BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022475
(296 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1BX4|A Chain A, Structure Of Human Adenosine Kinase At 1.50 Angstroms
pdb|2I6A|A Chain A, Human Adenosine Kinase In Complex With 5'-Deoxy-5-
Iodotubercidin
pdb|2I6A|B Chain B, Human Adenosine Kinase In Complex With 5'-Deoxy-5-
Iodotubercidin
pdb|2I6A|C Chain C, Human Adenosine Kinase In Complex With 5'-Deoxy-5-
Iodotubercidin
pdb|2I6A|D Chain D, Human Adenosine Kinase In Complex With 5'-Deoxy-5-
Iodotubercidin
pdb|2I6B|A Chain A, Human Adenosine Kinase In Complex With An Acetylinic
Inhibitor
pdb|2I6B|B Chain B, Human Adenosine Kinase In Complex With An Acetylinic
Inhibitor
Length = 345
Score = 355 bits (910), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 163/298 (54%), Positives = 220/298 (73%), Gaps = 2/298 (0%)
Query: 1 MYDELASKENVEYIAGGATQNSIKVAQWMLQIPG-ATSYIGCIGKDKFGEEMKKNSTAAG 59
++DEL K VEY AGG+TQNSIKVAQWM+Q P A ++ GCIG DKFGE +K+ + A
Sbjct: 48 LFDELVKKFKVEYHAGGSTQNSIKVAQWMIQQPHKAATFFGCIGIDKFGEILKRKAAEAH 107
Query: 60 VNVKYYEDESAPTGTCAVCVVGGERSLVANLSAANCYKSE-HLKRPEIWSIVEKAKYYYI 118
V+ YYE PTGTCA C+ G RSL+ANL+AANCYK E HL + W +VEKA+ YI
Sbjct: 108 VDAHYYEQNEQPTGTCAACITGDNRSLIANLAAANCYKKEKHLDLEKNWMLVEKARVCYI 167
Query: 119 AGFFLTVSPESIQMVAEHAAAKNKVFMMNLSAPFICEFFREPQEKALPYMDYVFGNETEA 178
AGFFLTVSPES+ VA HA+ N++F +NLSAPFI +F++E K +PY+D +FGNETEA
Sbjct: 168 AGFFLTVSPESVLKVAHHASENNRIFTLNLSAPFISQFYKESLMKVMPYVDILFGNETEA 227
Query: 179 RTFAKVHGWETDNVEEIALKISQWPKASGTHKRITVITQGADPVVVAEDGKVKLFPVILL 238
TFA+ G+ET +++EIA K PK + +RI + TQG D ++A + +V F V+
Sbjct: 228 ATFAREQGFETKDIKEIAKKTQALPKMNSKRQRIVIFTQGRDDTIMATESEVTAFAVLDQ 287
Query: 239 PKEKLVDTNGAGDAFVGGFLSQLVQEKPVEDCVRTGCYAANVVIQRSGCTYPPKPEFN 296
+++++DTNGAGDAFVGGFLSQLV +KP+ +C+R G YAA+++I+R+GCT+P KP+F+
Sbjct: 288 DQKEIIDTNGAGDAFVGGFLSQLVSDKPLTECIRAGHYAASIIIRRTGCTFPEKPDFH 345
>pdb|3LOO|A Chain A, Crystal Structure Of Anopheles Gambiae Adenosine Kinase In
Complex With P1,P4-Di(Adenosine-5) Tetraphosphate
pdb|3LOO|B Chain B, Crystal Structure Of Anopheles Gambiae Adenosine Kinase In
Complex With P1,P4-Di(Adenosine-5) Tetraphosphate
pdb|3LOO|C Chain C, Crystal Structure Of Anopheles Gambiae Adenosine Kinase In
Complex With P1,P4-Di(Adenosine-5) Tetraphosphate
Length = 365
Score = 311 bits (797), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 147/297 (49%), Positives = 210/297 (70%), Gaps = 2/297 (0%)
Query: 1 MYDELASKENVEYIAGGATQNSIKVAQWMLQIPGATSYIGCIGKDKFGEEMKKNSTAAGV 60
MY EL K EYIAGG+ QNS++VAQW+LQ P + GC+G+D++ +++ +T+ GV
Sbjct: 65 MYQELIEKYQAEYIAGGSVQNSLRVAQWILQRPRTAIFFGCVGQDEYARILEERATSNGV 124
Query: 61 NVKYYEDESAPTGTCAVCVVGGERSLVANLSAANCYKSEHLKRPEIWSIVEKAKYYYIAG 120
NV+Y ++PTGTCAV V G +RSL ANL+AAN + EHL+ + ++ A+++Y++G
Sbjct: 125 NVQYQRSATSPTGTCAVLVTGTQRSLCANLAAANDFTPEHLRSDGNRAYLQGAQFFYVSG 184
Query: 121 FFLTVSPESIQMVAEHAAAKNKVFMMNLSAPFICEFFREPQEKALPYMDYVFGNETEART 180
FF TVS ES VA+ AAA ++FMMNLSAPF+ +F++ E+ PY+D +FGNETEA
Sbjct: 185 FFFTVSFESALSVAKEAAATGRMFMMNLSAPFVPQFYKNNLEEIFPYVDVLFGNETEAIA 244
Query: 181 FAKVHGWETDNVEEIALKISQWPKASGTHKRITVITQGADPVVVAEDG--KVKLFPVILL 238
AK + T+++ EI +I+ PK +G KRI +ITQG+DPV++ E G V+ FPV L
Sbjct: 245 LAKEFNYGTEDLREIGKRIAALPKENGKRKRIVIITQGSDPVLLIEAGTDNVREFPVQKL 304
Query: 239 PKEKLVDTNGAGDAFVGGFLSQLVQEKPVEDCVRTGCYAANVVIQRSGCTYPPKPEF 295
E++VDTNGAGDAFVGGFL+QL+Q + V+ C++ G +AA +IQRSGCT+ +P F
Sbjct: 305 APEQMVDTNGAGDAFVGGFLAQLLQSRTVDVCIKCGIWAAREIIQRSGCTFEGEPSF 361
>pdb|2XTB|A Chain A, Crystal Structure Of Trypanosoma Brucei Rhodesiense
Adenosine Kinase Complexed With Activator
pdb|3OTX|A Chain A, Crystal Structure Of Trypanosoma Brucei Rhodesiense
Adenosine Kinase Complexed With Inhibitor Ap5a
pdb|3OTX|B Chain B, Crystal Structure Of Trypanosoma Brucei Rhodesiense
Adenosine Kinase Complexed With Inhibitor Ap5a
Length = 347
Score = 236 bits (602), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 117/298 (39%), Positives = 174/298 (58%), Gaps = 2/298 (0%)
Query: 1 MYDELASKENVEYIAGGATQNSIKVAQWMLQIPGA--TSYIGCIGKDKFGEEMKKNSTAA 58
++D++ NV Y+ GG+ N +VAQWM Q +Y+GCI D++G+ +K+ +
Sbjct: 49 IFDDIEKMPNVRYVPGGSGLNVARVAQWMQQAYKGKFVTYVGCIADDRYGKVLKEAAEHE 108
Query: 59 GVNVKYYEDESAPTGTCAVCVVGGERSLVANLSAANCYKSEHLKRPEIWSIVEKAKYYYI 118
G+ + A +G CAVC+ G ER+LVA+L AAN SEH++ P + +++++ +Y
Sbjct: 109 GIVMAVEHTTKAGSGACAVCITGKERTLVADLGAANHLSSEHMRSPAVVRAMDESRIFYF 168
Query: 119 AGFFLTVSPESIQMVAEHAAAKNKVFMMNLSAPFICEFFREPQEKALPYMDYVFGNETEA 178
+GF LTV + A + +FM+NLSAPFI +FF + LPY D + N EA
Sbjct: 169 SGFTLTVDVNHVLQACRKAREVDGLFMINLSAPFIMQFFSAQLGEVLPYTDIIVANRHEA 228
Query: 179 RTFAKVHGWETDNVEEIALKISQWPKASGTHKRITVITQGADPVVVAEDGKVKLFPVILL 238
+ FA + W+TD VEEIA + +GT R+ V T+ + V+A V+ PV L
Sbjct: 229 KEFANMMKWDTDCVEEIARRAVSEVPYTGTKGRVVVFTRDIESTVLATKDGVETVPVPQL 288
Query: 239 PKEKLVDTNGAGDAFVGGFLSQLVQEKPVEDCVRTGCYAANVVIQRSGCTYPPKPEFN 296
++K++D NGAGDAF+GGFLS K + C TG Y A VIQR GC++P KP F+
Sbjct: 289 DQDKVIDMNGAGDAFMGGFLSAYAVGKDLRRCCETGHYTAQEVIQRDGCSFPEKPSFS 346
>pdb|3VAQ|A Chain A, Adenosine Kinase From Schistosoma Mansoni In Complex With
Adenosine
pdb|3VAQ|B Chain B, Adenosine Kinase From Schistosoma Mansoni In Complex With
Adenosine
pdb|4DC3|A Chain A, Adenosine Kinase From Schistosoma Mansoni In Complex With
2- Fluoroadenosine
pdb|4DC3|B Chain B, Adenosine Kinase From Schistosoma Mansoni In Complex With
2- Fluoroadenosine
Length = 372
Score = 213 bits (543), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 111/300 (37%), Positives = 177/300 (59%), Gaps = 4/300 (1%)
Query: 1 MYDELASKENVEYIAGGATQNSIKVAQWMLQIPGATSYIGCIGKDKFGEEMKKNSTAAGV 60
+YDE+ K+ + YIAGGAT N++K+ QW++Q P SY+GCIG D G+ +K + +A +
Sbjct: 68 IYDEIQKKKKLNYIAGGATLNTVKMIQWIIQKPFVCSYVGCIGADIQGKYIKNDCSALDL 127
Query: 61 NVKY-YEDESAPTGTCAVCVVGGERSLVANLSAANCYKSEHLKRPEIWSIVEKAKYYYIA 119
++ +E TG AV V RS+V L AA H+++P +WS+VEKA+ YYIA
Sbjct: 128 VTEFQIAEEPLMTGKVAVLVSEKLRSMVTYLGAACDLSLAHIEQPHVWSLVEKAQVYYIA 187
Query: 120 GFFLTVSPESIQMVAEHAAAKNKVFMMNLSAPFICEFFREPQEKALPYMDYVFGNETEAR 179
GF + E + +A+H+ K+F NLSAPF+ +F + ++ + Y + VFGNE+EA
Sbjct: 188 GFVINTCYEGMLKIAKHSLENEKLFCFNLSAPFLSQFNTKEVDEMISYSNIVFGNESEAE 247
Query: 180 TFAKVHGWETDNVEEIALKISQWPKASG-THKRITVITQGADPVVVAE--DGKVKLFPVI 236
+ +VHG D V A I+ P A G KR+ +IT+G +P++ + D ++ F V
Sbjct: 248 AYGEVHGLLEDTVHATARYIADLPFADGKKRKRLVIITRGKNPLLYTDSSDSEIHQFMVE 307
Query: 237 LLPKEKLVDTNGAGDAFVGGFLSQLVQEKPVEDCVRTGCYAANVVIQRSGCTYPPKPEFN 296
++++DTNGAGDAF GF++ ++ KP+ + AA +I RSG + + ++
Sbjct: 308 QFKDDQIIDTNGAGDAFAAGFIADYIRGKPMITSLHAAVKAAAYIICRSGFSLGSRDSYS 367
>pdb|3VAS|A Chain A, Adenosine Kinase From Schistosoma Mansoni In Complex With
Adenosine In Occluded Loop Conformation
pdb|3VAS|B Chain B, Adenosine Kinase From Schistosoma Mansoni In Complex With
Adenosine In Occluded Loop Conformation
Length = 370
Score = 213 bits (543), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 111/300 (37%), Positives = 177/300 (59%), Gaps = 4/300 (1%)
Query: 1 MYDELASKENVEYIAGGATQNSIKVAQWMLQIPGATSYIGCIGKDKFGEEMKKNSTAAGV 60
+YDE+ K+ + YIAGGAT N++K+ QW++Q P SY+GCIG D G+ +K + +A +
Sbjct: 66 IYDEIQKKKKLNYIAGGATLNTVKMIQWIIQKPFVCSYVGCIGADIQGKYIKNDCSALDL 125
Query: 61 NVKY-YEDESAPTGTCAVCVVGGERSLVANLSAANCYKSEHLKRPEIWSIVEKAKYYYIA 119
++ +E TG AV V RS+V L AA H+++P +WS+VEKA+ YYIA
Sbjct: 126 VTEFQIAEEPLMTGKVAVLVSEKLRSMVTYLGAACDLSLAHIEQPHVWSLVEKAQVYYIA 185
Query: 120 GFFLTVSPESIQMVAEHAAAKNKVFMMNLSAPFICEFFREPQEKALPYMDYVFGNETEAR 179
GF + E + +A+H+ K+F NLSAPF+ +F + ++ + Y + VFGNE+EA
Sbjct: 186 GFVINTCYEGMLKIAKHSLENEKLFCFNLSAPFLSQFNTKEVDEMISYSNIVFGNESEAE 245
Query: 180 TFAKVHGWETDNVEEIALKISQWPKASG-THKRITVITQGADPVVVAE--DGKVKLFPVI 236
+ +VHG D V A I+ P A G KR+ +IT+G +P++ + D ++ F V
Sbjct: 246 AYGEVHGLLEDTVHATARYIADLPFADGKKRKRLVIITRGKNPLLYTDSSDSEIHQFMVE 305
Query: 237 LLPKEKLVDTNGAGDAFVGGFLSQLVQEKPVEDCVRTGCYAANVVIQRSGCTYPPKPEFN 296
++++DTNGAGDAF GF++ ++ KP+ + AA +I RSG + + ++
Sbjct: 306 QFKDDQIIDTNGAGDAFAAGFIADYIRGKPMITSLHAAVKAAAYIICRSGFSLGSRDSYS 365
>pdb|3UQ6|A Chain A, Adenosine Kinase From Schistosoma Mansoni In Complex With
Adenosine And Amp
pdb|3UQ6|B Chain B, Adenosine Kinase From Schistosoma Mansoni In Complex With
Adenosine And Amp
pdb|3UQ9|A Chain A, Adenosine Kinase From Schistosoma Mansoni In Complex With
Tubercidin
pdb|3UQ9|B Chain B, Adenosine Kinase From Schistosoma Mansoni In Complex With
Tubercidin
Length = 372
Score = 213 bits (542), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 111/300 (37%), Positives = 177/300 (59%), Gaps = 4/300 (1%)
Query: 1 MYDELASKENVEYIAGGATQNSIKVAQWMLQIPGATSYIGCIGKDKFGEEMKKNSTAAGV 60
+YDE+ K+ + YIAGGAT N++K+ QW++Q P SY+GCIG D G+ +K + +A +
Sbjct: 68 IYDEIQKKKKLNYIAGGATLNTVKMIQWIIQKPFVCSYVGCIGADIQGKYIKNDCSALDL 127
Query: 61 NVKY-YEDESAPTGTCAVCVVGGERSLVANLSAANCYKSEHLKRPEIWSIVEKAKYYYIA 119
++ +E TG AV V RS+V L AA H+++P +WS+VEKA+ YYIA
Sbjct: 128 VTEFQIAEEPLMTGKVAVLVSEKLRSMVTYLGAACDLSLAHIEQPHVWSLVEKAQVYYIA 187
Query: 120 GFFLTVSPESIQMVAEHAAAKNKVFMMNLSAPFICEFFREPQEKALPYMDYVFGNETEAR 179
GF + E + +A+H+ K+F NLSAPF+ +F + ++ + Y + VFGNE+EA
Sbjct: 188 GFVINTCYEGMLKIAKHSLENEKLFCFNLSAPFLSQFNTKEVDEMISYSNIVFGNESEAE 247
Query: 180 TFAKVHGWETDNVEEIALKISQWPKASG-THKRITVITQGADPVVVAE--DGKVKLFPVI 236
+ +VHG D V A I+ P A G KR+ +IT+G +P++ + D ++ F V
Sbjct: 248 AYGEVHGLLEDTVHATARYIADLPFADGKKRKRLVIITRGKNPLLYTDSSDSEIHQFMVE 307
Query: 237 LLPKEKLVDTNGAGDAFVGGFLSQLVQEKPVEDCVRTGCYAANVVIQRSGCTYPPKPEFN 296
++++DTNGAGDAF GF++ ++ KP+ + AA +I RSG + + ++
Sbjct: 308 QFKDDQIIDTNGAGDAFAAGFIADYIRGKPMITSLHAAVKAAAYIICRSGFSLGSRDSYS 367
>pdb|1LIO|A Chain A, Structure Of Apo T. Gondii Adenosine Kinase
Length = 363
Score = 153 bits (386), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 105/298 (35%), Positives = 154/298 (51%), Gaps = 27/298 (9%)
Query: 10 NVEYIAGGATQNSIKVAQWMLQIPGATSYIGCIGKDKFGEEMKKNSTAAGVNVKYYEDES 69
N + GG+ NS++V Q +L+ PG+ Y+G IG D G+ +K+ G+ ++
Sbjct: 62 NPTSLPGGSALNSVRVVQKLLRKPGSAGYMGAIGDDPRGQVLKELCDKEGLATRFMVAPG 121
Query: 70 APTGTCAVCVVGGERSLVANLSAANCYKSEHLKRPEIW-SIVEKAKYYYIAGFFLTVSPE 128
TGTCAV + ER+L +L A ++ PE W + A +Y + LT +P+
Sbjct: 122 QSTGTCAVLINEKERTLCTHLGACGSFRI-----PEDWTTFASGALIFYATAYTLTATPK 176
Query: 129 SIQMVAEHA-AAKNKVFMMNLSAPFICEFFREPQEKALPYMDYVFGNETEARTFAKVH-- 185
+ VA +A N +F +NLSAPF E +++ + L + + +FGNE E AKVH
Sbjct: 177 NALEVAGYAHGIPNAIFTLNLSAPFCVELYKDAMQSLLLHTNILFGNEEEFAHLAKVHNL 236
Query: 186 ------GWETDNVEEI------ALKISQWPKASGTHKRITVITQGADPVVVAE---DGK- 229
T N E AL++ + +G K + V+T+G +PV+ AE DG
Sbjct: 237 VAADKTALSTANKEHAVEVCTGALRLLTAGQNTGATK-LVVMTRGHNPVIAAEQTADGTV 295
Query: 230 -VKLFPVILLPKEKLVDTNGAGDAFVGGFLSQLVQEKPVEDCVRTGCYAANVVIQRSG 286
V V ++ EK+VDTNGAGDAFVGGFL L Q K V+ C+ G A VIQ G
Sbjct: 296 VVHEVGVPVVAAEKIVDTNGAGDAFVGGFLYGLSQGKTVKQCIMCGNACAQDVIQHVG 353
>pdb|1LII|A Chain A, Structure Of T. Gondii Adenosine Kinase Bound To Adenosine
2 And Amp-Pcp
pdb|1LIJ|A Chain A, Structure Of T. Gondii Adenosine Kinase Bound To Prodrug 2
7-Iodotubercidin And Amp-Pcp
pdb|1LIK|A Chain A, Structure Of T. Gondii Adenosine Kinase Bound To Adenosine
Length = 363
Score = 152 bits (384), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 104/299 (34%), Positives = 155/299 (51%), Gaps = 29/299 (9%)
Query: 10 NVEYIAGGATQNSIKVAQWMLQIPGATSYIGCIGKDKFGEEMKKNSTAAGVNVKYYEDES 69
N + GG+ NS++V Q +L+ PG+ Y+G IG D G+ +K+ G+ ++
Sbjct: 62 NPTSLPGGSALNSVRVVQKLLRKPGSAGYMGAIGDDPRGQVLKELCDKEGLATRFMVAPG 121
Query: 70 APTGTCAVCVVGGERSLVANLSAANCYKSEHLKRPEIW-SIVEKAKYYYIAGFFLTVSPE 128
TGTCAV + ER+L +L A ++ PE W + A +Y + LT +P+
Sbjct: 122 QSTGTCAVLINEKERTLCTHLGACGSFRI-----PENWTTFASGALIFYATAYTLTATPK 176
Query: 129 SIQMVAEHA-AAKNKVFMMNLSAPFICEFFREPQEKALPYMDYVFGNETEARTFAKVHGW 187
+ VA +A N +F +NLSAPF E +++ + L + + +FGNE E AKVH
Sbjct: 177 NALEVAGYAHGIPNAIFTLNLSAPFCVELYKDAMQSLLLHTNILFGNEEEFAHLAKVHNL 236
Query: 188 ETDNVEEIALKISQWPKA----SGTHKRIT-----------VITQGADPVVVAE---DGK 229
E++AL ++ A +G + +T V+T+G +PV+ AE DG
Sbjct: 237 VA--AEKVALSVANKEHAVEVCTGALRLLTAGQNTGATKLVVMTRGHNPVIAAEQTADGT 294
Query: 230 --VKLFPVILLPKEKLVDTNGAGDAFVGGFLSQLVQEKPVEDCVRTGCYAANVVIQRSG 286
V V ++ EK+VDTNGAGDAFVGGFL L Q K V+ C+ G A VIQ G
Sbjct: 295 VVVHEVGVPVVAAEKIVDTNGAGDAFVGGFLYGLSQGKTVKQCIMCGNACAQDVIQHVG 353
>pdb|1DGM|A Chain A, Crystal Structure Of Adenosine Kinase From Toxoplasma
Gondii
Length = 363
Score = 151 bits (381), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 104/298 (34%), Positives = 153/298 (51%), Gaps = 27/298 (9%)
Query: 10 NVEYIAGGATQNSIKVAQWMLQIPGATSYIGCIGKDKFGEEMKKNSTAAGVNVKYYEDES 69
N + GG+ NS++V Q +L+ PG+ Y+G IG D G+ +K+ G+ ++
Sbjct: 62 NPTSLPGGSALNSVRVVQKLLRKPGSAGYMGAIGDDPRGQVLKELCDKEGLATRFMVAPG 121
Query: 70 APTGTCAVCVVGGERSLVANLSAANCYKSEHLKRPEIW-SIVEKAKYYYIAGFFLTVSPE 128
TG CAV + ER+L +L A + + PE W + A +Y + LT +P+
Sbjct: 122 QSTGVCAVLINEKERTLCTHLGACGSF-----RLPEDWTTFASGALIFYATAYTLTATPK 176
Query: 129 SIQMVAEHA-AAKNKVFMMNLSAPFICEFFREPQEKALPYMDYVFGNETEARTFAKVH-- 185
+ VA +A N +F +NLSAPF E +++ + L + + +FGNE E AKVH
Sbjct: 177 NAFEVAGYAHGIPNAIFTLNLSAPFCVELYKDAMQSLLLHTNILFGNEEEFAHLAKVHNL 236
Query: 186 ------GWETDNVEEI------ALKISQWPKASGTHKRITVITQGADPVVVAE---DGK- 229
T N E AL++ + +G K + V+T+G +PV+ AE DG
Sbjct: 237 VAAEKTALSTANKEHAVEVCTGALRLLTAGQNTGATK-LVVMTRGHNPVIAAEQTADGTV 295
Query: 230 -VKLFPVILLPKEKLVDTNGAGDAFVGGFLSQLVQEKPVEDCVRTGCYAANVVIQRSG 286
V V ++ EK+VDTNGAGDAFVGGFL L Q K V+ C+ G A VIQ G
Sbjct: 296 VVHEVGVPVVAAEKIVDTNGAGDAFVGGFLYALSQGKTVKQCIMCGNACAQDVIQHVG 353
>pdb|2ABS|A Chain A, Crystal Structure Of T. Gondii Adenosine Kinase Complexed
With Amp-Pcp
pdb|2A9Y|A Chain A, Crystal Structure Of T. Gondii Adenosine Kinase Complexed
With N6-Dimethyladenosine
pdb|2A9Z|A Chain A, Crystal Structure Of T. Gondii Adenosine Kinase Complexed
With N6-Dimethyladenosine And Amp-Pcp
pdb|2AA0|A Chain A, Crystal Structure Of T. Gondii Adenosine Kinase Complexed
With 6-Methylmercaptopurine Riboside
pdb|2AB8|A Chain A, Crystal Structure Of T. Gondii Adenosine Kinase Complexed
With 6-Methylmercaptopurine Riboside And Amp-Pcp
Length = 383
Score = 149 bits (376), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 103/298 (34%), Positives = 152/298 (51%), Gaps = 27/298 (9%)
Query: 10 NVEYIAGGATQNSIKVAQWMLQIPGATSYIGCIGKDKFGEEMKKNSTAAGVNVKYYEDES 69
N + GG+ NS++V Q +L+ PG+ Y+G IG D G+ +K+ G+ ++
Sbjct: 82 NPTSLPGGSALNSVRVVQKLLRKPGSAGYMGAIGDDPRGQVLKELCDKEGLATRFMVAPG 141
Query: 70 APTGTCAVCVVGGERSLVANLSAANCYKSEHLKRPEIW-SIVEKAKYYYIAGFFLTVSPE 128
TG CAV + ER+L +L A + + PE W + A +Y + LT +P+
Sbjct: 142 QSTGVCAVLINEKERTLCTHLGACGSF-----RLPEDWTTFASGALIFYATAYTLTATPK 196
Query: 129 SIQMVAEHA-AAKNKVFMMNLSAPFICEFFREPQEKALPYMDYVFGNETEARTFAKVH-- 185
+ VA +A N +F +NLSAPF E +++ + L + + +FGNE E AKVH
Sbjct: 197 NALEVAGYAHGIPNAIFTLNLSAPFCVELYKDAMQSLLLHTNILFGNEEEFAHLAKVHNL 256
Query: 186 ------GWETDNVEEI------ALKISQWPKASGTHKRITVITQGADPVVVAE---DGK- 229
T N E AL++ + + K + V+T+G +PV+ AE DG
Sbjct: 257 VAAEKTALSTANKEHAVEVCTGALRLLTAGQNTSATK-LVVMTRGHNPVIAAEQTADGTV 315
Query: 230 -VKLFPVILLPKEKLVDTNGAGDAFVGGFLSQLVQEKPVEDCVRTGCYAANVVIQRSG 286
V V ++ EK+VDTNGAGDAFVGGFL L Q K V+ C+ G A VIQ G
Sbjct: 316 VVHEVGVPVVAAEKIVDTNGAGDAFVGGFLYALSQGKTVKQCIMCGNACAQDVIQHVG 373
>pdb|4E3A|A Chain A, Crystal Structure Of Probable Sugar Kinase Protein From
Rhizobium Etli Cfn 42
pdb|4E3A|B Chain B, Crystal Structure Of Probable Sugar Kinase Protein From
Rhizobium Etli Cfn 42
Length = 352
Score = 72.0 bits (175), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 77/285 (27%), Positives = 123/285 (43%), Gaps = 31/285 (10%)
Query: 15 AGGATQNSIKVAQWMLQIPGATSYIGCIGKDKFGEEMKKNSTAAGVNVKYYEDES-APTG 73
+GG+ N+ A + + G +Y G + D+ G+ + A GV+ + + PT
Sbjct: 79 SGGSAGNT---AAGVANLGGKAAYFGNVAADQLGDIFTHDIRAQGVHYQTKPKGAFPPTA 135
Query: 74 TCAVCVV-GGERSLVANLSAANCYKSEHLKRPEIWSIVEKAKYYYIAGFFLT--VSPESI 130
+ V GERS L A E ++ +V AK Y G+ + E+I
Sbjct: 136 RSXIFVTEDGERSXNTYLGACVELGPEDVE----ADVVADAKVTYFEGYLWDPPRAKEAI 191
Query: 131 QMVAEHAAAKNKVFMMNLSAPFICEFFREP--QEKALPYMDYVFGNETEARTFAKVHGWE 188
A A + LS F + +R +D VF N EA + ++
Sbjct: 192 LDCARIAHQHGREXSXTLSDSFCVDRYRGEFLDLXRSGKVDIVFANRQEALSL-----YQ 246
Query: 189 TDNVEEIALKISQWPKASGTHKRITVITQGADPVVVAEDGKVKLFPVILLPKEKLVDTNG 248
TD+ EE +I+ K I +T + V+ + G+ + + + +E +VDT G
Sbjct: 247 TDDFEEALNRIAADCK-------IAAVTXSENGAVILK-GRERYYVNAIRIRE-VVDTTG 297
Query: 249 AGDAFVGGFLSQLVQEKPVEDCVRTGCYAANVVIQRSGCTYPPKP 293
AGD F GFL Q + +EDC + GC AA +VIQ+ G P+P
Sbjct: 298 AGDLFASGFLYGYTQGRSLEDCGKLGCLAAGIVIQQIG----PRP 338
>pdb|3UBO|A Chain A, The Crystal Structure Of Adenosine Kinase From
Sinorhizobium Meliloti
pdb|3UBO|B Chain B, The Crystal Structure Of Adenosine Kinase From
Sinorhizobium Meliloti
Length = 354
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 73/285 (25%), Positives = 125/285 (43%), Gaps = 31/285 (10%)
Query: 15 AGGATQNSIKVAQWMLQIPGATSYIGCIGKDKFGEEMKKNSTAAGVNVKYYE-DESAPTG 73
+GG+ N+ A + + G +Y G + D+ GE + A GV+ + D PT
Sbjct: 59 SGGSAGNT---AAGVASLGGRAAYFGKVADDQLGEIFTHDIRAQGVHFQTKPLDGHPPTA 115
Query: 74 TCAVCVV-GGERSLVANLSAANCYKSEHLKRPEIWSIVEKAKYYYIAGFFLT--VSPESI 130
+ V GERS L A E ++ +V ++K Y G+ + ++I
Sbjct: 116 RSXIFVTEDGERSXNTYLGACVELGPEDVED----DVVAQSKVTYFEGYLWDPPRAKDAI 171
Query: 131 QMVAEHAAAKNKVFMMNLSAPFICEFFREP--QEKALPYMDYVFGNETEARTFAKVHGWE 188
+ A A A + LS F +R + +D VF N EA +E
Sbjct: 172 REAARIAHAHGRETAXTLSDSFCVHRYRSEFLELXRSGTVDIVFANRQEALAL-----YE 226
Query: 189 TDNVEEIALKISQWPKASGTHKRITVITQGADPVVVAEDGKVKLFPVILLPKEKLVDTNG 248
T++ + +++ K + +T+ +G+ VVV +V++ +L E++VDT G
Sbjct: 227 TEDFDRALELLARDCKLAA----VTLSEEGS--VVVRGAERVRVGASVL---EQVVDTTG 277
Query: 249 AGDAFVGGFLSQLVQEKPVEDCVRTGCYAANVVIQRSGCTYPPKP 293
AGD + GFL + +E+C + G AA +VI + G P+P
Sbjct: 278 AGDLYAAGFLFGYTSGRSLEECSKLGNLAAGIVIGQIG----PRP 318
>pdb|1RK2|A Chain A, E. Coli Ribokinase Complexed With Ribose And Adp, Solved
In Space Group P212121
pdb|1RK2|B Chain B, E. Coli Ribokinase Complexed With Ribose And Adp, Solved
In Space Group P212121
pdb|1RK2|C Chain C, E. Coli Ribokinase Complexed With Ribose And Adp, Solved
In Space Group P212121
pdb|1RK2|D Chain D, E. Coli Ribokinase Complexed With Ribose And Adp, Solved
In Space Group P212121
pdb|1RKA|A Chain A, The Apo Form Of E. Coli Ribokinase
pdb|1RKS|A Chain A, E. Coli Ribokinase In Complex With D-Ribose
pdb|1GQT|A Chain A, Activation Of Ribokinase By Monovalent Cations
pdb|1GQT|B Chain B, Activation Of Ribokinase By Monovalent Cations
pdb|1GQT|C Chain C, Activation Of Ribokinase By Monovalent Cations
pdb|1GQT|D Chain D, Activation Of Ribokinase By Monovalent Cations
pdb|1RKD|A Chain A, E. Coli Ribokinase Complexed With Ribose And Adp
Length = 309
Score = 57.8 bits (138), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 67/255 (26%), Positives = 113/255 (44%), Gaps = 26/255 (10%)
Query: 37 SYIGCIGKDKFGEEMKKNSTAAGVN---VKYYEDESAPTGTCAVCVVGGERSLVANLSAA 93
++I C G D GE +++ ++ V + ES TG + V G +++ + A
Sbjct: 59 AFIACTGDDSIGESVRQQLATDNIDITPVSVIKGES--TGVALIFVNGEGENVIGIHAGA 116
Query: 94 NCYKSEHLKRPEIWSIVEKAKYYYIAGFFLTV-SPESIQMVAEHAAAKNKVFMMNLSAPF 152
N S L ++ + + + + SP M A A +NK + AP
Sbjct: 117 NAALSPALVE------AQRERIANASALLMQLESPLESVMAAAKIAHQNKTIVALNPAPA 170
Query: 153 ICEFFREPQEKALPYMDYVFGNETEARTFAKVHGWETDNVEEIALKISQWPKASGTHKRI 212
RE ++ L +D + NETEA K+ G +N +E A K +Q G R
Sbjct: 171 -----RELPDELLALVDIITPNETEAE---KLTGIRVEN-DEDAAKAAQVLHEKGI--RT 219
Query: 213 TVITQGADPVVVAEDGKVKLFPVILLPKEKLVDTNGAGDAFVGGFLSQLVQEKPVEDCVR 272
+IT G+ V + +G+ + P + + VDT AGD F G ++ L++EKP+ + +R
Sbjct: 220 VLITLGSRGVWASVNGEGQRVPGF---RVQAVDTIAAGDTFNGALITALLEEKPLPEAIR 276
Query: 273 TGCYAANVVIQRSGC 287
AA + + R G
Sbjct: 277 FAHAAAAIAVTRKGA 291
>pdb|3LHX|A Chain A, Crystal Structure Of A Ketodeoxygluconokinase (Kdgk) From
Shigella Flexneri
pdb|3LHX|B Chain B, Crystal Structure Of A Ketodeoxygluconokinase (Kdgk) From
Shigella Flexneri
Length = 319
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/188 (27%), Positives = 81/188 (43%), Gaps = 26/188 (13%)
Query: 115 YYYIAGFFLTV-SPES----IQMVAEHAAAKNKVFMMNLSAPFICEFFREPQE---KALP 166
Y Y++G L + SP S + ++ E A KV N P + E Q+ + L
Sbjct: 132 YLYLSGISLAILSPTSREKLLSLLRECRAKGGKVIFDNNYRPRLWASKEETQQVYQQXLE 191
Query: 167 YMDYVFGNETEARTFAKVHGWETDNVEEIALKISQWPKASGTHK---RITVITQGADPVV 223
D F + W VE++ + TH + V+ +GAD +
Sbjct: 192 CTDIAFLTLDDEDAL-----WGQQPVEDVIAR---------THNAGVKEVVVKRGADSCL 237
Query: 224 VAEDGKVKL-FPVILLPKEKLVDTNGAGDAFVGGFLSQLVQEKPVEDCVRTGCYAANVVI 282
V+ G+ + P + LPKEK++DT AGD+F G+L+ + E+ + G A+ VI
Sbjct: 238 VSIAGEALVDVPAVKLPKEKVIDTTAAGDSFSAGYLAVRLTGGSAENAAKRGHLTASTVI 297
Query: 283 QRSGCTYP 290
Q G P
Sbjct: 298 QYRGAIIP 305
>pdb|3H49|A Chain A, Crystal Structure Of A Putative Ribokinase (Apo Form) From
E.Coli At 1.8a Resolution
pdb|3H49|B Chain B, Crystal Structure Of A Putative Ribokinase (Apo Form) From
E.Coli At 1.8a Resolution
pdb|3IN1|A Chain A, Crystal Structure Of A Putative Ribokinase In Complex With
Adp From E.Coli
pdb|3IN1|B Chain B, Crystal Structure Of A Putative Ribokinase In Complex With
Adp From E.Coli
Length = 325
Score = 54.3 bits (129), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 67/295 (22%), Positives = 120/295 (40%), Gaps = 39/295 (13%)
Query: 11 VEYIAGGATQNSIKVAQWMLQIPGATSYIGCIGKDKFGEEMKKNSTAAGVNVKYYEDESA 70
+E IA ++I A + ++ T+ IGKD G+ + + ++++ + + +
Sbjct: 35 LERIAXTTGGDAINEATIISRLGHRTALXSRIGKDAAGQFILDHCRKENIDIQSLKQDVS 94
Query: 71 PTGTCAVCVV--GGERSLVANLSAANCYKSEHLKRPEIWSI---------VEKAKYYYIA 119
+ V +V GER+ V N + +W + +AK +A
Sbjct: 95 IDTSINVGLVTEDGERTFVTN------------RNGSLWKLNIDDVDFARFSQAKLLSLA 142
Query: 120 GFFLT--VSPESIQMVAEHAAAKNKVFMMNLSAPFICEFFREPQEKALPYMDYVFGNETE 177
F + + +++ + A A+ + + P + E + E AL Y+DY+F N E
Sbjct: 143 SIFNSPLLDGKALTEIFTQAKARQXIICADXIKPRLNETLDDICE-ALSYVDYLFPNFAE 201
Query: 178 ARTFAKVHGWETDNVEEIALKISQWPKASGTHKRITVITQGADPVVVAEDGKVKLFPVIL 237
A+ G ET ++EIA A G + VI G D + P +
Sbjct: 202 AKLLT---GKET--LDEIA----DCFLACGV--KTVVIKTGKDGCFIKRGDXTXKVPAV- 249
Query: 238 LPKEKLVDTNGAGDAFVGGFLSQLVQEKPVEDCVRTGCYAANVVIQRSGCTYPPK 292
+DT GAGD F GF++ L++ K + +C R A + + G T K
Sbjct: 250 -AGITAIDTIGAGDNFASGFIAALLEGKNLRECARFANATAAISVLSVGATTGVK 303
>pdb|2FV7|A Chain A, Crystal Structure Of Human Ribokinase
pdb|2FV7|B Chain B, Crystal Structure Of Human Ribokinase
Length = 331
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 69/273 (25%), Positives = 123/273 (45%), Gaps = 27/273 (9%)
Query: 31 QIPGATSYIGCIGKDKFGEEMKKNSTAAGVNVKY-YEDESAPTGTCAVCVVGGERSLVAN 89
++ TS + +GKD FG + +N ++ ++ Y+ + A TGT ++ V ++++
Sbjct: 73 RLGAMTSMVCKVGKDSFGNDYIENLKQNDISTEFTYQTKDAATGTASIIVNNEGQNIIVI 132
Query: 90 LSAANCY-KSEHLKRPEIWSIVEKAKYYYIAGFFLTVSPESIQMVAEHAAAKNKVFMMNL 148
++ AN +E L+ +++ +AK L ++P + + A A ++ V +
Sbjct: 133 VAGANLLLNTEDLRAAA--NVISRAKVMVCQ---LEITPAT-SLEALTMARRSGVKTLFN 186
Query: 149 SAPFICEFFREPQEKALPYMDYVFGNETEARTFAKVHGWETDNVEEIALKISQWPKASGT 208
AP I + +PQ L D NE+EA + + E AL + +
Sbjct: 187 PAPAIADL--DPQFYTLS--DVFCCNESEAEILTGLTVGSAADAGEAALVLLKR------ 236
Query: 209 HKRITVITQGADPVVVAE--DGKVKLFPVILLPKEKLVDTNGAGDAFVGGFLSQLV--QE 264
++ +IT GA+ VV + + K P K K VDT GAGD+FVG L
Sbjct: 237 GCQVVIITLGAEGCVVLSQTEPEPKHIPT---EKVKAVDTTGAGDSFVGALAFYLAYYPN 293
Query: 265 KPVEDCVRTGCYAANVVIQRSGC--TYPPKPEF 295
+ED + + A V +Q +G +YP K +
Sbjct: 294 LSLEDMLNRSNFIAAVSVQAAGTQSSYPYKKDL 326
>pdb|1TZ6|A Chain A, Crystal Structure Of Aminoimidazole Riboside Kinase From
Salmonella Enterica Complexed With Aminoimidazole
Riboside And Atp Analog
pdb|1TZ6|B Chain B, Crystal Structure Of Aminoimidazole Riboside Kinase From
Salmonella Enterica Complexed With Aminoimidazole
Riboside And Atp Analog
Length = 339
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 67/262 (25%), Positives = 112/262 (42%), Gaps = 45/262 (17%)
Query: 16 GGATQNSIKVAQWMLQIPGATSYIGCIGKDKFGEEMKKNSTAAGVNVKYYEDESAPTGTC 75
GGA+ N V + ++ G +IGC+G D G +++ GV+V + ++ T
Sbjct: 50 GGASAN---VGVCVARLGGECGFIGCLGDDDAGRFLRQVFQDNGVDVTFLRLDADLTS-- 104
Query: 76 AVCVVG----GERSLVANLS-AANCYKSEHLKRPEIWSIVEKAKYYYIAGFFLTVSP--- 127
AV +V GERS + A+ Y S P+ + +++Y + LT P
Sbjct: 105 AVLIVNLTADGERSFTYLVHPGADTYVS-----PQDLPPFRQYEWFYFSSIGLTDRPARE 159
Query: 128 ---ESIQMVAEHAAAKNKVFMMNLSAPFICEFFREPQEKALPYMDYVFGNETEARTFAKV 184
E + + E A +F +NL + P+ A + A +
Sbjct: 160 ACLEGARRMRE--AGGYVLFDVNLRSKMWGNTDEIPELIA------------RSAALASI 205
Query: 185 HGWETDNVEEIALKISQWPKASGTHKRI----TVITQGAD-PVVVAEDGKVKLFPVILLP 239
D + +++ S W A + + T+I+ GAD +++ +G+ FP P
Sbjct: 206 CKVSADELCQLS-GASHWQDARYYLRDLGCDTTIISLGADGALLITAEGEFH-FPA---P 260
Query: 240 KEKLVDTNGAGDAFVGGFLSQL 261
+ +VDT GAGDAFVGG L L
Sbjct: 261 RVDVVDTTGAGDAFVGGLLFTL 282
>pdb|1TYY|A Chain A, Crystal Structure Of Aminoimidazole Riboside Kinase From
Salmonella Enterica
pdb|1TYY|B Chain B, Crystal Structure Of Aminoimidazole Riboside Kinase From
Salmonella Enterica
pdb|1TZ3|A Chain A, Crystal Structure Of Aminoimidazole Riboside Kinase
Complexed With Aminoimidazole Riboside
pdb|1TZ3|B Chain B, Crystal Structure Of Aminoimidazole Riboside Kinase
Complexed With Aminoimidazole Riboside
Length = 339
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 67/262 (25%), Positives = 111/262 (42%), Gaps = 45/262 (17%)
Query: 16 GGATQNSIKVAQWMLQIPGATSYIGCIGKDKFGEEMKKNSTAAGVNVKYYEDESAPTGTC 75
GGA+ N V + ++ G +IGC+G D G +++ GV+V + ++ T
Sbjct: 50 GGASAN---VGVCVARLGGECGFIGCLGDDDAGRFLRQVFQDNGVDVTFLRLDADLTS-- 104
Query: 76 AVCVVG----GERSLVANLS-AANCYKSEHLKRPEIWSIVEKAKYYYIAGFFLTVSP--- 127
AV +V GERS + A+ Y S P+ + +++Y + LT P
Sbjct: 105 AVLIVNLTADGERSFTYLVHPGADTYVS-----PQDLPPFRQYEWFYFSSIGLTDRPARE 159
Query: 128 ---ESIQMVAEHAAAKNKVFMMNLSAPFICEFFREPQEKALPYMDYVFGNETEARTFAKV 184
E + E A +F +NL + K D + + A +
Sbjct: 160 ACLEGARRXRE--AGGYVLFDVNL------------RSKXWGNTDEIPELIARSAALASI 205
Query: 185 HGWETDNVEEIALKISQWPKASGTHKRI----TVITQGAD-PVVVAEDGKVKLFPVILLP 239
D + +++ S W A + + T+I+ GAD +++ +G+ FP P
Sbjct: 206 CKVSADELCQLS-GASHWQDARYYLRDLGCDTTIISLGADGALLITAEGEFH-FPA---P 260
Query: 240 KEKLVDTNGAGDAFVGGFLSQL 261
+ +VDT GAGDAFVGG L L
Sbjct: 261 RVDVVDTTGAGDAFVGGLLFTL 282
>pdb|1V19|A Chain A, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
pdb|1V19|B Chain B, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
pdb|1V1A|A Chain A, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
With Bound 2-Keto-3-Deoxygluconate And Adp
pdb|1V1A|B Chain B, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
With Bound 2-Keto-3-Deoxygluconate And Adp
pdb|1V1B|A Chain A, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
With Bound Atp
pdb|1V1B|B Chain B, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
With Bound Atp
pdb|1V1B|C Chain C, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
With Bound Atp
pdb|1V1B|D Chain D, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
With Bound Atp
pdb|1V1S|A Chain A, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
(Crystal Form 2)
pdb|1V1S|B Chain B, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
(Crystal Form 2)
pdb|1V1S|C Chain C, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
(Crystal Form 2)
pdb|1V1S|D Chain D, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
(Crystal Form 2)
pdb|1V1S|E Chain E, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
(Crystal Form 2)
pdb|1V1S|F Chain F, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
(Crystal Form 2)
Length = 309
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 74/297 (24%), Positives = 122/297 (41%), Gaps = 48/297 (16%)
Query: 5 LASKENVEYIAGGATQNSIKVAQWMLQIPGATSYIGCIGKDKFGEEMKKNSTAAGVNVKY 64
L K +E GGA N VA + ++ ++G +G+D+ G +++ A GV++ +
Sbjct: 22 LRGKRLLEVYVGGAEVN---VAVALARLGVKVGFVGRVGEDELGAMVEERLRAEGVDLTH 78
Query: 65 YEDESAPTGTCA--VCVVGGERSLVANLSAANCYKSEHLKRPEIWSIVEKAKYYYIAGFF 122
+ TG +G R +A + P+ +E ++ +++G
Sbjct: 79 FRRAPGFTGLYLREYLPLGQGRVFYYRKGSAGSALAPGAFDPDY---LEGVRFLHLSGIT 135
Query: 123 LTVSPES--IQMVAEHAAAKNKV-------FMMNLSAPFICEFFREPQEKALPYMDYVFG 173
+SPE+ + A A + V + L +P E R E+ALP +D +F
Sbjct: 136 PALSPEARAFSLWAMEEAKRRGVRVSLDVNYRQTLWSP---EEARGFLERALPGVDLLFL 192
Query: 174 NETEART-FAKVHGWETDNVEEIALKISQWPKASGTHKRITVITQGADPVVVAEDGKV-- 230
+E EA F +V E AL+ P+ V+ +GA DG+
Sbjct: 193 SEEEAELLFGRV---------EEALRALSAPE--------VVLKRGAKGAWAFVDGRRVE 235
Query: 231 -KLFPVILLPKEKLVDTNGAGDAFVGGFLSQLVQEKPVEDCVRTG-CYAANVVIQRS 285
F V + VD GAGDAF G+L+ V PVE+ +R A+V R
Sbjct: 236 GSAFAV------EAVDPVGAGDAFAAGYLAGAVWGLPVEERLRLANLLGASVAASRG 286
>pdb|1VM7|A Chain A, Crystal Structure Of Ribokinase (Tm0960) From Thermotoga
Maritima At 2.15 A Resolution
pdb|1VM7|B Chain B, Crystal Structure Of Ribokinase (Tm0960) From Thermotoga
Maritima At 2.15 A Resolution
Length = 311
Score = 47.4 bits (111), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 64/260 (24%), Positives = 104/260 (40%), Gaps = 30/260 (11%)
Query: 38 YIGCIGKDKFGEEMKKNSTAAGVNVKYYEDESAPTGTCAVCVVGGERSLVANLSAANCYK 97
++ CIG D + + + +N G+ Y S PTG + V ++ + AN
Sbjct: 71 FVTCIGNDDYSDLLIENYEKLGIT--GYIRVSLPTGRAFIEVDKTGQNRIIIFPGANA-- 126
Query: 98 SEHLKRPEI-WSIVEKAKYYYIAGFFLTVSPESIQMVAEHAAAKNKVFMMNLSAPFICEF 156
LK+ I W+ + ++ L + + E A N + + + AP
Sbjct: 127 --ELKKELIDWNTLSESD------ILLLQNEIPFETTLECAKRFNGIVIFD-PAPA---- 173
Query: 157 FREPQEKALPYMDYVFGNETEARTFAKVHGWETDNVEEIALKISQWPKASGTHKRITVIT 216
+ E+ Y+DY+ NE E +K E VE+ A K + + ++
Sbjct: 174 -QGINEEIFQYLDYLTPNEKEIEALSKDFFGEFLTVEKAAEKFLELGVKN------VIVK 226
Query: 217 QGADPVVVAEDGKVKLFPVILLPKEKLVDTNGAGDAFVGGFLSQLVQEKPVEDCVRTGCY 276
G V++ + K FP K K VDT AGD F G F L + K E+ V G
Sbjct: 227 LGDKGVLLVNKNEKKHFPTF---KVKAVDTTAAGDVFNGAFAVALSEGKNPEEAVIFGTA 283
Query: 277 AANVVIQRSGC--TYPPKPE 294
AA + + R G + P + E
Sbjct: 284 AAAISVTRLGAQSSIPAREE 303
>pdb|2NWH|A Chain A, Carbohydrate Kinase From Agrobacterium Tumefaciens
Length = 317
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 62/130 (47%), Gaps = 21/130 (16%)
Query: 164 ALPYMDYVFGNETEARTFAKVHGWETDNVEEIALKISQWP---KASGTHKRITVITQGAD 220
AL +D +F NE EAR E A + WP + +G V+T+GA
Sbjct: 179 ALGDIDILFMNEAEARALTG----------ETAENVRDWPNILRKAGLSG--GVVTRGAS 226
Query: 221 PVVVAEDG--KVKLFPVILLPKEKLVDTNGAGDAFVGGFLSQLVQEKPVEDCVRTGCYAA 278
VV A +G K L P ++ ++ D GAGDA G+L+ + + K + + +R G AA
Sbjct: 227 EVV-AFNGTEKAILHPPLI---REVKDVTGAGDAMASGYLAAIAEGKTIREALRQGAAAA 282
Query: 279 NVVIQRSGCT 288
+ +Q S T
Sbjct: 283 AITVQSSFAT 292
>pdb|2C49|A Chain A, Crystal Structure Of Methanocaldococcus Jannaschii
Nucleoside Kinase - An Archaeal Member Of The Ribokinase
Family
pdb|2C49|B Chain B, Crystal Structure Of Methanocaldococcus Jannaschii
Nucleoside Kinase - An Archaeal Member Of The Ribokinase
Family
pdb|2C4E|A Chain A, Crystal Structure Of Methanocaldococcus Jannaschii
Nucleoside Kinase - An Archaeal Member Of The Ribokinase
Family
Length = 302
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 65/135 (48%), Gaps = 20/135 (14%)
Query: 155 EFFREPQEKALPYMDYVFGNETEARTFAKVHGWETDNVEEI--ALKISQWPKASGTHKRI 212
++ +E + + + +++F N+ E + + +E D+ E AL +++ K S
Sbjct: 167 QYSKEMLLEIIEHTNFLFMNKHEFERASNLLNFEIDDYLERVDALIVTKGSKGS------ 220
Query: 213 TVITQGADPVVVAEDGKVKLFPVILLPKEKLVDTNGAGDAFVGGFLSQLVQEKPVEDCVR 272
V+ +D K+++ P I K++D GAGD++ GFLS V+ +E C
Sbjct: 221 ---------VIYTKDKKIEI-PCI--KAGKVIDPTGAGDSYRAGFLSAYVKGYDLEKCGL 268
Query: 273 TGCYAANVVIQRSGC 287
G A+ V++ GC
Sbjct: 269 IGAATASFVVEAKGC 283
>pdb|3Q1Y|A Chain A, Allosteric Regulation By Lysine Residue: A Novel
Anion-Hole Formation In The Ribokinase Family
Length = 320
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 5/74 (6%)
Query: 214 VITQGADPVVVAEDGKVKLFPVILLPKEKLVDTNGAGDAFVGGFLSQLVQEKPVEDCVR- 272
V++ GA + A +GK L+ VI PK + + GAGD FVG F++ L P+ + ++
Sbjct: 219 VVSLGAKGSICAHNGK--LYQVIP-PKVQERNDTGAGDVFVGAFIAGLAMNMPITETLKV 275
Query: 273 -TGCYAANVVIQRS 285
TGC A+ V+ Q S
Sbjct: 276 ATGCSASAVMQQDS 289
>pdb|3HIC|A Chain A, The Crystal Structure Of Phosphofructokinase(Lin2199)from
Listeria Innocua
pdb|3IE7|A Chain A, The Crystal Structure Of Phosphofructokinase (Lin2199)
From Listeria Innocua In Complex With Atp At 1.6a
pdb|3JUL|A Chain A, Crystal Structure Of Listeria Innocua
D-Tagatose-6-Phosphate Kinase Bound With Substrate
Length = 320
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 42/74 (56%), Gaps = 5/74 (6%)
Query: 214 VITQGADPVVVAEDGKVKLFPVILLPKEKLVDTNGAGDAFVGGFLSQLVQEKPVEDCVR- 272
V++ GA + A +GK L+ VI PK + + GAGD FVG F++ L P+ + ++
Sbjct: 219 VVSLGAKGSICAHNGK--LYQVIP-PKVQERNDTGAGDVFVGAFIAGLAXNXPITETLKV 275
Query: 273 -TGCYAANVVIQRS 285
TGC A+ V Q S
Sbjct: 276 ATGCSASKVXQQDS 289
>pdb|3B3L|A Chain A, Crystal Structures Of Alternatively-Spliced Isoforms Of
Human Ketohexokinase
pdb|3B3L|B Chain B, Crystal Structures Of Alternatively-Spliced Isoforms Of
Human Ketohexokinase
pdb|3B3L|C Chain C, Crystal Structures Of Alternatively-Spliced Isoforms Of
Human Ketohexokinase
pdb|3B3L|D Chain D, Crystal Structures Of Alternatively-Spliced Isoforms Of
Human Ketohexokinase
Length = 298
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 58/272 (21%), Positives = 107/272 (39%), Gaps = 35/272 (12%)
Query: 16 GGATQNSIKVAQWMLQIPGA-TSYIGCIGKDKFGEEMKKNSTAAGVNVK---YYEDESAP 71
GG NS V L + GA +++G + + + + GV+V + P
Sbjct: 40 GGNASNSCTV----LSLLGAPCAFMGSMAPGHVADFLVADFRRRGVDVSQVAWQSKGDTP 95
Query: 72 TGTCAVCVVGGERSLVANLSAANCYKSEHLKRPEIWSIVEKAKYYYIAGFFLTVSPESIQ 131
+ C + G R++V + ++ + ++ ++ + K+ +I G + + +Q
Sbjct: 96 SSCCIINNSNGNRTIVLHDTSLPDVSATDFEKVDL----TQFKWIHIEGRNASEQVKMLQ 151
Query: 132 MVAEHAAAKNKVFMMNLSAPFICEFFREPQEKALPYMDYVFGNETEARTFAKVHGWET-- 189
+ H + + +S E RE + Y D VF ++ A+ E
Sbjct: 152 RIDAHNTRQPPEQKIRVSVEV--EKPREELFQLFGYGDVVFVSKDVAKHLGFQSAEEALR 209
Query: 190 ---DNVEEIALKISQWPKASGTHKRITVITQGADPVVVAEDGKVKLFPVILLPKEKLVDT 246
V + A+ + W + +GAD + DGK L P ++VDT
Sbjct: 210 GLYGRVRKGAVLVCAWAE------------EGAD--ALGPDGK--LLHSDAFPPPRVVDT 253
Query: 247 NGAGDAFVGGFLSQLVQEKPVEDCVRTGCYAA 278
GAGD F + L Q + V++ +R GC A
Sbjct: 254 LGAGDTFNASVIFSLSQGRSVQEALRFGCQVA 285
>pdb|3NBV|A Chain A, X-Ray Structure Of Ketohexokinase In Complex With Amp-Pnp
And Fructose
pdb|3NBV|B Chain B, X-Ray Structure Of Ketohexokinase In Complex With Amp-Pnp
And Fructose
pdb|3NBW|A Chain A, X-Ray Structure Of Ketohexokinase In Complex With A
Pyrazole Compound
pdb|3NBW|B Chain B, X-Ray Structure Of Ketohexokinase In Complex With A
Pyrazole Compound
pdb|3NC2|A Chain A, X-Ray Structure Of Ketohexokinase With A Quinazoline
pdb|3NC2|B Chain B, X-Ray Structure Of Ketohexokinase With A Quinazoline
pdb|3NC9|A Chain A, X-Ray Structure Of Ketohexokinase Complexed With An
Indazole Compound
pdb|3NC9|B Chain B, X-Ray Structure Of Ketohexokinase Complexed With An
Indazole Compound
pdb|3NCA|A Chain A, X-Ray Structure Of Ketohexokinase In Complex With A Thieno
Pyridinol Compound
pdb|3NCA|B Chain B, X-Ray Structure Of Ketohexokinase In Complex With A Thieno
Pyridinol Compound
pdb|3RO4|A Chain A, X-Ray Structure Of Ketohexokinase In Complex With An
Indazole Compound Derivative
pdb|3RO4|B Chain B, X-Ray Structure Of Ketohexokinase In Complex With An
Indazole Compound Derivative
pdb|3Q92|A Chain A, X-Ray Structure Of Ketohexokinase In Complex With A
Pyrimidopyrimidine Analog 1
pdb|3Q92|B Chain B, X-Ray Structure Of Ketohexokinase In Complex With A
Pyrimidopyrimidine Analog 1
pdb|3QA2|A Chain A, X-Ray Structure Of Ketohexokinase In Complex With A
Pyrimidopyrimidine Analog 2
pdb|3QA2|B Chain B, X-Ray Structure Of Ketohexokinase In Complex With A
Pyrimidopyrimidine Analog 2
pdb|3QAI|A Chain A, X-Ray Structure Of Ketohexokinase In Complex With A
Pyrimidopyrimidine Analog 3
pdb|3QAI|B Chain B, X-Ray Structure Of Ketohexokinase In Complex With A
Pyrimidopyrimidine Analog 3
Length = 313
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 58/272 (21%), Positives = 107/272 (39%), Gaps = 35/272 (12%)
Query: 16 GGATQNSIKVAQWMLQIPGA-TSYIGCIGKDKFGEEMKKNSTAAGVNVK---YYEDESAP 71
GG NS V L + GA +++G + + + + GV+V + P
Sbjct: 55 GGNASNSCTV----LSLLGAPCAFMGSMAPGHVADFLVADFRRRGVDVSQVAWQSKGDTP 110
Query: 72 TGTCAVCVVGGERSLVANLSAANCYKSEHLKRPEIWSIVEKAKYYYIAGFFLTVSPESIQ 131
+ C + G R++V + ++ + ++ ++ + K+ +I G + + +Q
Sbjct: 111 SSCCIINNSNGNRTIVLHDTSLPDVSATDFEKVDL----TQFKWIHIEGRNASEQVKMLQ 166
Query: 132 MVAEHAAAKNKVFMMNLSAPFICEFFREPQEKALPYMDYVFGNETEARTFAKVHGWET-- 189
+ H + + +S E RE + Y D VF ++ A+ E
Sbjct: 167 RIDAHNTRQPPEQKIRVSVEV--EKPREELFQLFGYGDVVFVSKDVAKHLGFQSAEEALR 224
Query: 190 ---DNVEEIALKISQWPKASGTHKRITVITQGADPVVVAEDGKVKLFPVILLPKEKLVDT 246
V + A+ + W + +GAD + DGK L P ++VDT
Sbjct: 225 GLYGRVRKGAVLVCAWAE------------EGAD--ALGPDGK--LLHSDAFPPPRVVDT 268
Query: 247 NGAGDAFVGGFLSQLVQEKPVEDCVRTGCYAA 278
GAGD F + L Q + V++ +R GC A
Sbjct: 269 LGAGDTFNASVIFSLSQGRSVQEALRFGCQVA 300
>pdb|4DU5|A Chain A, Crystal Structure Of Pfkb Protein From Polaromonas Sp.
Js666
pdb|4DU5|B Chain B, Crystal Structure Of Pfkb Protein From Polaromonas Sp.
Js666
pdb|4DU5|C Chain C, Crystal Structure Of Pfkb Protein From Polaromonas Sp.
Js666
pdb|4DU5|D Chain D, Crystal Structure Of Pfkb Protein From Polaromonas Sp.
Js666
Length = 336
Score = 37.4 bits (85), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 36/74 (48%), Gaps = 7/74 (9%)
Query: 225 AEDGKVKLFPVILLPKEKLVDTNGAGDAFVGGFLSQLVQEKPVEDCVRTGCYAANVVIQR 284
A G+V FPV ++VDT GAGD F G +S L+ V + V+ G + +Q
Sbjct: 264 AGSGRVAGFPV-----AEVVDTVGAGDGFAVGVISALLDGLGVPEAVKRGAWIGARAVQV 318
Query: 285 SGCT--YPPKPEFN 296
G + P + E N
Sbjct: 319 LGDSEGLPTRAELN 332
>pdb|2PKF|A Chain A, Crystal Structure Of M Tuberculosis Adenosine Kinase (Apo)
pdb|2PKF|B Chain B, Crystal Structure Of M Tuberculosis Adenosine Kinase (Apo)
pdb|2PKK|A Chain A, Crystal Structure Of M Tuberculosis Adenosine Kinase
Complexed With 2- Fluro Adenosine
pdb|2PKN|A Chain A, Crystal Structure Of M Tuberculosis Adenosine Kinase
Complexed With Amp-Pcp (Non-Hydrolyzable Atp Analog)
pdb|2PKM|A Chain A, Crystal Structure Of M Tuberculosis Adenosine Kinase
Complexed With Adenosine
Length = 334
Score = 37.0 bits (84), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 52/119 (43%), Gaps = 17/119 (14%)
Query: 170 YVFGNETEARTFAKVHGW-ETDNVEEIALKISQWPKASGTHKRITVITQGADPVVVAEDG 228
Y+F N+ E GW E D + +I L+++ T+ +G D +V DG
Sbjct: 201 YLFTNDYEWDLLLSKTGWSEADVMAQIDLRVT------------TLGPKGVD--LVEPDG 246
Query: 229 KVKLFPVILLPKEKLVDTNGAGDAFVGGFLSQLVQEKPVEDCVRTGCYAANVVIQRSGC 287
V ++P+ D G GDAF GFL+ +E + G A +V++ +G
Sbjct: 247 TT--IHVGVVPETSQTDPTGVGDAFRAGFLTGRSAGLGLERSAQLGSLVAVLVLESTGT 303
>pdb|2HQQ|A Chain A, Crystal Structure Of Human Ketohexokinase Complexed To
Different Sugar Molecules
pdb|2HW1|A Chain A, Crystal Structure Of Human Ketohexokinase Complexed To
Different Sugar Molecules
Length = 298
Score = 36.6 bits (83), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
Query: 217 QGADPVVVAEDGKVKLFPVILLPKEKLVDTNGAGDAFVGGFLSQLVQEKPVEDCVRTGCY 276
+GAD + DGK L P ++VDT GAGD F + L Q + V++ +R GC
Sbjct: 228 EGAD--ALGPDGK--LLHSDAFPPPRVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQ 283
Query: 277 AA 278
A
Sbjct: 284 VA 285
>pdb|2HLZ|A Chain A, Crystal Structure Of Human Ketohexokinase (Casp Target)
pdb|2HLZ|B Chain B, Crystal Structure Of Human Ketohexokinase (Casp Target)
pdb|2HLZ|C Chain C, Crystal Structure Of Human Ketohexokinase (Casp Target)
pdb|2HLZ|D Chain D, Crystal Structure Of Human Ketohexokinase (Casp Target)
Length = 312
Score = 36.6 bits (83), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
Query: 217 QGADPVVVAEDGKVKLFPVILLPKEKLVDTNGAGDAFVGGFLSQLVQEKPVEDCVRTGCY 276
+GAD + DGK L P ++VDT GAGD F + L Q + V++ +R GC
Sbjct: 242 EGAD--ALGPDGK--LLHSDAFPPPRVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQ 297
Query: 277 AAN 279
A
Sbjct: 298 VAG 300
>pdb|3RY7|A Chain A, Crystal Sructure Of Sa239
Length = 304
Score = 36.2 bits (82), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 240 KEKLVDTNGAGDAFVGGFLSQLVQEKP-VEDCVRTGCYAANVVIQRSGC 287
K +DT AGD F+G F+S+L + + + D + G A+++ +Q+ G
Sbjct: 243 KVNAIDTTAAGDTFIGAFVSRLNKSQDNLADAIDFGNKASSLTVQKHGA 291
>pdb|3B1N|A Chain A, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Adp-Mizoribine
pdb|3B1N|B Chain B, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Adp-Mizoribine
pdb|3B1O|A Chain A, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Ligand-Free Form
pdb|3B1O|B Chain B, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Ligand-Free Form
pdb|3B1P|A Chain A, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Adp-Inosine
pdb|3B1Q|A Chain A, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Inosine
pdb|3B1Q|B Chain B, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Inosine
pdb|3B1Q|C Chain C, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Inosine
pdb|3B1Q|D Chain D, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Inosine
pdb|3B1Q|E Chain E, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Inosine
pdb|3B1Q|F Chain F, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Inosine
Length = 326
Score = 35.8 bits (81), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 32/141 (22%), Positives = 53/141 (37%), Gaps = 28/141 (19%)
Query: 125 VSPESIQMVAEHAAAKNKVFMMNLSAPFICE-------FFREPQEKALPYMDYVFGNETE 177
V P+ Q + +H + PFI + F +++ Y+ N+ E
Sbjct: 141 VGPDGFQGMVQHTEE-----LAQAGVPFIFDPGQGLPLFDGATLRRSIELATYIAVNDYE 195
Query: 178 ARTFAKVHGWETDNVEEIALKISQWPKASGTHKRITVITQGADPVVVAEDGKVKLFPVIL 237
A+ GW D EIA ++ +IT+G + + P +
Sbjct: 196 AKLVCDKTGWSED---EIASRVQAL-----------IITRGEHGATIRHRDGTEQIPAV- 240
Query: 238 LPKEKLVDTNGAGDAFVGGFL 258
E+++D G GDAF GG L
Sbjct: 241 -RAERVIDPTGCGDAFRGGLL 260
>pdb|3B1R|A Chain A, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Amp-Mg-Amp
pdb|3B1R|B Chain B, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Amp-Mg-Amp
pdb|3B1R|C Chain C, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Amp-Mg-Amp
pdb|3B1R|D Chain D, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Amp-Mg-Amp
pdb|3B1R|E Chain E, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Amp-Mg-Amp
pdb|3B1R|F Chain F, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Amp-Mg-Amp
Length = 320
Score = 35.4 bits (80), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 32/141 (22%), Positives = 53/141 (37%), Gaps = 28/141 (19%)
Query: 125 VSPESIQMVAEHAAAKNKVFMMNLSAPFICE-------FFREPQEKALPYMDYVFGNETE 177
V P+ Q + +H + PFI + F +++ Y+ N+ E
Sbjct: 149 VGPDGFQGMVQHTEE-----LAQAGVPFIFDPGQGLPLFDGATLRRSIELATYIAVNDYE 203
Query: 178 ARTFAKVHGWETDNVEEIALKISQWPKASGTHKRITVITQGADPVVVAEDGKVKLFPVIL 237
A+ GW D EIA ++ +IT+G + + P +
Sbjct: 204 AKLVCDKTGWSED---EIASRVQAL-----------IITRGEHGATIRHRDGTEQIPAV- 248
Query: 238 LPKEKLVDTNGAGDAFVGGFL 258
E+++D G GDAF GG L
Sbjct: 249 -RAERVIDPTGCGDAFRGGLL 268
>pdb|3HJ6|A Chain A, Structure Of Halothermothrix Orenii Fructokinase (Frk)
pdb|3HJ6|B Chain B, Structure Of Halothermothrix Orenii Fructokinase (Frk)
Length = 327
Score = 34.7 bits (78), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 6/70 (8%)
Query: 223 VVAEDGKVKLFPVILLP--KEKLVDTNGAGDAFVGGFLSQLVQEKPVEDCVRTGCYAANV 280
V+A DG+ +I +P E VD GAGDAF GF+ L+ V+ ++ G A
Sbjct: 249 VIASDGE----EIIRIPAFSEDAVDVTGAGDAFWSGFICGLLDGYTVKRSIKLGNGVAAF 304
Query: 281 VIQRSGCTYP 290
I+ G P
Sbjct: 305 KIRGVGALSP 314
>pdb|3KZH|A Chain A, Crystal Structure Of A Putative Sugar Kinase From
Clostridium Perfringens
pdb|3KZH|B Chain B, Crystal Structure Of A Putative Sugar Kinase From
Clostridium Perfringens
Length = 328
Score = 34.7 bits (78), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 61/291 (20%), Positives = 113/291 (38%), Gaps = 52/291 (17%)
Query: 16 GGATQNSIKVAQWMLQIPGATSYIGCIGKDKFGEEMKKNSTAAGVNVKYYEDES------ 69
GG +N +A+ ++ T++ +G D+ G+ + ++S G Y+ D+S
Sbjct: 42 GGVCRN---IAENXARVGVNTNFXSILGNDEHGKSIVEHSKKIG----YHXDDSXVIEGG 94
Query: 70 -APTGTCAVCVVGGERSLVANLSAANCYKSEHLKRPEIWSIVEKAKYYYIAGFFLTVSPE 128
PT + G S +A+ + ++ + I E A+Y + + +PE
Sbjct: 95 STPTYLAILDENGEXVSAIADXKSIGAXNTDFIDSKR--EIFENAEYTVLD----SDNPE 148
Query: 129 SIQMVAEHAAAKNKVFMMNLSAPFICEFFREPQEKA------LPYMDYVFGNETEARTFA 182
+ + ++ K + +SA EKA + + N EA A
Sbjct: 149 IXEYLLKNFKDKTNFILDPVSA-----------EKASWVKHLIKDFHTIKPNRHEAEILA 197
Query: 183 KVHGWETDNVEEIALKISQWPKASGTHKRITVITQGADPVVVAED---GKVKLFPVILLP 239
+TD++ +K S + G K I+ AD + + GK+K V
Sbjct: 198 GFPITDTDDL----IKASNYFLGLGIKK--VFISLDADGIFYNDGVSCGKIKATEV---- 247
Query: 240 KEKLVDTNGAGDAFVGGFLSQLVQEKPVEDCVRTGCYAANVVIQRSGCTYP 290
+ + GAGD+FV G + P+ED V+ +N+ I +P
Sbjct: 248 --DVKNVTGAGDSFVAGLGYGYXNKXPIEDIVKFAXTXSNITISHEETIHP 296
>pdb|3BF5|A Chain A, Crystal Structure Of Putative Ribokinase (10640157) From
Thermoplasma Acidophilum At 1.91 A Resolution
pdb|3BF5|B Chain B, Crystal Structure Of Putative Ribokinase (10640157) From
Thermoplasma Acidophilum At 1.91 A Resolution
Length = 306
Score = 33.9 bits (76), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 32/74 (43%), Gaps = 4/74 (5%)
Query: 210 KRITVITQGADPVVVAEDGKVKLFPVILLPKEKLVDTNGAGDAFVGGFLSQLVQEKPVED 269
K T++T G + DGK FP I P DT GAGD+F G L + +E
Sbjct: 209 KVTTIVTNGERGSSLFXDGKKYDFPAI--PSSG--DTVGAGDSFRAGLYLALYNRRSIEK 264
Query: 270 CVRTGCYAANVVIQ 283
G A+ VI
Sbjct: 265 GXIYGTIIAHHVID 278
>pdb|3KD6|A Chain A, Crystal Structure Of Nucleoside Kinase From Chlorobium
Tepidum In Complex With Amp
pdb|3KD6|B Chain B, Crystal Structure Of Nucleoside Kinase From Chlorobium
Tepidum In Complex With Amp
Length = 313
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 45/105 (42%), Gaps = 13/105 (12%)
Query: 159 EPQEKALPYMDYVFGNETEARTFAKVHGWETDNVEEIALKISQWPKASGTHKRITVITQG 218
E +K L +D N++EAR + + +K ++ + G + +I +G
Sbjct: 160 EELKKVLARVDVFIVNDSEARLLSG---------DPNLVKTARIIREXG--PKTLIIKKG 208
Query: 219 ADPVVVAEDGKVKLFPVILLPKEKLVDTNGAGDAFVGGFLSQLVQ 263
++ D + F P E + D GAGD F GGF+ L +
Sbjct: 209 EHGALLFTDNGI--FAAPAFPLESIYDPTGAGDTFAGGFIGHLAR 251
>pdb|2QHP|A Chain A, Crystal Structure Of Fructokinase (Np_810670.1) From
Bacteroides Thetaiotaomicron Vpi-5482 At 1.80 A
Resolution
Length = 296
Score = 33.1 bits (74), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 33/145 (22%), Positives = 61/145 (42%), Gaps = 11/145 (7%)
Query: 142 KVFMMNLSAPFICEFFREPQEKALPYMDYVFGNETEARTFAKVHGWETDNVEEIALKISQ 201
K+F +NL F + +E ++ + + N+ E T ++ G+ I L+
Sbjct: 149 KIFDINLRQDF---YTKEVLRESFKRCNILKINDEELVTISRXFGYPG-----IDLQDKC 200
Query: 202 WPKASGTHKRITVITQGADPVVVAEDGKVKLFPVILLPKEKLVDTNGAGDAFVGGFLSQL 261
W + + + ++T G + V G V PK + DT GAGD+F F + +
Sbjct: 201 WILLAKYNLKXLILTCGINGSYVFTPGVVSFQET---PKVPVADTVGAGDSFTAAFCASI 257
Query: 262 VQEKPVEDCVRTGCYAANVVIQRSG 286
+ K V + + + V +SG
Sbjct: 258 LNGKSVPEAHKLAVEVSAYVCTQSG 282
>pdb|2V78|A Chain A, Crystal Structure Of Sulfolobus Solfataricus 2-Keto-3-
Deoxygluconate Kinase
pdb|2V78|B Chain B, Crystal Structure Of Sulfolobus Solfataricus 2-Keto-3-
Deoxygluconate Kinase
pdb|2V78|C Chain C, Crystal Structure Of Sulfolobus Solfataricus 2-Keto-3-
Deoxygluconate Kinase
pdb|2VAR|A Chain A, Crystal Structure Of Sulfolobus Solfataricus 2-Keto-3-
Deoxygluconate Kinase Complexed With 2-Keto-3-
Deoxygluconate
pdb|2VAR|B Chain B, Crystal Structure Of Sulfolobus Solfataricus 2-Keto-3-
Deoxygluconate Kinase Complexed With 2-Keto-3-
Deoxygluconate
pdb|2VAR|C Chain C, Crystal Structure Of Sulfolobus Solfataricus 2-Keto-3-
Deoxygluconate Kinase Complexed With 2-Keto-3-
Deoxygluconate
Length = 313
Score = 33.1 bits (74), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 23/42 (54%)
Query: 245 DTNGAGDAFVGGFLSQLVQEKPVEDCVRTGCYAANVVIQRSG 286
D GAGDA G F+S +Q K +E + G A+ +VI G
Sbjct: 252 DPTGAGDAMAGTFVSLYLQGKDIEYSLAHGIAASTLVITVRG 293
>pdb|2ABQ|A Chain A, Crystal Structure Of Fructose-1-Phosphate Kinase From
Bacillus Halodurans
pdb|2ABQ|B Chain B, Crystal Structure Of Fructose-1-Phosphate Kinase From
Bacillus Halodurans
Length = 306
Score = 33.1 bits (74), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 36/64 (56%), Gaps = 6/64 (9%)
Query: 214 VITQGADPVVVAEDGKVKLFPV------ILLPKEKLVDTNGAGDAFVGGFLSQLVQEKPV 267
+I +G + ++V+ G LF + +P ++ ++ GAGD+ V GFL+ L + K +
Sbjct: 206 LIGEGIESILVSFAGDGALFASAEGXFHVNVPSGEVRNSVGAGDSVVAGFLAALQEGKSL 265
Query: 268 EDCV 271
ED V
Sbjct: 266 EDAV 269
>pdb|3GBU|A Chain A, Crystal Structure Of An Uncharacterized Sugar Kinase
Ph1459 From Pyrococcus Horikoshii In Complex With Atp
pdb|3GBU|B Chain B, Crystal Structure Of An Uncharacterized Sugar Kinase
Ph1459 From Pyrococcus Horikoshii In Complex With Atp
pdb|3GBU|C Chain C, Crystal Structure Of An Uncharacterized Sugar Kinase
Ph1459 From Pyrococcus Horikoshii In Complex With Atp
pdb|3GBU|D Chain D, Crystal Structure Of An Uncharacterized Sugar Kinase
Ph1459 From Pyrococcus Horikoshii In Complex With Atp
pdb|3IH0|A Chain A, Crystal Structure Of An Uncharacterized Sugar Kinase
Ph1459 From Pyrococcus Horikoshii In Complex With
Amp-Pnp
pdb|3IH0|B Chain B, Crystal Structure Of An Uncharacterized Sugar Kinase
Ph1459 From Pyrococcus Horikoshii In Complex With
Amp-Pnp
Length = 313
Score = 32.7 bits (73), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 62/249 (24%), Positives = 102/249 (40%), Gaps = 33/249 (13%)
Query: 16 GGATQNSIKVAQWMLQIPGATSYIGCIGKDKFGEEMKKNSTAAGVNVK-YYEDESAPTGT 74
GGA N VA + ++ +S I +G D FGE + + + V+ + +DE TG
Sbjct: 33 GGAPAN---VAVGVSRLGVKSSLISKVGNDPFGEYLIEELSKENVDTRGIVKDEKKHTGI 89
Query: 75 CAVCVVGGERSLVANLSAANCYKSEHLKRPEIWSIVEKAKYYYIAGFFLTVSP--ESIQM 132
V + G S + L Y + L W IVE+AK L +P E++
Sbjct: 90 VFVQLKGASPSFL--LYDDVAYFNXTLNDIN-WDIVEEAKIVNFGSVILARNPSRETVXK 146
Query: 133 VAEHAAAKNKV-FMMNLSAPFICEFFREPQEKALPYMDYVFGNETEARTFAKVHGWETDN 191
V + + + F +NL + +R +E+ + + E + V E
Sbjct: 147 VIKKIKGSSLIAFDVNLR----LDLWRGQEEEXIKVL------EESIKLADIVKASE--- 193
Query: 192 VEEIALKISQWPKASGTHKRITVITQGADPVVVAEDGKVKLFPVILLPKEKL--VDTNGA 249
EE+ +Q + G+ +T IT G + +K V+ +P + +DT GA
Sbjct: 194 -EEVLYLENQGVEVKGSX--LTAITLGPKGFRL-----IKNETVVDVPSYNVNPLDTTGA 245
Query: 250 GDAFVGGFL 258
GDAF L
Sbjct: 246 GDAFXAALL 254
>pdb|3EWM|A Chain A, Crystal Structure Of An Uncharacterized Sugar Kinase
Ph1459 From Pyrococcus Horikoshii
pdb|3EWM|B Chain B, Crystal Structure Of An Uncharacterized Sugar Kinase
Ph1459 From Pyrococcus Horikoshii
Length = 313
Score = 32.3 bits (72), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 62/249 (24%), Positives = 102/249 (40%), Gaps = 33/249 (13%)
Query: 16 GGATQNSIKVAQWMLQIPGATSYIGCIGKDKFGEEMKKNSTAAGVNVK-YYEDESAPTGT 74
GGA N VA + ++ +S I +G D FGE + + + V+ + +DE TG
Sbjct: 33 GGAPAN---VAVGVSRLGVKSSLISKVGNDPFGEYLIEELSKENVDTRGIVKDEKKHTGI 89
Query: 75 CAVCVVGGERSLVANLSAANCYKSEHLKRPEIWSIVEKAKYYYIAGFFLTVSP--ESIQM 132
V + G S + L Y + L W IVE+AK L +P E++
Sbjct: 90 VFVQLKGASPSFL--LYDDVAYFNXTLNDIN-WDIVEEAKIVNFGSVILARNPSRETVXK 146
Query: 133 VAEHAAAKNKV-FMMNLSAPFICEFFREPQEKALPYMDYVFGNETEARTFAKVHGWETDN 191
V + + + F +NL + +R +E+ + + E + V E
Sbjct: 147 VIKKIKGSSLIAFDVNLR----LDLWRGQEEEXIKVL------EESIKLADIVKASE--- 193
Query: 192 VEEIALKISQWPKASGTHKRITVITQGADPVVVAEDGKVKLFPVILLPKEKL--VDTNGA 249
EE+ +Q + G+ +T IT G + +K V+ +P + +DT GA
Sbjct: 194 -EEVLYLENQGVEVKGSX--LTAITLGPKGCRL-----IKNETVVDVPSYNVNPLDTTGA 245
Query: 250 GDAFVGGFL 258
GDAF L
Sbjct: 246 GDAFXAALL 254
>pdb|3PL2|A Chain A, Crystal Structure Of A 5-Keto-2-Deoxygluconokinase
(Ncgl0155, Cgl0158) From Corynebacterium Glutamicum Atcc
13032 Kitasato At 1.89 A Resolution
pdb|3PL2|B Chain B, Crystal Structure Of A 5-Keto-2-Deoxygluconokinase
(Ncgl0155, Cgl0158) From Corynebacterium Glutamicum Atcc
13032 Kitasato At 1.89 A Resolution
pdb|3PL2|C Chain C, Crystal Structure Of A 5-Keto-2-Deoxygluconokinase
(Ncgl0155, Cgl0158) From Corynebacterium Glutamicum Atcc
13032 Kitasato At 1.89 A Resolution
pdb|3PL2|D Chain D, Crystal Structure Of A 5-Keto-2-Deoxygluconokinase
(Ncgl0155, Cgl0158) From Corynebacterium Glutamicum Atcc
13032 Kitasato At 1.89 A Resolution
Length = 319
Score = 32.0 bits (71), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 5/78 (6%)
Query: 212 ITVITQGADPVVV-AEDGKVKLFPVILLPKEKLVDTNGAGDAFVGGFLSQLVQEKPVEDC 270
+ ++ QG V +D V++ P + +++ GAGDAF G L+ E P+E
Sbjct: 229 LAIVKQGPKGVXAXTKDETVEVPPFFV----DVINGLGAGDAFGGALCHGLLSEWPLEKV 284
Query: 271 VRTGCYAANVVIQRSGCT 288
+R A +V R C+
Sbjct: 285 LRFANTAGALVASRLECS 302
>pdb|3LJS|A Chain A, Crystal Structure Of Fructokinase From Xylella Fastidiosa
pdb|3LJS|B Chain B, Crystal Structure Of Fructokinase From Xylella Fastidiosa
pdb|3LKI|A Chain A, Crystal Structure Of Fructokinase With Bound Atp From
Xylella Fastidiosa
pdb|3LKI|B Chain B, Crystal Structure Of Fructokinase With Bound Atp From
Xylella Fastidiosa
Length = 338
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 9/57 (15%)
Query: 211 RITVITQGADPV---VVAEDGKVKLFPVILLPKEKLVDTNGAGDAFVGGFLSQLVQE 264
++ ++T A PV G+V F V ++ D+N AGDAFVGG L Q+
Sbjct: 225 QLLLVTDAAGPVHWYTRTAGGEVPTFRV------QVQDSNAAGDAFVGGXLYTFAQQ 275
>pdb|3I3Y|A Chain A, Crystal Structure Of Ribokinase In Complex With D-Ribose
From Klebsiella Pneumoniae
pdb|3I3Y|B Chain B, Crystal Structure Of Ribokinase In Complex With D-Ribose
From Klebsiella Pneumoniae
pdb|3I3Y|C Chain C, Crystal Structure Of Ribokinase In Complex With D-Ribose
From Klebsiella Pneumoniae
pdb|3I3Y|D Chain D, Crystal Structure Of Ribokinase In Complex With D-Ribose
From Klebsiella Pneumoniae
pdb|3IKH|A Chain A, Crystal Structure Of Ribokinase In Complex With Atp And
Glycerol In The Active Site From Klebsiella Pneumoniae
pdb|3IKH|B Chain B, Crystal Structure Of Ribokinase In Complex With Atp And
Glycerol In The Active Site From Klebsiella Pneumoniae
pdb|3IKH|C Chain C, Crystal Structure Of Ribokinase In Complex With Atp And
Glycerol In The Active Site From Klebsiella Pneumoniae
pdb|3IKH|D Chain D, Crystal Structure Of Ribokinase In Complex With Atp And
Glycerol In The Active Site From Klebsiella Pneumoniae
Length = 299
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
Query: 211 RITVITQGADPVVVAEDGKVKLFPVILLPKEKLVDTNGAGDAF 253
+ VITQGA + ++G+ + P + P E L DT GAGD F
Sbjct: 197 KTLVITQGAAGAWLVQEGQRQFCPAV--PAEAL-DTTGAGDTF 236
>pdb|3GA2|A Chain A, Crystal Structure Of The Endonuclease_v (Bsu36170) From
Bacillus Subtilis, Northeast Structural Genomics
Consortium Target Sr624
Length = 246
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 10/29 (34%), Positives = 18/29 (62%)
Query: 55 STAAGVNVKYYEDESAPTGTCAVCVVGGE 83
+T AGV++ Y+E + P G C + V+ +
Sbjct: 40 NTTAGVDLAYWEQDGEPYGVCCIIVIDAD 68
>pdb|2OAJ|A Chain A, Crystal Structure Of Sro7 From S. Cerevisiae
Length = 902
Score = 29.3 bits (64), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 30/60 (50%)
Query: 162 EKALPYMDYVFGNETEARTFAKVHGWETDNVEEIALKISQWPKASGTHKRITVITQGADP 221
E +P DY+ + T A +KV+ +N E +L IS + G ++ +T+I G P
Sbjct: 255 EINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTP 314
>pdb|2DCN|A Chain A, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|2DCN|B Chain B, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|2DCN|C Chain C, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|2DCN|D Chain D, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|2DCN|E Chain E, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|2DCN|F Chain F, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|2DCN|G Chain G, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|2DCN|H Chain H, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|2DCN|I Chain I, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|2DCN|J Chain J, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|2DCN|K Chain K, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|2DCN|L Chain L, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|1WYE|A Chain A, Crystal Structure Of 2-keto-3-deoxygluconate Kinase (form
1) From Sulfolobus Tokodaii
pdb|1WYE|B Chain B, Crystal Structure Of 2-keto-3-deoxygluconate Kinase (form
1) From Sulfolobus Tokodaii
pdb|1WYE|C Chain C, Crystal Structure Of 2-keto-3-deoxygluconate Kinase (form
1) From Sulfolobus Tokodaii
pdb|1WYE|D Chain D, Crystal Structure Of 2-keto-3-deoxygluconate Kinase (form
1) From Sulfolobus Tokodaii
pdb|1WYE|E Chain E, Crystal Structure Of 2-keto-3-deoxygluconate Kinase (form
1) From Sulfolobus Tokodaii
pdb|1WYE|F Chain F, Crystal Structure Of 2-keto-3-deoxygluconate Kinase (form
1) From Sulfolobus Tokodaii
Length = 311
Score = 28.9 bits (63), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 36/82 (43%), Gaps = 5/82 (6%)
Query: 204 KASGTHKRITVITQGADPVVVAEDGKVKLFPVILLPKEKLVDTNGAGDAFVGGFLSQLVQ 263
KA + I V+ G +V DGK +P E D GAGDA G FLS +
Sbjct: 212 KAFSDYAEIIVMKLGPKGAIVYYDGKKYYSSGYQVPVE---DVTGAGDALGGTFLSLYYK 268
Query: 264 EKPVEDCVRTGCYAA--NVVIQ 283
+E + A+ NV+I+
Sbjct: 269 GFEMEKALDYAIVASTLNVMIR 290
>pdb|3OCA|A Chain A, Crystal Structure Of Peptide Deformylase From Ehrlichia
Chaffeensis
pdb|3OCA|B Chain B, Crystal Structure Of Peptide Deformylase From Ehrlichia
Chaffeensis
Length = 209
Score = 28.5 bits (62), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 49/116 (42%), Gaps = 16/116 (13%)
Query: 73 GTCAVCVVGGERSLVANLSAANCYKSEHLKRPEIWSIVEKAKYYYI-AGFFLTVSPESIQ 131
G AV V +R LV N+ E +I ++ +K + Y + G + ++P+ +
Sbjct: 67 GLAAVQVGVHKRILVMNVP------EEFEDSEDIENVEDKIEGYELYGGPYCIINPKIVD 120
Query: 132 MVAEHAAAKNKVFMMNLSAPFICEFFREPQEKALPYMDYVFGNETEARTFAKVHGW 187
+ E K LS P ++ PQ A+ Y+DY GNE K GW
Sbjct: 121 ISQEKVKLKEGC----LSVPGYFDYIVRPQRIAVQYLDY-NGNE----CIIKAQGW 167
>pdb|3U04|A Chain A, Crystal Structure Of Peptide Deformylase From Ehrlichia
Chaffeensis In Complex With Actinonin
Length = 190
Score = 28.5 bits (62), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 49/116 (42%), Gaps = 16/116 (13%)
Query: 73 GTCAVCVVGGERSLVANLSAANCYKSEHLKRPEIWSIVEKAKYYYI-AGFFLTVSPESIQ 131
G AV V +R LV N+ E +I ++ +K + Y + G + ++P+ +
Sbjct: 48 GLAAVQVGVHKRILVMNVP------EEFEDSEDIENVEDKIEGYELYGGPYCIINPKIVD 101
Query: 132 MVAEHAAAKNKVFMMNLSAPFICEFFREPQEKALPYMDYVFGNETEARTFAKVHGW 187
+ E K LS P ++ PQ A+ Y+DY GNE K GW
Sbjct: 102 ISQEKVKLKEGC----LSVPGYFDYIVRPQRIAVQYLDY-NGNE----CIIKAQGW 148
>pdb|2WBF|X Chain X, Crystal Structure Analysis Of Sera5e From Plasmodium
Falciparum With Loop 690-700 Ordered
Length = 265
Score = 28.5 bits (62), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 78 CVVGGERSLVANLSAANCYKSEHLKR 103
C+ G E + ++ L ANCYK EH R
Sbjct: 48 CMKGYEPTKISALYVANCYKGEHKDR 73
>pdb|3CH2|X Chain X, Crystal Structure Analysis Of Sera5e From Plasmodium
Falciparum
pdb|3CH3|X Chain X, Crystal Structure Analysis Of Sera5e From Plasmodium
Falciparum
Length = 265
Score = 28.5 bits (62), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 78 CVVGGERSLVANLSAANCYKSEHLKR 103
C+ G E + ++ L ANCYK EH R
Sbjct: 47 CMKGYEPTKISALYVANCYKGEHKDR 72
>pdb|2I3F|A Chain A, Crystal Structure Of A Glycolipid Transfer-Like Protein
From Galdieria Sulphuraria
pdb|2I3F|B Chain B, Crystal Structure Of A Glycolipid Transfer-Like Protein
From Galdieria Sulphuraria
pdb|2Q52|A Chain A, Ensemble Refinement Of The Crystal Structure Of A
Glycolipid Transfer- Like Protein From Galdieria
Sulphuraria
pdb|2Q52|B Chain B, Ensemble Refinement Of The Crystal Structure Of A
Glycolipid Transfer- Like Protein From Galdieria
Sulphuraria
Length = 224
Score = 27.7 bits (60), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Query: 202 WPKASGTHKRITVITQGADPVVVAEDGKVKLFPVILLPKE--KLVDTNGAG 250
W K + + +I V V EDGKV L P + KE ++VD G+G
Sbjct: 2 WNKKNEEKEDFGIIVILWKQVTVKEDGKVPLEPFLTAAKEVLRVVDAFGSG 52
>pdb|4GM6|A Chain A, Crystal Structure Of Pfkb Family Carbohydrate
Kinase(Target Efi-502146 From Listeria Grayi Dsm 20601
pdb|4GM6|B Chain B, Crystal Structure Of Pfkb Family Carbohydrate
Kinase(Target Efi-502146 From Listeria Grayi Dsm 20601
pdb|4GM6|C Chain C, Crystal Structure Of Pfkb Family Carbohydrate
Kinase(Target Efi-502146 From Listeria Grayi Dsm 20601
pdb|4GM6|D Chain D, Crystal Structure Of Pfkb Family Carbohydrate
Kinase(Target Efi-502146 From Listeria Grayi Dsm 20601
pdb|4GM6|E Chain E, Crystal Structure Of Pfkb Family Carbohydrate
Kinase(Target Efi-502146 From Listeria Grayi Dsm 20601
pdb|4GM6|F Chain F, Crystal Structure Of Pfkb Family Carbohydrate
Kinase(Target Efi-502146 From Listeria Grayi Dsm 20601
Length = 351
Score = 27.7 bits (60), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 38/188 (20%), Positives = 78/188 (41%), Gaps = 28/188 (14%)
Query: 109 IVEKAKYYYIAGFFLTVSPESIQMVAE--HAAAKNKV---FMMNLSAPFI-CEFFREPQE 162
+++ + +++G + +S ++MV + A +N + F MN A E + +
Sbjct: 147 LLKGIRVLHVSGITIALSTFWLEMVVKIIREAKRNGIKISFDMNYRAKLWELEAAKRAYQ 206
Query: 163 KALPYMDYVFGNETEARTFAKVHGWETDNVEEIALKI--------SQWPKASGTHKRIT- 213
+ LP +DY + +A F ++ TD + + K ++ S +H +
Sbjct: 207 QLLPLVDYCSAGQMDAVAFFEISSETTDYYQAMHDKYPNIELFYATKRTVISASHHLLQG 266
Query: 214 -VITQGADPVVVAEDGKVKLFPVILLPKEKLVDTNGAGDAFVGGFLSQLVQEKPVEDCVR 272
+ TQG E + ++P+ VD G GDA+ L ++ E ++ V+
Sbjct: 267 HLWTQGE----CWESEEYAIYPI--------VDRVGGGDAYTAAVLHGILSEWRPDETVK 314
Query: 273 TGCYAANV 280
AA +
Sbjct: 315 FATAAAGL 322
>pdb|2HF9|A Chain A, Crystal Structure Of Hypb From Methanocaldococcus
Jannaschii In The Triphosphate Form
pdb|2HF9|B Chain B, Crystal Structure Of Hypb From Methanocaldococcus
Jannaschii In The Triphosphate Form
Length = 226
Score = 27.3 bits (59), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 32/74 (43%), Gaps = 9/74 (12%)
Query: 185 HGWETDNVEEIALK--------ISQWPKASGTHKRITVI-TQGADPVVVAEDGKVKLFPV 235
H E N++EI L I GTHKRI VI T D + G +K +
Sbjct: 109 HALEDLNLDEIDLLFIENVGNLICPADFDLGTHKRIVVISTTEGDDTIEKHPGIMKTADL 168
Query: 236 ILLPKEKLVDTNGA 249
I++ K L D GA
Sbjct: 169 IVINKIDLADAVGA 182
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,191,379
Number of Sequences: 62578
Number of extensions: 372387
Number of successful extensions: 1245
Number of sequences better than 100.0: 57
Number of HSP's better than 100.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 1162
Number of HSP's gapped (non-prelim): 63
length of query: 296
length of database: 14,973,337
effective HSP length: 98
effective length of query: 198
effective length of database: 8,840,693
effective search space: 1750457214
effective search space used: 1750457214
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)