BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022473
(296 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q93ZT5|EDL3_ARATH EID1-like F-box protein 3 OS=Arabidopsis thaliana GN=EDL3 PE=2 SV=1
Length = 272
Score = 340 bits (872), Expect = 8e-93, Method: Compositional matrix adjust.
Identities = 160/243 (65%), Positives = 193/243 (79%)
Query: 4 NANKRLRPNPPSQVPESGDSGIFNERILLLVFESVGWDLHMLCLTASLDRKLRAIAERLL 63
N N+RL+ N PS++P SG SGI NER+L+LVFES+ WD+H LC ASL R+ AIA R+L
Sbjct: 13 NTNRRLKFNQPSRLPNSGKSGIENERVLVLVFESISWDIHTLCTIASLSRRFCAIARRIL 72
Query: 64 WRKLCECRAPRMIETLANGAPNGRINGGWHALAKLMFHCCGCESTRNFKVSKASPAHFVQ 123
WR+LC RAP M+ L+ P+GRI+GGWHALAKLMF C G ESTR F +S+ + HF
Sbjct: 73 WRRLCVNRAPGMVAALSGEDPSGRIDGGWHALAKLMFFCGGGESTRYFNLSQPTSGHFAC 132
Query: 124 ASRFSKTSGRSFLTKKCRGDLLYVSDPCEHPMGNKEDDLGIFRGVFRGFLKSTTRACLIR 183
SRFSKTSGR FL K CR DLLY+SDPCEH ++ LG+FRGVFR F++S TR CL+R
Sbjct: 133 ESRFSKTSGRFFLPKNCRRDLLYMSDPCEHQAVGGDEHLGVFRGVFREFMRSKTRECLVR 192
Query: 184 RRVELEERVKCPYCGARVWSMTAARLVPKSAARRLGSHDGGLEYFVCINGHLHGSCWLVP 243
R+ LEE+V+CPYCG RVWSMTAARLVPKSAARRLGS +GGLE+FVC+NGHLHG+CWL+P
Sbjct: 193 RQAALEEKVRCPYCGGRVWSMTAARLVPKSAARRLGSREGGLEFFVCVNGHLHGTCWLIP 252
Query: 244 LSS 246
LSS
Sbjct: 253 LSS 255
>sp|Q9LF38|EDL1_ARATH EID1-like F-box protein 1 OS=Arabidopsis thaliana GN=EDL1 PE=2 SV=1
Length = 293
Score = 214 bits (546), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 103/243 (42%), Positives = 148/243 (60%), Gaps = 1/243 (0%)
Query: 24 GIFNERILLLVFESVGWDLHMLCLTASLDRKLRAIAERLLWRKLCECRAPRMIETLANGA 83
G NE +LLLVF+ + W+ ++ + + R A+R+LW++ C+ RAP+M+ L +
Sbjct: 20 GHLNEDVLLLVFQHLNWNPKLVATLSCVCRWFDDFAKRVLWKEFCKTRAPKMMLDLQSSG 79
Query: 84 PNGRINGGWHALAKLMFHCCGCESTRNFKVSKASPAHFVQASRFSKTSGRSFLTKKCRGD 143
+ I+G W AL KL+ +C GC F S P HFV +RFS+T GRS L +CR D
Sbjct: 80 SHC-IDGNWRALGKLLIYCSGCTQGGLFNSSVQIPGHFVYRTRFSRTLGRSLLPPQCRTD 138
Query: 144 LLYVSDPCEHPMGNKEDDLGIFRGVFRGFLKSTTRACLIRRRVELEERVKCPYCGARVWS 203
+LYV DPCEH +E D+G+FRG+F+ F S R +I + V CPYC A++WS
Sbjct: 139 VLYVCDPCEHLDQGEEGDVGLFRGIFKSFPTSKVRKVIINKAVPFHPSEVCPYCKAKLWS 198
Query: 204 MTAARLVPKSAARRLGSHDGGLEYFVCINGHLHGSCWLVPLSSEEDACDEDDDEDGEDGE 263
M A+++P+SA RL +++ +EYFVC+NGHL G C L PLS EDA +D+ E +
Sbjct: 199 MLQAKIIPQSACIRLEAYEDCIEYFVCLNGHLLGICTLAPLSDSEDAIPSEDNNHTEKKQ 258
Query: 264 DGG 266
D G
Sbjct: 259 DNG 261
>sp|Q9FLZ8|EDL2_ARATH EID1-like F-box protein 2 OS=Arabidopsis thaliana GN=EDL2 PE=2 SV=1
Length = 249
Score = 192 bits (487), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 93/228 (40%), Positives = 143/228 (62%), Gaps = 3/228 (1%)
Query: 24 GIFNERILLLVFESVGWDLHMLCLTASLDRKLRAIAERLLWRKLCECRAPRMIETLANGA 83
G +E +L L+ + + W+ +++ + + + +A+RLLW++ C RAP+M+ L +
Sbjct: 20 GHLSEEVLFLMVQHLNWNPNVIATLSCVCKWFDDLAKRLLWKEFCRARAPKMMSDLQSSG 79
Query: 84 PNGRINGGWHALAKLMFHCCGCESTRNFKVSKASPAHFVQASRFSKTSGRSFLTKKCRGD 143
+ ++G W AL KL+ +C G F + S HFV +RFS+TSGRSFL +CR D
Sbjct: 80 SHS-VDGSWRALGKLLIYCSGSSKGGLFNDVQIS-GHFVHRTRFSRTSGRSFLPPQCRTD 137
Query: 144 -LLYVSDPCEHPMGNKEDDLGIFRGVFRGFLKSTTRACLIRRRVELEERVKCPYCGARVW 202
+LYVSDPCEH ++ DLG FRG+F+ F S R LI++ CPYC A++W
Sbjct: 138 DILYVSDPCEHLDQGEDGDLGFFRGIFKSFSMSKVRKLLIKKGTPFHPTEVCPYCKAKLW 197
Query: 203 SMTAARLVPKSAARRLGSHDGGLEYFVCINGHLHGSCWLVPLSSEEDA 250
SM A+++P+SA+ RLG+++ +EY+VC+NGH+ G C L+PLS E A
Sbjct: 198 SMLQAKMIPQSASCRLGAYEDSIEYYVCLNGHMLGVCTLLPLSDSEGA 245
>sp|Q8LEA8|EID1_ARATH Phytochrome A-associated F-box protein OS=Arabidopsis thaliana
GN=EID1 PE=1 SV=2
Length = 336
Score = 43.1 bits (100), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 63/142 (44%), Gaps = 13/142 (9%)
Query: 112 KVSKASPAHFVQAS-RFSKTSGRSFLTKKCRGDLLYVSD--PCEHPMGNKEDDLGIFRGV 168
K+ ++ +H S+ G L + RGD LY+ + C H ++ + +FRGV
Sbjct: 201 KICRSLGSHLASGGWNLSREQGNKLLASRFRGDCLYICNWPGCIH--VEEKRNYMLFRGV 258
Query: 169 FRGFLKSTTRACLIRRRVELEERVKCPYCGA-RVWSMTAARLVPKSAARRLGSHDGG--- 224
F+ F +S + +KC +C W + ++ + R G HD G
Sbjct: 259 FKDFKRSRVWRTINDGNRSKTSGLKCAFCLCDETWDLHSSFCL----RRVFGFHDDGEPV 314
Query: 225 LEYFVCINGHLHGSCWLVPLSS 246
+ +VC NGH+ G+ +PL +
Sbjct: 315 VRAYVCENGHVSGAWTALPLYT 336
>sp|Q3UH68|LIMC1_MOUSE LIM and calponin homology domains-containing protein 1 OS=Mus
musculus GN=Limch1 PE=1 SV=2
Length = 1057
Score = 33.9 bits (76), Expect = 1.5, Method: Composition-based stats.
Identities = 20/50 (40%), Positives = 27/50 (54%), Gaps = 4/50 (8%)
Query: 245 SSEEDACDEDDDEDGEDGEDGGD-DPDGAYDLDDNHEHRTVIKCEPHVAF 293
+SEE + +DEDGE+ GD +PD A + H TV +C P VA
Sbjct: 631 ASEETESNGQEDEDGEERPGTGDLEPDSA---EPQHFTTTVTRCSPTVAL 677
>sp|Q4WYF1|HIR3_ASPFU Histone transcription regulator 3 homolog OS=Neosartorya fumigata
(strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100)
GN=hir3 PE=3 SV=1
Length = 2019
Score = 33.9 bits (76), Expect = 1.6, Method: Composition-based stats.
Identities = 14/38 (36%), Positives = 24/38 (63%)
Query: 252 DEDDDEDGEDGEDGGDDPDGAYDLDDNHEHRTVIKCEP 289
++ D+E E+GE G+D + A D++D E VI+ +P
Sbjct: 1969 NDGDEESLEEGEGNGEDTENAQDMEDEAEEPEVIEGDP 2006
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.138 0.447
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 121,510,067
Number of Sequences: 539616
Number of extensions: 5233644
Number of successful extensions: 35228
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 201
Number of HSP's successfully gapped in prelim test: 72
Number of HSP's that attempted gapping in prelim test: 30658
Number of HSP's gapped (non-prelim): 3021
length of query: 296
length of database: 191,569,459
effective HSP length: 117
effective length of query: 179
effective length of database: 128,434,387
effective search space: 22989755273
effective search space used: 22989755273
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (28.1 bits)