Query 022475
Match_columns 296
No_of_seqs 132 out of 1212
Neff 9.9
Searched_HMMs 46136
Date Fri Mar 29 03:48:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022475.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022475hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00247 adenosine kinase; Pro 100.0 7.5E-48 1.6E-52 339.3 31.5 293 3-295 49-342 (345)
2 PLN02548 adenosine kinase 100.0 8.3E-47 1.8E-51 331.3 31.0 294 3-296 39-332 (332)
3 KOG2854 Possible pfkB family c 100.0 6.9E-46 1.5E-50 306.0 26.9 296 1-296 48-343 (343)
4 cd01168 adenosine_kinase Adeno 100.0 2E-44 4.4E-49 313.7 26.9 263 10-290 49-312 (312)
5 PLN02813 pfkB-type carbohydrat 100.0 5.8E-43 1.3E-47 313.4 26.5 264 7-289 117-393 (426)
6 PRK15074 inosine/guanosine kin 100.0 2.1E-42 4.6E-47 307.8 27.7 271 2-290 77-417 (434)
7 PLN02379 pfkB-type carbohydrat 100.0 2.6E-42 5.5E-47 304.6 27.8 262 10-290 80-344 (367)
8 PRK11142 ribokinase; Provision 100.0 3.8E-43 8.2E-48 305.0 21.4 265 7-294 30-298 (306)
9 cd01174 ribokinase Ribokinase 100.0 1.7E-42 3.7E-47 298.9 25.2 260 6-288 26-287 (292)
10 PTZ00292 ribokinase; Provision 100.0 2.3E-42 5.1E-47 302.4 22.1 272 6-295 42-320 (326)
11 PLN02967 kinase 100.0 1.2E-41 2.7E-46 309.1 26.1 277 6-295 233-541 (581)
12 TIGR02152 D_ribokin_bact ribok 100.0 2.7E-41 5.9E-46 291.6 25.4 270 4-295 19-292 (293)
13 cd01166 KdgK 2-keto-3-deoxyglu 100.0 1.8E-40 3.9E-45 286.6 25.8 262 7-287 22-293 (294)
14 TIGR03828 pfkB 1-phosphofructo 100.0 1E-40 2.2E-45 289.5 23.4 270 3-295 22-295 (304)
15 cd01944 YegV_kinase_like YegV- 100.0 2.1E-40 4.7E-45 285.4 25.1 259 6-286 26-289 (289)
16 PLN02341 pfkB-type carbohydrat 100.0 2.7E-40 5.9E-45 300.2 26.9 269 11-295 115-403 (470)
17 COG0524 RbsK Sugar kinases, ri 100.0 2.2E-40 4.7E-45 288.3 24.9 264 11-294 32-302 (311)
18 PLN02323 probable fructokinase 100.0 3.5E-40 7.7E-45 289.1 25.4 266 10-295 37-321 (330)
19 cd01172 RfaE_like RfaE encodes 100.0 1.6E-40 3.4E-45 288.3 22.5 262 10-292 34-299 (304)
20 PLN02543 pfkB-type carbohydrat 100.0 4E-40 8.7E-45 296.7 24.5 273 8-295 164-483 (496)
21 cd01167 bac_FRK Fructokinases 100.0 6.7E-40 1.5E-44 283.2 25.0 257 10-287 22-294 (295)
22 cd01945 ribokinase_group_B Rib 100.0 5.3E-40 1.1E-44 282.3 24.1 250 8-288 28-279 (284)
23 PRK09434 aminoimidazole ribosi 100.0 1.5E-39 3.2E-44 282.1 26.7 264 10-295 22-303 (304)
24 PF00294 PfkB: pfkB family car 100.0 1.1E-40 2.4E-45 288.8 19.0 267 7-290 27-297 (301)
25 PRK09850 pseudouridine kinase; 100.0 3.7E-40 7.9E-45 286.8 22.3 262 9-293 33-300 (313)
26 cd01943 MAK32 MAK32 kinase. M 100.0 4.4E-40 9.6E-45 287.1 21.6 276 3-287 11-304 (328)
27 cd01940 Fructoselysine_kinase_ 100.0 1.5E-39 3.3E-44 276.6 24.4 245 11-287 17-263 (264)
28 PRK09954 putative kinase; Prov 100.0 1.7E-39 3.8E-44 287.8 23.9 261 9-292 86-350 (362)
29 TIGR03168 1-PFK hexose kinase, 100.0 2.1E-39 4.5E-44 281.1 23.1 270 3-295 22-295 (303)
30 TIGR02198 rfaE_dom_I rfaE bifu 100.0 2.1E-39 4.5E-44 282.6 23.0 263 11-295 43-310 (315)
31 PRK13508 tagatose-6-phosphate 100.0 2.2E-39 4.7E-44 281.6 22.9 263 7-291 27-293 (309)
32 cd01942 ribokinase_group_A Rib 100.0 6E-39 1.3E-43 275.1 25.3 251 6-287 26-278 (279)
33 COG1105 FruK Fructose-1-phosph 100.0 3.5E-39 7.6E-44 269.9 22.9 267 3-293 23-295 (310)
34 TIGR01231 lacC tagatose-6-phos 100.0 4.1E-39 9E-44 279.8 23.6 266 6-291 25-293 (309)
35 PRK09513 fruK 1-phosphofructok 100.0 6.6E-39 1.4E-43 278.9 23.9 269 4-295 27-299 (312)
36 PRK10294 6-phosphofructokinase 100.0 5.1E-39 1.1E-43 279.3 23.0 269 4-293 26-298 (309)
37 cd01939 Ketohexokinase Ketohex 100.0 2.5E-38 5.4E-43 272.6 24.5 250 9-287 29-289 (290)
38 cd01164 FruK_PfkB_like 1-phosp 100.0 2.9E-38 6.2E-43 272.2 24.1 261 3-287 23-288 (289)
39 cd01947 Guanosine_kinase_like 100.0 8.9E-38 1.9E-42 265.8 24.5 238 6-287 26-264 (265)
40 cd01941 YeiC_kinase_like YeiC- 100.0 8.6E-38 1.9E-42 269.1 23.7 255 10-284 29-288 (288)
41 PRK09813 fructoselysine 6-kina 100.0 7.2E-38 1.6E-42 265.5 22.0 240 12-287 19-259 (260)
42 KOG2855 Ribokinase [Carbohydra 100.0 8.9E-38 1.9E-42 261.3 20.3 270 5-295 35-320 (330)
43 PRK11316 bifunctional heptose 100.0 2.4E-35 5.2E-40 270.2 22.5 262 9-294 44-307 (473)
44 cd01946 ribokinase_group_C Rib 100.0 7.5E-35 1.6E-39 249.4 23.6 247 11-287 20-275 (277)
45 cd01937 ribokinase_group_D Rib 100.0 7.1E-34 1.5E-38 240.4 22.5 241 3-283 11-254 (254)
46 PLN02630 pfkB-type carbohydrat 100.0 5E-33 1.1E-37 241.7 21.2 233 11-287 32-277 (335)
47 COG2870 RfaE ADP-heptose synth 100.0 1.7E-30 3.7E-35 219.5 17.8 258 7-289 42-301 (467)
48 KOG2947 Carbohydrate kinase [C 100.0 9.4E-30 2E-34 200.8 17.5 257 9-287 34-298 (308)
49 cd00287 ribokinase_pfkB_like r 99.9 2.9E-25 6.2E-30 180.3 16.4 172 4-262 24-196 (196)
50 cd01173 pyridoxal_pyridoxamine 99.8 9.5E-20 2E-24 154.0 13.7 164 111-284 71-251 (254)
51 PRK12412 pyridoxal kinase; Rev 99.8 4.6E-19 1E-23 150.6 16.3 160 113-284 73-246 (268)
52 TIGR00097 HMP-P_kinase phospho 99.8 7.7E-19 1.7E-23 148.2 16.0 161 112-284 67-240 (254)
53 TIGR00687 pyridox_kin pyridoxa 99.8 7.4E-19 1.6E-23 150.9 13.7 163 110-282 72-254 (286)
54 PRK05756 pyridoxamine kinase; 99.8 1.1E-18 2.4E-23 149.8 14.1 165 110-284 72-255 (286)
55 PRK12413 phosphomethylpyrimidi 99.8 1.7E-18 3.6E-23 146.2 14.9 163 111-285 67-243 (253)
56 PRK06427 bifunctional hydroxy- 99.8 3.2E-18 7E-23 145.6 15.5 162 112-285 73-249 (266)
57 cd01169 HMPP_kinase 4-amino-5- 99.8 5.1E-18 1.1E-22 142.4 15.9 161 112-284 68-241 (242)
58 PRK08573 phosphomethylpyrimidi 99.8 8.6E-18 1.9E-22 152.3 18.1 151 126-284 82-244 (448)
59 PRK07105 pyridoxamine kinase; 99.8 6.1E-18 1.3E-22 145.1 13.7 163 112-287 75-258 (284)
60 PRK08176 pdxK pyridoxal-pyrido 99.8 9.2E-18 2E-22 143.5 14.4 161 111-284 87-266 (281)
61 PRK12616 pyridoxal kinase; Rev 99.8 2.2E-17 4.7E-22 140.4 14.8 161 112-284 74-249 (270)
62 PTZ00344 pyridoxal kinase; Pro 99.6 1.3E-14 2.9E-19 125.0 17.2 158 114-284 78-258 (296)
63 PTZ00347 phosphomethylpyrimidi 99.6 8.5E-15 1.8E-19 135.1 15.3 162 110-284 295-478 (504)
64 PLN02898 HMP-P kinase/thiamin- 99.6 1.2E-14 2.7E-19 133.9 15.3 162 112-285 78-254 (502)
65 cd01171 YXKO-related B.subtili 99.6 2.7E-14 5.7E-19 120.7 13.9 162 108-285 73-236 (254)
66 COG0351 ThiD Hydroxymethylpyri 99.6 3.9E-14 8.4E-19 116.6 13.8 149 126-283 83-244 (263)
67 PF08543 Phos_pyr_kin: Phospho 99.6 4.3E-14 9.3E-19 118.5 12.5 160 112-283 60-233 (246)
68 cd01170 THZ_kinase 4-methyl-5- 99.5 2.5E-13 5.3E-18 113.4 14.5 167 106-283 43-221 (242)
69 PRK09517 multifunctional thiam 99.5 1.2E-13 2.6E-18 132.6 13.2 160 113-284 311-484 (755)
70 PRK14713 multifunctional hydro 99.5 2E-13 4.3E-18 126.6 14.0 158 113-282 99-270 (530)
71 TIGR00196 yjeF_cterm yjeF C-te 99.5 1.8E-12 3.9E-17 110.5 16.1 215 42-285 31-251 (272)
72 KOG3009 Predicted carbohydrate 99.5 6.9E-13 1.5E-17 114.7 11.8 218 7-283 368-599 (614)
73 PLN02978 pyridoxal kinase 99.5 1.6E-12 3.4E-17 112.5 14.0 147 128-284 102-267 (308)
74 PTZ00493 phosphomethylpyrimidi 99.3 1.2E-10 2.7E-15 99.9 14.4 161 113-284 74-285 (321)
75 COG2240 PdxK Pyridoxal/pyridox 99.3 1E-10 2.3E-15 97.0 12.4 163 109-283 70-249 (281)
76 PRK09355 hydroxyethylthiazole 99.2 7.5E-10 1.6E-14 93.7 15.1 164 106-282 48-224 (263)
77 TIGR00694 thiM hydroxyethylthi 99.1 4.4E-09 9.4E-14 88.3 13.6 164 106-282 43-219 (249)
78 KOG2598 Phosphomethylpyrimidin 98.7 1.7E-07 3.6E-12 81.3 11.9 150 126-284 103-283 (523)
79 KOG2599 Pyridoxal/pyridoxine/p 98.6 4E-07 8.7E-12 74.4 10.4 157 110-277 79-256 (308)
80 PRK03979 ADP-specific phosphof 98.4 6.4E-05 1.4E-09 67.6 19.3 75 111-185 221-308 (463)
81 PRK14039 ADP-dependent glucoki 98.3 0.00013 2.8E-09 65.4 17.9 75 112-186 210-297 (453)
82 TIGR02045 P_fruct_ADP ADP-spec 98.2 0.00026 5.6E-09 63.4 19.4 75 111-185 208-294 (446)
83 PF02110 HK: Hydroxyethylthiaz 98.1 0.00023 5E-09 59.0 14.4 162 106-280 43-217 (246)
84 PF01256 Carb_kinase: Carbohyd 98.0 0.00014 3.1E-09 60.6 12.2 159 108-283 63-221 (242)
85 PF04587 ADP_PFK_GK: ADP-speci 98.0 0.00019 4.1E-09 65.2 13.2 75 111-185 208-294 (444)
86 PRK10565 putative carbohydrate 97.9 0.00032 6.8E-09 65.0 14.6 155 108-281 316-472 (508)
87 PRK14038 ADP-dependent glucoki 97.9 0.0016 3.6E-08 58.4 18.2 77 108-185 220-302 (453)
88 COG2145 ThiM Hydroxyethylthiaz 97.9 0.0012 2.6E-08 54.4 15.0 159 108-277 51-221 (265)
89 KOG3974 Predicted sugar kinase 97.8 0.0012 2.6E-08 54.2 14.1 166 108-287 97-270 (306)
90 cd01938 ADPGK_ADPPFK ADP-depen 97.0 0.011 2.4E-07 53.5 11.2 73 113-185 206-288 (445)
91 COG0063 Predicted sugar kinase 95.7 0.33 7.2E-06 41.5 12.7 149 110-275 99-251 (284)
92 KOG4184 Predicted sugar kinase 92.8 1 2.2E-05 39.2 8.9 173 2-184 129-318 (478)
93 COG4809 Archaeal ADP-dependent 92.2 8.1 0.00018 34.3 14.0 79 108-186 221-311 (466)
94 PRK10076 pyruvate formate lyas 88.3 2.7 5.9E-05 34.4 7.5 68 112-183 38-110 (213)
95 COG1618 Predicted nucleotide k 80.8 15 0.00033 28.6 7.9 123 46-172 20-157 (179)
96 KOG0053 Cystathionine beta-lya 79.6 29 0.00062 31.4 10.4 41 108-148 157-199 (409)
97 COG0626 MetC Cystathionine bet 76.1 35 0.00075 30.9 10.1 109 5-148 75-186 (396)
98 COG1180 PflA Pyruvate-formate 75.2 29 0.00062 29.4 9.0 81 112-199 83-168 (260)
99 COG1922 WecG Teichoic acid bio 74.6 11 0.00023 31.7 6.0 101 104-219 56-171 (253)
100 TIGR01768 GGGP-family geranylg 73.7 12 0.00027 30.7 6.2 50 112-172 27-76 (223)
101 PF01118 Semialdhyde_dh: Semia 73.1 22 0.00048 25.9 7.0 39 108-152 62-100 (121)
102 TIGR00696 wecB_tagA_cpsF bacte 72.3 12 0.00026 29.7 5.6 44 128-171 35-78 (177)
103 KOG1114 Tripeptidyl peptidase 70.8 7.1 0.00015 38.7 4.7 53 198-258 71-127 (1304)
104 PRK06901 aspartate-semialdehyd 70.7 33 0.00072 29.9 8.3 88 35-148 5-95 (322)
105 PF03808 Glyco_tran_WecB: Glyc 70.0 15 0.00032 28.9 5.8 44 128-171 35-78 (172)
106 COG2873 MET17 O-acetylhomoseri 68.6 44 0.00096 29.8 8.6 106 29-174 97-205 (426)
107 PRK04169 geranylgeranylglycery 68.3 19 0.00042 29.9 6.2 51 111-172 31-81 (232)
108 PRK06702 O-acetylhomoserine am 67.3 48 0.001 30.4 9.2 37 112-148 147-184 (432)
109 COG0036 Rpe Pentose-5-phosphat 66.5 15 0.00032 30.1 5.1 52 111-172 83-136 (220)
110 COG4607 CeuA ABC-type enteroch 66.0 31 0.00068 29.7 7.0 60 111-182 117-176 (320)
111 PRK05967 cystathionine beta-ly 65.4 89 0.0019 28.3 10.4 37 112-148 149-186 (395)
112 COG0345 ProC Pyrroline-5-carbo 65.0 65 0.0014 27.4 8.8 184 39-277 4-204 (266)
113 COG0136 Asd Aspartate-semialde 64.3 1E+02 0.0022 27.2 12.1 95 34-149 2-98 (334)
114 PF01053 Cys_Met_Meta_PP: Cys/ 64.3 30 0.00066 31.1 7.2 109 5-148 67-178 (386)
115 PF10087 DUF2325: Uncharacteri 63.4 19 0.00042 25.1 4.7 78 41-148 4-82 (97)
116 cd06533 Glyco_transf_WecG_TagA 63.3 31 0.00067 27.1 6.3 44 128-171 33-76 (171)
117 PRK09028 cystathionine beta-ly 62.8 70 0.0015 28.9 9.3 38 111-148 145-183 (394)
118 TIGR00334 5S_RNA_mat_M5 ribonu 62.7 27 0.00059 27.5 5.7 85 112-200 22-106 (174)
119 PRK06728 aspartate-semialdehyd 62.2 1.1E+02 0.0024 27.2 10.1 94 34-152 6-102 (347)
120 PHA00438 hypothetical protein 62.0 6.1 0.00013 26.2 1.7 17 246-262 46-62 (81)
121 PRK06598 aspartate-semialdehyd 62.0 1E+02 0.0022 27.6 9.9 38 110-152 63-101 (369)
122 PF09314 DUF1972: Domain of un 61.6 56 0.0012 26.1 7.5 68 112-182 92-168 (185)
123 TIGR01745 asd_gamma aspartate- 59.0 1E+02 0.0022 27.6 9.3 38 110-152 62-100 (366)
124 PRK07050 cystathionine beta-ly 58.1 1.4E+02 0.0029 27.0 10.3 38 112-149 150-188 (394)
125 PRK08133 O-succinylhomoserine 57.3 1.1E+02 0.0025 27.4 9.7 37 112-148 146-183 (390)
126 PF10911 DUF2717: Protein of u 57.1 8.1 0.00018 25.6 1.7 18 245-262 45-62 (77)
127 COG0373 HemA Glutamyl-tRNA red 57.0 78 0.0017 28.8 8.4 118 40-182 182-301 (414)
128 KOG0174 20S proteasome, regula 56.3 7.9 0.00017 30.7 1.8 42 247-288 147-189 (224)
129 PRK08745 ribulose-phosphate 3- 53.3 31 0.00066 28.5 4.9 52 111-172 84-137 (223)
130 COG1159 Era GTPase [General fu 52.8 1.2E+02 0.0025 26.3 8.3 141 33-175 3-154 (298)
131 TIGR02494 PFLE_PFLC glycyl-rad 52.6 77 0.0017 27.1 7.6 55 114-172 127-181 (295)
132 PRK09722 allulose-6-phosphate 52.0 37 0.00079 28.2 5.2 52 112-172 82-135 (229)
133 COG1646 Predicted phosphate-bi 51.8 45 0.00097 27.6 5.5 51 111-172 40-91 (240)
134 PRK06928 pyrroline-5-carboxyla 51.7 1.2E+02 0.0026 25.8 8.6 35 243-277 168-208 (277)
135 PRK05968 hypothetical protein; 51.5 1.8E+02 0.004 26.1 11.9 39 110-148 145-184 (389)
136 PF01113 DapB_N: Dihydrodipico 51.4 80 0.0017 23.1 6.5 60 108-174 63-123 (124)
137 PRK05939 hypothetical protein; 51.4 1.7E+02 0.0037 26.4 9.8 38 112-149 131-169 (397)
138 PRK12491 pyrroline-5-carboxyla 51.0 1.4E+02 0.003 25.4 8.8 36 243-278 168-208 (272)
139 PF10649 DUF2478: Protein of u 50.1 1.1E+02 0.0024 23.7 7.2 102 49-150 17-132 (159)
140 PRK08005 epimerase; Validated 50.0 37 0.0008 27.7 4.8 51 112-172 81-133 (210)
141 PF00834 Ribul_P_3_epim: Ribul 50.0 34 0.00074 27.7 4.6 51 112-172 80-132 (201)
142 PRK08883 ribulose-phosphate 3- 49.3 38 0.00083 27.8 4.9 52 111-172 80-133 (220)
143 TIGR02826 RNR_activ_nrdG3 anae 48.6 84 0.0018 24.0 6.4 57 114-177 63-119 (147)
144 PLN02383 aspartate semialdehyd 47.9 2E+02 0.0043 25.5 11.0 94 34-152 8-103 (344)
145 TIGR01769 GGGP geranylgeranylg 47.7 59 0.0013 26.5 5.6 49 113-172 25-74 (205)
146 PRK08114 cystathionine beta-ly 47.5 1.3E+02 0.0028 27.2 8.4 54 7-65 76-132 (395)
147 PRK08091 ribulose-phosphate 3- 47.2 50 0.0011 27.4 5.2 51 112-172 91-145 (228)
148 TIGR00112 proC pyrroline-5-car 45.9 1.8E+02 0.0038 24.3 8.7 36 243-278 148-188 (245)
149 PRK07810 O-succinylhomoserine 45.1 2.4E+02 0.0051 25.6 9.8 38 112-149 155-193 (403)
150 KOG0256 1-aminocyclopropane-1- 44.7 92 0.002 28.2 6.7 23 125-147 243-265 (471)
151 COG2876 AroA 3-deoxy-D-arabino 44.7 20 0.00043 30.2 2.5 87 128-229 96-197 (286)
152 PRK03692 putative UDP-N-acetyl 44.2 80 0.0017 26.4 6.1 67 104-171 53-134 (243)
153 COG4588 AcfC Accessory coloniz 44.0 1.8E+02 0.0038 23.8 9.2 66 110-184 18-85 (252)
154 COG1058 CinA Predicted nucleot 43.7 56 0.0012 27.6 5.0 36 20-57 21-56 (255)
155 PF04230 PS_pyruv_trans: Polys 43.7 1.2E+02 0.0027 24.8 7.4 52 131-182 89-142 (286)
156 PRK05613 O-acetylhomoserine am 43.3 1.9E+02 0.0041 26.6 8.9 37 113-149 156-193 (437)
157 TIGR02493 PFLA pyruvate format 42.8 1.3E+02 0.0028 24.7 7.2 59 114-174 67-125 (235)
158 cd00614 CGS_like CGS_like: Cys 42.7 2E+02 0.0044 25.5 9.0 38 112-149 125-163 (369)
159 TIGR01296 asd_B aspartate-semi 42.6 2.4E+02 0.0052 24.9 10.9 37 110-152 59-95 (339)
160 TIGR01325 O_suc_HS_sulf O-succ 42.2 2.5E+02 0.0055 25.1 9.7 38 112-149 139-177 (380)
161 PF04016 DUF364: Domain of unk 41.9 46 0.001 25.4 4.0 44 107-152 57-100 (147)
162 PRK04296 thymidine kinase; Pro 41.8 72 0.0016 25.4 5.4 60 112-172 78-137 (190)
163 TIGR01328 met_gam_lyase methio 41.6 2.3E+02 0.005 25.5 9.1 38 112-149 144-182 (391)
164 PF07505 Gp37_Gp68: Phage prot 40.2 69 0.0015 27.2 5.1 41 109-149 185-229 (261)
165 KOG0257 Kynurenine aminotransf 40.2 2.9E+02 0.0063 25.1 9.5 40 109-148 169-212 (420)
166 PRK07582 cystathionine gamma-l 39.8 2.7E+02 0.0059 24.7 9.5 55 10-66 67-121 (366)
167 PF13986 DUF4224: Domain of un 39.7 47 0.001 19.8 3.0 32 172-214 2-33 (47)
168 PRK08248 O-acetylhomoserine am 38.9 2.8E+02 0.0061 25.4 9.3 38 112-149 149-187 (431)
169 PF01884 PcrB: PcrB family; I 38.8 77 0.0017 26.3 5.1 50 111-172 31-80 (230)
170 cd00757 ThiF_MoeB_HesA_family 38.4 93 0.002 25.6 5.7 30 34-66 22-51 (228)
171 PRK08134 O-acetylhomoserine am 38.3 2.7E+02 0.0058 25.6 9.1 39 111-149 148-187 (433)
172 PRK09330 cell division protein 38.2 3E+02 0.0066 24.8 10.4 66 106-172 91-164 (384)
173 PRK07812 O-acetylhomoserine am 37.9 2.1E+02 0.0046 26.3 8.4 38 112-149 155-193 (436)
174 cd04919 ACT_AK-Hom3_2 ACT doma 37.2 1E+02 0.0022 19.1 5.9 31 37-67 2-37 (66)
175 TIGR00065 ftsZ cell division p 36.9 2.2E+02 0.0048 25.3 8.0 67 106-173 95-169 (349)
176 PF00070 Pyr_redox: Pyridine n 36.6 1.2E+02 0.0025 19.9 5.0 36 29-64 18-59 (80)
177 COG0547 TrpD Anthranilate phos 36.3 3.1E+02 0.0067 24.3 13.1 145 109-283 143-303 (338)
178 COG0206 FtsZ Cell division GTP 36.0 2.7E+02 0.0059 24.6 8.3 72 105-177 88-169 (338)
179 PF02659 DUF204: Domain of unk 36.0 80 0.0017 20.2 3.9 26 251-277 4-29 (67)
180 TIGR02990 ectoine_eutA ectoine 35.6 2.2E+02 0.0048 23.7 7.4 31 34-65 121-151 (239)
181 PF02571 CbiJ: Precorrin-6x re 35.4 46 0.001 27.9 3.4 28 190-223 116-143 (249)
182 PF12687 DUF3801: Protein of u 35.0 1.4E+02 0.0031 24.2 6.0 51 28-80 26-76 (204)
183 PRK05671 aspartate-semialdehyd 34.3 3.3E+02 0.0071 24.1 10.8 37 110-152 64-100 (336)
184 PRK08247 cystathionine gamma-s 34.0 3.4E+02 0.0073 24.1 10.5 37 112-148 136-173 (366)
185 PLN02520 bifunctional 3-dehydr 33.8 2.2E+02 0.0047 27.0 7.9 92 113-223 111-206 (529)
186 KOG3040 Predicted sugar phosph 33.7 1.3E+02 0.0028 24.7 5.4 43 22-65 28-70 (262)
187 PF01212 Beta_elim_lyase: Beta 33.4 1.4E+02 0.0029 25.8 6.0 76 95-173 105-191 (290)
188 TIGR02356 adenyl_thiF thiazole 33.2 89 0.0019 25.2 4.7 27 34-63 22-48 (202)
189 PRK13018 cell division protein 33.1 3.7E+02 0.008 24.3 10.4 68 106-173 106-180 (378)
190 COG0075 Serine-pyruvate aminot 32.7 3.8E+02 0.0082 24.3 9.0 91 29-149 76-169 (383)
191 PRK07324 transaminase; Validat 32.5 3.6E+02 0.0077 23.9 9.7 37 112-148 153-193 (373)
192 TIGR01326 OAH_OAS_sulfhy OAH/O 32.4 3.8E+02 0.0083 24.3 9.1 38 112-149 142-180 (418)
193 PRK08249 cystathionine gamma-s 32.3 2.9E+02 0.0062 25.0 8.2 38 112-149 149-187 (398)
194 COG2085 Predicted dinucleotide 32.1 1.2E+02 0.0025 24.9 5.0 71 108-183 56-141 (211)
195 TIGR01329 cysta_beta_ly_E cyst 32.0 3.7E+02 0.0081 24.0 9.0 38 112-149 131-169 (378)
196 PRK07811 cystathionine gamma-s 31.9 2.6E+02 0.0057 25.1 7.9 37 112-148 146-183 (388)
197 KOG3361 Iron binding protein i 31.8 49 0.0011 24.6 2.5 34 245-278 85-119 (157)
198 PLN02242 methionine gamma-lyas 31.5 4E+02 0.0088 24.2 9.2 36 113-148 164-200 (418)
199 cd04857 Peptidases_S8_Tripepti 31.3 64 0.0014 29.4 3.8 52 195-254 10-65 (412)
200 cd03822 GT1_ecORF704_like This 31.3 1.9E+02 0.0041 24.7 6.9 73 111-183 75-151 (366)
201 cd04924 ACT_AK-Arch_2 ACT doma 31.0 1.3E+02 0.0029 18.4 5.9 31 36-66 1-36 (66)
202 TIGR03128 RuMP_HxlA 3-hexulose 30.9 2.1E+02 0.0046 22.8 6.6 58 111-174 75-133 (206)
203 PRK13600 putative ribosomal pr 30.3 1.5E+02 0.0033 20.2 4.7 37 111-150 28-64 (84)
204 PF11469 Ribonucleas_3_2: Ribo 29.9 56 0.0012 23.2 2.5 31 243-273 52-83 (120)
205 TIGR01324 cysta_beta_ly_B cyst 29.8 4.1E+02 0.0089 23.8 10.0 38 112-149 135-173 (377)
206 PRK03673 hypothetical protein; 29.7 1.4E+02 0.003 27.1 5.7 47 20-68 21-67 (396)
207 COG1660 Predicted P-loop-conta 29.7 1.7E+02 0.0037 24.9 5.6 40 109-152 20-64 (286)
208 PRK08040 putative semialdehyde 29.5 4E+02 0.0087 23.6 9.4 94 34-152 5-100 (336)
209 PRK14057 epimerase; Provisiona 29.4 1.2E+02 0.0027 25.5 4.9 51 112-172 98-159 (254)
210 cd02752 MopB_Formate-Dh-Na-lik 29.4 1.7E+02 0.0037 28.5 6.5 43 109-152 166-211 (649)
211 cd02201 FtsZ_type1 FtsZ is a G 29.3 2.9E+02 0.0062 23.9 7.4 67 106-172 78-151 (304)
212 PRK07503 methionine gamma-lyas 29.2 4E+02 0.0087 24.1 8.6 38 112-149 150-188 (403)
213 TIGR02491 NrdG anaerobic ribon 28.8 1.1E+02 0.0023 23.4 4.3 59 114-172 65-127 (154)
214 PF14252 DUF4347: Domain of un 28.7 2.3E+02 0.0051 22.1 6.1 62 144-225 3-64 (165)
215 cd02191 FtsZ FtsZ is a GTPase 28.5 3.5E+02 0.0077 23.4 7.8 67 106-173 78-152 (303)
216 PF10727 Rossmann-like: Rossma 28.4 2.5E+02 0.0054 20.8 6.8 91 39-152 13-107 (127)
217 PRK09522 bifunctional glutamin 26.7 5.6E+02 0.012 24.3 12.1 41 109-152 339-379 (531)
218 COG0481 LepA Membrane GTPase L 26.6 3.7E+02 0.0081 25.2 7.6 57 30-93 339-395 (603)
219 KOG1615 Phosphoserine phosphat 26.5 94 0.002 25.1 3.5 98 106-218 9-113 (227)
220 PRK11145 pflA pyruvate formate 26.4 1.9E+02 0.0041 23.9 5.7 59 114-174 72-130 (246)
221 COG1889 NOP1 Fibrillarin-like 26.4 2.3E+02 0.0049 23.2 5.6 42 124-172 107-150 (231)
222 COG0269 SgbH 3-hexulose-6-phos 26.4 3.7E+02 0.0079 22.1 8.6 37 111-150 79-115 (217)
223 PRK06444 prephenate dehydrogen 26.0 3.5E+02 0.0076 21.8 6.9 23 40-62 4-27 (197)
224 PRK07504 O-succinylhomoserine 25.8 4.5E+02 0.0096 23.7 8.3 39 111-149 149-188 (398)
225 PF11019 DUF2608: Protein of u 25.3 4.1E+02 0.0089 22.3 9.2 39 26-65 90-128 (252)
226 PRK06234 methionine gamma-lyas 25.2 5.1E+02 0.011 23.3 9.5 37 112-148 149-188 (400)
227 PF04413 Glycos_transf_N: 3-De 25.0 2.7E+02 0.0058 22.1 6.0 64 113-182 96-165 (186)
228 COG3845 ABC-type uncharacteriz 25.0 85 0.0018 29.1 3.4 194 8-230 7-218 (501)
229 cd04922 ACT_AKi-HSDH-ThrA_2 AC 24.6 1.8E+02 0.0038 17.9 5.8 30 37-66 2-36 (66)
230 COG2518 Pcm Protein-L-isoaspar 24.6 2.3E+02 0.0049 23.2 5.5 44 13-62 78-121 (209)
231 PF05906 DUF865: Herpesvirus-7 24.5 7.4 0.00016 20.5 -2.0 16 242-257 20-35 (35)
232 PRK12475 thiamine/molybdopteri 24.4 1.7E+02 0.0038 25.8 5.2 27 34-63 25-51 (338)
233 PF11167 DUF2953: Protein of u 24.4 56 0.0012 19.8 1.6 17 247-263 3-19 (53)
234 TIGR02495 NrdG2 anaerobic ribo 24.4 3.5E+02 0.0075 21.2 8.5 37 113-150 63-99 (191)
235 PRK00278 trpC indole-3-glycero 24.1 3.7E+02 0.0079 22.7 7.0 60 110-178 131-191 (260)
236 cd04904 ACT_AAAH ACT domain of 23.9 2E+02 0.0044 18.6 4.4 31 50-80 16-48 (74)
237 PRK13601 putative L7Ae-like ri 23.7 2.4E+02 0.0052 19.1 4.7 35 111-148 23-57 (82)
238 PLN02409 serine--glyoxylate am 23.5 5.4E+02 0.012 23.1 9.1 50 13-66 65-114 (401)
239 KOG0024 Sorbitol dehydrogenase 23.3 4.7E+02 0.01 23.1 7.3 26 192-224 256-281 (354)
240 COG2321 Predicted metalloprote 23.1 1.3E+02 0.0028 25.6 3.9 38 250-287 212-254 (295)
241 COG1058 CinA Predicted nucleot 22.7 2.6E+02 0.0057 23.6 5.7 74 45-148 20-94 (255)
242 PRK13307 bifunctional formalde 22.7 4E+02 0.0087 24.1 7.2 57 111-173 249-305 (391)
243 PLN02509 cystathionine beta-ly 22.6 6.3E+02 0.014 23.5 9.7 38 112-149 217-255 (464)
244 cd01408 SIRT1 SIRT1: Eukaryoti 22.3 3.8E+02 0.0083 22.2 6.7 40 109-150 172-211 (235)
245 cd04915 ACT_AK-Ectoine_2 ACT d 22.0 2.2E+02 0.0048 18.0 6.2 43 36-78 2-48 (66)
246 cd02812 PcrB_like PcrB_like pr 21.8 2.1E+02 0.0046 23.5 4.9 50 111-172 24-75 (219)
247 COG0299 PurN Folate-dependent 21.7 3.8E+02 0.0082 21.7 6.0 97 11-132 3-99 (200)
248 PRK05690 molybdopterin biosynt 21.6 4.8E+02 0.01 21.7 8.8 35 108-146 118-152 (245)
249 COG0106 HisA Phosphoribosylfor 21.4 1.5E+02 0.0032 24.8 3.9 55 3-59 68-122 (241)
250 PRK07535 methyltetrahydrofolat 21.2 5.1E+02 0.011 21.9 7.7 42 111-152 37-80 (261)
251 PLN02689 Bifunctional isoaspar 21.2 1E+02 0.0023 26.9 3.1 35 242-276 233-273 (318)
252 cd02772 MopB_NDH-1_NuoG2 MopB_ 21.1 5.8E+02 0.013 22.9 8.2 44 109-152 149-193 (414)
253 PRK08861 cystathionine gamma-s 21.1 6.1E+02 0.013 22.8 8.4 38 112-149 138-176 (388)
254 smart00642 Aamy Alpha-amylase 21.1 1.3E+02 0.0027 23.5 3.4 27 126-152 68-94 (166)
255 cd07018 S49_SppA_67K_type Sign 21.1 1E+02 0.0022 25.2 3.0 50 15-66 88-137 (222)
256 cd00885 cinA Competence-damage 20.9 3.1E+02 0.0067 21.4 5.5 32 24-57 23-54 (170)
257 KOG1481 Cysteine synthase [Ami 20.8 4.5E+02 0.0097 22.8 6.6 59 109-171 318-381 (391)
258 PF03266 NTPase_1: NTPase; In 20.6 4.1E+02 0.0089 20.6 7.1 122 49-174 17-156 (168)
259 PF02492 cobW: CobW/HypB/UreG, 20.5 1.2E+02 0.0025 23.8 3.1 67 112-179 84-154 (178)
260 PF03807 F420_oxidored: NADP o 20.3 1.6E+02 0.0035 19.9 3.5 22 39-60 2-23 (96)
261 PF12641 Flavodoxin_3: Flavodo 20.3 2E+02 0.0043 22.3 4.2 39 110-148 37-76 (160)
262 PRK05994 O-acetylhomoserine am 20.3 6.7E+02 0.014 22.9 9.5 38 112-149 148-186 (427)
263 PF03668 ATP_bind_2: P-loop AT 20.2 3.5E+02 0.0075 23.3 6.0 41 108-152 19-64 (284)
264 PRK01215 competence damage-ind 20.1 2.7E+02 0.0058 23.7 5.3 45 20-66 23-67 (264)
No 1
>PTZ00247 adenosine kinase; Provisional
Probab=100.00 E-value=7.5e-48 Score=339.25 Aligned_cols=293 Identities=51% Similarity=0.881 Sum_probs=243.8
Q ss_pred HhhhcCCCceeecCChhHHHHHHHHHhhcCCC-cEEEEEeecCCchhHHHHHHHHhcCCceeEEecCCCCceeEEEEEeC
Q 022475 3 DELASKENVEYIAGGATQNSIKVAQWMLQIPG-ATSYIGCIGKDKFGEEMKKNSTAAGVNVKYYEDESAPTGTCAVCVVG 81 (296)
Q Consensus 3 ~~~~~~~~~~~~~GG~~~n~a~~~~~l~~lg~-~v~~~~~vG~D~~g~~i~~~l~~~gi~~~~~~~~~~~t~~~~~~~~~ 81 (296)
+++....+.+..+||++.|+|+++++|..+|. +|.++|.||+|.+|+.+++.|+++||++++++.++.+|+.+++++++
T Consensus 49 ~~~~~~~~~~~~~GG~~~N~A~~la~lg~~g~~~v~~ig~vG~D~~G~~i~~~l~~~GVd~~~~~~~~~~Tg~~~i~v~~ 128 (345)
T PTZ00247 49 EELESIPNVSYVPGGSALNTARVAQWMLQAPKGFVCYVGCVGDDRFAEILKEAAEKDGVEMLFEYTTKAPTGTCAVLVCG 128 (345)
T ss_pred HHHHhccCceecCCCHHHHHHHHHHHHhcCCCCcEEEEEEeccchhHHHHHHHHHHcCCeeeccccCCCCcEEEEEEEcC
Confidence 44555566789999999999999998655566 99999999999999999999999999998876677789999998887
Q ss_pred CeeceeeccccccccCccccCChhhhhhhhcceEEEEeccccccChHHHHHHHHHHhhCCCEEEEeCCchhhhhhhhHHH
Q 022475 82 GERSLVANLSAANCYKSEHLKRPEIWSIVEKAKYYYIAGFFLTVSPESIQMVAEHAAAKNKVFMMNLSAPFICEFFREPQ 161 (296)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 161 (296)
++|+++.+.+++..++++.+......+.+.+++++|++++.+..+++.+..+++.+++.++++++|++.+.+.....+.+
T Consensus 129 ~~r~~~~~~ga~~~l~~~~i~~~~~~~~l~~~~~v~~~g~~~~~~~~~~~~~~~~a~~~g~~v~~d~~~~~~~~~~~~~~ 208 (345)
T PTZ00247 129 KERSLVANLGAANHLSAEHMQSHAVQEAIKTAQLYYLEGFFLTVSPNNVLQVAKHARESGKLFCLNLSAPFISQFFFERL 208 (345)
T ss_pred CCcccccCcchhhcCChHHcCcHHHHHHHhhCCEEEEEEEEecccHHHHHHHHHHHHHcCCEEEEECCcHHHHHHHHHHH
Confidence 89998888888888888877652223357899999999986666788899999999999999999987665543444567
Q ss_pred HhhcCCCcEEEcCHHHHHHHHHHcCCCCCCHHHHHHHHhcCCCCCCCCceEEEEeeCCCcEEEEECCeEEEEecccCCCc
Q 022475 162 EKALPYMDYVFGNETEARTFAKVHGWETDNVEEIALKISQWPKASGTHKRITVITQGADPVVVAEDGKVKLFPVILLPKE 241 (296)
Q Consensus 162 ~~~l~~~dv~~~n~~E~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~~ 241 (296)
.++++++|++++|++|++.|++....+.++.+++++.+.++....+.+.+.+|||+|++|++++++++.+++|++++++.
T Consensus 209 ~~~l~~~Dil~~N~~Ea~~l~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vvvT~G~~G~~~~~~~~~~~~~~~~v~~~ 288 (345)
T PTZ00247 209 LQVLPYVDILFGNEEEAKTFAKAMKWDTEDLKEIAARIAMLPKYSGTRPRLVVFTQGPEPTLIATKDGVTSVPVPPLDQE 288 (345)
T ss_pred HHHHhhCCEEEeCHHHHHHHhhccCCCccCHHHHHHHHHhccccccCCCCEEEEecCCCceEEEECCEEEEEeccccCCC
Confidence 88999999999999999999874333335678888777533110123577899999999999999998888888776444
Q ss_pred cccCCCCCchhhhHHHHHHHhcCCCHHHHHHHhhHHhhhhhhhccCCCCCCCCC
Q 022475 242 KLVDTNGAGDAFVGGFLSQLVQEKPVEDCVRTGCYAANVVIQRSGCTYPPKPEF 295 (296)
Q Consensus 242 ~vvd~tGaGDaf~ag~~~~l~~~~~~~~a~~~A~~~aa~~~~~~G~~~~~~~~~ 295 (296)
++||||||||+|+|||++++++|+++++|+++|+++|+.++++.|+.+|.++++
T Consensus 289 ~vVDTtGAGDaF~agfl~~l~~g~~~~~al~~a~~aAa~~v~~~Ga~~~~~~~~ 342 (345)
T PTZ00247 289 KIVDTNGAGDAFVGGFLAQYANGKDIDRCVEAGHYSAQVIIQHNGCTYPEKPPF 342 (345)
T ss_pred CccCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhccCCCCCCCCCC
Confidence 699999999999999999999999999999999999999999999988877654
No 2
>PLN02548 adenosine kinase
Probab=100.00 E-value=8.3e-47 Score=331.26 Aligned_cols=294 Identities=84% Similarity=1.303 Sum_probs=243.8
Q ss_pred HhhhcCCCceeecCChhHHHHHHHHHhhcCCCcEEEEEeecCCchhHHHHHHHHhcCCceeEEecCCCCceeEEEEEeCC
Q 022475 3 DELASKENVEYIAGGATQNSIKVAQWMLQIPGATSYIGCIGKDKFGEEMKKNSTAAGVNVKYYEDESAPTGTCAVCVVGG 82 (296)
Q Consensus 3 ~~~~~~~~~~~~~GG~~~n~a~~~~~l~~lg~~v~~~~~vG~D~~g~~i~~~l~~~gi~~~~~~~~~~~t~~~~~~~~~~ 82 (296)
++.....+.+..+||++.|+|.++++|.++|.++.|+|.+|+|.+|+.+++.|+++||+++++..++.+|+.+++++++|
T Consensus 39 ~~~~~~~~~~~~~GG~~~Nva~~a~~l~~lg~~~~~ig~vG~D~~g~~i~~~L~~~gVd~~~~~~~~~~T~~~~i~~~~g 118 (332)
T PLN02548 39 DELASKYNVEYIAGGATQNSIRVAQWMLQIPGATSYMGCIGKDKFGEEMKKCATAAGVNVHYYEDESTPTGTCAVLVVGG 118 (332)
T ss_pred HHHhccCCceecCCcHHHHHHHHHHHHhcCCCcEEEEEEEcCChhHHHHHHHHHHcCCceeeeccCCCCCceEEEEEecC
Confidence 55667788899999999999988887777889999999999999999999999999999999866777899999888888
Q ss_pred eeceeeccccccccCccccCChhhhhhhhcceEEEEeccccccChHHHHHHHHHHhhCCCEEEEeCCchhhhhhhhHHHH
Q 022475 83 ERSLVANLSAANCYKSEHLKRPEIWSIVEKAKYYYIAGFFLTVSPESIQMVAEHAAAKNKVFMMNLSAPFICEFFREPQE 162 (296)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 162 (296)
+|+++.+.+....++.+.+...+.++.+..+|++|++|+.+..+++.+..+++.+++++.++++|++.+.|.+...+.++
T Consensus 119 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~~~a~~~g~~~~~~~~~~~~~~~~~~~l~ 198 (332)
T PLN02548 119 ERSLVANLSAANCYKVEHLKKPENWALVEKAKFYYIAGFFLTVSPESIMLVAEHAAANNKTFMMNLSAPFICEFFKDQLM 198 (332)
T ss_pred CceeeeccchhhcCCHHHhcChhhHhHHhhCCEEEEEEEEccCCHHHHHHHHHHHHHcCCEEEEECCChhHHHHhHHHHH
Confidence 88887776665556655554322334578999999999877677888889999999999999999987777555566788
Q ss_pred hhcCCCcEEEcCHHHHHHHHHHcCCCCCCHHHHHHHHhcCCCCCCCCceEEEEeeCCCcEEEEECCeEEEEecccCCCcc
Q 022475 163 KALPYMDYVFGNETEARTFAKVHGWETDNVEEIALKISQWPKASGTHKRITVITQGADPVVVAEDGKVKLFPVILLPKEK 242 (296)
Q Consensus 163 ~~l~~~dv~~~n~~E~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~~~ 242 (296)
++++++|++++|++|++.+++....+.++.++.++.+.++....+.+++.+|+|+|++|++++++++.+++|++++++++
T Consensus 199 ~~l~~~dil~~n~~E~~~l~g~~~~~~~~~~~~~~~l~~~~~~~g~~~~~vvvT~G~~G~~~~~~~~~~~~pa~~~~~~~ 278 (332)
T PLN02548 199 EALPYVDFLFGNETEARTFAKVQGWETEDVEEIALKISALPKASGTHKRTVVITQGADPTVVAEDGKVKEFPVIPLPKEK 278 (332)
T ss_pred HHHhhCCEEEecHHHHHHHhCccCCCcccHHHHHHHHHHhhhhccccCCEEEEEeCCCcEEEEECCeEEEeccccCCcCc
Confidence 99999999999999999998754433356666666554221001235789999999999999999888888876655668
Q ss_pred ccCCCCCchhhhHHHHHHHhcCCCHHHHHHHhhHHhhhhhhhccCCCCCCCCCC
Q 022475 243 LVDTNGAGDAFVGGFLSQLVQEKPVEDCVRTGCYAANVVIQRSGCTYPPKPEFN 296 (296)
Q Consensus 243 vvd~tGaGDaf~ag~~~~l~~~~~~~~a~~~A~~~aa~~~~~~G~~~~~~~~~~ 296 (296)
+||||||||+|+|||++++++|+++++|+++|+++|++++++.|+..|.+++++
T Consensus 279 vvDttGAGDaF~ag~l~~l~~g~~l~eal~~a~aaAa~~v~~~G~~~~~~~~~~ 332 (332)
T PLN02548 279 LVDTNGAGDAFVGGFLSQLVQGKDIEECVRAGNYAANVIIQRSGCTYPEKPDFS 332 (332)
T ss_pred cccCCCchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhccCCCCCCCccCC
Confidence 999999999999999999999999999999999999999999999999888763
No 3
>KOG2854 consensus Possible pfkB family carbohydrate kinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=6.9e-46 Score=305.96 Aligned_cols=296 Identities=61% Similarity=1.066 Sum_probs=274.4
Q ss_pred ChHhhhcCCCceeecCChhHHHHHHHHHhhcCCCcEEEEEeecCCchhHHHHHHHHhcCCceeEEecCCCCceeEEEEEe
Q 022475 1 MYDELASKENVEYIAGGATQNSIKVAQWMLQIPGATSYIGCIGKDKFGEEMKKNSTAAGVNVKYYEDESAPTGTCAVCVV 80 (296)
Q Consensus 1 ~~~~~~~~~~~~~~~GG~~~n~a~~~~~l~~lg~~v~~~~~vG~D~~g~~i~~~l~~~gi~~~~~~~~~~~t~~~~~~~~ 80 (296)
+||+..+..+.+..+||++.|++++++++++....+.|+|+||.|.+|+.+++.+++.||+..+.+.++.+||.|..++.
T Consensus 48 ~~~E~~~~~~~~~~AGGs~qNt~R~aq~~~~~p~~~~f~GsvG~Dk~ge~l~~~~~~aGv~~~yq~~~d~~TGtCavli~ 127 (343)
T KOG2854|consen 48 LFDELMEGFNVKYSAGGSAQNTLRIAQWLLQQPGATVFFGSVGKDKFGELLKSKARAAGVNVHYQVKEDGPTGTCAVLIT 127 (343)
T ss_pred HHHHHhhcccEEecCCchhHHHHHHHHHHccCCCceEEEeeccCchHHHHHHHHHHhcCceEEEEeccCCCCceEEEEEe
Confidence 47888899999999999999999999998774459999999999999999999999999999999999999999999999
Q ss_pred CCeeceeeccccccccCccccCChhhhhhhhcceEEEEeccccccChHHHHHHHHHHhhCCCEEEEeCCchhhhhhhhHH
Q 022475 81 GGERSLVANLSAANCYKSEHLKRPEIWSIVEKAKYYYIAGFFLTVSPESIQMVAEHAAAKNKVFMMNLSAPFICEFFREP 160 (296)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 160 (296)
+..|++..+.++...++.+++..+++|..++++.++|+.|+++..+|+.++.+.+.+.+.+.++.+|++.++..+.+++.
T Consensus 128 ~~nRSL~anLgAAn~f~~dhl~~~~~~~lveka~v~yv~Gffltv~p~ai~~v~qh~~e~~r~~~lnlsapfI~q~~~~~ 207 (343)
T KOG2854|consen 128 GDNRSLCANLGAANCFKVDHLDKEENWALVEKAKVFYVAGFFLTVSPDAIRKVAQHAAENNRVFTLNLSAPFISQFFKDA 207 (343)
T ss_pred CCCcchhhccchhhccCHHHhcchhhhhhhhheeEEEEEEEEEEeChHHHHHHHHHHHHhcchhheeccchhHHHHHHHH
Confidence 66699999999999999999988788889999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCCCcEEEcCHHHHHHHHHHcCCCCCCHHHHHHHHhcCCCCCCCCceEEEEeeCCCcEEEEECCeEEEEecccCCC
Q 022475 161 QEKALPYMDYVFGNETEARTFAKVHGWETDNVEEIALKISQWPKASGTHKRITVITQGADPVVVAEDGKVKLFPVILLPK 240 (296)
Q Consensus 161 ~~~~l~~~dv~~~n~~E~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~ 240 (296)
+...++++|+++.|++|++.+....+....+..+....++.+++..+...+.+++|.|.++++...+++....|..+.+.
T Consensus 208 l~~v~~y~DiifgNe~EA~af~~~~~~~t~dv~eia~~~~~~~k~~~~~~r~vvit~g~~~~i~~~~~~v~~~~v~~~~~ 287 (343)
T KOG2854|consen 208 LDKVLPYADIIFGNEDEAAAFARAHGWETKDVKEIALKLSALPKVNGTRPRTVVITQGPDPVIVAEDGKVTAYPVLPLPV 287 (343)
T ss_pred HHhhcCcceEEEcCHHHHHHHHHhhCCcccchHHHhhHhhccccccccccceEEEccCCCceEEecCCceEEeccccccc
Confidence 99999999999999999999998777777788888888877776565677899999999999999999888888888887
Q ss_pred ccccCCCCCchhhhHHHHHHHhcCCCHHHHHHHhhHHhhhhhhhccCCCCCCCCCC
Q 022475 241 EKLVDTNGAGDAFVGGFLSQLVQEKPVEDCVRTGCYAANVVIQRSGCTYPPKPEFN 296 (296)
Q Consensus 241 ~~vvd~tGaGDaf~ag~~~~l~~~~~~~~a~~~A~~~aa~~~~~~G~~~~~~~~~~ 296 (296)
.+++||+||||+|++||++++.+|.++++|++.+..+|+.+++..|+++|.+++|.
T Consensus 288 ~~ivDtnGAGDaFvgGFl~~l~qg~~l~~cir~g~~aa~~vi~~~G~~~p~~~~~~ 343 (343)
T KOG2854|consen 288 EEIVDTNGAGDAFVGGFLSQLVQGKSLEECIRAGSYAASHVIRRVGCTVPEKPDFH 343 (343)
T ss_pred eeeeeCCCchHHHHHHHHHHHHcCCCHHHHHHHHHHHhhheeeccCCCCCCCCCCC
Confidence 79999999999999999999999999999999999999999999999999988763
No 4
>cd01168 adenosine_kinase Adenosine kinase (AK) catalyzes the phosphorylation of ribofuranosyl-containing nucleoside analogues at the 5'-hydroxyl using ATP or GTP as the phosphate donor.The physiological function of AK is associated with the regulation of extracellular adenosine levels and the preservation of intracellular adenylate pools. Adenosine kinase is involved in the purine salvage pathway.
Probab=100.00 E-value=2e-44 Score=313.68 Aligned_cols=263 Identities=48% Similarity=0.764 Sum_probs=226.9
Q ss_pred CceeecCChhHHHHHHHHHhhcCCCcEEEEEeecCCchhHHHHHHHHhcCCceeEEecCCCCceeEEEEEe-CCeeceee
Q 022475 10 NVEYIAGGATQNSIKVAQWMLQIPGATSYIGCIGKDKFGEEMKKNSTAAGVNVKYYEDESAPTGTCAVCVV-GGERSLVA 88 (296)
Q Consensus 10 ~~~~~~GG~~~n~a~~~~~l~~lg~~v~~~~~vG~D~~g~~i~~~l~~~gi~~~~~~~~~~~t~~~~~~~~-~~~~~~~~ 88 (296)
+....+||++.|+|.++++ +|.++.++|.+|+|.+|+.+++.|+++||++++++..+.+|+.++++++ +|+|+++.
T Consensus 49 ~~~~~~GG~~~N~A~~la~---LG~~~~~i~~vG~D~~g~~i~~~l~~~GV~~~~~~~~~~~t~~~~~~~~~~g~r~~~~ 125 (312)
T cd01168 49 PVKYIAGGSAANTIRGAAA---LGGSAAFIGRVGDDKLGDFLLKDLRAAGVDTRYQVQPDGPTGTCAVLVTPDAERTMCT 125 (312)
T ss_pred CccccCCCHHHHHHHHHHH---hcCCeEEEEEeccChhHHHHHHHHHHCCCccccccCCCCCceEEEEEEcCCCceeeec
Confidence 4678899999999999997 4599999999999999999999999999999988755678999999988 78999888
Q ss_pred ccccccccCccccCChhhhhhhhcceEEEEeccccccChHHHHHHHHHHhhCCCEEEEeCCchhhhhhhhHHHHhhcCCC
Q 022475 89 NLSAANCYKSEHLKRPEIWSIVEKAKYYYIAGFFLTVSPESIQMVAEHAAAKNKVFMMNLSAPFICEFFREPQEKALPYM 168 (296)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~ 168 (296)
+.+++..++++.+.. +.+.++|++|++++....+++.+..+++.+++.|.++++|+..+.+.....+.++++++++
T Consensus 126 ~~~~~~~~~~~~~~~----~~l~~~~~v~~~~~~~~~~~~~~~~~~~~a~~~g~~v~~d~~~~~~~~~~~~~~~~~l~~~ 201 (312)
T cd01168 126 YLGAANELSPDDLDW----SLLAKAKYLYLEGYLLTVPPEAILLAAEHAKENGVKIALNLSAPFIVQRFKEALLELLPYV 201 (312)
T ss_pred ccchhhcCChhHCCH----HHHccCCEEEEEEEecCCCHHHHHHHHHHHHHcCCEEEEeCCcHHHHHHHHHHHHHHHhhC
Confidence 888777788777753 5578999999999766566688889999999999999999975544444556678899999
Q ss_pred cEEEcCHHHHHHHHHHcCCCCCCHHHHHHHHhcCCCCCCCCceEEEEeeCCCcEEEEECCeEEEEecccCCCccccCCCC
Q 022475 169 DYVFGNETEARTFAKVHGWETDNVEEIALKISQWPKASGTHKRITVITQGADPVVVAEDGKVKLFPVILLPKEKLVDTNG 248 (296)
Q Consensus 169 dv~~~n~~E~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~~~vvd~tG 248 (296)
|++++|++|++.+++. +.++..+.++.+ .+.+++.+|+|+|++|++++++++.+++|++++ +++|||||
T Consensus 202 d~l~~n~~E~~~l~~~---~~~~~~~~a~~l------~~~g~~~vvvt~G~~G~~~~~~~~~~~~~~~~~--~~vvDttG 270 (312)
T cd01168 202 DILFGNEEEAEALAEA---ETTDDLEAALKL------LALRCRIVVITQGAKGAVVVEGGEVYPVPAIPV--EKIVDTNG 270 (312)
T ss_pred CEEEeCHHHHHHHhCC---CCCChHHHHHHH------HhcCCCEEEEecCCCCeEEEECCEEEeCCCCCC--CCcccCCc
Confidence 9999999999999863 124566777777 456789999999999999999888888887651 38999999
Q ss_pred CchhhhHHHHHHHhcCCCHHHHHHHhhHHhhhhhhhccCCCC
Q 022475 249 AGDAFVGGFLSQLVQEKPVEDCVRTGCYAANVVIQRSGCTYP 290 (296)
Q Consensus 249 aGDaf~ag~~~~l~~~~~~~~a~~~A~~~aa~~~~~~G~~~~ 290 (296)
|||+|+|||++++++|+++++|+++|+++|++++++.|+..|
T Consensus 271 AGDaf~ag~l~~l~~g~~~~~a~~~a~~~Aa~~v~~~G~~~~ 312 (312)
T cd01168 271 AGDAFAGGFLYGLVQGEPLEECIRLGSYAAAEVIQQLGPRLP 312 (312)
T ss_pred hHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhccCCCCC
Confidence 999999999999999999999999999999999999998643
No 5
>PLN02813 pfkB-type carbohydrate kinase family protein
Probab=100.00 E-value=5.8e-43 Score=313.41 Aligned_cols=264 Identities=20% Similarity=0.269 Sum_probs=220.0
Q ss_pred cCCCceeecCChhHHHHHHHHHhhcCC--------CcEEEEEeecCCchhHHHHHHHHhcCCceeEEecCCCCceeEEEE
Q 022475 7 SKENVEYIAGGATQNSIKVAQWMLQIP--------GATSYIGCIGKDKFGEEMKKNSTAAGVNVKYYEDESAPTGTCAVC 78 (296)
Q Consensus 7 ~~~~~~~~~GG~~~n~a~~~~~l~~lg--------~~v~~~~~vG~D~~g~~i~~~l~~~gi~~~~~~~~~~~t~~~~~~ 78 (296)
........+||++.|+|+++++ || .+|.++|.||+|.+|+.+++.|++.||++.++...+.+|+.++++
T Consensus 117 ~~~~~~~~~GG~~~N~Avalar---LG~~~~~~~~~~v~~ig~VG~D~~G~~i~~~L~~~GVd~~~~~~~~~~Tg~~~il 193 (426)
T PLN02813 117 DGCSYKASAGGSLSNTLVALAR---LGSQSAAGPALNVAMAGSVGSDPLGDFYRTKLRRANVHFLSQPVKDGTTGTVIVL 193 (426)
T ss_pred hccCceEecCcHHHHHHHHHHH---hccccccCCCCcEEEEEEeCCChHHHHHHHHHHHcCCcccceecCCCCceEEEEE
Confidence 3556778999999999999998 45 699999999999999999999999999999887667789999998
Q ss_pred Ee-CCeeceeeccccccccCccccCChhhhhhhhcceEEEEeccccccCh--HHHHHHHHHHhhCCCEEEEeCCchhhhh
Q 022475 79 VV-GGERSLVANLSAANCYKSEHLKRPEIWSIVEKAKYYYIAGFFLTVSP--ESIQMVAEHAAAKNKVFMMNLSAPFICE 155 (296)
Q Consensus 79 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~--~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 155 (296)
++ +|+|+++.+.+++..++++.+. .+.+++++++|++++....+. +.+..+++.+++.|+++++|+.......
T Consensus 194 v~~~gertii~~~Ga~~~l~~~~~~----~~~i~~adiv~l~g~~~~~~~~~~~~~~~~~~ak~~g~~v~~d~s~~~~~~ 269 (426)
T PLN02813 194 TTPDAQRTMLSYQGTSSTVNYDSCL----ASAISKSRVLVVEGYLWELPQTIEAIAQACEEAHRAGALVAVTASDVSCIE 269 (426)
T ss_pred EcCCCCceeeeccCchhhCCccccC----HHHHhcCCEEEEEeeecCCCchHHHHHHHHHHHHHcCCEEEEECCCcchhh
Confidence 87 7999999888877666665443 256789999999987654443 6778899999999999999987543222
Q ss_pred hhh-HHHHhhcCCCcEEEcCHHHHHHHHHHcCCCCCCHHHHHHHHhcCCCCCCCCceEEEEeeCCCcEEEEECCeEEEEe
Q 022475 156 FFR-EPQEKALPYMDYVFGNETEARTFAKVHGWETDNVEEIALKISQWPKASGTHKRITVITQGADPVVVAEDGKVKLFP 234 (296)
Q Consensus 156 ~~~-~~~~~~l~~~dv~~~n~~E~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~vvvt~G~~G~~~~~~~~~~~~~ 234 (296)
.++ +..+.+++++|++++|++|+..+++.. ..++.+++.+.+. .+++.+|||+|++|++++++++.+++|
T Consensus 270 ~~~~~l~~~ll~~vDil~~Ne~Ea~~l~g~~--~~~~~~~a~~~L~-------~~~~~VVVT~G~~Ga~~~~~~~~~~~p 340 (426)
T PLN02813 270 RHRDDFWDVMGNYADILFANSDEARALCGLG--SEESPESATRYLS-------HFCPLVSVTDGARGSYIGVKGEAVYIP 340 (426)
T ss_pred hhHHHHHHHHHhcCCEEEeCHHHHHHHhCCC--CCCCHHHHHHHHH-------cCCCEEEEEeCCCCeEEEECCEEEEeC
Confidence 222 233455689999999999999998642 1346777777773 357899999999999999999999988
Q ss_pred cccCCCccccCCCCCchhhhHHHHHHHhcCC-CHHHHHHHhhHHhhhhhhhccCCC
Q 022475 235 VILLPKEKLVDTNGAGDAFVGGFLSQLVQEK-PVEDCVRTGCYAANVVIQRSGCTY 289 (296)
Q Consensus 235 ~~~~~~~~vvd~tGaGDaf~ag~~~~l~~~~-~~~~a~~~A~~~aa~~~~~~G~~~ 289 (296)
++++ ++||||||||+|+|||++++++|+ ++++++++|+++|+.++++.|+..
T Consensus 341 a~~v---~vVDTtGAGDAF~Agfl~~l~~G~~~l~~al~~A~a~Aa~~v~~~Ga~~ 393 (426)
T PLN02813 341 PSPC---VPVDTCGAGDAYAAGILYGLLRGVSDLRGMGELAARVAATVVGQQGTRL 393 (426)
T ss_pred CCCC---CcccCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcccCCCc
Confidence 7755 899999999999999999999999 999999999999999999999843
No 6
>PRK15074 inosine/guanosine kinase; Provisional
Probab=100.00 E-value=2.1e-42 Score=307.79 Aligned_cols=271 Identities=17% Similarity=0.253 Sum_probs=218.8
Q ss_pred hHhhhcCCC-ceeecCChhHHHHHHHHHhhcCCCcEEEEEeecCC-chhHHHHHHHH--hcCCceeEEecCCCCceeEEE
Q 022475 2 YDELASKEN-VEYIAGGATQNSIKVAQWMLQIPGATSYIGCIGKD-KFGEEMKKNST--AAGVNVKYYEDESAPTGTCAV 77 (296)
Q Consensus 2 ~~~~~~~~~-~~~~~GG~~~n~a~~~~~l~~lg~~v~~~~~vG~D-~~g~~i~~~l~--~~gi~~~~~~~~~~~t~~~~~ 77 (296)
|+++..... ....+||++.|+|+++++|. |.++.|+|.||+| .+|+.+++.|+ +.||++++++..+.+|+.+++
T Consensus 77 ~~~l~~~~~~~~~~~GGsaaNtA~~lArLG--G~~~~fig~VGdDd~~G~~~~~~L~~~~~GVdt~~v~~~~~~TG~~~V 154 (434)
T PRK15074 77 YQELKQNNLITHEFAGGTIGNTLHNYSVLA--DDRSVLLGVMSSNIEIGSYAYRYLCNTSSRTDLNYLQGVDGPIGRCFT 154 (434)
T ss_pred HHHHhhccccccccCCCHHHHHHHHHHHcC--CCCeEEEEEeCCCHHHHHHHHHHhhhhhCCccCcceEEcCCCCEEEEE
Confidence 445544332 35679999999999999832 4899999999999 79999999997 689999998655568999999
Q ss_pred EEe-CCeeceeeccccccccCccccCChhhhhhhhcceEEEEeccccc-----cChHHHHHHHHHHhhCCCEEEEeCCch
Q 022475 78 CVV-GGERSLVANLSAANCYKSEHLKRPEIWSIVEKAKYYYIAGFFLT-----VSPESIQMVAEHAAAKNKVFMMNLSAP 151 (296)
Q Consensus 78 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~-----~~~~~~~~~~~~~~~~~~~~~~d~~~~ 151 (296)
+++ +|+|+++.+.+++..++++++.. ..+.+++++|++|+.+. ..++.+..+++.+++.|+++++|+..+
T Consensus 155 lV~~dGeRt~~t~~GA~~~Lt~edld~----~~i~~a~ilyl~Gy~l~~~~~~~~~~a~~~al~~Ake~G~~VslD~s~~ 230 (434)
T PRK15074 155 LISEDGERTFAISPGHMNQLRPESIPE----DVIAGASALVLTAYLVRCKPGEPMPEATMKAIEYAKKHNVPVVLTLGTK 230 (434)
T ss_pred EECCCCCEEEEEecChhhcCChhHCCH----hHhccCCEEEEeeeehhcccCCCcHHHHHHHHHHHHHcCCEEEEECcch
Confidence 997 89999999999888898888774 56889999999998754 235778899999999999999999765
Q ss_pred hhhhhhhH-HHHhhcCCCcEEEcCHHHHHHHHHHcCCCCCCHHHHHHHHhcCCCCCCCCceEEEEeeCCCcEEEEECCe-
Q 022475 152 FICEFFRE-PQEKALPYMDYVFGNETEARTFAKVHGWETDNVEEIALKISQWPKASGTHKRITVITQGADPVVVAEDGK- 229 (296)
Q Consensus 152 ~~~~~~~~-~~~~~l~~~dv~~~n~~E~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~vvvt~G~~G~~~~~~~~- 229 (296)
.......+ +...+++++|++++|++|+..|++ .++++++++.+. . +++.|+||+|++|++++..++
T Consensus 231 ~~v~~~~~~~~e~l~~~vDILf~NeeEa~~LtG-----~~d~eea~~~L~------~-~~~~VVVTlG~~Ga~v~~~~~~ 298 (434)
T PRK15074 231 FVIEDNPQWWQEFLKEHVSILAMNEDEAEALTG-----ESDPLLASDKAL------D-WVDLVLCTAGPIGLYMAGYTED 298 (434)
T ss_pred hhccccHHHHHHHHHhcCCEEEcCHHHHHHHhC-----CCCHHHHHHHHH------c-CCCEEEEEECCCCEEEEecccc
Confidence 43222222 233456799999999999999986 457888888884 2 368999999999999975222
Q ss_pred ------EE--------------------------------EEecccCCCccccCCCCCchhhhHHHHHHHhcCC------
Q 022475 230 ------VK--------------------------------LFPVILLPKEKLVDTNGAGDAFVGGFLSQLVQEK------ 265 (296)
Q Consensus 230 ------~~--------------------------------~~~~~~~~~~~vvd~tGaGDaf~ag~~~~l~~~~------ 265 (296)
.+ ++|+++..++++||||||||+|+|||+|+|.+|+
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vDttGAGD~f~~gfl~~l~~g~~~~~~~ 378 (434)
T PRK15074 299 EAKRETQHPLLPGAIAEFNRYEFSRAMRKKDCQNPLRVYSHIAPYMGGPEKIMNTNGAGDGALSALLHDITANSYHRSNV 378 (434)
T ss_pred cccCceeeeccccccccccchhcccchhccccccccccccccCcccCCCCcceeCCCcHHHHHHHHHHHHHCCCcccccc
Confidence 12 6665522245899999999999999999999998
Q ss_pred --------------CHHHHHHHhhHHhhhhhhhccCCCC
Q 022475 266 --------------PVEDCVRTGCYAANVVIQRSGCTYP 290 (296)
Q Consensus 266 --------------~~~~a~~~A~~~aa~~~~~~G~~~~ 290 (296)
++.+|+++|+++|+.++++.|++++
T Consensus 379 ~~~~~~~~~~~~~~~l~~~~~~~~~~a~~vi~~~G~~~~ 417 (434)
T PRK15074 379 PNSSKHKRTYLTYSSLAQVCKYANRVSYEVLNQHSPRLS 417 (434)
T ss_pred cccccccccccccCCHHHHHHHHHHHHHHHHhhcCCCCC
Confidence 8999999999999999999999443
No 7
>PLN02379 pfkB-type carbohydrate kinase family protein
Probab=100.00 E-value=2.6e-42 Score=304.63 Aligned_cols=262 Identities=24% Similarity=0.358 Sum_probs=219.5
Q ss_pred CceeecCChhHHHHHHHHHhhcCCCcEEEEEeecCCchhHHHHHHHHhcCCceeEEecCCCCceeEEEEEe-CCeeceee
Q 022475 10 NVEYIAGGATQNSIKVAQWMLQIPGATSYIGCIGKDKFGEEMKKNSTAAGVNVKYYEDESAPTGTCAVCVV-GGERSLVA 88 (296)
Q Consensus 10 ~~~~~~GG~~~n~a~~~~~l~~lg~~v~~~~~vG~D~~g~~i~~~l~~~gi~~~~~~~~~~~t~~~~~~~~-~~~~~~~~ 88 (296)
+.+.++||++.|+++++++. +|.++.++|.||+|.+|+.+++.|++.||++++++..+.+|+.++++++ +++|++..
T Consensus 80 ~~~~~~GGsa~N~a~~la~~--LG~~~~~ig~VG~D~~G~~~~~~L~~~GI~~~~~~~~~~~Tg~~~v~v~~dgert~~~ 157 (367)
T PLN02379 80 PIKTMAGGSVANTIRGLSAG--FGVSTGIIGACGDDEQGKLFVSNMGFSGVDLSRLRAKKGPTAQCVCLVDALGNRTMRP 157 (367)
T ss_pred cceecCCCHHHHHHHHHHHh--cCCCEEEEEEeCCChhHHHHHHHHHHcCCCccCcccCCCCCceEEEEECCCCCccccC
Confidence 46788999999999998742 4599999999999999999999999999999887656678999999987 88999877
Q ss_pred ccccccccCccccCChhhhhhhhcceEEEEeccccccChHHHHHHHHHHhhCCCEEEEeCCchhhhhhhhHHHHhhcC--
Q 022475 89 NLSAANCYKSEHLKRPEIWSIVEKAKYYYIAGFFLTVSPESIQMVAEHAAAKNKVFMMNLSAPFICEFFREPQEKALP-- 166 (296)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~-- 166 (296)
+.+....++++++.. +.+++++++|++ +.. .+++.+.++++.++++|+++++|++.+.....+++.+.++++
T Consensus 158 ~lg~~~~l~~~~~~~----~~~~~~~~v~v~-~~~-~~~~~~~~~~~~A~~~g~~v~lD~s~~~~v~~~r~~l~~ll~~~ 231 (367)
T PLN02379 158 CLSSAVKLQADELTK----EDFKGSKWLVLR-YGF-YNLEVIEAAIRLAKQEGLSVSLDLASFEMVRNFRSPLLQLLESG 231 (367)
T ss_pred CccccccCChhHCCH----HHHhcCCEEEEE-ccc-CCHHHHHHHHHHHHHcCCEEEEeccchhhhhhhhHHHHHHhhcC
Confidence 666666666666653 457899999999 432 467888999999999999999999876555555666777774
Q ss_pred CCcEEEcCHHHHHHHHHHcCCCCCCHHHHHHHHhcCCCCCCCCceEEEEeeCCCcEEEEECCeEEEEecccCCCccccCC
Q 022475 167 YMDYVFGNETEARTFAKVHGWETDNVEEIALKISQWPKASGTHKRITVITQGADPVVVAEDGKVKLFPVILLPKEKLVDT 246 (296)
Q Consensus 167 ~~dv~~~n~~E~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~~~vvd~ 246 (296)
++|++++|++|+..+++... .++.+++.+.+. .+++.+++|+|++|++++++++.+++++++. .++|||
T Consensus 232 ~vDilf~Ne~Ea~~l~~~~~--~~~~~~~~~~l~-------~~~~~vvvT~G~~Ga~~~~~~~~~~v~a~~~--~~vVDT 300 (367)
T PLN02379 232 KIDLCFANEDEARELLRGEQ--ESDPEAALEFLA-------KYCNWAVVTLGSKGCIARHGKEVVRVPAIGE--TNAVDA 300 (367)
T ss_pred CccEEEcCHHHHHHHhcCCC--CCCHHHHHHHHH-------hcCCEEEEEECCCCeEEEECCEEEEecCCCC--CCcccC
Confidence 89999999999999885321 245667666663 3578999999999999999998888887643 379999
Q ss_pred CCCchhhhHHHHHHHhcCCCHHHHHHHhhHHhhhhhhhccCCCC
Q 022475 247 NGAGDAFVGGFLSQLVQEKPVEDCVRTGCYAANVVIQRSGCTYP 290 (296)
Q Consensus 247 tGaGDaf~ag~~~~l~~~~~~~~a~~~A~~~aa~~~~~~G~~~~ 290 (296)
|||||+|+|||+++|++|+++++|+++|+.+|+.++++.|++.+
T Consensus 301 tGAGDaFaagfl~gl~~G~~l~~a~~~g~~aAa~vi~~~G~~~~ 344 (367)
T PLN02379 301 TGAGDLFASGFLYGLIKGLSLEECCKVGACSGGSVVRALGGEVT 344 (367)
T ss_pred CChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHhccCCCCC
Confidence 99999999999999999999999999999999999999998643
No 8
>PRK11142 ribokinase; Provisional
Probab=100.00 E-value=3.8e-43 Score=304.96 Aligned_cols=265 Identities=22% Similarity=0.346 Sum_probs=219.1
Q ss_pred cCCCceeecCChhHHHHHHHHHhhcCCCcEEEEEeecCCchhHHHHHHHHhcCCceeEEe-cCCCCceeEEEEEe-CCee
Q 022475 7 SKENVEYIAGGATQNSIKVAQWMLQIPGATSYIGCIGKDKFGEEMKKNSTAAGVNVKYYE-DESAPTGTCAVCVV-GGER 84 (296)
Q Consensus 7 ~~~~~~~~~GG~~~n~a~~~~~l~~lg~~v~~~~~vG~D~~g~~i~~~l~~~gi~~~~~~-~~~~~t~~~~~~~~-~~~~ 84 (296)
+..+.+..+||++.|+|++|++ +|.++.++|.+|+|.+|+.+++.|+++||+++++. .++.+|+.+++.++ +|+|
T Consensus 30 ~~~~~~~~~GG~~~Nva~~la~---lG~~~~~~~~vG~D~~g~~i~~~L~~~gV~~~~i~~~~~~~t~~~~~~~~~~g~r 106 (306)
T PRK11142 30 TGRHYQVAFGGKGANQAVAAAR---LGADIAFIACVGDDSIGESMRQQLAKDGIDTAPVSVIKGESTGVALIFVNDEGEN 106 (306)
T ss_pred EeccceecCCCcHHHHHHHHHh---cCCcEEEEEEECCChhHHHHHHHHHHcCCChhhEEEcCCCCCCEEEEEECCCCCE
Confidence 3456678899999999999997 45999999999999999999999999999999985 67778999998887 7888
Q ss_pred ceeeccccccccCccccCChhhhhhhhcceEEEEeccccccChHHHHHHHHHHhhCCCEEEEeCCchhhhhhhhHHHHhh
Q 022475 85 SLVANLSAANCYKSEHLKRPEIWSIVEKAKYYYIAGFFLTVSPESIQMVAEHAAAKNKVFMMNLSAPFICEFFREPQEKA 164 (296)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 164 (296)
+++.+.++...++++.++. ..+.+.+++++|+++ ..+.+.+..+++.++++|+++++|+.... .....+
T Consensus 107 ~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~v~~~~---~~~~~~~~~~~~~a~~~g~~v~~d~~~~~------~~~~~~ 175 (306)
T PRK11142 107 SIGIHAGANAALTPALVEA--HRELIANADALLMQL---ETPLETVLAAAKIAKQHGTKVILNPAPAR------ELPDEL 175 (306)
T ss_pred EEEEeCCccccCCHHHHHH--HHhhhccCCEEEEeC---CCCHHHHHHHHHHHHHcCCEEEEECCCCc------ccCHHH
Confidence 8877777666666655432 234578999999975 33557788899999999999999985321 123467
Q ss_pred cCCCcEEEcCHHHHHHHHHHcCCCCCCHHHHHHHHhcCCCCCCCCceEEEEeeCCCcEEEEECCeEEEEecccCCCcccc
Q 022475 165 LPYMDYVFGNETEARTFAKVHGWETDNVEEIALKISQWPKASGTHKRITVITQGADPVVVAEDGKVKLFPVILLPKEKLV 244 (296)
Q Consensus 165 l~~~dv~~~n~~E~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~~~vv 244 (296)
++++|++++|++|++.+++....+.++..++++.+ ...|++.+|+|+|++|++++++++.+++|++++ +++
T Consensus 176 ~~~~dil~~n~~Ea~~l~g~~~~~~~~~~~~~~~l------~~~g~~~vvvt~G~~G~~~~~~~~~~~~~~~~v---~vv 246 (306)
T PRK11142 176 LALVDIITPNETEAEKLTGIRVEDDDDAAKAAQVL------HQKGIETVLITLGSRGVWLSENGEGQRVPGFRV---QAV 246 (306)
T ss_pred HhhCCEEcCCHHHHHHHhCCCCCChHHHHHHHHHH------HHhCCCeEEEEECCCcEEEEeCCcceeccCCCc---ccc
Confidence 88999999999999998864333334556667777 456789999999999999998888888877654 799
Q ss_pred CCCCCchhhhHHHHHHHhcCCCHHHHHHHhhHHhhhhhhhccCC--CCCCCC
Q 022475 245 DTNGAGDAFVGGFLSQLVQEKPVEDCVRTGCYAANVVIQRSGCT--YPPKPE 294 (296)
Q Consensus 245 d~tGaGDaf~ag~~~~l~~~~~~~~a~~~A~~~aa~~~~~~G~~--~~~~~~ 294 (296)
|||||||+|+|||++++++|+++++|+++|+++|+.++++.|+. .|+.++
T Consensus 247 Dt~GAGDaF~Agfi~~l~~g~~~~~al~~a~~~Aa~~~~~~G~~~~~~~~~~ 298 (306)
T PRK11142 247 DTIAAGDTFNGALVTALLEGKPLPEAIRFAHAAAAIAVTRKGAQPSIPWREE 298 (306)
T ss_pred cCCCchhHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCCcccccCCCHHH
Confidence 99999999999999999999999999999999999999999984 566554
No 9
>cd01174 ribokinase Ribokinase catalyses the phosphorylation of ribose to ribose-5-phosphate using ATP. This reaction is the first step in the ribose metabolism. It traps ribose within the cell after uptake and also prepares the sugar for use in the synthesis of nucleotides and histidine, and for entry into the pentose phosphate pathway. Ribokinase is dimeric in solution.
Probab=100.00 E-value=1.7e-42 Score=298.93 Aligned_cols=260 Identities=24% Similarity=0.368 Sum_probs=217.6
Q ss_pred hcCCCceeecCChhHHHHHHHHHhhcCCCcEEEEEeecCCchhHHHHHHHHhcCCceeEE-ecCCCCceeEEEEEe-CCe
Q 022475 6 ASKENVEYIAGGATQNSIKVAQWMLQIPGATSYIGCIGKDKFGEEMKKNSTAAGVNVKYY-EDESAPTGTCAVCVV-GGE 83 (296)
Q Consensus 6 ~~~~~~~~~~GG~~~n~a~~~~~l~~lg~~v~~~~~vG~D~~g~~i~~~l~~~gi~~~~~-~~~~~~t~~~~~~~~-~~~ 83 (296)
.+......++||++.|+|.++++ +|.++.++|.+|+|.+|+.+++.|+++||+++++ +.++.+|+.+++.++ +++
T Consensus 26 ~~~~~~~~~~GG~~~NvA~~l~~---lG~~~~~~~~vG~D~~g~~i~~~l~~~gi~~~~~~~~~~~~t~~~~~~~~~~g~ 102 (292)
T cd01174 26 VLGSSFETGPGGKGANQAVAAAR---LGARVAMIGAVGDDAFGDELLENLREEGIDVSYVEVVVGAPTGTAVITVDESGE 102 (292)
T ss_pred EEeccceecCCCcHHHHHHHHHH---cCCceEEEEEEcCCccHHHHHHHHHHcCCCceEEEEcCCCCceeEEEEEcCCCc
Confidence 34456678999999999999997 4599999999999999999999999999999998 567788999999988 688
Q ss_pred eceeeccccccccCccccCChhhhhhhhcceEEEEeccccccChHHHHHHHHHHhhCCCEEEEeCCchhhhhhhhHHHHh
Q 022475 84 RSLVANLSAANCYKSEHLKRPEIWSIVEKAKYYYIAGFFLTVSPESIQMVAEHAAAKNKVFMMNLSAPFICEFFREPQEK 163 (296)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 163 (296)
|+++.+.++...++++.++. ..+.+.+++++++++ ..+.+.+..+++.+++++.++++|+.... +..+.
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~v~~~~---~~~~~~~~~~~~~a~~~g~~v~~D~~~~~------~~~~~ 171 (292)
T cd01174 103 NRIVVVPGANGELTPADVDA--ALELIAAADVLLLQL---EIPLETVLAALRAARRAGVTVILNPAPAR------PLPAE 171 (292)
T ss_pred eEEEEeCCCCCCCCHHHHHH--HHHhcccCCEEEEeC---CCCHHHHHHHHHHHHhcCCEEEEeCCCcC------cCcHH
Confidence 88877766655555554432 345678999999986 44567888899999999999999986432 22357
Q ss_pred hcCCCcEEEcCHHHHHHHHHHcCCCCCCHHHHHHHHhcCCCCCCCCceEEEEeeCCCcEEEEECCeEEEEecccCCCccc
Q 022475 164 ALPYMDYVFGNETEARTFAKVHGWETDNVEEIALKISQWPKASGTHKRITVITQGADPVVVAEDGKVKLFPVILLPKEKL 243 (296)
Q Consensus 164 ~l~~~dv~~~n~~E~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~~~v 243 (296)
+++++|++++|++|++.+++....+.++.+++++.+ ...|++.+++|+|++|++++++++.+++|+++. ++
T Consensus 172 ~~~~~dil~~n~~E~~~l~~~~~~~~~~~~~~~~~l------~~~g~~~vvvt~G~~G~~~~~~~~~~~~~~~~~---~~ 242 (292)
T cd01174 172 LLALVDILVPNETEAALLTGIEVTDEEDAEKAARLL------LAKGVKNVIVTLGAKGALLASGGEVEHVPAFKV---KA 242 (292)
T ss_pred HHhhCCEEeeCHHHHHHHhCCCCCCHHHHHHHHHHH------HHcCCCEEEEEeCCCceEEEeCCceEEecCCCc---cc
Confidence 889999999999999999875443334556677777 456789999999999999999888888877654 89
Q ss_pred cCCCCCchhhhHHHHHHHhcCCCHHHHHHHhhHHhhhhhhhccCC
Q 022475 244 VDTNGAGDAFVGGFLSQLVQEKPVEDCVRTGCYAANVVIQRSGCT 288 (296)
Q Consensus 244 vd~tGaGDaf~ag~~~~l~~~~~~~~a~~~A~~~aa~~~~~~G~~ 288 (296)
+|||||||+|+|||++++++|+++++|+++|+++|+.++++.|+.
T Consensus 243 vdt~GaGD~F~ag~l~~l~~g~~~~~al~~a~~~Aa~~~~~~G~~ 287 (292)
T cd01174 243 VDTTGAGDTFIGALAAALARGLSLEEAIRFANAAAALSVTRPGAQ 287 (292)
T ss_pred CCCCCcHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcCCC
Confidence 999999999999999999999999999999999999999999984
No 10
>PTZ00292 ribokinase; Provisional
Probab=100.00 E-value=2.3e-42 Score=302.42 Aligned_cols=272 Identities=22% Similarity=0.278 Sum_probs=219.7
Q ss_pred hcCCCceeecCChhHHHHHHHHHhhcCCCcEEEEEeecCCchhHHHHHHHHhcCCceeEE-ecCCCCceeEEEEEe--CC
Q 022475 6 ASKENVEYIAGGATQNSIKVAQWMLQIPGATSYIGCIGKDKFGEEMKKNSTAAGVNVKYY-EDESAPTGTCAVCVV--GG 82 (296)
Q Consensus 6 ~~~~~~~~~~GG~~~n~a~~~~~l~~lg~~v~~~~~vG~D~~g~~i~~~l~~~gi~~~~~-~~~~~~t~~~~~~~~--~~ 82 (296)
.+.......+||.+.|+|+++++ +|.++.++|.||+|.+|+.+++.|+++||+++++ +.++.+|+.++++++ ++
T Consensus 42 ~~~~~~~~~~GG~~~NvA~~la~---lG~~~~~is~vG~D~~g~~i~~~l~~~GI~~~~~~~~~~~~t~~~~~~~~~~~g 118 (326)
T PTZ00292 42 LHGTSFHKGFGGKGANQAVMASK---LGAKVAMVGMVGTDGFGSDTIKNFKRNGVNTSFVSRTENSSTGLAMIFVDTKTG 118 (326)
T ss_pred eeecCceeCCCCcHHHHHHHHHH---cCCCeEEEEEECCChhHHHHHHHHHHcCCChhhEEEcCCCCCcEEEEEEeCCCC
Confidence 34455678899999999999997 5599999999999999999999999999999998 567788999999887 57
Q ss_pred eeceeeccccccccCccccCChhhhhhhhc-ceEEEEeccccccChHHHHHHHHHHhhCCCEEEEeCCchhhhhhhhHHH
Q 022475 83 ERSLVANLSAANCYKSEHLKRPEIWSIVEK-AKYYYIAGFFLTVSPESIQMVAEHAAAKNKVFMMNLSAPFICEFFREPQ 161 (296)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 161 (296)
+|+++.+.+++..++++.+.. ....+.. ++++++++ ..+.+...++++.+++.|+++++|+.... .....+.+
T Consensus 119 ~~~~~~~~g~~~~~~~~~~~~--~~~~i~~~~~~~~~~~---~~~~~~~~~~~~~a~~~g~~v~~D~~~~~-~~~~~~~~ 192 (326)
T PTZ00292 119 NNEIVIIPGANNALTPQMVDA--QTDNIQNICKYLICQN---EIPLETTLDALKEAKERGCYTVFNPAPAP-KLAEVEII 192 (326)
T ss_pred ceEEEEeCCccccCCHHHHHH--HHHHhhhhCCEEEECC---CCCHHHHHHHHHHHHHcCCEEEEECCCCc-cccccccH
Confidence 888777777666666665543 2334666 89999874 34567778889999999999999986432 11123567
Q ss_pred HhhcCCCcEEEcCHHHHHHHHHHcCCCCCCHHHHHHHHhcCCCCCCCCceEEEEeeCCCcEEEEECCe-EEEEecccCCC
Q 022475 162 EKALPYMDYVFGNETEARTFAKVHGWETDNVEEIALKISQWPKASGTHKRITVITQGADPVVVAEDGK-VKLFPVILLPK 240 (296)
Q Consensus 162 ~~~l~~~dv~~~n~~E~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~vvvt~G~~G~~~~~~~~-~~~~~~~~~~~ 240 (296)
+.+++++|++++|++|++.+++....+.++..++.+.+ ...+++.+|+|+|++|+++++++. .+++|++++
T Consensus 193 ~~~l~~~dii~~n~~E~~~l~g~~~~~~~~~~~~~~~l------~~~g~~~vvvT~G~~Ga~~~~~~~~~~~~~~~~~-- 264 (326)
T PTZ00292 193 KPFLKYVSLFCVNEVEAALITGMEVTDTESAFKASKEL------QQLGVENVIITLGANGCLIVEKENEPVHVPGKRV-- 264 (326)
T ss_pred HHHHhcCCEEcCCHHHHHHHhCCCCCChhHHHHHHHHH------HHcCCCeEEEEeCCCcEEEEeCCCceEEccCCcc--
Confidence 88999999999999999999864322233445666666 356788999999999999988765 477776654
Q ss_pred ccccCCCCCchhhhHHHHHHHhcCCCHHHHHHHhhHHhhhhhhhccCC--CCCCCCC
Q 022475 241 EKLVDTNGAGDAFVGGFLSQLVQEKPVEDCVRTGCYAANVVIQRSGCT--YPPKPEF 295 (296)
Q Consensus 241 ~~vvd~tGaGDaf~ag~~~~l~~~~~~~~a~~~A~~~aa~~~~~~G~~--~~~~~~~ 295 (296)
+++|||||||+|+|||++++++|+++++|+++|+++|+.++++.|+. +|+.+++
T Consensus 265 -~vvDttGAGDaF~ag~l~~l~~g~~~~~al~~a~a~Aa~~v~~~G~~~~~~~~~~~ 320 (326)
T PTZ00292 265 -KAVDTTGAGDCFVGSMAYFMSRGKDLKESCKRANRIAAISVTRHGTQSSYPHPSEL 320 (326)
T ss_pred -ccCCCcchHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCCCccccCCCHHHH
Confidence 89999999999999999999999999999999999999999999984 5766543
No 11
>PLN02967 kinase
Probab=100.00 E-value=1.2e-41 Score=309.10 Aligned_cols=277 Identities=14% Similarity=0.184 Sum_probs=215.8
Q ss_pred hcCCCceeecCChhHHHHHHHHHhhcCCCcEEEEEeecCCchhHHHHHHHHhcCCceeEEe-cCCCCceeEEEEEe-CCe
Q 022475 6 ASKENVEYIAGGATQNSIKVAQWMLQIPGATSYIGCIGKDKFGEEMKKNSTAAGVNVKYYE-DESAPTGTCAVCVV-GGE 83 (296)
Q Consensus 6 ~~~~~~~~~~GG~~~n~a~~~~~l~~lg~~v~~~~~vG~D~~g~~i~~~l~~~gi~~~~~~-~~~~~t~~~~~~~~-~~~ 83 (296)
.++..+...+||++.|+|.++++ ||.++.|+|.||+|.+|+.+++.|+++||+++++. .++.+|+.+++.++ +|+
T Consensus 233 s~~~~~~~~~GGa~aNVAvaLAR---LG~~v~fIg~VGdD~~G~~ll~~L~~~GVDts~v~~~~~~~Tgla~V~vd~~Ge 309 (581)
T PLN02967 233 WAPEKFVRAPGGSAGGVAIALAS---LGGKVAFMGKLGDDDYGQAMLYYLNVNKVQTRSVCIDGKRATAVSTMKIAKRGR 309 (581)
T ss_pred cCccceeeecCcHHHHHHHHHHH---CCCCEEEEEEeCCCHHHHHHHHHHHHcCCcccceEecCCCCCcEEEEEECCCCc
Confidence 35667888999999999999997 56999999999999999999999999999999985 66778999999997 678
Q ss_pred ecee-eccccccccCccccCChhhhhhhhcceEEEEeccccc--cChHHHHHHHHHHhhCCCEEEEeC--Cchhhh--hh
Q 022475 84 RSLV-ANLSAANCYKSEHLKRPEIWSIVEKAKYYYIAGFFLT--VSPESIQMVAEHAAAKNKVFMMNL--SAPFIC--EF 156 (296)
Q Consensus 84 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~--~~~~~~~~~~~~~~~~~~~~~~d~--~~~~~~--~~ 156 (296)
++++ ...+++..+.++++.. ..+..++++|++++.+. ...+.+..+++.+++.|++++||+ +.+.|. ..
T Consensus 310 rr~~~~~~gAd~~L~~~di~~----~~l~~A~i~hfgg~~ll~e~~~~all~alk~Ak~~Gv~VsFDpNlR~~lw~~~e~ 385 (581)
T PLN02967 310 LKTTCVKPCAEDSLSKSEINI----DVLKEAKMFYFNTHSLLDPTMRSTTLRAIKISKKLGGVIFYDLNLPLPLWSSSEE 385 (581)
T ss_pred eEEEEecCChhhhCChhhcCH----hHhcCCCEEEEeCchhcccchHHHHHHHHHHHHHCCCEEEEECCCCcccccchHH
Confidence 7764 4667777777776653 45788999999986531 223678889999999999988886 445553 23
Q ss_pred hhHHHHhhcCCCcEEEcCHHHHHHHHHHcCCCCC------------CHHHHHHHHhcCCCCCCCCceEEEEeeCCCcEEE
Q 022475 157 FREPQEKALPYMDYVFGNETEARTFAKVHGWETD------------NVEEIALKISQWPKASGTHKRITVITQGADPVVV 224 (296)
Q Consensus 157 ~~~~~~~~l~~~dv~~~n~~E~~~l~~~~~~~~~------------~~~~~~~~l~~~~~~~~~g~~~vvvt~G~~G~~~ 224 (296)
..+.+..+++++|++++|++|+..|++....... ...+.+..+ ...+++.|+||+|++|+++
T Consensus 386 ~~e~i~elL~~aDILk~NeeEl~~LtG~~~~~e~~~~~~~~~~~~~~~~e~a~~l------~~~g~k~VVVTlG~~Ga~~ 459 (581)
T PLN02967 386 TKSFIQEAWNLADIIEVTKQELEFLCGIEPTEEFDTKDNDKSKFVHYSPEVVAPL------WHENLKVLFVTNGTSKIHY 459 (581)
T ss_pred HHHHHHHHHHhCCEEEECHHHHHHHhCCCccccccccccchhccccchHHHHHHH------HhCCCCEEEEEECccceEE
Confidence 4566888999999999999999999863210000 011234444 2457889999999999999
Q ss_pred EECCeEEEEecccCCCcc--ccCCCCCchhhhHHHHHHHhcC-------CCHHHHHHHhhHHhhhhhhhccC--CCCCCC
Q 022475 225 AEDGKVKLFPVILLPKEK--LVDTNGAGDAFVGGFLSQLVQE-------KPVEDCVRTGCYAANVVIQRSGC--TYPPKP 293 (296)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~--vvd~tGaGDaf~ag~~~~l~~~-------~~~~~a~~~A~~~aa~~~~~~G~--~~~~~~ 293 (296)
+++++..+++.++..+++ +||||||||+|+|||+++|+++ +++++|+++|+++||++++..|+ .+|+++
T Consensus 460 ~~~~~~~~v~~~~a~~V~V~vVDTTGAGDAF~AGfL~~Ll~g~~~~~g~~~LeeaLrfAnAaAAL~vt~~GA~~glPt~~ 539 (581)
T PLN02967 460 YTKEHNGAVHGMEDAPITPFTSDMSASGDGIVAGLMRMLTVQPHLITDKGYLEKTIKYAIDCGVIDQWLLARTRGFPPKE 539 (581)
T ss_pred EECCCceeEeeccCCCCCCCCCCCCchhHHHHHHHHHHHHhccCcccccccHHHHHHHHHHHHHHHhccCCCccCCCCHH
Confidence 987653333332222224 5999999999999999999984 67999999999999999999999 567655
Q ss_pred CC
Q 022475 294 EF 295 (296)
Q Consensus 294 ~~ 295 (296)
++
T Consensus 540 eV 541 (581)
T PLN02967 540 DM 541 (581)
T ss_pred HH
Confidence 43
No 12
>TIGR02152 D_ribokin_bact ribokinase. This model describes ribokinase, an enzyme catalyzing the first step in ribose catabolism. The rbsK gene encoding ribokinase typically is found with ribose transport genes. Ribokinase belongs to the carbohydrate kinase pfkB family (pfam00294). In the wide gulf between the current trusted (360 bit) and noise (100 bit) cutoffs are a number of sequences, few of which are clustered with predicted ribose transport genes but many of which are currently annotated as if having ribokinase activity. Most likely some have this function and others do not.
Probab=100.00 E-value=2.7e-41 Score=291.55 Aligned_cols=270 Identities=25% Similarity=0.381 Sum_probs=223.3
Q ss_pred hhhcCCCceeecCChhHHHHHHHHHhhcCCCcEEEEEeecCCchhHHHHHHHHhcCCceeEEe-cCCCCceeEEEEEe-C
Q 022475 4 ELASKENVEYIAGGATQNSIKVAQWMLQIPGATSYIGCIGKDKFGEEMKKNSTAAGVNVKYYE-DESAPTGTCAVCVV-G 81 (296)
Q Consensus 4 ~~~~~~~~~~~~GG~~~n~a~~~~~l~~lg~~v~~~~~vG~D~~g~~i~~~l~~~gi~~~~~~-~~~~~t~~~~~~~~-~ 81 (296)
+..+..+...++||++.|+|+++++ +|.++.++|.+|+|.+|+.+++.|+++||++++++ .++.+|+.++++++ +
T Consensus 19 ~~~~~~~~~~~~GG~~~Nva~~l~~---lg~~~~~~~~vG~D~~g~~i~~~l~~~gi~~~~~~~~~~~~t~~~~~~~~~~ 95 (293)
T TIGR02152 19 ETVHGHSFQIGPGGKGANQAVAAAR---LGAEVSMIGKVGDDAFGDELLENLKSNGIDTEYVGTVKDTPTGTAFITVDDT 95 (293)
T ss_pred CcEecCCceecCCCcHHHHHHHHHH---CCCCEEEEEEecCCccHHHHHHHHHHcCCCeeEEEEcCCCCCceEEEEEcCC
Confidence 3455667789999999999999997 45999999999999999999999999999999996 55678999999987 5
Q ss_pred CeeceeeccccccccCccccCChhhhhhhhcceEEEEeccccccChHHHHHHHHHHhhCCCEEEEeCCchhhhhhhhHHH
Q 022475 82 GERSLVANLSAANCYKSEHLKRPEIWSIVEKAKYYYIAGFFLTVSPESIQMVAEHAAAKNKVFMMNLSAPFICEFFREPQ 161 (296)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 161 (296)
++|+++.+.+....++++.+.. ..+.+..+|++++++ ..+.+.+..+++.+++.++++++|+.... ....
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~v~~D~~~~~-----~~~~ 165 (293)
T TIGR02152 96 GENRIVVVAGANAELTPEDIDA--AEALIAESDIVLLQL---EIPLETVLEAAKIAKKHGVKVILNPAPAI-----KDLD 165 (293)
T ss_pred CCEEEEEECCcCCcCCHHHHHH--HHhhhccCCEEEEec---CCCHHHHHHHHHHHHHcCCEEEEECCcCc-----ccch
Confidence 8888776666555566555542 334578899999974 44567888899999999999999986431 1113
Q ss_pred HhhcCCCcEEEcCHHHHHHHHHHcCCCCCCHHHHHHHHhcCCCCCCCCceEEEEeeCCCcEEEEECCeEEEEecccCCCc
Q 022475 162 EKALPYMDYVFGNETEARTFAKVHGWETDNVEEIALKISQWPKASGTHKRITVITQGADPVVVAEDGKVKLFPVILLPKE 241 (296)
Q Consensus 162 ~~~l~~~dv~~~n~~E~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~~ 241 (296)
..+++++|++++|.+|++.+++....+.++.+++++.+. ..|++.+++|+|++|++++++++.++++++++
T Consensus 166 ~~~~~~~d~l~~n~~E~~~l~~~~~~~~~~~~~~~~~l~------~~g~~~vvvt~G~~g~~~~~~~~~~~~~~~~~--- 236 (293)
T TIGR02152 166 DELLSLVDIITPNETEAEILTGIEVTDEEDAEKAAEKLL------EKGVKNVIITLGSKGALLVSKDESKLIPAFKV--- 236 (293)
T ss_pred HHHHhcCCEEccCHHHHHHHhCCCCCCcchHHHHHHHHH------HcCCCeEEEEeCCCceEEEeCCceeEccCCCC---
Confidence 577899999999999999998654334456777778774 56789999999999999999988888776554
Q ss_pred cccCCCCCchhhhHHHHHHHhcCCCHHHHHHHhhHHhhhhhhhccCC--CCCCCCC
Q 022475 242 KLVDTNGAGDAFVGGFLSQLVQEKPVEDCVRTGCYAANVVIQRSGCT--YPPKPEF 295 (296)
Q Consensus 242 ~vvd~tGaGDaf~ag~~~~l~~~~~~~~a~~~A~~~aa~~~~~~G~~--~~~~~~~ 295 (296)
+++||+||||+|+|||++++++|+++++|+++|+.+|+.++++.|+. +|+++++
T Consensus 237 ~~vdt~GAGDaf~Ag~l~~l~~g~~~~~al~~a~~~Aa~~~~~~G~~~~~~~~~~~ 292 (293)
T TIGR02152 237 KAVDTTAAGDTFNGAFAVALAEGKSLEDAIRFANAAAAISVTRKGAQSSIPYLEEV 292 (293)
T ss_pred ceeCCCCcHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcccCcccCCCChHHc
Confidence 79999999999999999999999999999999999999999999995 4887775
No 13
>cd01166 KdgK 2-keto-3-deoxygluconate kinase (KdgK) phosphorylates 2-keto-3-deoxygluconate (KDG) to form 2-keto-3-deoxy-6-phosphogluconate (KDGP). KDG is the common intermediate product, that allows organisms to channel D-glucuronate and/or D-galacturinate into the glycolysis and therefore use polymers, like pectin and xylan as carbon sources.
Probab=100.00 E-value=1.8e-40 Score=286.61 Aligned_cols=262 Identities=27% Similarity=0.360 Sum_probs=211.6
Q ss_pred cCCCceeecCChhHHHHHHHHHhhcCCCcEEEEEeecCCchhHHHHHHHHhcCCceeEE-ecCCCCceeEEEEEe-CCee
Q 022475 7 SKENVEYIAGGATQNSIKVAQWMLQIPGATSYIGCIGKDKFGEEMKKNSTAAGVNVKYY-EDESAPTGTCAVCVV-GGER 84 (296)
Q Consensus 7 ~~~~~~~~~GG~~~n~a~~~~~l~~lg~~v~~~~~vG~D~~g~~i~~~l~~~gi~~~~~-~~~~~~t~~~~~~~~-~~~~ 84 (296)
...+....+||++.|+|+++++ +|.++.++|.+|+|.+|+.+.+.|++.||+++++ +.++.+|+.+++.++ +++|
T Consensus 22 ~~~~~~~~~GG~~~N~a~~la~---lg~~~~~i~~vG~D~~g~~i~~~l~~~gi~~~~~~~~~~~~t~~~~~~~~~~g~r 98 (294)
T cd01166 22 QADSFRKFFGGAEANVAVGLAR---LGHRVALVTAVGDDPFGRFILAELRREGVDTSHVRVDPGRPTGLYFLEIGAGGER 98 (294)
T ss_pred hhhccccccCChHHHHHHHHHh---cCCceEEEEecCCCHHHHHHHHHHHHcCCCCceEEEeCCCcceEEEEEecCCCCc
Confidence 3456778899999999999997 4599999999999999999999999999999998 467788999999887 4778
Q ss_pred ceeecc--ccccccCccccCChhhhhhhhcceEEEEeccccccCh---HHHHHHHHHHhhCCCEEEEeCCchhh---hhh
Q 022475 85 SLVANL--SAANCYKSEHLKRPEIWSIVEKAKYYYIAGFFLTVSP---ESIQMVAEHAAAKNKVFMMNLSAPFI---CEF 156 (296)
Q Consensus 85 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~---~~~~~~~~~~~~~~~~~~~d~~~~~~---~~~ 156 (296)
++..+. .+...++.+.+. ...+.++|++|++++.+...+ +.+..+++.+++.++++++|+..... ...
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~D~~~~~~~~~~~~ 174 (294)
T cd01166 99 RVLYYRAGSAASRLTPEDLD----EAALAGADHLHLSGITLALSESAREALLEALEAAKARGVTVSFDLNYRPKLWSAEE 174 (294)
T ss_pred eEEEeCCCChhHhCChhhCC----HHHHhCCCEEEEcCcchhhCHHHHHHHHHHHHHHHHcCCEEEECCCCcchhcChHH
Confidence 766553 233445555544 245789999999987654433 67788899999999999999864321 112
Q ss_pred hhHHHHhhcCCCcEEEcCHHHHHHHHHHcCCCCCCHHHHHHHHhcCCCCCCCCceEEEEeeCCCcEEEEECCeEEEEecc
Q 022475 157 FREPQEKALPYMDYVFGNETEARTFAKVHGWETDNVEEIALKISQWPKASGTHKRITVITQGADPVVVAEDGKVKLFPVI 236 (296)
Q Consensus 157 ~~~~~~~~l~~~dv~~~n~~E~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~vvvt~G~~G~~~~~~~~~~~~~~~ 236 (296)
..+.++.+++++|++++|..|++.+++.. ...++.+.++++ ..|++.+++|+|++|++++++++.+++|++
T Consensus 175 ~~~~~~~~~~~~dil~~n~~E~~~l~~~~-----~~~~~~~~~~~l----~~g~~~viit~G~~G~~~~~~~~~~~~~~~ 245 (294)
T cd01166 175 AREALEELLPYVDIVLPSEEEAEALLGDE-----DPTDAAERALAL----ALGVKAVVVKLGAEGALVYTGGGRVFVPAY 245 (294)
T ss_pred HHHHHHHHHHhCCEEEcCHHHHHHHhCCC-----CchhHHHHHHhh----cCCccEEEEEEcCCceEEEECCceEEeCCC
Confidence 34556788999999999999999987532 233444444321 357889999999999999999888888876
Q ss_pred cCCCccccCCCCCchhhhHHHHHHHhcCCCHHHHHHHhhHHhhhhhhhccC
Q 022475 237 LLPKEKLVDTNGAGDAFVGGFLSQLVQEKPVEDCVRTGCYAANVVIQRSGC 287 (296)
Q Consensus 237 ~~~~~~vvd~tGaGDaf~ag~~~~l~~~~~~~~a~~~A~~~aa~~~~~~G~ 287 (296)
++ +++|||||||+|+|||+++|++|+++++|+++|+++|+.++++.|+
T Consensus 246 ~~---~~vdt~GAGD~f~a~~~~~l~~g~~~~~a~~~a~~~aa~~i~~~G~ 293 (294)
T cd01166 246 PV---EVVDTTGAGDAFAAGFLAGLLEGWDLEEALRFANAAAALVVTRPGD 293 (294)
T ss_pred Cc---ccccCCCchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCCC
Confidence 55 7899999999999999999999999999999999999999999986
No 14
>TIGR03828 pfkB 1-phosphofructokinase. This enzyme acts in concert with the fructose-specific phosphotransferase system (PTS) which imports fructose as fructose-1-phosphate. The action of 1-phosphofructokinase results in beta-D-fructose-1,6-bisphosphate and is an entry point into glycolysis (GenProp0688).
Probab=100.00 E-value=1e-40 Score=289.47 Aligned_cols=270 Identities=17% Similarity=0.192 Sum_probs=212.1
Q ss_pred HhhhcCCCceeecCChhHHHHHHHHHhhcCCCcEEEEEeecCCchhHHHHHHHHhcCCceeEEecCCCCceeEEEEEe-C
Q 022475 3 DELASKENVEYIAGGATQNSIKVAQWMLQIPGATSYIGCIGKDKFGEEMKKNSTAAGVNVKYYEDESAPTGTCAVCVV-G 81 (296)
Q Consensus 3 ~~~~~~~~~~~~~GG~~~n~a~~~~~l~~lg~~v~~~~~vG~D~~g~~i~~~l~~~gi~~~~~~~~~~~t~~~~~~~~-~ 81 (296)
++..+..+...++||++.|+|+++++ +|.+|.++|.||+| +|+.+++.|++.||++++++.. ..|+.++++++ +
T Consensus 22 g~~~~~~~~~~~~GG~~~NvA~~la~---lG~~v~~is~vG~D-~g~~~~~~L~~~gId~~~~~~~-~~t~~~~~~~~~~ 96 (304)
T TIGR03828 22 GEVNRVESTRIDAGGKGINVSRVLKN---LGVDVVALGFLGGF-TGDFIEALLREEGIKTDFVRVP-GETRINVKIKEPS 96 (304)
T ss_pred CceeecccccccCCccHHHHHHHHHH---cCCCeEEEEEecCc-hhHHHHHHHHHCCCcceEEECC-CCCeeeEEEEeCC
Confidence 34556677889999999999999997 45999999999999 6999999999999999998654 35777777776 6
Q ss_pred CeeceeeccccccccCccccCC--hhhhhhhhcceEEEEecccc-ccChHHHHHHHHHHhhCCCEEEEeCCchhhhhhhh
Q 022475 82 GERSLVANLSAANCYKSEHLKR--PEIWSIVEKAKYYYIAGFFL-TVSPESIQMVAEHAAAKNKVFMMNLSAPFICEFFR 158 (296)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~i~g~~~-~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 158 (296)
|+++.+...+. .++.+.+.. ..+.+.+.+++++|++++.. ..+++.+..+++.+++.+.++++|+.....
T Consensus 97 g~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~v~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~~D~~~~~~----- 169 (304)
T TIGR03828 97 GTETKLNGPGP--EISEEELEALLEKLRAQLAEGDWLVLSGSLPPGVPPDFYAELIALAREKGAKVILDTSGEAL----- 169 (304)
T ss_pred CCEEEEECCCC--CCCHHHHHHHHHHHHHhccCCCEEEEECCCCCCCCHHHHHHHHHHHHHcCCEEEEECChHHH-----
Confidence 76666654432 233333322 11123577899999998764 356678889999999999999999864321
Q ss_pred HHHHhhcCCCcEEEcCHHHHHHHHHHcCCCCCCHHHHHHHHhcCCCCCCCCceEEEEeeCCCcEEEEECCeEEEEecccC
Q 022475 159 EPQEKALPYMDYVFGNETEARTFAKVHGWETDNVEEIALKISQWPKASGTHKRITVITQGADPVVVAEDGKVKLFPVILL 238 (296)
Q Consensus 159 ~~~~~~l~~~dv~~~n~~E~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~vvvt~G~~G~~~~~~~~~~~~~~~~~ 238 (296)
.+.+...+|++++|++|++.+++....+.++..++++.+ ...|.+.+|+|+|++|++++++++.++++++++
T Consensus 170 --~~~~~~~~~i~~~n~~E~~~l~g~~~~~~~~~~~~~~~l------~~~g~~~vvvT~G~~G~~~~~~~~~~~~~~~~~ 241 (304)
T TIGR03828 170 --RDGLKAKPFLIKPNDEELEELFGRELKTLEEIIEAAREL------LDLGAENVLISLGADGALLVTKEGALFAQPPKG 241 (304)
T ss_pred --HHHHhcCCcEECcCHHHHHHHhCCCCCCHHHHHHHHHHH------HHcCCCEEEEccCCCCcEEEcCCceEEEeCCCc
Confidence 112234578999999999999865332334455666666 356788999999999999998888788776544
Q ss_pred CCccccCCCCCchhhhHHHHHHHhcCCCHHHHHHHhhHHhhhhhhhccCCCCCCCCC
Q 022475 239 PKEKLVDTNGAGDAFVGGFLSQLVQEKPVEDCVRTGCYAANVVIQRSGCTYPPKPEF 295 (296)
Q Consensus 239 ~~~~vvd~tGaGDaf~ag~~~~l~~~~~~~~a~~~A~~~aa~~~~~~G~~~~~~~~~ 295 (296)
+++|||||||+|+|||+++|++|+++++|+++|+++|+.++++.|+..|+++++
T Consensus 242 ---~vvDttGAGDaF~a~~l~~l~~g~~~~~a~~~a~~~Aa~~~~~~G~~~p~~~~~ 295 (304)
T TIGR03828 242 ---EVVSTVGAGDSMVAGFLAGLESGLSLEEALRLAVAAGSAAAFSEGTGLPDPEDI 295 (304)
T ss_pred ---cccCCcChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcCCCCCCHHHH
Confidence 799999999999999999999999999999999999999999999988877654
No 15
>cd01944 YegV_kinase_like YegV-like sugar kinase. Found only in bacteria, YegV-like kinase is part of the ribokinase/pfkB sugar kinase superfamily. Its oligomerization state is unknown at this time.
Probab=100.00 E-value=2.1e-40 Score=285.40 Aligned_cols=259 Identities=22% Similarity=0.314 Sum_probs=204.5
Q ss_pred hcCCCceeecCChhHHHHHHHHHhhcCCCcEEEEEeecCCchhHHHHHHHHhcCCceeEEecCCCCceeEEEEEe-CCee
Q 022475 6 ASKENVEYIAGGATQNSIKVAQWMLQIPGATSYIGCIGKDKFGEEMKKNSTAAGVNVKYYEDESAPTGTCAVCVV-GGER 84 (296)
Q Consensus 6 ~~~~~~~~~~GG~~~n~a~~~~~l~~lg~~v~~~~~vG~D~~g~~i~~~l~~~gi~~~~~~~~~~~t~~~~~~~~-~~~~ 84 (296)
.+.+.....+|| +.|+|+++++ +|.++.++|.+|+|.+|+.+++.|++.||+++++...+.+|+.++++++ +|+|
T Consensus 26 ~~~~~~~~~~GG-~~Nva~~l~~---lG~~~~~~~~vG~D~~g~~i~~~l~~~gi~~~~~~~~~~~t~~~~~~~~~~g~r 101 (289)
T cd01944 26 IEAKSKSYVIGG-GFNVMVAASR---LGIPTVNAGPLGNGNWADQIRQAMRDEGIEILLPPRGGDDGGCLVALVEPDGER 101 (289)
T ss_pred cccceeeeccCc-HHHHHHHHHH---cCCCeEEEEEecCChHHHHHHHHHHHcCCccccccccCCCCeEEEEEEcCCCce
Confidence 344567889999 9999999997 4599999999999999999999999999999988766677888777777 7899
Q ss_pred ceeeccccccccCccccCChhhhhhhhcceEEEEeccccccC---hHHHHHHHHHHhhCCCEEEEeCCchhhhhhhhHHH
Q 022475 85 SLVANLSAANCYKSEHLKRPEIWSIVEKAKYYYIAGFFLTVS---PESIQMVAEHAAAKNKVFMMNLSAPFICEFFREPQ 161 (296)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~---~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 161 (296)
+++.+.+++..++++.++. ..+.+++++|++++.+... .+.+..+++.++ .+.++++|+.... .....+.+
T Consensus 102 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~D~~~~~-~~~~~~~~ 175 (289)
T cd01944 102 SFISISGAEQDWSTEWFAT----LTVAPYDYVYLSGYTLASENASKVILLEWLEALP-AGTTLVFDPGPRI-SDIPDTIL 175 (289)
T ss_pred EEEEeCCccCCCCHHHhcc----ccCCCCCEEEEeCccccCcchhHHHHHHHHHhcc-CCCEEEEcCcccc-cccCHHHH
Confidence 8887777666666665543 1367899999999764322 345556666543 5688999985322 11224567
Q ss_pred HhhcCCCcEEEcCHHHHHHHHHHcCCCCCCHHHHHHHHhcCCCCCCCCceEEEEeeCCCcEEEEE-CCeEEEEecccCCC
Q 022475 162 EKALPYMDYVFGNETEARTFAKVHGWETDNVEEIALKISQWPKASGTHKRITVITQGADPVVVAE-DGKVKLFPVILLPK 240 (296)
Q Consensus 162 ~~~l~~~dv~~~n~~E~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~vvvt~G~~G~~~~~-~~~~~~~~~~~~~~ 240 (296)
+++++++|++++|++|++.+++.. ..+...+++.+ ...+++.+++|+|++|++++. +++.+++|++++
T Consensus 176 ~~~l~~~d~~~~n~~E~~~l~g~~---~~~~~~~~~~~------~~~~~~~vvvt~G~~Ga~~~~~~~~~~~~~~~~~-- 244 (289)
T cd01944 176 QALMAKRPIWSCNREEAAIFAERG---DPAAEASALRI------YAKTAAPVVVRLGSNGAWIRLPDGNTHIIPGFKV-- 244 (289)
T ss_pred HHHHhcCCEEccCHHHHHHHhCCC---CcchHHHHHHH------HhccCCeEEEEECCCcEEEEecCCCeEEecCCCC--
Confidence 889999999999999999998632 11222334555 355678899999999999988 556677776554
Q ss_pred ccccCCCCCchhhhHHHHHHHhcCCCHHHHHHHhhHHhhhhhhhcc
Q 022475 241 EKLVDTNGAGDAFVGGFLSQLVQEKPVEDCVRTGCYAANVVIQRSG 286 (296)
Q Consensus 241 ~~vvd~tGaGDaf~ag~~~~l~~~~~~~~a~~~A~~~aa~~~~~~G 286 (296)
+++|||||||+|+|||++++++|+++++|+++|+++|+.++++.|
T Consensus 245 -~vvDt~GAGDaf~ag~l~~~~~g~~~~~a~~~a~a~aa~~~~~~G 289 (289)
T cd01944 245 -KAVDTIGAGDTHAGGMLAGLAKGMSLADAVLLANAAAAIVVTRSG 289 (289)
T ss_pred -CCccCCCchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhhccCC
Confidence 899999999999999999999999999999999999999999876
No 16
>PLN02341 pfkB-type carbohydrate kinase family protein
Probab=100.00 E-value=2.7e-40 Score=300.24 Aligned_cols=269 Identities=17% Similarity=0.217 Sum_probs=211.7
Q ss_pred ceeecCChhHHHHHHHHHhhcCCCcEEEEEeecCCchhHHHHHHHHhcCCceeEEe-cC--------CCCceeEEEEEe-
Q 022475 11 VEYIAGGATQNSIKVAQWMLQIPGATSYIGCIGKDKFGEEMKKNSTAAGVNVKYYE-DE--------SAPTGTCAVCVV- 80 (296)
Q Consensus 11 ~~~~~GG~~~n~a~~~~~l~~lg~~v~~~~~vG~D~~g~~i~~~l~~~gi~~~~~~-~~--------~~~t~~~~~~~~- 80 (296)
....+|| +.|+|+++++ ||.++.++|.||+|.+|+.+++.|+++||+++++. .+ +.+|+.++++++
T Consensus 115 ~~~~~GG-~~NvAvaLar---LG~~v~lig~VG~D~~G~~i~~~L~~~GVd~~~v~~~~~~~~~~~~~~~T~~~~vlvd~ 190 (470)
T PLN02341 115 KSWEAGG-NCNFAIAAAR---LGLRCSTIGHVGDEIYGKFLLDVLAEEGISVVGLIEGTDAGDSSSASYETLLCWVLVDP 190 (470)
T ss_pred ceecCCh-HHHHHHHHHH---cCCCeEEEEEecCcHHHHHHHHHHHHcCCeeeEEEecCccccccccCCCceeEEEEEcC
Confidence 4455788 7899999997 45999999999999999999999999999999985 33 356999999988
Q ss_pred CCeeceeeccccccccCccccCC--hhhhhhhhcceEEEEecccc-ccChHHHHHHHHHHhhCCCEEEEeCCch---hhh
Q 022475 81 GGERSLVANLSAANCYKSEHLKR--PEIWSIVEKAKYYYIAGFFL-TVSPESIQMVAEHAAAKNKVFMMNLSAP---FIC 154 (296)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~i~g~~~-~~~~~~~~~~~~~~~~~~~~~~~d~~~~---~~~ 154 (296)
++++.+............+.+.. .+..+.+.++|++|++++.. ..+++.+..+++.+++.|+++++|+... .|.
T Consensus 191 ~ger~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~adiv~lsg~~~~~~~~~~~~~~~~~Ak~~g~~V~~Dp~~~~~~~~~ 270 (470)
T PLN02341 191 LQRHGFCSRADFGPEPAFSWISKLSAEAKMAIRQSKALFCNGYVFDELSPSAIASAVDYAIDVGTAVFFDPGPRGKSLLV 270 (470)
T ss_pred CCCceeeeccccccccchhhhhcccHHHHhhhhcCCEEEEeceeCCcCCHHHHHHHHHHHHHcCCEEEEeCCCccccccc
Confidence 67765443222111111111111 22345678999999999864 4567888999999999999999998542 111
Q ss_pred --hhhhHHHHhhcCCCcEEEcCHHHHHHHHHHcCCCCCCHHHHHHHHhcCCCCCCCCceEEEEeeCCCcEEEEECCeEEE
Q 022475 155 --EFFREPQEKALPYMDYVFGNETEARTFAKVHGWETDNVEEIALKISQWPKASGTHKRITVITQGADPVVVAEDGKVKL 232 (296)
Q Consensus 155 --~~~~~~~~~~l~~~dv~~~n~~E~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~vvvt~G~~G~~~~~~~~~~~ 232 (296)
+...+.++.+++++|++++|++|++.+++ .++++++++.+.+ .+.+.+.||||+|++|++++++++.++
T Consensus 271 ~~~~~~~~l~~~L~~~Dil~~Ne~Ea~~l~g-----~~~~~~a~~~l~~----~g~~~k~VVVTlG~~Ga~~~~~~~~~~ 341 (470)
T PLN02341 271 GTPDERRALEHLLRMSDVLLLTSEEAEALTG-----IRNPILAGQELLR----PGIRTKWVVVKMGSKGSILVTRSSVSC 341 (470)
T ss_pred ChHHHHHHHHHHHhhCCEEEecHHHHHHHhC-----CCCHHHHHHHHHh----cCCCCCEEEEeeCCCCeEEEECCeeEE
Confidence 11334578899999999999999999986 3567788877731 122357899999999999999998888
Q ss_pred EecccCCCccccCCCCCchhhhHHHHHHHhcCCCHHHHHHHhhHHhhhhhhhccC--CCCCCCCC
Q 022475 233 FPVILLPKEKLVDTNGAGDAFVGGFLSQLVQEKPVEDCVRTGCYAANVVIQRSGC--TYPPKPEF 295 (296)
Q Consensus 233 ~~~~~~~~~~vvd~tGaGDaf~ag~~~~l~~~~~~~~a~~~A~~~aa~~~~~~G~--~~~~~~~~ 295 (296)
+|++++ ++||||||||+|+|||++++++|+++++|+++|+++|+++++..|+ .+|+++++
T Consensus 342 vpa~~v---~vVDTtGAGDaF~Agfl~gll~G~~l~eal~~A~a~aA~~v~~~Ga~~~~p~~~ev 403 (470)
T PLN02341 342 APAFKV---NVVDTVGCGDSFAAAIALGYIHNLPLVNTLTLANAVGAATAMGCGAGRNVATLEKV 403 (470)
T ss_pred eCCCCc---CCCCCcCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCcCCCCCCCCHHHH
Confidence 887665 8999999999999999999999999999999999999999999997 56766543
No 17
>COG0524 RbsK Sugar kinases, ribokinase family [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.2e-40 Score=288.27 Aligned_cols=264 Identities=31% Similarity=0.419 Sum_probs=219.9
Q ss_pred ceeecCChhHHHHHHHHHhhcCCCcEEEEEeecCCchhHHHHHHHHhcCCceeEEe-cCCCCceeEEEEEe-CCeeceee
Q 022475 11 VEYIAGGATQNSIKVAQWMLQIPGATSYIGCIGKDKFGEEMKKNSTAAGVNVKYYE-DESAPTGTCAVCVV-GGERSLVA 88 (296)
Q Consensus 11 ~~~~~GG~~~n~a~~~~~l~~lg~~v~~~~~vG~D~~g~~i~~~l~~~gi~~~~~~-~~~~~t~~~~~~~~-~~~~~~~~ 88 (296)
.+..+||++.|+|+++++ +|.++.++|.||+|.+|+.+++.|++.||+++++. ....+|+.+++.++ +|+|.++.
T Consensus 32 ~~~~~GG~~~N~A~~~a~---lG~~~~~~~~vG~D~~g~~~~~~l~~~GVd~~~~~~~~~~~tg~~~i~~~~~g~r~~~~ 108 (311)
T COG0524 32 FKVAGGGKGANVAVALAR---LGAKVALIGAVGDDDFGEFLLEELRKEGVDTSHVVTDEGATTGLALILVDEDGERTFVF 108 (311)
T ss_pred eeecCCchHHHHHHHHHH---cCCceEEEEEecCcHHHHHHHHHHHHcCCccceEEEcCCCcceEEEEEEcCCCceeEEE
Confidence 577899999999999997 45899999999999999999999999999999985 55568999999987 68999988
Q ss_pred cccc-ccccCccccCChhhhhhhhcceEEEEeccccccChHHHHHHHHHHhhCCCEEEEeC--CchhhhhhhhHHHHhhc
Q 022475 89 NLSA-ANCYKSEHLKRPEIWSIVEKAKYYYIAGFFLTVSPESIQMVAEHAAAKNKVFMMNL--SAPFICEFFREPQEKAL 165 (296)
Q Consensus 89 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~--~~~~~~~~~~~~~~~~l 165 (296)
+.+. ...+.++.++. ..+...+++|++++.+..+++.+..+++.+++.|.++.+|+ +...|. .+.+.+++
T Consensus 109 ~~~~a~~~~~~~~~~~----~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~g~~v~~d~~~~~~~~~---~~~~~~~l 181 (311)
T COG0524 109 YRGAAALLLTPEDLDE----DELAGADVLHISGIQLEIPPEALLAALELAKAAGVTVSFDLNPRPALWD---RELLEELL 181 (311)
T ss_pred ECCcccccCChHHcCh----HHHhhcCeeeEEEeecCCChHHHHHHHHHHHHcCCeEEEecCCCccccc---hhhHHHHH
Confidence 8773 55566666653 45778999999998887777899999999999998855554 443332 57788999
Q ss_pred CCCcEEEcCHHHHHHHHHHcCCCCCCHHHHHHHHhcCCCCCCCCceEEEEeeCCCcEEEEECCeEEEEecccCCCccccC
Q 022475 166 PYMDYVFGNETEARTFAKVHGWETDNVEEIALKISQWPKASGTHKRITVITQGADPVVVAEDGKVKLFPVILLPKEKLVD 245 (296)
Q Consensus 166 ~~~dv~~~n~~E~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~~~vvd 245 (296)
+++|++++|++|++.+++. ..+..+....+ ...+++.+++|+|++|+++++.+...+++..+.+++++||
T Consensus 182 ~~~d~~~~n~~E~~~l~g~----~~~~~~~~~~~------~~~~~~~vvvt~G~~Ga~~~~~~~~~~~~~~~~~~~~vvD 251 (311)
T COG0524 182 ALADILFPNEEEAELLTGL----EEDAEAAAALL------LAKGVKTVVVTLGAEGAVVFTGGGEVTVPVPAAFKVKVVD 251 (311)
T ss_pred hhCCEEeCCHHHHHHHhCC----CccHHHHHHHH------hhcCCCEEEEEeCCCcEEEEeCCCceeeccCCCCcccccc
Confidence 9999999999999999863 23455555445 5678899999999999999988554555555556678999
Q ss_pred CCCCchhhhHHHHHHHhcCCCHHHHHHHhhHHhhhhhhhccCC--CCCCCC
Q 022475 246 TNGAGDAFVGGFLSQLVQEKPVEDCVRTGCYAANVVIQRSGCT--YPPKPE 294 (296)
Q Consensus 246 ~tGaGDaf~ag~~~~l~~~~~~~~a~~~A~~~aa~~~~~~G~~--~~~~~~ 294 (296)
||||||+|.|||++++++|+++++++++|+++|++++++.|+. .|..++
T Consensus 252 ttGAGDaF~agfl~~~~~g~~~~~a~~~a~a~aa~~~~~~g~~~~~p~~~~ 302 (311)
T COG0524 252 TTGAGDAFAAGFLAGLLEGKSLEEALRFANAAAALAVTRPGARPSLPTREE 302 (311)
T ss_pred CCCchHHHHHHHHHHHHcCCCHHHHHHHHHHHhhhhhccCCCCCCCCCHHH
Confidence 9999999999999999999999999999999999999999994 455443
No 18
>PLN02323 probable fructokinase
Probab=100.00 E-value=3.5e-40 Score=289.05 Aligned_cols=266 Identities=22% Similarity=0.282 Sum_probs=212.3
Q ss_pred CceeecCChhHHHHHHHHHhhcCCCcEEEEEeecCCchhHHHHHHHHhcCCceeEEe-cCCCCceeEEEEEe-CCeecee
Q 022475 10 NVEYIAGGATQNSIKVAQWMLQIPGATSYIGCIGKDKFGEEMKKNSTAAGVNVKYYE-DESAPTGTCAVCVV-GGERSLV 87 (296)
Q Consensus 10 ~~~~~~GG~~~n~a~~~~~l~~lg~~v~~~~~vG~D~~g~~i~~~l~~~gi~~~~~~-~~~~~t~~~~~~~~-~~~~~~~ 87 (296)
.....+||++.|+|.++++ +|.++.++|.||+|.+|+.+++.|++.||+++++. .++.+|+.+++.++ +|+|+++
T Consensus 37 ~~~~~~GG~~~NvA~~la~---LG~~~~~i~~vG~D~~g~~i~~~L~~~GI~~~~v~~~~~~~t~~~~i~~~~~g~r~~~ 113 (330)
T PLN02323 37 AFKKAPGGAPANVAVGISR---LGGSSAFIGKVGDDEFGHMLADILKKNGVNNEGVRFDPGARTALAFVTLRSDGEREFM 113 (330)
T ss_pred ceeecCCChHHHHHHHHHh---cCCceeEEEEecCChhHHHHHHHHHHcCCCCcceEEcCCCCceEEEEEECCCCceeEE
Confidence 4468899999999999997 45999999999999999999999999999999985 66678999998886 7888876
Q ss_pred ecc--ccccccCccccCChhhhhhhhcceEEEEeccccccC--hHHHHHHHHHHhhCCCEEEEeCCc--hhhh--hhhhH
Q 022475 88 ANL--SAANCYKSEHLKRPEIWSIVEKAKYYYIAGFFLTVS--PESIQMVAEHAAAKNKVFMMNLSA--PFIC--EFFRE 159 (296)
Q Consensus 88 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~--~~~~~~~~~~~~~~~~~~~~d~~~--~~~~--~~~~~ 159 (296)
.+. +++..++++++.. +.+..++++|++++..... ...+..+++.+++.|.++++|+.. ..|. ....+
T Consensus 114 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~~~~ 189 (330)
T PLN02323 114 FYRNPSADMLLRESELDL----DLIRKAKIFHYGSISLITEPCRSAHLAAMKIAKEAGALLSYDPNLRLPLWPSAEAARE 189 (330)
T ss_pred eecCCchhccCChHHCCh----HHHccCCEEEEechhccCchHHHHHHHHHHHHHHcCCEEEEcCCCChhhccCHHHHHH
Confidence 653 4444566666653 4577899999987653222 245667888899999999999853 2332 22456
Q ss_pred HHHhhcCCCcEEEcCHHHHHHHHHHcCCCCCCHHHHHHHHhcCCCCCCCCceEEEEeeCCCcEEEEECCeEEEEecccCC
Q 022475 160 PQEKALPYMDYVFGNETEARTFAKVHGWETDNVEEIALKISQWPKASGTHKRITVITQGADPVVVAEDGKVKLFPVILLP 239 (296)
Q Consensus 160 ~~~~~l~~~dv~~~n~~E~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~ 239 (296)
.++.+++++|++++|++|+..+++.. ..+..++.+.+ ..|++.+|+|+|++|++++++++.+++|++++
T Consensus 190 ~~~~~l~~~dil~~n~~E~~~l~g~~---~~~~~~~~~~~-------~~g~~~vvvt~G~~G~~~~~~~~~~~~~~~~v- 258 (330)
T PLN02323 190 GIMSIWDEADIIKVSDEEVEFLTGGD---DPDDDTVVKLW-------HPNLKLLLVTEGEEGCRYYTKDFKGRVEGFKV- 258 (330)
T ss_pred HHHHHHHhCCEEEcCHHHHHHHhCCC---CccHHHHHHHH-------hcCCCEEEEecCCCceEEEeCCCceEeCCccC-
Confidence 67788999999999999999988632 12233444333 35788999999999999999887778877654
Q ss_pred CccccCCCCCchhhhHHHHHHHhcCCC-------HHHHHHHhhHHhhhhhhhccC--CCCCCCCC
Q 022475 240 KEKLVDTNGAGDAFVGGFLSQLVQEKP-------VEDCVRTGCYAANVVIQRSGC--TYPPKPEF 295 (296)
Q Consensus 240 ~~~vvd~tGaGDaf~ag~~~~l~~~~~-------~~~a~~~A~~~aa~~~~~~G~--~~~~~~~~ 295 (296)
+++|||||||+|+|||++++++|++ +++|+++|+++|++++++.|+ ..|+++++
T Consensus 259 --~vvDttGAGDaf~Agfl~~l~~g~~~~~~~~~l~~al~~a~a~Aa~~v~~~g~~~~~~~~~~v 321 (330)
T PLN02323 259 --KAVDTTGAGDAFVGGLLSQLAKDLSLLEDEERLREALRFANACGAITTTERGAIPALPTKEAV 321 (330)
T ss_pred --CCCCCCCcHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHHHHHhccCCccCCCCHHHH
Confidence 7999999999999999999999986 899999999999999999999 45666553
No 19
>cd01172 RfaE_like RfaE encodes a bifunctional ADP-heptose synthase involved in the biosynthesis of the lipopolysaccharide (LPS) core precursor ADP-L-glycero-D-manno-heptose. LPS plays an important role in maintaining the structural integrity of the bacterial outer membrane of gram-negative bacteria. RfaE consists of two domains, a sugar kinase domain, represented here, and a domain belonging to the cytidylyltransferase superfamily.
Probab=100.00 E-value=1.6e-40 Score=288.28 Aligned_cols=262 Identities=19% Similarity=0.232 Sum_probs=207.5
Q ss_pred CceeecCChhHHHHHHHHHhhcCCCcEEEEEeecCCchhHHHHHHHHhcCCceeEEecCCCCceeEEEEEeCCeeceeec
Q 022475 10 NVEYIAGGATQNSIKVAQWMLQIPGATSYIGCIGKDKFGEEMKKNSTAAGVNVKYYEDESAPTGTCAVCVVGGERSLVAN 89 (296)
Q Consensus 10 ~~~~~~GG~~~n~a~~~~~l~~lg~~v~~~~~vG~D~~g~~i~~~l~~~gi~~~~~~~~~~~t~~~~~~~~~~~~~~~~~ 89 (296)
.....+|| +.|+|.++++ +|.++.++|.+|+|.+|+.+++.|+++||++++++.++.+|+.++++++++++.+..+
T Consensus 34 ~~~~~~GG-~~NvA~~la~---LG~~~~~i~~vG~D~~g~~i~~~l~~~gI~~~~~~~~~~~t~~~~~~~~~~~~~~~~~ 109 (304)
T cd01172 34 REEIRLGG-AANVANNLAS---LGAKVTLLGVVGDDEAGDLLRKLLEKEGIDTDGIVDEGRPTTTKTRVIARNQQLLRVD 109 (304)
T ss_pred eEEecCcH-HHHHHHHHHH---hCCCeEEEEEEcCCccHHHHHHHHHhCCCCcceEecCCCCceEEEEEecCCcEEEEEe
Confidence 44567999 6899999997 4599999999999999999999999999999987667777888888777655554433
Q ss_pred cccccccCccccCC--hhhhhhhhcceEEEEecccc-ccChHHHHHHHHHHhhCCCEEEEeCCchhhhhhhhHHHHhhcC
Q 022475 90 LSAANCYKSEHLKR--PEIWSIVEKAKYYYIAGFFL-TVSPESIQMVAEHAAAKNKVFMMNLSAPFICEFFREPQEKALP 166 (296)
Q Consensus 90 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~i~g~~~-~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~ 166 (296)
......++.+.... ....+.++++|++|++++.. .++++.+..+++.+++.++++++|+....+ ..++
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~s~~~~~~~~~~~~~~~~~~a~~~~~~v~~D~~~~~~---------~~~~ 180 (304)
T cd01172 110 REDDSPLSAEEEQRLIERIAERLPEADVVILSDYGKGVLTPRVIEALIAAARELGIPVLVDPKGRDY---------SKYR 180 (304)
T ss_pred cCCCCCCCHHHHHHHHHHHHHhhccCCEEEEEcCCCCccCHHHHHHHHHHHHhcCCCEEEeCCCcch---------hhcc
Confidence 33222333221111 11234578999999987653 456788889999999999999999975431 4678
Q ss_pred CCcEEEcCHHHHHHHHHHcCCCCCCHHHHHHHHhcCCCCCCCCceEEEEeeCCCcEEEEE-CCeEEEEecccCCCccccC
Q 022475 167 YMDYVFGNETEARTFAKVHGWETDNVEEIALKISQWPKASGTHKRITVITQGADPVVVAE-DGKVKLFPVILLPKEKLVD 245 (296)
Q Consensus 167 ~~dv~~~n~~E~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~vvvt~G~~G~~~~~-~~~~~~~~~~~~~~~~vvd 245 (296)
++|++++|++|++.+++....+..+++++++.+. ...|++.+|+|+|++|+++++ +++.+++|++++ ++||
T Consensus 181 ~~d~l~~n~~E~~~l~~~~~~~~~~~~~~~~~l~-----~~~g~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~---~vvd 252 (304)
T cd01172 181 GATLLTPNEKEAREALGDEINDDDELEAAGEKLL-----ELLNLEALLVTLGEEGMTLFERDGEVQHIPALAK---EVYD 252 (304)
T ss_pred CCcEeCCCHHHHHHHhCCCCCChHHHHHHHHHHH-----HHhCCCeEEEEcCCCccEEEcCCCcEEEecCCCC---CCCC
Confidence 8999999999999998643333345666666663 245789999999999999998 777888887664 8999
Q ss_pred CCCCchhhhHHHHHHHhcCCCHHHHHHHhhHHhhhhhhhccCCCCCC
Q 022475 246 TNGAGDAFVGGFLSQLVQEKPVEDCVRTGCYAANVVIQRSGCTYPPK 292 (296)
Q Consensus 246 ~tGaGDaf~ag~~~~l~~~~~~~~a~~~A~~~aa~~~~~~G~~~~~~ 292 (296)
||||||+|+|||+++|++|+++++|+++|+++|+.++++.|+.....
T Consensus 253 ttGAGDaf~ag~i~~l~~g~~~~~al~~a~a~Aa~~~~~~g~~~~~~ 299 (304)
T cd01172 253 VTGAGDTVIATLALALAAGADLEEAAFLANAAAGVVVGKVGTAPVTP 299 (304)
T ss_pred CcCccHHHHHHHHHHHHcCCCHHHHHHHHHHHhheeeecCCCCCcCH
Confidence 99999999999999999999999999999999999999999854433
No 20
>PLN02543 pfkB-type carbohydrate kinase family protein
Probab=100.00 E-value=4e-40 Score=296.69 Aligned_cols=273 Identities=18% Similarity=0.233 Sum_probs=209.7
Q ss_pred CCCceeecCChhHHHHHHHHHhhcCCCcEEEEEeecCCchhHHHHHHHHhcCCceeEEe-cCCCCceeEEEEEe--CCee
Q 022475 8 KENVEYIAGGATQNSIKVAQWMLQIPGATSYIGCIGKDKFGEEMKKNSTAAGVNVKYYE-DESAPTGTCAVCVV--GGER 84 (296)
Q Consensus 8 ~~~~~~~~GG~~~n~a~~~~~l~~lg~~v~~~~~vG~D~~g~~i~~~l~~~gi~~~~~~-~~~~~t~~~~~~~~--~~~~ 84 (296)
...+...+||++.|+|+++++ ||.++.|+|.||+|.+|+.+++.|+++||+++++. .++.+|+.+++.++ ++.+
T Consensus 164 ~~~f~~~~GGa~aNVAvaLAR---LG~~vafIG~VGdD~fG~~l~~~L~~~GVDts~v~~~~~~~Tgla~V~v~~~~~gr 240 (496)
T PLN02543 164 PPEFARAPGGPPSNVAISHVR---LGGRAAFMGKVGDDDFGEELVLMMNKERVQTRAVKFDENAKTACSRMKIKFRDGGK 240 (496)
T ss_pred CCeeEeccCcHHHHHHHHHHH---CCCCEEEEEEeCCCHHHHHHHHHHHHcCCcccceEecCCCCCceEEEEEEeCCCCC
Confidence 456778999999999999998 55999999999999999999999999999999985 66778999998874 3334
Q ss_pred cee--eccccccccCccccCChhhhhhhhcceEEEEeccccccC--hHHHHHHHHHHhhCCCEEEEeCC--chhhh--hh
Q 022475 85 SLV--ANLSAANCYKSEHLKRPEIWSIVEKAKYYYIAGFFLTVS--PESIQMVAEHAAAKNKVFMMNLS--APFIC--EF 156 (296)
Q Consensus 85 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~--~~~~~~~~~~~~~~~~~~~~d~~--~~~~~--~~ 156 (296)
.+. ...+++..+.+++++. ..+.+++++|++++.+..+ .+.+..+++.+++.|+++++|+. .+.|. ..
T Consensus 241 ~~~~~~~~gA~~~L~~~di~~----~~l~~a~ilh~~~~~l~~~~~~~a~~~al~~Ak~~G~~VsfDpN~R~~LW~~~~~ 316 (496)
T PLN02543 241 MVAETVKEAAEDSLLASELNL----AVLKEARMFHFNSEVLTSPSMQSTLFRAIELSKKFGGLIFFDLNLPLPLWRSRDE 316 (496)
T ss_pred EEEEecCCCHHHhCChhhcCH----hHhCCCceEEECChhhcCchHHHHHHHHHHHHHHCCCEEEEeCCCCccccCCHHH
Confidence 442 3335555677776654 4578899999998764222 26778889999999999988874 35563 23
Q ss_pred hhHHHHhhcCCCcEEEcCHHHHHHHHHHcCC------CC------------------CCHHHHHHHHhcCCCCCCCCceE
Q 022475 157 FREPQEKALPYMDYVFGNETEARTFAKVHGW------ET------------------DNVEEIALKISQWPKASGTHKRI 212 (296)
Q Consensus 157 ~~~~~~~~l~~~dv~~~n~~E~~~l~~~~~~------~~------------------~~~~~~~~~l~~~~~~~~~g~~~ 212 (296)
..+.+..+++++|++++|++|++.|++.... +. .+++.+ ..+ ...|++.
T Consensus 317 ~~~~i~~~l~~aDIl~~SeeEa~~Ltg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l------~~~g~~~ 389 (496)
T PLN02543 317 TRELIKKAWNEADIIEVSRQELEFLLDEDYYERKRNYPPQYYAESFEQTKNWRDYYHYTPEEI-APL------WHDGLKL 389 (496)
T ss_pred HHHHHHHHHHhCCEEEecHHHHHHHhCCCcccccccccchhhhhhhhhhhcccccccCCHHHH-HHH------HHCCCCE
Confidence 5666888999999999999999999863200 00 133443 344 2457889
Q ss_pred EEEeeCCCcEEEEECCeEEEEecc---cCCCccccCCCCCchhhhHHHHHHHhc-------CCCHHHHHHHhhHHhhhhh
Q 022475 213 TVITQGADPVVVAEDGKVKLFPVI---LLPKEKLVDTNGAGDAFVGGFLSQLVQ-------EKPVEDCVRTGCYAANVVI 282 (296)
Q Consensus 213 vvvt~G~~G~~~~~~~~~~~~~~~---~~~~~~vvd~tGaGDaf~ag~~~~l~~-------~~~~~~a~~~A~~~aa~~~ 282 (296)
||||+|++|+++++++....++.. .++ ..+||||||||+|+|||+++|++ ++++++|+++|+++|++++
T Consensus 390 VVVT~G~~Ga~~~t~~~~g~v~~~~~~~v~-~~~VDTTGAGDAF~AGfL~~Ll~~~~~~~~g~~l~ealrfAnAaaAl~v 468 (496)
T PLN02543 390 LLVTDGTLRIHYYTPKFDGVVVGTEDVLIT-PFTCDRTGSGDAVVAAIMRKLTTCPEMFEDQDVLERQLRFAVAAGIISQ 468 (496)
T ss_pred EEEEcCCCcEEEEECCCcccccccccccCC-CCCcCCCchHHHHHHHHHHHHHhccccccccccHHHHHHHHHHHHHHHH
Confidence 999999999999986432222111 111 13589999999999999999985 6799999999999999999
Q ss_pred hhccC--CCCCCCCC
Q 022475 283 QRSGC--TYPPKPEF 295 (296)
Q Consensus 283 ~~~G~--~~~~~~~~ 295 (296)
++.|+ .+|+++++
T Consensus 469 t~~GA~~~lPt~~ev 483 (496)
T PLN02543 469 WTIGAVRGFPTESAT 483 (496)
T ss_pred cCCCCCCCCCCHHHH
Confidence 99998 56877654
No 21
>cd01167 bac_FRK Fructokinases (FRKs) mainly from bacteria and plants are enzymes with high specificity for fructose, as are all FRKs, but they catalyzes the conversion of fructose to fructose-6-phosphate, which is an entry point into glycolysis via conversion into glucose-6-phosphate. This is in contrast to FRKs [or ketohexokinases (KHKs)] from mammalia and halophilic archaebacteria, which phosphorylate fructose to fructose-1-phosphate.
Probab=100.00 E-value=6.7e-40 Score=283.15 Aligned_cols=257 Identities=25% Similarity=0.331 Sum_probs=210.6
Q ss_pred CceeecCChhHHHHHHHHHhhcCCCcEEEEEeecCCchhHHHHHHHHhcCCceeEEe-cCCCCceeEEEEEe-CCeecee
Q 022475 10 NVEYIAGGATQNSIKVAQWMLQIPGATSYIGCIGKDKFGEEMKKNSTAAGVNVKYYE-DESAPTGTCAVCVV-GGERSLV 87 (296)
Q Consensus 10 ~~~~~~GG~~~n~a~~~~~l~~lg~~v~~~~~vG~D~~g~~i~~~l~~~gi~~~~~~-~~~~~t~~~~~~~~-~~~~~~~ 87 (296)
.....+||+++|+|+++++ +|.+|.++|.+|+|.+|+.+++.|+++||+++++. .++.+|+.+++.++ +++|++.
T Consensus 22 ~~~~~~GG~~~n~a~~l~~---lg~~v~~i~~vG~D~~g~~i~~~l~~~gi~~~~~~~~~~~~T~~~~~~~~~~g~r~~~ 98 (295)
T cd01167 22 TFTKAPGGAPANVAVALAR---LGGKAAFIGKVGDDEFGDFLLETLKEAGVDTRGIQFDPAAPTTLAFVTLDADGERSFE 98 (295)
T ss_pred cccccCCCcHHHHHHHHHh---cCCCeEEEEeecCcHHHHHHHHHHHHcCCCchheeecCCCCceEEEEEECCCCCEeEE
Confidence 4578899999999999997 45999999999999999999999999999999886 67789999999987 7888877
Q ss_pred eccccccccCccc-cCChhhhhhhhcceEEEEeccccccC--hHHHHHHHHHHhhCCCEEEEeCCch--hhhh--hhhHH
Q 022475 88 ANLSAANCYKSEH-LKRPEIWSIVEKAKYYYIAGFFLTVS--PESIQMVAEHAAAKNKVFMMNLSAP--FICE--FFREP 160 (296)
Q Consensus 88 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~g~~~~~~--~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~--~~~~~ 160 (296)
...+.......+. +. .+.+++++++|++++..... .+.+.++++.+++.+.++++|+... .|.. ...+.
T Consensus 99 ~~~~~~~~~~~~~~~~----~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~d~~~~~~~~~~~~~~~~~ 174 (295)
T cd01167 99 FYRGPAADLLLDTELN----PDLLSEADILHFGSIALASEPSRSALLELLEAAKKAGVLISFDPNLRPPLWRDEEEARER 174 (295)
T ss_pred eecCCcHhhhcCccCC----hhHhccCCEEEEechhhccchHHHHHHHHHHHHHHcCCEEEEcCCCChhhcCCHHHHHHH
Confidence 6655433222221 22 24578899999987643212 3567888999999999999998532 2322 23556
Q ss_pred HHhhcCCCcEEEcCHHHHHHHHHHcCCCCCCHHHHHHHHhcCCCCCCCCceEEEEeeCCCcEEEEECCeEEEEecccCCC
Q 022475 161 QEKALPYMDYVFGNETEARTFAKVHGWETDNVEEIALKISQWPKASGTHKRITVITQGADPVVVAEDGKVKLFPVILLPK 240 (296)
Q Consensus 161 ~~~~l~~~dv~~~n~~E~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~ 240 (296)
++++++++|++++|++|+..+++ ..+..+..+.+ ...+++.+|+|+|++|++++++++.+++|++++
T Consensus 175 ~~~~l~~~d~l~~n~~E~~~l~~-----~~~~~~~~~~l------~~~g~~~vvvt~G~~G~~~~~~~~~~~~~a~~~-- 241 (295)
T cd01167 175 IAELLELADIVKLSDEELELLFG-----EEDPEEIAALL------LLFGLKLVLVTRGADGALLYTKGGVGEVPGIPV-- 241 (295)
T ss_pred HHHHHHhCCEEEecHHHHHHHhC-----CCCHHHHHHHH------hhcCCCEEEEecCCcceEEEECCcceeeCCCCc--
Confidence 77899999999999999999875 34556666666 456789999999999999999998888887664
Q ss_pred ccccCCCCCchhhhHHHHHHHhcCC-------CHHHHHHHhhHHhhhhhhhccC
Q 022475 241 EKLVDTNGAGDAFVGGFLSQLVQEK-------PVEDCVRTGCYAANVVIQRSGC 287 (296)
Q Consensus 241 ~~vvd~tGaGDaf~ag~~~~l~~~~-------~~~~a~~~A~~~aa~~~~~~G~ 287 (296)
+++|||||||+|+|||+++|++|+ ++++|+++|+++|+.++++.|+
T Consensus 242 -~vvDttGAGD~f~a~~~~~l~~g~~~~~~~~~~~~a~~~a~~~aa~~~~~~G~ 294 (295)
T cd01167 242 -EVVDTTGAGDAFVAGLLAQLLSRGLLALDEDELAEALRFANAVGALTCTKAGA 294 (295)
T ss_pred -ceeeCCCccHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHhhHHHhcccCC
Confidence 899999999999999999999999 9999999999999999999986
No 22
>cd01945 ribokinase_group_B Ribokinase-like subgroup B. Found in bacteria and plants, this subgroup is part of the ribokinase/pfkB superfamily. Its oligomerization state is unknown at this time. .
Probab=100.00 E-value=5.3e-40 Score=282.32 Aligned_cols=250 Identities=22% Similarity=0.326 Sum_probs=203.3
Q ss_pred CCCceeecCChhHHHHHHHHHhhcCCCcEEEEEeecCCchhHHHHHHHHhcCCceeEEe-cCCCCceeEEEEEeCCeece
Q 022475 8 KENVEYIAGGATQNSIKVAQWMLQIPGATSYIGCIGKDKFGEEMKKNSTAAGVNVKYYE-DESAPTGTCAVCVVGGERSL 86 (296)
Q Consensus 8 ~~~~~~~~GG~~~n~a~~~~~l~~lg~~v~~~~~vG~D~~g~~i~~~l~~~gi~~~~~~-~~~~~t~~~~~~~~~~~~~~ 86 (296)
.......+||+++|+|.+|++ +|.++.++|.+|+|.+|+.+++.|+++||+++++. .++.+|+.+++...+++++.
T Consensus 28 ~~~~~~~~GG~~~NvA~~l~~---lG~~~~~~~~vG~D~~g~~i~~~l~~~gI~~~~~~~~~~~~t~~~~~~~~~~~~~~ 104 (284)
T cd01945 28 ATDYAVIGGGNAANAAVAVAR---LGGQARLIGVVGDDAIGRLILAELAAEGVDTSFIVVAPGARSPISSITDITGDRAT 104 (284)
T ss_pred EeEEEEecCCHHHHHHHHHHH---cCCCeEEEEEecCchHHHHHHHHHHHcCCCccceeecCCCCCccEEEEccCCCceE
Confidence 345678999999999999997 45999999999999999999999999999999986 45667888776444777777
Q ss_pred eeccccccccCccccCChhhhhhhhcceEEEEeccccccChHHHHHHHHHHhhCCCEEEEeCCchhhhhhhhHHHHhhcC
Q 022475 87 VANLSAANCYKSEHLKRPEIWSIVEKAKYYYIAGFFLTVSPESIQMVAEHAAAKNKVFMMNLSAPFICEFFREPQEKALP 166 (296)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~ 166 (296)
+.+.+....+..+.++. ..+.++|++|++++ .++...++++.++++|.++.+|+....+ .+ ++.+++
T Consensus 105 ~~~~~~~~~~~~~~~~~----~~~~~~~~v~i~~~----~~~~~~~~~~~~~~~g~~v~~~~~~~~~----~~-~~~~~~ 171 (284)
T cd01945 105 ISITAIDTQAAPDSLPD----AILGGADAVLVDGR----QPEAALHLAQEARARGIPIPLDLDGGGL----RV-LEELLP 171 (284)
T ss_pred EEecCCCCCCCcccCCH----HHhCcCCEEEEcCC----CHHHHHHHHHHHHHcCCCeeEeccCCcc----cc-hHHHhc
Confidence 66656555666666653 34789999999864 3467788999999999865554432221 22 677889
Q ss_pred CCcEEEcCHHHHHHHHHHcCCCCCCHHHHHHHHhcCCCCCCCCceEEEEeeCCCcEEEEE-CCeEEEEecccCCCccccC
Q 022475 167 YMDYVFGNETEARTFAKVHGWETDNVEEIALKISQWPKASGTHKRITVITQGADPVVVAE-DGKVKLFPVILLPKEKLVD 245 (296)
Q Consensus 167 ~~dv~~~n~~E~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~vvvt~G~~G~~~~~-~~~~~~~~~~~~~~~~vvd 245 (296)
++|++++|++|++.+++. .+. ++.+.+ ...+++.+|||+|++|+++++ +++.+++|++++ +++|
T Consensus 172 ~~dil~~n~~e~~~l~~~-----~~~-~~~~~l------~~~~~~~vivt~G~~G~~~~~~~~~~~~~~~~~~---~vvD 236 (284)
T cd01945 172 LADHAICSENFLRPNTGS-----ADD-EALELL------ASLGIPFVAVTLGEAGCLWLERDGELFHVPAFPV---EVVD 236 (284)
T ss_pred cCCEEEeChhHHhhhcCC-----CHH-HHHHHH------HhcCCcEEEEEECCCCeEEEcCCCCEEecCCCcc---cccc
Confidence 999999999999988742 222 566666 456789999999999999998 777888877654 8999
Q ss_pred CCCCchhhhHHHHHHHhcCCCHHHHHHHhhHHhhhhhhhccCC
Q 022475 246 TNGAGDAFVGGFLSQLVQEKPVEDCVRTGCYAANVVIQRSGCT 288 (296)
Q Consensus 246 ~tGaGDaf~ag~~~~l~~~~~~~~a~~~A~~~aa~~~~~~G~~ 288 (296)
||||||+|+|||+++|++|+++++|+++|+++|+.++++.|+.
T Consensus 237 t~GAGDaf~ag~l~~l~~g~~~~~al~~a~~~Aa~~~~~~G~~ 279 (284)
T cd01945 237 TTGAGDVFHGAFAHALAEGMPLREALRFASAAAALKCRGLGGR 279 (284)
T ss_pred CCCcHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhccCCc
Confidence 9999999999999999999999999999999999999999984
No 23
>PRK09434 aminoimidazole riboside kinase; Provisional
Probab=100.00 E-value=1.5e-39 Score=282.11 Aligned_cols=264 Identities=25% Similarity=0.344 Sum_probs=213.0
Q ss_pred CceeecCChhHHHHHHHHHhhcCCCcEEEEEeecCCchhHHHHHHHHhcCCceeEEe-cCCCCceeEEEEEe-CCeecee
Q 022475 10 NVEYIAGGATQNSIKVAQWMLQIPGATSYIGCIGKDKFGEEMKKNSTAAGVNVKYYE-DESAPTGTCAVCVV-GGERSLV 87 (296)
Q Consensus 10 ~~~~~~GG~~~n~a~~~~~l~~lg~~v~~~~~vG~D~~g~~i~~~l~~~gi~~~~~~-~~~~~t~~~~~~~~-~~~~~~~ 87 (296)
.....+||+++|+|+++++ +|.++.++|.+|+|.+|+.+++.|+++||+++++. .++.+|+.+++.++ +++|++.
T Consensus 22 ~~~~~~GG~~~N~a~~l~~---LG~~~~~v~~vG~D~~g~~i~~~l~~~gI~~~~~~~~~~~~t~~~~i~~~~~g~r~~~ 98 (304)
T PRK09434 22 RYLKCPGGAPANVAVGIAR---LGGESGFIGRVGDDPFGRFMQQTLQDEGVDTTYLRLDPAHRTSTVVVDLDDQGERSFT 98 (304)
T ss_pred ceeeCCCChHHHHHHHHHH---cCCCceEEEEecCchHHHHHHHHHHHcCCCCcceEEcCCCCceEEEEEECCCCCEeEE
Confidence 3456799999999999997 45999999999999999999999999999999884 67778999998887 4788754
Q ss_pred ec--cccccccCccccCChhhhhhhhcceEEEEeccccccCh--HHHHHHHHHHhhCCCEEEEeCCch--hhh--hhhhH
Q 022475 88 AN--LSAANCYKSEHLKRPEIWSIVEKAKYYYIAGFFLTVSP--ESIQMVAEHAAAKNKVFMMNLSAP--FIC--EFFRE 159 (296)
Q Consensus 88 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~--~~~~~~~~~~~~~~~~~~~d~~~~--~~~--~~~~~ 159 (296)
.. .++...++.+.++ .+.+.+++|++++....++ +...++++.+++++.++++|+... .|. ....+
T Consensus 99 ~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~D~~~~~~~~~~~~~~~~ 172 (304)
T PRK09434 99 FMVRPSADLFLQPQDLP------PFRQGEWLHLCSIALSAEPSRSTTFEAMRRIKAAGGFVSFDPNLREDLWQDEAELRE 172 (304)
T ss_pred EecCCchhhhCCHHHhh------hhcCCCEEEEccccccCchHHHHHHHHHHHHHHcCCEEEECCCCChhhccCHHHHHH
Confidence 32 2323333444333 2567999999986543333 456678888999999999998532 232 23456
Q ss_pred HHHhhcCCCcEEEcCHHHHHHHHHHcCCCCCCHHHHHHHHhcCCCCCCCCceEEEEeeCCCcEEEEECCeEEEEecccCC
Q 022475 160 PQEKALPYMDYVFGNETEARTFAKVHGWETDNVEEIALKISQWPKASGTHKRITVITQGADPVVVAEDGKVKLFPVILLP 239 (296)
Q Consensus 160 ~~~~~l~~~dv~~~n~~E~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~ 239 (296)
.++++++++|++++|++|+..+++ .++.+++++.+. ...+++.++||+|++|++++++++.+++|++++
T Consensus 173 ~~~~~l~~~dil~~n~~e~~~l~g-----~~~~~~~~~~l~-----~~~g~~~vvvt~G~~G~~~~~~~~~~~~~~~~~- 241 (304)
T PRK09434 173 CLRQALALADVVKLSEEELCFLSG-----TSQLEDAIYALA-----DRYPIALLLVTLGAEGVLVHTRGQVQHFPAPSV- 241 (304)
T ss_pred HHHHHHHhcceeeCCHHHHHHHhC-----CCCHHHHHHHHH-----hhcCCcEEEEEecCCceEEEeCCceeEeCCCCC-
Confidence 678889999999999999999876 346778888874 225678999999999999999888888887654
Q ss_pred CccccCCCCCchhhhHHHHHHHhcCC------CHHHHHHHhhHHhhhhhhhccC--CCCCCCCC
Q 022475 240 KEKLVDTNGAGDAFVGGFLSQLVQEK------PVEDCVRTGCYAANVVIQRSGC--TYPPKPEF 295 (296)
Q Consensus 240 ~~~vvd~tGaGDaf~ag~~~~l~~~~------~~~~a~~~A~~~aa~~~~~~G~--~~~~~~~~ 295 (296)
+++|||||||+|+|||+++|++|+ ++++|+++|+++|++++++.|+ ..|+.+++
T Consensus 242 --~~vDttGAGD~f~ag~~~~l~~g~~~~~~~~~~~a~~~a~~~Aa~~v~~~g~~~~~~~~~~~ 303 (304)
T PRK09434 242 --DPVDTTGAGDAFVAGLLAGLSQAGLWTDEAELAEIIAQAQACGALATTAKGAMTALPNRQEL 303 (304)
T ss_pred --CCCcCCCchHHHHHHHHHHHHcCCCccchHHHHHHHHHHHHHHHHHHcccCCcCCCCChHHc
Confidence 789999999999999999999997 8999999999999999999996 56777765
No 24
>PF00294 PfkB: pfkB family carbohydrate kinase; InterPro: IPR011611 This entry includes a variety of carbohydrate and pyrimidine kinases. The family includes phosphomethylpyrimidine kinase (2.7.4.7 from EC). This enzyme is part of the Thiamine pyrophosphate (TPP) synthesis pathway, TPP is an essential cofactor for many enzymes []. ; PDB: 1VM7_B 2ABQ_B 3GO7_B 3GO6_B 3FHY_A 4EOH_B 2YXU_A 2F7K_A 3KEU_A 2YXT_B ....
Probab=100.00 E-value=1.1e-40 Score=288.81 Aligned_cols=267 Identities=26% Similarity=0.405 Sum_probs=217.2
Q ss_pred cCCCceeecCChhHHHHHHHHHhhcCCCcEEEEEeecCCchhHHHHHHHHhcCCceeEEe-cCCCCceeEEEEEe-CCee
Q 022475 7 SKENVEYIAGGATQNSIKVAQWMLQIPGATSYIGCIGKDKFGEEMKKNSTAAGVNVKYYE-DESAPTGTCAVCVV-GGER 84 (296)
Q Consensus 7 ~~~~~~~~~GG~~~n~a~~~~~l~~lg~~v~~~~~vG~D~~g~~i~~~l~~~gi~~~~~~-~~~~~t~~~~~~~~-~~~~ 84 (296)
+..+....+||.+.|+|+++++ +|.+|.++|.+|+|.+|+.+++.|++.||+++++. .++.+|+.+++..+ +++|
T Consensus 27 ~~~~~~~~~GG~~~n~a~~l~~---LG~~v~~i~~vG~D~~g~~i~~~l~~~gv~~~~i~~~~~~~t~~~~~~~~~~g~r 103 (301)
T PF00294_consen 27 RVSSVKRSPGGAGANVAIALAR---LGADVALIGKVGDDFFGEIILEELKERGVDTSYIPRDGDEPTGRCLIIVDPDGER 103 (301)
T ss_dssp EESEEEEEEESHHHHHHHHHHH---TTSEEEEEEEEESSHHHHHHHHHHHHTTEEETTEEEESSSEEEEEEEEEETTSEE
T ss_pred ecceEEEecCcHHHHHHHHHHh---ccCcceEEeeccCcchhhhhhhccccccccccccccccccccceeEeeecccccc
Confidence 5667889999999999999997 45999999999999999999999999999999985 66679999999998 6789
Q ss_pred ceeeccccccccCccccCChhhhhhhhcceEEEEec-cccc-cChHHHHHHHHHHhhCCCEEEEeCCchhhhhhhhHHHH
Q 022475 85 SLVANLSAANCYKSEHLKRPEIWSIVEKAKYYYIAG-FFLT-VSPESIQMVAEHAAAKNKVFMMNLSAPFICEFFREPQE 162 (296)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g-~~~~-~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 162 (296)
++..+.+....++.+.+ ....+.+++++++++ .... .+.+.+..+.+.+++.+. +......+.|.. +.+.+.
T Consensus 104 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~ 177 (301)
T PF00294_consen 104 TFVFSPGANSDLTPDEL----DEEAIDEADILHLSGVSLPEGIPEDLLEALAKAAKKNGP-FDPVFRDPSWDD-LREDLK 177 (301)
T ss_dssp EEEEEEGGGGGGGHHHH----HHHHHHTESEEEEESGHCSTTSHHHHHHHHHHHHHHTTE-EEEEEEGGGSHH-HHHHHH
T ss_pred eeeeccccccccccccc----cccccccccceeecccccccccccceeeecccccccccc-cccccccccccc-cchhhh
Confidence 88888777777766555 236688999999999 3333 334666777777776663 333333333322 467788
Q ss_pred hhcCCCcEEEcCHHHHHHHHHHcCCCCCCHHHHHHHHhcCCCCCCCCceEEEEeeCCCcEEEEECCeEEEEecccCCCcc
Q 022475 163 KALPYMDYVFGNETEARTFAKVHGWETDNVEEIALKISQWPKASGTHKRITVITQGADPVVVAEDGKVKLFPVILLPKEK 242 (296)
Q Consensus 163 ~~l~~~dv~~~n~~E~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~~~ 242 (296)
++++++|++++|++|+..+++... ++.+++.+.+.++ ...+++.+++|+|++|++++++++.++++++ ++++
T Consensus 178 ~~l~~~dil~~n~~E~~~l~~~~~---~~~~~~~~~~~~l---~~~g~~~vivt~G~~G~~~~~~~~~~~~~~~--~~~~ 249 (301)
T PF00294_consen 178 ELLPYADILKPNEEEAEALTGSKI---DDPEDALAALREL---QARGVKIVIVTLGEDGALYYTNDESYHVPPV--PPVN 249 (301)
T ss_dssp HHHHTSSEEEEEHHHHHHHHTCST---SSHHHHHHHHHHH---HHTTSSEEEEEEGGGEEEEEETTEEEEEEEE--SSSS
T ss_pred hhccccchhccccccccccccccc---cchhhhhcccccc---chhhhhhhhccccccCccccccccccccccc--cccc
Confidence 888999999999999999987432 3566666555322 3467899999999999999999999999885 3348
Q ss_pred ccCCCCCchhhhHHHHHHHhcCCCHHHHHHHhhHHhhhhhhhccCCCC
Q 022475 243 LVDTNGAGDAFVGGFLSQLVQEKPVEDCVRTGCYAANVVIQRSGCTYP 290 (296)
Q Consensus 243 vvd~tGaGDaf~ag~~~~l~~~~~~~~a~~~A~~~aa~~~~~~G~~~~ 290 (296)
++|+|||||+|+|||++++++++++++|+++|+++|+.++++.|+..|
T Consensus 250 vvdttGAGD~f~A~~i~~l~~~~~~~~a~~~a~~~aa~~v~~~g~~~~ 297 (301)
T PF00294_consen 250 VVDTTGAGDAFAAGFIYGLLSGMSLEEALKFANAAAALKVQQPGPRSP 297 (301)
T ss_dssp SSSCTTHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTSSSSSGG
T ss_pred ccceeccchhhhHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCCCCcCC
Confidence 999999999999999999999999999999999999999999999543
No 25
>PRK09850 pseudouridine kinase; Provisional
Probab=100.00 E-value=3.7e-40 Score=286.84 Aligned_cols=262 Identities=18% Similarity=0.223 Sum_probs=204.6
Q ss_pred CCceeecCChhHHHHHHHHHhhcCCCcEEEEEeecCCchhHHHHHHHHhcCCceeEE-ecCCCCceeEEEEEe-CCeece
Q 022475 9 ENVEYIAGGATQNSIKVAQWMLQIPGATSYIGCIGKDKFGEEMKKNSTAAGVNVKYY-EDESAPTGTCAVCVV-GGERSL 86 (296)
Q Consensus 9 ~~~~~~~GG~~~n~a~~~~~l~~lg~~v~~~~~vG~D~~g~~i~~~l~~~gi~~~~~-~~~~~~t~~~~~~~~-~~~~~~ 86 (296)
...+..+||++.|+|.++++ +|.++.++|.||+|.+|+.+++.|++.||+++++ +.++.+|+.++++++ +|++.+
T Consensus 33 ~~~~~~~GG~~~NvA~~l~~---lG~~~~~ig~vG~D~~g~~i~~~l~~~gVd~~~~~~~~~~~T~~~~~~~~~~g~~~~ 109 (313)
T PRK09850 33 GKIKFTPGGVGRNIAQNLAL---LGNKAWLLSAVGSDFYGQSLLTQTNQSGVYVDKCLIVPGENTSSYLSLLDNTGEMLV 109 (313)
T ss_pred eEEEEeCCcHHHHHHHHHHH---cCCCeEEEEEecCchhHHHHHHHHHHcCCCchheeecCCCCceEEEEEecCCCCEEE
Confidence 45678899999999999997 4599999999999999999999999999999987 466778999999988 677766
Q ss_pred eec-cccccccCccccCChhhhhhhhcceEEEEeccccccChHHHHHHHHHHhhCCCEEEEeCCchhhhhhhhHHHHhhc
Q 022475 87 VAN-LSAANCYKSEHLKRPEIWSIVEKAKYYYIAGFFLTVSPESIQMVAEHAAAKNKVFMMNLSAPFICEFFREPQEKAL 165 (296)
Q Consensus 87 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l 165 (296)
... .+....++.+.+.. ..+.+.+++++++++ ..+.+.+..+++.+ +++++++|+.. .|. .+.+..++
T Consensus 110 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~v~~~~---~~~~~~~~~~~~~~--~g~~v~~D~~~-~~~---~~~~~~~l 178 (313)
T PRK09850 110 AINDMNISNAITAEYLAQ--HREFIQRAKVIVADC---NISEEALAWILDNA--ANVPVFVDPVS-AWK---CVKVRDRL 178 (313)
T ss_pred EecCchHhhhCCHHHHHH--HHHHHhcCCEEEEeC---CCCHHHHHHHHHhc--cCCCEEEEcCC-HHH---HHHHHhhh
Confidence 543 23333444333321 224578899999976 34556666666643 57889999864 332 13456778
Q ss_pred CCCcEEEcCHHHHHHHHHHcCCCCCCHHHHHHHHhcCCCCCCCCceEEEEeeCCCcEEEEEC-CeEEEEecccCCCcccc
Q 022475 166 PYMDYVFGNETEARTFAKVHGWETDNVEEIALKISQWPKASGTHKRITVITQGADPVVVAED-GKVKLFPVILLPKEKLV 244 (296)
Q Consensus 166 ~~~dv~~~n~~E~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~vvvt~G~~G~~~~~~-~~~~~~~~~~~~~~~vv 244 (296)
+++|++++|.+|+..+++....+.++.+++++.+ ...|++.+|||+|++|+++++. ++..++|+++ +++|
T Consensus 179 ~~~dil~~N~~Ea~~l~g~~~~~~~~~~~~~~~l------~~~g~~~vvvT~G~~G~~~~~~~~~~~~~~~~~---~~vv 249 (313)
T PRK09850 179 NQIHTLKPNRLEAETLSGIALSGREDVAKVAAWF------HQHGLNRLVLSMGGDGVYYSDISGESGWSAPIK---TNVI 249 (313)
T ss_pred ccceEEccCHHHHHHHhCCCCCCHHHHHHHHHHH------HHcCCCEEEEEeCCceEEEEcCCCCeEecCCCC---cccc
Confidence 8999999999999999874433334566777777 3567889999999999999874 4455666554 4899
Q ss_pred CCCCCchhhhHHHHHHHhcCCCHHHHHHHhhHHhhhhhhhccC--CCCCCC
Q 022475 245 DTNGAGDAFVGGFLSQLVQEKPVEDCVRTGCYAANVVIQRSGC--TYPPKP 293 (296)
Q Consensus 245 d~tGaGDaf~ag~~~~l~~~~~~~~a~~~A~~~aa~~~~~~G~--~~~~~~ 293 (296)
|||||||+|+|||+++|++|+++++|+++|+++|+.++++.+. ..|+++
T Consensus 250 DttGAGDaF~agfi~~l~~g~~~~eal~~a~a~aa~~~~~~~~~~~~~~~~ 300 (313)
T PRK09850 250 NVTGAGDAMMAGLASCWVDGMPFAESVRFAQGCSSMALSCEYTNNPDLSIA 300 (313)
T ss_pred cCCCcHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCCCCCcccCHH
Confidence 9999999999999999999999999999999999999999887 345444
No 26
>cd01943 MAK32 MAK32 kinase. MAK32 is a protein found primarily in fungi that is necessary for the structural stability of L-A particles. The L-A virus particule is a specialized compartment for the transcription and replication of double-stranded RNA, known to infect yeast and other fungi. MAK32 is part of the host machinery used by the virus to multiply.
Probab=100.00 E-value=4.4e-40 Score=287.13 Aligned_cols=276 Identities=20% Similarity=0.178 Sum_probs=210.7
Q ss_pred HhhhcCC--CceeecCChhHHHHHHHHHhhcCCCcE--EEEEeecCCchhHHHHHHHHhcCCceeEEecCCCCceeEEEE
Q 022475 3 DELASKE--NVEYIAGGATQNSIKVAQWMLQIPGAT--SYIGCIGKDKFGEEMKKNSTAAGVNVKYYEDESAPTGTCAVC 78 (296)
Q Consensus 3 ~~~~~~~--~~~~~~GG~~~n~a~~~~~l~~lg~~v--~~~~~vG~D~~g~~i~~~l~~~gi~~~~~~~~~~~t~~~~~~ 78 (296)
|.+.... .....+||++.|+|+++++|.+.+.++ .+++.+|+| +|+.+++.|+++||++++.+.++.+|+.++++
T Consensus 11 d~i~~~~~~~~~~~~GG~~~N~A~~~~~l~g~~~~~~~~~~~~vG~D-~G~~l~~~L~~~GVd~~~~~~~~~~Tg~~~v~ 89 (328)
T cd01943 11 DEIEYPDSEPVTNVLGGAGTYAILGARLFLPPPLSRSISWIVDKGSD-FPKSVEDELESWGTGMVFRRDPGRLTTRGLNI 89 (328)
T ss_pred eccccCCCCccccccCCchhhHhhceeeecCCccccceeeEEecCCC-CCHHHHHHHHhcCCceEEEeCCCCcchhhhhh
Confidence 4445543 667889999999999998632422367 889999999 99999999999999999844677789998888
Q ss_pred Ee-CCeeceeeccccccccCccccCChhhhhhhhcceEEEEeccccccChHHHHHHHHHHhh------CCCEEEEeCCch
Q 022475 79 VV-GGERSLVANLSAANCYKSEHLKRPEIWSIVEKAKYYYIAGFFLTVSPESIQMVAEHAAA------KNKVFMMNLSAP 151 (296)
Q Consensus 79 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~------~~~~~~~d~~~~ 151 (296)
++ +++|.++...+.+..+++++++. ..+..++++|+++.... ..+...++++.+++ .+.++++|+...
T Consensus 90 ~~~~g~r~~~~~~~~~~~~~~~~l~~----~~~~~a~~~hl~~~~~~-~~~~~~~~~~~a~~~~~d~~~g~~~~~d~~~~ 164 (328)
T cd01943 90 YDGNDRRFFKYLTPKKRIDVSDDLNS----TPLIRSSCIHLICSPER-CASIVDDIINLFKLLKGNSPTRPKIVWEPLPD 164 (328)
T ss_pred cCCCCcceeeecCccccccccccccc----ccccCCCeEEEECCHHH-HHHHHHHHHHHHHhhccccCCccEEEEecCCc
Confidence 76 56777766666666777777764 34678999999874321 12677778888887 778888998643
Q ss_pred hhhhhhhHHHHhhcCCCcEEEcCHHHHHHHHHHcCCCCCCHHHHH-----HHHhcCCCCCCCCceEEEEeeCCCcEEEEE
Q 022475 152 FICEFFREPQEKALPYMDYVFGNETEARTFAKVHGWETDNVEEIA-----LKISQWPKASGTHKRITVITQGADPVVVAE 226 (296)
Q Consensus 152 ~~~~~~~~~~~~~l~~~dv~~~n~~E~~~l~~~~~~~~~~~~~~~-----~~l~~~~~~~~~g~~~vvvt~G~~G~~~~~ 226 (296)
.+.....+.+..+++++|++++|++|+..+++....+....++.. ..+.++ ...+++.+|||+|++|+++++
T Consensus 165 ~~~~~~~~~l~~~l~~~dil~~n~~Ea~~l~g~~~~~~~~~~~~~~~~~~~~~~~~---~~~g~~~vvvt~G~~Ga~~~~ 241 (328)
T cd01943 165 SCDPENLEDLLQALPRVDVFSPNLEEAARLLGLPTSEPSSDEEKEAVLQALLFSGI---LQDPGGGVVLRCGKLGCYVGS 241 (328)
T ss_pred ccChhhHHHHHHHhccCCEECCCHHHHHHHhCCCCCCccchhhhhhhHHHHHHHhh---hccCCCEEEEEeCCCCCEEEe
Confidence 221122455789999999999999999999875332221122211 111111 245678999999999999988
Q ss_pred --CCeEEEEecccCCCccccCCCCCchhhhHHHHHHHhcCCCHHHHHHHhhHHhhhhhhhccC
Q 022475 227 --DGKVKLFPVILLPKEKLVDTNGAGDAFVGGFLSQLVQEKPVEDCVRTGCYAANVVIQRSGC 287 (296)
Q Consensus 227 --~~~~~~~~~~~~~~~~vvd~tGaGDaf~ag~~~~l~~~~~~~~a~~~A~~~aa~~~~~~G~ 287 (296)
+++.+++|++++++.+++|||||||+|+|||++++++|+++++|+++|+++|++++++.|.
T Consensus 242 ~~~~~~~~~p~~~v~~~~vvDttGAGDaF~agfl~~l~~g~~~~~al~~a~a~Aa~~v~~~G~ 304 (328)
T cd01943 242 ADSGPELWLPAYHTKSTKVVDPTGGGNSFLGGFAAGLALTKSIDEACIYGSVAASFAIEQVGL 304 (328)
T ss_pred cCCCceEecCCccCCCCcccCCCCchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHccCCC
Confidence 5667888877654458999999999999999999999999999999999999999999996
No 27
>cd01940 Fructoselysine_kinase_like Fructoselysine kinase-like. Fructoselysine is a fructoseamine formed by glycation, a non-enzymatic reaction of glucose with a primary amine followed by an Amadori rearrangement, resulting in a protein that is modified at the amino terminus and at the lysine side chains. Fructoseamines are typically metabolized by fructoseamine-3-kinase, especially in higher eukaryotes. In E. coli, fructoselysine kinase has been shown in vitro to catalyze the phosphorylation of fructoselysine. It is proposed that fructoselysine is released from glycated proteins during human digestion and is partly metabolized by bacteria in the hind gut using a protein such as fructoselysine kinase. This family is found only in bacterial sequences, and its oligomeric state is currently unknown.
Probab=100.00 E-value=1.5e-39 Score=276.56 Aligned_cols=245 Identities=17% Similarity=0.268 Sum_probs=197.9
Q ss_pred ceeecCChhHHHHHHHHHhhcCCCcEEEEEeecCCchhHHHHHHHHhcCCceeEEecCCCCceeEEEEEeCCeeceeecc
Q 022475 11 VEYIAGGATQNSIKVAQWMLQIPGATSYIGCIGKDKFGEEMKKNSTAAGVNVKYYEDESAPTGTCAVCVVGGERSLVANL 90 (296)
Q Consensus 11 ~~~~~GG~~~n~a~~~~~l~~lg~~v~~~~~vG~D~~g~~i~~~l~~~gi~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~ 90 (296)
...++||++.|+|.++++ +|.++.++|.+|+|.+|+.+++.|++.||+++++...+.+|+.+++..++++|+++.+.
T Consensus 17 ~~~~~GG~~~Nva~~la~---lG~~~~~~~~vG~D~~g~~i~~~l~~~gI~~~~v~~~~~~t~~~~~~~~~g~r~~~~~~ 93 (264)
T cd01940 17 GKMYPGGNALNVAVYAKR---LGHESAYIGAVGNDDAGAHVRSTLKRLGVDISHCRVKEGENAVADVELVDGDRIFGLSN 93 (264)
T ss_pred ceecCCCcHHHHHHHHHH---cCCCeeEEecccCchhHHHHHHHHHHcCCChhheEEcCCCCceEEEEecCCceEEEeec
Confidence 567899999999999997 45999999999999999999999999999999986545678888766557788765543
Q ss_pred -ccccccCccccCChhhhhhhhcceEEEEeccccccChHHHHHHHHHHhhCCCEEEEeCCchhhhhhhhHHHHhhcCCCc
Q 022475 91 -SAANCYKSEHLKRPEIWSIVEKAKYYYIAGFFLTVSPESIQMVAEHAAAKNKVFMMNLSAPFICEFFREPQEKALPYMD 169 (296)
Q Consensus 91 -~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~d 169 (296)
+......+... ..+.+.++|++|++++.. .+.+.++++.++++++++++|+... | ..+.++.+++++|
T Consensus 94 ~~~~~~~~~~~~----~~~~~~~~~~v~~~~~~~---~~~~~~~~~~a~~~g~~v~~D~~~~-~---~~~~~~~~~~~~d 162 (264)
T cd01940 94 KGGVAREHPFEA----DLEYLSQFDLVHTGIYSH---EGHLEKALQALVGAGALISFDFSDR-W---DDDYLQLVCPYVD 162 (264)
T ss_pred CCcHHhcccCcc----cHhHHhcCCEEEEccccc---HHHHHHHHHHHHHcCCEEEEcCccc-C---CHHHHHhhcccCC
Confidence 32222222211 224578999999996532 5678889999999999999999653 2 1233667899999
Q ss_pred EEEcCHHHHHHHHHHcCCCCCCHHHHHHHHhcCCCCCCCCceEEEEeeCCCcEEEEECCeEEEEecccCCCccccCCCCC
Q 022475 170 YVFGNETEARTFAKVHGWETDNVEEIALKISQWPKASGTHKRITVITQGADPVVVAEDGKVKLFPVILLPKEKLVDTNGA 249 (296)
Q Consensus 170 v~~~n~~E~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~~~vvd~tGa 249 (296)
++++|.+|.. ..+.+++++.+ ...+++.+|+|+|++|++++++++.+++|++++ +++|||||
T Consensus 163 ~~~~~~~~~~---------~~~~~~~~~~l------~~~~~~~vvvT~G~~G~~~~~~~~~~~~~~~~~---~~vDttGA 224 (264)
T cd01940 163 FAFFSASDLS---------DEEVKAKLKEA------VSRGAKLVIVTRGEDGAIAYDGAVFYSVAPRPV---EVVDTLGA 224 (264)
T ss_pred EEEechhhcC---------cchHHHHHHHH------HHcCCCEEEEEECCCCeEEEeCCeEEecCCcCC---CCCCCCCc
Confidence 9999987652 23455666666 356788999999999999999888888876554 89999999
Q ss_pred chhhhHHHHHHHhcCCC-HHHHHHHhhHHhhhhhhhccC
Q 022475 250 GDAFVGGFLSQLVQEKP-VEDCVRTGCYAANVVIQRSGC 287 (296)
Q Consensus 250 GDaf~ag~~~~l~~~~~-~~~a~~~A~~~aa~~~~~~G~ 287 (296)
||+|+|||+++|++|++ +++|+++|+++|++++++.|+
T Consensus 225 GDaf~ag~i~~l~~g~~~~~~al~~a~~~aa~~~~~~G~ 263 (264)
T cd01940 225 GDSFIAGFLLSLLAGGTAIAEAMRQGAQFAAKTCGHEGA 263 (264)
T ss_pred hHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHhcccCC
Confidence 99999999999999999 999999999999999999986
No 28
>PRK09954 putative kinase; Provisional
Probab=100.00 E-value=1.7e-39 Score=287.80 Aligned_cols=261 Identities=15% Similarity=0.157 Sum_probs=200.6
Q ss_pred CCceeecCChhHHHHHHHHHhhcCCCcEEEEEeecCCchhHHHHHHHHhcCCceeEEe-cCCCCceeEEEEEeCCeecee
Q 022475 9 ENVEYIAGGATQNSIKVAQWMLQIPGATSYIGCIGKDKFGEEMKKNSTAAGVNVKYYE-DESAPTGTCAVCVVGGERSLV 87 (296)
Q Consensus 9 ~~~~~~~GG~~~n~a~~~~~l~~lg~~v~~~~~vG~D~~g~~i~~~l~~~gi~~~~~~-~~~~~t~~~~~~~~~~~~~~~ 87 (296)
......+||+|.|+|+++++ +|.+|.++|.||+|.+|+.+++.|++.||+++++. .++.+|+.++++.++++++++
T Consensus 86 ~~~~~~~GG~~~NvA~~lar---LG~~v~~ig~VG~D~~G~~i~~~l~~~GVd~~~~~~~~~~~T~~~~~~~~~~~~~~~ 162 (362)
T PRK09954 86 GTIHCSAGGVGRNIAHNLAL---LGRDVHLLSAIGDDFYGETLLEETRRAGVNVSGCIRLHGQSTSTYLAIANRQDETVL 162 (362)
T ss_pred ceEEEecCcHHHHHHHHHHH---cCCCeEEEEEECCCHHHHHHHHHHHHcCCCccceEEcCCCCCeEEEEEEcCCCCEEE
Confidence 45678899999999999998 55999999999999999999999999999999875 667778888887775555555
Q ss_pred eccc--cccccCccccCChhhhhhhhcceEEEEeccccccChHHHHHHHHHHhhCCCEEEEeCCchhhhhhhhHHHHhhc
Q 022475 88 ANLS--AANCYKSEHLKRPEIWSIVEKAKYYYIAGFFLTVSPESIQMVAEHAAAKNKVFMMNLSAPFICEFFREPQEKAL 165 (296)
Q Consensus 88 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l 165 (296)
...+ ....++++.+.. ..+.+..++++++++ ..+++.+..+++.+ +++++++|+....+ .+.+++++
T Consensus 163 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~v~~~~---~~~~~~~~~~~~~a--~~~~v~~D~~~~~~----~~~~~~~l 231 (362)
T PRK09954 163 AINDTHILQQLTPQLLNG--SRDLIRHAGVVLADC---NLTAEALEWVFTLA--DEIPVFVDTVSEFK----AGKIKHWL 231 (362)
T ss_pred EEcCchhhhcCCHHHHHH--HHHHHhcCCEEEEEC---CCCHHHHHHHHHhC--CCCcEEEECCCHHH----hhhhhhhh
Confidence 4322 223444433332 223467889998875 34566666666654 47889999865331 23366789
Q ss_pred CCCcEEEcCHHHHHHHHHHcCCCCCCHHHHHHHHhcCCCCCCCCceEEEEeeCCCcEEEEECC-eEEEEecccCCCcccc
Q 022475 166 PYMDYVFGNETEARTFAKVHGWETDNVEEIALKISQWPKASGTHKRITVITQGADPVVVAEDG-KVKLFPVILLPKEKLV 244 (296)
Q Consensus 166 ~~~dv~~~n~~E~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~vvvt~G~~G~~~~~~~-~~~~~~~~~~~~~~vv 244 (296)
+++|++++|++|++.+++....+.++.+++++.+ ...|++.||||+|++|+++++.+ +.+++|++++ ++|
T Consensus 232 ~~~dil~~n~~Ea~~l~g~~~~~~~~~~~~~~~l------~~~g~~~Vvvt~G~~G~~~~~~~~~~~~~~~~~v---~vv 302 (362)
T PRK09954 232 AHIHTLKPTQPELEILWGQAITSDADRNAAVNAL------HQQGVQQIFVYLPDESVFCSEKDGEQFLLTAPAH---TTV 302 (362)
T ss_pred ccccEEecCHHHHHHHcCCCCCCHHHHHHHHHHH------HHcCCCEEEEEeCCccEEEEeCCCceEeccCCCc---ccc
Confidence 9999999999999999864322223455677777 46788999999999999988744 4566666554 899
Q ss_pred CCCCCchhhhHHHHHHHhcCCCHHHHHHHhhHHhhhhhhhccCCCCCC
Q 022475 245 DTNGAGDAFVGGFLSQLVQEKPVEDCVRTGCYAANVVIQRSGCTYPPK 292 (296)
Q Consensus 245 d~tGaGDaf~ag~~~~l~~~~~~~~a~~~A~~~aa~~~~~~G~~~~~~ 292 (296)
|||||||+|+|||++++++|+++++|+++|+++|++++.+..+..|+.
T Consensus 303 DttGAGDaF~Ag~l~~l~~g~~~~eal~~a~a~Aal~~~s~~~~~~~~ 350 (362)
T PRK09954 303 DSFGADDGFMAGLVYSFLEGYSFRDSARFAMACAAISRASGSLNNPTL 350 (362)
T ss_pred cccchHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCCcCCCcC
Confidence 999999999999999999999999999999999999988766655553
No 29
>TIGR03168 1-PFK hexose kinase, 1-phosphofructokinase family. This family consists largely of 1-phosphofructokinases, but also includes tagatose-6-kinases and 6-phosphofructokinases.
Probab=100.00 E-value=2.1e-39 Score=281.10 Aligned_cols=270 Identities=18% Similarity=0.208 Sum_probs=212.5
Q ss_pred HhhhcCCCceeecCChhHHHHHHHHHhhcCCCcEEEEEeecCCchhHHHHHHHHhcCCceeEEecCCCCceeEEEEEe-C
Q 022475 3 DELASKENVEYIAGGATQNSIKVAQWMLQIPGATSYIGCIGKDKFGEEMKKNSTAAGVNVKYYEDESAPTGTCAVCVV-G 81 (296)
Q Consensus 3 ~~~~~~~~~~~~~GG~~~n~a~~~~~l~~lg~~v~~~~~vG~D~~g~~i~~~l~~~gi~~~~~~~~~~~t~~~~~~~~-~ 81 (296)
++..+..+.+.++||.+.|+|.++++ +|.++.++|.+|+| +|+.+++.|++.||++++++.. ..|+.++...+ +
T Consensus 22 ~~~~~~~~~~~~~GG~~~N~a~~l~~---lg~~~~~i~~vG~D-~g~~i~~~l~~~gI~~~~i~~~-~~t~~~~~~~~~~ 96 (303)
T TIGR03168 22 GEVNRVAAVRKDAGGKGINVARVLAR---LGAEVVATGFLGGF-TGEFIEALLAEEGIKNDFVEVK-GETRINVKIKESS 96 (303)
T ss_pred CceeecCcccccCCcchhhHHHHHHH---cCCCeEEEEEeCCc-hhHHHHHHHHHcCCCceEEECC-CCCEEeEEEEeCC
Confidence 34556667789999999999999998 45999999999998 7999999999999999998754 35667776666 5
Q ss_pred CeeceeeccccccccCccccCC--hhhhhhhhcceEEEEecccc-ccChHHHHHHHHHHhhCCCEEEEeCCchhhhhhhh
Q 022475 82 GERSLVANLSAANCYKSEHLKR--PEIWSIVEKAKYYYIAGFFL-TVSPESIQMVAEHAAAKNKVFMMNLSAPFICEFFR 158 (296)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~i~g~~~-~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 158 (296)
+++..+...+ ..++++.+.. ....+.++++|++|++++.. ..+.+.+..+++.+++.|+++++|+.....
T Consensus 97 g~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~g~~v~~D~~~~~~----- 169 (303)
T TIGR03168 97 GEETELNEPG--PEISEEELEQLLEKLRELLASGDIVVISGSLPPGVPPDFYAQLIAIARKRGAKVILDTSGEAL----- 169 (303)
T ss_pred CCEEEEeCcC--CCCCHHHHHHHHHHHHHhccCCCEEEEeCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCcHHH-----
Confidence 6555454433 2355444432 11223478999999998653 356678889999999999999999965321
Q ss_pred HHHHhhcCCCcEEEcCHHHHHHHHHHcCCCCCCHHHHHHHHhcCCCCCCCCceEEEEeeCCCcEEEEECCeEEEEecccC
Q 022475 159 EPQEKALPYMDYVFGNETEARTFAKVHGWETDNVEEIALKISQWPKASGTHKRITVITQGADPVVVAEDGKVKLFPVILL 238 (296)
Q Consensus 159 ~~~~~~l~~~dv~~~n~~E~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~vvvt~G~~G~~~~~~~~~~~~~~~~~ 238 (296)
.+.+..++|++++|+.|+..+++....+.++..++++.+ ...+++.+|+|+|++|++++++++.+++|++++
T Consensus 170 --~~~~~~~~dil~~n~~E~~~l~g~~~~~~~~~~~~~~~l------~~~g~~~vviT~g~~G~~~~~~~~~~~~~~~~~ 241 (303)
T TIGR03168 170 --REALAAKPFLIKPNHEELEELFGRELKTEEEIIEAAREL------LDRGAENVLVSLGADGALLVTKEGALKATPPKV 241 (303)
T ss_pred --HHHHhcCCcEECCCHHHHHHHhCCCCCCHHHHHHHHHHH------HHcCCCEEEEeecCCCcEEEeCCceEEeeCCcc
Confidence 122335799999999999999875432234555666666 355678999999999999999888888876654
Q ss_pred CCccccCCCCCchhhhHHHHHHHhcCCCHHHHHHHhhHHhhhhhhhccCCCCCCCCC
Q 022475 239 PKEKLVDTNGAGDAFVGGFLSQLVQEKPVEDCVRTGCYAANVVIQRSGCTYPPKPEF 295 (296)
Q Consensus 239 ~~~~vvd~tGaGDaf~ag~~~~l~~~~~~~~a~~~A~~~aa~~~~~~G~~~~~~~~~ 295 (296)
+++|||||||+|+|+|++++++|+++++|+++|+++|+.++++.|+..|+.+++
T Consensus 242 ---~~vDttGAGD~F~a~~~~~l~~g~~i~~a~~~A~~~aa~~~~~~G~~~~~~~~~ 295 (303)
T TIGR03168 242 ---EVVNTVGAGDSMVAGFLAGLARGLSLEEALRFAVAAGSAAAFSPGTGLPDPEDV 295 (303)
T ss_pred ---eeecCcCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCCcCCCCHHHH
Confidence 789999999999999999999999999999999999999999999987876653
No 30
>TIGR02198 rfaE_dom_I rfaE bifunctional protein, domain I. RfaE is a protein involved in the biosynthesis of ADP-L-glycero-D-manno-heptose, a precursor for LPS inner core biosynthesis. RfaE is a bifunctional protein in E. coli, and separate proteins in some other genome. The longer, N-terminal domain I (this family) is suggested to act in D-glycero-D-manno-heptose 1-phosphate biosynthesis, while domain II (TIGR02199) adds ADP to yield ADP-D-glycero-D-manno-heptose.
Probab=100.00 E-value=2.1e-39 Score=282.63 Aligned_cols=263 Identities=17% Similarity=0.205 Sum_probs=203.3
Q ss_pred ceeecCChhHHHHHHHHHhhcCCCcEEEEEeecCCchhHHHHHHHHhcCCceeEEe-cCCCCceeEEEEEeCCeeceeec
Q 022475 11 VEYIAGGATQNSIKVAQWMLQIPGATSYIGCIGKDKFGEEMKKNSTAAGVNVKYYE-DESAPTGTCAVCVVGGERSLVAN 89 (296)
Q Consensus 11 ~~~~~GG~~~n~a~~~~~l~~lg~~v~~~~~vG~D~~g~~i~~~l~~~gi~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~ 89 (296)
.+.++|| +.|+|.++++ +|.++.++|.||+|.+|+.+++.|+++||+++++. .++.+|+.++.+++.+.+.+...
T Consensus 43 ~~~~~GG-a~NvA~~l~~---lg~~v~~i~~vG~D~~g~~i~~~l~~~gI~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~ 118 (315)
T TIGR02198 43 EEDRLGG-AANVARNIAS---LGARVFLVGVVGDDEAGKRLEALLAEEGIDTSGLIRDKDRPTTTKTRVLARNQQLLRVD 118 (315)
T ss_pred EEecCcH-HHHHHHHHHh---cCCceEEEEEEecchhHHHHHHHHHHCCCCcceEEECCCCCcceEEEEEcCCeEEEEec
Confidence 3677899 8999999997 45999999999999999999999999999998874 66778888887776533222222
Q ss_pred cccccccCccccCC--hhhhhhhhcceEEEEecccc-ccChHHHHHHHHHHhhCCCEEEEeCCchhhhhhhhHHHHhhcC
Q 022475 90 LSAANCYKSEHLKR--PEIWSIVEKAKYYYIAGFFL-TVSPESIQMVAEHAAAKNKVFMMNLSAPFICEFFREPQEKALP 166 (296)
Q Consensus 90 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~i~g~~~-~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~ 166 (296)
......++.+.... ....+.++++|+++++++.. .++++.+..+++.+++.++++++|+.... ...++
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~---------~~~~~ 189 (315)
T TIGR02198 119 FEERDPINAELEARLLAAIREQLASADAVVLSDYAKGVLTPRVVQEVIAAARKHGKPVLVDPKGKD---------FSRYR 189 (315)
T ss_pred CCCCCCCCHHHHHHHHHHHHhhhhhCCEEEEecCCCCccCHHHHHHHHHHHHhcCCCEEEeCCCcc---------hhhcC
Confidence 22111232211111 12334578999999988652 45678888999999999999999986432 13477
Q ss_pred CCcEEEcCHHHHHHHHHHcCCCCCCHHHHHHHHhcCCCCCCCCceEEEEeeCCCcEEEEEC-CeEEEEecccCCCccccC
Q 022475 167 YMDYVFGNETEARTFAKVHGWETDNVEEIALKISQWPKASGTHKRITVITQGADPVVVAED-GKVKLFPVILLPKEKLVD 245 (296)
Q Consensus 167 ~~dv~~~n~~E~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~vvvt~G~~G~~~~~~-~~~~~~~~~~~~~~~vvd 245 (296)
++|++++|.+|++.+++. ..+..+.+++++.+. ...|++.+|||+|++|++++++ ++.+++|++++ +++|
T Consensus 190 ~~d~l~~n~~E~~~l~~~-~~~~~~~~~~~~~l~-----~~~g~~~vivT~G~~G~~~~~~~~~~~~~~~~~~---~vvd 260 (315)
T TIGR02198 190 GATLITPNRKEAEAAVGA-CDTEAELVQAAEKLL-----EELDLEALLVTRSEKGMTLFTREGEPIHIPAQAR---EVYD 260 (315)
T ss_pred CCcEECCCHHHHHHHhCC-CCCHHHHHHHHHHHH-----HHcCCCEEEEEcCCCCeEEEecCCCeEEecCCCC---CCCC
Confidence 899999999999999862 122344556666653 2457899999999999999884 56788876654 8999
Q ss_pred CCCCchhhhHHHHHHHhcCCCHHHHHHHhhHHhhhhhhhccCCCCCCCCC
Q 022475 246 TNGAGDAFVGGFLSQLVQEKPVEDCVRTGCYAANVVIQRSGCTYPPKPEF 295 (296)
Q Consensus 246 ~tGaGDaf~ag~~~~l~~~~~~~~a~~~A~~~aa~~~~~~G~~~~~~~~~ 295 (296)
||||||+|+|||++++++|+++++|+++|+++|+.++++.|+..+.++++
T Consensus 261 t~GAGDaf~ag~~~~l~~g~~~~~al~~A~~~aa~~~~~~G~~~~~~~~~ 310 (315)
T TIGR02198 261 VTGAGDTVIATLALALAAGASLEEACRLANAAAGVVVGKLGTATVSPAEL 310 (315)
T ss_pred CcCccHHHHHHHHHHHHcCCCHHHHHHHHHHHhhhhhccCCCCCCCHHHH
Confidence 99999999999999999999999999999999999999999976665543
No 31
>PRK13508 tagatose-6-phosphate kinase; Provisional
Probab=100.00 E-value=2.2e-39 Score=281.57 Aligned_cols=263 Identities=14% Similarity=0.151 Sum_probs=203.0
Q ss_pred cCCCceeecCChhHHHHHHHHHhhcCCCcEEEEEeecCCchhHHHHHHHHhcCCceeEEecCCCCceeEEEEEeCCeece
Q 022475 7 SKENVEYIAGGATQNSIKVAQWMLQIPGATSYIGCIGKDKFGEEMKKNSTAAGVNVKYYEDESAPTGTCAVCVVGGERSL 86 (296)
Q Consensus 7 ~~~~~~~~~GG~~~n~a~~~~~l~~lg~~v~~~~~vG~D~~g~~i~~~l~~~gi~~~~~~~~~~~t~~~~~~~~~~~~~~ 86 (296)
...+....+||++.|+|.++++ +|.++.++|.+|+ .+|+.+++.|++ ||++++++.+ .+|+.+++++++|++++
T Consensus 27 ~~~~~~~~~GG~~~NvA~~la~---LG~~~~~~~~vGd-~~G~~i~~~l~~-gI~~~~~~~~-~~t~~~~~~~~~g~~~~ 100 (309)
T PRK13508 27 RVVDVSKTAGGKGLNVTRVLSE---FGENVLATGLIGG-ELGQFIAEHLDD-QIKHAFYKIK-GETRNCIAILHEGQQTE 100 (309)
T ss_pred EecceeecCCchHHHHHHHHHH---cCCCeEEEEEecC-hhHHHHHHHHHc-CCCceEEECC-CCCeeeEEEEeCCCEEE
Confidence 4556788999999999999997 5599999999996 689999999999 9999987654 46777877777788877
Q ss_pred eeccccccccCccccCC--hhhhhhhhcceEEEEecccccc-ChHHHHHHHHHHhhCCCEEEEeCCchhhhhhhhHHHHh
Q 022475 87 VANLSAANCYKSEHLKR--PEIWSIVEKAKYYYIAGFFLTV-SPESIQMVAEHAAAKNKVFMMNLSAPFICEFFREPQEK 163 (296)
Q Consensus 87 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~i~g~~~~~-~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 163 (296)
+...++. +..+.... ..+.+.+.++|++|++++.... +.+.+..+++.++++|+++++|+.... .+.+..
T Consensus 101 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~-----~~~~~~ 173 (309)
T PRK13508 101 ILEKGPE--ISVQEADGFLHHFKQLLESVEVVAISGSLPAGLPVDYYAQLIELANQAGKPVVLDCSGAA-----LQAVLE 173 (309)
T ss_pred EECCCCC--CCHHHHHHHHHHHHHhccCCCEEEEeCCCCCCcCHHHHHHHHHHHHHCCCEEEEECCcHH-----HHHHHh
Confidence 7655432 33222211 1123457899999999875432 346788899999999999999996432 122333
Q ss_pred hcCCCcEEEcCHHHHHHHHHHcCC-CCCCHHHHHHHHhcCCCCCCCCceEEEEeeCCCcEEEEECCeEEEEecccCCCcc
Q 022475 164 ALPYMDYVFGNETEARTFAKVHGW-ETDNVEEIALKISQWPKASGTHKRITVITQGADPVVVAEDGKVKLFPVILLPKEK 242 (296)
Q Consensus 164 ~l~~~dv~~~n~~E~~~l~~~~~~-~~~~~~~~~~~l~~~~~~~~~g~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~~~ 242 (296)
.++.+|++++|++|++.+++.... +.++..++++.+ ...|++.+++|+|++|++++++++.++++++++ +
T Consensus 174 ~~~~~dii~~n~~E~~~l~g~~~~~~~~~~~~~~~~~------~~~g~~~vvvT~G~~G~~~~~~~~~~~~~~~~v---~ 244 (309)
T PRK13508 174 SPYKPTVIKPNIEELSQLLGKEVSEDLDELKEVLQQP------LFEGIEWIIVSLGADGAFAKHNDTFYKVDIPKI---E 244 (309)
T ss_pred ccCCceEEccCHHHHHHHhCCCCCCCHHHHHHHHHHH------HHcCCCEEEEecCCCceEEEeCCceEEEeCCCc---c
Confidence 457899999999999999864211 111233344444 345789999999999999998888888877655 8
Q ss_pred ccCCCCCchhhhHHHHHHHhcCCCHHHHHHHhhHHhhhhhhhccCCCCC
Q 022475 243 LVDTNGAGDAFVGGFLSQLVQEKPVEDCVRTGCYAANVVIQRSGCTYPP 291 (296)
Q Consensus 243 vvd~tGaGDaf~ag~~~~l~~~~~~~~a~~~A~~~aa~~~~~~G~~~~~ 291 (296)
+||||||||+|+|||+++|++|+++++|+++|+++|++++++.+....+
T Consensus 245 vvDttGAGDaF~Agfi~~l~~g~~~~~al~~a~a~aa~~~~~~~~~~~~ 293 (309)
T PRK13508 245 VVNPVGSGDSTVAGIASGLLHQEDDADLLKKANVLGMLNAQEKQTGHVN 293 (309)
T ss_pred ccCCcChhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcCcCCCC
Confidence 9999999999999999999999999999999999999999998875433
No 32
>cd01942 ribokinase_group_A Ribokinase-like subgroup A. Found in bacteria and archaea, this subgroup is part of the ribokinase/pfkB superfamily. Its oligomerization state is unknown at this time.
Probab=100.00 E-value=6e-39 Score=275.06 Aligned_cols=251 Identities=22% Similarity=0.285 Sum_probs=200.7
Q ss_pred hcCCCceeecCChhHHHHHHHHHhhcCCCcEEEEEeecCCchhHHHHHHHHhcCCceeEE-ecCCCCceeEEEEEe-CCe
Q 022475 6 ASKENVEYIAGGATQNSIKVAQWMLQIPGATSYIGCIGKDKFGEEMKKNSTAAGVNVKYY-EDESAPTGTCAVCVV-GGE 83 (296)
Q Consensus 6 ~~~~~~~~~~GG~~~n~a~~~~~l~~lg~~v~~~~~vG~D~~g~~i~~~l~~~gi~~~~~-~~~~~~t~~~~~~~~-~~~ 83 (296)
.+..+.+..+||++.|+|.++++ +|.++.++|.+|+|.+|+.+++.|++.||+++++ ..++.+|+.+++.++ +++
T Consensus 26 ~~~~~~~~~~GG~~~Nva~~l~~---lg~~~~~~~~vG~D~~g~~i~~~l~~~gi~~~~~~~~~~~~t~~~~~~~~~~~~ 102 (279)
T cd01942 26 VLVKDLRREFGGSAGNTAVALAK---LGLSPGLVAAVGEDFHGRLYLEELREEGVDTSHVRVVDEDSTGVAFILTDGDDN 102 (279)
T ss_pred EecceeeecCCcHHHHHHHHHHH---cCCCceEEEEecCCcchHHHHHHHHHcCCCccceEEcCCCCcceEEEEEcCCCC
Confidence 33456789999999999999997 4599999999999999999999999999999998 466778999988887 566
Q ss_pred eceeeccccccccCccccCChhhhhhhhcceEEEEeccccccChHHHHHHHHHHhhCCCEEEEeCCchhhhhhhhHHHHh
Q 022475 84 RSLVANLSAANCYKSEHLKRPEIWSIVEKAKYYYIAGFFLTVSPESIQMVAEHAAAKNKVFMMNLSAPFICEFFREPQEK 163 (296)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 163 (296)
|++..+.++...+++++ . ...+.+++++|+++.. .+.++++.+++.|.++++|+... ......+.++.
T Consensus 103 ~~~~~~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~------~~~~~~~~~~~~g~~v~~D~~~~-~~~~~~~~~~~ 170 (279)
T cd01942 103 QIAYFYPGAMDELEPND-E----ADPDGLADIVHLSSGP------GLIELARELAAGGITVSFDPGQE-LPRLSGEELEE 170 (279)
T ss_pred EEEEecCCcccccccCC-c----hhhhcccCEEEeCCch------HHHHHHHHHHHcCCeEEEcchhh-hhhccHHHHHH
Confidence 76665666555555544 2 2457889999998742 45677777888899999998642 22223455778
Q ss_pred hcCCCcEEEcCHHHHHHHHHHcCCCCCCHHHHHHHHhcCCCCCCCCceEEEEeeCCCcEEEEECCeEEEEecccCCCccc
Q 022475 164 ALPYMDYVFGNETEARTFAKVHGWETDNVEEIALKISQWPKASGTHKRITVITQGADPVVVAEDGKVKLFPVILLPKEKL 243 (296)
Q Consensus 164 ~l~~~dv~~~n~~E~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~~~v 243 (296)
+++++|++++|.+|++.+....+ ..+.. . ..+++.+|+|+|++|++++++++.+++|++ +++++
T Consensus 171 ~l~~~dil~~n~~E~~~l~~~~~--~~~~~-----~-------~~~~~~vvvt~G~~G~~~~~~~~~~~~~~~--~~~~v 234 (279)
T cd01942 171 ILERADILFVNDYEAELLKERTG--LSEAE-----L-------ASGVRVVVVTLGPKGAIVFEDGEEVEVPAV--PAVKV 234 (279)
T ss_pred HHhhCCEEecCHHHHHHHHhhcC--CChHH-----H-------hcCCCEEEEEECCCceEEEECCceEEccCc--CcCCC
Confidence 89999999999999965432211 11111 1 245788999999999999998888888765 23489
Q ss_pred cCCCCCchhhhHHHHHHHhcCCCHHHHHHHhhHHhhhhhhhccC
Q 022475 244 VDTNGAGDAFVGGFLSQLVQEKPVEDCVRTGCYAANVVIQRSGC 287 (296)
Q Consensus 244 vd~tGaGDaf~ag~~~~l~~~~~~~~a~~~A~~~aa~~~~~~G~ 287 (296)
+|||||||+|+|||+++|++|+++++|+++|+++|+.++++.|+
T Consensus 235 vDttGAGDaf~a~~i~~l~~g~~l~~al~~a~~~Aa~~~~~~G~ 278 (279)
T cd01942 235 VDTTGAGDAFRAGFLYGLLRGYDLEESLRLGNLAASLKVERRGA 278 (279)
T ss_pred cCCCCchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcccCC
Confidence 99999999999999999999999999999999999999999986
No 33
>COG1105 FruK Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.5e-39 Score=269.86 Aligned_cols=267 Identities=18% Similarity=0.188 Sum_probs=225.0
Q ss_pred HhhhcCCCceeecCChhHHHHHHHHHhhcCCCcEEEEEeecCCchhHHHHHHHHhcCCceeEEecCCCCceeEEEEEeCC
Q 022475 3 DELASKENVEYIAGGATQNSIKVAQWMLQIPGATSYIGCIGKDKFGEEMKKNSTAAGVNVKYYEDESAPTGTCAVCVVGG 82 (296)
Q Consensus 3 ~~~~~~~~~~~~~GG~~~n~a~~~~~l~~lg~~v~~~~~vG~D~~g~~i~~~l~~~gi~~~~~~~~~~~t~~~~~~~~~~ 82 (296)
+++++..+....+||+|.|||+.|+. +|.++...|.+|.+ .|+.+.+.|++.||..++++.+ .+|+.++.+.++.
T Consensus 23 g~vNr~~~~~~~aGGKGINVa~vL~~---lG~~~~a~GflGg~-tg~~~~~~l~~~gi~~~fv~v~-g~TRinvki~~~~ 97 (310)
T COG1105 23 GEVNRVRAVTKTAGGKGINVARVLKD---LGIPVTALGFLGGF-TGEFFVALLKDEGIPDAFVEVK-GDTRINVKILDEE 97 (310)
T ss_pred cceeeeccceecCCCCceeHHHHHHH---cCCCceEEEecCCc-cHHHHHHHHHhcCCCceEEEcc-CCCeeeEEEEecC
Confidence 45677888899999999999999996 45999999999997 9999999999999999998765 5799999888754
Q ss_pred e--eceeeccccccccCccccCC-hh-hhhhhhcceEEEEecccc-ccChHHHHHHHHHHhhCCCEEEEeCCchhhhhhh
Q 022475 83 E--RSLVANLSAANCYKSEHLKR-PE-IWSIVEKAKYYYIAGFFL-TVSPESIQMVAEHAAAKNKVFMMNLSAPFICEFF 157 (296)
Q Consensus 83 ~--~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~i~g~~~-~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 157 (296)
+ .+-+.. +.+.++.+++.. .+ +...+.+.|+|+++|..+ .++++.+.++++.+++.|.++++|.+...
T Consensus 98 ~~~~Tein~--~Gp~is~~~~~~~l~~~~~~l~~~d~VvlsGSlP~g~~~d~y~~li~~~~~~g~~vilD~Sg~~----- 170 (310)
T COG1105 98 DGEETEINF--PGPEISEAELEQFLEQLKALLESDDIVVLSGSLPPGVPPDAYAELIRILRQQGAKVILDTSGEA----- 170 (310)
T ss_pred CCcEEEecC--CCCCCCHHHHHHHHHHHHHhcccCCEEEEeCCCCCCCCHHHHHHHHHHHHhcCCeEEEECChHH-----
Confidence 3 333433 335676666555 22 222377899999999774 67789999999999999999999998755
Q ss_pred hHHHHhhcC-CCcEEEcCHHHHHHHHHHcCCCCCCHHHHHHHHhcCCCCCCCCceEEEEeeCCCcEEEEECCeEEEEecc
Q 022475 158 REPQEKALP-YMDYVFGNETEARTFAKVHGWETDNVEEIALKISQWPKASGTHKRITVITQGADPVVVAEDGKVKLFPVI 236 (296)
Q Consensus 158 ~~~~~~~l~-~~dv~~~n~~E~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~vvvt~G~~G~~~~~~~~~~~~~~~ 236 (296)
+...++ ...+|+||.+|++.+++....+..|..+.++.+ ...|+++|||++|.+|+++++++..|++.++
T Consensus 171 ---L~~~L~~~P~lIKPN~~EL~~~~g~~~~~~~d~i~~a~~l------~~~g~~~ViVSlG~~Gal~~~~~~~~~a~~p 241 (310)
T COG1105 171 ---LLAALEAKPWLIKPNREELEALFGRELTTLEDVIKAAREL------LAEGIENVIVSLGADGALLVTAEGVYFASPP 241 (310)
T ss_pred ---HHHHHccCCcEEecCHHHHHHHhCCCCCChHHHHHHHHHH------HHCCCCEEEEEecCcccEEEccCCeEEEeCC
Confidence 545554 478999999999999987766566777777776 6889999999999999999999999999865
Q ss_pred cCCCccccCCCCCchhhhHHHHHHHhcCCCHHHHHHHhhHHhhhhhhhccCCCCCCC
Q 022475 237 LLPKEKLVDTNGAGDAFVGGFLSQLVQEKPVEDCVRTGCYAANVVIQRSGCTYPPKP 293 (296)
Q Consensus 237 ~~~~~~vvd~tGaGDaf~ag~~~~l~~~~~~~~a~~~A~~~aa~~~~~~G~~~~~~~ 293 (296)
+ +++++|+||||++.|||++++++++++++++++|+++|+.++++.+...++.+
T Consensus 242 ~---~~vvstVGAGDs~VAGf~~~~~~~~~~e~~l~~avA~g~a~~~~~~~~~~~~~ 295 (310)
T COG1105 242 K---VQVVSTVGAGDSMVAGFLAGLLKGKSLEEALRFAVACGAAAASQKGTGIPDLD 295 (310)
T ss_pred C---cceecCcCchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcCCCCCCCHH
Confidence 5 48999999999999999999999999999999999999999999998777665
No 34
>TIGR01231 lacC tagatose-6-phosphate kinase. This enzyme is part of the tagatose-6-phosphate pathway of lactose degradation.
Probab=100.00 E-value=4.1e-39 Score=279.80 Aligned_cols=266 Identities=15% Similarity=0.180 Sum_probs=204.6
Q ss_pred hcCCCceeecCChhHHHHHHHHHhhcCCCcEEEEEeecCCchhHHHHHHHHhcCCceeEEecCCCCceeEEEEEeCCeec
Q 022475 6 ASKENVEYIAGGATQNSIKVAQWMLQIPGATSYIGCIGKDKFGEEMKKNSTAAGVNVKYYEDESAPTGTCAVCVVGGERS 85 (296)
Q Consensus 6 ~~~~~~~~~~GG~~~n~a~~~~~l~~lg~~v~~~~~vG~D~~g~~i~~~l~~~gi~~~~~~~~~~~t~~~~~~~~~~~~~ 85 (296)
.+..+...++||++.|+|+++++ +|.++.++|.+|+| +|+.+++.|++.||+++++... ..|+.++.++.+|+|+
T Consensus 25 ~~~~~~~~~~GG~~~NvA~~la~---LG~~v~~i~~vG~~-~G~~i~~~l~~~GV~~~~~~~~-~~t~~~~~~~~~g~~~ 99 (309)
T TIGR01231 25 NRVQEVSKTAGGKGLNVTRVLAQ---VGDPVLASGFLGGK-LGEFIEKELDHSDIKHAFYKIS-GETRNCIAILHEGQQT 99 (309)
T ss_pred EeeceeeecCCccHHHHHHHHHH---cCCCeEEEEEecCh-hHHHHHHHHHHcCCceeEEECC-CCCEEeEEEEeCCCEE
Confidence 34567889999999999999997 55999999999975 9999999999999999988643 3566676666678888
Q ss_pred eeeccccccccCccccCC--hhhhhhhhcceEEEEecccc-ccChHHHHHHHHHHhhCCCEEEEeCCchhhhhhhhHHHH
Q 022475 86 LVANLSAANCYKSEHLKR--PEIWSIVEKAKYYYIAGFFL-TVSPESIQMVAEHAAAKNKVFMMNLSAPFICEFFREPQE 162 (296)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~i~g~~~-~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 162 (296)
++...++. +..+.... ....+.+.++|++|++++.. ..+...+..+++.++++|+++++|+.... .+.+.
T Consensus 100 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~-----~~~~~ 172 (309)
T TIGR01231 100 EILEQGPE--ISNQEAAGFLKHFEQLLEKVEVVAISGSLPKGLPQDYYAQIIERCQNKGVPVVLDCSGAT-----LQTVL 172 (309)
T ss_pred EEeCCCCC--CCHHHHHHHHHHHHHHhccCCEEEEECCCCCCcCHHHHHHHHHHHHhCCCeEEEECChHH-----HHHHH
Confidence 77665532 22111100 11234578899999998753 23457788999999999999999986543 12234
Q ss_pred hhcCCCcEEEcCHHHHHHHHHHcCCCCCCHHHHHHHHhcCCCCCCCCceEEEEeeCCCcEEEEECCeEEEEecccCCCcc
Q 022475 163 KALPYMDYVFGNETEARTFAKVHGWETDNVEEIALKISQWPKASGTHKRITVITQGADPVVVAEDGKVKLFPVILLPKEK 242 (296)
Q Consensus 163 ~~l~~~dv~~~n~~E~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~~~ 242 (296)
..++++|++++|.+|++.+++... ..+.+++.+.+.++ ...|++.+++|+|++|++++++++.++++++++ +
T Consensus 173 ~~~~~~dil~~n~~E~~~l~g~~~--~~~~~~~~~~~~~~---~~~g~~~vivT~G~~G~~~~~~~~~~~~~~~~v---~ 244 (309)
T TIGR01231 173 ENPAKPTVIKPNIEELSQLLNQEL--TEDLESLKQALSQP---LFSGIEWIIVSLGAQGAFAKHGHTFYKVNIPTI---S 244 (309)
T ss_pred hccCCCeEEcCCHHHHHHHhCCCC--CCCHHHHHHHHHHH---HHcCCCEEEEccCCCceEEEeCCeeEEeeCCcc---C
Confidence 456789999999999999986321 12334333333221 346788999999999999998888888877655 7
Q ss_pred ccCCCCCchhhhHHHHHHHhcCCCHHHHHHHhhHHhhhhhhhccCCCCC
Q 022475 243 LVDTNGAGDAFVGGFLSQLVQEKPVEDCVRTGCYAANVVIQRSGCTYPP 291 (296)
Q Consensus 243 vvd~tGaGDaf~ag~~~~l~~~~~~~~a~~~A~~~aa~~~~~~G~~~~~ 291 (296)
++|||||||+|+|||+++|++|+++++|+++|+++|++++++.+....+
T Consensus 245 vvDttGAGDaF~agfl~~l~~g~~~~~a~~~a~a~aa~~~~~~~~~~~~ 293 (309)
T TIGR01231 245 VVNPVGSGDSTVAGITSALLNHESDHDLLKKANTLGMLNAQEAQTGHVN 293 (309)
T ss_pred cCCCcchHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcccCCCC
Confidence 9999999999999999999999999999999999999999988774333
No 35
>PRK09513 fruK 1-phosphofructokinase; Provisional
Probab=100.00 E-value=6.6e-39 Score=278.89 Aligned_cols=269 Identities=18% Similarity=0.139 Sum_probs=209.3
Q ss_pred hhhcCCCceeecCChhHHHHHHHHHhhcCCCcEEEEEeecCCchhHHHHHHHHhcCCceeEEecCCCCceeEEEEEe-CC
Q 022475 4 ELASKENVEYIAGGATQNSIKVAQWMLQIPGATSYIGCIGKDKFGEEMKKNSTAAGVNVKYYEDESAPTGTCAVCVV-GG 82 (296)
Q Consensus 4 ~~~~~~~~~~~~GG~~~n~a~~~~~l~~lg~~v~~~~~vG~D~~g~~i~~~l~~~gi~~~~~~~~~~~t~~~~~~~~-~~ 82 (296)
+..+.....+++||++.|+|.++++ +|.++.++|.||+|.+|+. ++.|+++||++.+++.+ .+++.++.+.+ ++
T Consensus 27 ~~~~~~~~~~~~GG~~~Nva~~la~---lG~~~~~i~~vG~D~~~~~-~~~l~~~gv~~~~~~~~-~~t~~~~~~~~~~~ 101 (312)
T PRK09513 27 EVNLVKTTGLHAAGKGINVAKVLKD---LGIDVTVGGFLGKDNQDGF-QQLFSELGIANRFQVVQ-GRTRINVKLTEKDG 101 (312)
T ss_pred CeeeecceeecCCchHHHHHHHHHH---cCCCeEEEEEecCccHHHH-HHHHHHcCCCccEEECC-CCCEEEEEEEeCCC
Confidence 3455677889999999999999997 4599999999999999986 58999999998877554 46888877776 67
Q ss_pred eeceeeccccccccCccccCC--hhhhhhhhcceEEEEecccc-ccChHHHHHHHHHHhhCCCEEEEeCCchhhhhhhhH
Q 022475 83 ERSLVANLSAANCYKSEHLKR--PEIWSIVEKAKYYYIAGFFL-TVSPESIQMVAEHAAAKNKVFMMNLSAPFICEFFRE 159 (296)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~i~g~~~-~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 159 (296)
+++.+...+. .++++.... ......+.++|++|++|+.. ....+.+..+++.+++.|.++++|+....
T Consensus 102 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~d~v~~~g~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~------- 172 (312)
T PRK09513 102 EVTDFNFSGF--EVTPADWERFVTDSLSWLGQFDMVAVSGSLPRGVSPEAFTDWMTRLRSQCPCIIFDSSREA------- 172 (312)
T ss_pred cEEEEeCCCC--CCCHHHHHHHHHHHHhhcCCCCEEEEECCCCCCCCHHHHHHHHHHHHhcCCEEEEECChHH-------
Confidence 7775554332 233332221 11234578999999998754 23457778889999999999999996432
Q ss_pred HHHhhcCCCcEEEcCHHHHHHHHHHcCCCCCCHHHHHHHHhcCCCCCCCCceEEEEeeCCCcEEEEECCeEEEEecccCC
Q 022475 160 PQEKALPYMDYVFGNETEARTFAKVHGWETDNVEEIALKISQWPKASGTHKRITVITQGADPVVVAEDGKVKLFPVILLP 239 (296)
Q Consensus 160 ~~~~~l~~~dv~~~n~~E~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~ 239 (296)
..+.+..+.+++++|++|+..+++....+.++..++++.+ ...|++.+|+|+|++|++++.+++.++.++++
T Consensus 173 ~~~~~~~~~~~l~~n~~E~~~l~g~~~~~~~~~~~~~~~l------~~~g~~~vvvt~G~~G~~~~~~~~~~~~~~~~-- 244 (312)
T PRK09513 173 LVAGLKAAPWLVKPNRRELEIWAGRKLPELKDVIEAAHAL------REQGIAHVVISLGAEGALWVNASGEWIAKPPA-- 244 (312)
T ss_pred HHHHhccCCeEEcCCHHHHHHHhCCCCCCHHHHHHHHHHH------HHcCCCEEEEEeCCCCcEEEeCCceEEecCCC--
Confidence 1223445788999999999999875332223455566666 35678999999999999998888777777654
Q ss_pred CccccCCCCCchhhhHHHHHHHhcCCCHHHHHHHhhHHhhhhhhhccCCCCCCCCC
Q 022475 240 KEKLVDTNGAGDAFVGGFLSQLVQEKPVEDCVRTGCYAANVVIQRSGCTYPPKPEF 295 (296)
Q Consensus 240 ~~~vvd~tGaGDaf~ag~~~~l~~~~~~~~a~~~A~~~aa~~~~~~G~~~~~~~~~ 295 (296)
++++|||||||+|+|||+++|++|+++++|+++|+++|++++++.|...|+++|+
T Consensus 245 -~~~vDttGAGDaf~ag~i~~l~~g~~~~~a~~~A~a~Aa~~~~~~~~~~~~~~e~ 299 (312)
T PRK09513 245 -CDVVSTVGAGDSMVGGLIYGLLMRESSEHTLRLATAVSALAVSQSNVGITDRPQL 299 (312)
T ss_pred -ccccCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhCCCCCCCCHHHH
Confidence 4799999999999999999999999999999999999999999999877776654
No 36
>PRK10294 6-phosphofructokinase 2; Provisional
Probab=100.00 E-value=5.1e-39 Score=279.26 Aligned_cols=269 Identities=18% Similarity=0.190 Sum_probs=207.4
Q ss_pred hhhcCCCceeecCChhHHHHHHHHHhhcCCCcEEEEEeecCCchhHHHHHHHHhcCCceeEEecCCCCceeEEEEEe-CC
Q 022475 4 ELASKENVEYIAGGATQNSIKVAQWMLQIPGATSYIGCIGKDKFGEEMKKNSTAAGVNVKYYEDESAPTGTCAVCVV-GG 82 (296)
Q Consensus 4 ~~~~~~~~~~~~GG~~~n~a~~~~~l~~lg~~v~~~~~vG~D~~g~~i~~~l~~~gi~~~~~~~~~~~t~~~~~~~~-~~ 82 (296)
+..+.......+||++.|+|+++++ +|.++.+++.+|+ .+|+.+++.|++.||+++++...+..++..++..+ +|
T Consensus 26 ~~~~~~~~~~~~GG~~~NvA~~l~~---lG~~~~~i~~vG~-~~g~~i~~~l~~~gv~~~~~~~~~~~~~~~~i~~~~~g 101 (309)
T PRK10294 26 GKLRCSAPVFEPGGGGINVARAIAH---LGGSATAIFPAGG-ATGEHLVSLLADENVPVATVEAKDWTRQNLHVHVEASG 101 (309)
T ss_pred CeEEeccceecCCccHHHHHHHHHH---cCCCeEEEEEecC-ccHHHHHHHHHHcCCCceEEECCCCCeeeEEEEEcCCC
Confidence 4455667788899999999999997 4599999999996 69999999999999999999655444554555555 56
Q ss_pred eeceeeccccccccCccccCC-hhhhhhhhcceEEEEecccc-ccChHHHHHHHHHHhhCCCEEEEeCCchhhhhhhhHH
Q 022475 83 ERSLVANLSAANCYKSEHLKR-PEIWSIVEKAKYYYIAGFFL-TVSPESIQMVAEHAAAKNKVFMMNLSAPFICEFFREP 160 (296)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~g~~~-~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 160 (296)
+++++...+. .++.+.+.. ....+.+.+++++|++|+.. ..+.+.+..+++.+++.|+++++|+..... ...
T Consensus 102 ~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~----~~~ 175 (309)
T PRK10294 102 EQYRFVMPGA--ALNEDEFRQLEEQVLEIESGAILVISGSLPPGVKLEKLTQLISAAQKQGIRCIIDSSGDAL----SAA 175 (309)
T ss_pred cEEEEECCCC--CCCHHHHHHHHHHHHhcCCCCEEEEeCCCCCCCCHHHHHHHHHHHHHcCCeEEEeCCCHHH----HHH
Confidence 7766555443 244443322 11122467899999998654 344578889999999999999999864321 111
Q ss_pred HHhhcCCCcEEEcCHHHHHHHHHHcCCCCCCHHHHHHHHhcCCCCCCCC-ceEEEEeeCCCcEEEEECCeEEEEecccCC
Q 022475 161 QEKALPYMDYVFGNETEARTFAKVHGWETDNVEEIALKISQWPKASGTH-KRITVITQGADPVVVAEDGKVKLFPVILLP 239 (296)
Q Consensus 161 ~~~~l~~~dv~~~n~~E~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~g-~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~ 239 (296)
..++++|++++|.+|+..+++....+.++++++++.+. ..+ ++.+|+|+|++|++++++++.++++++++
T Consensus 176 --~~~~~~~~i~~n~~E~~~l~g~~~~~~~~~~~a~~~l~------~~~~~~~vvvT~G~~G~~~~~~~~~~~~~~~~v- 246 (309)
T PRK10294 176 --LAIGNIELVKPNQKELSALVNRDLTQPDDVRKAAQELV------NSGKAKRVVVSLGPQGALGVDSENCIQVVPPPV- 246 (309)
T ss_pred --HhcCCCeEECCCHHHHHHHhCCCCCCHHHHHHHHHHHH------HcCCCCEEEEecCCCceEEEcCCccEEEeCCCc-
Confidence 12467999999999999998644333334566777764 334 78899999999999998888888876654
Q ss_pred CccccCCCCCchhhhHHHHHHHhcCCCHHHHHHHhhHHhhhhhhhccCCCCCCC
Q 022475 240 KEKLVDTNGAGDAFVGGFLSQLVQEKPVEDCVRTGCYAANVVIQRSGCTYPPKP 293 (296)
Q Consensus 240 ~~~vvd~tGaGDaf~ag~~~~l~~~~~~~~a~~~A~~~aa~~~~~~G~~~~~~~ 293 (296)
+++|||||||+|+|||+++|++|+++++|+++|+++|++++++.|+..+..+
T Consensus 247 --~vvDttGAGDaf~ag~l~~l~~g~~~~~al~~a~a~aa~~v~~~G~~~~~~~ 298 (309)
T PRK10294 247 --KSQSTVGAGDSMVGAMTLKLAENASLEEMVRFGVAAGSAATLNQGTRLCSHD 298 (309)
T ss_pred --ccCCCcchHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCCCCCCCHH
Confidence 7899999999999999999999999999999999999999999999765543
No 37
>cd01939 Ketohexokinase Ketohexokinase (fructokinase, KHK) catalyzes the phosphorylation of fructose to fructose-1-phosphate (F1P), the first step in the metabolism of dietary fructose. KHK can also phosphorylate several other furanose sugars. It is found in higher eukaryotes where it is believed to function as a dimer and requires K(+) and ATP to be active. In humans, hepatic KHK deficiency causes fructosuria, a benign inborn error of metabolism.
Probab=100.00 E-value=2.5e-38 Score=272.64 Aligned_cols=250 Identities=17% Similarity=0.204 Sum_probs=193.4
Q ss_pred CCceeecCChhHHHHHHHHHhhcCCCcEEEEEeecCCchhHHHHHHHHhcCCceeEEe-cCCCCceeEEEEEe-CCeece
Q 022475 9 ENVEYIAGGATQNSIKVAQWMLQIPGATSYIGCIGKDKFGEEMKKNSTAAGVNVKYYE-DESAPTGTCAVCVV-GGERSL 86 (296)
Q Consensus 9 ~~~~~~~GG~~~n~a~~~~~l~~lg~~v~~~~~vG~D~~g~~i~~~l~~~gi~~~~~~-~~~~~t~~~~~~~~-~~~~~~ 86 (296)
.+.+.++||++.|+|.++++ +|.++.++|.+|+|.+|+.+++.|+++||+++++. .++..++.++++.+ +|+|++
T Consensus 29 ~~~~~~~GG~a~NvA~~la~---lG~~~~~~~~vG~D~~g~~~~~~l~~~gId~~~~~~~~~~~~~~~~~~~~~~g~r~~ 105 (290)
T cd01939 29 TNGRWQRGGNASNSCTVLRL---LGLSCEFLGVLSRGPVFESLLDDFQSRGIDISHCYRKDIDEPASSYIIRSRAGGRTT 105 (290)
T ss_pred eeeeEecCCCHHHHHHHHHH---cCCceEEEEeecCCHHHHHHHHHHHHcCCceeeeeEcCCCCCeeEEEEEcCCCCeEE
Confidence 34578899999999999997 45999999999999999999999999999999975 44445555666665 678887
Q ss_pred eeccccccccCccccCChhhhhhhhcceEEEEeccccccChHHHHHHHHHHhhCC-------CEEEEeCCchhhhhhhhH
Q 022475 87 VANLSAANCYKSEHLKRPEIWSIVEKAKYYYIAGFFLTVSPESIQMVAEHAAAKN-------KVFMMNLSAPFICEFFRE 159 (296)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~-------~~~~~d~~~~~~~~~~~~ 159 (296)
+...++...++.+++.. ..++++|++|++++. ++....+++.+++.+ +++++|+.... +
T Consensus 106 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~g~~----~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~------~ 171 (290)
T cd01939 106 IVNDNNLPEVTYDDFSK----IDLTQYGWIHFEGRN----PDETLRMMQHIEEHNNRRPEIRITISVEVEKPR------E 171 (290)
T ss_pred EEeCCCCCCCCHHHHhh----hhhccCCEEEEeccC----HHHHHHHHHHHHHhcCcCCCcceEEEEEeccCc------h
Confidence 77666555565555543 235789999999754 344556666666655 57888875321 3
Q ss_pred HHHhhcCCCcEEEcCHHHHHHHHHHcCCCCCCHHHHHHHHhcCCCCCCCCceEEEEeeCCCcEEEEEC-CeEEEEecccC
Q 022475 160 PQEKALPYMDYVFGNETEARTFAKVHGWETDNVEEIALKISQWPKASGTHKRITVITQGADPVVVAED-GKVKLFPVILL 238 (296)
Q Consensus 160 ~~~~~l~~~dv~~~n~~E~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~vvvt~G~~G~~~~~~-~~~~~~~~~~~ 238 (296)
.+..+++++|++++|++|++.+ + ..+.++++..+.. ...+++.+|+|+|++|++++.+ ++.+++|+++.
T Consensus 172 ~~~~~l~~~di~~~n~~~~~~~-~-----~~~~~~~~~~~~~----~~~~~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~ 241 (290)
T cd01939 172 ELLELAAYCDVVFVSKDWAQSR-G-----YKSPEECLRGEGP----RAKKAALLVCTWGDQGAGALGPDGEYVHSPAHKP 241 (290)
T ss_pred hhhhHHhhCCEEEEEhHHHHhc-C-----cCCHHHHHHhhhh----hccCCcEEEEEcccCCeEEEcCCCCEEEecCCCC
Confidence 3558899999999999988764 3 2345555443311 3457889999999999998875 56778876643
Q ss_pred CCccccCCCCCchhhhHHHHHHHhcCCC-HHHHHHHhhHHhhhhhhhccC
Q 022475 239 PKEKLVDTNGAGDAFVGGFLSQLVQEKP-VEDCVRTGCYAANVVIQRSGC 287 (296)
Q Consensus 239 ~~~~vvd~tGaGDaf~ag~~~~l~~~~~-~~~a~~~A~~~aa~~~~~~G~ 287 (296)
.++||||||||+|+|||++++++|++ +++|+++|+++|++++++.|.
T Consensus 242 --~~vvDt~GAGDsf~agfl~~l~~g~~~~~~a~~~a~a~aa~~i~~~G~ 289 (290)
T cd01939 242 --IRVVDTLGAGDTFNAAVIYALNKGPDDLSEALDFGNRVASQKCTGVGF 289 (290)
T ss_pred --CCcccCCCchHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHhhhcC
Confidence 26899999999999999999999995 999999999999999999874
No 38
>cd01164 FruK_PfkB_like 1-phosphofructokinase (FruK), minor 6-phosphofructokinase (pfkB) and related sugar kinases. FruK plays an important role in the predominant pathway for fructose utilisation.This group also contains tagatose-6-phophate kinase, an enzyme of the tagatose 6-phosphate pathway, which responsible for breakdown of the galactose moiety during lactose metabolism by bacteria such as L. lactis.
Probab=100.00 E-value=2.9e-38 Score=272.15 Aligned_cols=261 Identities=18% Similarity=0.186 Sum_probs=204.7
Q ss_pred HhhhcCCCceeecCChhHHHHHHHHHhhcCCCcEEEEEeecCCchhHHHHHHHHhcCCceeEEecCCCCceeEEEEEe-C
Q 022475 3 DELASKENVEYIAGGATQNSIKVAQWMLQIPGATSYIGCIGKDKFGEEMKKNSTAAGVNVKYYEDESAPTGTCAVCVV-G 81 (296)
Q Consensus 3 ~~~~~~~~~~~~~GG~~~n~a~~~~~l~~lg~~v~~~~~vG~D~~g~~i~~~l~~~gi~~~~~~~~~~~t~~~~~~~~-~ 81 (296)
++..+..+.+..+||.+.|+|.++++ +|.+|.++|.||+| +|+.+++.|++.||++.+++.. .+|+.++++.+ +
T Consensus 23 ~~~~~~~~~~~~~GG~~~Nva~~la~---lG~~v~~is~vG~D-~g~~i~~~l~~~gi~~~~~~~~-~~t~~~~~~~~~~ 97 (289)
T cd01164 23 GEVNRVSSTRKDAGGKGINVARVLKD---LGVEVTALGFLGGF-TGDFFEALLKEEGIPDDFVEVA-GETRINVKIKEED 97 (289)
T ss_pred CceeecccccccCCcchhHHHHHHHH---cCCCeEEEEEccCc-hhHHHHHHHHHcCCCceEEECC-CCCEEEEEEEeCC
Confidence 34556677889999999999999997 45999999999998 8999999999999999998654 45677777776 4
Q ss_pred CeeceeeccccccccCccccCC--hhhhhhhhcceEEEEecccc-ccChHHHHHHHHHHhhCCCEEEEeCCchhhhhhhh
Q 022475 82 GERSLVANLSAANCYKSEHLKR--PEIWSIVEKAKYYYIAGFFL-TVSPESIQMVAEHAAAKNKVFMMNLSAPFICEFFR 158 (296)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~i~g~~~-~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 158 (296)
++++.+...+ ..++++.+.. ....+.++++|++|+++... ..+.+....+++.+++.++++++|+....
T Consensus 98 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~i~~D~~~~~------ 169 (289)
T cd01164 98 GTETEINEPG--PEISEEELEALLEKLKALLKKGDIVVLSGSLPPGVPADFYAELVRLAREKGARVILDTSGEA------ 169 (289)
T ss_pred CCEEEEeCCC--CCCCHHHHHHHHHHHHHhcCCCCEEEEeCCCCCCcCHHHHHHHHHHHHHcCCeEEEECChHH------
Confidence 5555554333 2344443322 11223467899999998653 23447788899999999999999986432
Q ss_pred HHHHhhc-CCCcEEEcCHHHHHHHHHHcCCCCCCHHHHHHHHhcCCCCCCCCceEEEEeeCCCcEEEEECCeEEEEeccc
Q 022475 159 EPQEKAL-PYMDYVFGNETEARTFAKVHGWETDNVEEIALKISQWPKASGTHKRITVITQGADPVVVAEDGKVKLFPVIL 237 (296)
Q Consensus 159 ~~~~~~l-~~~dv~~~n~~E~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~vvvt~G~~G~~~~~~~~~~~~~~~~ 237 (296)
+.+.+ +.+|++++|++|++.+++....+.++..++++.+. ..+++.+++|+|++|++++.+++.+++++++
T Consensus 170 --~~~~~~~~~dil~~n~~E~~~l~~~~~~~~~~~~~~~~~l~------~~g~~~vivt~G~~G~~~~~~~~~~~~~~~~ 241 (289)
T cd01164 170 --LLAALAAKPFLIKPNREELEELFGRPLGDEEDVIAAARKLI------ERGAENVLVSLGADGALLVTKDGVYRASPPK 241 (289)
T ss_pred --HHHHHhcCCcEECCCHHHHHHHhCCCCCCHHHHHHHHHHHH------HcCCCEEEEecCCCCCEEEcCCcEEEecCCC
Confidence 12233 78999999999999998754333345667777773 5577899999999999999888888877655
Q ss_pred CCCccccCCCCCchhhhHHHHHHHhcCCCHHHHHHHhhHHhhhhhhhccC
Q 022475 238 LPKEKLVDTNGAGDAFVGGFLSQLVQEKPVEDCVRTGCYAANVVIQRSGC 287 (296)
Q Consensus 238 ~~~~~vvd~tGaGDaf~ag~~~~l~~~~~~~~a~~~A~~~aa~~~~~~G~ 287 (296)
+ +++|||||||+|+|||++++++|+++++|+++|+++|+.++++.|+
T Consensus 242 ~---~vvDttGAGDaf~a~~i~~l~~g~~~~~a~~~A~~~Aa~~~~~~G~ 288 (289)
T cd01164 242 V---KVVSTVGAGDSMVAGFVAGLAQGLSLEEALRLAVAAGSATAFSPGT 288 (289)
T ss_pred c---cccCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccC
Confidence 4 7999999999999999999999999999999999999999999885
No 39
>cd01947 Guanosine_kinase_like Guanosine kinase-like sugar kinases. Found in bacteria and archaea, the guanosine kinase-like group is part of the ribokinase/pfkB sugar kinase superfamily. Its oligomerization state is unknown at this time.
Probab=100.00 E-value=8.9e-38 Score=265.82 Aligned_cols=238 Identities=18% Similarity=0.321 Sum_probs=190.2
Q ss_pred hcCCCceeecCChhHHHHHHHHHhhcCCCcEEEEEeecCCchhHHHHHHHHhcCCceeEEecCCCCceeEEEEEe-CCee
Q 022475 6 ASKENVEYIAGGATQNSIKVAQWMLQIPGATSYIGCIGKDKFGEEMKKNSTAAGVNVKYYEDESAPTGTCAVCVV-GGER 84 (296)
Q Consensus 6 ~~~~~~~~~~GG~~~n~a~~~~~l~~lg~~v~~~~~vG~D~~g~~i~~~l~~~gi~~~~~~~~~~~t~~~~~~~~-~~~~ 84 (296)
.+..+....+||++.|+|.++++ +|.++.++|.||+|.+|+.+++.|++ ++++.+++..+.+|+.++++++ +|+|
T Consensus 26 ~~~~~~~~~~GG~~~Nva~~l~~---lG~~~~~i~~vG~D~~g~~i~~~l~~-~~~~~~~~~~~~~t~~~~~~~~~~g~r 101 (265)
T cd01947 26 SHSSDSRESPGGGGANVAVQLAK---LGNDVRFFSNLGRDEIGIQSLEELES-GGDKHTVAWRDKPTRKTLSFIDPNGER 101 (265)
T ss_pred eecccceeecCchHHHHHHHHHH---cCCceEEEEEecCChHHHHHHHHHHh-cCCcceEEecCCCCceEEEEECCCCcc
Confidence 34557789999999999999997 45999999999999999999999999 9999888766678999998887 6888
Q ss_pred ceeeccccccccCccccCChhhhhhhhcceEEEEeccccccChHHHHHHHHHHhhCCCEEEEeCCchhhhhhhhHHHHhh
Q 022475 85 SLVANLSAANCYKSEHLKRPEIWSIVEKAKYYYIAGFFLTVSPESIQMVAEHAAAKNKVFMMNLSAPFICEFFREPQEKA 164 (296)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 164 (296)
+++...... ++.+. +..+.++|++|+++.. ...++++.+++++ .+++|+.... ..+.++++
T Consensus 102 ~~~~~~~~~----~~~~~----~~~~~~~~~~~~~~~~------~~~~~~~~a~~~~-~~~~d~~~~~----~~~~~~~~ 162 (265)
T cd01947 102 TITVPGERL----EDDLK----WPILDEGDGVFITAAA------VDKEAIRKCRETK-LVILQVTPRV----RVDELNQA 162 (265)
T ss_pred eEEecCCCC----cccCC----HhHhccCCEEEEeccc------ccHHHHHHHHHhC-CeEeccCccc----cchhHHHH
Confidence 776543321 22222 2356889999999743 1245566677665 4556654322 12346778
Q ss_pred cCCCcEEEcCHHHHHHHHHHcCCCCCCHHHHHHHHhcCCCCCCCCceEEEEeeCCCcEEEEECCeEEEEecccCCCcccc
Q 022475 165 LPYMDYVFGNETEARTFAKVHGWETDNVEEIALKISQWPKASGTHKRITVITQGADPVVVAEDGKVKLFPVILLPKEKLV 244 (296)
Q Consensus 165 l~~~dv~~~n~~E~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~~~vv 244 (296)
++++|++++|++|+..++. .+.+ ...+++.+++|+|++|++++++++.++++++++ +++
T Consensus 163 ~~~~d~~~~n~~e~~~l~~------------~~~~------~~~~~~~viit~G~~Ga~~~~~~~~~~~~~~~~---~vv 221 (265)
T cd01947 163 LIPLDILIGSRLDPGELVV------------AEKI------AGPFPRYLIVTEGELGAILYPGGRYNHVPAKKA---KVP 221 (265)
T ss_pred hhhCCEEEeCHHHHHHhhh------------HHHH------HhccCCEEEEEeCCCCeEEEECCeeEECCCCCC---CCC
Confidence 8999999999999987752 2334 355688999999999999999888888887654 899
Q ss_pred CCCCCchhhhHHHHHHHhcCCCHHHHHHHhhHHhhhhhhhccC
Q 022475 245 DTNGAGDAFVGGFLSQLVQEKPVEDCVRTGCYAANVVIQRSGC 287 (296)
Q Consensus 245 d~tGaGDaf~ag~~~~l~~~~~~~~a~~~A~~~aa~~~~~~G~ 287 (296)
|||||||+|+|||++++++|+++++|+++|+++|+.++++.|+
T Consensus 222 DttGAGDaF~ag~l~~l~~g~~~~~al~~a~~~Aa~~v~~~G~ 264 (265)
T cd01947 222 DSTGAGDSFAAGFIYGLLKGWSIEEALELGAQCGAICVSHFGP 264 (265)
T ss_pred CCCCchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhccCC
Confidence 9999999999999999999999999999999999999999986
No 40
>cd01941 YeiC_kinase_like YeiC-like sugar kinase. Found in eukaryotes and bacteria, YeiC-like kinase is part of the ribokinase/pfkB sugar kinase superfamily. Its oligomerization state is unknown at this time.
Probab=100.00 E-value=8.6e-38 Score=269.11 Aligned_cols=255 Identities=21% Similarity=0.292 Sum_probs=198.7
Q ss_pred CceeecCChhHHHHHHHHHhhcCCCcEEEEEeecCCchhHHHHHHHHhcCCceeEEecCCCCceeEEEEEe-CCeecee-
Q 022475 10 NVEYIAGGATQNSIKVAQWMLQIPGATSYIGCIGKDKFGEEMKKNSTAAGVNVKYYEDESAPTGTCAVCVV-GGERSLV- 87 (296)
Q Consensus 10 ~~~~~~GG~~~n~a~~~~~l~~lg~~v~~~~~vG~D~~g~~i~~~l~~~gi~~~~~~~~~~~t~~~~~~~~-~~~~~~~- 87 (296)
.....+||++.|+|+++++ +|.++.++|.+|+|.+|+.+++.|++.||+++++..++.+|+.++++++ ++++++.
T Consensus 29 ~~~~~~GG~~~Nva~~l~~---lG~~~~~~~~lG~D~~g~~i~~~L~~~gI~~~~~~~~~~~t~~~~~~~~~~~~~~~~~ 105 (288)
T cd01941 29 HVKQSPGGVGRNIAENLAR---LGVSVALLSAVGDDSEGESILEESEKAGLNVRGIVFEGRSTASYTAILDKDGDLVVAL 105 (288)
T ss_pred eEEEccCcHHHHHHHHHHH---hCCCcEEEEEEecCccHHHHHHHHHHcCCccceeeeCCCCcceEEEEECCCCCEEEEE
Confidence 4567899999999999997 4599999999999999999999999999999988766778999988887 6777752
Q ss_pred eccccccccCccccCChhhhhhhhcceEEEEeccccccChHHHHHHHHHHhhCCCEEEEeCCchhhhhhhhHHHHhhcCC
Q 022475 88 ANLSAANCYKSEHLKRPEIWSIVEKAKYYYIAGFFLTVSPESIQMVAEHAAAKNKVFMMNLSAPFICEFFREPQEKALPY 167 (296)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~ 167 (296)
........++++.+. .....+.+++++++++ ..+++.+..+++.+++.+.++++|+..... ..+ +..++++
T Consensus 106 ~~~~~~~~~~~~~~~--~~~~~l~~~~~v~~~~---~~~~~~~~~~~~~a~~~~~~v~~d~~~~~~---~~~-~~~~~~~ 176 (288)
T cd01941 106 ADMDIYELLTPDFLR--KIREALKEAKPIVVDA---NLPEEALEYLLALAAKHGVPVAFEPTSAPK---LKK-LFYLLHA 176 (288)
T ss_pred echHhhhhCCHHHHH--HHHHHHhcCCEEEEeC---CCCHHHHHHHHHhhhhcCCcEEEEccchHH---hcc-chhhccc
Confidence 232222223322221 1334578999999975 345677888999999999999999854221 111 1157899
Q ss_pred CcEEEcCHHHHHHHHHHcCCCCCCHHHHHHHHhcCCCCCCCCceEEEEeeCCCcEEEEEC---CeEEEEecccCCCcccc
Q 022475 168 MDYVFGNETEARTFAKVHGWETDNVEEIALKISQWPKASGTHKRITVITQGADPVVVAED---GKVKLFPVILLPKEKLV 244 (296)
Q Consensus 168 ~dv~~~n~~E~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~vvvt~G~~G~~~~~~---~~~~~~~~~~~~~~~vv 244 (296)
+|++++|++|++.+++....+.....++++.+ ...+++.+++|+|++|++++++ +..+++|++ ++++++
T Consensus 177 ~dii~~n~~E~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~vvit~G~~Ga~~~~~~~~~~~~~~~~~--~~~~~v 248 (288)
T cd01941 177 IDLLTPNRAELEALAGALIENNEDENKAAKIL------LLPGIKNVIVTLGAKGVLLSSREGGVETKLFPAP--QPETVV 248 (288)
T ss_pred ceEEeCCHHHHHHHhCcccCCchhHHHHHHHH------HHcCCcEEEEEeCCCcEEEEecCCCceeEEecCC--CCccce
Confidence 99999999999999875432222333455555 4567889999999999999887 566777763 234899
Q ss_pred CCCCCchhhhHHHHHHHhcCCCHHHHHHHhhHHhhhhhhh
Q 022475 245 DTNGAGDAFVGGFLSQLVQEKPVEDCVRTGCYAANVVIQR 284 (296)
Q Consensus 245 d~tGaGDaf~ag~~~~l~~~~~~~~a~~~A~~~aa~~~~~ 284 (296)
|||||||+|.|||+++|++|+++++|+++|+++|+.++++
T Consensus 249 DttGAGDaf~a~~~~~l~~g~~~~~al~~a~~~Aa~~~~~ 288 (288)
T cd01941 249 NVTGAGDAFVAGLVAGLLEGMSLDDSLRFAQAAAALTLES 288 (288)
T ss_pred eCCCcHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999873
No 41
>PRK09813 fructoselysine 6-kinase; Provisional
Probab=100.00 E-value=7.2e-38 Score=265.55 Aligned_cols=240 Identities=17% Similarity=0.225 Sum_probs=191.7
Q ss_pred eeecCChhHHHHHHHHHhhcCCCcEEEEEeecCCchhHHHHHHHHhcCCceeEEecCCCCceeEEEEEeCCeeceeecc-
Q 022475 12 EYIAGGATQNSIKVAQWMLQIPGATSYIGCIGKDKFGEEMKKNSTAAGVNVKYYEDESAPTGTCAVCVVGGERSLVANL- 90 (296)
Q Consensus 12 ~~~~GG~~~n~a~~~~~l~~lg~~v~~~~~vG~D~~g~~i~~~l~~~gi~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~- 90 (296)
+.++||++.|+|+++++ +|.++.++|.||+|.+|+.+++.|++.||+++++...+.+|+.+++.+++++|++..+.
T Consensus 19 ~~~~GG~~~NvA~~l~~---lG~~~~~is~vG~D~~g~~i~~~l~~~gI~~~~~~~~~~~t~~~~~~~~~~~r~~~~~~~ 95 (260)
T PRK09813 19 KAFSGGNAVNVAVYCTR---YGIQPGCITWVGDDDYGTKLKQDLARMGVDISHVHTKHGVTAQTQVELHDNDRVFGDYTE 95 (260)
T ss_pred ccccCccHHHHHHHHHH---cCCcceEEEEecCcHHHHHHHHHHHHcCCcchheeeecCCCceEEEEEeCCcEEeeccCC
Confidence 47999999999999997 45999999999999999999999999999999986555678888888777888765443
Q ss_pred ccccccCccccCChhhhhhhhcceEEEEeccccccChHHHHHHHHHHhhCCCEEEEeCCchhhhhhhhHHHHhhcCCCcE
Q 022475 91 SAANCYKSEHLKRPEIWSIVEKAKYYYIAGFFLTVSPESIQMVAEHAAAKNKVFMMNLSAPFICEFFREPQEKALPYMDY 170 (296)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~dv 170 (296)
+....+..+.. ..+.+.+++++|++.+. ...++++.++++++++++|+.... ..+.+..+++++|+
T Consensus 96 ~~~~~~~~~~~----~~~~l~~~~~v~~~~~~------~~~~~~~~~~~~~~~v~~D~~~~~----~~~~~~~~~~~~d~ 161 (260)
T PRK09813 96 GVMADFALSEE----DYAWLAQYDIVHAAIWG------HAEDAFPQLHAAGKLTAFDFSDKW----DSPLWQTLVPHLDY 161 (260)
T ss_pred CcccccccCHH----HHHHHHhCCEEEEeccc------hHHHHHHHHHHcCCeEEEEcCCCc----cHHHHHHhCCceeE
Confidence 32222222211 22457889999996421 134667778889999999996432 12345678999999
Q ss_pred EEcCHHHHHHHHHHcCCCCCCHHHHHHHHhcCCCCCCCCceEEEEeeCCCcEEEEECCeEEEEecccCCCccccCCCCCc
Q 022475 171 VFGNETEARTFAKVHGWETDNVEEIALKISQWPKASGTHKRITVITQGADPVVVAEDGKVKLFPVILLPKEKLVDTNGAG 250 (296)
Q Consensus 171 ~~~n~~E~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~~~vvd~tGaG 250 (296)
+++|+.+. ..+.+++++.+ ...|++.+++|+|++|++++++++.+++|++++ +++||||||
T Consensus 162 ~~~~~~~~----------~~~~~~~~~~~------~~~g~~~viit~G~~Ga~~~~~~~~~~~~~~~~---~~vDttGAG 222 (260)
T PRK09813 162 AFASAPQE----------DEFLRLKMKAI------VARGAGVVIVTLGENGSIAWDGAQFWRQAPEPV---TVVDTMGAG 222 (260)
T ss_pred EEecCCcc----------hHHHHHHHHHH------HHcCCCEEEEEECCCceEEEECCEEEecCCccc---CCCCCCCch
Confidence 99876531 22456677776 356788999999999999999998888887765 799999999
Q ss_pred hhhhHHHHHHHhcCCCHHHHHHHhhHHhhhhhhhccC
Q 022475 251 DAFVGGFLSQLVQEKPVEDCVRTGCYAANVVIQRSGC 287 (296)
Q Consensus 251 Daf~ag~~~~l~~~~~~~~a~~~A~~~aa~~~~~~G~ 287 (296)
|+|+|||++++++|+++++|+++|+++|+.++++.|+
T Consensus 223 DaF~ag~i~~~~~g~~~~~al~~a~~~aa~~~~~~G~ 259 (260)
T PRK09813 223 DSFIAGFLCGWLAGMTLPQAMAQGTACAAKTIQYHGA 259 (260)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhccCC
Confidence 9999999999999999999999999999999999986
No 42
>KOG2855 consensus Ribokinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=8.9e-38 Score=261.33 Aligned_cols=270 Identities=22% Similarity=0.308 Sum_probs=211.0
Q ss_pred hhcCCCceeecCChhHHHHHHHHHhhcCCCcEEEEEeecCCchhHHHHHHHHhcCCceeEEe-cCCCCceeEEEEEe-CC
Q 022475 5 LASKENVEYIAGGATQNSIKVAQWMLQIPGATSYIGCIGKDKFGEEMKKNSTAAGVNVKYYE-DESAPTGTCAVCVV-GG 82 (296)
Q Consensus 5 ~~~~~~~~~~~GG~~~n~a~~~~~l~~lg~~v~~~~~vG~D~~g~~i~~~l~~~gi~~~~~~-~~~~~t~~~~~~~~-~~ 82 (296)
..........+||++.|+|++++| ||.++.|||.||+|.||+.+...|++++|+++++. ..+.+|+...+.+. +|
T Consensus 35 ~~~~~~f~~~~GG~~aN~Avaaar---LG~~~afiGkvGdD~fG~~l~~~L~~~~V~~~~v~~~~~~~T~~a~i~v~~dG 111 (330)
T KOG2855|consen 35 TWEPPGFKTAPGGKGANQAVAAAR---LGGRVAFIGKVGDDEFGDDLLDILKQNGVDTSGVKFDENARTACATITVSKDG 111 (330)
T ss_pred cccCCcceecCCCcchhhhhHHHh---cCcceeeeecccchhhHHHHHHHHhhCCcccccceecCCCceEEEEEEEccCC
Confidence 345667888999999999999998 55999999999999999999999999999999995 77888999888887 89
Q ss_pred eeceeeccccccccCccccCChhhhhhhhcceEEEEeccccccChHHHHHHH--HHHhhCCCEE--EEeCCchhhhhh--
Q 022475 83 ERSLVANLSAANCYKSEHLKRPEIWSIVEKAKYYYIAGFFLTVSPESIQMVA--EHAAAKNKVF--MMNLSAPFICEF-- 156 (296)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~--~~~~~~~~~~--~~d~~~~~~~~~-- 156 (296)
++.+....+++..+.+...+. ..+.+++++++++.+..+...+....++. +.+++.+..+ ++|++-+.|...
T Consensus 112 ~~~~~~v~gan~~~~~~~se~--~~~~i~~ak~~~~q~ei~~~~~~~s~~~~~~~~~~~~g~~i~~~pn~~l~l~~~~~~ 189 (330)
T KOG2855|consen 112 ENRIIFVRGANADMLPEDSEL--NLEVIKEAKVFHCQSEILIEEPMRSLHIAAVKVAKNAGPAIFYDPNLRLPLWDSLEE 189 (330)
T ss_pred ceEEEEEecCchhcCcccccc--cHHHHhhccEEEEeeecCCcchhHHHHHhhhhhhhcccccccCCCCccccccccccc
Confidence 998888878777666654222 34678999999998765433333333333 3555555433 444555555432
Q ss_pred hhHHHHhhcCCCcEEEcCHHHHHHHHHHcCCCCCCHHHHHHHHhcCCCCCCCCceEEEEeeCCCcEEEEECCeEE-EEec
Q 022475 157 FREPQEKALPYMDYVFGNETEARTFAKVHGWETDNVEEIALKISQWPKASGTHKRITVITQGADPVVVAEDGKVK-LFPV 235 (296)
Q Consensus 157 ~~~~~~~~l~~~dv~~~n~~E~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~vvvt~G~~G~~~~~~~~~~-~~~~ 235 (296)
....+..++..+|++.+..+|...+++. ...+.. .| +..+.+.+|||+|++|+.+++++..- ++|+
T Consensus 190 ne~e~~~i~~~adv~~~s~~e~~fl~~~------~~~~~~-~L------~~~~~k~viVTlG~kG~~y~tk~~~~~~v~~ 256 (330)
T KOG2855|consen 190 NESEIASIWNMADVIKVSSQELAFLTGI------EDDKIL-KL------WHMKLKLVIVTLGEKGCRYYTKDFKGSHVPA 256 (330)
T ss_pred cHHHHHHHhhhhhcccccHHHHHHhccC------ccchHH-HH------hccCCCEEEEEeCCCceEEEecCCCCCCCCC
Confidence 3444777888899999999998888753 112223 44 34445999999999999999988766 7777
Q ss_pred ccCCCccccCCCCCchhhhHHHHHHHhcC--CC---HHHHHHHhhHHhhhhhhhccC--CCCCCCCC
Q 022475 236 ILLPKEKLVDTNGAGDAFVGGFLSQLVQE--KP---VEDCVRTGCYAANVVIQRSGC--TYPPKPEF 295 (296)
Q Consensus 236 ~~~~~~~vvd~tGaGDaf~ag~~~~l~~~--~~---~~~a~~~A~~~aa~~~~~~G~--~~~~~~~~ 295 (296)
+.+ ++||||||||+|+|||+.+|.+| .+ +++++++|+++++.++++.|+ ++|.+++.
T Consensus 257 ~~V---~~VDtTGAGDsFvgal~~~L~~~~~~~~~~L~~~l~~A~a~~ai~v~~~Ga~~s~p~~~~~ 320 (330)
T KOG2855|consen 257 FKV---KAVDTTGAGDSFVGALAVQLVRGSLLPELSLEEALRFANACGAITVQRKGAIPSMPTEKEV 320 (330)
T ss_pred ccc---ccccCCCchHHHHHHHHHHHhhccccchHHHHHHHHHHHHhhhHHhhccCCCccCccHHHH
Confidence 665 79999999999999999999998 55 999999999999999999998 67876654
No 43
>PRK11316 bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase; Provisional
Probab=100.00 E-value=2.4e-35 Score=270.18 Aligned_cols=262 Identities=15% Similarity=0.166 Sum_probs=197.6
Q ss_pred CCceeecCChhHHHHHHHHHhhcCCCcEEEEEeecCCchhHHHHHHHHhcCCceeEEecCCCCceeEEEEEeCCeeceee
Q 022475 9 ENVEYIAGGATQNSIKVAQWMLQIPGATSYIGCIGKDKFGEEMKKNSTAAGVNVKYYEDESAPTGTCAVCVVGGERSLVA 88 (296)
Q Consensus 9 ~~~~~~~GG~~~n~a~~~~~l~~lg~~v~~~~~vG~D~~g~~i~~~l~~~gi~~~~~~~~~~~t~~~~~~~~~~~~~~~~ 88 (296)
......+|| +.|+|.++++ +|.++.++|.+|+|.+|+.+++.|++.||+++++..++.+|+.++++++.+...+..
T Consensus 44 ~~~~~~~GG-a~NvA~~la~---LG~~v~~i~~vG~D~~g~~i~~~L~~~gI~~~~v~~~~~~T~~~~~~~~~~~~~~~~ 119 (473)
T PRK11316 44 NQIEERPGG-AANVAMNIAS---LGAQARLVGLTGIDEAARALSKLLAAVGVKCDFVSVPTHPTITKLRVLSRNQQLIRL 119 (473)
T ss_pred eeEEecCcH-HHHHHHHHHH---cCCcEEEEEEEcCCHHHHHHHHHHHHcCCceeEEEcCCCCCCeeEEEEeCCceEEec
Confidence 356678999 6999999997 559999999999999999999999999999998876777898888887744332221
Q ss_pred ccc-cccccCccccCChhhhhhhhcceEEEEeccccccChHHHHHHHHHHhhCCCEEEEeCCchhhhhhhhHHHHhhcCC
Q 022475 89 NLS-AANCYKSEHLKRPEIWSIVEKAKYYYIAGFFLTVSPESIQMVAEHAAAKNKVFMMNLSAPFICEFFREPQEKALPY 167 (296)
Q Consensus 89 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~ 167 (296)
... .....+++.+.. ...+.+.+++++|++++.... .+.+..+++.+++.+.++++|+.... ...++.
T Consensus 120 ~~~~~~~~~~~~~l~~-~~~~~l~~~~~v~is~~~~~~-~~~~~~~~~~~k~~g~~vv~Dp~~~~---------~~~~~~ 188 (473)
T PRK11316 120 DFEEGFEGVDPQPLLE-RIEQALPSIGALVLSDYAKGA-LASVQAMIQLARKAGVPVLIDPKGTD---------FERYRG 188 (473)
T ss_pred ccccCCCchhHHHHHH-HHHHHhccCCEEEEecCCccc-hhHHHHHHHHHHhcCCeEEEeCCCCC---------ccccCC
Confidence 111 111122222111 123457889999998754322 25677889999999999999996432 134578
Q ss_pred CcEEEcCHHHHHHHHHHcCCCCCCHHHHHHHHhcCCCCCCCCceEEEEeeCCCcEEEEECCe-EEEEecccCCCccccCC
Q 022475 168 MDYVFGNETEARTFAKVHGWETDNVEEIALKISQWPKASGTHKRITVITQGADPVVVAEDGK-VKLFPVILLPKEKLVDT 246 (296)
Q Consensus 168 ~dv~~~n~~E~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~vvvt~G~~G~~~~~~~~-~~~~~~~~~~~~~vvd~ 246 (296)
+|++++|.+|++.+++.. .+.++..+.++.+. ...|++.++||+|++|++++++++ .+++|++++ +++||
T Consensus 189 ~dil~pN~~Ea~~l~g~~-~~~~~~~~~~~~l~-----~~~g~~~vvVT~G~~G~~~~~~~~~~~~~~~~~v---~vvDt 259 (473)
T PRK11316 189 ATLLTPNLSEFEAVVGKC-KDEAELVEKGMKLI-----ADYDLSALLVTRSEQGMTLLQPGKAPLHLPTQAR---EVYDV 259 (473)
T ss_pred CeEECcCHHHHHHHhCCC-CCHHHHHHHHHHHH-----HhcCCCEEEEEecCCCcEEEecCCceEEecCcCC---CCCCC
Confidence 999999999999998631 11122333444443 356788999999999999888766 477776554 89999
Q ss_pred CCCchhhhHHHHHHHhcCCCHHHHHHHhhHHhhhhhhhccCCCCCCCC
Q 022475 247 NGAGDAFVGGFLSQLVQEKPVEDCVRTGCYAANVVIQRSGCTYPPKPE 294 (296)
Q Consensus 247 tGaGDaf~ag~~~~l~~~~~~~~a~~~A~~~aa~~~~~~G~~~~~~~~ 294 (296)
|||||+|+|||+++|++|+++++|+++|+++|+.++++.|+..++.++
T Consensus 260 tGAGDaF~aa~~~~l~~g~~~~~al~~A~a~Aa~~v~~~G~~~~~~~~ 307 (473)
T PRK11316 260 TGAGDTVISVLAAALAAGNSLEEACALANAAAGVVVGKLGTSTVSPIE 307 (473)
T ss_pred CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcccCCCccCCHHH
Confidence 999999999999999999999999999999999999999986665544
No 44
>cd01946 ribokinase_group_C Ribokinase-like subgroup C. Found only in bacteria, this subgroup is part of the ribokinase/pfkB superfamily. Its oligomerization state is unknown at this time.
Probab=100.00 E-value=7.5e-35 Score=249.36 Aligned_cols=247 Identities=22% Similarity=0.292 Sum_probs=190.1
Q ss_pred ceeecCChhHHHHHHHHHhhcCCCcEEEEEeecCCchhHHHHHHHHhcCCceeEEe-cCCCCceeEEEEE--e-CCeece
Q 022475 11 VEYIAGGATQNSIKVAQWMLQIPGATSYIGCIGKDKFGEEMKKNSTAAGVNVKYYE-DESAPTGTCAVCV--V-GGERSL 86 (296)
Q Consensus 11 ~~~~~GG~~~n~a~~~~~l~~lg~~v~~~~~vG~D~~g~~i~~~l~~~gi~~~~~~-~~~~~t~~~~~~~--~-~~~~~~ 86 (296)
....+||++.|+|.++++| | ++.++|.+|+| +|+.+++.|+++||++++++ .++.+|....... + ++++++
T Consensus 20 ~~~~~GG~a~N~a~~la~l---g-~v~~i~~vG~D-~g~~~~~~l~~~gi~~~~v~~~~~~~t~~~~~~~~~~~~~~~~~ 94 (277)
T cd01946 20 VDKALGGSATYFSLSASYF---T-DVRLVGVVGED-FPEEDYKLLNSHNIVTLGLLSKEDGKTFHWAGRYHYDLNEADTL 94 (277)
T ss_pred eeeccCchHHHHHHHHHHh---c-cceeEEeccCc-ChHHHHHHHHhccCcceeEEEecCCCeEEEeeEehhhcccccch
Confidence 4567999999999999983 3 59999999999 89999999999999999985 4545552211111 1 222222
Q ss_pred eeccccccccCccccCChhhhhhhhcceEEEEeccccccChHHHHHHHHHHhhCCCEEEEeCCchhhhhhhhHHHHhhcC
Q 022475 87 VANLSAANCYKSEHLKRPEIWSIVEKAKYYYIAGFFLTVSPESIQMVAEHAAAKNKVFMMNLSAPFICEFFREPQEKALP 166 (296)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~ 166 (296)
....+....+.++ ..+.+.+++++|+++ ++++....+++.+++. .++++|+. ..|.....+.++++++
T Consensus 95 ~~~~~~~~~~~~~------~~~~~~~~~~v~~~~----~~~~~~~~~~~~~~~~-~~v~~D~~-~~~~~~~~~~~~~~l~ 162 (277)
T cd01946 95 DTDLNVFADFDPQ------LPEHYKDSEFVFLGN----IAPELQREVLEQVKDP-KLVVMDTM-NFWISIKPEKLKKVLA 162 (277)
T ss_pred hhhhhHHhhcCCC------ChHHhhcCCEEEECC----CCHHHHHHHHHHHHhC-CEEEEccH-HHhhhhhHHHHHHHhc
Confidence 2221111122111 124478899999974 4567778888888776 78999983 4564445566888999
Q ss_pred CCcEEEcCHHHHHHHHHHcCCCCCCHHHHHHHHhcCCCCCCCCceEEEEeeCCCcEEEEECCeEEEEecccCCCccccCC
Q 022475 167 YMDYVFGNETEARTFAKVHGWETDNVEEIALKISQWPKASGTHKRITVITQGADPVVVAEDGKVKLFPVILLPKEKLVDT 246 (296)
Q Consensus 167 ~~dv~~~n~~E~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~~~vvd~ 246 (296)
++|++++|.+|++.+++ .++++++++.+ ...|++.+++|+|.+|+.++++++.+++|+++++ +++||
T Consensus 163 ~~d~~~~n~~E~~~l~g-----~~~~~~~~~~l------~~~g~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~--~~vDt 229 (277)
T cd01946 163 KVDVVIINDGEARQLTG-----AANLVKAARLI------LAMGPKALIIKRGEYGALLFTDDGYFAAPAYPLE--SVFDP 229 (277)
T ss_pred cCCEEeCCHHHHHHHhC-----CchHHHHHHHH------HHcCCCEEEEecCCCcEEEEECCceEEcCCcccC--ccCCC
Confidence 99999999999999985 34677888877 4577899999999999999998888888776542 48999
Q ss_pred CCCchhhhHHHHHHHhcCC-----CHHHHHHHhhHHhhhhhhhccC
Q 022475 247 NGAGDAFVGGFLSQLVQEK-----PVEDCVRTGCYAANVVIQRSGC 287 (296)
Q Consensus 247 tGaGDaf~ag~~~~l~~~~-----~~~~a~~~A~~~aa~~~~~~G~ 287 (296)
|||||+|+|||+++|++++ ++++|+++|+++|++++++.|+
T Consensus 230 tGAGDaF~Agfl~~l~~~~~~~~~~~~~a~~~a~~~aa~~~~~~G~ 275 (277)
T cd01946 230 TGAGDTFAGGFIGYLASQKDTSEANMRRAIIYGSAMASFCVEDFGT 275 (277)
T ss_pred CCchHHHHHHHHHHHHhCCCcchhhHHHHHHHhHHHHhhhhhhcCC
Confidence 9999999999999999874 6999999999999999999986
No 45
>cd01937 ribokinase_group_D Ribokinase-like subgroup D. Found in bacteria and archaea, this subgroup is part of the ribokinase/pfkB superfamily. Its oligomerization state is unknown at this time.
Probab=100.00 E-value=7.1e-34 Score=240.37 Aligned_cols=241 Identities=17% Similarity=0.140 Sum_probs=183.1
Q ss_pred HhhhcCCCceeecCChhHHHHHHHHHhhcCCCcEEEEEeecCCchhHHHHHHHHhcCCceeEEecCCCCceeEEEEEe-C
Q 022475 3 DELASKENVEYIAGGATQNSIKVAQWMLQIPGATSYIGCIGKDKFGEEMKKNSTAAGVNVKYYEDESAPTGTCAVCVV-G 81 (296)
Q Consensus 3 ~~~~~~~~~~~~~GG~~~n~a~~~~~l~~lg~~v~~~~~vG~D~~g~~i~~~l~~~gi~~~~~~~~~~~t~~~~~~~~-~ 81 (296)
|.+....+....+||++.|+|.++++ +|.++.++|.+|+|.+|+ ++.|++.||++..+ ....|+.+++.++ +
T Consensus 11 D~~~~~~~~~~~~GG~~~Nva~~la~---lG~~~~~i~~vG~D~~g~--~~~l~~~gv~~~~~--~~~~t~~~~~~~~~~ 83 (254)
T cd01937 11 DEIVTNGSGVVKPGGPATYASLTLSR---LGLTVKLVTKVGRDYPDK--WSDLFDNGIEVISL--LSTETTTFELNYTNE 83 (254)
T ss_pred EEEecCCceEEecCchhhhHHHHHHH---hCCCeEEEEeeCCCchHH--HHHHHHCCcEEEEe--cCCCeEEEEEEecCC
Confidence 34444456678999999999999997 459999999999999998 68899999997544 3335666666666 5
Q ss_pred CeeceeeccccccccCccccCChhhhhhhhcceEEEEeccccccChHHHHHHHHHHhhCCCEEEEeCCchhhhh--hhhH
Q 022475 82 GERSLVANLSAANCYKSEHLKRPEIWSIVEKAKYYYIAGFFLTVSPESIQMVAEHAAAKNKVFMMNLSAPFICE--FFRE 159 (296)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~--~~~~ 159 (296)
++++++...+........ . ..+.++|++|++++ +++....+.+.+ .++++|+... |.. ....
T Consensus 84 ~~~~~~~~~~~~~~~~~~---~----~~~~~~~~~~~~~~----~~~~~~~~~~~~----~~v~~D~~~~-~~~~~~~~~ 147 (254)
T cd01937 84 GRTRTLLAKCAAIPDTES---P----LSTITAEIVILGPV----PEEISPSLFRKF----AFISLDAQGF-LRRANQEKL 147 (254)
T ss_pred CCeeeeeccccCCccccc---c----cccCcccEEEECCC----cchhcHHHHhhh----hheeEccccc-eeeccccch
Confidence 677766554433222111 1 23678999999853 344444444332 6788888532 221 1222
Q ss_pred HHHhhcCCCcEEEcCHHHHHHHHHHcCCCCCCHHHHHHHHhcCCCCCCCCceEEEEeeCCCcEEEEECCeEEEEecccCC
Q 022475 160 PQEKALPYMDYVFGNETEARTFAKVHGWETDNVEEIALKISQWPKASGTHKRITVITQGADPVVVAEDGKVKLFPVILLP 239 (296)
Q Consensus 160 ~~~~~l~~~dv~~~n~~E~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~ 239 (296)
.++++++++|++++|++|++.+ .+.+++++.+ ...|++.+++|+|++|++++++++.+++++++.
T Consensus 148 ~~~~~l~~~di~~~n~~E~~~~--------~~~~~~~~~l------~~~g~~~vvvt~g~~g~~~~~~~~~~~~~~~~~- 212 (254)
T cd01937 148 IKCVILKLHDVLKLSRVEAEVI--------STPTELARLI------KETGVKEIIVTDGEEGGYIFDGNGKYTIPASKK- 212 (254)
T ss_pred HHHhhcccCcEEEEcHHHHhhc--------CCHHHHHHHH------HHcCCCEEEEeeCCcceEEEECCccEEccccCc-
Confidence 3578899999999999999872 3577788777 456789999999999999999888888877654
Q ss_pred CccccCCCCCchhhhHHHHHHHhcCCCHHHHHHHhhHHhhhhhh
Q 022475 240 KEKLVDTNGAGDAFVGGFLSQLVQEKPVEDCVRTGCYAANVVIQ 283 (296)
Q Consensus 240 ~~~vvd~tGaGDaf~ag~~~~l~~~~~~~~a~~~A~~~aa~~~~ 283 (296)
+++|||||||+|+|||++++.+|+++++|+++|+++|+.+++
T Consensus 213 --~~vdt~GAGD~f~a~~~~~l~~g~~~~~a~~~a~~~aa~~i~ 254 (254)
T cd01937 213 --DVVDPTGAGDVFLAAFLYSRLSGKDIKEAAEFAAAAAAKFIE 254 (254)
T ss_pred --eeccCCCchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhC
Confidence 789999999999999999999999999999999999999874
No 46
>PLN02630 pfkB-type carbohydrate kinase family protein
Probab=100.00 E-value=5e-33 Score=241.67 Aligned_cols=233 Identities=19% Similarity=0.236 Sum_probs=186.7
Q ss_pred ceeecCChhHHHHHHHHHhhcCCCcEEEEEeecCCchhHHHHHHHHhcCCceeEEecCCCCceeEEEEEeCC------ee
Q 022475 11 VEYIAGGATQNSIKVAQWMLQIPGATSYIGCIGKDKFGEEMKKNSTAAGVNVKYYEDESAPTGTCAVCVVGG------ER 84 (296)
Q Consensus 11 ~~~~~GG~~~n~a~~~~~l~~lg~~v~~~~~vG~D~~g~~i~~~l~~~gi~~~~~~~~~~~t~~~~~~~~~~------~~ 84 (296)
....+||+++|+|.++++ +|.++.++|.+|+|.. .+|+...+..++.+|+.++.+++++ ++
T Consensus 32 ~~~~~GG~a~N~A~alar---LG~~~~lis~VG~D~~----------~~v~~~~~~~~~~~T~~~~~~~~~g~~~~~~e~ 98 (335)
T PLN02630 32 TAESLGGAASFISNVLDA---LSVECELVSKVGPDFL----------YQVSHPPIVIPDSKTTEFHADFDQGIDGNGHED 98 (335)
T ss_pred EEEecCcHHHHHHHHHHH---cCCceEEEEEecCCcc----------ccccccceecCCCCceEEEEEEcCCcccCCCCe
Confidence 447899999999999998 5599999999999942 3677665545677899988877653 77
Q ss_pred ceeeccccccccCccccCChhhhhhhhcceEEEEeccccccChHHHHHHHHHHhh-----CCCEEEEeCCchhh--hhhh
Q 022475 85 SLVANLSAANCYKSEHLKRPEIWSIVEKAKYYYIAGFFLTVSPESIQMVAEHAAA-----KNKVFMMNLSAPFI--CEFF 157 (296)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~-----~~~~~~~d~~~~~~--~~~~ 157 (296)
+++...+++..+++++++. ..+..++++++.+ .++++....+++.++. +++.+++|+..... ....
T Consensus 99 ~i~~~~ga~~~l~~~di~~----~~~~~~~~~~l~~---ei~~e~~~~~~~~a~~v~~D~~g~~~~~Dp~~~~~~~~~~~ 171 (335)
T PLN02630 99 RVLKRVCACDPIEPSDIPD----MRYEFGMAVGVAG---EILPETLERMVEICDVVVVDIQALIRVFDPVDGTVKLVKLE 171 (335)
T ss_pred EEEEeccccCCCChHHCCH----HHhcccceeeecC---CCcHHHHHHHHHHhhhheeccCceEEecCCcccccccchhh
Confidence 8888889999999988864 2366778888865 4557888889998887 78889999864210 0111
Q ss_pred hHHHHhhcCCCcEEEcCHHHHHHHHHHcCCCCCCHHHHHHHHhcCCCCCCCCceEEEEeeCCCcEEEEECCeEEEEeccc
Q 022475 158 REPQEKALPYMDYVFGNETEARTFAKVHGWETDNVEEIALKISQWPKASGTHKRITVITQGADPVVVAEDGKVKLFPVIL 237 (296)
Q Consensus 158 ~~~~~~~l~~~dv~~~n~~E~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~vvvt~G~~G~~~~~~~~~~~~~~~~ 237 (296)
...+.++++++|++++|++|+..+ +.++ +. +. ..+++|+|++|++++++++.+++|+++
T Consensus 172 ~~~~~~~L~~iDil~~ne~Ea~~l---------~~~~----~~------~~--~~vvvt~G~~G~~~~~~~~~~~~~~~~ 230 (335)
T PLN02630 172 ETGFYDMLPRIGFLKASSEEALFI---------DVEE----VR------QK--CCVIVTNGKKGCRIYWKDGEMRVPPFP 230 (335)
T ss_pred HHHHHHHHHhCCEEEecHHHHhhc---------CHHH----Hc------cC--CEEEEEECCCceEEEECCeeEEeCCCC
Confidence 123568899999999999999864 2222 21 11 379999999999999988888888766
Q ss_pred CCCccccCCCCCchhhhHHHHHHHhcCCCHHHHHHHhhHHhhhhhhhccC
Q 022475 238 LPKEKLVDTNGAGDAFVGGFLSQLVQEKPVEDCVRTGCYAANVVIQRSGC 287 (296)
Q Consensus 238 ~~~~~vvd~tGaGDaf~ag~~~~l~~~~~~~~a~~~A~~~aa~~~~~~G~ 287 (296)
+ +++|||||||+|+|||++++++|+++++|+++|+++|+.++++.|.
T Consensus 231 v---~~vDttGAGDaF~agfi~~l~~g~~~~~a~~~A~a~aa~~v~~~G~ 277 (335)
T PLN02630 231 A---IQVDPTGAGDSFLGGFVAGLVQGLAVPDAALLGNYFGSLAVEQVGI 277 (335)
T ss_pred C---CCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCcCCC
Confidence 5 7899999999999999999999999999999999999999999996
No 47
>COG2870 RfaE ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.97 E-value=1.7e-30 Score=219.46 Aligned_cols=258 Identities=17% Similarity=0.206 Sum_probs=206.5
Q ss_pred cCCCceeecCChhHHHHHHHHHhhcCCCcEEEEEeecCCchhHHHHHHHHhcCCceeEEecCCCCceeEEEEEeCCeece
Q 022475 7 SKENVEYIAGGATQNSIKVAQWMLQIPGATSYIGCIGKDKFGEEMKKNSTAAGVNVKYYEDESAPTGTCAVCVVGGERSL 86 (296)
Q Consensus 7 ~~~~~~~~~GG~~~n~a~~~~~l~~lg~~v~~~~~vG~D~~g~~i~~~l~~~gi~~~~~~~~~~~t~~~~~~~~~~~~~~ 86 (296)
+..+....+|| +.|||..++. ||.++.++|.+|+|..|+.+.+.|...+|+..+++.+.++|.....++..++..+
T Consensus 42 ~v~~e~~rlGG-AaNVa~Nias---LGa~a~l~GvvG~Deag~~L~~~l~~~~i~~~l~~~~~r~T~~K~Rv~s~nQQll 117 (467)
T COG2870 42 KVEKEEERLGG-AANVAKNIAS---LGANAYLVGVVGKDEAGKALIELLKANGIDSDLLRDKNRPTIVKLRVLSRNQQLL 117 (467)
T ss_pred Eeccccccccc-HHHHHHHHHH---cCCCEEEEEeeccchhHHHHHHHHHhcCcccceEeecCCCceeeeeeecccceEE
Confidence 45567778999 8899988775 6699999999999999999999999999998888899999999888887555443
Q ss_pred eeccccccccCccccCC--hhhhhhhhcceEEEEeccccccChHHHHHHHHHHhhCCCEEEEeCCchhhhhhhhHHHHhh
Q 022475 87 VANLSAANCYKSEHLKR--PEIWSIVEKAKYYYIAGFFLTVSPESIQMVAEHAAAKNKVFMMNLSAPFICEFFREPQEKA 164 (296)
Q Consensus 87 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 164 (296)
-.+....... +.... ..+.+.+.+.|.+++|.|.-+.-.. .+.+++.|++.|+++.+||.+... ..
T Consensus 118 RvD~Ee~~~~--~~~~~ll~~~~~~l~~~~~vVLSDY~KG~L~~-~q~~I~~ar~~~~pVLvDPKg~Df---------~~ 185 (467)
T COG2870 118 RLDFEEKFPI--EDENKLLEKIKNALKSFDALVLSDYAKGVLTN-VQKMIDLAREAGIPVLVDPKGKDF---------EK 185 (467)
T ss_pred EecccccCcc--hhHHHHHHHHHHHhhcCCEEEEeccccccchh-HHHHHHHHHHcCCcEEECCCCcch---------hh
Confidence 2222111111 11111 2344567899999999998543333 789999999999999999976541 34
Q ss_pred cCCCcEEEcCHHHHHHHHHHcCCCCCCHHHHHHHHhcCCCCCCCCceEEEEeeCCCcEEEEECCeEEEEecccCCCcccc
Q 022475 165 LPYMDYVFGNETEARTFAKVHGWETDNVEEIALKISQWPKASGTHKRITVITQGADPVVVAEDGKVKLFPVILLPKEKLV 244 (296)
Q Consensus 165 l~~~dv~~~n~~E~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~~~vv 244 (296)
+..+.+++||..|++...+.+..+ ++..+....|. ...+...+++|++++|..+++.++..|+|+..- ++.
T Consensus 186 Y~GAtLiTPN~~E~~~~vg~~~~e-~el~~~g~kL~-----~~~~L~alLvTRsE~GMtL~~~~~~~h~pt~Ak---EVy 256 (467)
T COG2870 186 YRGATLITPNLKEFEEAVGKCKSE-EELEERGQKLK-----EELDLSALLVTRSEKGMTLFQEGKPLHFPARAK---EVY 256 (467)
T ss_pred hCCCeecCCCHHHHHHHHcccccH-HHHHHHHHHHH-----HhhCcceEEEEeccCCceeecCCcccccchhhe---eee
Confidence 677999999999999998876543 34555555554 456678999999999999999888888887654 899
Q ss_pred CCCCCchhhhHHHHHHHhcCCCHHHHHHHhhHHhhhhhhhccCCC
Q 022475 245 DTNGAGDAFVGGFLSQLVQEKPVEDCVRTGCYAANVVIQRSGCTY 289 (296)
Q Consensus 245 d~tGaGDaf~ag~~~~l~~~~~~~~a~~~A~~~aa~~~~~~G~~~ 289 (296)
|.|||||+-+|.++.+|+.|.++++|+.+||++|+.++.+.|...
T Consensus 257 DVTGAGDTVIa~la~~laaG~s~~eAc~lAN~AagiVVgKlGTat 301 (467)
T COG2870 257 DVTGAGDTVIAVLAAALAAGASLEEACELANAAAGIVVGKLGTAT 301 (467)
T ss_pred eccCCCchHHHHHHHHHHcCCCHHHHHHHhhhhcceEEeecccee
Confidence 999999999999999999999999999999999999999999843
No 48
>KOG2947 consensus Carbohydrate kinase [Carbohydrate transport and metabolism]
Probab=99.97 E-value=9.4e-30 Score=200.85 Aligned_cols=257 Identities=16% Similarity=0.212 Sum_probs=204.1
Q ss_pred CCceeecCChhHHHHHHHHHhhcCCCcEEEEEeecCCchhHHHHHHHHhcCCceeEEecCCCCceeEEEEEe--CCeece
Q 022475 9 ENVEYIAGGATQNSIKVAQWMLQIPGATSYIGCIGKDKFGEEMKKNSTAAGVNVKYYEDESAPTGTCAVCVV--GGERSL 86 (296)
Q Consensus 9 ~~~~~~~GG~~~n~a~~~~~l~~lg~~v~~~~~vG~D~~g~~i~~~l~~~gi~~~~~~~~~~~t~~~~~~~~--~~~~~~ 86 (296)
.+....-||.+.|++-+++. + |.+|.|+|.+.+....+.+++.|++.||++++....+...+...++++ .+.|++
T Consensus 34 ~~g~wqRgG~asNvcTvlrl-L--G~~cef~Gvlsr~~~f~~lLddl~~rgIdishcpftd~~pp~ssiI~~r~s~trTi 110 (308)
T KOG2947|consen 34 LSGRWQRGGNASNVCTVLRL-L--GAPCEFFGVLSRGHVFRFLLDDLRRRGIDISHCPFTDHSPPFSSIIINRNSGTRTI 110 (308)
T ss_pred hhhhhhcCCCcchHHHHHHH-h--CCchheeeecccchhHHHHHHHHHhcCCCcccCccccCCCCcceEEEecCCCceEE
Confidence 34556789999999999995 4 499999999999999999999999999999999766777778777776 578899
Q ss_pred eeccccccccCccccCChhhhhhhhcceEEEEeccccccChHHHHHHHHHHhh----CCCEEEEeCCchhhhhhhhHHHH
Q 022475 87 VANLSAANCYKSEHLKRPEIWSIVEKAKYYYIAGFFLTVSPESIQMVAEHAAA----KNKVFMMNLSAPFICEFFREPQE 162 (296)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~----~~~~~~~d~~~~~~~~~~~~~~~ 162 (296)
+......+.++.++... -.+.+..|+||.+.+....-.+++.+.+.-.+ .++.+.+|+..+. +.+.
T Consensus 111 l~~dks~p~vT~~dF~k----vdl~qy~WihfE~Rnp~etlkM~~~I~~~N~r~pe~qrI~vSvd~en~r------eq~~ 180 (308)
T KOG2947|consen 111 LYCDKSLPDVTATDFEK----VDLTQYGWIHFEARNPSETLKMLQRIDAHNTRQPEEQRIRVSVDVENPR------EQLF 180 (308)
T ss_pred EEecCCCccccHHHhhh----cccceeeeEEEecCChHHHHHHHHHHHHhhcCCCccceEEEEEEecCcH------HHHH
Confidence 98888888888887765 34788999999975432222344444433222 3467888886654 6677
Q ss_pred hhcCCCcEEEcCHHHHHHHHHHcCCCCCCHHHHHHHHhcCCCCCCCCceEEEEeeCCCcEEEE-ECCeEEEEecccCCCc
Q 022475 163 KALPYMDYVFGNETEARTFAKVHGWETDNVEEIALKISQWPKASGTHKRITVITQGADPVVVA-EDGKVKLFPVILLPKE 241 (296)
Q Consensus 163 ~~l~~~dv~~~n~~E~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~vvvt~G~~G~~~~-~~~~~~~~~~~~~~~~ 241 (296)
.+....|+++++++-++.+. ..++++++..+..-.+ .+...+.+|+.+++.|+-.. .+|+.+++++++.|
T Consensus 181 ~l~am~DyVf~sK~~a~~~g------fks~rea~~~l~~r~~-~~~pkpv~I~~w~~eGA~~l~adg~yfev~a~~pp-- 251 (308)
T KOG2947|consen 181 QLFAMCDYVFVSKDVAKHLG------FKSPREACEGLYGRVP-KGKPKPVLICPWASEGAGALGADGKYFEVDAFKPP-- 251 (308)
T ss_pred HHhhcccEEEEEHHHHhhhc------cCCHHHHHHHHHhhcc-cCCCCcEEEeccccccccccCCCCCEEecCCCCCc--
Confidence 88999999999999888775 5678887776642221 34445678899999997655 56678888888766
Q ss_pred cccCCCCCchhhhHHHHHH-HhcCCCHHHHHHHhhHHhhhhhhhccC
Q 022475 242 KLVDTNGAGDAFVGGFLSQ-LVQEKPVEDCVRTGCYAANVVIQRSGC 287 (296)
Q Consensus 242 ~vvd~tGaGDaf~ag~~~~-l~~~~~~~~a~~~A~~~aa~~~~~~G~ 287 (296)
++||+.|+||+|.|||+|+ +.++.++.||++||+++|+.++...|.
T Consensus 252 kvVD~lg~~DtF~A~vIyA~lk~~r~l~eAvdfg~rvas~Kl~g~Gf 298 (308)
T KOG2947|consen 252 KVVDTLGAGDTFNAGVIYALLKQGRSLAEAVDFGNRVASKKLGGQGF 298 (308)
T ss_pred cceeeccCCCcchHHHHHHHHHhhhhHHHHHHHHHHhhhcccccccc
Confidence 8999999999999999999 556899999999999999999998886
No 49
>cd00287 ribokinase_pfkB_like ribokinase/pfkB superfamily: Kinases that accept a wide variety of substrates, including carbohydrates and aromatic small molecules, all are phosphorylated at a hydroxyl group. The superfamily includes ribokinase, fructokinase, ketohexokinase, 2-dehydro-3-deoxygluconokinase, 1-phosphofructokinase, the minor 6-phosphofructokinase (PfkB), inosine-guanosine kinase, and adenosine kinase. Even though there is a high degree of structural conservation within this superfamily, their multimerization level varies widely, monomeric (e.g. adenosine kinase), dimeric (e.g. ribokinase), and trimeric (e.g THZ kinase).
Probab=99.93 E-value=2.9e-25 Score=180.34 Aligned_cols=172 Identities=26% Similarity=0.335 Sum_probs=135.9
Q ss_pred hhhcCCCceeecCChhHHHHHHHHHhhcCCCcEEEEEeecCCchhHHHHHHHHhcCCceeEEecCCCCceeEEEEEeCCe
Q 022475 4 ELASKENVEYIAGGATQNSIKVAQWMLQIPGATSYIGCIGKDKFGEEMKKNSTAAGVNVKYYEDESAPTGTCAVCVVGGE 83 (296)
Q Consensus 4 ~~~~~~~~~~~~GG~~~n~a~~~~~l~~lg~~v~~~~~vG~D~~g~~i~~~l~~~gi~~~~~~~~~~~t~~~~~~~~~~~ 83 (296)
+..+..+.+..+||+|.|+|.++++ +|.++.++|
T Consensus 24 ~~~~~~~~~~~~GG~~~n~a~~l~~---LG~~~~~~~------------------------------------------- 57 (196)
T cd00287 24 GLVRPGDTEERAGGGAANVAVALAR---LGVSVTLVG------------------------------------------- 57 (196)
T ss_pred CeEEeceeeecCCCcHHHHHHHHHH---CCCcEEEEE-------------------------------------------
Confidence 3455667788999999999999997 458999999
Q ss_pred eceeeccccccccCccccCChhhhhhhhcceEEEEeccccccChHHHHHHHHHHhhCCCEEEEeCCchhhhhhhhHHHHh
Q 022475 84 RSLVANLSAANCYKSEHLKRPEIWSIVEKAKYYYIAGFFLTVSPESIQMVAEHAAAKNKVFMMNLSAPFICEFFREPQEK 163 (296)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 163 (296)
+|++|+++..+. .+.+..+++.+++.++++++|+........ .+.+++
T Consensus 58 -----------------------------~~~v~i~~~~~~--~~~~~~~~~~~~~~~~~v~~D~~~~~~~~~-~~~~~~ 105 (196)
T cd00287 58 -----------------------------ADAVVISGLSPA--PEAVLDALEEARRRGVPVVLDPGPRAVRLD-GEELEK 105 (196)
T ss_pred -----------------------------ccEEEEecccCc--HHHHHHHHHHHHHcCCeEEEeCCccccccc-cchHHH
Confidence 789999975432 367788899999999999999975432211 222667
Q ss_pred hcCCCcEEEcCHHHHHHHHHHcCCCCCCHHHHHHHHhcCCCCCCCCceEEEEeeCCCcEEEEE-CCeEEEEecccCCCcc
Q 022475 164 ALPYMDYVFGNETEARTFAKVHGWETDNVEEIALKISQWPKASGTHKRITVITQGADPVVVAE-DGKVKLFPVILLPKEK 242 (296)
Q Consensus 164 ~l~~~dv~~~n~~E~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~vvvt~G~~G~~~~~-~~~~~~~~~~~~~~~~ 242 (296)
+++++|++++|.+|++.+++....+.++..+.++.+ ...+++.+++|+|++|+++++ ++..+++|+++. +
T Consensus 106 ~~~~~dvl~~n~~E~~~l~~~~~~~~~~~~~~~~~l------~~~g~~~vvvt~G~~g~~~~~~~~~~~~~~~~~~---~ 176 (196)
T cd00287 106 LLPGVDILTPNEEEAEALTGRRDLEVKEAAEAAALL------LSKGPKVVIVTLGEKGAIVATRGGTEVHVPAFPV---K 176 (196)
T ss_pred HHhhCCEECCCHHHHHHHhCCCCCChHHHHHHHHHH------HhcCCCEEEEEECCCccEEEecCCceEEcCCccC---C
Confidence 889999999999999999875433233344666666 466788999999999999998 777777776543 7
Q ss_pred ccCCCCCchhhhHHHHHHHh
Q 022475 243 LVDTNGAGDAFVGGFLSQLV 262 (296)
Q Consensus 243 vvd~tGaGDaf~ag~~~~l~ 262 (296)
++|||||||+|+|||+++++
T Consensus 177 ~vdt~GAGD~f~ag~~~~l~ 196 (196)
T cd00287 177 VVDTTGAGDAFLAALAAGLA 196 (196)
T ss_pred cccCCCchHHHHHHHHHHhC
Confidence 99999999999999999974
No 50
>cd01173 pyridoxal_pyridoxamine_kinase Pyridoxal kinase plays a key role in the synthesis of the active coenzyme pyridoxal-5'-phosphate (PLP), by catalyzing the phosphorylation of the precursor vitamin B6 in the presence of Zn2+ and ATP. Mammals are unable to synthesize PLP de novo and require its precursors in the form of vitamin B6 (pyridoxal, pyridoxine, and pyridoxamine) from their diet. Pyridoxal kinase encoding genes are also found in many other species including yeast and bacteria.
Probab=99.83 E-value=9.5e-20 Score=153.96 Aligned_cols=164 Identities=13% Similarity=0.154 Sum_probs=123.0
Q ss_pred hcceEEEEecccc-ccChHHHHHHHHHHhhC--CCEEEEeCC----chhh--hhhhhHHHHhhcC-CCcEEEcCHHHHHH
Q 022475 111 EKAKYYYIAGFFL-TVSPESIQMVAEHAAAK--NKVFMMNLS----APFI--CEFFREPQEKALP-YMDYVFGNETEART 180 (296)
Q Consensus 111 ~~~~~~~i~g~~~-~~~~~~~~~~~~~~~~~--~~~~~~d~~----~~~~--~~~~~~~~~~~l~-~~dv~~~n~~E~~~ 180 (296)
.+.+.+ +.|+.. ....+.+.++++.++++ +.++++|+. ...| .....+.+.+++. ++|++++|..|++.
T Consensus 71 ~~~~~v-~~G~l~~~~~~~~~~~~l~~~~~~~~~~~vv~Dpv~~~~~~~~~~~~~~~~~~~~~l~~~~dvi~pN~~Ea~~ 149 (254)
T cd01173 71 LEYDAV-LTGYLGSAEQVEAVAEIVKRLKEKNPNLLYVCDPVMGDNGKLYVVAEEIVPVYRDLLVPLADIITPNQFELEL 149 (254)
T ss_pred ccCCEE-EEecCCCHHHHHHHHHHHHHHHHhCCCceEEECCCCCcCCcceecChhHHHHHHHHHHhcCCEECCcHHHHHH
Confidence 456776 455432 22346777888888776 889999983 2233 2234455666666 99999999999999
Q ss_pred HHHHcCCCCCCHHHHHHHHhcCCCCCCCCceEEEEeeCCC------cEEEEECCeEEEEecccCCCcc-ccCCCCCchhh
Q 022475 181 FAKVHGWETDNVEEIALKISQWPKASGTHKRITVITQGAD------PVVVAEDGKVKLFPVILLPKEK-LVDTNGAGDAF 253 (296)
Q Consensus 181 l~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~vvvt~G~~------G~~~~~~~~~~~~~~~~~~~~~-vvd~tGaGDaf 253 (296)
+++....+.++.+++++.+ ...|++.|++|.|+. |++++++++.++++.+.. + ++|++|+||+|
T Consensus 150 l~g~~~~~~~~~~~~~~~l------~~~g~~~Vvit~g~~~~~~~~g~~~~~~~~~~~~~~~~~---~~~~~~~GaGD~f 220 (254)
T cd01173 150 LTGKKINDLEDAKAAARAL------HAKGPKTVVVTSVELADDDRIEMLGSTATEAWLVQRPKI---PFPAYFNGTGDLF 220 (254)
T ss_pred HcCCCcCCHHHHHHHHHHH------HHhCCCEEEEEeeccCCCCcEEEEEEecCccEEEEeecc---CCCCCcCChHHHH
Confidence 9875433334667777777 466789999999985 788777766655554443 4 69999999999
Q ss_pred hHHHHHHHhcCCCHHHHHHHhhHHhhhhhhh
Q 022475 254 VGGFLSQLVQEKPVEDCVRTGCYAANVVIQR 284 (296)
Q Consensus 254 ~ag~~~~l~~~~~~~~a~~~A~~~aa~~~~~ 284 (296)
+|+|+++|++|+++++|+++|+++-..+++.
T Consensus 221 ~a~~~~~l~~g~~~~~a~~~A~~~~~~~i~~ 251 (254)
T cd01173 221 AALLLARLLKGKSLAEALEKALNFVHEVLEA 251 (254)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998877754
No 51
>PRK12412 pyridoxal kinase; Reviewed
Probab=99.82 E-value=4.6e-19 Score=150.56 Aligned_cols=160 Identities=21% Similarity=0.192 Sum_probs=122.5
Q ss_pred ceEEEEeccccccChHHHHHHHHHHhhCCCE-EEEeCCchh------hhhhh-hHHHHhhcCCCcEEEcCHHHHHHHHHH
Q 022475 113 AKYYYIAGFFLTVSPESIQMVAEHAAAKNKV-FMMNLSAPF------ICEFF-REPQEKALPYMDYVFGNETEARTFAKV 184 (296)
Q Consensus 113 ~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~-~~~d~~~~~------~~~~~-~~~~~~~l~~~dv~~~n~~E~~~l~~~ 184 (296)
.|.+.+. +..+.+.+..+.+.+++.+.+ +++||.... ..+.. ....+.+++++|+++||..|++.|++.
T Consensus 73 ~~~ikiG---~l~~~~~v~~i~~~~~~~~~~~vv~DPv~~~~~g~~~~~~~~~~~~~~~ll~~advitpN~~Ea~~L~g~ 149 (268)
T PRK12412 73 VDALKTG---MLGSVEIIEMVAETIEKHNFKNVVVDPVMVCKGADEALHPETNDCLRDVLVPKALVVTPNLFEAYQLSGV 149 (268)
T ss_pred CCEEEEC---CCCCHHHHHHHHHHHHhcCCCCEEECcCeeeCCCCcCCChHHHHHHHHhhhccceEEcCCHHHHHHHhCc
Confidence 7888875 233668888888888887775 999985321 11111 223456889999999999999999875
Q ss_pred cCCCCCCHHHHHHHHhcCCCCCCCCceEEEEeeCCCcE------EEEECCeEEEEecccCCCccccCCCCCchhhhHHHH
Q 022475 185 HGWETDNVEEIALKISQWPKASGTHKRITVITQGADPV------VVAEDGKVKLFPVILLPKEKLVDTNGAGDAFVGGFL 258 (296)
Q Consensus 185 ~~~~~~~~~~~~~~l~~~~~~~~~g~~~vvvt~G~~G~------~~~~~~~~~~~~~~~~~~~~vvd~tGaGDaf~ag~~ 258 (296)
...+.++..++++.+ .+.|++.|+||.|+.|+ +++.+++.++++.+++ +.+|++|+||+|+|+|+
T Consensus 150 ~~~~~~~~~~aa~~l------~~~g~~~ViIt~G~~g~~~~~~~~~~~~~~~~~~~~~~v---~~~~t~GaGD~f~aa~a 220 (268)
T PRK12412 150 KINSLEDMKEAAKKI------HALGAKYVLIKGGSKLGTETAIDVLYDGETFDLLESEKI---DTTNTHGAGCTYSAAIT 220 (268)
T ss_pred CCCCHHHHHHHHHHH------HhcCCCEEEEeccCCCCCCceEEEEEeCCEEEEEEeCcc---CCCCCCchHHHHHHHHH
Confidence 433334566777777 46789999999998763 4455665566665544 78999999999999999
Q ss_pred HHHhcCCCHHHHHHHhhHHhhhhhhh
Q 022475 259 SQLVQEKPVEDCVRTGCYAANVVIQR 284 (296)
Q Consensus 259 ~~l~~~~~~~~a~~~A~~~aa~~~~~ 284 (296)
++|++|+++++|+++|..+...+++.
T Consensus 221 a~l~~g~~l~eA~~~A~~~~~~~i~~ 246 (268)
T PRK12412 221 AELAKGKPVKEAVKTAKEFITAAIRY 246 (268)
T ss_pred HHHHCCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999988875
No 52
>TIGR00097 HMP-P_kinase phosphomethylpyrimidine kinase. This model represents phosphomethylpyrimidine kinase, the ThiD protein of thiamine biosynthesis. The protein is commonly observed within operons containing other thiamine biosynthesis genes. Numerous examples are fusion proteins with other thiamine-biosynthetic domains. Saccaromyces has three recent paralogs, two of which are isofunctional and score above the trusted cutoff. The third shows a longer branch length in a phylogenetic tree and scores below the trusted cutoff, as do putative second copies in a number of species.
Probab=99.81 E-value=7.7e-19 Score=148.23 Aligned_cols=161 Identities=15% Similarity=0.172 Sum_probs=122.8
Q ss_pred cceEEEEeccccccChHHHHHHHHHHhhCCC-EEEEeCCch------hhhhhhhH-HHHhhcCCCcEEEcCHHHHHHHHH
Q 022475 112 KAKYYYIAGFFLTVSPESIQMVAEHAAAKNK-VFMMNLSAP------FICEFFRE-PQEKALPYMDYVFGNETEARTFAK 183 (296)
Q Consensus 112 ~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~-~~~~d~~~~------~~~~~~~~-~~~~~l~~~dv~~~n~~E~~~l~~ 183 (296)
+.+.+-+. +..+.+.+..+++.+++.+. ++++||... .+.....+ ..+.+++++|+++||..|++.|++
T Consensus 67 ~~~aikiG---~l~~~~~~~~i~~~~~~~~~~~vVlDPv~~~~~g~~l~~~~~~~~~~~~ll~~~dvitpN~~Ea~~L~g 143 (254)
T TIGR00097 67 PVDAAKTG---MLASAEIVEAVARKLREYPVRPLVVDPVMVAKSGAPLLEEEAIEALRKRLLPLATLITPNLPEAEALLG 143 (254)
T ss_pred CCCEEEEC---CcCCHHHHHHHHHHHHhcCCCcEEECCccccCCCCcCCCHHHHHHHHHhccccccEecCCHHHHHHHhC
Confidence 35667664 22356888889998888888 699997421 11111222 234678999999999999999987
Q ss_pred HcCCCCCCHHHHHHHHhcCCCCCCCCceEEEEeeCCC----cE-EEEECCeEEEEecccCCCccccCCCCCchhhhHHHH
Q 022475 184 VHGWETDNVEEIALKISQWPKASGTHKRITVITQGAD----PV-VVAEDGKVKLFPVILLPKEKLVDTNGAGDAFVGGFL 258 (296)
Q Consensus 184 ~~~~~~~~~~~~~~~l~~~~~~~~~g~~~vvvt~G~~----G~-~~~~~~~~~~~~~~~~~~~~vvd~tGaGDaf~ag~~ 258 (296)
....+.++..++++.+ ...|++.+++|.|+. |. +++++++.++++.+++ +++|++|+||+|+|+|+
T Consensus 144 ~~~~~~~~~~~~a~~l------~~~g~~~Vvvt~G~~~~~~~~~~~~~~~~~~~~~~~~~---~~~d~~GaGD~f~aala 214 (254)
T TIGR00097 144 TKIRTEQDMIKAAKKL------RELGPKAVLIKGGHLEGDQAVDVLFDGGEIHILKAPRI---ETKNTHGTGCTLSAAIA 214 (254)
T ss_pred CCCCCHHHHHHHHHHH------HhcCCCEEEEeCCCCCCCceeEEEEECCeEEEEEeccc---CCCCCCChHHHHHHHHH
Confidence 5433334566777777 467889999999973 44 5677777777766544 78999999999999999
Q ss_pred HHHhcCCCHHHHHHHhhHHhhhhhhh
Q 022475 259 SQLVQEKPVEDCVRTGCYAANVVIQR 284 (296)
Q Consensus 259 ~~l~~~~~~~~a~~~A~~~aa~~~~~ 284 (296)
++|++|+++++|+++|++++...+++
T Consensus 215 a~la~g~~l~eA~~~A~~~~~~~i~~ 240 (254)
T TIGR00097 215 ANLAKGLSLKEAVKEAKEFVTGAIRY 240 (254)
T ss_pred HHHHCCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999976
No 53
>TIGR00687 pyridox_kin pyridoxal kinase. ThiD and related proteins form an outgroup.
Probab=99.80 E-value=7.4e-19 Score=150.95 Aligned_cols=163 Identities=13% Similarity=0.145 Sum_probs=116.6
Q ss_pred hhcceEEEEecccc-ccChHHHHHHHHHHhhCC--CEEEEeCCch-----hh-hhhhhHHH-HhhcCCCcEEEcCHHHHH
Q 022475 110 VEKAKYYYIAGFFL-TVSPESIQMVAEHAAAKN--KVFMMNLSAP-----FI-CEFFREPQ-EKALPYMDYVFGNETEAR 179 (296)
Q Consensus 110 ~~~~~~~~i~g~~~-~~~~~~~~~~~~~~~~~~--~~~~~d~~~~-----~~-~~~~~~~~-~~~l~~~dv~~~n~~E~~ 179 (296)
+.+.|++ ++|+.. ....+.+.++++.+++.+ ..+++|+... .| .+...+.+ +.+++++|++++|..|++
T Consensus 72 ~~~~d~v-~~G~l~~~~~~~~~~~~l~~~~~~~~~~~vv~Dpv~~d~~~~~~~~~~~~~~~~~~ll~~adii~pN~~Ea~ 150 (286)
T TIGR00687 72 LNQCDAV-LSGYLGSAEQVAMVVGIVRQVKQANPQALYVCDPVMGDPEKGCYVAPDLLEVYREKAIPVADIITPNQFELE 150 (286)
T ss_pred cccCCEE-EECCCCCHHHHHHHHHHHHHHHHhCCCCcEEECCeeeeCCCCeeeChhHHHHHHHhccccccEecCCHHHHH
Confidence 4578886 556543 223357778888877765 5678888211 11 12233444 458899999999999999
Q ss_pred HHHHHcCCCCCCHHHHHHHHhcCCCCCCCCceEEEEe-eCCCcE--------EEEECCeEEEEecccCCCcc-ccCCCCC
Q 022475 180 TFAKVHGWETDNVEEIALKISQWPKASGTHKRITVIT-QGADPV--------VVAEDGKVKLFPVILLPKEK-LVDTNGA 249 (296)
Q Consensus 180 ~l~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~vvvt-~G~~G~--------~~~~~~~~~~~~~~~~~~~~-vvd~tGa 249 (296)
.+++....+.++..++++.+ ...|++.+|+| .|.+|+ +++++++.++.+.++. + ++|++||
T Consensus 151 ~L~g~~~~~~~~~~~~~~~l------~~~g~~~Viit~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~d~~Ga 221 (286)
T TIGR00687 151 LLTGRKINTVEEALAAADAL------IAMGPDIVLVTHLARAGSQRDRDFEGLVVTQEGRWHISRPLA---VFMRQPVGT 221 (286)
T ss_pred HHhCCCcCCHHHHHHHHHHH------HHhCCCEEEEEeccccCCCCCcceeEEEEcCCceEEEeccCc---CCCCCCCCh
Confidence 99875433334555667777 45688899999 688775 4456565666654433 4 6899999
Q ss_pred chhhhHHHHHHHhcCCCHHHHHHHhhHHhhhhh
Q 022475 250 GDAFVGGFLSQLVQEKPVEDCVRTGCYAANVVI 282 (296)
Q Consensus 250 GDaf~ag~~~~l~~~~~~~~a~~~A~~~aa~~~ 282 (296)
||+|+|+|++++++|+++++|+++|+++...++
T Consensus 222 GD~f~A~~l~~l~~g~~~~~al~~A~~~v~~~l 254 (286)
T TIGR00687 222 GDLIAALLLATLLHGNSLKEALEKTVSAVYHVL 254 (286)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999944444
No 54
>PRK05756 pyridoxamine kinase; Validated
Probab=99.80 E-value=1.1e-18 Score=149.79 Aligned_cols=165 Identities=18% Similarity=0.192 Sum_probs=119.7
Q ss_pred hhcceEEEEeccccc-cChHHHHHHHHHHhhCC--CEEEEeCCch-----hh-hhhhhH-HHHhhcCCCcEEEcCHHHHH
Q 022475 110 VEKAKYYYIAGFFLT-VSPESIQMVAEHAAAKN--KVFMMNLSAP-----FI-CEFFRE-PQEKALPYMDYVFGNETEAR 179 (296)
Q Consensus 110 ~~~~~~~~i~g~~~~-~~~~~~~~~~~~~~~~~--~~~~~d~~~~-----~~-~~~~~~-~~~~~l~~~dv~~~n~~E~~ 179 (296)
+...+.+ ++|+... ...+.+.++++.+++.+ ..+++||... .| .+...+ ..+.+++++|+++||..|++
T Consensus 72 l~~~~~v-~~G~l~~~~~~~~v~~~i~~~k~~~~~~~~v~DPv~~d~~~~~~~~~~~~~~~~~~ll~~adiitpN~~Ea~ 150 (286)
T PRK05756 72 LGECDAV-LSGYLGSAEQGEAILDAVRRVKAANPQALYFCDPVMGDPEKGCIVAPGVAEFLRDRALPAADIITPNLFELE 150 (286)
T ss_pred cccCCEE-EECCCCCHHHHHHHHHHHHHHHHhCCCceEEECCccccCCCCEEECccHhHHHHHhhcccccEecCCHHHHH
Confidence 3467855 6665432 22356777777777665 4577886321 11 112223 33458999999999999999
Q ss_pred HHHHHcCCCCCCHHHHHHHHhcCCCCCCCCceEEEEeeCCC--------cEEEEECCeEEEEecccCCCccc-cCCCCCc
Q 022475 180 TFAKVHGWETDNVEEIALKISQWPKASGTHKRITVITQGAD--------PVVVAEDGKVKLFPVILLPKEKL-VDTNGAG 250 (296)
Q Consensus 180 ~l~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~vvvt~G~~--------G~~~~~~~~~~~~~~~~~~~~~v-vd~tGaG 250 (296)
.|++....+.++..++++.+ ...|++.|+||.|+. |++++++++.++++.+++ ++ +|++|||
T Consensus 151 ~L~g~~~~~~~~~~~~~~~l------~~~g~~~Vvvt~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~---~~~v~~~GaG 221 (286)
T PRK05756 151 WLSGRPVETLEDAVAAARAL------IARGPKIVLVTSLARAGYPADRFEMLLVTADGAWHISRPLV---DFMRQPVGVG 221 (286)
T ss_pred HHhCCCcCCHHHHHHHHHHH------HHhCCCEEEEeccccCCCCCCcEEEEEEECCceEEEecCcc---CCCCCCCChH
Confidence 99875433334555666666 456889999999876 477777777776665443 56 7999999
Q ss_pred hhhhHHHHHHHhcCCCHHHHHHHhhHHhhhhhhh
Q 022475 251 DAFVGGFLSQLVQEKPVEDCVRTGCYAANVVIQR 284 (296)
Q Consensus 251 Daf~ag~~~~l~~~~~~~~a~~~A~~~aa~~~~~ 284 (296)
|+|+|+|+++|++|+++++|+++|++.....++.
T Consensus 222 D~f~a~~~a~l~~g~~~~~al~~A~~~~~~~i~~ 255 (286)
T PRK05756 222 DLTSALFLARLLQGGSLEEALEHTTAAVYEVMAR 255 (286)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999988875
No 55
>PRK12413 phosphomethylpyrimidine kinase; Provisional
Probab=99.80 E-value=1.7e-18 Score=146.24 Aligned_cols=163 Identities=17% Similarity=0.156 Sum_probs=115.6
Q ss_pred hcceEEEEe-ccccccChHHHHHHHHHHh-hCCCEEEEeCCch--hh----hhhhhHHHHhhcCCCcEEEcCHHHHHHHH
Q 022475 111 EKAKYYYIA-GFFLTVSPESIQMVAEHAA-AKNKVFMMNLSAP--FI----CEFFREPQEKALPYMDYVFGNETEARTFA 182 (296)
Q Consensus 111 ~~~~~~~i~-g~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~~~--~~----~~~~~~~~~~~l~~~dv~~~n~~E~~~l~ 182 (296)
...++..+. |+.. +.+....+++.++ ..+.++++||... .| .+...+.++++++++|+++||.+|++.|+
T Consensus 67 ~~~~~~~i~~G~l~--~~~~~~~~~~~~~~~~~~~vv~DPv~~~~~~~~~~~~~~~~~l~~ll~~~dli~pN~~E~~~L~ 144 (253)
T PRK12413 67 KDVPFSAIKIGLLP--NVEIAEQALDFIKGHPGIPVVLDPVLVCKETHDVEVSELRQELIQFFPYVTVITPNLVEAELLS 144 (253)
T ss_pred hCCCCCEEEECCcC--CHHHHHHHHHHHHhCCCCCEEEcCceecCCCCccccHHHHHHHHHHhccCcEECCCHHHHHHHh
Confidence 344455554 4322 3455666666665 3678899997322 12 12234556678899999999999999999
Q ss_pred HHcCCCCCCHHHHHHHHhcCCCCCCCCceEEEEeeCCCc-----E-EEEECCeEEEEecccCCCccccCCCCCchhhhHH
Q 022475 183 KVHGWETDNVEEIALKISQWPKASGTHKRITVITQGADP-----V-VVAEDGKVKLFPVILLPKEKLVDTNGAGDAFVGG 256 (296)
Q Consensus 183 ~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~vvvt~G~~G-----~-~~~~~~~~~~~~~~~~~~~~vvd~tGaGDaf~ag 256 (296)
+....+.++.+++++.+ .+.|++.|++|.|+.| . ++++++ ..+.+.++. ..+|++||||+|+|+
T Consensus 145 g~~~~~~~~~~~~a~~l------~~~g~~~Vvvt~g~~~~~~~~~~~~~~~~-~~~~~~~~~---~~~~~~GaGDaf~a~ 214 (253)
T PRK12413 145 GKEIKTLEDMKEAAKKL------YDLGAKAVVIKGGNRLSQKKAIDLFYDGK-EFVILESPV---LEKNNIGAGCTFASS 214 (253)
T ss_pred CcCCCCHHHHHHHHHHH------HHcCCCEEEEeCCCCCCCCcceEEEEcCC-EEEEEeecc---cCCCCCChHHHHHHH
Confidence 75433334566777777 4568899999999864 2 344444 444444443 679999999999999
Q ss_pred HHHHHhcCCCHHHHHHHhhHHhhhhhhhc
Q 022475 257 FLSQLVQEKPVEDCVRTGCYAANVVIQRS 285 (296)
Q Consensus 257 ~~~~l~~~~~~~~a~~~A~~~aa~~~~~~ 285 (296)
|+++|++|+++++|+++|.++....+++.
T Consensus 215 ~~~~l~~g~~l~ea~~~A~~~~~~~l~~~ 243 (253)
T PRK12413 215 IASQLVKGKSPLEAVKNSKDFVYQAIQQS 243 (253)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999988888763
No 56
>PRK06427 bifunctional hydroxy-methylpyrimidine kinase/ hydroxy-phosphomethylpyrimidine kinase; Reviewed
Probab=99.79 E-value=3.2e-18 Score=145.55 Aligned_cols=162 Identities=17% Similarity=0.183 Sum_probs=121.8
Q ss_pred cceEEEEeccccccChHHHHHHHHHHhhCCC-EEEEeCCc------hhhhhhhhHHH-HhhcCCCcEEEcCHHHHHHHHH
Q 022475 112 KAKYYYIAGFFLTVSPESIQMVAEHAAAKNK-VFMMNLSA------PFICEFFREPQ-EKALPYMDYVFGNETEARTFAK 183 (296)
Q Consensus 112 ~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~-~~~~d~~~------~~~~~~~~~~~-~~~l~~~dv~~~n~~E~~~l~~ 183 (296)
+.+.+.+.- ..+++.+..+.+.+++.+. ++++||.. +.+.....+.+ +++++++|+++||..|++.|++
T Consensus 73 ~~~ai~iG~---l~~~~~~~~i~~~~~~~~~~~vv~DPv~~~~~~~~~~~~~~~~~~~~~ll~~~dvitpN~~Ea~~L~g 149 (266)
T PRK06427 73 RIDAVKIGM---LASAEIIETVAEALKRYPIPPVVLDPVMIAKSGDPLLADDAVAALRERLLPLATLITPNLPEAEALTG 149 (266)
T ss_pred CCCEEEECC---cCCHHHHHHHHHHHHhCCCCCEEEcCccccCCCCcCCCHHHHHHHHHhhhCcCeEEcCCHHHHHHHhC
Confidence 567777752 2256778888888887775 79999842 12222222233 4588999999999999999987
Q ss_pred HcCCCCCC-HHHHHHHHhcCCCCCCCCceEEEEeeCC--CcE----EEEECCeEEEEecccCCCccccCCCCCchhhhHH
Q 022475 184 VHGWETDN-VEEIALKISQWPKASGTHKRITVITQGA--DPV----VVAEDGKVKLFPVILLPKEKLVDTNGAGDAFVGG 256 (296)
Q Consensus 184 ~~~~~~~~-~~~~~~~l~~~~~~~~~g~~~vvvt~G~--~G~----~~~~~~~~~~~~~~~~~~~~vvd~tGaGDaf~ag 256 (296)
....+.++ .+++++.+ .+.|++.||||.|+ +|. +++++++.++++.+++ +.+|++|+||+|+|+
T Consensus 150 ~~~~~~~~~~~~~a~~l------~~~g~~~Vvit~g~~~~g~~~~~~~~~~~~~~~~~~~~~---~~~~~~GaGD~f~a~ 220 (266)
T PRK06427 150 LPIADTEDEMKAAARAL------HALGCKAVLIKGGHLLDGEESVDWLFDGEGEERFSAPRI---PTKNTHGTGCTLSAA 220 (266)
T ss_pred CCCCCcHHHHHHHHHHH------HhcCCCEEEEcCCCCCCCCceeEEEEeCCcEEEEEeeeE---CCCCCCChHHHHHHH
Confidence 53322222 56777777 46678999999998 553 5667666666665544 678999999999999
Q ss_pred HHHHHhcCCCHHHHHHHhhHHhhhhhhhc
Q 022475 257 FLSQLVQEKPVEDCVRTGCYAANVVIQRS 285 (296)
Q Consensus 257 ~~~~l~~~~~~~~a~~~A~~~aa~~~~~~ 285 (296)
|++++++|+++++|+++|+.++..++++.
T Consensus 221 l~~~l~~g~~l~~A~~~A~~~~~~~i~~~ 249 (266)
T PRK06427 221 IAAELAKGASLLDAVQTAKDYVTRAIRHA 249 (266)
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998763
No 57
>cd01169 HMPP_kinase 4-amino-5-hydroxymethyl-2-methyl-pyrimidine phosphate kinase (HMPP-kinase) catalyzes two consecutive phosphorylation steps in the thiamine phosphate biosynthesis pathway, leading to the synthesis of vitamin B1. The first step is the phosphorylation of the hydroxyl group of HMP to form 4-amino-5-hydroxymethyl-2-methyl-pyrimidine phosphate (HMP-P) and then the phophorylation of HMP-P to form 4-amino-5-hydroxymethyl-2-methyl-pyrimidine pyrophosphate (HMP-PP), which is the substrate for the thiamine synthase coupling reaction.
Probab=99.79 E-value=5.1e-18 Score=142.39 Aligned_cols=161 Identities=19% Similarity=0.181 Sum_probs=120.6
Q ss_pred cceEEEEeccccccChHHHHHHHHHHhhC-CCEEEEeCCch------hhhhhhhH-HHHhhcCCCcEEEcCHHHHHHHHH
Q 022475 112 KAKYYYIAGFFLTVSPESIQMVAEHAAAK-NKVFMMNLSAP------FICEFFRE-PQEKALPYMDYVFGNETEARTFAK 183 (296)
Q Consensus 112 ~~~~~~i~g~~~~~~~~~~~~~~~~~~~~-~~~~~~d~~~~------~~~~~~~~-~~~~~l~~~dv~~~n~~E~~~l~~ 183 (296)
+.+.+.+ |+ ..+++.+..+.+.+++. +.++++||... .+.....+ ..+.+++++|+++||..|++.|++
T Consensus 68 ~~~~i~~-G~--l~~~~~~~~i~~~~~~~~~~~vv~Dpv~~~~~~~~~~~~~~~~~~~~~ll~~~dvitpN~~Ea~~L~g 144 (242)
T cd01169 68 PVDAIKI-GM--LGSAEIIEAVAEALKDYPDIPVVLDPVMVAKSGDSLLDDDAIEALRELLLPLATLITPNLPEAELLTG 144 (242)
T ss_pred CCCEEEE-CC--CCCHHHHHHHHHHHHhCCCCcEEECCceeCCCCCcccCHHHHHHHHHHhhccCeEEeCCHHHHHHHhC
Confidence 5788887 32 22577888888888776 78899998432 11111222 334567999999999999999987
Q ss_pred HcCCCCCCHHHHHHHHhcCCCCCCCCceEEEEeeCCCc-----EEEEECCeEEEEecccCCCccccCCCCCchhhhHHHH
Q 022475 184 VHGWETDNVEEIALKISQWPKASGTHKRITVITQGADP-----VVVAEDGKVKLFPVILLPKEKLVDTNGAGDAFVGGFL 258 (296)
Q Consensus 184 ~~~~~~~~~~~~~~~l~~~~~~~~~g~~~vvvt~G~~G-----~~~~~~~~~~~~~~~~~~~~~vvd~tGaGDaf~ag~~ 258 (296)
....+..+..++++.+ ...|++.||+|.|+.| .+++++++.++++.++. +++|++|+||+|+|+|+
T Consensus 145 ~~~~~~~~~~~~~~~l------~~~g~~~Vvit~g~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~GaGD~f~a~l~ 215 (242)
T cd01169 145 LEIATEEDMMKAAKAL------LALGAKAVLIKGGHLPGDEAVDVLYDGGGFFEFESPRI---DTKNTHGTGCTLSSAIA 215 (242)
T ss_pred CCCCCHHHHHHHHHHH------HhcCCCEEEEecCCCCCCceeEEEEECCcEEEEeccee---CCCCCCChHHHHHHHHH
Confidence 5433333455666666 4668899999999985 35667777777776554 68999999999999999
Q ss_pred HHHhcCCCHHHHHHHhhHHhhhhhhh
Q 022475 259 SQLVQEKPVEDCVRTGCYAANVVIQR 284 (296)
Q Consensus 259 ~~l~~~~~~~~a~~~A~~~aa~~~~~ 284 (296)
++|++|+++++|+++|+.+-...+++
T Consensus 216 a~l~~g~~~~~A~~~A~~~~~~~i~~ 241 (242)
T cd01169 216 ANLAKGLSLEEAVREAKEYVTQAIRN 241 (242)
T ss_pred HHHHCCCCHHHHHHHHHHHHHHHHHc
Confidence 99999999999999999988776653
No 58
>PRK08573 phosphomethylpyrimidine kinase; Provisional
Probab=99.78 E-value=8.6e-18 Score=152.33 Aligned_cols=151 Identities=19% Similarity=0.216 Sum_probs=117.3
Q ss_pred ChHHHHHHHHHHhhCCCEEEEeCCc------hhhhhhhh-HHHHhhcCCCcEEEcCHHHHHHHHHHcCCCCCCHHHHHHH
Q 022475 126 SPESIQMVAEHAAAKNKVFMMNLSA------PFICEFFR-EPQEKALPYMDYVFGNETEARTFAKVHGWETDNVEEIALK 198 (296)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~d~~~------~~~~~~~~-~~~~~~l~~~dv~~~n~~E~~~l~~~~~~~~~~~~~~~~~ 198 (296)
+.+.+..+++.+++.+.++++|+.. +.|..... ...+.+++++|++++|..|++.|++....+.++.+++++.
T Consensus 82 ~~e~~~~i~~~~k~~g~~vv~DPv~~~~sG~~l~~~~~~~~l~~~llp~adli~pN~~Ea~~L~g~~i~~~~d~~~aa~~ 161 (448)
T PRK08573 82 NREIIEAVAKTVSKYGFPLVVDPVMIAKSGAPLLREDAVDALIKRLLPLATVVTPNRPEAEKLTGMKIRSVEDARKAAKY 161 (448)
T ss_pred CHHHHHHHHHHHHHcCCCEEEcCccccCCCCcCCCHHHHHHHHHhhhccCEEEcCCHHHHHHHhCCCCCCHHHHHHHHHH
Confidence 4688899999999999999999832 22322222 2235788999999999999999987543333456677777
Q ss_pred HhcCCCCCCCCceEEEEeeCC----CcE-EEEECCeEEEEecccCCCccccCCCCCchhhhHHHHHHHhcCCCHHHHHHH
Q 022475 199 ISQWPKASGTHKRITVITQGA----DPV-VVAEDGKVKLFPVILLPKEKLVDTNGAGDAFVGGFLSQLVQEKPVEDCVRT 273 (296)
Q Consensus 199 l~~~~~~~~~g~~~vvvt~G~----~G~-~~~~~~~~~~~~~~~~~~~~vvd~tGaGDaf~ag~~~~l~~~~~~~~a~~~ 273 (296)
+. ...|++.|++|.|+ +|+ +++++++.++++.+++ +++|++||||+|+|+|++++++|+++++|+++
T Consensus 162 L~-----~~~G~~~VvVt~G~~~g~~~~~~~~~~~~~~~~~~~~v---~~~dt~GAGDaFsAa~aa~l~~G~~l~eAl~~ 233 (448)
T PRK08573 162 IV-----EELGAEAVVVKGGHLEGEEAVDVLYHNGTFREFRAPRV---ESGCTHGTGCSFSAAIAAGLAKGLDPEEAIKT 233 (448)
T ss_pred HH-----HHcCCCEEEEecccCCCCceeEEEEECCeEEEEEecCc---CCCCCCChHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 73 23688999999985 343 4556666667766544 78999999999999999999999999999999
Q ss_pred hhHHhhhhhhh
Q 022475 274 GCYAANVVIQR 284 (296)
Q Consensus 274 A~~~aa~~~~~ 284 (296)
|+.+...+++.
T Consensus 234 A~~~~~~al~~ 244 (448)
T PRK08573 234 AKKFITMAIKY 244 (448)
T ss_pred HHHHHHHHHHH
Confidence 99999999983
No 59
>PRK07105 pyridoxamine kinase; Validated
Probab=99.77 E-value=6.1e-18 Score=145.11 Aligned_cols=163 Identities=17% Similarity=0.140 Sum_probs=116.9
Q ss_pred cceEEEEeccccccChHHHHHH---HHHHhhCCCEEEEeCCchh----h---hhhhhHHHHhhcCCCcEEEcCHHHHHHH
Q 022475 112 KAKYYYIAGFFLTVSPESIQMV---AEHAAAKNKVFMMNLSAPF----I---CEFFREPQEKALPYMDYVFGNETEARTF 181 (296)
Q Consensus 112 ~~~~~~i~g~~~~~~~~~~~~~---~~~~~~~~~~~~~d~~~~~----~---~~~~~~~~~~~l~~~dv~~~n~~E~~~l 181 (296)
+.|.+.++ +. .+++.+..+ ++.+++.++++++||.... | .....+.++++++++|+++||..|++.|
T Consensus 75 ~~~aik~G-~l--~~~~~~~~v~~~~~~~~~~~~~vv~DPv~~~~~~l~~~~~~~~~~~~~~ll~~advitpN~~Ea~~L 151 (284)
T PRK07105 75 KFDAIYSG-YL--GSPRQIQIVSDFIKYFKKKDLLVVVDPVMGDNGKLYQGFDQEMVEEMRKLIQKADVITPNLTEACLL 151 (284)
T ss_pred ccCEEEEC-cC--CCHHHHHHHHHHHHHhccCCCeEEECCccccCCcCCCCCCHHHHHHHHHHHhhCCEecCCHHHHHHH
Confidence 57887764 32 244444444 4444556788999985321 2 1223456678999999999999999999
Q ss_pred HHHcCC----CCCCHHHHHHHHhcCCCCCCCCceEEEEee-----CCCcEEEEECC--eEEEEecccCCCccccCCCCCc
Q 022475 182 AKVHGW----ETDNVEEIALKISQWPKASGTHKRITVITQ-----GADPVVVAEDG--KVKLFPVILLPKEKLVDTNGAG 250 (296)
Q Consensus 182 ~~~~~~----~~~~~~~~~~~l~~~~~~~~~g~~~vvvt~-----G~~G~~~~~~~--~~~~~~~~~~~~~~vvd~tGaG 250 (296)
++.... +.++.+++++.+ ...|++.+|||. |..|+++++++ ..++.+.+. ..+|++|+|
T Consensus 152 ~g~~~~~~~~~~~~~~~~a~~l------~~~g~~~Vvvt~~~~~~g~~g~~~~~~~~~~~~~~~~~~----~~~~~~GaG 221 (284)
T PRK07105 152 LDKPYLEKSYSEEEIKQLLRKL------ADLGPKIVIITSVPFEDGKIGVAYYDRATDRFWKVFCKY----IPAHYPGTG 221 (284)
T ss_pred cCCCcCcCCCCHHHHHHHHHHH------HhcCCCEEEEcCeeeCCCeEEEEEEeCCCCeEEEEeecc----cCCCcCChh
Confidence 874321 123455666666 456788999999 66788887643 344444332 248999999
Q ss_pred hhhhHHHHHHHhcCCCHHHHHHHhhHHhhhhhhhccC
Q 022475 251 DAFVGGFLSQLVQEKPVEDCVRTGCYAANVVIQRSGC 287 (296)
Q Consensus 251 Daf~ag~~~~l~~~~~~~~a~~~A~~~aa~~~~~~G~ 287 (296)
|+|+|+|++++++|+++++|+++|+.+....+++...
T Consensus 222 D~f~aa~~~~l~~g~~l~~av~~A~~~~~~~i~~~~~ 258 (284)
T PRK07105 222 DIFTSVITGSLLQGDSLPIALDRAVQFIEKGIRATLG 258 (284)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999886533
No 60
>PRK08176 pdxK pyridoxal-pyridoxamine kinase/hydroxymethylpyrimidine kinase; Reviewed
Probab=99.77 E-value=9.2e-18 Score=143.46 Aligned_cols=161 Identities=17% Similarity=0.129 Sum_probs=114.6
Q ss_pred hcceEEEEeccccccChHH---HHHHHHHHhh--CCCEEEEeCCch-----hh-hhhhhHHHH-hhcCCCcEEEcCHHHH
Q 022475 111 EKAKYYYIAGFFLTVSPES---IQMVAEHAAA--KNKVFMMNLSAP-----FI-CEFFREPQE-KALPYMDYVFGNETEA 178 (296)
Q Consensus 111 ~~~~~~~i~g~~~~~~~~~---~~~~~~~~~~--~~~~~~~d~~~~-----~~-~~~~~~~~~-~~l~~~dv~~~n~~E~ 178 (296)
.+.|.++++- . .+++. +.++++..+. .+.++++||... .| .+...+.++ .+++++|+++||..|+
T Consensus 87 ~~~d~i~~G~-l--~s~~~~~~i~~~l~~~~~~~~~~~vv~DPvm~d~~~~~~~~~~~~~~~~~~Ll~~advitPN~~Ea 163 (281)
T PRK08176 87 RQLRAVTTGY-M--GSASQIKILAEWLTALRADHPDLLIMVDPVIGDIDSGIYVKPDLPEAYRQHLLPLAQGLTPNIFEL 163 (281)
T ss_pred ccCCEEEECC-C--CCHHHHHHHHHHHHHHHHHCCCCcEEeCCccccCCCCeEECccHHHHHHHHhHhhcCEeCCCHHHH
Confidence 4788888852 2 13443 4444444332 367889998521 11 222334454 5889999999999999
Q ss_pred HHHHHHcCCCCCCHHHHHHHHhcCCCCCCCCceEEEEeeCCCc-------EEEEECCeEEEEecccCCCccccCCCCCch
Q 022475 179 RTFAKVHGWETDNVEEIALKISQWPKASGTHKRITVITQGADP-------VVVAEDGKVKLFPVILLPKEKLVDTNGAGD 251 (296)
Q Consensus 179 ~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~vvvt~G~~G-------~~~~~~~~~~~~~~~~~~~~~vvd~tGaGD 251 (296)
+.|++....+.++..++++.+ .+.|++.||||.|+.| ++++++++.+..+ .+. ..+|++|+||
T Consensus 164 ~~L~g~~~~~~~~~~~~~~~l------~~~g~~~VvIT~g~~g~~~~~~~~~~~~~~~~~~~~-~~~---~~~~~~GaGD 233 (281)
T PRK08176 164 EILTGKPCRTLDSAIAAAKSL------LSDTLKWVVITSAAGNEENQEMQVVVVTADSVNVIS-HPR---VDTDLKGTGD 233 (281)
T ss_pred HHHhCCCCCCHHHHHHHHHHH------HhcCCCEEEEeeccCCCCCCcEEEEEEeCCceEEEe-cCc---cCCCCCChhH
Confidence 999875433333455667777 4678999999999988 5666766654333 222 4579999999
Q ss_pred hhhHHHHHHHhcCCCHHHHHHHhhHHhhhhhhh
Q 022475 252 AFVGGFLSQLVQEKPVEDCVRTGCYAANVVIQR 284 (296)
Q Consensus 252 af~ag~~~~l~~~~~~~~a~~~A~~~aa~~~~~ 284 (296)
+|+|+|++++++|+++++|+++|+..-...++.
T Consensus 234 ~faa~~~a~l~~g~~l~~Av~~A~~~v~~~i~~ 266 (281)
T PRK08176 234 LFCAELVSGLLKGKALTDAAHRAGLRVLEVMRY 266 (281)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999988877764
No 61
>PRK12616 pyridoxal kinase; Reviewed
Probab=99.76 E-value=2.2e-17 Score=140.45 Aligned_cols=161 Identities=16% Similarity=0.162 Sum_probs=119.4
Q ss_pred cceEEEEeccccccChHHHHHHHHHHhhCCC-EEEEeCCchhh------hhhhhHHH-HhhcCCCcEEEcCHHHHHHHHH
Q 022475 112 KAKYYYIAGFFLTVSPESIQMVAEHAAAKNK-VFMMNLSAPFI------CEFFREPQ-EKALPYMDYVFGNETEARTFAK 183 (296)
Q Consensus 112 ~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~-~~~~d~~~~~~------~~~~~~~~-~~~l~~~dv~~~n~~E~~~l~~ 183 (296)
+.|.+.+. + -.+.+.+..+.+.+++.+. ++++||..... .....+.+ +.+++.+|+++||..|++.|++
T Consensus 74 ~~~aikiG-~--l~s~~~i~~i~~~l~~~~~~~vV~DPV~~~~~g~~~l~~~~~~~l~~~L~~~advitpN~~Ea~~L~g 150 (270)
T PRK12616 74 GVDAMKTG-M--LPTVDIIELAADTIKEKQLKNVVIDPVMVCKGANEVLYPEHAEALREQLAPLATVITPNLFEAGQLSG 150 (270)
T ss_pred CCCEEEEC-C--CCCHHHHHHHHHHHHhcCCCCEEEccceecCCCCcccCHHHHHHHHHHhhccceEecCCHHHHHHHcC
Confidence 35777764 2 2356777888888887663 58999854211 11222333 3478899999999999999986
Q ss_pred H-cCCCCCCHHHHHHHHhcCCCCCCCCceEEEEeeCCCcE------EEEECCeEEEEecccCCCccccCCCCCchhhhHH
Q 022475 184 V-HGWETDNVEEIALKISQWPKASGTHKRITVITQGADPV------VVAEDGKVKLFPVILLPKEKLVDTNGAGDAFVGG 256 (296)
Q Consensus 184 ~-~~~~~~~~~~~~~~l~~~~~~~~~g~~~vvvt~G~~G~------~~~~~~~~~~~~~~~~~~~~vvd~tGaGDaf~ag 256 (296)
. ...+.++..++++.+ .+.|++.+|||.|+.|. +++++++.++++.+++ +.+|++|+||+|+|+
T Consensus 151 ~~~~~~~~~~~~aa~~l------~~~G~~~VvVt~G~~g~~~~~~~~~~~~~~~~~~~~~~~---~~~~t~GaGD~fsaa 221 (270)
T PRK12616 151 MGEIKTVEQMKEAAKKI------HELGAQYVVITGGGKLKHEKAVDVLYDGETAEVLESEMI---DTPYTHGAGCTFSAA 221 (270)
T ss_pred CCCCCCHHHHHHHHHHH------HHcCCCEEEEeCCCCCcCCceEEEEEECCeEEEEEeeee---CCCCCCcHHHHHHHH
Confidence 4 222334566777777 46788999999998762 5566766666665444 788999999999999
Q ss_pred HHHHHhcCCCHHHHHHHhhHHhhhhhhh
Q 022475 257 FLSQLVQEKPVEDCVRTGCYAANVVIQR 284 (296)
Q Consensus 257 ~~~~l~~~~~~~~a~~~A~~~aa~~~~~ 284 (296)
|++++++|+++++|+++|.......++.
T Consensus 222 laa~l~~g~~l~~Av~~A~~~~~~~i~~ 249 (270)
T PRK12616 222 VTAELAKGSEVKEAIYAAKEFITAAIKE 249 (270)
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999988875
No 62
>PTZ00344 pyridoxal kinase; Provisional
Probab=99.64 E-value=1.3e-14 Score=124.98 Aligned_cols=158 Identities=19% Similarity=0.215 Sum_probs=107.5
Q ss_pred eEEEEeccccccChHHHHHHHHHH---hhCC--CEEEEeCCc----hhh-hhhhhHHHHhhcCCCcEEEcCHHHHHHHHH
Q 022475 114 KYYYIAGFFLTVSPESIQMVAEHA---AAKN--KVFMMNLSA----PFI-CEFFREPQEKALPYMDYVFGNETEARTFAK 183 (296)
Q Consensus 114 ~~~~i~g~~~~~~~~~~~~~~~~~---~~~~--~~~~~d~~~----~~~-~~~~~~~~~~~l~~~dv~~~n~~E~~~l~~ 183 (296)
..++++|+.. +++.+..+++.+ ++.+ .++++||-. ..| .....+.++.+++++|++++|..|++.+++
T Consensus 78 ~~~v~sG~l~--~~~~~~~i~~~l~~~~~~~~~~~vv~DPv~~~~g~l~~~~~~~~~~~~ll~~~dii~pN~~E~~~L~g 155 (296)
T PTZ00344 78 YTYVLTGYIN--SADILREVLATVKEIKELRPKLIFLCDPVMGDDGKLYVKEEVVDAYRELIPYADVITPNQFEASLLSG 155 (296)
T ss_pred CCEEEECCCC--CHHHHHHHHHHHHHHHHhCCCceEEECCccccCCceEeCHHHHHHHHHHhhhCCEEeCCHHHHHHHhC
Confidence 3566667554 456555555544 4454 478888532 113 233566677889999999999999999987
Q ss_pred HcCCCCCCHHHHHHHHhcCCCCCCCCceEEEEe---eCCCc----EEEEE--C----CeEEEEecccCCCccccCCCCCc
Q 022475 184 VHGWETDNVEEIALKISQWPKASGTHKRITVIT---QGADP----VVVAE--D----GKVKLFPVILLPKEKLVDTNGAG 250 (296)
Q Consensus 184 ~~~~~~~~~~~~~~~l~~~~~~~~~g~~~vvvt---~G~~G----~~~~~--~----~~~~~~~~~~~~~~~vvd~tGaG 250 (296)
....+.++..++++.+ ...|++.|||| .|..| +++.. . ++.+....+++ + ++++|+|
T Consensus 156 ~~~~~~~~~~~~~~~l------~~~g~~~VvVTg~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~---~-~~~~GaG 225 (296)
T PTZ00344 156 VEVKDLSDALEAIDWF------HEQGIPVVVITSFREDEDPTHLRFLLSCRDKDTKNNKRFTGKVPYI---E-GRYTGTG 225 (296)
T ss_pred CCCCCHHHHHHHHHHH------HHhCCCEEEEEeecCCCCCCcEEEEEEeccccCCCceeEEEecccc---C-CCCCCch
Confidence 5322233455666776 35578999999 55555 34432 1 23344444332 3 5779999
Q ss_pred hhhhHHHHHHHhcCCCHHHHHHHhhHHhhhhhhh
Q 022475 251 DAFVGGFLSQLVQEKPVEDCVRTGCYAANVVIQR 284 (296)
Q Consensus 251 Daf~ag~~~~l~~~~~~~~a~~~A~~~aa~~~~~ 284 (296)
|+|+|+|++.+.+| ++++|+++|.+.-..+++.
T Consensus 226 D~f~A~~~a~l~~g-~~~~a~~~A~a~~~~~i~~ 258 (296)
T PTZ00344 226 DLFAALLLAFSHQH-PMDLAVGKAMGVLQDIIKA 258 (296)
T ss_pred HHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHH
Confidence 99999999888888 9999999999988877764
No 63
>PTZ00347 phosphomethylpyrimidine kinase; Provisional
Probab=99.62 E-value=8.5e-15 Score=135.06 Aligned_cols=162 Identities=15% Similarity=0.170 Sum_probs=113.9
Q ss_pred hhcceEEEE-eccccccChHHHHHHHHHHhhCCCEEEEeCCch------hhhhh----hhHHH-HhhcCCCcEEEcCHHH
Q 022475 110 VEKAKYYYI-AGFFLTVSPESIQMVAEHAAAKNKVFMMNLSAP------FICEF----FREPQ-EKALPYMDYVFGNETE 177 (296)
Q Consensus 110 ~~~~~~~~i-~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~------~~~~~----~~~~~-~~~l~~~dv~~~n~~E 177 (296)
+.+.++.+| .|+. .+++.+..+.+.++ +.++++||-.. .+... ..+.+ +.+++.+|+++||..|
T Consensus 295 ~~d~~~~~Ik~G~l--~s~e~i~~i~~~l~--~~~vV~DPV~~~~~G~~l~~~~~~~~~~~~~~~~Ll~~advitPN~~E 370 (504)
T PTZ00347 295 MSDFNISVVKLGLV--PTARQLEIVIEKLK--NLPMVVDPVLVATSGDDLVAQKNADDVLAMYKERIFPMATIITPNIPE 370 (504)
T ss_pred HhCCCCCEEEECCc--CCHHHHHHHHHHhc--CCCEEEcccceeCCCCcccchhHHHHHHHHHHHhccCcceEEeCCHHH
Confidence 344444444 4432 25677777877775 56788997431 11111 12223 3678999999999999
Q ss_pred HHHHHHHc-CCCCCCHHHHHHHHhcCCCCCCCCceEEEEeeCCCc-------EEEEEC--CeEEEEecccCCCccccCCC
Q 022475 178 ARTFAKVH-GWETDNVEEIALKISQWPKASGTHKRITVITQGADP-------VVVAED--GKVKLFPVILLPKEKLVDTN 247 (296)
Q Consensus 178 ~~~l~~~~-~~~~~~~~~~~~~l~~~~~~~~~g~~~vvvt~G~~G-------~~~~~~--~~~~~~~~~~~~~~~vvd~t 247 (296)
++.|++.. ..+.++.+++++.+ .+.|++.||||.|..| .+++.+ ++.++++.+++ +++|++
T Consensus 371 a~~L~g~~~~~~~~~~~~aa~~l------~~~G~~~VvVtgg~~~~~~~~~~~~l~~~~~~~~~~~~~~~i---~~~~~~ 441 (504)
T PTZ00347 371 AERILGRKEITGVYEARAAAQAL------AQYGSRYVLVKGGHDLIDPEACRDVLYDREKDRFYEFTANRI---ATINTH 441 (504)
T ss_pred HHHHhCCCCCCCHHHHHHHHHHH------HhcCCCEEEEeCCCCCcCCCcceEEEEcCCCCeEEEEEeeeE---CCCCCC
Confidence 99998742 22223455677777 4578899999999963 344443 34566665544 789999
Q ss_pred CCchhhhHHHHHHHhcCCCHHHHHHHhhHHhhhhhhh
Q 022475 248 GAGDAFVGGFLSQLVQEKPVEDCVRTGCYAANVVIQR 284 (296)
Q Consensus 248 GaGDaf~ag~~~~l~~~~~~~~a~~~A~~~aa~~~~~ 284 (296)
|+||+|+|+|++++++|+++++|+++|...-...+..
T Consensus 442 GaGD~fsaaiaa~la~G~~l~eAv~~A~~~v~~~i~~ 478 (504)
T PTZ00347 442 GTGCTLASAISSFLARGYTVPDAVERAIGYVHEAIVR 478 (504)
T ss_pred ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999998887777764
No 64
>PLN02898 HMP-P kinase/thiamin-monophosphate pyrophosphorylase
Probab=99.61 E-value=1.2e-14 Score=133.89 Aligned_cols=162 Identities=13% Similarity=0.109 Sum_probs=118.9
Q ss_pred cceEEEEeccccccChHHHHHHHHHHhhCCCE-EEEeCCchh------hhhhhhHHH-HhhcCCCcEEEcCHHHHHHHHH
Q 022475 112 KAKYYYIAGFFLTVSPESIQMVAEHAAAKNKV-FMMNLSAPF------ICEFFREPQ-EKALPYMDYVFGNETEARTFAK 183 (296)
Q Consensus 112 ~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~-~~~d~~~~~------~~~~~~~~~-~~~l~~~dv~~~n~~E~~~l~~ 183 (296)
+.+.+.+. + ..+.+.+..+++.+++.+.+ +++||.... ......+.+ +.+++++|+++||..|++.|++
T Consensus 78 ~~~aik~G-~--l~~~~~i~~i~~~l~~~~~~~vVlDPV~~~~~G~~l~~~~~~~~l~~~Ll~~adiitPN~~Ea~~L~g 154 (502)
T PLN02898 78 PVDVVKTG-M--LPSAEIVKVLCQALKEFPVKALVVDPVMVSTSGDVLAGPSILSALREELLPLATIVTPNVKEASALLG 154 (502)
T ss_pred CCCEEEEC-C--cCCHHHHHHHHHHHHhCCCCCEEEccccccCCCCccCCHHHHHHHHHhhhccCeEEcCCHHHHHHHhC
Confidence 35666664 2 23578888888888887774 899984211 111222333 3678999999999999999986
Q ss_pred HcC-CCCCCHHHHHHHHhcCCCCCCCCceEEEEeeCCCc------EEEEECCeEEEEecccCCCccccCCCCCchhhhHH
Q 022475 184 VHG-WETDNVEEIALKISQWPKASGTHKRITVITQGADP------VVVAEDGKVKLFPVILLPKEKLVDTNGAGDAFVGG 256 (296)
Q Consensus 184 ~~~-~~~~~~~~~~~~l~~~~~~~~~g~~~vvvt~G~~G------~~~~~~~~~~~~~~~~~~~~~vvd~tGaGDaf~ag 256 (296)
... .+.++..++++.+ ...|++.||+|.|+.+ .+++++++.++++.+++ +.+|++|+||+|+|+
T Consensus 155 ~~~~~~~~~~~~~a~~l------~~~G~~~VvItgg~~~~~~~~~~~l~~~~~~~~~~~~~i---~~~~t~GaGD~fsaa 225 (502)
T PLN02898 155 GDPLETVADMRSAAKEL------HKLGPRYVLVKGGHLPDSLDAVDVLYDGTEFHELRSSRI---KTRNTHGTGCTLASC 225 (502)
T ss_pred CCCCCCHHHHHHHHHHH------HhcCCCEEEEcCCCCCCCCcceEEEEcCCeEEEEeccee---CCCCCCchhhhHHHH
Confidence 321 1223456677777 4668899999999853 35566666666665444 678999999999999
Q ss_pred HHHHHhcCCCHHHHHHHhhHHhhhhhhhc
Q 022475 257 FLSQLVQEKPVEDCVRTGCYAANVVIQRS 285 (296)
Q Consensus 257 ~~~~l~~~~~~~~a~~~A~~~aa~~~~~~ 285 (296)
|++++++|+++++|+++|+.+...+++..
T Consensus 226 iaa~l~~G~~l~eAv~~A~~~v~~ai~~~ 254 (502)
T PLN02898 226 IAAELAKGSDMLSAVKVAKRYVETALEYS 254 (502)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999864
No 65
>cd01171 YXKO-related B.subtilis YXKO protein of unknown function and related proteins. Based on the conservation of the ATP binding site, the substrate binding site and the Mg2+binding site and structural homology this group is a member of the ribokinase-like superfamily.
Probab=99.59 E-value=2.7e-14 Score=120.68 Aligned_cols=162 Identities=17% Similarity=0.070 Sum_probs=113.0
Q ss_pred hhhhcceEEEEeccccccCh-HHHHHHHHHHhhCCCEEEEeCCchhhhhhhhHHHHhhcCCCcEEEcCHHHHHHHHHHcC
Q 022475 108 SIVEKAKYYYIAGFFLTVSP-ESIQMVAEHAAAKNKVFMMNLSAPFICEFFREPQEKALPYMDYVFGNETEARTFAKVHG 186 (296)
Q Consensus 108 ~~~~~~~~~~i~g~~~~~~~-~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~dv~~~n~~E~~~l~~~~~ 186 (296)
..+.+.|++++++ .+.. +.+..+++.+++.+.++++|+..........+ . ...+..++++||..|++.|++...
T Consensus 73 ~~~~~~d~v~ig~---gl~~~~~~~~i~~~~~~~~~pvVlDa~~~~~~~~~~~-~-~~~~~~~iltPn~~E~~~L~g~~~ 147 (254)
T cd01171 73 ELLERADAVVIGP---GLGRDEEAAEILEKALAKDKPLVLDADALNLLADEPS-L-IKRYGPVVLTPHPGEFARLLGALV 147 (254)
T ss_pred hhhccCCEEEEec---CCCCCHHHHHHHHHHHhcCCCEEEEcHHHHHhhcChh-h-hccCCCEEECCCHHHHHHHhCCCh
Confidence 3457789999975 2333 77888888888889999999864332111101 0 235678999999999999987432
Q ss_pred CC-CCCHHHHHHHHhcCCCCCCCCceEEEEeeCCCcEEEEECCeEEEEecccCCCccccCCCCCchhhhHHHHHHHhcCC
Q 022475 187 WE-TDNVEEIALKISQWPKASGTHKRITVITQGADPVVVAEDGKVKLFPVILLPKEKLVDTNGAGDAFVGGFLSQLVQEK 265 (296)
Q Consensus 187 ~~-~~~~~~~~~~l~~~~~~~~~g~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~~~vvd~tGaGDaf~ag~~~~l~~~~ 265 (296)
.+ .++..++++.+. +.+. .+|+..|. +.+++++++.++++.... ..++++|+||+|+|.+.+.+++|+
T Consensus 148 ~~~~~~~~~~a~~l~------~~~~-~~vvlkG~-~~~i~~~~~~~~~~~~~~---~~~~~~GaGD~lag~iaa~la~g~ 216 (254)
T cd01171 148 EEIQADRLAAAREAA------AKLG-ATVVLKGA-VTVIADPDGRVYVNPTGN---PGLATGGSGDVLAGIIAALLAQGL 216 (254)
T ss_pred hhhhhHHHHHHHHHH------HHcC-cEEEEcCC-CCEEECCCCcEEEECCCC---cccccCchHHHHHHHHHHHHHcCC
Confidence 11 123455666664 3333 35555674 556666544455554433 689999999999888888888999
Q ss_pred CHHHHHHHhhHHhhhhhhhc
Q 022475 266 PVEDCVRTGCYAANVVIQRS 285 (296)
Q Consensus 266 ~~~~a~~~A~~~aa~~~~~~ 285 (296)
++.+|+++|+.+.+.+.+..
T Consensus 217 ~~~eA~~~A~~~~~~a~~~~ 236 (254)
T cd01171 217 SPLEAAALAVYLHGLAGDLA 236 (254)
T ss_pred CHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988754
No 66
>COG0351 ThiD Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [Coenzyme metabolism]
Probab=99.59 E-value=3.9e-14 Score=116.58 Aligned_cols=149 Identities=20% Similarity=0.214 Sum_probs=117.8
Q ss_pred ChHHHHHHHHHHhhCC-CEEEEeCCc------hhhhhhhhHHH-HhhcCCCcEEEcCHHHHHHHHHH-cCCCCCCHHHHH
Q 022475 126 SPESIQMVAEHAAAKN-KVFMMNLSA------PFICEFFREPQ-EKALPYMDYVFGNETEARTFAKV-HGWETDNVEEIA 196 (296)
Q Consensus 126 ~~~~~~~~~~~~~~~~-~~~~~d~~~------~~~~~~~~~~~-~~~l~~~dv~~~n~~E~~~l~~~-~~~~~~~~~~~~ 196 (296)
+++.++.+.+..++.+ .++++||-. +...+...+.+ +.++|++++++||..|++.|.+. ...+.++..++.
T Consensus 83 ~~eiie~va~~l~~~~~~~vV~DPVmvaksG~~Ll~~~a~~~l~~~LlP~a~vvTPNl~EA~~L~g~~~i~~~~d~~~a~ 162 (263)
T COG0351 83 SAEIIEVVAEKLKKYGIGPVVLDPVMVAKSGDPLLDEEAVEALREELLPLATVVTPNLPEAEALSGLPKIKTEEDMKEAA 162 (263)
T ss_pred CHHHHHHHHHHHHhcCCCcEEECceEEEcCCCcccChHHHHHHHHHhhccCeEecCCHHHHHHHcCCCccCCHHHHHHHH
Confidence 5788899999999988 779999822 22233334433 48999999999999999999984 545556677776
Q ss_pred HHHhcCCCCCCCCceEEEEeeCCCc----EEEEECCeEEEEecccCCCccccCCCCCchhhhHHHHHHHhcCCCHHHHHH
Q 022475 197 LKISQWPKASGTHKRITVITQGADP----VVVAEDGKVKLFPVILLPKEKLVDTNGAGDAFVGGFLSQLVQEKPVEDCVR 272 (296)
Q Consensus 197 ~~l~~~~~~~~~g~~~vvvt~G~~G----~~~~~~~~~~~~~~~~~~~~~vvd~tGaGDaf~ag~~~~l~~~~~~~~a~~ 272 (296)
+.+ ...|++.||||-|... -++++++..+.+..+. ++-.++.|.|++|+|++.+.|++|.++++|++
T Consensus 163 ~~i------~~~g~~~VliKGGH~~~~~~D~l~~~~~~~~f~~~r---i~t~~tHGTGCTlSaAIaa~LA~G~~l~~AV~ 233 (263)
T COG0351 163 KLL------HELGAKAVLIKGGHLEGEAVDVLYDGGSFYTFEAPR---IPTKNTHGTGCTLSAAIAANLAKGLSLEEAVK 233 (263)
T ss_pred HHH------HHhCCCEEEEcCCCCCCCceeEEEcCCceEEEeccc---cCCCCCCCccHHHHHHHHHHHHcCCCHHHHHH
Confidence 666 5778999999988744 3455666666665544 47788999999999999999999999999999
Q ss_pred HhhHHhhhhhh
Q 022475 273 TGCYAANVVIQ 283 (296)
Q Consensus 273 ~A~~~aa~~~~ 283 (296)
.|-..-..+++
T Consensus 234 ~Ak~fv~~AI~ 244 (263)
T COG0351 234 KAKEFVTRAIR 244 (263)
T ss_pred HHHHHHHHHHh
Confidence 99999988888
No 67
>PF08543 Phos_pyr_kin: Phosphomethylpyrimidine kinase; InterPro: IPR013749 This enzyme 2.7.4.7 from EC is part of the Thiamine pyrophosphate (TPP) synthesis pathway, TPP is an essential cofactor for many enzymes []. ; PDB: 2DDW_B 2DDO_B 2DDM_A 3IBQ_A 3H74_A 3HYO_A 1UB0_A 1VI9_D 1TD2_B 2PHP_D ....
Probab=99.56 E-value=4.3e-14 Score=118.54 Aligned_cols=160 Identities=19% Similarity=0.181 Sum_probs=113.6
Q ss_pred cceEEEEeccccccChHHHHHHHHHHhhCCCEEEEeCCchh------hhhhhhHHHHh-hcCCCcEEEcCHHHHHHHHHH
Q 022475 112 KAKYYYIAGFFLTVSPESIQMVAEHAAAKNKVFMMNLSAPF------ICEFFREPQEK-ALPYMDYVFGNETEARTFAKV 184 (296)
Q Consensus 112 ~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~------~~~~~~~~~~~-~l~~~dv~~~n~~E~~~l~~~ 184 (296)
+.|.+.++ + -.+.+.+..+.+..++.+.++++||-... ..+...+.+++ +++++|+++||..|++.|++.
T Consensus 60 ~~~aikiG-~--l~~~~~v~~i~~~l~~~~~~vV~DPVm~~~~g~~~~~~~~~~~~~~~Llp~AdiitPN~~Ea~~L~g~ 136 (246)
T PF08543_consen 60 KFDAIKIG-Y--LGSAEQVEIIADFLKKPKIPVVLDPVMGDSGGYYYVDPDVVEAMREELLPLADIITPNLTEAELLTGR 136 (246)
T ss_dssp C-SEEEE--S---SSHHHHHHHHHHHHHTTTEEEEE---EETTTECTSSHHHHHHHHHHCGGG-SEEE-BHHHHHHHHTS
T ss_pred cccEEEEc-c--cCCchhhhhHHHHHhccCCCEEEecccccCCCCcCCCHHHHHHHHhccCCcCeEEeCCHHHHHHHhCC
Confidence 57888774 2 22567777777777667779999984321 12223444454 899999999999999999985
Q ss_pred cCCCCCCHHHHHHHHhcCCCCCCCCceEEEEeeCCC---c----EEEEECCeEEEEecccCCCccccCCCCCchhhhHHH
Q 022475 185 HGWETDNVEEIALKISQWPKASGTHKRITVITQGAD---P----VVVAEDGKVKLFPVILLPKEKLVDTNGAGDAFVGGF 257 (296)
Q Consensus 185 ~~~~~~~~~~~~~~l~~~~~~~~~g~~~vvvt~G~~---G----~~~~~~~~~~~~~~~~~~~~~vvd~tGaGDaf~ag~ 257 (296)
...+.++..++++.|. +.|++.||||.+.. . -+++++++.+.+..+.. +..+..|.||.|+|++
T Consensus 137 ~i~~~~~~~~~~~~l~------~~G~~~VvItg~~~~~~~~~~~~~l~~~~~~~~~~~~~~---~~~~~~GTGd~fss~l 207 (246)
T PF08543_consen 137 EINSEEDIEEAAKALL------ALGPKNVVITGGHLDGDEGIITDVLYDGGEFYWLSSPRI---PTGSFHGTGDLFSSAL 207 (246)
T ss_dssp --SSHHHHHHHHHHHH------HTS-SEEEEEEEEGGSSCEEEEEEEETTSEEEEEEEEEE---CTSGCTTHHHHHHHHH
T ss_pred CCCChHhHHHHHHHHH------HhCCceEEEeeeccccccccccceeeeccceeecceeEE---cCCCCCCchhHHHHHH
Confidence 5445567777888884 57899999998863 2 33446677666665544 3478899999999999
Q ss_pred HHHHhcCCCHHHHHHHhhHHhhhhhh
Q 022475 258 LSQLVQEKPVEDCVRTGCYAANVVIQ 283 (296)
Q Consensus 258 ~~~l~~~~~~~~a~~~A~~~aa~~~~ 283 (296)
++.|++|+++++|++.|...-...++
T Consensus 208 aa~l~~g~~l~~Av~~A~~~v~~~i~ 233 (246)
T PF08543_consen 208 AAFLAKGYSLEEAVEKAKNFVRRAIK 233 (246)
T ss_dssp HHHHHTTSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998887776
No 68
>cd01170 THZ_kinase 4-methyl-5-beta-hydroxyethylthiazole (Thz) kinase catalyzes the phosphorylation of the hydroxylgroup of Thz. A reaction that allows cells to recycle Thz into the thiamine biosynthesis pathway, as an alternative to its synthesis from cysteine, tyrosine and 1-deoxy-D-xylulose-5-phosphate.
Probab=99.53 E-value=2.5e-13 Score=113.39 Aligned_cols=167 Identities=15% Similarity=0.107 Sum_probs=113.0
Q ss_pred hhhhhhcceEEEEeccccc-cChHHHHHHHHHHhhCCCEEEEeCCchhhhhhhhHHHHhhcC--CCcEEEcCHHHHHHHH
Q 022475 106 IWSIVEKAKYYYIAGFFLT-VSPESIQMVAEHAAAKNKVFMMNLSAPFICEFFREPQEKALP--YMDYVFGNETEARTFA 182 (296)
Q Consensus 106 ~~~~~~~~~~~~i~g~~~~-~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~--~~dv~~~n~~E~~~l~ 182 (296)
..+.++++|.+++..-.+. ...+.+..+++.+++.++++++|+....+.....+....++. .+|+++||..|+..|+
T Consensus 43 ~~~~l~~~d~vvi~~G~l~~~~~~~i~~~~~~~~~~~~pvVlDp~~~~~~~~~~~~~~~ll~~~~~~ilTPN~~Ea~~L~ 122 (242)
T cd01170 43 VEELAKIAGALVINIGTLTSEQIEAMLKAGKAANQLGKPVVLDPVGVGATSFRTEVAKELLAEGQPTVIRGNASEIAALA 122 (242)
T ss_pred HHHHHHHcCcEEEeCCCCChHHHHHHHHHHHHHHhcCCCEEEcccccCcchhHHHHHHHHHhcCCCeEEcCCHHHHHHHh
Confidence 4456788999999632111 112445566667888899999998643221111123344454 4899999999999999
Q ss_pred HHcCCC---------CCCHHHHHHHHhcCCCCCCCCceEEEEeeCCCcEEEEECCeEEEEecccCCCccccCCCCCchhh
Q 022475 183 KVHGWE---------TDNVEEIALKISQWPKASGTHKRITVITQGADPVVVAEDGKVKLFPVILLPKEKLVDTNGAGDAF 253 (296)
Q Consensus 183 ~~~~~~---------~~~~~~~~~~l~~~~~~~~~g~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~~~vvd~tGaGDaf 253 (296)
+..... .++..+.++.+. +.+...+++| |.... ++++++.++++..+. .+.++.|+||+|
T Consensus 123 g~~~~~~~~~~~~~~~~~~~~aa~~l~------~~~~~~Vllk-G~~d~-l~~~~~~~~~~~~~~---~~~~v~GtGdtL 191 (242)
T cd01170 123 GLTGLGKGVDSSSSDEEDALELAKALA------RKYGAVVVVT-GEVDY-ITDGERVVVVKNGHP---LLTKITGTGCLL 191 (242)
T ss_pred CCCCCcCcccCCCcchHHHHHHHHHHH------HHhCCEEEEE-CCCcE-EEECCEEEEEeCCCc---cccCCCchHHHH
Confidence 754221 234566666664 2233468888 66664 557777777764332 345679999999
Q ss_pred hHHHHHHHhcCCCHHHHHHHhhHHhhhhhh
Q 022475 254 VGGFLSQLVQEKPVEDCVRTGCYAANVVIQ 283 (296)
Q Consensus 254 ~ag~~~~l~~~~~~~~a~~~A~~~aa~~~~ 283 (296)
+|++.+.+++|.++.+|+..|...-+.+.+
T Consensus 192 a~aiAa~LA~g~~~~~A~~~A~~~~~~a~~ 221 (242)
T cd01170 192 GAVIAAFLAVGDDPLEAAVSAVLVYGIAGE 221 (242)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999777666654
No 69
>PRK09517 multifunctional thiamine-phosphate pyrophosphorylase/synthase/phosphomethylpyrimidine kinase; Provisional
Probab=99.52 E-value=1.2e-13 Score=132.56 Aligned_cols=160 Identities=14% Similarity=0.151 Sum_probs=114.9
Q ss_pred ceEEEEeccccccChHHHHHHHHHHhhC-CCEEEEeCCch------hhhhhhhHHHHhhcCCCcEEEcCHHHHHHHHHHc
Q 022475 113 AKYYYIAGFFLTVSPESIQMVAEHAAAK-NKVFMMNLSAP------FICEFFREPQEKALPYMDYVFGNETEARTFAKVH 185 (296)
Q Consensus 113 ~~~~~i~g~~~~~~~~~~~~~~~~~~~~-~~~~~~d~~~~------~~~~~~~~~~~~~l~~~dv~~~n~~E~~~l~~~~ 185 (296)
.+.+-++ + -.+.+.+..+.+.+++. +.++++||... .+.....+.++.+++.+|+++||..|++.|++..
T Consensus 311 ~~aiKiG-m--L~s~e~v~~i~~~l~~~~~~~vVlDPV~~~~sG~~l~~~~~~~~l~~Llp~adlItPN~~Ea~~L~g~~ 387 (755)
T PRK09517 311 VDAVKLG-M--LGSADTVDLVASWLGSHEHGPVVLDPVMVATSGDRLLDADATEALRRLAVHVDVVTPNIPELAVLCGEA 387 (755)
T ss_pred CCEEEEC-C--CCCHHHHHHHHHHHHhCCCCCEEEecccccCCCCCCCCHHHHHHHHHHhCcccCccCCHHHHHHHhCCC
Confidence 4566663 1 23567778888888774 46689997431 1222234446678999999999999999998732
Q ss_pred C-CCCCCHHHHHHHHhcCCCCCCCCceEEEEeeCC------CcEEEEECCeEEEEecccCCCccccCCCCCchhhhHHHH
Q 022475 186 G-WETDNVEEIALKISQWPKASGTHKRITVITQGA------DPVVVAEDGKVKLFPVILLPKEKLVDTNGAGDAFVGGFL 258 (296)
Q Consensus 186 ~-~~~~~~~~~~~~l~~~~~~~~~g~~~vvvt~G~------~G~~~~~~~~~~~~~~~~~~~~~vvd~tGaGDaf~ag~~ 258 (296)
. .+.++..++++.+. ...+ ..||||.|. .++++..+++.++++.+++ +.+|++|+||+|+|+|+
T Consensus 388 ~~~~~~d~~~aa~~L~-----~~~g-~~VVVkgGh~~~~~~~~~l~~~~~~~~~~~~~~v---~~~~t~GaGDtfsaaia 458 (755)
T PRK09517 388 PAITMDEAIAQARGFA-----RTHG-TIVIVKGGHLTGDLADNAVVRPDGSVHQVENPRV---NTTNSHGTGCSLSAALA 458 (755)
T ss_pred CCCCHHHHHHHHHHHH-----HhcC-CEEEEcCCcCCCCccceEEEeCCCeEEEEeeccc---CCCCCcChHHHHHHHHH
Confidence 1 12234555666663 1234 479999984 4666655555666766544 78999999999999999
Q ss_pred HHHhcCCCHHHHHHHhhHHhhhhhhh
Q 022475 259 SQLVQEKPVEDCVRTGCYAANVVIQR 284 (296)
Q Consensus 259 ~~l~~~~~~~~a~~~A~~~aa~~~~~ 284 (296)
++|++|+++++|+++|+..-...+..
T Consensus 459 a~La~G~sl~eAv~~A~~~v~~~i~~ 484 (755)
T PRK09517 459 TLIAAGESVEKALEWATRWLNEALRH 484 (755)
T ss_pred HHHHCCCCHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999988888865
No 70
>PRK14713 multifunctional hydroxymethylpyrimidine phosphokinase/4-amino-5-aminomethyl-2-methylpyrimidine hydrolase; Provisional
Probab=99.52 E-value=2e-13 Score=126.56 Aligned_cols=158 Identities=15% Similarity=0.106 Sum_probs=106.9
Q ss_pred ceEEEEeccccccChHHHHHHHHHHhhCC-CEEEEeCCc------hhhhhhhhHHHHhhcCCCcEEEcCHHHHHHHHHHc
Q 022475 113 AKYYYIAGFFLTVSPESIQMVAEHAAAKN-KVFMMNLSA------PFICEFFREPQEKALPYMDYVFGNETEARTFAKVH 185 (296)
Q Consensus 113 ~~~~~i~g~~~~~~~~~~~~~~~~~~~~~-~~~~~d~~~------~~~~~~~~~~~~~~l~~~dv~~~n~~E~~~l~~~~ 185 (296)
.+.+.++ + -.+.+.+..+.+..++.. .++++||.. ..+.+...+.++++++++|+++||..|++.|++..
T Consensus 99 ~~aikiG-~--l~s~~~i~~v~~~l~~~~~~~vVlDPv~~~~~G~~l~~~~~~~~~~~Ll~~advItPN~~Ea~~Ltg~~ 175 (530)
T PRK14713 99 VDAVKIG-M--LGDAEVIDAVRTWLAEHRPPVVVLDPVMVATSGDRLLEEDAEAALRELVPRADLITPNLPELAVLLGEP 175 (530)
T ss_pred CCEEEEC-C--cCCHHHHHHHHHHHHhCCCCCEEECCcccCCCCCCCCCHHHHHHHHHHhhhhheecCChHHHHHHhCCC
Confidence 4666663 2 124555555555555433 358889843 12233345667789999999999999999998743
Q ss_pred C-CCCCCHHHHHHHHhcCCCCCCCCceEEEEeeCCCc-----EEEE-ECCeEEEEecccCCCccccCCCCCchhhhHHHH
Q 022475 186 G-WETDNVEEIALKISQWPKASGTHKRITVITQGADP-----VVVA-EDGKVKLFPVILLPKEKLVDTNGAGDAFVGGFL 258 (296)
Q Consensus 186 ~-~~~~~~~~~~~~l~~~~~~~~~g~~~vvvt~G~~G-----~~~~-~~~~~~~~~~~~~~~~~vvd~tGaGDaf~ag~~ 258 (296)
. .+.++..++++.+. ..+...||||.|+.+ ..++ .+++.++++.+++ +.+|++|+||+|+|+|+
T Consensus 176 ~~~~~~d~~~aa~~L~------~~~g~~VvItgG~~~~~~~~d~~~~~~~~~~~~~~~~v---~~~~t~GaGD~fsaala 246 (530)
T PRK14713 176 PATTWEEALAQARRLA------AETGTTVLVKGGHLDGQRAPDALVGPDGAVTEVPGPRV---DTRNTHGTGCSLSSALA 246 (530)
T ss_pred CCCCHHHHHHHHHHHH------HhcCCEEEEeCCCCCCCcceEEEEcCCCeEEEEeeeee---CCCCCCcHHHHHHHHHH
Confidence 2 12234455566663 222357999988642 3344 4444666665443 78999999999999999
Q ss_pred HHHhcCCCHHHHHHHhhHHhhhhh
Q 022475 259 SQLVQEKPVEDCVRTGCYAANVVI 282 (296)
Q Consensus 259 ~~l~~~~~~~~a~~~A~~~aa~~~ 282 (296)
++|++|+++++|+++|+..-...+
T Consensus 247 a~La~G~~l~eAv~~A~~~v~~~i 270 (530)
T PRK14713 247 TRLGRGGDWAAALRWATAWLHGAI 270 (530)
T ss_pred HHHHCCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999998444444
No 71
>TIGR00196 yjeF_cterm yjeF C-terminal region, hydroxyethylthiazole kinase-related. The present model may hit hydroxyethylthiazole kinase, an enzyme associated with thiamine biosynthesis.
Probab=99.48 E-value=1.8e-12 Score=110.53 Aligned_cols=215 Identities=15% Similarity=0.078 Sum_probs=132.3
Q ss_pred ecCC-chhHHHHHHHHhcCCceeEEecCCCCceeEEEEEeCCeeceeeccccccccCccccC--ChhhhhhhhcceEEEE
Q 022475 42 IGKD-KFGEEMKKNSTAAGVNVKYYEDESAPTGTCAVCVVGGERSLVANLSAANCYKSEHLK--RPEIWSIVEKAKYYYI 118 (296)
Q Consensus 42 vG~D-~~g~~i~~~l~~~gi~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i 118 (296)
=|+| ..|..++..++..++.+.+++....+.. ...+.... +.+....+. ..+..+.+...|++++
T Consensus 31 aGs~~~~GA~ila~l~~~~~g~~~v~~~~~~~~----------~~~i~~~~--pe~~~~~~~~~~~~~~~~~~~~davvi 98 (272)
T TIGR00196 31 GGSDDYSGAPLLAALAALRAGAGLVTVAAPENV----------ITLINSVS--PELIVHRLGWKVDEDEELLERYDVVVI 98 (272)
T ss_pred eCCCCCCcHHHHHHHHHHHhCCCeEEEEEchhh----------HHHHhhcC--CEEEEecchhhHHHHHhhhccCCEEEE
Confidence 3445 5788899999988876666532111110 00000000 111111111 1122344578899999
Q ss_pred eccccccChHHHHHHHHHHhhCCCEEEEeCCchhhhhhhhHHHHhhcCCCcEEEcCHHHHHHHHHHcCCCCCCHHHHHHH
Q 022475 119 AGFFLTVSPESIQMVAEHAAAKNKVFMMNLSAPFICEFFREPQEKALPYMDYVFGNETEARTFAKVHGWETDNVEEIALK 198 (296)
Q Consensus 119 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~dv~~~n~~E~~~l~~~~~~~~~~~~~~~~~ 198 (296)
++-.. +.+.+..+++.+++.+.++++|+....+... ........++++||..|++.|++....+.++..++++.
T Consensus 99 g~Gl~--~~~~~~~l~~~~~~~~~pvVlDa~g~~l~~~----~~~~~~~~~vItPN~~El~~L~g~~~~~~~~~~~aa~~ 172 (272)
T TIGR00196 99 GPGLG--QDPSFKKAVEEVLELDKPVVLDADALNLLTY----DKPKREGEVILTPHPGEFKRLLGLVNEIQGDRLEAAQD 172 (272)
T ss_pred cCCCC--CCHHHHHHHHHHHhcCCCEEEEhHHHHHHhh----cccccCCCEEECCCHHHHHHHhCCchhhhhhHHHHHHH
Confidence 76321 2344777888888889999999865432111 10113458999999999999987533334456666777
Q ss_pred HhcCCCCCCCCceEEEEeeCCCcEEEEECCeEEEEecccCCCccccCCCCCchhhhHHHHHHHhcCCCHHHHHHHh---h
Q 022475 199 ISQWPKASGTHKRITVITQGADPVVVAEDGKVKLFPVILLPKEKLVDTNGAGDAFVGGFLSQLVQEKPVEDCVRTG---C 275 (296)
Q Consensus 199 l~~~~~~~~~g~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~~~vvd~tGaGDaf~ag~~~~l~~~~~~~~a~~~A---~ 275 (296)
+. +. ...+|++.|.++.++..++..+..+ .+. ...+++|+||+++|.+.+.+++|.++.+|+..| +
T Consensus 173 l~------~~-~~~vVv~kG~~~~i~~~~~~~~~~~-~~~---~~~~~~GaGD~lag~iaa~la~g~~~~~A~~~a~~~~ 241 (272)
T TIGR00196 173 IA------QK-LQAVVVLKGAADVIAAPDGDLWINK-TGN---AALAKGGTGDVLAGLIGGLLAQNLDPFDAACNAAFAH 241 (272)
T ss_pred HH------HH-hCCEEEEcCCCCEEEcCCCeEEEEC-CCC---CccCCCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 64 22 2357788899998765445555443 222 578899999996666666677999999999777 7
Q ss_pred HHhhhhhhhc
Q 022475 276 YAANVVIQRS 285 (296)
Q Consensus 276 ~~aa~~~~~~ 285 (296)
..|+..+.+.
T Consensus 242 ~~a~~~~~~~ 251 (272)
T TIGR00196 242 GLAGDLALKN 251 (272)
T ss_pred HHHHHHHHHh
Confidence 7777766443
No 72
>KOG3009 consensus Predicted carbohydrate kinase, contains PfkB domain [General function prediction only]
Probab=99.46 E-value=6.9e-13 Score=114.65 Aligned_cols=218 Identities=18% Similarity=0.214 Sum_probs=143.0
Q ss_pred cCCCceeecCChhHHHHHHHHHhhcCCCcEEEEEeecCCchhHHHHHHHHhcCCceeEEecCCCCceeEEEEEeCCeece
Q 022475 7 SKENVEYIAGGATQNSIKVAQWMLQIPGATSYIGCIGKDKFGEEMKKNSTAAGVNVKYYEDESAPTGTCAVCVVGGERSL 86 (296)
Q Consensus 7 ~~~~~~~~~GG~~~n~a~~~~~l~~lg~~v~~~~~vG~D~~g~~i~~~l~~~gi~~~~~~~~~~~t~~~~~~~~~~~~~~ 86 (296)
+.....+.+||.+.|.|.++++ +|.++.++++||+|..+++.+
T Consensus 368 y~~~~~Qa~GGVarN~A~a~~~---lg~d~~liSavG~d~n~~~~~---------------------------------- 410 (614)
T KOG3009|consen 368 YNGQVVQAMGGVARNHADALAR---LGCDSVLISAVGDDNNGHFFR---------------------------------- 410 (614)
T ss_pred ccchhhhhccchhhhHHHHHHH---hcCCeeEEEEeccCCcchhhh----------------------------------
Confidence 3456678899999999999886 459999999999993221111
Q ss_pred eeccccccccCccccCChhhhhhhhcceEEEEeccccccChHHHHHHHHHHhhCCCEEEEeCCchhhhhhhhHHHHhhcC
Q 022475 87 VANLSAANCYKSEHLKRPEIWSIVEKAKYYYIAGFFLTVSPESIQMVAEHAAAKNKVFMMNLSAPFICEFFREPQEKALP 166 (296)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~ 166 (296)
. .+.+.++. -+.+.+++++++++ ++++..+..+++ ++.+.+++.|+|-.-.. ....++-++-
T Consensus 411 --~------~~~~~~e~---~~dl~~a~~I~~Ds---NiS~~~Ma~il~-ak~~k~~V~fEPTd~~k---~~K~fk~l~v 472 (614)
T KOG3009|consen 411 --Q------NSHKIVES---NEDLLSADFILLDS---NISVPVMARILE-AKKHKKQVWFEPTDIDK---VKKVFKTLLV 472 (614)
T ss_pred --h------hhhhhhhh---hhhhhcCCEEEEcC---CCCHHHHHHHHH-hhhccCceEecCCCchh---hhhhhhhcce
Confidence 0 00111110 01234799999987 889999999999 88889999999865332 1222222222
Q ss_pred -CCcEEEcCHHHHHHHHHHcCCC--C------CCHHHHHHHHhcCCCCCCCCceEEEEeeCCCcEEEEECCe-----EEE
Q 022475 167 -YMDYVFGNETEARTFAKVHGWE--T------DNVEEIALKISQWPKASGTHKRITVITQGADPVVVAEDGK-----VKL 232 (296)
Q Consensus 167 -~~dv~~~n~~E~~~l~~~~~~~--~------~~~~~~~~~l~~~~~~~~~g~~~vvvt~G~~G~~~~~~~~-----~~~ 232 (296)
..+.+.||..|+-.....++.. + +...+..+...+ +.......+|+|.-.+|+++...++ ...
T Consensus 473 ~~i~~i~PN~~Ell~a~k~~~v~~nps~~q~~~~~~~~~~~~~~---k~~~~~s~~I~tl~~~G~l~~yr~k~g~l~~~s 549 (614)
T KOG3009|consen 473 GAITAISPNANELLKAAKLCHVSVNPSVIQTADGVLELIEKEKT---KLLLNTSIFIVTLANKGSLVVYRNKLGQLEFQS 549 (614)
T ss_pred eeEEeeCCCHHHHHHHhhcCceeeChhhhccchHHHHHHHHHHH---HhhcccceEEEEeccCceEEEecCCCCCccccc
Confidence 3688899999985444333322 1 112222222211 0234456789999999988764443 223
Q ss_pred EecccCCCccccCCCCCchhhhHHHHHHHhcCCCHHHHHHHhhHHhhhhhh
Q 022475 233 FPVILLPKEKLVDTNGAGDAFVGGFLSQLVQEKPVEDCVRTGCYAANVVIQ 283 (296)
Q Consensus 233 ~~~~~~~~~~vvd~tGaGDaf~ag~~~~l~~~~~~~~a~~~A~~~aa~~~~ 283 (296)
.+++.. --++++..||||+|.+||+.+++++.++.+++.-+..++...++
T Consensus 550 ~~p~~~-~~n~vsvsgaGdsf~~g~i~~l~~~~~v~es~~gg~~~~ralls 599 (614)
T KOG3009|consen 550 LPPPLQ-MNNVVSVSGAGDSFNSGVIAGLAHNKTVVESLQGGQECARALLS 599 (614)
T ss_pred CCCccc-ccceeEeccCCcccccceeehhhcCcchHhhccccHHHHHHHHh
Confidence 333222 23799999999999999999999999999999999666555444
No 73
>PLN02978 pyridoxal kinase
Probab=99.46 E-value=1.6e-12 Score=112.51 Aligned_cols=147 Identities=12% Similarity=0.096 Sum_probs=99.8
Q ss_pred HHHHHHHHHHhh--CCCEEEEeCCchh----h-hhhhhHHHH-hhcCCCcEEEcCHHHHHHHHHHcCCCCCCHHHHHHHH
Q 022475 128 ESIQMVAEHAAA--KNKVFMMNLSAPF----I-CEFFREPQE-KALPYMDYVFGNETEARTFAKVHGWETDNVEEIALKI 199 (296)
Q Consensus 128 ~~~~~~~~~~~~--~~~~~~~d~~~~~----~-~~~~~~~~~-~~l~~~dv~~~n~~E~~~l~~~~~~~~~~~~~~~~~l 199 (296)
+.+.++++.+++ .+.++++||.... | .....+.++ .+++++|+++||..|++.|++....+.++..++++.+
T Consensus 102 ~~v~~~l~~~~~~~~~~~vvlDPvm~d~G~l~~~~~~~~~~~~~ll~~adiitPN~~Ea~~L~g~~~~~~~~~~~a~~~l 181 (308)
T PLN02978 102 RTVLRVVKKLRSVNPNLTYVCDPVLGDEGKLYVPPELVPVYREKVVPLATMLTPNQFEAEQLTGIRIVTEEDAREACAIL 181 (308)
T ss_pred HHHHHHHHHHHHhCCCCeEEECCcccCCCCccCChhHHHHHHHHHHhhCCeeccCHHHHHHHhCCCCCCHHHHHHHHHHH
Confidence 455666666665 3467888985321 1 122334454 5899999999999999999874322233455667777
Q ss_pred hcCCCCCCCCceEEEEeeCC-CcEEEE-E--------CCeEEEEecccCCCccccCCCCCchhhhHHHHHHHhcC-CCHH
Q 022475 200 SQWPKASGTHKRITVITQGA-DPVVVA-E--------DGKVKLFPVILLPKEKLVDTNGAGDAFVGGFLSQLVQE-KPVE 268 (296)
Q Consensus 200 ~~~~~~~~~g~~~vvvt~G~-~G~~~~-~--------~~~~~~~~~~~~~~~~vvd~tGaGDaf~ag~~~~l~~~-~~~~ 268 (296)
...|++.||||.+. .|.... . .++.+++..+++ +.. ++|+||+|+|.+++.+.+| .+++
T Consensus 182 ------~~~g~~~VVITs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i---~~~-~~GtGD~fsA~laa~l~~g~~~l~ 251 (308)
T PLN02978 182 ------HAAGPSKVVITSIDIDGKLLLVGSHRKEKGARPEQFKIVIPKI---PAY-FTGTGDLMAALLLGWSHKYPDNLD 251 (308)
T ss_pred ------HHhCCCEEEEEEecCCCCEEEEEecccccCCCCceEEEEccCC---CCC-CCCchHHHHHHHHHHHhcCCcCHH
Confidence 45678899998754 343322 1 124555555443 444 5899999999888888887 7999
Q ss_pred HHHHHhhHHhhhhhhh
Q 022475 269 DCVRTGCYAANVVIQR 284 (296)
Q Consensus 269 ~a~~~A~~~aa~~~~~ 284 (296)
+|++.|...-...++.
T Consensus 252 ~A~~~A~~~v~~~i~~ 267 (308)
T PLN02978 252 KAAELAVSSLQAVLRR 267 (308)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999888777765
No 74
>PTZ00493 phosphomethylpyrimidine kinase; Provisional
Probab=99.28 E-value=1.2e-10 Score=99.92 Aligned_cols=161 Identities=9% Similarity=0.033 Sum_probs=105.8
Q ss_pred ceEEEEeccccccChHHHHHHHHHHhhC------CCEEEEeCCchh-----h-h-hhh-hHHHHhhcCCCcEEEcCHHHH
Q 022475 113 AKYYYIAGFFLTVSPESIQMVAEHAAAK------NKVFMMNLSAPF-----I-C-EFF-REPQEKALPYMDYVFGNETEA 178 (296)
Q Consensus 113 ~~~~~i~g~~~~~~~~~~~~~~~~~~~~------~~~~~~d~~~~~-----~-~-~~~-~~~~~~~l~~~dv~~~n~~E~ 178 (296)
.+.+=++ +-.+.+.++.+.+..++. ..++++||-... + . ... ....+.++|++++++||..|+
T Consensus 74 i~aIKiG---mL~s~e~i~~v~~~l~~~~~~~~~~~~vVlDPVl~sssG~~L~~~~~~~~~~~~~Llp~a~viTPN~~Ea 150 (321)
T PTZ00493 74 IDVVKLG---VLYSKKIISLVHNYITNMNKKRGKKLLVVFDPVFVSSSGCLLVENLEYIKFALDLICPISCIITPNFYEC 150 (321)
T ss_pred CCEEEEC---CcCCHHHHHHHHHHHHHhcccccCCCeEEECCceEECCCCccCCcHHHHHHHHHHhhccCEEECCCHHHH
Confidence 3555553 122556667776666543 224889983211 1 1 112 222356999999999999999
Q ss_pred HHHHHH----cCCCCCCHHHHHHHHhcCCCCCCCCceEEEEeeCCCc------E------EEEE-------C--------
Q 022475 179 RTFAKV----HGWETDNVEEIALKISQWPKASGTHKRITVITQGADP------V------VVAE-------D-------- 227 (296)
Q Consensus 179 ~~l~~~----~~~~~~~~~~~~~~l~~~~~~~~~g~~~vvvt~G~~G------~------~~~~-------~-------- 227 (296)
+.|.+. ...+.++..++++.+. ...|++.|++|-|+.. . +++. .
T Consensus 151 ~~L~g~~~~~~~~~~~~~~~aA~~l~-----~~~G~~~VliKGGh~~~~~~~~~~~~~~D~l~~~~~~~~~~~~~~~~~~ 225 (321)
T PTZ00493 151 KVILEALDCQMDLSKANMTELCKLVT-----EKLNINACLFKSCNVGENSAEENEVYAVDHLCIRNVGSYPTGEKQQIDA 225 (321)
T ss_pred HHHhCCCcccCCCCHHHHHHHHHHHH-----HhcCCCEEEECcCCCcccccccccccceeEEecCCcccccccccccccc
Confidence 999861 1123445667777774 2368899999987632 1 2322 1
Q ss_pred C------eEEEEecccCCCccccCCCCCchhhhHHHHHHHhcCCCHHHHHHHhhHHhhhhhhh
Q 022475 228 G------KVKLFPVILLPKEKLVDTNGAGDAFVGGFLSQLVQEKPVEDCVRTGCYAANVVIQR 284 (296)
Q Consensus 228 ~------~~~~~~~~~~~~~~vvd~tGaGDaf~ag~~~~l~~~~~~~~a~~~A~~~aa~~~~~ 284 (296)
+ +.+++..+ ++...++.|.||+|++++++.|++|+++++|++.|...-..++..
T Consensus 226 ~~~~~~~~~~~~~~~---ri~~~~~hGTGc~fASAIAa~LA~G~~l~~Av~~A~~fv~~aI~~ 285 (321)
T PTZ00493 226 GGVTYLYDVYKLRSK---RKPGKDIHGTGCTLSTAIACYLAKKHNILQSCIESKKYIYNCIRY 285 (321)
T ss_pred ccccccceEEEEEec---ccCCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 1 12334332 234567899999999999999999999999999999888777765
No 75
>COG2240 PdxK Pyridoxal/pyridoxine/pyridoxamine kinase [Coenzyme metabolism]
Probab=99.26 E-value=1e-10 Score=96.96 Aligned_cols=163 Identities=15% Similarity=0.147 Sum_probs=112.1
Q ss_pred hhhcceEEEEecccc-ccChHHHHHHHHHHhhCCC--EEEEeCCchh-----hhhhhhHHHH-hhcCCCcEEEcCHHHHH
Q 022475 109 IVEKAKYYYIAGFFL-TVSPESIQMVAEHAAAKNK--VFMMNLSAPF-----ICEFFREPQE-KALPYMDYVFGNETEAR 179 (296)
Q Consensus 109 ~~~~~~~~~i~g~~~-~~~~~~~~~~~~~~~~~~~--~~~~d~~~~~-----~~~~~~~~~~-~~l~~~dv~~~n~~E~~ 179 (296)
.+.+.|.++. ||.. ...-..+..+++..|+.+. .+++||-... ......+... .++|.+|+++||.-|++
T Consensus 70 ~~~~~davlt-GYlgs~~qv~~i~~~v~~vk~~~P~~~~l~DPVMGD~gglYV~~~~~~~~~~~lip~AdiiTPN~fELe 148 (281)
T COG2240 70 KLGECDAVLT-GYLGSAEQVRAIAGIVKAVKEANPNALYLCDPVMGDPGGLYVAPEVAEAYRDELLPLADIITPNIFELE 148 (281)
T ss_pred cccccCEEEE-ccCCCHHHHHHHHHHHHHHhccCCCeEEEeCCcccCCCceeeccchHHHHHHhhcchhhEeCCCHHHHH
Confidence 4667888765 5543 2223456666777776653 3677773211 1222333333 68999999999999999
Q ss_pred HHHHHcCCCCCCHHHHHHHHhcCCCCCCCCceEEEEeeCC-----CcEEEEECCe---EEEEecccCCCccccCCCCCch
Q 022475 180 TFAKVHGWETDNVEEIALKISQWPKASGTHKRITVITQGA-----DPVVVAEDGK---VKLFPVILLPKEKLVDTNGAGD 251 (296)
Q Consensus 180 ~l~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~vvvt~G~-----~G~~~~~~~~---~~~~~~~~~~~~~vvd~tGaGD 251 (296)
.|++..-.+.++..++++.| ...|++.+|||.=. .|.+++.... .+|.. +.+ ..+++|.||
T Consensus 149 ~Ltg~~~~~~~da~~aa~~L------~~~gp~~vlVTS~~~~~~~~~~~~~~~~~~~~~~h~~-~~v----~~~~~GtGD 217 (281)
T COG2240 149 ILTGKPLNTLDDAVKAARKL------GADGPKIVLVTSLSRAGMSTGNFEMLGKSAELAWHIS-PLV----PFIPNGTGD 217 (281)
T ss_pred HHhCCCCCCHHHHHHHHHHH------hhcCCCEEEEecccccCCCCceEEEeccchhhhhhhh-hcC----CCCCCCchH
Confidence 99987755566777777777 45788999999533 3455544332 23332 233 345999999
Q ss_pred hhhHHHHHHHhcCCCHHHHHHHhhHHhhhhhh
Q 022475 252 AFVGGFLSQLVQEKPVEDCVRTGCYAANVVIQ 283 (296)
Q Consensus 252 af~ag~~~~l~~~~~~~~a~~~A~~~aa~~~~ 283 (296)
.|+|-|++.+++|.++++|+..+..+-...++
T Consensus 218 L~sallla~lL~g~~~~~al~~~~~~V~evl~ 249 (281)
T COG2240 218 LFSALLLARLLEGLSLTQALERATAAVYEVLQ 249 (281)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999888777666
No 76
>PRK09355 hydroxyethylthiazole kinase; Validated
Probab=99.20 E-value=7.5e-10 Score=93.69 Aligned_cols=164 Identities=15% Similarity=0.105 Sum_probs=105.9
Q ss_pred hhhhhhcceEEEEeccccccChHH---HHHHHHHHhhCCCEEEEeCCchhhhhhhhHHHHhhcC--CCcEEEcCHHHHHH
Q 022475 106 IWSIVEKAKYYYIAGFFLTVSPES---IQMVAEHAAAKNKVFMMNLSAPFICEFFREPQEKALP--YMDYVFGNETEART 180 (296)
Q Consensus 106 ~~~~~~~~~~~~i~g~~~~~~~~~---~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~--~~dv~~~n~~E~~~ 180 (296)
..+....+|.+++.-- ...++. +..+++.+++.++++++|+..........+..+.+++ +.++++||..|+..
T Consensus 48 ~~~~~~~~~alvi~~G--~l~~~~~~~i~~~~~~a~~~~~pvVlDpv~~~~~~~~~~~~~~ll~~~~~~vItPN~~E~~~ 125 (263)
T PRK09355 48 AEEMAKIAGALVINIG--TLTEERIEAMLAAGKIANEAGKPVVLDPVGVGATSYRTEFALELLAEVKPAVIRGNASEIAA 125 (263)
T ss_pred HHHHHHhcCceEEeCC--CCCHHHHHHHHHHHHHHHhcCCCEEECCcccCcchhhHHHHHHHHHhcCCcEecCCHHHHHH
Confidence 4455678899999531 123333 4445566778889999998653222112222333343 67999999999999
Q ss_pred HHHHcC----CC----CCCHHHHHHHHhcCCCCCCCCceEEEEeeCCCcEEEEECCeEEEEecccCCCccccCCCCCchh
Q 022475 181 FAKVHG----WE----TDNVEEIALKISQWPKASGTHKRITVITQGADPVVVAEDGKVKLFPVILLPKEKLVDTNGAGDA 252 (296)
Q Consensus 181 l~~~~~----~~----~~~~~~~~~~l~~~~~~~~~g~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~~~vvd~tGaGDa 252 (296)
|.+... .+ .++..+.++.+. +.+...+++|-+.+ +++++++.+.+..-. + ...+.+|+||+
T Consensus 126 L~g~~~~~~~vd~~~~~~~~~~~a~~la------~~~~~~VvvkG~~d--~I~~~~~~~~~~~g~-~--~~~~v~GtGc~ 194 (263)
T PRK09355 126 LAGEAAETKGVDSTDGSADAVEIAKAAA------KKYGTVVVVTGEVD--YITDGERVVSVHNGH-P--LMTKVTGTGCL 194 (263)
T ss_pred HhCCCcccCCcCCCCCHHHHHHHHHHHH------HHhCCEEEEECCCc--EEEeCCEEEEEeCCC-c--ccCCcccccHH
Confidence 987431 11 124556666664 22234688884443 344566666665221 1 35566999999
Q ss_pred hhHHHHHHHhcCCCHHHHHHHhhHHhhhhh
Q 022475 253 FVGGFLSQLVQEKPVEDCVRTGCYAANVVI 282 (296)
Q Consensus 253 f~ag~~~~l~~~~~~~~a~~~A~~~aa~~~ 282 (296)
+.|.+.+.++.+.++.+|+..|...-+.+.
T Consensus 195 L~~~iaa~lA~g~~~~~A~~~A~~~~~~a~ 224 (263)
T PRK09355 195 LSAVVAAFAAVEKDYLEAAAAACAVYGIAG 224 (263)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999988887766654
No 77
>TIGR00694 thiM hydroxyethylthiazole kinase. This model represents the hydoxyethylthiazole kinase, ThiM, of a number of bacteria, and C-terminal domains of bifunctional thiamine biosynthesis proteins of Saccharomyces cerevisiae and Schizosaccharomyces pombe, in which the N-terminal domain corresponds to the bacterial thiamine-phosphate pyrophosphorylase (EC 2.5.1.3), ThiE.
Probab=99.06 E-value=4.4e-09 Score=88.32 Aligned_cols=164 Identities=15% Similarity=0.063 Sum_probs=103.8
Q ss_pred hhhhhhcceEEEEeccccccCh---HHHHHHHHHHhhCCCEEEEeCCchhhhhhhhHHHHhhcC--CCcEEEcCHHHHHH
Q 022475 106 IWSIVEKAKYYYIAGFFLTVSP---ESIQMVAEHAAAKNKVFMMNLSAPFICEFFREPQEKALP--YMDYVFGNETEART 180 (296)
Q Consensus 106 ~~~~~~~~~~~~i~g~~~~~~~---~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~--~~dv~~~n~~E~~~ 180 (296)
..+....++.+++.--.+ .+ +.+..+++.+++.++++++||..-.......+..+.+++ +.++|+||..|+..
T Consensus 43 ~~~~~~~~~al~ik~G~l--~~~~~~~i~~~~~~~~~~~~pvVlDPV~~~~s~~r~~~~~~Ll~~~~~~vITpN~~E~~~ 120 (249)
T TIGR00694 43 VAELAKIAGALVINIGTL--DKESIEAMIAAGKSANELGVPVVLDPVGVGATKFRTETALELLSEGRFAAIRGNAGEIAS 120 (249)
T ss_pred HHHHHHHcCceEEeCCCC--CHHHHHHHHHHHHHHHhcCCCEEEcccccccchhHHHHHHHHHhhcCCceeCCCHHHHHH
Confidence 445567789998864222 33 344455666777789999998543322111233345555 47999999999999
Q ss_pred HHHHc----CC----CCCCHHHHHHHHhcCCCCCCCCceEEEEeeCCCcEEEEECCeEEEEecccCCCccccCCCCCchh
Q 022475 181 FAKVH----GW----ETDNVEEIALKISQWPKASGTHKRITVITQGADPVVVAEDGKVKLFPVILLPKEKLVDTNGAGDA 252 (296)
Q Consensus 181 l~~~~----~~----~~~~~~~~~~~l~~~~~~~~~g~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~~~vvd~tGaGDa 252 (296)
|++.. +. +.++..+.++.+. ...++ .|++|-+ .- +++++++.+.+..-+. ..-..+|.||+
T Consensus 121 L~g~~~~~~gvd~~~~~~d~~~~a~~la-----~~~~~-~VllkG~-~D-~i~~~~~~~~~~~g~~---~~~~~~GtGc~ 189 (249)
T TIGR00694 121 LAGETGLMKGVDSGEGAADAIRAAQQAA-----QKYGT-VVVITGE-VD-YVSDGTSVYTIHNGTE---LLGKITGSGCL 189 (249)
T ss_pred HhCCCCCCCCcCCccchHHHHHHHHHHH-----HHhCC-EEEEECC-Cc-EEEeCCEEEEECCCCh---HHhCCccchHH
Confidence 98742 11 1224555666664 22344 6777644 33 3456666655432111 12225899999
Q ss_pred hhHHHHHHHhcCCCHHHHHHHhhHHhhhhh
Q 022475 253 FVGGFLSQLVQEKPVEDCVRTGCYAANVVI 282 (296)
Q Consensus 253 f~ag~~~~l~~~~~~~~a~~~A~~~aa~~~ 282 (296)
+.+.+.+.+++|.++.+|+..|...-..+.
T Consensus 190 LssaIaa~LA~g~~~~~A~~~A~~~~~~a~ 219 (249)
T TIGR00694 190 LGSVVAAFCAVEEDPLDAAISACLLYKIAG 219 (249)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999998875554444
No 78
>KOG2598 consensus Phosphomethylpyrimidine kinase [Coenzyme transport and metabolism; Transcription]
Probab=98.73 E-value=1.7e-07 Score=81.34 Aligned_cols=150 Identities=17% Similarity=0.178 Sum_probs=105.8
Q ss_pred ChHHHHHHHHHHhhCCC-EEEEeCC-----chhh--hhhhhHHHHhhcCCCcEEEcCHHHHHHHHHHcCCC------CCC
Q 022475 126 SPESIQMVAEHAAAKNK-VFMMNLS-----APFI--CEFFREPQEKALPYMDYVFGNETEARTFAKVHGWE------TDN 191 (296)
Q Consensus 126 ~~~~~~~~~~~~~~~~~-~~~~d~~-----~~~~--~~~~~~~~~~~l~~~dv~~~n~~E~~~l~~~~~~~------~~~ 191 (296)
+++.+.-+.+.+.+.++ ++++|+- .... .+...-..++++|.+|++.+|..|+-.|.+....+ ..+
T Consensus 103 ~~~I~~vi~q~l~~~~~~klVvDPVivatsG~~l~~~divsl~~e~l~P~adiltPNI~Ea~~Ll~~~~~~~~~i~~v~d 182 (523)
T KOG2598|consen 103 SPEIVKVIEQSLQKFNIPKLVVDPVIVATSGSSLAGKDIVSLFIEELLPFADILTPNIPEAFILLKKEKREISKIQSVFD 182 (523)
T ss_pred chHHHHHHHHHHHhhcCcceeecceEEeccCCcccCCccHHHHHHHhhhhHHHhCCChHHHHHHHhhcccCCcccccHHH
Confidence 44555555555555554 4777761 1111 23344457789999999999999999998742221 234
Q ss_pred HHHHHHHHhcCCCCCCCCceEEEEeeCCCcEE-----------------EEECCeEEEEecccCCCccccCCCCCchhhh
Q 022475 192 VEEIALKISQWPKASGTHKRITVITQGADPVV-----------------VAEDGKVKLFPVILLPKEKLVDTNGAGDAFV 254 (296)
Q Consensus 192 ~~~~~~~l~~~~~~~~~g~~~vvvt~G~~G~~-----------------~~~~~~~~~~~~~~~~~~~vvd~tGaGDaf~ 254 (296)
.+..++.+ .+.|+++|+++.|.-+.- ++++.+++.++.+- ++-..+.|.|.+++
T Consensus 183 i~~~~~~i------hk~gpk~VlvkGghiP~~~~~~~s~d~~~~~~~DvlydG~~F~~f~~~~---~~t~~tHGtgCtLa 253 (523)
T KOG2598|consen 183 IAKDAAKI------HKLGPKNVLVKGGHIPFNKNMMTSKDDSDKYTVDVLYDGKEFYIFKSPY---LATKHTHGTGCTLA 253 (523)
T ss_pred HHHHHHHH------HhcCcceEEEeCCCcCccccccccCcccCCceEEEEEecceEEEecccc---cccccccCccchHH
Confidence 55555666 678899999998864322 34565666666543 47889999999999
Q ss_pred HHHHHHHhcCCCHHHHHHHhhHHhhhhhhh
Q 022475 255 GGFLSQLVQEKPVEDCVRTGCYAANVVIQR 284 (296)
Q Consensus 255 ag~~~~l~~~~~~~~a~~~A~~~aa~~~~~ 284 (296)
++++..|++|.++.+|+..|...--.+++.
T Consensus 254 SAIASnLA~g~sl~qAv~~ai~yvq~Ai~~ 283 (523)
T KOG2598|consen 254 SAIASNLARGYSLLQAVQGAIEYVQNAIAI 283 (523)
T ss_pred HHHHHHHhhcCCHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999998877666653
No 79
>KOG2599 consensus Pyridoxal/pyridoxine/pyridoxamine kinase [Coenzyme transport and metabolism]
Probab=98.62 E-value=4e-07 Score=74.39 Aligned_cols=157 Identities=15% Similarity=0.144 Sum_probs=97.4
Q ss_pred hhcceEEEEeccccccC-hHHHHHHHHHHhhCCC--EEEEeCCch----hh-hhhhhHHHHh-hcCCCcEEEcCHHHHHH
Q 022475 110 VEKAKYYYIAGFFLTVS-PESIQMVAEHAAAKNK--VFMMNLSAP----FI-CEFFREPQEK-ALPYMDYVFGNETEART 180 (296)
Q Consensus 110 ~~~~~~~~i~g~~~~~~-~~~~~~~~~~~~~~~~--~~~~d~~~~----~~-~~~~~~~~~~-~l~~~dv~~~n~~E~~~ 180 (296)
+...|.+ ++||..+.+ -..+.++....++.+. ..++||-.. .+ ........++ +.+.+|+++||.-|++.
T Consensus 79 ~~~Y~~v-LTGY~~n~~~l~~i~~iv~~lk~~np~~~wv~DPVmGDnG~lYV~eelipvYr~~i~~ladiiTPNqFE~Ei 157 (308)
T KOG2599|consen 79 LNKYDAV-LTGYLPNVSFLQKIADIVKKLKKKNPNLTWVCDPVMGDNGRLYVPEELIPVYRDLIIPLADIITPNQFEAEI 157 (308)
T ss_pred cccccee-eeeccCChhHHHHHHHHHHHHHhcCCCeEEEeCccccCCccEeccHHHHHHHHHhhcchhhhcCCcchhhhh
Confidence 3456665 456655333 2455556666666553 467777321 11 1222233333 44569999999999999
Q ss_pred HHHHcCCCCCCHHHHHHHHhcCCCCCCCCceEEEEeeCCC----c-EEEE---E-CCeEEEEecccCCCccccCCCCCch
Q 022475 181 FAKVHGWETDNVEEIALKISQWPKASGTHKRITVITQGAD----P-VVVA---E-DGKVKLFPVILLPKEKLVDTNGAGD 251 (296)
Q Consensus 181 l~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~vvvt~G~~----G-~~~~---~-~~~~~~~~~~~~~~~~vvd~tGaGD 251 (296)
|++....+.++..++++.+ ..+|++.+|||...- | .++. + +.+.+++..+.+ .-=.||.||
T Consensus 158 Ltg~~I~t~eda~~a~~~l------hq~~v~~vVITS~~~~~~~g~~l~c~gs~~~~~~f~~~ipki----~~~FtGTGD 227 (308)
T KOG2599|consen 158 LTGMEIRTEEDAKRAVEKL------HQKGVKTVVITSFDLGEFTGETLRCIGSSCGSERFRYLIPKI----DGVFTGTGD 227 (308)
T ss_pred hcCCeeccHHHHHHHHHHH------HHhCCCEEEEEeeeeCCCCCcEEEEEEeccCCceEEEEeccc----ceEEecccH
Confidence 9998877778888888888 577899999997543 3 1211 2 223444433222 122489999
Q ss_pred hhhHHHHHHHhcC---CCHHHHHHHhhHH
Q 022475 252 AFVGGFLSQLVQE---KPVEDCVRTGCYA 277 (296)
Q Consensus 252 af~ag~~~~l~~~---~~~~~a~~~A~~~ 277 (296)
.|+|-+++.+..- .++..++..+...
T Consensus 228 LfsaLLla~~~~~~~~~~l~~a~e~~ls~ 256 (308)
T KOG2599|consen 228 LFSALLLAWLHESPDNDDLSKAVEQVLSS 256 (308)
T ss_pred HHHHHHHHHHhcCCCcchHHHHHHHHHHH
Confidence 9999998888664 4566666555443
No 80
>PRK03979 ADP-specific phosphofructokinase; Provisional
Probab=98.40 E-value=6.4e-05 Score=67.56 Aligned_cols=75 Identities=15% Similarity=0.046 Sum_probs=52.1
Q ss_pred hcceEEEEeccccccC---h--------HHHHHHHHHHhh--CCCEEEEeCCchhhhhhhhHHHHhhcCCCcEEEcCHHH
Q 022475 111 EKAKYYYIAGFFLTVS---P--------ESIQMVAEHAAA--KNKVFMMNLSAPFICEFFREPQEKALPYMDYVFGNETE 177 (296)
Q Consensus 111 ~~~~~~~i~g~~~~~~---~--------~~~~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~~~~~l~~~dv~~~n~~E 177 (296)
..+|+++++|++.... . +.+.+.++..++ .++++.+...+-.........+..+++++|-+-+|+.|
T Consensus 221 ~~~D~avlSG~q~i~~~y~dg~~~~~~l~r~~~~i~~L~~~~~~i~iH~E~As~~~~~ir~~i~~~ilp~vDSlGmNE~E 300 (463)
T PRK03979 221 KMVDGAILSGYQGIKEEYSDGKTAEYYLKRAKEDIKLLKKKNKDIKIHVEFASIQNREIRKKIITYILPHVDSVGMDETE 300 (463)
T ss_pred cCCCEEEEechhhhhccccccccHHHHHHHHHHHHHHHhhCCCCceEEEEeccccCHHHHHHHHHhhccccccccCCHHH
Confidence 3499999999984322 1 122333333433 45788888866554455667777899999999999999
Q ss_pred HHHHHHHc
Q 022475 178 ARTFAKVH 185 (296)
Q Consensus 178 ~~~l~~~~ 185 (296)
+..+....
T Consensus 301 La~l~~~l 308 (463)
T PRK03979 301 IANILNVL 308 (463)
T ss_pred HHHHHHHh
Confidence 99887654
No 81
>PRK14039 ADP-dependent glucokinase; Provisional
Probab=98.26 E-value=0.00013 Score=65.41 Aligned_cols=75 Identities=19% Similarity=0.110 Sum_probs=53.7
Q ss_pred cceEEEEeccccccC--------hHHHHHHH---HHHhh--CCCEEEEeCCchhhhhhhhHHHHhhcCCCcEEEcCHHHH
Q 022475 112 KAKYYYIAGFFLTVS--------PESIQMVA---EHAAA--KNKVFMMNLSAPFICEFFREPQEKALPYMDYVFGNETEA 178 (296)
Q Consensus 112 ~~~~~~i~g~~~~~~--------~~~~~~~~---~~~~~--~~~~~~~d~~~~~~~~~~~~~~~~~l~~~dv~~~n~~E~ 178 (296)
.+|+++++|+++... .+.+.++. +..++ .++++.++..+-...+.....+..+++++|.+=+|++|+
T Consensus 210 ~~D~avlSG~q~l~d~y~dg~~~~e~l~~~~~~i~~l~~~~~~i~iH~E~As~~~~~i~~~v~~~Ilp~VDSlGmNEqEL 289 (453)
T PRK14039 210 EMDGALISGFHLLLETYPDGSTYREKLEDSLAQLKWWKSKNEKLRIHAELGHFASKEIANSVFLILAGIVDSIGMNEDEL 289 (453)
T ss_pred CCCEEEEechhhhhhhcCCcccHHHHHHHHHHHHHHHHhcCCCceEEEEecCcccHHHHHHHHHHhhcccccccCCHHHH
Confidence 789999999985311 23333333 33322 346888998765555667777888999999999999999
Q ss_pred HHHHHHcC
Q 022475 179 RTFAKVHG 186 (296)
Q Consensus 179 ~~l~~~~~ 186 (296)
..+....+
T Consensus 290 a~l~~~~g 297 (453)
T PRK14039 290 AMLANLHG 297 (453)
T ss_pred HHHHHHcc
Confidence 99887643
No 82
>TIGR02045 P_fruct_ADP ADP-specific phosphofructokinase. Phosphofructokinase is a key enzyme of glycolysis. The phosphate group donor for different subtypes of phosphofructokinase can be ATP, ADP, or pyrophosphate. This family consists of ADP-dependent phosphofructokinases. Members are more similar to ADP-dependent glucokinases (excluded from this family) than to other phosphofructokinases.
Probab=98.24 E-value=0.00026 Score=63.43 Aligned_cols=75 Identities=16% Similarity=0.068 Sum_probs=53.6
Q ss_pred hcceEEEEeccccccC-----------hHHHHHHHHHHhh-CCCEEEEeCCchhhhhhhhHHHHhhcCCCcEEEcCHHHH
Q 022475 111 EKAKYYYIAGFFLTVS-----------PESIQMVAEHAAA-KNKVFMMNLSAPFICEFFREPQEKALPYMDYVFGNETEA 178 (296)
Q Consensus 111 ~~~~~~~i~g~~~~~~-----------~~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~l~~~dv~~~n~~E~ 178 (296)
..+|.++++|++.... .+...+.++..++ .++++.++..+-.-.+.....+..+++++|-+-+|++|+
T Consensus 208 ~~~d~~vlSG~q~m~~~y~dg~~~~~~~er~~~~i~~L~~~~~i~iH~E~As~~~~~l~~~i~~~ilp~vDSlGMNE~EL 287 (446)
T TIGR02045 208 EPVDGAILSGYQGIKEEYSDGKTAKYYLERAKEDIELLKKNKDLKIHVEFASIQNREIRKKVVTNIFPHVDSVGMDEAEI 287 (446)
T ss_pred hcccEEEEEchhhhhhhccCCccHhHHHHHHHHHHHHHhhCCCCeEEEEecccccHHHHHHHHHhhccccccccCCHHHH
Confidence 5689999999984321 1233344444433 567888998765545556777778999999999999999
Q ss_pred HHHHHHc
Q 022475 179 RTFAKVH 185 (296)
Q Consensus 179 ~~l~~~~ 185 (296)
..+....
T Consensus 288 a~ll~~l 294 (446)
T TIGR02045 288 ANVLSVL 294 (446)
T ss_pred HHHHHHh
Confidence 9988654
No 83
>PF02110 HK: Hydroxyethylthiazole kinase family; InterPro: IPR000417 Thiamine pyrophosphate (TPP), a required cofactor for many enzymes in the cell, is synthesised de novo in Salmonella typhimurium []. Five kinase activities have been implicated in TPP synthesis, which involves joining a 4-methyl-5-(beta-hydroxyethyl)thiazole (THZ) moiety and a 4-amino-5- hydroxymethyl-2-methylpyrimidine (HMP) moiety [, ]. THZ kinase (2.7.1.50 from EC) activity is involved in the salvage synthesis of TH-P from the thiazole: 2-methyl-4-amino-5-hydroxymethylpyrimidine diphosphate + 4-4-methyl-5-(2-phosphonooxyethyl)-thiazole = pyrophosphate + thiamin monophosphate Hydroxyethylthiazole kinase expression is regulated at the mRNA level by intracellular thiamin pyrophosphate [].; GO: 0004417 hydroxyethylthiazole kinase activity, 0009228 thiamine biosynthetic process; PDB: 1EKK_A 1ESQ_C 1C3Q_B 1ESJ_A 1EKQ_B 3HPD_A 3DZV_A 3NL5_A 3NL2_A 3NM1_A ....
Probab=98.06 E-value=0.00023 Score=59.01 Aligned_cols=162 Identities=14% Similarity=0.077 Sum_probs=101.1
Q ss_pred hhhhhhcceEEEEeccccccCh---HHHHHHHHHHhhCCCEEEEeCCchhhhhhhhHHHHhhc--CCCcEEEcCHHHHHH
Q 022475 106 IWSIVEKAKYYYIAGFFLTVSP---ESIQMVAEHAAAKNKVFMMNLSAPFICEFFREPQEKAL--PYMDYVFGNETEART 180 (296)
Q Consensus 106 ~~~~~~~~~~~~i~g~~~~~~~---~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l--~~~dv~~~n~~E~~~ 180 (296)
..+..+.++.++++=- ..++ +.+....+.+.+.++|+++||-.-.....-.+..++++ .+.++|+.|..|...
T Consensus 43 ~~e~~~~a~al~iNiG--Tl~~~~~~~m~~A~~~A~~~~~PvVLDPVgvGas~~R~~~~~~LL~~~~~~vIrGN~sEI~a 120 (246)
T PF02110_consen 43 VEEFASIADALVINIG--TLTDERIEAMKKAAKAANELGIPVVLDPVGVGASKFRTEFALELLNNYKPTVIRGNASEIAA 120 (246)
T ss_dssp HHHHHHCTSEEEEEST--TSSHHHHHHHHHHHHHHHHTT--EEEE-TTBTTBHHHHHHHHHHHCHS--SEEEEEHHHHHH
T ss_pred HHHHHHHcCEEEEECC--CCCHhHHHHHHHHHHHHHHcCCCEEEeCcccCCcHHHHHHHHHHHHhCCCcEEEeCHHHHHH
Confidence 4455677888999732 2234 46667778889999999999955443334455566777 368999999999999
Q ss_pred HHHHcC----CC----CCCHHHHHHHHhcCCCCCCCCceEEEEeeCCCcEEEEECCeEEEEecccCCCccccCCCCCchh
Q 022475 181 FAKVHG----WE----TDNVEEIALKISQWPKASGTHKRITVITQGADPVVVAEDGKVKLFPVILLPKEKLVDTNGAGDA 252 (296)
Q Consensus 181 l~~~~~----~~----~~~~~~~~~~l~~~~~~~~~g~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~~~vvd~tGaGDa 252 (296)
|.+... .+ ..+..+.++.+. .+.++ +|+-.|+...+. ++.+.+.++.-.. -.-.-||.|+.
T Consensus 121 Lag~~~~~kGVDs~~~~~~~~~~a~~lA-----~k~~~--vVvvTG~~D~Is-dg~~~~~i~nG~~---~l~~itGtGC~ 189 (246)
T PF02110_consen 121 LAGEDSKAKGVDSGDSDEDAIEAAKQLA-----QKYNC--VVVVTGEVDYIS-DGNRVYRIPNGSP---LLSKITGTGCM 189 (246)
T ss_dssp HHTCCCCSCSSSSSCGSHHHHHHHHHHH-----HHTTS--EEEEESSSEEEE-ESSCEEEECSSSG---GGGGSTTHHHH
T ss_pred HhCcCCCCCCcCcCCcchHHHHHHHHHH-----HhcCC--EEEEecCCcEEE-CCCeEEEeCCCCh---HhcceeccchH
Confidence 987532 11 112345666665 23333 444457777664 6666666643221 45566999999
Q ss_pred hhHHHHHHHhcCCCHHHHHHHhhHHhhh
Q 022475 253 FVGGFLSQLVQEKPVEDCVRTGCYAANV 280 (296)
Q Consensus 253 f~ag~~~~l~~~~~~~~a~~~A~~~aa~ 280 (296)
..+-+.+.+.-..+..++...|...-..
T Consensus 190 lgaliaaf~av~~d~~~aa~~a~~~~~~ 217 (246)
T PF02110_consen 190 LGALIAAFLAVAEDPLEAAVAAVALYGI 217 (246)
T ss_dssp HHHHHHHHHCCCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccchHHHHHHHHHHHH
Confidence 8888888887766666666555544333
No 84
>PF01256 Carb_kinase: Carbohydrate kinase; InterPro: IPR000631 This family is related to Hydroxyethylthiazole kinase IPR000417 from INTERPRO and PfkB carbohydrate kinase IPR011611 from INTERPRO implying that it also a carbohydrate kinase. Several uncharacterised proteins have been shown to share regions of similarities, including yeast chromosome XI hypothetical protein YKL151c; Caenorhabditis elegans hypothetical protein R107.2; Escherichia coli hypothetical protein yjeF; Bacillus subtilis hypothetical protein yxkO; Helicobacter pylori hypothetical protein HP1363; Mycobacterium tuberculosis hypothetical protein MtCY77.05c; Mycobacterium leprae hypothetical protein B229_C2_201; Synechocystis sp. (strain PCC 6803) hypothetical protein sll1433; and Methanocaldococcus jannaschii (Methanococcus jannaschii) hypothetical protein MJ1586. These are proteins of about 30 to 40 kDa whose central region is well conserved.; PDB: 3RSG_A 3RT9_A 3RRF_A 3RTB_A 3RRE_A 3RS9_A 3RSS_A 3RRB_A 3RTA_A 3RTD_A ....
Probab=98.00 E-value=0.00014 Score=60.65 Aligned_cols=159 Identities=16% Similarity=0.099 Sum_probs=99.9
Q ss_pred hhhhcceEEEEeccccccChHHHHHHHHHHhhCCCEEEEeCCchhhhhhhhHHHHhhcCCCcEEEcCHHHHHHHHHHcCC
Q 022475 108 SIVEKAKYYYIAGFFLTVSPESIQMVAEHAAAKNKVFMMNLSAPFICEFFREPQEKALPYMDYVFGNETEARTFAKVHGW 187 (296)
Q Consensus 108 ~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~dv~~~n~~E~~~l~~~~~~ 187 (296)
+.+++.|.+++.+ .+...+ ....+++...+...++++|-..-....... ...+.--|++|+..|+..|++....
T Consensus 63 ~~~~~~~av~iGP-Glg~~~-~~~~~~~~~~~~~~p~VlDADaL~~l~~~~----~~~~~~~IlTPH~gE~~rL~~~~~~ 136 (242)
T PF01256_consen 63 ELLEKADAVVIGP-GLGRDE-ETEELLEELLESDKPLVLDADALNLLAENP----KKRNAPVILTPHPGEFARLLGKSVE 136 (242)
T ss_dssp HHHCH-SEEEE-T-T-SSSH-HHHHHHHHHHHHCSTEEEECHHHHCHHHCC----CCSSSCEEEE-BHHHHHHHHTTTCH
T ss_pred hhhccCCEEEeec-CCCCch-hhHHHHHHHHhhcceEEEehHHHHHHHhcc----ccCCCCEEECCCHHHHHHHhCCccc
Confidence 4567899999975 223333 334456656666778999974432111111 2234456667999999999976542
Q ss_pred CCCCHHHHHHHHhcCCCCCCCCceEEEEeeCCCcEEEEECCeEEEEecccCCCccccCCCCCchhhhHHHHHHHhcCCCH
Q 022475 188 ETDNVEEIALKISQWPKASGTHKRITVITQGADPVVVAEDGKVKLFPVILLPKEKLVDTNGAGDAFVGGFLSQLVQEKPV 267 (296)
Q Consensus 188 ~~~~~~~~~~~l~~~~~~~~~g~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~~~vvd~tGaGDaf~ag~~~~l~~~~~~ 267 (296)
..++..+.++.+.+ +.++ .+|+ -|..-.+...+++.+..+.-. .-.-+-|.||.+++-+..-+.++.++
T Consensus 137 ~~~~~~~~a~~~a~-----~~~~-~vvL-KG~~t~I~~p~~~~~~n~~gn----~~la~gGsGDvLaGii~~llaq~~~~ 205 (242)
T PF01256_consen 137 IQEDRIEAAREFAK-----EYGA-VVVL-KGAVTIIASPGGRVYVNPTGN----PGLATGGSGDVLAGIIAGLLAQGYDP 205 (242)
T ss_dssp HCCSHHHHHHHHHH-----HHTS-EEEE-ESTSSEEEEETSEEEEE--------GGGSSTTHHHHHHHHHHHHHHHTSSH
T ss_pred chhhHHHHHHHHHh-----hcCc-EEEE-eCCCcEEEecCcceeEeCCCC----CCCCCCCcccHHHHHHHHHHHccCCH
Confidence 34567777776652 2332 3444 566666665577777765432 45778899999999999999999999
Q ss_pred HHHHHHhhHHhhhhhh
Q 022475 268 EDCVRTGCYAANVVIQ 283 (296)
Q Consensus 268 ~~a~~~A~~~aa~~~~ 283 (296)
.+|+..|...=+.+-.
T Consensus 206 ~~Aa~~av~lHg~Ag~ 221 (242)
T PF01256_consen 206 FEAACLAVYLHGRAGD 221 (242)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999988776555444
No 85
>PF04587 ADP_PFK_GK: ADP-specific Phosphofructokinase/Glucokinase conserved region; InterPro: IPR007666 Although ATP is the most common phosphoryl group donor for kinases, certain hyperthermophilic archaea, such as Thermococcus litoralis and Pyrococcus furiosus, utilise unusual ADP-dependent glucokinases (ADPGKs) and phosphofructokinases (ADPPKKs) in their glycolytic pathways [, , ]. ADPGKs and ADPPFKs exhibit significant similarity, and form an ADP-dependent kinase (ADPK) family, which was tentatively named the PFKC family []. A ~460-residue ADPK domain is also found in a bifunctional ADP-dependent gluco/phosphofructo- kinase (ADP-GK/PFK) from Methanocaldococcus jannaschii (Methanococcus jannaschii) as well as in homologous hypothetical proteins present in several eukaryotes []. The whole structure of the ADPK domain can be divided into large and small alpha/beta subdomains. The larger subdomain, which carries the ADP binding site, consists of a twisted 12-stranded beta sheet flanked on both faces by 13 alpha helices and three 3(10) helices, forming an alpha/beta 3-layer sandwich. The smaller subdomain, which covers the active site, forms an alpha/beta two-layer structure containing 5 beta strands and four alpha helices. The ADP molecule is buried in a shallow pocket in the large subdomain. The binding of substrate sugar induces a structural change, the small domain closing to form a complete substrate sugar binding site [, , ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 1GC5_A 1L2L_A 3DRW_B 1U2X_A 1UA4_A.
Probab=97.96 E-value=0.00019 Score=65.22 Aligned_cols=75 Identities=20% Similarity=0.129 Sum_probs=47.9
Q ss_pred hcceEEEEeccccccC----h----H---HHHHHHHHHh-hCCCEEEEeCCchhhhhhhhHHHHhhcCCCcEEEcCHHHH
Q 022475 111 EKAKYYYIAGFFLTVS----P----E---SIQMVAEHAA-AKNKVFMMNLSAPFICEFFREPQEKALPYMDYVFGNETEA 178 (296)
Q Consensus 111 ~~~~~~~i~g~~~~~~----~----~---~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~dv~~~n~~E~ 178 (296)
.++|+++++|+++... . + .+.+.++..+ ..++++-++.....-.......++.+++++|.+=+|++|+
T Consensus 208 ~~~d~~vlSGlq~l~~~~~d~~~~~~~l~~~~~~i~~l~~~~~~~iH~E~As~~d~~l~~~i~~~ilp~vDSlGmNEqEL 287 (444)
T PF04587_consen 208 FKPDLAVLSGLQMLDEFYFDGETYEERLKRLKEQIKLLKSNPDIPIHLELASFADEELRKEILEKILPHVDSLGMNEQEL 287 (444)
T ss_dssp TT-SEEEEE-GGG--TB-TTSTCHHHHHHHHHHHHHHHH-HTT-EEEEE----SSHHHHHHHHHHHGGGSSEEEEEHHHH
T ss_pred cCCCEEEEeccccchhhccchhHHHHHHHHHHHHHHhccCCCCCceEEEeccccCHHHHHHHHHHhhccccccccCHHHH
Confidence 3499999999985331 1 2 2233334455 5778999998665444556777779999999999999999
Q ss_pred HHHHHHc
Q 022475 179 RTFAKVH 185 (296)
Q Consensus 179 ~~l~~~~ 185 (296)
..++...
T Consensus 288 ~~l~~~l 294 (444)
T PF04587_consen 288 ANLLSVL 294 (444)
T ss_dssp HHHHHHT
T ss_pred HHHHHHh
Confidence 9887644
No 86
>PRK10565 putative carbohydrate kinase; Provisional
Probab=97.94 E-value=0.00032 Score=65.02 Aligned_cols=155 Identities=17% Similarity=0.104 Sum_probs=92.3
Q ss_pred hhhhcceEEEEeccccccChHHHHHHHHHHhhCCCEEEEeCCchhhhhhhhHHHHhhcCCCcEEEcCHHHHHHHHHHcCC
Q 022475 108 SIVEKAKYYYIAGFFLTVSPESIQMVAEHAAAKNKVFMMNLSAPFICEFFREPQEKALPYMDYVFGNETEARTFAKVHGW 187 (296)
Q Consensus 108 ~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~dv~~~n~~E~~~l~~~~~~ 187 (296)
+.+..+|.++++.- +.. .+....+++.+++.++++++|.....+.....+ .....+++||..|+..|++....
T Consensus 316 ~~~~~~~a~viGpG-lg~-~~~~~~~~~~~~~~~~P~VLDAdaL~ll~~~~~-----~~~~~VLTPh~gE~~rL~~~~~~ 388 (508)
T PRK10565 316 ESLEWADVVVIGPG-LGQ-QEWGKKALQKVENFRKPMLWDADALNLLAINPD-----KRHNRVITPHPGEAARLLGCSVA 388 (508)
T ss_pred HHhhcCCEEEEeCC-CCC-CHHHHHHHHHHHhcCCCEEEEchHHHHHhhCcc-----ccCCeEECCCHHHHHHHhCCChh
Confidence 34567888888642 222 233355557777778899999865332111110 11246888999999999863211
Q ss_pred CC-CCHHHHHHHHhcCCCCCCCCceEEEEeeCCCcEEEEEC-CeEEEEecccCCCccccCCCCCchhhhHHHHHHHhcCC
Q 022475 188 ET-DNVEEIALKISQWPKASGTHKRITVITQGADPVVVAED-GKVKLFPVILLPKEKLVDTNGAGDAFVGGFLSQLVQEK 265 (296)
Q Consensus 188 ~~-~~~~~~~~~l~~~~~~~~~g~~~vvvt~G~~G~~~~~~-~~~~~~~~~~~~~~~vvd~tGaGDaf~ag~~~~l~~~~ 265 (296)
.. .+..+.++.+. .+.+ ..+|+| |..- ++.+. ++.+..+.- . .-.-++|.||+++|.+.+.++++.
T Consensus 389 ~v~~~~~~~a~~~a-----~~~~-~~vvlK-G~~~-iI~~~~~~~~~~~~G-~---~~ma~~GsGDvLaGiIaalla~g~ 456 (508)
T PRK10565 389 EIESDRLLSARRLV-----KRYG-GVVVLK-GAGT-VIAAEPDALAIIDVG-N---AGMASGGMGDVLSGIIGALLGQKL 456 (508)
T ss_pred hhhhhHHHHHHHHH-----HHhC-CEEEEe-CCCc-EEEcCCceEEEECCC-C---CCCCCCChHHHHHHHHHHHHHcCC
Confidence 11 13444555553 2222 345553 4443 44443 444444322 1 345669999999999999999999
Q ss_pred CHHHHHHHhhHHhhhh
Q 022475 266 PVEDCVRTGCYAANVV 281 (296)
Q Consensus 266 ~~~~a~~~A~~~aa~~ 281 (296)
++.+|+..|+..=+.+
T Consensus 457 ~~~~Aa~~a~~lhg~A 472 (508)
T PRK10565 457 SPYDAACAGCVAHGAA 472 (508)
T ss_pred CHHHHHHHHHHHHHHH
Confidence 9999888887543333
No 87
>PRK14038 ADP-dependent glucokinase; Provisional
Probab=97.93 E-value=0.0016 Score=58.44 Aligned_cols=77 Identities=19% Similarity=0.074 Sum_probs=51.0
Q ss_pred hhhhcceEEEEeccccccC---hHHH---HHHHHHHhhCCCEEEEeCCchhhhhhhhHHHHhhcCCCcEEEcCHHHHHHH
Q 022475 108 SIVEKAKYYYIAGFFLTVS---PESI---QMVAEHAAAKNKVFMMNLSAPFICEFFREPQEKALPYMDYVFGNETEARTF 181 (296)
Q Consensus 108 ~~~~~~~~~~i~g~~~~~~---~~~~---~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~dv~~~n~~E~~~l 181 (296)
++...+|+++++|++.... .+.+ .+.++..+..++++-+++..... ....+.+.++++++|-+-+|++|+..+
T Consensus 220 ei~~~~Dl~vlSG~q~l~~~~~~~~l~~~~~~l~~l~~~~i~iH~EfAs~~d-~~~r~~i~~ilp~vDSlGmNE~ELa~l 298 (453)
T PRK14038 220 EIAKKAELAIISGLQALTEENYREPFETVREHLKVLNERGIPAHLEFAFTPD-ETVREEILGLLGKFYSVGLNEVELASI 298 (453)
T ss_pred hhccCCCEEEEEchhhhccccHHHHHHHHHHHHHhcCcCCceEEEEeeccch-HHHHHHHHhhCccccccccCHHHHHHH
Confidence 3446799999999984321 1222 33334444457888888864322 223444446899999999999999988
Q ss_pred HHHc
Q 022475 182 AKVH 185 (296)
Q Consensus 182 ~~~~ 185 (296)
....
T Consensus 299 l~~l 302 (453)
T PRK14038 299 MEVM 302 (453)
T ss_pred HHHh
Confidence 8744
No 88
>COG2145 ThiM Hydroxyethylthiazole kinase, sugar kinase family [Coenzyme metabolism]
Probab=97.87 E-value=0.0012 Score=54.40 Aligned_cols=159 Identities=17% Similarity=0.127 Sum_probs=100.9
Q ss_pred hhhhcceEEEEeccccc-cChHHHHHHHHHHhhCCCEEEEeCCchhhhhhhhHHHHhhcCC--CcEEEcCHHHHHHHHHH
Q 022475 108 SIVEKAKYYYIAGFFLT-VSPESIQMVAEHAAAKNKVFMMNLSAPFICEFFREPQEKALPY--MDYVFGNETEARTFAKV 184 (296)
Q Consensus 108 ~~~~~~~~~~i~g~~~~-~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~--~dv~~~n~~E~~~l~~~ 184 (296)
+..+-++.++|+--++. ..-+.+....+.+.+.+.|+++||-.-.....-.+....++.+ .++|..|..|...|.+.
T Consensus 51 e~~kia~AL~INIGTL~~~~~~~m~~A~~~An~~~~PvvLDPVgvgAt~~R~~~~~~LL~~~~~~~IrGN~sEI~~Lag~ 130 (265)
T COG2145 51 EFAKIADALLINIGTLSAERIQAMRAAIKAANESGKPVVLDPVGVGATKFRTKFALELLAEVKPAAIRGNASEIAALAGE 130 (265)
T ss_pred HHHHhccceEEeeccCChHHHHHHHHHHHHHHhcCCCEEecCccCCchHHHHHHHHHHHHhcCCcEEeccHHHHHHHhcc
Confidence 44455777887632221 1124666778889999999999995543333344555666654 69999999999999864
Q ss_pred c----CCC----CCCHHHHHHHHhcCCCCCCCCceEEEEeeCCCcEEEEECCeEEEEecccCCCccccCCCCCchhhhHH
Q 022475 185 H----GWE----TDNVEEIALKISQWPKASGTHKRITVITQGADPVVVAEDGKVKLFPVILLPKEKLVDTNGAGDAFVGG 256 (296)
Q Consensus 185 ~----~~~----~~~~~~~~~~l~~~~~~~~~g~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~~~vvd~tGaGDaf~ag 256 (296)
. +.+ ..++.++++.+. .+.+ .+++-.|+...+. ++++.+.+.--. | -.-.-||+|+...|.
T Consensus 131 ~~~~kGVDa~~~~~~~~~~a~~~A-----~~~~--~vvvvTG~vD~Is-dg~~~~~i~nG~-p--ll~~ItGtGCllgav 199 (265)
T COG2145 131 AGGGKGVDAGDGAADAIEAAKKAA-----QKYG--TVVVVTGEVDYIS-DGTRVVVIHNGS-P--LLGKITGTGCLLGAV 199 (265)
T ss_pred cccccccccccchhhHHHHHHHHH-----HHhC--cEEEEECCeeEEE-cCCeEEEEECCC-c--HHhhhhccccHHHHH
Confidence 3 222 345556666654 2333 3444457766554 555665554322 1 355669999998888
Q ss_pred HHHHHhcCCC-HHHHHHHhhHH
Q 022475 257 FLSQLVQEKP-VEDCVRTGCYA 277 (296)
Q Consensus 257 ~~~~l~~~~~-~~~a~~~A~~~ 277 (296)
..+.+....+ .-+|+..|+.+
T Consensus 200 ~aaF~av~~d~~~~A~~~A~~~ 221 (265)
T COG2145 200 VAAFLAVEKDPLLDAAAEACAV 221 (265)
T ss_pred HHHHHhcCCCHHHHHHHHHHHH
Confidence 8888877777 46666655543
No 89
>KOG3974 consensus Predicted sugar kinase [Carbohydrate transport and metabolism]
Probab=97.82 E-value=0.0012 Score=54.19 Aligned_cols=166 Identities=16% Similarity=0.230 Sum_probs=104.1
Q ss_pred hhhhcceEEEEeccccccCh---HHHHHHHHHHhhCCCEEEEeCCchhhhhhhhHHHHhhcCCCc-EEEcCHHHHHHHHH
Q 022475 108 SIVEKAKYYYIAGFFLTVSP---ESIQMVAEHAAAKNKVFMMNLSAPFICEFFREPQEKALPYMD-YVFGNETEARTFAK 183 (296)
Q Consensus 108 ~~~~~~~~~~i~g~~~~~~~---~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~d-v~~~n~~E~~~l~~ 183 (296)
..+.+-..++|.+ .++.++ ..+..+++.++++++|+++|....+......+. .+-.+.. +++||..|+..|++
T Consensus 97 k~L~RlhavVIGP-GLGRdp~~~k~i~~iley~~~~dvP~VIDaDGL~Lv~q~~e~--l~~~~~~viLTPNvvEFkRLcd 173 (306)
T KOG3974|consen 97 KLLQRLHAVVIGP-GLGRDPAILKEIAKILEYLRGKDVPLVIDADGLWLVEQLPER--LIGGYPKVILTPNVVEFKRLCD 173 (306)
T ss_pred HHHhheeEEEECC-CCCCCHHHHHHHHHHHHHHhcCCCcEEEcCCceEehhhchhh--hhccCceeeeCCcHHHHHHHHH
Confidence 4577889999965 345555 356789999999999999998655433332221 1223444 45699999999997
Q ss_pred HcCCCCCCHHHHHHHHhcCCCCCCCCceEEEEeeCCCcEEEEECCeEEEEecccCCCccccCCCCCchhhhHHHHHHHh-
Q 022475 184 VHGWETDNVEEIALKISQWPKASGTHKRITVITQGADPVVVAEDGKVKLFPVILLPKEKLVDTNGAGDAFVGGFLSQLV- 262 (296)
Q Consensus 184 ~~~~~~~~~~~~~~~l~~~~~~~~~g~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~~~vvd~tGaGDaf~ag~~~~l~- 262 (296)
....+.++..++.....++ ....++--|....++..+++.+..+..- .....-|=||..++.+..-+.
T Consensus 174 ~~l~~~d~~~~~~~L~~~l-------~nv~vvqKG~~D~ils~~~ev~~~s~eG----s~kRcGGQGDiLaGsla~fl~w 242 (306)
T KOG3974|consen 174 AELDKVDSHSQMQHLAAEL-------MNVTVVQKGESDKILSPDSEVRVCSTEG----SLKRCGGQGDILAGSLATFLSW 242 (306)
T ss_pred HhhccccchHHHHHHHHHh-------cCeEEEEecCCceeeCCCCeeEEccCCC----CccccCCCcchhhhHHHHHHHH
Confidence 6333333333333333221 1345666777777665555555544322 456778889999988776553
Q ss_pred ---cCCCHHHHHHHhhHHhhhhhhhccC
Q 022475 263 ---QEKPVEDCVRTGCYAANVVIQRSGC 287 (296)
Q Consensus 263 ---~~~~~~~a~~~A~~~aa~~~~~~G~ 287 (296)
......++...|..++++.+++.|.
T Consensus 243 ~k~~~~e~~~~~~~a~~a~s~~vr~a~r 270 (306)
T KOG3974|consen 243 AKLLSGEQDSAAFLAAVAGSIMVRRAGR 270 (306)
T ss_pred HHhccCCccchhhhhhhhhHHHHHHHHH
Confidence 2233336777777777777776553
No 90
>cd01938 ADPGK_ADPPFK ADP-dependent glucokinase (ADPGK) and phosphofructokinase (ADPPFK). ADPGK and ADPPFK are proteins that rely on ADP rather than ATP to donate a phosphoryl group. They are found in certain hyperthermophilic archaea and in higher eukaryotes. A functional ADPGK has been characterized in mouse and is assumed to be desirable during ischemia/hypoxia. ADPGK and ADPPFK contain a large and a small domain with the binding site located in a groove between the domains. Partial domain closing is seen when ADP is bound, and further domain closing is observed when glucose is also bound. The oligomerization state apparently varies depending on the species, with some existing as monomers, some as dimers, and some as tetramers.
Probab=96.96 E-value=0.011 Score=53.53 Aligned_cols=73 Identities=16% Similarity=0.167 Sum_probs=50.9
Q ss_pred ceEEEEeccccccC----hHHHHHHHHHH----hh--CCCEEEEeCCchhhhhhhhHHHHhhcCCCcEEEcCHHHHHHHH
Q 022475 113 AKYYYIAGFFLTVS----PESIQMVAEHA----AA--KNKVFMMNLSAPFICEFFREPQEKALPYMDYVFGNETEARTFA 182 (296)
Q Consensus 113 ~~~~~i~g~~~~~~----~~~~~~~~~~~----~~--~~~~~~~d~~~~~~~~~~~~~~~~~l~~~dv~~~n~~E~~~l~ 182 (296)
+|+++++|+++.-. .....+.++.+ +. ..+++-+++.+-.-.+...+.+..+++++|-+=+|+.|+..+.
T Consensus 206 pDl~vlSGlqmm~~~~~~~~~~~~~l~~~~~~l~~l~~~i~iH~E~As~~d~~l~~~i~~~ilp~VDSlGmNEqEL~~l~ 285 (445)
T cd01938 206 PDLAVLSGLQMMEGQSFDEGTRKELLERVKSILEILPPLIPIHLELASTVDEELREEILHEVVPYVDSLGLNEQELANLL 285 (445)
T ss_pred CCEEEEechhhhcccCCChhhHHHHHHHHHHHHHhccccCcEEEEecccccHHHHHHHHHHhcccccccccCHHHHHHHH
Confidence 89999999985221 22333333222 22 2377888887655455567778889999999999999999988
Q ss_pred HHc
Q 022475 183 KVH 185 (296)
Q Consensus 183 ~~~ 185 (296)
...
T Consensus 286 ~~l 288 (445)
T cd01938 286 QVL 288 (445)
T ss_pred HHh
Confidence 754
No 91
>COG0063 Predicted sugar kinase [Carbohydrate transport and metabolism]
Probab=95.75 E-value=0.33 Score=41.47 Aligned_cols=149 Identities=20% Similarity=0.143 Sum_probs=76.7
Q ss_pred hhcceEEEEeccccccChHHHHHHHHHHhhCC-CEEEEeCCchhhhhhhhHHHHhhcCC-CcEEEcCHHHHHHHHHHcCC
Q 022475 110 VEKAKYYYIAGFFLTVSPESIQMVAEHAAAKN-KVFMMNLSAPFICEFFREPQEKALPY-MDYVFGNETEARTFAKVHGW 187 (296)
Q Consensus 110 ~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~-~~~~~d~~~~~~~~~~~~~~~~~l~~-~dv~~~n~~E~~~l~~~~~~ 187 (296)
.++.|.++++. .+....+ .+++++..-+.. +++++|...-..- ......... .-|++|+.-|++.|++....
T Consensus 99 ~~~~~avviGp-GlG~~~~-~~~~~~~~l~~~~~p~ViDADaL~~l----a~~~~~~~~~~~VlTPH~gEf~rL~g~~~~ 172 (284)
T COG0063 99 VERADAVVIGP-GLGRDAE-GQEALKELLSSDLKPLVLDADALNLL----AELPDLLDERKVVLTPHPGEFARLLGTEVD 172 (284)
T ss_pred hccCCEEEECC-CCCCCHH-HHHHHHHHHhccCCCEEEeCcHHHHH----HhCcccccCCcEEECCCHHHHHHhcCCccc
Confidence 46789999973 2333332 233333333333 7888887532210 001112222 25566999999999874322
Q ss_pred C-CCCHHHHHHHHhcCCCCCCCCceEEEEeeCCCcEEEEECCeEEEEecccCCCccccCCCCCchhhhHHHHHHHhcCC-
Q 022475 188 E-TDNVEEIALKISQWPKASGTHKRITVITQGADPVVVAEDGKVKLFPVILLPKEKLVDTNGAGDAFVGGFLSQLVQEK- 265 (296)
Q Consensus 188 ~-~~~~~~~~~~l~~~~~~~~~g~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~~~vvd~tGaGDaf~ag~~~~l~~~~- 265 (296)
+ ..+..+.++.+. .+.+ ..||+ -|..-.+...+++.+..+.-. .-.-+-|.||+.++-+..-|+++.
T Consensus 173 ~~~~~r~~~a~~~a-----~~~~-~vvVL-KG~~tvI~~~~g~~~~n~~G~----~~ma~GGtGDvLaGii~alLAq~~~ 241 (284)
T COG0063 173 EIEVDRLEAARELA-----AKYG-AVVVL-KGAVTVIADPDGEVFVNPTGN----PGMATGGTGDVLAGIIGALLAQGPA 241 (284)
T ss_pred ccccchHHHHHHHH-----HHcC-CEEEE-eCCCCEEEcCCCcEEEcCCCC----HHhccCcchHHHHHHHHHHHhCCCC
Confidence 2 234445555553 2333 33444 455555543333444433211 234456889998877766667761
Q ss_pred CHHHHHHHhh
Q 022475 266 PVEDCVRTGC 275 (296)
Q Consensus 266 ~~~~a~~~A~ 275 (296)
++.+|+..|+
T Consensus 242 ~~~~Aa~~g~ 251 (284)
T COG0063 242 DPLEAAAAGA 251 (284)
T ss_pred CHHHHHHHHH
Confidence 3445444443
No 92
>KOG4184 consensus Predicted sugar kinase [Carbohydrate transport and metabolism; General function prediction only]
Probab=92.84 E-value=1 Score=39.18 Aligned_cols=173 Identities=16% Similarity=0.188 Sum_probs=90.9
Q ss_pred hHhhhcCCCceeecCChhHHHHHHHHHhhcCCCcEEEEEeecCCchhHHHHHHHHhcCCceeEEecCCCCceeEEEEEeC
Q 022475 2 YDELASKENVEYIAGGATQNSIKVAQWMLQIPGATSYIGCIGKDKFGEEMKKNSTAAGVNVKYYEDESAPTGTCAVCVVG 81 (296)
Q Consensus 2 ~~~~~~~~~~~~~~GG~~~n~a~~~~~l~~lg~~v~~~~~vG~D~~g~~i~~~l~~~gi~~~~~~~~~~~t~~~~~~~~~ 81 (296)
|-+.....++..+.||.+.-.|. |++. ...+.++|..|.......+-.. +.+..-++++.... -+..+..
T Consensus 129 ~Ak~~~~~R~~~~mGGNA~LMA~---R~~~-~~~~~LlG~~~~R~~~~L~P~~-----~R~~~~~I~~DdiH-lILEYK~ 198 (478)
T KOG4184|consen 129 YAKVMDKERINWYMGGNAPLMAV---RFFM-EGAQVLLGAHMSRKLRPLLPKE-----IRLAGDEIPNDDIH-LILEYKA 198 (478)
T ss_pred hhhhhhhhhhhhhccCCchHHHH---HHHh-ccceeeecccccchhccccchh-----hhcccCcCcCCceE-EEEEecc
Confidence 33445556778899997766554 3332 3589999998875333222222 22222222322222 1223333
Q ss_pred Ceec-eeeccccccccCcc-ccCC-----hhhhhhhh--cceEEEEecccc-cc-ChHH----HHHHHHHHhh--CCCEE
Q 022475 82 GERS-LVANLSAANCYKSE-HLKR-----PEIWSIVE--KAKYYYIAGFFL-TV-SPES----IQMVAEHAAA--KNKVF 144 (296)
Q Consensus 82 ~~~~-~~~~~~~~~~~~~~-~~~~-----~~~~~~~~--~~~~~~i~g~~~-~~-~~~~----~~~~~~~~~~--~~~~~ 144 (296)
|+.. -.+.+.++..+... .... ..+.+.++ ..|+++++|-++ .. +.+. ++++-+...+ .|+++
T Consensus 199 Gd~~G~~VAP~anR~I~~~D~~n~~m~~~E~f~~Al~~fqPdLvVvsGlhmme~qske~r~~rl~~V~r~L~~iP~gip~ 278 (478)
T KOG4184|consen 199 GDKWGPYVAPRANRYILHNDRNNPHMRAVEQFTDALKMFQPDLVVVSGLHMMEMQSKEEREARLQQVVRSLSDIPTGIPV 278 (478)
T ss_pred CCcccccccccccceeeecCCCChHHHHHHHHHHHHHHhCCCEEEEechhHHhhhhHHHHHHHHHHHHHHHhcCCCCCch
Confidence 3321 11222222222111 1111 11222332 579999999774 22 2232 2333333332 46778
Q ss_pred EEeCCchhhhhhhhHHHHhhcCCCcEEEcCHHHHHHHHHH
Q 022475 145 MMNLSAPFICEFFREPQEKALPYMDYVFGNETEARTFAKV 184 (296)
Q Consensus 145 ~~d~~~~~~~~~~~~~~~~~l~~~dv~~~n~~E~~~l~~~ 184 (296)
-++..+........+.+-..+|++|=+=+|+.|+..|...
T Consensus 279 HlElaS~~~~~l~~~i~h~VlPyVdSLGlNEQEL~fL~q~ 318 (478)
T KOG4184|consen 279 HLELASMTNRELMSSIVHQVLPYVDSLGLNEQELLFLTQS 318 (478)
T ss_pred hhhHhHHHHHHHHHHHHHHhhhhccccCCCHHHHHHHHHH
Confidence 8887654433445666778899999999999999888754
No 93
>COG4809 Archaeal ADP-dependent phosphofructokinase/glucokinase [Carbohydrate transport and metabolism]
Probab=92.17 E-value=8.1 Score=34.33 Aligned_cols=79 Identities=16% Similarity=0.057 Sum_probs=55.0
Q ss_pred hhhhcceEEEEeccccc---cCh--------HHHHHHHHHHhh-CCCEEEEeCCchhhhhhhhHHHHhhcCCCcEEEcCH
Q 022475 108 SIVEKAKYYYIAGFFLT---VSP--------ESIQMVAEHAAA-KNKVFMMNLSAPFICEFFREPQEKALPYMDYVFGNE 175 (296)
Q Consensus 108 ~~~~~~~~~~i~g~~~~---~~~--------~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~l~~~dv~~~n~ 175 (296)
++..+.|..++||++.- .++ +...+-++..++ .++++-+++..-.....-.+.+.++++.++=+=+|+
T Consensus 221 ~i~~~vDgaiiSGyq~l~eey~dg~t~~~yle~s~e~i~~lk~~~~irvHlEfas~~d~~irk~i~~~il~~v~SvGldE 300 (466)
T COG4809 221 EIAKEVDGAIISGYQGLKEEYSDGSTYKYYLERSREDIKALKDRENIRVHLEFASIQDRKIRKEILTNILSIVYSVGLDE 300 (466)
T ss_pred HHhhhcceeeeechhhhhhhcCCCCcHHHHHHHHHHHHHHHhccccceEEEEecccccHHHHHHHHHHHHhhhhhcCCCH
Confidence 34567999999999842 111 223344455555 678888888655444456677778999999999999
Q ss_pred HHHHHHHHHcC
Q 022475 176 TEARTFAKVHG 186 (296)
Q Consensus 176 ~E~~~l~~~~~ 186 (296)
.|+..+....+
T Consensus 301 ~ElA~vl~vlG 311 (466)
T COG4809 301 VELANVLNVLG 311 (466)
T ss_pred HHHHHHHHhhC
Confidence 99998876543
No 94
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=88.28 E-value=2.7 Score=34.37 Aligned_cols=68 Identities=12% Similarity=-0.038 Sum_probs=49.4
Q ss_pred cceEEEEeccccccChHHHHHHHHHHhhCCCEEEEeCCchhhhhhhhHHHHhhcCCCcEEEc-----CHHHHHHHHH
Q 022475 112 KAKYYYIAGFFLTVSPESIQMVAEHAAAKNKVFMMNLSAPFICEFFREPQEKALPYMDYVFG-----NETEARTFAK 183 (296)
Q Consensus 112 ~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~dv~~~-----n~~E~~~l~~ 183 (296)
....|.+||--+.+.++.+.++++.+++.|+.+.+|..... ..+.++.++++.|.+.+ +.+..+.+++
T Consensus 38 sggGVt~SGGEPllq~~fl~~l~~~~k~~gi~~~leTnG~~----~~~~~~~l~~~~D~~l~DiK~~d~~~~~~~tG 110 (213)
T PRK10076 38 SGGGVTLSGGEVLMQAEFATRFLQRLRLWGVSCAIETAGDA----PASKLLPLAKLCDEVLFDLKIMDATQARDVVK 110 (213)
T ss_pred CCCEEEEeCchHHcCHHHHHHHHHHHHHcCCCEEEECCCCC----CHHHHHHHHHhcCEEEEeeccCCHHHHHHHHC
Confidence 34688888855667788999999999999999999986643 23456677788877754 4555556664
No 95
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=80.77 E-value=15 Score=28.64 Aligned_cols=123 Identities=13% Similarity=0.122 Sum_probs=66.8
Q ss_pred chhHHHHHHHHhcCCceeEE-----ecCCCCceeEEEEEeCCeeceeecccccc-c-----cCccccC---Chhhhhhhh
Q 022475 46 KFGEEMKKNSTAAGVNVKYY-----EDESAPTGTCAVCVVGGERSLVANLSAAN-C-----YKSEHLK---RPEIWSIVE 111 (296)
Q Consensus 46 ~~g~~i~~~l~~~gi~~~~~-----~~~~~~t~~~~~~~~~~~~~~~~~~~~~~-~-----~~~~~~~---~~~~~~~~~ 111 (296)
..-..+.+.|++.|.+.-.+ +..+..+|+.++-++.|++..+...+... . ...+.+. .+....++.
T Consensus 20 Tl~~ki~e~L~~~g~kvgGf~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGkY~V~v~~le~i~~~al~rA~~ 99 (179)
T COG1618 20 TLVLKIAEKLREKGYKVGGFITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRVGKYGVNVEGLEEIAIPALRRALE 99 (179)
T ss_pred HHHHHHHHHHHhcCceeeeEEeeeeecCCeEeeeEEEEccCCceEEEEEcCCCCcccceEEeeHHHHHHHhHHHHHHHhh
Confidence 46677888899887776554 22344556666555567776665443211 1 1112221 133444567
Q ss_pred cceEEEEecccc-ccChHHHHHHHHHHhhCCCEEEEeCCchhhhhhhhHHHHhhcCCCcEEE
Q 022475 112 KAKYYYIAGFFL-TVSPESIQMVAEHAAAKNKVFMMNLSAPFICEFFREPQEKALPYMDYVF 172 (296)
Q Consensus 112 ~~~~~~i~g~~~-~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~dv~~ 172 (296)
.+|+++|+=+.. .....-+...++..-+.+.+++.-+.... -.+.++.+-+.-.+..
T Consensus 100 ~aDvIIIDEIGpMElks~~f~~~ve~vl~~~kpliatlHrrs----r~P~v~~ik~~~~v~v 157 (179)
T COG1618 100 EADVIIIDEIGPMELKSKKFREAVEEVLKSGKPLIATLHRRS----RHPLVQRIKKLGGVYV 157 (179)
T ss_pred cCCEEEEecccchhhccHHHHHHHHHHhcCCCcEEEEEeccc----CChHHHHhhhcCCEEE
Confidence 789999996552 22234455666666667777665553221 1233555555544443
No 96
>KOG0053 consensus Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=79.60 E-value=29 Score=31.36 Aligned_cols=41 Identities=10% Similarity=0.092 Sum_probs=27.6
Q ss_pred hhhhc-ceEEEEeccc-cccChHHHHHHHHHHhhCCCEEEEeC
Q 022475 108 SIVEK-AKYYYIAGFF-LTVSPESIQMVAEHAAAKNKVFMMNL 148 (296)
Q Consensus 108 ~~~~~-~~~~~i~g~~-~~~~~~~~~~~~~~~~~~~~~~~~d~ 148 (296)
..+++ .++|++.... +...-.-+..+.+.|++.|+.+++|-
T Consensus 157 ~~i~~~t~~V~~ESPsNPll~v~DI~~l~~la~~~g~~vvVDn 199 (409)
T KOG0053|consen 157 KAIKENTKAVFLESPSNPLLKVPDIEKLARLAHKYGFLVVVDN 199 (409)
T ss_pred HhhccCceEEEEECCCCCccccccHHHHHHHHhhCCCEEEEeC
Confidence 34444 8899998643 11122346778889999999988884
No 97
>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=76.10 E-value=35 Score=30.86 Aligned_cols=109 Identities=17% Similarity=0.138 Sum_probs=61.3
Q ss_pred hhcCCCceeecCChhHHHHHHHHHhhcCCCcEEEEEe-ecCCchhHHHHHHHHhcCCceeEEecCCCCceeEEEEEeCCe
Q 022475 5 LASKENVEYIAGGATQNSIKVAQWMLQIPGATSYIGC-IGKDKFGEEMKKNSTAAGVNVKYYEDESAPTGTCAVCVVGGE 83 (296)
Q Consensus 5 ~~~~~~~~~~~GG~~~n~a~~~~~l~~lg~~v~~~~~-vG~D~~g~~i~~~l~~~gi~~~~~~~~~~~t~~~~~~~~~~~ 83 (296)
+.........+.|.+.-.+..+. +++.|..+..... .|. --..+...+++.||++.++-...
T Consensus 75 LEg~~~~~afsSGmaAI~~~~l~-ll~~GD~vl~~~~~YG~--t~~~~~~~l~~~gi~~~~~d~~~-------------- 137 (396)
T COG0626 75 LEGGEDAFAFSSGMAAISTALLA-LLKAGDHVLLPDDLYGG--TYRLFEKILQKFGVEVTFVDPGD-------------- 137 (396)
T ss_pred hhCCCcEEEecCcHHHHHHHHHH-hcCCCCEEEecCCccch--HHHHHHHHHHhcCeEEEEECCCC--------------
Confidence 33445566778888888887777 5666666655533 221 23455667788888887652111
Q ss_pred eceeeccccccccCccccCChhhhhhh-hcceEEEEeccc-cccChHHHHHHHHHHhhCCCEEEEeC
Q 022475 84 RSLVANLSAANCYKSEHLKRPEIWSIV-EKAKYYYIAGFF-LTVSPESIQMVAEHAAAKNKVFMMNL 148 (296)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~g~~-~~~~~~~~~~~~~~~~~~~~~~~~d~ 148 (296)
.+.+. ..+. .+.++|++..-+ +.+.-.-+..+.+.+++.|..+++|-
T Consensus 138 --------------~~~~~----~~~~~~~tk~v~lEtPsNP~l~v~DI~~i~~~A~~~g~~vvVDN 186 (396)
T COG0626 138 --------------DEALE----AAIKEPNTKLVFLETPSNPLLEVPDIPAIARLAKAYGALVVVDN 186 (396)
T ss_pred --------------hHHHH----HHhcccCceEEEEeCCCCcccccccHHHHHHHHHhcCCEEEEEC
Confidence 00000 0112 257777776532 11111235667778888887777763
No 98
>COG1180 PflA Pyruvate-formate lyase-activating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=75.20 E-value=29 Score=29.40 Aligned_cols=81 Identities=16% Similarity=0.094 Sum_probs=53.7
Q ss_pred cceEEEEeccccccChHHHHHHHHHHhhCCCEEEEeCCchhhhhhhhHHHHhhcCCCcEEEc-----CHHHHHHHHHHcC
Q 022475 112 KAKYYYIAGFFLTVSPESIQMVAEHAAAKNKVFMMNLSAPFICEFFREPQEKALPYMDYVFG-----NETEARTFAKVHG 186 (296)
Q Consensus 112 ~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~dv~~~-----n~~E~~~l~~~~~ 186 (296)
..+.|.++|--+.+..+.+.++++.+++.|+++.+|..... ..+..+.+++..|.+.+ +.+-.+.+++.
T Consensus 83 ~~~gvt~SGGEP~~q~e~~~~~~~~ake~Gl~~~l~TnG~~----~~~~~~~l~~~~D~v~~DlK~~~~~~y~~~tg~-- 156 (260)
T COG1180 83 SGGGVTFSGGEPTLQAEFALDLLRAAKERGLHVALDTNGFL----PPEALEELLPLLDAVLLDLKAFDDELYRKLTGA-- 156 (260)
T ss_pred CCCEEEEECCcchhhHHHHHHHHHHHHHCCCcEEEEcCCCC----CHHHHHHHHhhcCeEEEeeccCChHHHHHHhCC--
Confidence 57889998855666779999999999999999999986544 23334566777777653 33335555532
Q ss_pred CCCCCHHHHHHHH
Q 022475 187 WETDNVEEIALKI 199 (296)
Q Consensus 187 ~~~~~~~~~~~~l 199 (296)
+.+...+.++.+
T Consensus 157 -~~~~vl~~~~~l 168 (260)
T COG1180 157 -DNEPVLENLELL 168 (260)
T ss_pred -CcHHHHHHHHHH
Confidence 223334445555
No 99
>COG1922 WecG Teichoic acid biosynthesis proteins [Cell envelope biogenesis, outer membrane]
Probab=74.56 E-value=11 Score=31.73 Aligned_cols=101 Identities=17% Similarity=0.212 Sum_probs=66.1
Q ss_pred hhhhhhhhcceEEEEecccccc--------------C-hHHHHHHHHHHhhCCCEEEEeCCchhhhhhhhHHHHhhcCCC
Q 022475 104 PEIWSIVEKAKYYYIAGFFLTV--------------S-PESIQMVAEHAAAKNKVFMMNLSAPFICEFFREPQEKALPYM 168 (296)
Q Consensus 104 ~~~~~~~~~~~~~~i~g~~~~~--------------~-~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~ 168 (296)
+++.+.++++|+++.+|+.+.. + .+....+++.+.+.+.++.+=-+.+.......+.++.-.+..
T Consensus 56 ~e~~~~i~~A~li~pDG~gvV~~ar~~~g~~~~~rv~G~Dl~~~Ll~~a~~~~~~vfllGgkp~V~~~a~~~l~~~~p~l 135 (253)
T COG1922 56 PEFREILNQADLILPDGIGVVRAARRLLGQPLPERVAGTDLVEALLKRAAEEGKRVFLLGGKPGVAEQAAAKLRAKYPGL 135 (253)
T ss_pred HHHHHHHhhcCEEccCchhHHHHHHHHhCccCcccCChHHHHHHHHHHhCccCceEEEecCCHHHHHHHHHHHHHHCCCc
Confidence 5577788999999999975421 1 267788999988888888777666666565666666666766
Q ss_pred cEEEcCHHHHHHHHHHcCCCCCCHHHHHHHHhcCCCCCCCCceEEEEeeCC
Q 022475 169 DYVFGNETEARTFAKVHGWETDNVEEIALKISQWPKASGTHKRITVITQGA 219 (296)
Q Consensus 169 dv~~~n~~E~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~vvvt~G~ 219 (296)
+++-...-.+. .++.+.+++.+ ...+.+.++|-+|.
T Consensus 136 ~ivg~h~GYf~---------~~e~~~i~~~I------~~s~pdil~VgmG~ 171 (253)
T COG1922 136 KIVGSHDGYFD---------PEEEEAIVERI------AASGPDILLVGMGV 171 (253)
T ss_pred eEEEecCCCCC---------hhhHHHHHHHH------HhcCCCEEEEeCCC
Confidence 66654422111 11124556666 34566777777775
No 100
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=73.66 E-value=12 Score=30.73 Aligned_cols=50 Identities=18% Similarity=0.119 Sum_probs=39.5
Q ss_pred cceEEEEeccccccChHHHHHHHHHHhhCCCEEEEeCCchhhhhhhhHHHHhhcCCCcEEE
Q 022475 112 KAKYYYIAGFFLTVSPESIQMVAEHAAAKNKVFMMNLSAPFICEFFREPQEKALPYMDYVF 172 (296)
Q Consensus 112 ~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~dv~~ 172 (296)
..|.+.++|. .++..+.+.++++..++..+|+++.|+... .+.+.+|.++
T Consensus 27 gtdai~vGGS-~~vt~~~~~~~v~~ik~~~lPvilfp~~~~----------~i~~~aDa~l 76 (223)
T TIGR01768 27 GTDAILIGGS-QGVTYEKTDTLIEALRRYGLPIILFPSNPT----------NVSRDADALF 76 (223)
T ss_pred CCCEEEEcCC-CcccHHHHHHHHHHHhccCCCEEEeCCCcc----------ccCcCCCEEE
Confidence 4699999884 456778888888888988899999887654 5667888776
No 101
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=73.08 E-value=22 Score=25.91 Aligned_cols=39 Identities=13% Similarity=0.200 Sum_probs=28.4
Q ss_pred hhhhcceEEEEeccccccChHHHHHHHHHHhhCCCEEEEeCCchh
Q 022475 108 SIVEKAKYYYIAGFFLTVSPESIQMVAEHAAAKNKVFMMNLSAPF 152 (296)
Q Consensus 108 ~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 152 (296)
+.+.+.|++++. .+.+...++...+.+.|+ .++|.+..+
T Consensus 62 ~~~~~~Dvvf~a-----~~~~~~~~~~~~~~~~g~-~ViD~s~~~ 100 (121)
T PF01118_consen 62 EELSDVDVVFLA-----LPHGASKELAPKLLKAGI-KVIDLSGDF 100 (121)
T ss_dssp HHHTTESEEEE------SCHHHHHHHHHHHHHTTS-EEEESSSTT
T ss_pred hHhhcCCEEEec-----CchhHHHHHHHHHhhCCc-EEEeCCHHH
Confidence 446889999995 466777888888888888 555776554
No 102
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=72.25 E-value=12 Score=29.67 Aligned_cols=44 Identities=11% Similarity=0.184 Sum_probs=25.9
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCchhhhhhhhHHHHhhcCCCcEE
Q 022475 128 ESIQMVAEHAAAKNKVFMMNLSAPFICEFFREPQEKALPYMDYV 171 (296)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~dv~ 171 (296)
+.+..+++.+.+++.++.+=-+.+...+...+.++.-.+...++
T Consensus 35 dl~~~l~~~~~~~~~~vfllG~~~~v~~~~~~~l~~~yP~l~i~ 78 (177)
T TIGR00696 35 DLMEELCQRAGKEKLPIFLYGGKPDVLQQLKVKLIKEYPKLKIV 78 (177)
T ss_pred HHHHHHHHHHHHcCCeEEEECCCHHHHHHHHHHHHHHCCCCEEE
Confidence 56667777777777666555555554444555555555555554
No 103
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=70.80 E-value=7.1 Score=38.67 Aligned_cols=53 Identities=26% Similarity=0.454 Sum_probs=37.2
Q ss_pred HHhcCCCCCCCCceEEEEeeCC----CcEEEEECCeEEEEecccCCCccccCCCCCchhhhHHHH
Q 022475 198 KISQWPKASGTHKRITVITQGA----DPVVVAEDGKVKLFPVILLPKEKLVDTNGAGDAFVGGFL 258 (296)
Q Consensus 198 ~l~~~~~~~~~g~~~vvvt~G~----~G~~~~~~~~~~~~~~~~~~~~~vvd~tGaGDaf~ag~~ 258 (296)
.|.++|.+.++|+-..|+-.|- -|..+.++|+...+ +++|+|||||.=++.-+
T Consensus 71 FL~kyPeYDGRgV~IaIlDtGvDP~apGl~vttdGkpKv~--------dviDctGaGDVDts~~v 127 (1304)
T KOG1114|consen 71 FLKKYPEYDGRGVTIAILDTGVDPSAPGLQVTTDGKPKVK--------DVIDCTGAGDVDTSTEV 127 (1304)
T ss_pred HHHhCcCCCCCceEEEEeecCCCCCCCCceEecCCCccee--------EEEecCCCCccccceEE
Confidence 4445555588888877776664 46777788876432 68999999998665433
No 104
>PRK06901 aspartate-semialdehyde dehydrogenase; Provisional
Probab=70.66 E-value=33 Score=29.94 Aligned_cols=88 Identities=6% Similarity=-0.013 Sum_probs=52.0
Q ss_pred cEEEEEeecCCchhHHHHHHHHhcCCceeEEe-cC-C-CCceeEEEEEeCCeeceeeccccccccCccccCChhhhhhhh
Q 022475 35 ATSYIGCIGKDKFGEEMKKNSTAAGVNVKYYE-DE-S-APTGTCAVCVVGGERSLVANLSAANCYKSEHLKRPEIWSIVE 111 (296)
Q Consensus 35 ~v~~~~~vG~D~~g~~i~~~l~~~gi~~~~~~-~~-~-~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (296)
++.+ |.-| ..|+.+++.|++.+.....++ .. . ...+..+.+ .|+ .+..+.+.. ..++
T Consensus 5 ~iAi-GATg--~VG~~~l~~Leer~fpv~~l~l~~s~~~s~gk~i~f--~g~-----------~~~V~~l~~----~~f~ 64 (322)
T PRK06901 5 NIAI-AAEF--ELSEKLLEALEQSDLEIEQISIVEIEPFGEEQGIRF--NNK-----------AVEQIAPEE----VEWA 64 (322)
T ss_pred eEEE-ecCc--HHHHHHHHHHHhcCCchhheeecccccccCCCEEEE--CCE-----------EEEEEECCc----cCcc
Confidence 4555 5544 479999999999999877543 11 1 222222111 222 233344433 2356
Q ss_pred cceEEEEeccccccChHHHHHHHHHHhhCCCEEEEeC
Q 022475 112 KAKYYYIAGFFLTVSPESIQMVAEHAAAKNKVFMMNL 148 (296)
Q Consensus 112 ~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 148 (296)
+.|++++ . ..+...+....+.+.|..++-|-
T Consensus 65 ~vDia~f-a-----g~~~s~~~ap~a~~aG~~VIDnS 95 (322)
T PRK06901 65 DFNYVFF-A-----GKMAQAEHLAQAAEAGCIVIDLY 95 (322)
T ss_pred cCCEEEE-c-----CHHHHHHHHHHHHHCCCEEEECC
Confidence 7999888 3 34566677777888887776554
No 105
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=69.98 E-value=15 Score=28.86 Aligned_cols=44 Identities=11% Similarity=0.073 Sum_probs=22.8
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCchhhhhhhhHHHHhhcCCCcEE
Q 022475 128 ESIQMVAEHAAAKNKVFMMNLSAPFICEFFREPQEKALPYMDYV 171 (296)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~dv~ 171 (296)
+.+..+++.+.+.+.++.+=-+.+.......+.+..-.+...++
T Consensus 35 dl~~~l~~~~~~~~~~ifllG~~~~~~~~~~~~l~~~yP~l~iv 78 (172)
T PF03808_consen 35 DLFPDLLRRAEQRGKRIFLLGGSEEVLEKAAANLRRRYPGLRIV 78 (172)
T ss_pred HHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHCCCeEEE
Confidence 45566666666666555444444443334444455555555555
No 106
>COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism]
Probab=68.56 E-value=44 Score=29.82 Aligned_cols=106 Identities=12% Similarity=0.117 Sum_probs=61.1
Q ss_pred hhcCCCcEEEEEeecCCchhHHHHHHHHhcCCceeEEecCCCCceeEEEEEeCCeeceeeccccccccCccccCChhhhh
Q 022475 29 MLQIPGATSYIGCIGKDKFGEEMKKNSTAAGVNVKYYEDESAPTGTCAVCVVGGERSLVANLSAANCYKSEHLKRPEIWS 108 (296)
Q Consensus 29 l~~lg~~v~~~~~vG~D~~g~~i~~~l~~~gi~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (296)
|.+.|.++.--+.+=.. --..+...|++.||++.++...+ ++.+.. .
T Consensus 97 la~aGD~iVss~~LYGG-T~~lf~~tl~~~Gi~v~fvd~~d----------------------------~~~~~~----a 143 (426)
T COG2873 97 LAGAGDNIVSSSKLYGG-TYNLFSHTLKRLGIEVRFVDPDD----------------------------PENFEA----A 143 (426)
T ss_pred hccCCCeeEeeccccCc-hHHHHHHHHHhcCcEEEEeCCCC----------------------------HHHHHH----H
Confidence 56667776665544332 23455667888999888763221 111111 1
Q ss_pred hhhcceEEEEeccc-cccChHHHHHHHHHHhhCCCEEEEeC--CchhhhhhhhHHHHhhcCCCcEEEcC
Q 022475 109 IVEKAKYYYIAGFF-LTVSPESIQMVAEHAAAKNKVFMMNL--SAPFICEFFREPQEKALPYMDYVFGN 174 (296)
Q Consensus 109 ~~~~~~~~~i~g~~-~~~~~~~~~~~~~~~~~~~~~~~~d~--~~~~~~~~~~~~~~~~l~~~dv~~~n 174 (296)
+=++.+.|++..+. +...---++.+.+.|+++|+++++|- ..+. .++++-.-+|++.=+
T Consensus 144 I~~nTkavf~EtigNP~~~v~Die~ia~iAh~~gvpliVDNT~atpy-------l~rP~~hGADIVvHS 205 (426)
T COG2873 144 IDENTKAVFAETIGNPGLDVLDIEAIAEIAHRHGVPLIVDNTFATPY-------LCRPIEHGADIVVHS 205 (426)
T ss_pred hCcccceEEEEeccCCCccccCHHHHHHHHHHcCCcEEEecCCCcce-------ecchhhcCCCEEEEe
Confidence 12346666666543 22222235678889999999988885 2222 144555678998754
No 107
>PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed
Probab=68.33 E-value=19 Score=29.85 Aligned_cols=51 Identities=10% Similarity=0.022 Sum_probs=39.6
Q ss_pred hcceEEEEeccccccChHHHHHHHHHHhhCCCEEEEeCCchhhhhhhhHHHHhhcCCCcEEE
Q 022475 111 EKAKYYYIAGFFLTVSPESIQMVAEHAAAKNKVFMMNLSAPFICEFFREPQEKALPYMDYVF 172 (296)
Q Consensus 111 ~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~dv~~ 172 (296)
...|.+.++|. .++..+.+.++++..++..+|+++.|+... .+-+.+|.++
T Consensus 31 ~gtdai~vGGS-~~vt~~~~~~~v~~ik~~~lPvilfp~~~~----------~i~~~aDa~l 81 (232)
T PRK04169 31 SGTDAIIVGGS-DGVTEENVDELVKAIKEYDLPVILFPGNIE----------GISPGADAYL 81 (232)
T ss_pred cCCCEEEEcCC-CccchHHHHHHHHHHhcCCCCEEEeCCCcc----------ccCcCCCEEE
Confidence 55799999884 345677888888888888889999887654 5667788775
No 108
>PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=67.33 E-value=48 Score=30.38 Aligned_cols=37 Identities=14% Similarity=0.143 Sum_probs=23.9
Q ss_pred cceEEEEecccccc-ChHHHHHHHHHHhhCCCEEEEeC
Q 022475 112 KAKYYYIAGFFLTV-SPESIQMVAEHAAAKNKVFMMNL 148 (296)
Q Consensus 112 ~~~~~~i~g~~~~~-~~~~~~~~~~~~~~~~~~~~~d~ 148 (296)
+.+.|++....... .---+..+.+.|+++|++++.|-
T Consensus 147 ~Tk~I~~e~pgnP~~~v~Di~~I~~iA~~~gi~livD~ 184 (432)
T PRK06702 147 KTKLVYAESLGNPAMNVLNFKEFSDAAKELEVPFIVDN 184 (432)
T ss_pred CCeEEEEEcCCCccccccCHHHHHHHHHHcCCEEEEEC
Confidence 45677776422111 11136788899999999988886
No 109
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=66.55 E-value=15 Score=30.12 Aligned_cols=52 Identities=19% Similarity=0.237 Sum_probs=40.5
Q ss_pred hcceEEEEeccccccChHHHHHHHHHHhhCCCE--EEEeCCchhhhhhhhHHHHhhcCCCcEEE
Q 022475 111 EKAKYYYIAGFFLTVSPESIQMVAEHAAAKNKV--FMMNLSAPFICEFFREPQEKALPYMDYVF 172 (296)
Q Consensus 111 ~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~--~~~d~~~~~~~~~~~~~~~~~l~~~dv~~ 172 (296)
..+|++.+.. + ....+.+++++.++.|++ +++||..|. +.++.+++.+|++.
T Consensus 83 agad~It~H~---E-~~~~~~r~i~~Ik~~G~kaGv~lnP~Tp~------~~i~~~l~~vD~Vl 136 (220)
T COG0036 83 AGADIITFHA---E-ATEHIHRTIQLIKELGVKAGLVLNPATPL------EALEPVLDDVDLVL 136 (220)
T ss_pred hCCCEEEEEe---c-cCcCHHHHHHHHHHcCCeEEEEECCCCCH------HHHHHHHhhCCEEE
Confidence 3478887753 3 445667788889999987 899998765 77889999999887
No 110
>COG4607 CeuA ABC-type enterochelin transport system, periplasmic component [Inorganic ion transport and metabolism]
Probab=65.97 E-value=31 Score=29.66 Aligned_cols=60 Identities=18% Similarity=0.232 Sum_probs=33.9
Q ss_pred hcceEEEEeccccccChHHHHHHHHHHhhCCCEEEEeCCchhhhhhhhHHHHhhcCCCcEEEcCHHHHHHHH
Q 022475 111 EKAKYYYIAGFFLTVSPESIQMVAEHAAAKNKVFMMNLSAPFICEFFREPQEKALPYMDYVFGNETEARTFA 182 (296)
Q Consensus 111 ~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~dv~~~n~~E~~~l~ 182 (296)
.++|+++++|.+ ...+.++.+.+ ..+.++.....+.....+.++.+-+ |+.-++|+..+.
T Consensus 117 ~kPdLIIiggR~----ak~yd~l~kiA----Pti~l~~d~~n~~~S~~~n~e~Lg~----IFgkE~eAk~~~ 176 (320)
T COG4607 117 AKPDLIIIGGRA----AKAYDKLSKIA----PTIDLGADTANLIESTKQNIETLGK----IFGKEEEAKELL 176 (320)
T ss_pred cCCCEEEECcHH----HHHHHHHHhhC----CeEEeccchHHHHHHHHHHHHHHHH----HhCchHHHHHHH
Confidence 578999998643 25555555544 3677777554443333333333333 455567776654
No 111
>PRK05967 cystathionine beta-lyase; Provisional
Probab=65.40 E-value=89 Score=28.29 Aligned_cols=37 Identities=22% Similarity=0.134 Sum_probs=27.7
Q ss_pred cceEEEEeccc-cccChHHHHHHHHHHhhCCCEEEEeC
Q 022475 112 KAKYYYIAGFF-LTVSPESIQMVAEHAAAKNKVFMMNL 148 (296)
Q Consensus 112 ~~~~~~i~g~~-~~~~~~~~~~~~~~~~~~~~~~~~d~ 148 (296)
+.++|+++... .......+..+.+.|+++|+.+++|-
T Consensus 149 ~TklV~lesPsNP~l~v~dl~~I~~la~~~g~~vvVD~ 186 (395)
T PRK05967 149 NTKVVHTEAPGSNTFEMQDIPAIAEAAHRHGAIVMMDN 186 (395)
T ss_pred CceEEEEECCCCCCCcHHHHHHHHHHHHHhCCEEEEEC
Confidence 46788888533 33445678889999999999988885
No 112
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=65.00 E-value=65 Score=27.40 Aligned_cols=184 Identities=21% Similarity=0.249 Sum_probs=97.9
Q ss_pred EEeecCCchhHHHHHHHHhcC-CceeEEecCCCCceeEEEEEeCCe-ec-eeeccccccccCccccCChhhhhhhhcceE
Q 022475 39 IGCIGKDKFGEEMKKNSTAAG-VNVKYYEDESAPTGTCAVCVVGGE-RS-LVANLSAANCYKSEHLKRPEIWSIVEKAKY 115 (296)
Q Consensus 39 ~~~vG~D~~g~~i~~~l~~~g-i~~~~~~~~~~~t~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (296)
++.+|....|+.|...|.+.| +.-..+...+. +.+ +. .... +.... .....+...++|+
T Consensus 4 IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~v~~~----------~~e~~~~l~~~------~g~~~--~~~~~~~~~~adv 65 (266)
T COG0345 4 IGFIGAGNMGEAILSGLLKSGALPPEEIIVTNR----------SEEKRAALAAE------YGVVT--TTDNQEAVEEADV 65 (266)
T ss_pred EEEEccCHHHHHHHHHHHhcCCCCcceEEEeCC----------CHHHHHHHHHH------cCCcc--cCcHHHHHhhCCE
Confidence 677787779999999999888 44333322211 111 11 1111 11110 1112245678999
Q ss_pred EEEeccccccChHHHHHHHHHHhh--CC-CEEEEeCCchhhhhhhhHHHHhhcCCCcEEE--cCHHHHHH--HHHHcCCC
Q 022475 116 YYIAGFFLTVSPESIQMVAEHAAA--KN-KVFMMNLSAPFICEFFREPQEKALPYMDYVF--GNETEART--FAKVHGWE 188 (296)
Q Consensus 116 ~~i~g~~~~~~~~~~~~~~~~~~~--~~-~~~~~d~~~~~~~~~~~~~~~~~l~~~dv~~--~n~~E~~~--l~~~~~~~ 188 (296)
+++. +-|..+..++...+. .+ ..+.+-.+-+ .+.++.+++...++- ||..-.-. .+......
T Consensus 66 v~La-----vKPq~~~~vl~~l~~~~~~~lvISiaAGv~------~~~l~~~l~~~~vvR~MPNt~a~vg~g~t~i~~~~ 134 (266)
T COG0345 66 VFLA-----VKPQDLEEVLSKLKPLTKDKLVISIAAGVS------IETLERLLGGLRVVRVMPNTPALVGAGVTAISANA 134 (266)
T ss_pred EEEE-----eChHhHHHHHHHhhcccCCCEEEEEeCCCC------HHHHHHHcCCCceEEeCCChHHHHcCcceeeecCc
Confidence 9994 577777888887763 33 2344444333 355777887667765 67653321 11111111
Q ss_pred CC--CHHHHHHHHhcCCCCCCCCceEEEEeeCCCcEEEEECCeEEEEecccCCCccccCCCCCchhhhHHHHHHHh----
Q 022475 189 TD--NVEEIALKISQWPKASGTHKRITVITQGADPVVVAEDGKVKLFPVILLPKEKLVDTNGAGDAFVGGFLSQLV---- 262 (296)
Q Consensus 189 ~~--~~~~~~~~l~~~~~~~~~g~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~~~vvd~tGaGDaf~ag~~~~l~---- 262 (296)
.- ...+.+..+. ... |+.++++....+ -+...+|+|-+|..-|+-+|.
T Consensus 135 ~~~~~~~~~v~~l~-----~~~-------------------G~v~~v~E~~~d--a~TaisGSgPAyv~~~iEal~~agv 188 (266)
T COG0345 135 NVSEEDKAFVEALL-----SAV-------------------GKVVEVEESLMD--AVTALSGSGPAYVFLFIEALADAGV 188 (266)
T ss_pred cCCHHHHHHHHHHH-----Hhc-------------------CCeEEechHHhh--HHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 11 1122333331 111 122222211111 356679999999999987775
Q ss_pred -cCCCHHHHHHHhhHH
Q 022475 263 -QEKPVEDCVRTGCYA 277 (296)
Q Consensus 263 -~~~~~~~a~~~A~~~ 277 (296)
.|.+.++|.+++...
T Consensus 189 ~~Gl~~~~A~~l~~~t 204 (266)
T COG0345 189 RLGLPREEARELAAQT 204 (266)
T ss_pred HcCCCHHHHHHHHHHH
Confidence 478888888777543
No 113
>COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=64.33 E-value=1e+02 Score=27.16 Aligned_cols=95 Identities=14% Similarity=0.083 Sum_probs=52.9
Q ss_pred CcEEEEEeecCCchhHHHHHHHHhcCCceeEEe--cCCCCceeEEEEEeCCeeceeeccccccccCccccCChhhhhhhh
Q 022475 34 GATSYIGCIGKDKFGEEMKKNSTAAGVNVKYYE--DESAPTGTCAVCVVGGERSLVANLSAANCYKSEHLKRPEIWSIVE 111 (296)
Q Consensus 34 ~~v~~~~~vG~D~~g~~i~~~l~~~gi~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (296)
.++.++|.-| ..|+.+++.|+++....+-+. -+.+.-|..+....+.. ... ++.... ....+
T Consensus 2 ~~VavvGATG--~VG~~~~~~L~e~~f~~~~~~~~AS~rSaG~~~~~f~~~~----------~~v-~~~~~~---~~~~~ 65 (334)
T COG0136 2 LNVAVLGATG--AVGQVLLELLEERHFPFEELVLLASARSAGKKYIEFGGKS----------IGV-PEDAAD---EFVFS 65 (334)
T ss_pred cEEEEEeccc--hHHHHHHHHHHhcCCCcceEEEEecccccCCccccccCcc----------ccC-cccccc---ccccc
Confidence 4567777755 479999999999766665331 22222222222111100 001 111111 12245
Q ss_pred cceEEEEeccccccChHHHHHHHHHHhhCCCEEEEeCC
Q 022475 112 KAKYYYIAGFFLTVSPESIQMVAEHAAAKNKVFMMNLS 149 (296)
Q Consensus 112 ~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 149 (296)
+.|+++++. ..+...++...+.+.|+.++-|.+
T Consensus 66 ~~Divf~~a-----g~~~s~~~~p~~~~~G~~VIdnsS 98 (334)
T COG0136 66 DVDIVFFAA-----GGSVSKEVEPKAAEAGCVVIDNSS 98 (334)
T ss_pred cCCEEEEeC-----chHHHHHHHHHHHHcCCEEEeCCc
Confidence 799999863 445567888889999977665543
No 114
>PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B ....
Probab=64.28 E-value=30 Score=31.14 Aligned_cols=109 Identities=13% Similarity=0.121 Sum_probs=57.3
Q ss_pred hhcCCCceeecCChhHHHHHHHHHhhcCCCcEEEEEeecCCchhHHHHHHHHhcCCceeEEecCCCCceeEEEEEeCCee
Q 022475 5 LASKENVEYIAGGATQNSIKVAQWMLQIPGATSYIGCIGKDKFGEEMKKNSTAAGVNVKYYEDESAPTGTCAVCVVGGER 84 (296)
Q Consensus 5 ~~~~~~~~~~~GG~~~n~a~~~~~l~~lg~~v~~~~~vG~D~~g~~i~~~l~~~gi~~~~~~~~~~~t~~~~~~~~~~~~ 84 (296)
+........++.|.+.-.+..++ +++.|..+.....+=. ..-..+.+.+...||.+.++..
T Consensus 67 Le~g~~a~~~~SGmaAi~~~l~~-ll~~Gd~iv~~~~~Y~-~t~~~~~~~l~~~gv~v~~~d~----------------- 127 (386)
T PF01053_consen 67 LEGGEDALLFSSGMAAISAALLA-LLKPGDHIVASDDLYG-GTYRLLEELLPRFGVEVTFVDP----------------- 127 (386)
T ss_dssp HHT-SEEEEESSHHHHHHHHHHH-HS-TTBEEEEESSSSH-HHHHHHHHCHHHTTSEEEEEST-----------------
T ss_pred hhcccceeeccchHHHHHHHHHh-hcccCCceEecCCccC-cchhhhhhhhcccCcEEEEeCc-----------------
Confidence 33344455677787777666655 5665665444332101 1223355567777887765411
Q ss_pred ceeeccccccccCccccCChhhhhhh-hcceEEEEecccc-ccChHHHHHHHHHHhhCC-CEEEEeC
Q 022475 85 SLVANLSAANCYKSEHLKRPEIWSIV-EKAKYYYIAGFFL-TVSPESIQMVAEHAAAKN-KVFMMNL 148 (296)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~g~~~-~~~~~~~~~~~~~~~~~~-~~~~~d~ 148 (296)
-..+.+. ..+ .+.++||+....- ....--+..+.+.+++.| +++++|-
T Consensus 128 -----------~d~~~l~-----~~l~~~t~~v~~EspsNP~l~v~Dl~~i~~~a~~~g~~~~vVDn 178 (386)
T PF01053_consen 128 -----------TDLEALE-----AALRPNTKLVFLESPSNPTLEVPDLEAIAKLAKEHGDILVVVDN 178 (386)
T ss_dssp -----------TSHHHHH-----HHHCTTEEEEEEESSBTTTTB---HHHHHHHHHHTTT-EEEEEC
T ss_pred -----------hhHHHHH-----hhccccceEEEEEcCCCcccccccHHHHHHHHHHhCCceEEeec
Confidence 0111121 112 2678888876432 222245677888899998 9888885
No 115
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=63.37 E-value=19 Score=25.11 Aligned_cols=78 Identities=18% Similarity=0.121 Sum_probs=50.7
Q ss_pred eecC-CchhHHHHHHHHhcCCceeEEecCCCCceeEEEEEeCCeeceeeccccccccCccccCChhhhhhhhcceEEEEe
Q 022475 41 CIGK-DKFGEEMKKNSTAAGVNVKYYEDESAPTGTCAVCVVGGERSLVANLSAANCYKSEHLKRPEIWSIVEKAKYYYIA 119 (296)
Q Consensus 41 ~vG~-D~~g~~i~~~l~~~gi~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 119 (296)
.||. +..-..+++.+++.|....+. +. +++.. -....+ .+.+.++|+|++-
T Consensus 4 iVGG~~~~~~~~~~~~~~~G~~~~~h---g~---------~~~~~-----------~~~~~l-----~~~i~~aD~VIv~ 55 (97)
T PF10087_consen 4 IVGGREDRERRYKRILEKYGGKLIHH---GR---------DGGDE-----------KKASRL-----PSKIKKADLVIVF 55 (97)
T ss_pred EEcCCcccHHHHHHHHHHcCCEEEEE---ec---------CCCCc-----------cchhHH-----HHhcCCCCEEEEE
Confidence 4554 447788889999988876543 00 01110 000112 2357789999884
Q ss_pred ccccccChHHHHHHHHHHhhCCCEEEEeC
Q 022475 120 GFFLTVSPESIQMVAEHAAAKNKVFMMNL 148 (296)
Q Consensus 120 g~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 148 (296)
+..++......+-+.|++.++|+++--
T Consensus 56 --t~~vsH~~~~~vk~~akk~~ip~~~~~ 82 (97)
T PF10087_consen 56 --TDYVSHNAMWKVKKAAKKYGIPIIYSR 82 (97)
T ss_pred --eCCcChHHHHHHHHHHHHcCCcEEEEC
Confidence 235688999999999999999987765
No 116
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=63.34 E-value=31 Score=27.05 Aligned_cols=44 Identities=20% Similarity=0.147 Sum_probs=17.9
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCchhhhhhhhHHHHhhcCCCcEE
Q 022475 128 ESIQMVAEHAAAKNKVFMMNLSAPFICEFFREPQEKALPYMDYV 171 (296)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~dv~ 171 (296)
+.+..+++.+.+++.++.+=-..+...+...+.++...+..+++
T Consensus 33 dl~~~ll~~~~~~~~~v~llG~~~~~~~~~~~~l~~~yp~l~i~ 76 (171)
T cd06533 33 DLMPALLELAAQKGLRVFLLGAKPEVLEKAAERLRARYPGLKIV 76 (171)
T ss_pred HHHHHHHHHHHHcCCeEEEECCCHHHHHHHHHHHHHHCCCcEEE
Confidence 34444555544444443333333333333333344444444433
No 117
>PRK09028 cystathionine beta-lyase; Provisional
Probab=62.85 E-value=70 Score=28.93 Aligned_cols=38 Identities=13% Similarity=0.224 Sum_probs=27.3
Q ss_pred hcceEEEEeccc-cccChHHHHHHHHHHhhCCCEEEEeC
Q 022475 111 EKAKYYYIAGFF-LTVSPESIQMVAEHAAAKNKVFMMNL 148 (296)
Q Consensus 111 ~~~~~~~i~g~~-~~~~~~~~~~~~~~~~~~~~~~~~d~ 148 (296)
.+.++++++... +......+.++.+.++++|+.+++|-
T Consensus 145 ~~TklV~lespsNPtg~v~dl~~I~~la~~~g~~lvvD~ 183 (394)
T PRK09028 145 PNTKVLFLESPGSITMEVQDVPTLSRIAHEHDIVVMLDN 183 (394)
T ss_pred cCceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEEC
Confidence 357888887543 22334567888899999999888885
No 118
>TIGR00334 5S_RNA_mat_M5 ribonuclease M5. This family of orthologous proteins shows a weak but significant similarity to the central region of the DnaG-type DNA primase. The region of similarity is termed the Toprim (topoisomerase-primase) domain and is also shared by RecR, OLD family nucleases, and type IA and II topoisomerases.
Probab=62.67 E-value=27 Score=27.47 Aligned_cols=85 Identities=20% Similarity=0.230 Sum_probs=54.6
Q ss_pred cceEEEEeccccccChHHHHHHHHHHhhCCCEEEEeCCchhhhhhhhHHHHhhcCCCcEEEcCHHHHHHHHHHcCCCCCC
Q 022475 112 KAKYYYIAGFFLTVSPESIQMVAEHAAAKNKVFMMNLSAPFICEFFREPQEKALPYMDYVFGNETEARTFAKVHGWETDN 191 (296)
Q Consensus 112 ~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~dv~~~n~~E~~~l~~~~~~~~~~ 191 (296)
+++++..+|+. ++.+.+..+.+..+++|+.++.||..+. ..-+..+.+.+|.+--.++...++..=-+..+....+
T Consensus 22 d~~~I~T~Gs~--i~~~~i~~i~~~~~~rgVIIfTDpD~~G--ekIRk~i~~~vp~~khafi~~~~a~~~~~~iGVE~As 97 (174)
T TIGR00334 22 DVDVIETNGSA--LKDETINLIKKAQKKQGVIILTDPDFPG--EKIRKKIEQHLPGYENCFIPKHLAKPNKKKIGVEEAS 97 (174)
T ss_pred CceEEEECCCc--cCHHHHHHHHHHhhcCCEEEEeCCCCch--HHHHHHHHHHCCCCeEEeeeHHhcCcCCCCcccCCCC
Confidence 47888888854 4778888888888889999888885433 2234456666777777788777764200112333445
Q ss_pred HHHHHHHHh
Q 022475 192 VEEIALKIS 200 (296)
Q Consensus 192 ~~~~~~~l~ 200 (296)
++.+.+.|.
T Consensus 98 ~e~I~~AL~ 106 (174)
T TIGR00334 98 VEAIIAALE 106 (174)
T ss_pred HHHHHHHHH
Confidence 666666663
No 119
>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional
Probab=62.21 E-value=1.1e+02 Score=27.15 Aligned_cols=94 Identities=11% Similarity=0.167 Sum_probs=52.3
Q ss_pred CcEEEEEeecCCchhHHHHHHHH-hcCCceeEE--ecCCCCceeEEEEEeCCeeceeeccccccccCccccCChhhhhhh
Q 022475 34 GATSYIGCIGKDKFGEEMKKNST-AAGVNVKYY--EDESAPTGTCAVCVVGGERSLVANLSAANCYKSEHLKRPEIWSIV 110 (296)
Q Consensus 34 ~~v~~~~~vG~D~~g~~i~~~l~-~~gi~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (296)
.++.++|.-| ..|+.+++.|+ +..+....+ .......|..+.. .++ .+..+.++. ..+
T Consensus 6 ~~VaIvGATG--~vG~ell~lL~~h~~f~v~~l~~~aS~~saGk~~~~--~~~-----------~l~v~~~~~----~~~ 66 (347)
T PRK06728 6 YHVAVVGATG--AVGQKIIELLEKETKFNIAEVTLLSSKRSAGKTVQF--KGR-----------EIIIQEAKI----NSF 66 (347)
T ss_pred CEEEEEeCCC--HHHHHHHHHHHHCCCCCcccEEEEECcccCCCCeee--CCc-----------ceEEEeCCH----HHh
Confidence 5666666644 57999999999 477774432 1222223333211 111 122222222 224
Q ss_pred hcceEEEEeccccccChHHHHHHHHHHhhCCCEEEEeCCchh
Q 022475 111 EKAKYYYIAGFFLTVSPESIQMVAEHAAAKNKVFMMNLSAPF 152 (296)
Q Consensus 111 ~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 152 (296)
.+.|+++++ .+.+...++...+.+.|+++ +|.++.+
T Consensus 67 ~~~Divf~a-----~~~~~s~~~~~~~~~~G~~V-ID~Ss~f 102 (347)
T PRK06728 67 EGVDIAFFS-----AGGEVSRQFVNQAVSSGAIV-IDNTSEY 102 (347)
T ss_pred cCCCEEEEC-----CChHHHHHHHHHHHHCCCEE-EECchhh
Confidence 678999885 35677777888777777544 4665443
No 120
>PHA00438 hypothetical protein
Probab=62.03 E-value=6.1 Score=26.15 Aligned_cols=17 Identities=41% Similarity=0.792 Sum_probs=15.0
Q ss_pred CCCCchhhhHHHHHHHh
Q 022475 246 TNGAGDAFVGGFLSQLV 262 (296)
Q Consensus 246 ~tGaGDaf~ag~~~~l~ 262 (296)
-.|..++|++||+.|+-
T Consensus 46 ~~G~SE~~IaGfl~Gl~ 62 (81)
T PHA00438 46 QAGYSEAFIAGFLAGLQ 62 (81)
T ss_pred HcCCcHHHHHHHHHHHH
Confidence 37999999999999973
No 121
>PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=61.99 E-value=1e+02 Score=27.61 Aligned_cols=38 Identities=8% Similarity=0.075 Sum_probs=28.7
Q ss_pred hhcceEEEEeccccccChHHHHHHHHHHhhCCCE-EEEeCCchh
Q 022475 110 VEKAKYYYIAGFFLTVSPESIQMVAEHAAAKNKV-FMMNLSAPF 152 (296)
Q Consensus 110 ~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~-~~~d~~~~~ 152 (296)
+.+.|+++++ .+.+...++...+.+.|++ +++|.++.+
T Consensus 63 ~~~~Divf~a-----~~~~~s~~~~~~~~~aG~~~~VID~Ss~f 101 (369)
T PRK06598 63 LKKLDIIITC-----QGGDYTNEVYPKLRAAGWQGYWIDAASTL 101 (369)
T ss_pred hcCCCEEEEC-----CCHHHHHHHHHHHHhCCCCeEEEECChHH
Confidence 4678999885 3667778888888888974 788887654
No 122
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=61.58 E-value=56 Score=26.09 Aligned_cols=68 Identities=16% Similarity=0.186 Sum_probs=44.7
Q ss_pred cceEEEEeccccccChHHHHHHHHHHhhCCCEEEEeCCchhhhhh-hhHH-------HHh-hcCCCcEEEcCHHHHHHHH
Q 022475 112 KAKYYYIAGFFLTVSPESIQMVAEHAAAKNKVFMMNLSAPFICEF-FREP-------QEK-ALPYMDYVFGNETEARTFA 182 (296)
Q Consensus 112 ~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~-~~~~-------~~~-~l~~~dv~~~n~~E~~~l~ 182 (296)
+.|++++-+.. ....+..+.+..++.|.++++|+....|.+. |... -+. ...++|.++....+.+...
T Consensus 92 ~~~ii~ilg~~---~g~~~~~~~r~~~~~g~~v~vN~DGlEWkR~KW~~~~k~~lk~~E~~avk~ad~lIaDs~~I~~y~ 168 (185)
T PF09314_consen 92 KYDIILILGYG---IGPFFLPFLRKLRKKGGKVVVNMDGLEWKRAKWGRPAKKYLKFSEKLAVKYADRLIADSKGIQDYI 168 (185)
T ss_pred cCCEEEEEcCC---ccHHHHHHHHhhhhcCCcEEECCCcchhhhhhcCHHHHHHHHHHHHHHHHhCCEEEEcCHHHHHHH
Confidence 35688886532 2456677888888889999999988888543 2111 222 2367899887666555443
No 123
>TIGR01745 asd_gamma aspartate-semialdehyde dehydrogenase, gamma-proteobacterial.
Probab=58.96 E-value=1e+02 Score=27.63 Aligned_cols=38 Identities=0% Similarity=0.031 Sum_probs=28.5
Q ss_pred hhcceEEEEeccccccChHHHHHHHHHHhhCCCE-EEEeCCchh
Q 022475 110 VEKAKYYYIAGFFLTVSPESIQMVAEHAAAKNKV-FMMNLSAPF 152 (296)
Q Consensus 110 ~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~-~~~d~~~~~ 152 (296)
+.+.|+++++. ..+...++...+.+.|.+ +++|-++.+
T Consensus 62 ~~~vDivffa~-----g~~~s~~~~p~~~~aG~~~~VIDnSSa~ 100 (366)
T TIGR01745 62 LKALDIIITCQ-----GGDYTNEIYPKLRESGWQGYWIDAASSL 100 (366)
T ss_pred ccCCCEEEEcC-----CHHHHHHHHHHHHhCCCCeEEEECChhh
Confidence 56789999863 556778888889999974 677776544
No 124
>PRK07050 cystathionine beta-lyase; Provisional
Probab=58.12 E-value=1.4e+02 Score=27.03 Aligned_cols=38 Identities=11% Similarity=0.182 Sum_probs=26.8
Q ss_pred cceEEEEeccc-cccChHHHHHHHHHHhhCCCEEEEeCC
Q 022475 112 KAKYYYIAGFF-LTVSPESIQMVAEHAAAKNKVFMMNLS 149 (296)
Q Consensus 112 ~~~~~~i~g~~-~~~~~~~~~~~~~~~~~~~~~~~~d~~ 149 (296)
+.++++++... +......+..+.+.++++|+.++.|-.
T Consensus 150 ~tklV~le~p~Np~~~~~di~~I~~ia~~~gi~livD~a 188 (394)
T PRK07050 150 NTRLIWLEAPGSVTMEVPDVPAITAAARARGVVTAIDNT 188 (394)
T ss_pred CCeEEEEECCCCCCccHhhHHHHHHHHHHcCCEEEEECC
Confidence 46777776432 234556778888889999998888863
No 125
>PRK08133 O-succinylhomoserine sulfhydrylase; Validated
Probab=57.27 E-value=1.1e+02 Score=27.44 Aligned_cols=37 Identities=16% Similarity=0.211 Sum_probs=21.8
Q ss_pred cceEEEEeccc-cccChHHHHHHHHHHhhCCCEEEEeC
Q 022475 112 KAKYYYIAGFF-LTVSPESIQMVAEHAAAKNKVFMMNL 148 (296)
Q Consensus 112 ~~~~~~i~g~~-~~~~~~~~~~~~~~~~~~~~~~~~d~ 148 (296)
+.++++++..+ +......+.++.+.+++.++.++.|-
T Consensus 146 ~tklV~ie~p~NptG~v~dl~~I~~la~~~gi~livD~ 183 (390)
T PRK08133 146 NTKLFFLETPSNPLTELADIAALAEIAHAAGALLVVDN 183 (390)
T ss_pred CCeEEEEECCCCCCCCcCCHHHHHHHHHHcCCEEEEEC
Confidence 45677765322 11111235677777888888877775
No 126
>PF10911 DUF2717: Protein of unknown function (DUF2717); InterPro: IPR020121 The proteins in this entry are uncharacterised.
Probab=57.10 E-value=8.1 Score=25.56 Aligned_cols=18 Identities=28% Similarity=0.588 Sum_probs=15.4
Q ss_pred CCCCCchhhhHHHHHHHh
Q 022475 245 DTNGAGDAFVGGFLSQLV 262 (296)
Q Consensus 245 d~tGaGDaf~ag~~~~l~ 262 (296)
...|+.++|++||+.|+-
T Consensus 45 r~~G~SE~~I~Gfl~Gl~ 62 (77)
T PF10911_consen 45 RKQGWSESYILGFLAGLQ 62 (77)
T ss_pred HHccccHHHHHHHHHHHH
Confidence 346999999999999984
No 127
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=57.01 E-value=78 Score=28.80 Aligned_cols=118 Identities=13% Similarity=0.119 Sum_probs=63.5
Q ss_pred EeecCCchhHHHHHHHHhcCCceeEEecCCCCceeEEEEEeCCeeceeeccccccccCccccCChhhhhhhhcceEEEEe
Q 022475 40 GCIGKDKFGEEMKKNSTAAGVNVKYYEDESAPTGTCAVCVVGGERSLVANLSAANCYKSEHLKRPEIWSIVEKAKYYYIA 119 (296)
Q Consensus 40 ~~vG~D~~g~~i~~~l~~~gi~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 119 (296)
-.+|-...|+.+.+.|.+.|+.--.+. ++ .-++.. .-...+..+.+...+....+.++|+++.+
T Consensus 182 lvIGAGem~~lva~~L~~~g~~~i~Ia--NR----------T~erA~----~La~~~~~~~~~l~el~~~l~~~DvViss 245 (414)
T COG0373 182 LVIGAGEMGELVAKHLAEKGVKKITIA--NR----------TLERAE----ELAKKLGAEAVALEELLEALAEADVVISS 245 (414)
T ss_pred EEEcccHHHHHHHHHHHhCCCCEEEEE--cC----------CHHHHH----HHHHHhCCeeecHHHHHHhhhhCCEEEEe
Confidence 345555689999999999998554432 11 001100 00012222222223344678999999998
Q ss_pred cccc--ccChHHHHHHHHHHhhCCCEEEEeCCchhhhhhhhHHHHhhcCCCcEEEcCHHHHHHHH
Q 022475 120 GFFL--TVSPESIQMVAEHAAAKNKVFMMNLSAPFICEFFREPQEKALPYMDYVFGNETEARTFA 182 (296)
Q Consensus 120 g~~~--~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~dv~~~n~~E~~~l~ 182 (296)
...+ -++.+.+...++.-+ ..+++|+..|.. .-...-+..++...+.++++.+.
T Consensus 246 Tsa~~~ii~~~~ve~a~~~r~---~~livDiavPRd------ie~~v~~l~~v~l~~iDDL~~iv 301 (414)
T COG0373 246 TSAPHPIITREMVERALKIRK---RLLIVDIAVPRD------VEPEVGELPNVFLYTIDDLEEIV 301 (414)
T ss_pred cCCCccccCHHHHHHHHhccc---CeEEEEecCCCC------CCccccCcCCeEEEehhhHHHHH
Confidence 5332 234444444444322 168899877652 11223334567777888877664
No 128
>KOG0174 consensus 20S proteasome, regulatory subunit beta type PSMB6/PSMB9/PRE3 [Posttranslational modification, protein turnover, chaperones]
Probab=56.27 E-value=7.9 Score=30.70 Aligned_cols=42 Identities=31% Similarity=0.583 Sum_probs=35.7
Q ss_pred CCCchhhhHHHHHH-HhcCCCHHHHHHHhhHHhhhhhhhccCC
Q 022475 247 NGAGDAFVGGFLSQ-LVQEKPVEDCVRTGCYAANVVIQRSGCT 288 (296)
Q Consensus 247 tGaGDaf~ag~~~~-l~~~~~~~~a~~~A~~~aa~~~~~~G~~ 288 (296)
-|.|-+|+=||+-. +-.++++|||++|-..+-+.++.+-|++
T Consensus 147 gGSGStfIYGf~D~~~r~nMt~EE~~~fvk~Av~lAi~rDGsS 189 (224)
T KOG0174|consen 147 GGSGSTFIYGFCDANWRPNMTLEECVRFVKNAVSLAIERDGSS 189 (224)
T ss_pred ccCCceeeeeeehhhcCCCCCHHHHHHHHHHHHHHHHhccCCC
Confidence 68999999888865 4558999999999999999999888764
No 129
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=53.31 E-value=31 Score=28.48 Aligned_cols=52 Identities=15% Similarity=0.213 Sum_probs=37.7
Q ss_pred hcceEEEEeccccccChHHHHHHHHHHhhCCCE--EEEeCCchhhhhhhhHHHHhhcCCCcEEE
Q 022475 111 EKAKYYYIAGFFLTVSPESIQMVAEHAAAKNKV--FMMNLSAPFICEFFREPQEKALPYMDYVF 172 (296)
Q Consensus 111 ~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~--~~~d~~~~~~~~~~~~~~~~~l~~~dv~~ 172 (296)
..+|++.+.- +.. ....+.++..++.|++ +.++|..+. +.++.+++.+|.+.
T Consensus 84 ~gad~I~~H~---Ea~-~~~~~~l~~Ir~~g~k~GlalnP~T~~------~~i~~~l~~vD~Vl 137 (223)
T PRK08745 84 AGATTISFHP---EAS-RHVHRTIQLIKSHGCQAGLVLNPATPV------DILDWVLPELDLVL 137 (223)
T ss_pred hCCCEEEEcc---cCc-ccHHHHHHHHHHCCCceeEEeCCCCCH------HHHHHHHhhcCEEE
Confidence 3578887753 222 3356788889999976 788887654 66788899998776
No 130
>COG1159 Era GTPase [General function prediction only]
Probab=52.85 E-value=1.2e+02 Score=26.28 Aligned_cols=141 Identities=10% Similarity=0.056 Sum_probs=66.9
Q ss_pred CCcEEEEEeecCCchhH-HHHHHHHhcCCceeEEecCCCCceeEEEEEe-CCeeceeeccccccccCccccCC---hhhh
Q 022475 33 PGATSYIGCIGKDKFGE-EMKKNSTAAGVNVKYYEDESAPTGTCAVCVV-GGERSLVANLSAANCYKSEHLKR---PEIW 107 (296)
Q Consensus 33 g~~v~~~~~vG~D~~g~-~i~~~l~~~gi~~~~~~~~~~~t~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~---~~~~ 107 (296)
+..+.|++.+|+-..|. -+.+.|-...|... -...+.|+..+.-+. +++.+++....+.-+-....+.. ...+
T Consensus 3 ~~ksGfVaIiGrPNvGKSTLlN~l~G~KisIv--S~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~pk~~l~~~m~~~a~ 80 (298)
T COG1159 3 KFKSGFVAIIGRPNVGKSTLLNALVGQKISIV--SPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKPKHALGELMNKAAR 80 (298)
T ss_pred CceEEEEEEEcCCCCcHHHHHHHHhcCceEee--cCCcchhhhheeEEEEcCCceEEEEeCCCCCCcchHHHHHHHHHHH
Confidence 36789999999866665 46667755555432 222233433333333 44555444433332222222222 3455
Q ss_pred hhhhcceEEEEeccccccChHHHHHHHHHHhhC--CCEEEEeCCc---hhh-hhhhhHHHHhhcCCCcEEEcCH
Q 022475 108 SIVEKAKYYYIAGFFLTVSPESIQMVAEHAAAK--NKVFMMNLSA---PFI-CEFFREPQEKALPYMDYVFGNE 175 (296)
Q Consensus 108 ~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~--~~~~~~d~~~---~~~-~~~~~~~~~~~l~~~dv~~~n~ 175 (296)
+.+.++|++.+---...-....-+.+++..++. ...+.+|--. +.. -....+......++..++-.|.
T Consensus 81 ~sl~dvDlilfvvd~~~~~~~~d~~il~~lk~~~~pvil~iNKID~~~~~~~l~~~~~~~~~~~~f~~ivpiSA 154 (298)
T COG1159 81 SALKDVDLILFVVDADEGWGPGDEFILEQLKKTKTPVILVVNKIDKVKPKTVLLKLIAFLKKLLPFKEIVPISA 154 (298)
T ss_pred HHhccCcEEEEEEeccccCCccHHHHHHHHhhcCCCeEEEEEccccCCcHHHHHHHHHHHHhhCCcceEEEeec
Confidence 678889988764211111112223445555543 3334444211 111 0123344455566666665543
No 131
>TIGR02494 PFLE_PFLC glycyl-radical enzyme activating protein family. This subset of the radical-SAM family (pfam04055) includes a number of probable activating proteins acting on different enzymes all requiring an amino-acid-centered radical. The closest relatives to this family are the pyruvate-formate lyase activating enzyme (PflA, 1.97.1.4, TIGR02493) and the anaerobic ribonucleotide reductase activating enzyme (TIGR02491). Included within this subfamily are activators of hydroxyphenyl acetate decarboxylase (HdpA, ), benzylsuccinate synthase (BssD, ), gycerol dehydratase (DhaB2, ) as well as enzymes annotated in E. coli as activators of different isozymes of pyruvate-formate lyase (PFLC and PFLE) however, these appear to lack characterization and may activate enzymes with distinctive functions. Most of the sequence-level variability between these forms is concentrated within an N-terminal domain which follows a conserved group of three cysteines and contains a variable pattern of 0
Probab=52.60 E-value=77 Score=27.13 Aligned_cols=55 Identities=20% Similarity=0.150 Sum_probs=37.1
Q ss_pred eEEEEeccccccChHHHHHHHHHHhhCCCEEEEeCCchhhhhhhhHHHHhhcCCCcEEE
Q 022475 114 KYYYIAGFFLTVSPESIQMVAEHAAAKNKVFMMNLSAPFICEFFREPQEKALPYMDYVF 172 (296)
Q Consensus 114 ~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~dv~~ 172 (296)
..|.++|--+.+.++.+.++++.+++.|..+.++...... .+.+..+++..|++.
T Consensus 127 ~~V~~sGGEPll~~~~l~~l~~~~k~~g~~~~i~TnG~~~----~~~~~~ll~~~d~~~ 181 (295)
T TIGR02494 127 GGVTLSGGEPLLQPEFALALLQACHERGIHTAVETSGFTP----WETIEKVLPYVDLFL 181 (295)
T ss_pred CcEEeeCcchhchHHHHHHHHHHHHHcCCcEeeeCCCCCC----HHHHHHHHhhCCEEE
Confidence 4567776334566788889999999999888777654332 234555666677754
No 132
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=52.01 E-value=37 Score=28.16 Aligned_cols=52 Identities=10% Similarity=0.121 Sum_probs=37.4
Q ss_pred cceEEEEeccccccChHHHHHHHHHHhhCCCE--EEEeCCchhhhhhhhHHHHhhcCCCcEEE
Q 022475 112 KAKYYYIAGFFLTVSPESIQMVAEHAAAKNKV--FMMNLSAPFICEFFREPQEKALPYMDYVF 172 (296)
Q Consensus 112 ~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~--~~~d~~~~~~~~~~~~~~~~~l~~~dv~~ 172 (296)
.+|++.+.- +........+++.+++.|.+ +.++|..+. +.++.+++.+|.+.
T Consensus 82 Gad~it~H~---Ea~~~~~~~~i~~Ik~~G~kaGlalnP~T~~------~~l~~~l~~vD~VL 135 (229)
T PRK09722 82 GADFITLHP---ETINGQAFRLIDEIRRAGMKVGLVLNPETPV------ESIKYYIHLLDKIT 135 (229)
T ss_pred CCCEEEECc---cCCcchHHHHHHHHHHcCCCEEEEeCCCCCH------HHHHHHHHhcCEEE
Confidence 578887753 32223356788889999976 788887654 66888899998776
No 133
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=51.81 E-value=45 Score=27.60 Aligned_cols=51 Identities=24% Similarity=0.287 Sum_probs=38.6
Q ss_pred hcceEEEEeccccccChHHHHHHHHHHh-hCCCEEEEeCCchhhhhhhhHHHHhhcCCCcEEE
Q 022475 111 EKAKYYYIAGFFLTVSPESIQMVAEHAA-AKNKVFMMNLSAPFICEFFREPQEKALPYMDYVF 172 (296)
Q Consensus 111 ~~~~~~~i~g~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~dv~~ 172 (296)
...|.+.++|. .++..+.+.++++.++ +.+.|+++.|+++. .+.+++|.++
T Consensus 40 ~GTDaImIGGS-~gvt~~~~~~~v~~ik~~~~lPvilfP~~~~----------~is~~aDavf 91 (240)
T COG1646 40 AGTDAIMIGGS-DGVTEENVDNVVEAIKERTDLPVILFPGSPS----------GISPYADAVF 91 (240)
T ss_pred cCCCEEEECCc-ccccHHHHHHHHHHHHhhcCCCEEEecCChh----------ccCccCCeEE
Confidence 45899999884 3556677788888888 78899999998754 4566777665
No 134
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=51.69 E-value=1.2e+02 Score=25.76 Aligned_cols=35 Identities=9% Similarity=0.228 Sum_probs=27.7
Q ss_pred ccCCCCCchhhhHHHHHHHhc------CCCHHHHHHHhhHH
Q 022475 243 LVDTNGAGDAFVGGFLSQLVQ------EKPVEDCVRTGCYA 277 (296)
Q Consensus 243 vvd~tGaGDaf~ag~~~~l~~------~~~~~~a~~~A~~~ 277 (296)
..-.+|+|-+|.+-|+-++.. |.+-++|.+++...
T Consensus 168 ~tal~gsgPA~~~~~~~al~~a~~~~ggl~~~~a~~l~~~~ 208 (277)
T PRK06928 168 ASNLTSSSPGFIAAIFEEFAEAAVRNSSLSDEEAFQFLNFA 208 (277)
T ss_pred eeeeecCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 344589999999999988876 58888888777643
No 135
>PRK05968 hypothetical protein; Provisional
Probab=51.47 E-value=1.8e+02 Score=26.09 Aligned_cols=39 Identities=18% Similarity=0.196 Sum_probs=27.0
Q ss_pred hhcceEEEEeccc-cccChHHHHHHHHHHhhCCCEEEEeC
Q 022475 110 VEKAKYYYIAGFF-LTVSPESIQMVAEHAAAKNKVFMMNL 148 (296)
Q Consensus 110 ~~~~~~~~i~g~~-~~~~~~~~~~~~~~~~~~~~~~~~d~ 148 (296)
+.+.++++++..+ .......+.++.+.++++|+++++|-
T Consensus 145 i~~tklV~ie~pt~~~~~~~dl~~i~~la~~~gi~vivD~ 184 (389)
T PRK05968 145 LPGAKLLYLESPTSWVFELQDVAALAALAKRHGVVTMIDN 184 (389)
T ss_pred cccCCEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEEC
Confidence 3456778776433 22344677788888888898888886
No 136
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=51.45 E-value=80 Score=23.10 Aligned_cols=60 Identities=12% Similarity=0.074 Sum_probs=37.9
Q ss_pred hhhhcceEEEEeccccccChHHHHHHHHHHhhCCCEEEEeCCchhhhhhhhHHHHhhcCCCcEEE-cC
Q 022475 108 SIVEKAKYYYIAGFFLTVSPESIQMVAEHAAAKNKVFMMNLSAPFICEFFREPQEKALPYMDYVF-GN 174 (296)
Q Consensus 108 ~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~dv~~-~n 174 (296)
+.+.++|+++- ...|+.....++.+.+++++++.=.- -|.+...+.++++.+...++. +|
T Consensus 63 ~~~~~~DVvID-----fT~p~~~~~~~~~~~~~g~~~ViGTT--G~~~~~~~~l~~~a~~~~vl~a~N 123 (124)
T PF01113_consen 63 ELLEEADVVID-----FTNPDAVYDNLEYALKHGVPLVIGTT--GFSDEQIDELEELAKKIPVLIAPN 123 (124)
T ss_dssp HHTTH-SEEEE-----ES-HHHHHHHHHHHHHHT-EEEEE-S--SSHHHHHHHHHHHTTTSEEEE-SS
T ss_pred HhcccCCEEEE-----cCChHHhHHHHHHHHhCCCCEEEECC--CCCHHHHHHHHHHhccCCEEEeCC
Confidence 45566886543 23678888899999999999776442 244444566777777777776 54
No 137
>PRK05939 hypothetical protein; Provisional
Probab=51.38 E-value=1.7e+02 Score=26.45 Aligned_cols=38 Identities=0% Similarity=0.148 Sum_probs=25.9
Q ss_pred cceEEEEeccc-cccChHHHHHHHHHHhhCCCEEEEeCC
Q 022475 112 KAKYYYIAGFF-LTVSPESIQMVAEHAAAKNKVFMMNLS 149 (296)
Q Consensus 112 ~~~~~~i~g~~-~~~~~~~~~~~~~~~~~~~~~~~~d~~ 149 (296)
+.++++++... +.....-+..+.+.|+++|+.+++|-.
T Consensus 131 ~tklV~vesp~NptG~v~dl~~I~~la~~~gi~livD~t 169 (397)
T PRK05939 131 NTRMVFVETIANPGTQVADLAGIGALCRERGLLYVVDNT 169 (397)
T ss_pred CCeEEEEECCCCCCCCHHhHHHHHHHHHHcCCEEEEECC
Confidence 46778776432 222234567888889999999888863
No 138
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=50.98 E-value=1.4e+02 Score=25.37 Aligned_cols=36 Identities=17% Similarity=0.318 Sum_probs=28.5
Q ss_pred ccCCCCCchhhhHHHHHHHhc-----CCCHHHHHHHhhHHh
Q 022475 243 LVDTNGAGDAFVGGFLSQLVQ-----EKPVEDCVRTGCYAA 278 (296)
Q Consensus 243 vvd~tGaGDaf~ag~~~~l~~-----~~~~~~a~~~A~~~a 278 (296)
...-+|||-+|..-|+-++.. |.+-++|.+++....
T Consensus 168 ~talsgsgPAf~~~~~eal~~a~v~~Gl~~~~A~~l~~~t~ 208 (272)
T PRK12491 168 VTSISGSSPAYVYMFIEAMADAAVLGGMPRKQAYKFAAQAV 208 (272)
T ss_pred HHHhccCcHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 345589999999999988854 789888888876543
No 139
>PF10649 DUF2478: Protein of unknown function (DUF2478); InterPro: IPR018912 This is a family of hypothetical bacterial proteins encoded in the vicinity of molybdenum ABC transporter gene-products MobA, MobB and MobC. However the function could not be confirmed.
Probab=50.12 E-value=1.1e+02 Score=23.75 Aligned_cols=102 Identities=13% Similarity=0.090 Sum_probs=55.9
Q ss_pred HHHHHHHHhcCCceeEEecC---CCCc---eeEEEEEeCCeec-eeecccc---ccccCccccCC--hhhhhhh-hcceE
Q 022475 49 EEMKKNSTAAGVNVKYYEDE---SAPT---GTCAVCVVGGERS-LVANLSA---ANCYKSEHLKR--PEIWSIV-EKAKY 115 (296)
Q Consensus 49 ~~i~~~l~~~gi~~~~~~~~---~~~t---~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~~~~--~~~~~~~-~~~~~ 115 (296)
..+.+.|+..|+.+-.+... .... ...+..+.+|.+. +..+.++ ...+++..+.. ......+ ..+|+
T Consensus 17 ~~~a~~L~~~G~rv~G~vQ~~~~~~~~~~~~m~l~dl~~G~~~~IsQ~LG~gs~gCrLD~~~La~A~~~l~~al~~~~DL 96 (159)
T PF10649_consen 17 AAFAARLRARGVRVAGLVQRNTADGDGGRCDMDLRDLPSGRRIRISQDLGPGSRGCRLDPGALAEASAALRRALAEGADL 96 (159)
T ss_pred HHHHHHHHhCCCeEEEEeccccCCCCCCccceEEEECCCCCEEEEeeccCCCCcccccCHHHHHHHHHHHHHHHhcCCCE
Confidence 34456778899999887422 2222 2333333355553 3344332 23566655544 2233334 44899
Q ss_pred EEEecccc-ccChHHHHHHHHHHhhCCCEEEEeCCc
Q 022475 116 YYIAGFFL-TVSPESIQMVAEHAAAKNKVFMMNLSA 150 (296)
Q Consensus 116 ~~i~g~~~-~~~~~~~~~~~~~~~~~~~~~~~d~~~ 150 (296)
++++-|.. +....-+...+..+-..|+|+..-...
T Consensus 97 livNkFGk~Ea~G~Glr~~i~~A~~~giPVLt~V~~ 132 (159)
T PF10649_consen 97 LIVNKFGKQEAEGRGLRDEIAAALAAGIPVLTAVPP 132 (159)
T ss_pred EEEcccHHhhhcCCCHHHHHHHHHHCCCCEEEEECH
Confidence 99986652 223333455666677788887766643
No 140
>PRK08005 epimerase; Validated
Probab=50.02 E-value=37 Score=27.72 Aligned_cols=51 Identities=12% Similarity=0.200 Sum_probs=36.7
Q ss_pred cceEEEEeccccccChHHHHHHHHHHhhCCCE--EEEeCCchhhhhhhhHHHHhhcCCCcEEE
Q 022475 112 KAKYYYIAGFFLTVSPESIQMVAEHAAAKNKV--FMMNLSAPFICEFFREPQEKALPYMDYVF 172 (296)
Q Consensus 112 ~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~--~~~d~~~~~~~~~~~~~~~~~l~~~dv~~ 172 (296)
.+|++.+.- +.. ....++++..++.|.+ +.++|..+. +.++.+++.+|.+.
T Consensus 81 gad~It~H~---Ea~-~~~~~~l~~Ik~~G~k~GlAlnP~Tp~------~~i~~~l~~vD~Vl 133 (210)
T PRK08005 81 RPGWIFIHA---ESV-QNPSEILADIRAIGAKAGLALNPATPL------LPYRYLALQLDALM 133 (210)
T ss_pred CCCEEEEcc---cCc-cCHHHHHHHHHHcCCcEEEEECCCCCH------HHHHHHHHhcCEEE
Confidence 568887753 222 2356788889999976 788887654 66778888888776
No 141
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=49.99 E-value=34 Score=27.68 Aligned_cols=51 Identities=20% Similarity=0.208 Sum_probs=34.7
Q ss_pred cceEEEEeccccccChHHHHHHHHHHhhCCCE--EEEeCCchhhhhhhhHHHHhhcCCCcEEE
Q 022475 112 KAKYYYIAGFFLTVSPESIQMVAEHAAAKNKV--FMMNLSAPFICEFFREPQEKALPYMDYVF 172 (296)
Q Consensus 112 ~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~--~~~d~~~~~~~~~~~~~~~~~l~~~dv~~ 172 (296)
.++.+.+.- + ..+...++++..++.|++ +.++|..+. +.++++++..|.+.
T Consensus 80 g~~~i~~H~---E-~~~~~~~~i~~ik~~g~k~GialnP~T~~------~~~~~~l~~vD~Vl 132 (201)
T PF00834_consen 80 GADYITFHA---E-ATEDPKETIKYIKEAGIKAGIALNPETPV------EELEPYLDQVDMVL 132 (201)
T ss_dssp T-SEEEEEG---G-GTTTHHHHHHHHHHTTSEEEEEE-TTS-G------GGGTTTGCCSSEEE
T ss_pred CCCEEEEcc---c-chhCHHHHHHHHHHhCCCEEEEEECCCCc------hHHHHHhhhcCEEE
Confidence 467777753 3 223456788889999987 788886654 55778899999886
No 142
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=49.29 E-value=38 Score=27.82 Aligned_cols=52 Identities=12% Similarity=0.148 Sum_probs=37.7
Q ss_pred hcceEEEEeccccccChHHHHHHHHHHhhCCCE--EEEeCCchhhhhhhhHHHHhhcCCCcEEE
Q 022475 111 EKAKYYYIAGFFLTVSPESIQMVAEHAAAKNKV--FMMNLSAPFICEFFREPQEKALPYMDYVF 172 (296)
Q Consensus 111 ~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~--~~~d~~~~~~~~~~~~~~~~~l~~~dv~~ 172 (296)
..+|++.+.- +. ...+.++++..++.|++ +.++|..+. +.++.+++..|.+.
T Consensus 80 ~gad~i~~H~---Ea-~~~~~~~l~~ik~~g~k~GlalnP~Tp~------~~i~~~l~~~D~vl 133 (220)
T PRK08883 80 AGASMITFHV---EA-SEHVDRTLQLIKEHGCQAGVVLNPATPL------HHLEYIMDKVDLIL 133 (220)
T ss_pred hCCCEEEEcc---cC-cccHHHHHHHHHHcCCcEEEEeCCCCCH------HHHHHHHHhCCeEE
Confidence 3578887753 22 23456788889999976 788887655 66788899988776
No 143
>TIGR02826 RNR_activ_nrdG3 anaerobic ribonucleoside-triphosphate reductase activating protein. Members of this family represent a set of proteins related to, yet architecturally different from, the activating protein for the glycine radical-containing, oxygen-sensitive ribonucleoside-triphosphate reductase (RNR) as described in model TIGR02491. Members of this family are found paired with members of a similarly divergent set of anaerobic ribonucleoside-triphosphate reductases. Identification of this protein as an RNR activitating protein is partly from pairing with a candidate RNR. It is further supported by our finding that upstream of these operons are examples of a conserved regulatory element (described Rodionov and Gelfand) that is found in nearly all bacteria and that occurs specifically upstream of operons for all three classes of RNR genes.
Probab=48.57 E-value=84 Score=23.96 Aligned_cols=57 Identities=9% Similarity=-0.039 Sum_probs=40.7
Q ss_pred eEEEEeccccccChHHHHHHHHHHhhCCCEEEEeCCchhhhhhhhHHHHhhcCCCcEEEcCHHH
Q 022475 114 KYYYIAGFFLTVSPESIQMVAEHAAAKNKVFMMNLSAPFICEFFREPQEKALPYMDYVFGNETE 177 (296)
Q Consensus 114 ~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~dv~~~n~~E 177 (296)
+.|.++|-- ...+.+.++++.+++.|.++.++..... .+..++++++.|+++...-+
T Consensus 63 ~gVt~SGGE--l~~~~l~~ll~~lk~~Gl~i~l~Tg~~~-----~~~~~~il~~iD~l~~g~y~ 119 (147)
T TIGR02826 63 SCVLFLGGE--WNREALLSLLKIFKEKGLKTCLYTGLEP-----KDIPLELVQHLDYLKTGRWI 119 (147)
T ss_pred CEEEEechh--cCHHHHHHHHHHHHHCCCCEEEECCCCC-----HHHHHHHHHhCCEEEEChHH
Confidence 467777643 4567788899999999998888764322 23456778899999976643
No 144
>PLN02383 aspartate semialdehyde dehydrogenase
Probab=47.92 E-value=2e+02 Score=25.49 Aligned_cols=94 Identities=16% Similarity=0.215 Sum_probs=50.5
Q ss_pred CcEEEEEeecCCchhHHHHHHHHhcCCceeEEe--cCCCCceeEEEEEeCCeeceeeccccccccCccccCChhhhhhhh
Q 022475 34 GATSYIGCIGKDKFGEEMKKNSTAAGVNVKYYE--DESAPTGTCAVCVVGGERSLVANLSAANCYKSEHLKRPEIWSIVE 111 (296)
Q Consensus 34 ~~v~~~~~vG~D~~g~~i~~~l~~~gi~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (296)
.++..+|.-|. .|..+.+.|.+.+.....+. ...+..+..+.. .+ ..+..+.+.. +.+.
T Consensus 8 ~kVaVvGAtG~--vG~eLlrlL~~~~hP~~~l~~las~rsaGk~~~~--~~-----------~~~~v~~~~~----~~~~ 68 (344)
T PLN02383 8 PSVAIVGVTGA--VGQEFLSVLTDRDFPYSSLKMLASARSAGKKVTF--EG-----------RDYTVEELTE----DSFD 68 (344)
T ss_pred CeEEEEcCCCh--HHHHHHHHHHhCCCCcceEEEEEccCCCCCeeee--cC-----------ceeEEEeCCH----HHHc
Confidence 66777776554 69999999987554322221 122222222211 11 1122222222 2346
Q ss_pred cceEEEEeccccccChHHHHHHHHHHhhCCCEEEEeCCchh
Q 022475 112 KAKYYYIAGFFLTVSPESIQMVAEHAAAKNKVFMMNLSAPF 152 (296)
Q Consensus 112 ~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 152 (296)
+.|++++. .+.+...++...+.+.|++ ++|.++.+
T Consensus 69 ~~D~vf~a-----~p~~~s~~~~~~~~~~g~~-VIDlS~~f 103 (344)
T PLN02383 69 GVDIALFS-----AGGSISKKFGPIAVDKGAV-VVDNSSAF 103 (344)
T ss_pred CCCEEEEC-----CCcHHHHHHHHHHHhCCCE-EEECCchh
Confidence 78999884 3556667777777677765 55766544
No 145
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=47.71 E-value=59 Score=26.45 Aligned_cols=49 Identities=14% Similarity=0.165 Sum_probs=37.8
Q ss_pred ceEEEEeccccccChHHHHHHHHHHhh-CCCEEEEeCCchhhhhhhhHHHHhhcCCCcEEE
Q 022475 113 AKYYYIAGFFLTVSPESIQMVAEHAAA-KNKVFMMNLSAPFICEFFREPQEKALPYMDYVF 172 (296)
Q Consensus 113 ~~~~~i~g~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~l~~~dv~~ 172 (296)
.|.+.++|. .++..+.+.++++.+|+ ..+|+++.++... .+-+.+|.++
T Consensus 25 tDaI~VGGS-~gvt~~~~~~~v~~ik~~~~lPvilfp~~~~----------~i~~~aD~~~ 74 (205)
T TIGR01769 25 TDAIMVGGS-LGIVESNLDQTVKKIKKITNLPVILFPGNVN----------GLSRYADAVF 74 (205)
T ss_pred CCEEEEcCc-CCCCHHHHHHHHHHHHhhcCCCEEEECCCcc----------ccCcCCCEEE
Confidence 699999885 45677888888888888 4688988887654 4667788775
No 146
>PRK08114 cystathionine beta-lyase; Provisional
Probab=47.48 E-value=1.3e+02 Score=27.24 Aligned_cols=54 Identities=9% Similarity=0.145 Sum_probs=32.3
Q ss_pred cCCCceeecCChhHHHHHHHHHhhcCCCcEEEEEeecCCchh---HHHHHHHHhcCCceeEE
Q 022475 7 SKENVEYIAGGATQNSIKVAQWMLQIPGATSYIGCIGKDKFG---EEMKKNSTAAGVNVKYY 65 (296)
Q Consensus 7 ~~~~~~~~~GG~~~n~a~~~~~l~~lg~~v~~~~~vG~D~~g---~~i~~~l~~~gi~~~~~ 65 (296)
.....-..++|.+...+..++ +++.|..+. ++ ++.++ ..+.+.+++.||++.++
T Consensus 76 g~~~a~~~~SGmaAi~~~~~~-ll~~GD~Vv-~~---~~~Yg~t~~l~~~~l~~~Gi~v~~v 132 (395)
T PRK08114 76 GGAGCALYPCGAAAVANAILA-FVEQGDHVL-MT---GTAYEPTQDFCSKILSKLGVTTTWF 132 (395)
T ss_pred CCCeEEEEhHHHHHHHHHHHH-HcCCCCEEE-Ee---CCCcHHHHHHHHHHHHhcCcEEEEE
Confidence 344455677788888776666 466566543 32 23333 33345678888887765
No 147
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=47.17 E-value=50 Score=27.37 Aligned_cols=51 Identities=14% Similarity=0.173 Sum_probs=36.9
Q ss_pred cceEEEEeccccccChHHHHHHHHHHhhCCC--E--EEEeCCchhhhhhhhHHHHhhcCCCcEEE
Q 022475 112 KAKYYYIAGFFLTVSPESIQMVAEHAAAKNK--V--FMMNLSAPFICEFFREPQEKALPYMDYVF 172 (296)
Q Consensus 112 ~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~--~--~~~d~~~~~~~~~~~~~~~~~l~~~dv~~ 172 (296)
.+|++.+.- +.. ....+.++..++.|. + +.++|..+. +.++++++.+|.+.
T Consensus 91 Gad~It~H~---Ea~-~~~~~~l~~Ik~~g~~~kaGlalnP~Tp~------~~i~~~l~~vD~VL 145 (228)
T PRK08091 91 GADIVTLQV---EQT-HDLALTIEWLAKQKTTVLIGLCLCPETPI------SLLEPYLDQIDLIQ 145 (228)
T ss_pred CCCEEEEcc---cCc-ccHHHHHHHHHHCCCCceEEEEECCCCCH------HHHHHHHhhcCEEE
Confidence 578887753 222 235678888899987 5 788987665 66788898898776
No 148
>TIGR00112 proC pyrroline-5-carboxylate reductase. This enzyme catalyzes the final step in proline biosynthesis. Among the four paralogs in Bacillus subtilis (proG, proH, proI, and comER), ComER is the most divergent and does not prevent proline auxotrophy from mutation of the other three. It is excluded from the seed and scores between the trusted and noise cutoffs.
Probab=45.92 E-value=1.8e+02 Score=24.26 Aligned_cols=36 Identities=25% Similarity=0.321 Sum_probs=27.8
Q ss_pred ccCCCCCchhhhHHHHHHH-----hcCCCHHHHHHHhhHHh
Q 022475 243 LVDTNGAGDAFVGGFLSQL-----VQEKPVEDCVRTGCYAA 278 (296)
Q Consensus 243 vvd~tGaGDaf~ag~~~~l-----~~~~~~~~a~~~A~~~a 278 (296)
....+|||-+|..-|+-++ ..|.+.++|.+++..+.
T Consensus 148 ~talsgsgPA~~~~~~~al~~~~v~~Gl~~~~A~~lv~~~~ 188 (245)
T TIGR00112 148 VTALSGSGPAYVFLFIEALADAGVKQGLPRELALELAAQTV 188 (245)
T ss_pred HHhhccCcHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 3455899999999999666 45889888887776543
No 149
>PRK07810 O-succinylhomoserine sulfhydrylase; Provisional
Probab=45.14 E-value=2.4e+02 Score=25.56 Aligned_cols=38 Identities=16% Similarity=0.043 Sum_probs=22.7
Q ss_pred cceEEEEeccc-cccChHHHHHHHHHHhhCCCEEEEeCC
Q 022475 112 KAKYYYIAGFF-LTVSPESIQMVAEHAAAKNKVFMMNLS 149 (296)
Q Consensus 112 ~~~~~~i~g~~-~~~~~~~~~~~~~~~~~~~~~~~~d~~ 149 (296)
+.++++++... +....--+..+.+.++++++.+++|-.
T Consensus 155 ~tklV~~esp~Nptg~v~dl~~I~~la~~~g~~vivD~a 193 (403)
T PRK07810 155 PTQAVFFETPSNPMQSLVDIAAVSELAHAAGAKVVLDNV 193 (403)
T ss_pred CceEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECC
Confidence 45677765322 211122356777778888888887753
No 150
>KOG0256 consensus 1-aminocyclopropane-1-carboxylate synthase, and related proteins [Signal transduction mechanisms]
Probab=44.74 E-value=92 Score=28.24 Aligned_cols=23 Identities=26% Similarity=0.371 Sum_probs=18.3
Q ss_pred cChHHHHHHHHHHhhCCCEEEEe
Q 022475 125 VSPESIQMVAEHAAAKNKVFMMN 147 (296)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~d 147 (296)
.+++.+..+++-++++++.++.|
T Consensus 243 ~~~e~L~~ll~Fa~~kniHvI~D 265 (471)
T KOG0256|consen 243 LSPEELISLLNFASRKNIHVISD 265 (471)
T ss_pred cCHHHHHHHHHHHhhcceEEEee
Confidence 46788888888888888887766
No 151
>COG2876 AroA 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism]
Probab=44.70 E-value=20 Score=30.21 Aligned_cols=87 Identities=11% Similarity=0.054 Sum_probs=50.4
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCchhhhhhhhHHHHhhcCCCcEEEcCH---HHHHHHHHHc------------CCCCCCH
Q 022475 128 ESIQMVAEHAAAKNKVFMMNLSAPFICEFFREPQEKALPYMDYVFGNE---TEARTFAKVH------------GWETDNV 192 (296)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~dv~~~n~---~E~~~l~~~~------------~~~~~~~ 192 (296)
+-+..+.+.+.+.|.+++.....+. .++.+..++|++-+.. ..+..|-..- ..+.+++
T Consensus 96 ~gL~~l~~a~~~~Gl~vvtEvm~~~-------~~e~~~~y~DilqvGARNMQNF~LLke~G~~~kPvLLKRg~~aTieEw 168 (286)
T COG2876 96 EGLKLLKRAADETGLPVVTEVMDVR-------DVEAAAEYADILQVGARNMQNFALLKEVGRQNKPVLLKRGLSATIEEW 168 (286)
T ss_pred HHHHHHHHHHHHcCCeeEEEecCHH-------HHHHHHhhhhHHHhcccchhhhHHHHHhcccCCCeEEecCccccHHHH
Confidence 5556666677778998887775543 3667788899997533 3333333211 1112344
Q ss_pred HHHHHHHhcCCCCCCCCceEEEEeeCCCcEEEEECCe
Q 022475 193 EEIALKISQWPKASGTHKRITVITQGADPVVVAEDGK 229 (296)
Q Consensus 193 ~~~~~~l~~~~~~~~~g~~~vvvt~G~~G~~~~~~~~ 229 (296)
-.+++++. ..|...||+ .+.|...++...
T Consensus 169 L~AAEYI~------s~GN~~vIL--CERGIRtfe~~T 197 (286)
T COG2876 169 LNAAEYIL------SHGNGNVIL--CERGIRTFEKAT 197 (286)
T ss_pred HHHHHHHH------hCCCCcEEE--Eecccccccccc
Confidence 45666663 455555553 466776665544
No 152
>PRK03692 putative UDP-N-acetyl-D-mannosaminuronic acid transferase; Provisional
Probab=44.22 E-value=80 Score=26.44 Aligned_cols=67 Identities=12% Similarity=0.202 Sum_probs=40.8
Q ss_pred hhhhhhhhcceEEEEeccccc---------c------ChHHHHHHHHHHhhCCCEEEEeCCchhhhhhhhHHHHhhcCCC
Q 022475 104 PEIWSIVEKAKYYYIAGFFLT---------V------SPESIQMVAEHAAAKNKVFMMNLSAPFICEFFREPQEKALPYM 168 (296)
Q Consensus 104 ~~~~~~~~~~~~~~i~g~~~~---------~------~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~ 168 (296)
+++.+.+.++|+++.+|..+. . ..+.+..+++.+.+++.++.+=-+.+...+...+.++.-. ..
T Consensus 53 ~~~~~~l~~ad~i~~DG~gvv~~~~~~~~~~~~~Rv~G~dl~~~ll~~~~~~~~~v~llG~~~~v~~~a~~~l~~~y-~l 131 (243)
T PRK03692 53 AELRELINAAEYKYADGISVVRSIRKKYPQAQVSRVAGADLWEALMARAGKEGTPVFLVGGKPEVLAQTEAKLRTQW-NV 131 (243)
T ss_pred HHHHHHHHhCCEEecCCHHHHHHHHHhcCCCCCCeeChHHHHHHHHHHHHhcCCeEEEECCCHHHHHHHHHHHHHHh-CC
Confidence 445667888999999885211 0 1256778888888888776665555554444444444433 34
Q ss_pred cEE
Q 022475 169 DYV 171 (296)
Q Consensus 169 dv~ 171 (296)
+++
T Consensus 132 ~i~ 134 (243)
T PRK03692 132 NIV 134 (243)
T ss_pred EEE
Confidence 443
No 153
>COG4588 AcfC Accessory colonization factor AcfC, contains ABC-type periplasmic domain [General function prediction only]
Probab=43.96 E-value=1.8e+02 Score=23.77 Aligned_cols=66 Identities=17% Similarity=0.078 Sum_probs=43.7
Q ss_pred hhcceEEEEeccccccChHHHHHHHH-HHhhCCCEEEEeCCchhhhhhhhHHHHhhcCCCcEEE-cCHHHHHHHHHH
Q 022475 110 VEKAKYYYIAGFFLTVSPESIQMVAE-HAAAKNKVFMMNLSAPFICEFFREPQEKALPYMDYVF-GNETEARTFAKV 184 (296)
Q Consensus 110 ~~~~~~~~i~g~~~~~~~~~~~~~~~-~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~dv~~-~n~~E~~~l~~~ 184 (296)
...+|+..-. ++.+...+.++.. ..++.|.+|.+..++.. .+.+..-+.+|+++ .|+.-+..+...
T Consensus 18 ~~~adinlYG---pGGPhtaL~~vA~~~~ektg~kVnvt~GPq~------tW~~kAkknADilfgaseqsalaia~~ 85 (252)
T COG4588 18 AANADINLYG---PGGPHTALKDVAKKYEEKTGIKVNVTAGPQA------TWNEKAKKNADILFGASEQSALAIAED 85 (252)
T ss_pred hhcceEEEec---CCCCcHHHHHHHHHHHHHhCeEEEEecCCcc------hhhhhhhccCceeecccHHHHHHHHHh
Confidence 3456666554 3555556666554 44667888888886543 55777778899999 677777766654
No 154
>COG1058 CinA Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]
Probab=43.66 E-value=56 Score=27.57 Aligned_cols=36 Identities=11% Similarity=0.151 Sum_probs=26.3
Q ss_pred HHHHHHHHHhhcCCCcEEEEEeecCCchhHHHHHHHHh
Q 022475 20 QNSIKVAQWMLQIPGATSYIGCIGKDKFGEEMKKNSTA 57 (296)
Q Consensus 20 ~n~a~~~~~l~~lg~~v~~~~~vG~D~~g~~i~~~l~~ 57 (296)
.|.+..+..|..+|+++..+..||+| -+.|.+.++.
T Consensus 21 tNa~~la~~L~~~G~~v~~~~~VgD~--~~~I~~~l~~ 56 (255)
T COG1058 21 TNAAFLADELTELGVDLARITTVGDN--PDRIVEALRE 56 (255)
T ss_pred chHHHHHHHHHhcCceEEEEEecCCC--HHHHHHHHHH
Confidence 46777777777788999999999988 4445555554
No 155
>PF04230 PS_pyruv_trans: Polysaccharide pyruvyl transferase; InterPro: IPR007345 Pyruvyl-transferases are involved in peptidoglycan-associated polymer biosynthesis. CsaB in Bacillus anthracis is necessary for the non-covalent anchoring of proteins containing an SLH (S-layer homology) domain to peptidoglycan-associated pyruvylated polysaccharides. WcaK and AmsJ are involved in the biosynthesis of colanic acid in Escherichia coli and of amylovoran in Erwinia amylovora [, ].
Probab=43.66 E-value=1.2e+02 Score=24.79 Aligned_cols=52 Identities=17% Similarity=0.119 Sum_probs=34.1
Q ss_pred HHHHHHHhhCCCEEEEeC-Cc-hhhhhhhhHHHHhhcCCCcEEEcCHHHHHHHH
Q 022475 131 QMVAEHAAAKNKVFMMNL-SA-PFICEFFREPQEKALPYMDYVFGNETEARTFA 182 (296)
Q Consensus 131 ~~~~~~~~~~~~~~~~d~-~~-~~~~~~~~~~~~~~l~~~dv~~~n~~E~~~l~ 182 (296)
......++..++++++-. +. +...+..++.++.+++.++.+.+-++....+.
T Consensus 89 ~~~~~~~~~~~~pv~~~g~g~gp~~~~~~~~~~~~~l~~~~~i~vRD~~S~~~l 142 (286)
T PF04230_consen 89 LRWLFLAKKLGKPVIILGQGIGPFRSEEFKKLLRRILSKADYISVRDEYSYELL 142 (286)
T ss_pred HHHHHHHHhcCCCeEEECceECccCCHHHHHHHHHHHhCCCEEEECCHHHHHHH
Confidence 455666777888754443 32 23344567778889999999988766654433
No 156
>PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=43.31 E-value=1.9e+02 Score=26.57 Aligned_cols=37 Identities=19% Similarity=0.195 Sum_probs=23.6
Q ss_pred ceEEEEeccc-cccChHHHHHHHHHHhhCCCEEEEeCC
Q 022475 113 AKYYYIAGFF-LTVSPESIQMVAEHAAAKNKVFMMNLS 149 (296)
Q Consensus 113 ~~~~~i~g~~-~~~~~~~~~~~~~~~~~~~~~~~~d~~ 149 (296)
.+++++.... ......-+..+.+.++++|+++++|-.
T Consensus 156 tk~V~~e~~~Np~~~v~di~~I~~la~~~gi~livD~t 193 (437)
T PRK05613 156 TKAFFGETFANPQADVLDIPAVAEVAHRNQVPLIVDNT 193 (437)
T ss_pred CeEEEEECCCCCCCcccCHHHHHHHHHHcCCeEEEECC
Confidence 4566665332 111123467788888899999999975
No 157
>TIGR02493 PFLA pyruvate formate-lyase 1-activating enzyme. An iron-sulfur protein with a radical-SAM domain (pfam04055). A single glycine residue in EC 2.3.1.54, formate C-acetyltransferase (formate-pyruvate lyase), is oxidized to the corresponding radical by transfer of H from its CH2 to AdoMet with concomitant cleavage of the latter. The reaction requires Fe2+. The first stage is reduction of the AdoMet to give methionine and the 5'-deoxyadenosin-5-yl radical, which then abstracts a hydrogen radical from the glycine residue.
Probab=42.76 E-value=1.3e+02 Score=24.66 Aligned_cols=59 Identities=15% Similarity=0.055 Sum_probs=36.9
Q ss_pred eEEEEeccccccChHHHHHHHHHHhhCCCEEEEeCCchhhhhhhhHHHHhhcCCCcEEEcC
Q 022475 114 KYYYIAGFFLTVSPESIQMVAEHAAAKNKVFMMNLSAPFICEFFREPQEKALPYMDYVFGN 174 (296)
Q Consensus 114 ~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~dv~~~n 174 (296)
+.+.++|--+.+.++.+..+++.+++.|..+.+....... ...+.+..+++..|.+.++
T Consensus 67 ~~I~~~GGEPll~~~~~~~li~~~~~~g~~~~i~TNG~~~--~~~~~~~~ll~~~d~v~is 125 (235)
T TIGR02493 67 GGVTFSGGEPLLQPEFLSELFKACKELGIHTCLDTSGFLG--GCTEAADELLEYTDLVLLD 125 (235)
T ss_pred CeEEEeCcccccCHHHHHHHHHHHHHCCCCEEEEcCCCCC--ccHHHHHHHHHhCCEEEEe
Confidence 4577776445567788889999999999877776544211 0123344555666766544
No 158
>cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis. This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life.
Probab=42.66 E-value=2e+02 Score=25.47 Aligned_cols=38 Identities=18% Similarity=0.267 Sum_probs=23.7
Q ss_pred cceEEEEeccc-cccChHHHHHHHHHHhhCCCEEEEeCC
Q 022475 112 KAKYYYIAGFF-LTVSPESIQMVAEHAAAKNKVFMMNLS 149 (296)
Q Consensus 112 ~~~~~~i~g~~-~~~~~~~~~~~~~~~~~~~~~~~~d~~ 149 (296)
+.++++++... +.....-+.++.+.+++.|+.+++|-.
T Consensus 125 ~~~~v~~e~~~np~g~~~dl~~i~~la~~~g~~livD~t 163 (369)
T cd00614 125 ETKLVYVESPTNPTLKVVDIEAIAELAHEHGALLVVDNT 163 (369)
T ss_pred CCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECC
Confidence 46777776432 111112356778888888888888863
No 159
>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.
Probab=42.59 E-value=2.4e+02 Score=24.89 Aligned_cols=37 Identities=14% Similarity=0.147 Sum_probs=25.0
Q ss_pred hhcceEEEEeccccccChHHHHHHHHHHhhCCCEEEEeCCchh
Q 022475 110 VEKAKYYYIAGFFLTVSPESIQMVAEHAAAKNKVFMMNLSAPF 152 (296)
Q Consensus 110 ~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 152 (296)
+...|+++++. +.....++...+.+.|+ .++|.++.+
T Consensus 59 ~~~~D~v~~a~-----g~~~s~~~a~~~~~~G~-~VID~ss~~ 95 (339)
T TIGR01296 59 FEGIDIALFSA-----GGSVSKEFAPKAAKCGA-IVIDNTSAF 95 (339)
T ss_pred hcCCCEEEECC-----CHHHHHHHHHHHHHCCC-EEEECCHHH
Confidence 46789998853 44566666776767787 477776544
No 160
>TIGR01325 O_suc_HS_sulf O-succinylhomoserine sulfhydrylase. This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis.
Probab=42.25 E-value=2.5e+02 Score=25.06 Aligned_cols=38 Identities=16% Similarity=0.087 Sum_probs=22.9
Q ss_pred cceEEEEeccc-cccChHHHHHHHHHHhhCCCEEEEeCC
Q 022475 112 KAKYYYIAGFF-LTVSPESIQMVAEHAAAKNKVFMMNLS 149 (296)
Q Consensus 112 ~~~~~~i~g~~-~~~~~~~~~~~~~~~~~~~~~~~~d~~ 149 (296)
+.++++++..+ +......+.++.+.+++.|+.+++|-.
T Consensus 139 ~tklV~le~p~np~g~~~dl~~I~~la~~~gi~livD~a 177 (380)
T TIGR01325 139 NTKLVFVETPSNPLGELVDIAALAELAHAIGALLVVDNV 177 (380)
T ss_pred CceEEEEECCCCCCCeeeCHHHHHHHHHHcCCEEEEECC
Confidence 45677765432 111122356777777888888888864
No 161
>PF04016 DUF364: Domain of unknown function (DUF364); InterPro: IPR007161 This is a entry represents of bacterial and archaeal proteins of unknown function.; PDB: 3L5O_B 3NPG_A.
Probab=41.86 E-value=46 Score=25.37 Aligned_cols=44 Identities=27% Similarity=0.260 Sum_probs=31.7
Q ss_pred hhhhhcceEEEEeccccccChHHHHHHHHHHhhCCCEEEEeCCchh
Q 022475 107 WSIVEKAKYYYIAGFFLTVSPESIQMVAEHAAAKNKVFMMNLSAPF 152 (296)
Q Consensus 107 ~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 152 (296)
.+.+.++|+++++|.++ -...+..+++.+++....+++=++.+.
T Consensus 57 ~~~l~~aD~viiTGsTl--vN~Ti~~iL~~~~~~~~vil~GpS~~~ 100 (147)
T PF04016_consen 57 EEILPWADVVIITGSTL--VNGTIDDILELARNAREVILYGPSAPL 100 (147)
T ss_dssp HHHGGG-SEEEEECHHC--CTTTHHHHHHHTTTSSEEEEESCCGGS
T ss_pred HHHHccCCEEEEEeeee--ecCCHHHHHHhCccCCeEEEEecCchh
Confidence 35688999999999764 346778899988855556777776655
No 162
>PRK04296 thymidine kinase; Provisional
Probab=41.82 E-value=72 Score=25.36 Aligned_cols=60 Identities=15% Similarity=-0.065 Sum_probs=37.4
Q ss_pred cceEEEEeccccccChHHHHHHHHHHhhCCCEEEEeCCchhhhhhhhHHHHhhcCCCcEEE
Q 022475 112 KAKYYYIAGFFLTVSPESIQMVAEHAAAKNKVFMMNLSAPFICEFFREPQEKALPYMDYVF 172 (296)
Q Consensus 112 ~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~dv~~ 172 (296)
+.|+++++.... ++.+.+.++++.++..|+.+++--...............+++.+|.+.
T Consensus 78 ~~dvviIDEaq~-l~~~~v~~l~~~l~~~g~~vi~tgl~~~~~~~~f~~~~~L~~~aD~V~ 137 (190)
T PRK04296 78 KIDCVLIDEAQF-LDKEQVVQLAEVLDDLGIPVICYGLDTDFRGEPFEGSPYLLALADKVT 137 (190)
T ss_pred CCCEEEEEcccc-CCHHHHHHHHHHHHHcCCeEEEEecCcccccCcCchHHHHHHhcCeEE
Confidence 578999997643 345557778888888998876654332222222233455666777665
No 163
>TIGR01328 met_gam_lyase methionine gamma-lyase. This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine.
Probab=41.56 E-value=2.3e+02 Score=25.50 Aligned_cols=38 Identities=13% Similarity=0.134 Sum_probs=24.3
Q ss_pred cceEEEEeccc-cccChHHHHHHHHHHhhCCCEEEEeCC
Q 022475 112 KAKYYYIAGFF-LTVSPESIQMVAEHAAAKNKVFMMNLS 149 (296)
Q Consensus 112 ~~~~~~i~g~~-~~~~~~~~~~~~~~~~~~~~~~~~d~~ 149 (296)
+.++++++... +......+.++.+.+++.++.+++|-.
T Consensus 144 ~tklV~le~p~Np~G~v~dl~~I~~la~~~gi~livD~a 182 (391)
T TIGR01328 144 NTKIVYFETPANPTMKLIDMERVCRDAHSQGVKVIVDNT 182 (391)
T ss_pred CCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECC
Confidence 46788876432 211222356788888888988888864
No 164
>PF07505 Gp37_Gp68: Phage protein Gp37/Gp68; InterPro: IPR011101 This entry is represented by Burkholderia phage phiE125, Gp37. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=40.22 E-value=69 Score=27.15 Aligned_cols=41 Identities=15% Similarity=0.226 Sum_probs=33.4
Q ss_pred hhhcceEEEEecccc----ccChHHHHHHHHHHhhCCCEEEEeCC
Q 022475 109 IVEKAKYYYIAGFFL----TVSPESIQMVAEHAAAKNKVFMMNLS 149 (296)
Q Consensus 109 ~~~~~~~~~i~g~~~----~~~~~~~~~~~~~~~~~~~~~~~d~~ 149 (296)
.+...|||+++|.+. .+.++.+..+.+.|.+.|++|.|---
T Consensus 185 ~~~~IdWVIvGGESG~~ARp~~~~Wvr~irdqC~~~gvpFffKQw 229 (261)
T PF07505_consen 185 DLEGIDWVIVGGESGPGARPMHPDWVRSIRDQCAAAGVPFFFKQW 229 (261)
T ss_pred cCCCCCEEEECCCcCCCCCcCCHHHHHHHHHHHHHcCCcEEEEeC
Confidence 456789999998653 35679999999999999999887653
No 165
>KOG0257 consensus Kynurenine aminotransferase, glutamine transaminase K [Amino acid transport and metabolism]
Probab=40.16 E-value=2.9e+02 Score=25.14 Aligned_cols=40 Identities=20% Similarity=0.183 Sum_probs=28.6
Q ss_pred hhhcceEEEEecccc----ccChHHHHHHHHHHhhCCCEEEEeC
Q 022475 109 IVEKAKYYYIAGFFL----TVSPESIQMVAEHAAAKNKVFMMNL 148 (296)
Q Consensus 109 ~~~~~~~~~i~g~~~----~~~~~~~~~~~~~~~~~~~~~~~d~ 148 (296)
.-++.++++++.-+- ..+.+.+.++.+.|++++..++.|-
T Consensus 169 ~t~kTk~Ii~ntPhNPtGkvfsReeLe~ia~l~~k~~~lvisDe 212 (420)
T KOG0257|consen 169 ITEKTKAIILNTPHNPTGKVFSREELERIAELCKKHGLLVISDE 212 (420)
T ss_pred ccCCccEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCEEEEEhh
Confidence 346788888875331 2355788999999999997776663
No 166
>PRK07582 cystathionine gamma-lyase; Validated
Probab=39.83 E-value=2.7e+02 Score=24.72 Aligned_cols=55 Identities=11% Similarity=0.064 Sum_probs=26.2
Q ss_pred CceeecCChhHHHHHHHHHhhcCCCcEEEEEeecCCchhHHHHHHHHhcCCceeEEe
Q 022475 10 NVEYIAGGATQNSIKVAQWMLQIPGATSYIGCIGKDKFGEEMKKNSTAAGVNVKYYE 66 (296)
Q Consensus 10 ~~~~~~GG~~~n~a~~~~~l~~lg~~v~~~~~vG~D~~g~~i~~~l~~~gi~~~~~~ 66 (296)
..-...+|...+.+...+ +++.|..+.. ..-+--.....+...++..|+.+.++.
T Consensus 67 ~~v~~~sG~~Ai~~~l~a-ll~~Gd~Vl~-~~~~y~~~~~~~~~~l~~~G~~v~~v~ 121 (366)
T PRK07582 67 EALVFPSGMAAITAVLRA-LLRPGDTVVV-PADGYYQVRALAREYLAPLGVTVREAP 121 (366)
T ss_pred CEEEECCHHHHHHHHHHH-hcCCCCEEEE-eCCCcHhHHHHHHHHHhcCeEEEEEEC
Confidence 344456666655444434 4554544333 221111112223345667788777664
No 167
>PF13986 DUF4224: Domain of unknown function (DUF4224)
Probab=39.69 E-value=47 Score=19.82 Aligned_cols=32 Identities=9% Similarity=0.036 Sum_probs=23.2
Q ss_pred EcCHHHHHHHHHHcCCCCCCHHHHHHHHhcCCCCCCCCceEEE
Q 022475 172 FGNETEARTFAKVHGWETDNVEEIALKISQWPKASGTHKRITV 214 (296)
Q Consensus 172 ~~n~~E~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~vv 214 (296)
+++.+|+..|++ -..+...++.| ...|+..++
T Consensus 2 fLT~~El~elTG-----~k~~~~Q~~~L------~~~Gi~~~~ 33 (47)
T PF13986_consen 2 FLTDEELQELTG-----YKRPSKQIRWL------RRNGIPFVV 33 (47)
T ss_pred CCCHHHHHHHHC-----CCCHHHHHHHH------HHCCCeeEE
Confidence 578899999997 44677777777 466776544
No 168
>PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=38.91 E-value=2.8e+02 Score=25.39 Aligned_cols=38 Identities=16% Similarity=0.079 Sum_probs=23.9
Q ss_pred cceEEEEeccc-cccChHHHHHHHHHHhhCCCEEEEeCC
Q 022475 112 KAKYYYIAGFF-LTVSPESIQMVAEHAAAKNKVFMMNLS 149 (296)
Q Consensus 112 ~~~~~~i~g~~-~~~~~~~~~~~~~~~~~~~~~~~~d~~ 149 (296)
+.++|++.... +......+.++.+.++++++.++.|-.
T Consensus 149 ~tklV~l~sp~NPtG~v~di~~I~~la~~~gi~vIvD~t 187 (431)
T PRK08248 149 KTKALFAETIGNPKGDVLDIEAVAAIAHEHGIPLIVDNT 187 (431)
T ss_pred CCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEeCC
Confidence 46778776322 111112346788888888998888864
No 169
>PF01884 PcrB: PcrB family; InterPro: IPR008205 This entry represents geranylgeranylglyceryl phosphate (GGGP) synthase, which is a prenyltransferase that catalyses the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P). This reaction is the first ether-bond-formation step in the biosynthesis of archaeal membrane lipids. This entry also matches putative glycerol-1-phosphate prenyltransferases that may catalyse the transfer of a prenyl moiety to sn-glycerol-1-phosphate (G1P) []. Some of the prokaryotic proteins in this family are related to pcrB. The Staphylococcus aureus chromosomal gene pcrA encodes a protein with significant similarity (40% identity) to two Escherichia coli helicases: the helicase II encoded by the uvrD gene and the Rep helicase. PcrB gene seems to belong to an operon containing at least one other gene, pcrBA, downstream from pcrB []. The PcrB proteins often contain an FMN binding site although the function of these proteins is still unknown.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 1VIZ_A 2F6X_B 2F6U_B 3VKD_A 3VKA_A 3VK5_B 3VKC_B 3VKB_B.
Probab=38.81 E-value=77 Score=26.29 Aligned_cols=50 Identities=10% Similarity=0.147 Sum_probs=28.1
Q ss_pred hcceEEEEeccccccChHHHHHHHHHHhhCCCEEEEeCCchhhhhhhhHHHHhhcCCCcEEE
Q 022475 111 EKAKYYYIAGFFLTVSPESIQMVAEHAAAKNKVFMMNLSAPFICEFFREPQEKALPYMDYVF 172 (296)
Q Consensus 111 ~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~dv~~ 172 (296)
...|.+.++|.......+.+..+++.. ..+|+++.|+... .+-+.+|.++
T Consensus 31 ~gtDai~VGGS~~~~~~d~vv~~ik~~--~~lPvilfPg~~~----------~vs~~aDail 80 (230)
T PF01884_consen 31 SGTDAIIVGGSDTGVTLDNVVALIKRV--TDLPVILFPGSPS----------QVSPGADAIL 80 (230)
T ss_dssp TT-SEEEEE-STHCHHHHHHHHHHHHH--SSS-EEEETSTCC----------G--TTSSEEE
T ss_pred cCCCEEEECCCCCccchHHHHHHHHhc--CCCCEEEeCCChh----------hcCcCCCEEE
Confidence 678999999854122223333344433 6789999997754 4557787775
No 170
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=38.38 E-value=93 Score=25.57 Aligned_cols=30 Identities=20% Similarity=0.180 Sum_probs=20.1
Q ss_pred CcEEEEEeecCCchhHHHHHHHHhcCCceeEEe
Q 022475 34 GATSYIGCIGKDKFGEEMKKNSTAAGVNVKYYE 66 (296)
Q Consensus 34 ~~v~~~~~vG~D~~g~~i~~~l~~~gi~~~~~~ 66 (296)
.+|.++| -...|..+.+.|...||..-.+.
T Consensus 22 ~~VlivG---~GglGs~va~~La~~Gvg~i~lv 51 (228)
T cd00757 22 ARVLVVG---AGGLGSPAAEYLAAAGVGKLGLV 51 (228)
T ss_pred CcEEEEC---CCHHHHHHHHHHHHcCCCEEEEE
Confidence 5555554 34578888889999998554443
No 171
>PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=38.28 E-value=2.7e+02 Score=25.55 Aligned_cols=39 Identities=10% Similarity=0.069 Sum_probs=25.4
Q ss_pred hcceEEEEeccccc-cChHHHHHHHHHHhhCCCEEEEeCC
Q 022475 111 EKAKYYYIAGFFLT-VSPESIQMVAEHAAAKNKVFMMNLS 149 (296)
Q Consensus 111 ~~~~~~~i~g~~~~-~~~~~~~~~~~~~~~~~~~~~~d~~ 149 (296)
.+.++|++...... ....-+..+.+.++++|+++++|-.
T Consensus 148 ~~TklV~~e~~~np~g~v~Di~~I~~la~~~gi~livD~t 187 (433)
T PRK08134 148 PNTRLLFGETLGNPGLEVLDIPTVAAIAHEAGVPLLVDST 187 (433)
T ss_pred CCCeEEEEECCCcccCcccCHHHHHHHHHHcCCEEEEECC
Confidence 35677777643211 1113367788889999999988864
No 172
>PRK09330 cell division protein FtsZ; Validated
Probab=38.21 E-value=3e+02 Score=24.83 Aligned_cols=66 Identities=20% Similarity=0.123 Sum_probs=37.4
Q ss_pred hhhhhhcceEEEEeccccccC-hHHHHHHHHHHhhCCCEE-EEeCCchh------hhhhhhHHHHhhcCCCcEEE
Q 022475 106 IWSIVEKAKYYYIAGFFLTVS-PESIQMVAEHAAAKNKVF-MMNLSAPF------ICEFFREPQEKALPYMDYVF 172 (296)
Q Consensus 106 ~~~~~~~~~~~~i~g~~~~~~-~~~~~~~~~~~~~~~~~~-~~d~~~~~------~~~~~~~~~~~~l~~~dv~~ 172 (296)
+.+.++.+|.+++..-.-+-. ....--+.+.+++.++.+ .+=+ .|+ ......+.++.+.+++|.++
T Consensus 91 I~~~l~~~D~vfI~AGmGGGTGTGaapvIA~iake~g~ltvaVvt-~PF~fEG~~r~~nA~~gL~~L~~~~D~vI 164 (384)
T PRK09330 91 IREALEGADMVFITAGMGGGTGTGAAPVVAEIAKELGILTVAVVT-KPFSFEGKKRMKQAEEGIEELRKHVDTLI 164 (384)
T ss_pred HHHHHcCCCEEEEEecCCCcccHHHHHHHHHHHHHcCCcEEEEEe-cCccccchhHHHHHHHHHHHHHHHCCEEE
Confidence 456788999998864322222 233334557777777642 1111 122 12234566778888898887
No 173
>PRK07812 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=37.94 E-value=2.1e+02 Score=26.28 Aligned_cols=38 Identities=16% Similarity=0.166 Sum_probs=25.4
Q ss_pred cceEEEEeccc-cccChHHHHHHHHHHhhCCCEEEEeCC
Q 022475 112 KAKYYYIAGFF-LTVSPESIQMVAEHAAAKNKVFMMNLS 149 (296)
Q Consensus 112 ~~~~~~i~g~~-~~~~~~~~~~~~~~~~~~~~~~~~d~~ 149 (296)
+.++|++.... +.....-+..+.+.++++|+++++|-.
T Consensus 155 ~tklV~ie~~sNp~G~v~Dl~~I~~la~~~gi~liVD~t 193 (436)
T PRK07812 155 NTKAFFAETISNPQIDVLDIPGVAEVAHEAGVPLIVDNT 193 (436)
T ss_pred CCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECC
Confidence 46778776543 112223457788888899999988873
No 174
>cd04919 ACT_AK-Hom3_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=37.16 E-value=1e+02 Score=19.10 Aligned_cols=31 Identities=13% Similarity=0.268 Sum_probs=22.7
Q ss_pred EEEEeecCC-----chhHHHHHHHHhcCCceeEEec
Q 022475 37 SYIGCIGKD-----KFGEEMKKNSTAAGVNVKYYED 67 (296)
Q Consensus 37 ~~~~~vG~D-----~~g~~i~~~l~~~gi~~~~~~~ 67 (296)
.+++.+|++ .....+.+.|.+.||+.+.+..
T Consensus 2 ~~isvvg~~~~~~~~~~~~if~~L~~~~I~v~~i~q 37 (66)
T cd04919 2 AILSLVGKHMKNMIGIAGRMFTTLADHRINIEMISQ 37 (66)
T ss_pred eEEEEECCCCCCCcCHHHHHHHHHHHCCCCEEEEEe
Confidence 466777753 3456788899999999998743
No 175
>TIGR00065 ftsZ cell division protein FtsZ. This family consists of cell division protein FtsZ, a GTPase found in bacteria, the chloroplast of plants, and in archaebacteria. Structurally similar to tubulin, FtsZ undergoes GTP-dependent polymerization into filaments that form a cytoskeleton involved in septum synthesis.
Probab=36.95 E-value=2.2e+02 Score=25.28 Aligned_cols=67 Identities=18% Similarity=0.133 Sum_probs=35.8
Q ss_pred hhhhhhcceEEEEeccccccC-hHHHHHHHHHHhhCCCE-EEEeCCchhh------hhhhhHHHHhhcCCCcEEEc
Q 022475 106 IWSIVEKAKYYYIAGFFLTVS-PESIQMVAEHAAAKNKV-FMMNLSAPFI------CEFFREPQEKALPYMDYVFG 173 (296)
Q Consensus 106 ~~~~~~~~~~~~i~g~~~~~~-~~~~~~~~~~~~~~~~~-~~~d~~~~~~------~~~~~~~~~~~l~~~dv~~~ 173 (296)
+.+.++++|.+++....-+-+ ....-.+.+.+++.++. +.+-+ .|+. .......++.+.+.+|.+++
T Consensus 95 Ir~~le~~D~vfI~aglGGGTGSG~apvia~~ake~~~l~vaivt-~Pf~~Eg~~r~~nA~~~l~~L~~~~D~viv 169 (349)
T TIGR00065 95 IRKLLEGADMVFITAGMGGGTGTGAAPVVAKIAKELGALTVAVVT-KPFKFEGLKRRKKAEEGLERLKQAVDTLIV 169 (349)
T ss_pred HHHHHhCCCEEEEEEeccCccchhHHHHHHHHHHHcCCCEEEEEe-CCccccchhhHHHHHHHHHHHHHhCCEEEE
Confidence 445678899988764322222 23333455666666654 22211 1111 12245567778888888873
No 176
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=36.62 E-value=1.2e+02 Score=19.94 Aligned_cols=36 Identities=11% Similarity=0.159 Sum_probs=25.2
Q ss_pred hhcCCCcEEEEEeecC------CchhHHHHHHHHhcCCceeE
Q 022475 29 MLQIPGATSYIGCIGK------DKFGEEMKKNSTAAGVNVKY 64 (296)
Q Consensus 29 l~~lg~~v~~~~~vG~------D~~g~~i~~~l~~~gi~~~~ 64 (296)
|..+|.+|.++..-.. ....+.+.+.|++.||+..+
T Consensus 18 l~~~g~~vtli~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~ 59 (80)
T PF00070_consen 18 LAELGKEVTLIERSDRLLPGFDPDAAKILEEYLRKRGVEVHT 59 (80)
T ss_dssp HHHTTSEEEEEESSSSSSTTSSHHHHHHHHHHHHHTTEEEEE
T ss_pred HHHhCcEEEEEeccchhhhhcCHHHHHHHHHHHHHCCCEEEe
Confidence 3446699999865332 12567788899999998864
No 177
>COG0547 TrpD Anthranilate phosphoribosyltransferase [Amino acid transport and metabolism]
Probab=36.34 E-value=3.1e+02 Score=24.32 Aligned_cols=145 Identities=14% Similarity=0.095 Sum_probs=73.2
Q ss_pred hhhcceEEEEeccccccChHHHHHHHHHHhhCCCEEEEeCCchhhhhhhhHHHHhhcCCCcEEEcCHHHHHHHHHHcCCC
Q 022475 109 IVEKAKYYYIAGFFLTVSPESIQMVAEHAAAKNKVFMMNLSAPFICEFFREPQEKALPYMDYVFGNETEARTFAKVHGWE 188 (296)
Q Consensus 109 ~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~dv~~~n~~E~~~l~~~~~~~ 188 (296)
.+++..+.++= . ....-.+.++...-++.|++.+||.=.|.+ -++-+..-++=+...++..
T Consensus 143 ~l~~~g~~Flf--A-p~~hp~~k~v~~vR~~LG~RTifN~LGPL~--------NPa~~~~qliGV~~p~~~~-------- 203 (338)
T COG0547 143 ALEETGIGFLF--A-PAYHPAMKHVAPVRKELGVRTIFNLLGPLL--------NPARAKLQLIGVYHPELVE-------- 203 (338)
T ss_pred HHHhcCeEEEE--c-cccCHHHHHHHHHHHHcCCCchHHhhcccc--------CCCCCCceEEEEeCHHHHH--------
Confidence 45555555542 1 222345567777778889999999866652 1222233344344444332
Q ss_pred CCCHHHHHHHHhcCCCCCCCCceEEEEeeCCCc-----------EEEEECCeEEE--Eeccc--CCCccccCCCCCchhh
Q 022475 189 TDNVEEIALKISQWPKASGTHKRITVITQGADP-----------VVVAEDGKVKL--FPVIL--LPKEKLVDTNGAGDAF 253 (296)
Q Consensus 189 ~~~~~~~~~~l~~~~~~~~~g~~~vvvt~G~~G-----------~~~~~~~~~~~--~~~~~--~~~~~vvd~tGaGDaf 253 (296)
..++.+. ..|.+..+|-+|.+| ++..++++... +.+.. .+....-|-.|..-.-
T Consensus 204 -----~~A~~l~------~LG~~ralvV~G~~GlDE~~~~~~t~v~~l~~g~i~~~~l~pe~~Gl~~~~~~~l~~~~~~e 272 (338)
T COG0547 204 -----LLAEALR------LLGVERALVVHGLEGLDEVTPTGTTLVAELKDGEIREYTLTPEDFGLERAPLEDLPGGDPEE 272 (338)
T ss_pred -----HHHHHHH------HhCcceEEEEECCCCcccccCCCCceEEEEcCCceEEEEeCHHhcCCCCCchhhcCCCCHHH
Confidence 2233332 335566666688766 23334444332 32221 1122234445554455
Q ss_pred hHHHHHHHhcCCC-HHHHHHHhhHHhhhhhh
Q 022475 254 VGGFLSQLVQEKP-VEDCVRTGCYAANVVIQ 283 (296)
Q Consensus 254 ~ag~~~~l~~~~~-~~~a~~~A~~~aa~~~~ 283 (296)
.+.++-..++|.. ...-+-..|+++++.+.
T Consensus 273 na~~~~~vL~G~~~~~~d~v~~Naa~~L~~~ 303 (338)
T COG0547 273 NAEILRAVLAGEEGPARDAVALNAAAALYAA 303 (338)
T ss_pred HHHHHHHHHCCCCcchHHHHHHHHHHHHHHc
Confidence 6778888888844 43333344444444443
No 178
>COG0206 FtsZ Cell division GTPase [Cell division and chromosome partitioning]
Probab=36.04 E-value=2.7e+02 Score=24.64 Aligned_cols=72 Identities=21% Similarity=0.171 Sum_probs=36.7
Q ss_pred hhhhhhhcceEEEEe-ccccccChHHHHHHHHHHhhCCCEE-EEeCCchhh------hhhhhHHHHhhcCCCcEEE--cC
Q 022475 105 EIWSIVEKAKYYYIA-GFFLTVSPESIQMVAEHAAAKNKVF-MMNLSAPFI------CEFFREPQEKALPYMDYVF--GN 174 (296)
Q Consensus 105 ~~~~~~~~~~~~~i~-g~~~~~~~~~~~~~~~~~~~~~~~~-~~d~~~~~~------~~~~~~~~~~~l~~~dv~~--~n 174 (296)
++.+.+..+|.+++. |..-..-....--+.+.+++.|.++ .+.. .|+. .....+.++.+-+++|-++ +|
T Consensus 88 ~I~~~l~g~dmvfitaG~GGGTGtGaaPVvakiake~g~ltvavvt-~Pf~~EG~~r~~~A~~gi~~L~~~~DtlIvi~N 166 (338)
T COG0206 88 EIEEALKGADMVFVTAGMGGGTGTGAAPVVAEIAKELGALTVAVVT-LPFSFEGSPRMENAEEGIEELREVVDTLIVIPN 166 (338)
T ss_pred HHHHHhccCCeEEEEeeecCCccccccHHHHHHHHhcCCcEEEEEE-ecchhcCchHHHHHHHHHHHHHHhCCcEEEEec
Confidence 355678889955554 3322222233334556667777652 2222 1211 1224455667777776554 66
Q ss_pred HHH
Q 022475 175 ETE 177 (296)
Q Consensus 175 ~~E 177 (296)
+.=
T Consensus 167 dkl 169 (338)
T COG0206 167 DKL 169 (338)
T ss_pred HHH
Confidence 653
No 179
>PF02659 DUF204: Domain of unknown function DUF; InterPro: IPR003810 Uncharacterised domain in proteins of unknown function.
Probab=35.98 E-value=80 Score=20.16 Aligned_cols=26 Identities=19% Similarity=0.041 Sum_probs=17.7
Q ss_pred hhhhHHHHHHHhcCCCHHHHHHHhhHH
Q 022475 251 DAFVGGFLSQLVQEKPVEDCVRTGCYA 277 (296)
Q Consensus 251 Daf~ag~~~~l~~~~~~~~a~~~A~~~ 277 (296)
|+|.+|+.+++. +.+....+..+...
T Consensus 4 Daf~vg~~~g~~-~~~~~~~~~~~~~i 29 (67)
T PF02659_consen 4 DAFAVGISYGLR-GISRRIILLIALII 29 (67)
T ss_pred HHHHHHHHHHHH-cCChHHHHHHHHHH
Confidence 899999999998 44444444444433
No 180
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=35.60 E-value=2.2e+02 Score=23.72 Aligned_cols=31 Identities=10% Similarity=0.120 Sum_probs=24.5
Q ss_pred CcEEEEEeecCCchhHHHHHHHHhcCCceeEE
Q 022475 34 GATSYIGCIGKDKFGEEMKKNSTAAGVNVKYY 65 (296)
Q Consensus 34 ~~v~~~~~vG~D~~g~~i~~~l~~~gi~~~~~ 65 (296)
-++.+++.--.+ .-+.+++++++.|+++..+
T Consensus 121 ~RIalvTPY~~~-v~~~~~~~l~~~G~eV~~~ 151 (239)
T TIGR02990 121 RRISLLTPYTPE-TSRPMAQYFAVRGFEIVNF 151 (239)
T ss_pred CEEEEECCCcHH-HHHHHHHHHHhCCcEEeee
Confidence 467888877665 7788889999999988655
No 181
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=35.39 E-value=46 Score=27.94 Aligned_cols=28 Identities=21% Similarity=0.185 Sum_probs=19.2
Q ss_pred CCHHHHHHHHhcCCCCCCCCceEEEEeeCCCcEE
Q 022475 190 DNVEEIALKISQWPKASGTHKRITVITQGADPVV 223 (296)
Q Consensus 190 ~~~~~~~~~l~~~~~~~~~g~~~vvvt~G~~G~~ 223 (296)
++.+++++.+. ..+.+.|++|.|++-..
T Consensus 116 ~~~~eA~~~l~------~~~~~~iflttGsk~L~ 143 (249)
T PF02571_consen 116 DSYEEAAELLK------ELGGGRIFLTTGSKNLP 143 (249)
T ss_pred CCHHHHHHHHh------hcCCCCEEEeCchhhHH
Confidence 46667777773 34446799999988744
No 182
>PF12687 DUF3801: Protein of unknown function (DUF3801); InterPro: IPR024234 This functionally uncharacterised protein family is found in bacteria. Proteins found in this family are typically between 158 and 187 amino acids in length and include the PcfB protein.
Probab=35.03 E-value=1.4e+02 Score=24.20 Aligned_cols=51 Identities=22% Similarity=0.179 Sum_probs=36.8
Q ss_pred HhhcCCCcEEEEEeecCCchhHHHHHHHHhcCCceeEEecCCCCceeEEEEEe
Q 022475 28 WMLQIPGATSYIGCIGKDKFGEEMKKNSTAAGVNVKYYEDESAPTGTCAVCVV 80 (296)
Q Consensus 28 ~l~~lg~~v~~~~~vG~D~~g~~i~~~l~~~gi~~~~~~~~~~~t~~~~~~~~ 80 (296)
+|+..|..+..|..-.. .-..+...+..+||++..+.......+.+.+++.
T Consensus 26 ~L~k~g~~l~~i~i~~~--~lk~F~k~AkKyGV~yav~kdk~~~~~~~~V~Fk 76 (204)
T PF12687_consen 26 KLLKQGKGLKNIEITDE--DLKEFKKEAKKYGVDYAVKKDKSTGPGKYDVFFK 76 (204)
T ss_pred HHHhcCCCceEEecCHh--hHHHHHHHHHHcCCceEEeeccCCCCCcEEEEEE
Confidence 34445667777776334 4677889999999999988766666667777765
No 183
>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=34.35 E-value=3.3e+02 Score=24.06 Aligned_cols=37 Identities=19% Similarity=0.274 Sum_probs=26.2
Q ss_pred hhcceEEEEeccccccChHHHHHHHHHHhhCCCEEEEeCCchh
Q 022475 110 VEKAKYYYIAGFFLTVSPESIQMVAEHAAAKNKVFMMNLSAPF 152 (296)
Q Consensus 110 ~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 152 (296)
+.+.|++++. .+++....+...+.+.|++ ++|.++.+
T Consensus 64 ~~~vD~vFla-----~p~~~s~~~v~~~~~~G~~-VIDlS~~f 100 (336)
T PRK05671 64 FSQVQLAFFA-----AGAAVSRSFAEKARAAGCS-VIDLSGAL 100 (336)
T ss_pred hcCCCEEEEc-----CCHHHHHHHHHHHHHCCCe-EEECchhh
Confidence 4678999884 3567777788888888876 45665543
No 184
>PRK08247 cystathionine gamma-synthase; Reviewed
Probab=34.04 E-value=3.4e+02 Score=24.09 Aligned_cols=37 Identities=14% Similarity=0.155 Sum_probs=25.7
Q ss_pred cceEEEEeccc-cccChHHHHHHHHHHhhCCCEEEEeC
Q 022475 112 KAKYYYIAGFF-LTVSPESIQMVAEHAAAKNKVFMMNL 148 (296)
Q Consensus 112 ~~~~~~i~g~~-~~~~~~~~~~~~~~~~~~~~~~~~d~ 148 (296)
+.++++++..+ +......+.++.+.+++.++.++.|-
T Consensus 136 ~tklv~le~P~NP~~~~~dl~~I~~la~~~g~~lIvD~ 173 (366)
T PRK08247 136 NTKAIFIETPTNPLMQETDIAAIAKIAKKHGLLLIVDN 173 (366)
T ss_pred CceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEEC
Confidence 46788775332 33344667888888888888888775
No 185
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=33.76 E-value=2.2e+02 Score=27.00 Aligned_cols=92 Identities=10% Similarity=0.014 Sum_probs=45.9
Q ss_pred ceEEEEeccccccChHHHHHHHHHHhhCCCEEEE---eCCchhhhhhhhHHHHhhcCC-CcEEEcCHHHHHHHHHHcCCC
Q 022475 113 AKYYYIAGFFLTVSPESIQMVAEHAAAKNKVFMM---NLSAPFICEFFREPQEKALPY-MDYVFGNETEARTFAKVHGWE 188 (296)
Q Consensus 113 ~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~---d~~~~~~~~~~~~~~~~~l~~-~dv~~~n~~E~~~l~~~~~~~ 188 (296)
+|++=+.- . .++.+.+.+..++..+.+++. |+....-.+...+.+++.... +|++++--.
T Consensus 111 ~d~iDiEl---~-~~~~~~~~~~~~~~~~~~vI~S~H~f~~tP~~~el~~~~~~~~~~gaDi~Kia~~------------ 174 (529)
T PLN02520 111 ADYVDVEL---K-VAHEFINSISGKKPEKCKVIVSSHNYENTPSVEELGNLVARIQATGADIVKIATT------------ 174 (529)
T ss_pred CCEEEEEc---C-CchhHHHHHHhhhhcCCEEEEEecCCCCCCCHHHHHHHHHHHHHhCCCEEEEecC------------
Confidence 56666642 1 234455666667777877776 432222122334445554443 788874211
Q ss_pred CCCHHHHHHHHhcCCCCCCCCceEEEEeeCCCcEE
Q 022475 189 TDNVEEIALKISQWPKASGTHKRITVITQGADPVV 223 (296)
Q Consensus 189 ~~~~~~~~~~l~~~~~~~~~g~~~vvvt~G~~G~~ 223 (296)
..+..+..+.+... .....+.+.+.||+.|.+
T Consensus 175 ~~~~~D~~~ll~~~---~~~~~p~i~~~MG~~G~~ 206 (529)
T PLN02520 175 ALDITDVARMFQIT---VHSQVPTIGLVMGERGLI 206 (529)
T ss_pred CCCHHHHHHHHHHH---hhcCCCEEEEecCCCCch
Confidence 12222222222110 122456777889999844
No 186
>KOG3040 consensus Predicted sugar phosphatase (HAD superfamily) [General function prediction only]
Probab=33.72 E-value=1.3e+02 Score=24.66 Aligned_cols=43 Identities=7% Similarity=0.111 Sum_probs=33.7
Q ss_pred HHHHHHHhhcCCCcEEEEEeecCCchhHHHHHHHHhcCCceeEE
Q 022475 22 SIKVAQWMLQIPGATSYIGCIGKDKFGEEMKKNSTAAGVNVKYY 65 (296)
Q Consensus 22 ~a~~~~~l~~lg~~v~~~~~vG~D~~g~~i~~~l~~~gi~~~~~ 65 (296)
..-++++|-+.+..|.|++.--.+ .-..+.+.|++.|++.+--
T Consensus 28 a~eAl~rLr~~~~kVkFvTNttk~-Sk~~l~~rL~rlgf~v~ee 70 (262)
T KOG3040|consen 28 AVEALKRLRDQHVKVKFVTNTTKE-SKRNLHERLQRLGFDVSEE 70 (262)
T ss_pred HHHHHHHHHhcCceEEEEecCcch-hHHHHHHHHHHhCCCccHH
Confidence 445677765567899999987776 6677889999999998754
No 187
>PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases. It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B ....
Probab=33.36 E-value=1.4e+02 Score=25.78 Aligned_cols=76 Identities=12% Similarity=-0.022 Sum_probs=47.5
Q ss_pred ccCccccCChhhhh----hhhcceEEEEecccc-----ccChHHHHHHHHHHhhCCCEEEEeCCchhhhh--hhhHHHHh
Q 022475 95 CYKSEHLKRPEIWS----IVEKAKYYYIAGFFL-----TVSPESIQMVAEHAAAKNKVFMMNLSAPFICE--FFREPQEK 163 (296)
Q Consensus 95 ~~~~~~~~~~~~~~----~~~~~~~~~i~g~~~-----~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~--~~~~~~~~ 163 (296)
.++++++.. ... ......+|+++.-+- ..+.+.+..+.+.|+++|+++.+|-. ..|.- .....+.+
T Consensus 105 ~l~~~~l~~--~~~~~~~h~~~~~~v~le~t~~~~GG~~~s~~el~ai~~~a~~~gl~lhmDGA-Rl~~a~~~~~~~~~e 181 (290)
T PF01212_consen 105 KLTPEDLEA--AIEEHGAHHPQPAVVSLENTTELAGGTVYSLEELRAISELAREHGLPLHMDGA-RLANAAAALGVSLAE 181 (290)
T ss_dssp BB-HHHHHH--HHHHHTGTSGGEEEEEEESSBTTTTSB---HHHHHHHHHHHHHHT-EEEEEET-THHHHHCHHHHHHHH
T ss_pred CCCHHHHHH--HhhhccccCCCccEEEEEecCcCCCCeeCCHHHHHHHHHHHHhCceEEEEehh-hHHHhhhcccccHHH
Confidence 466666654 111 124578888876442 13568889999999999999999974 33321 23444666
Q ss_pred hcCCCcEEEc
Q 022475 164 ALPYMDYVFG 173 (296)
Q Consensus 164 ~l~~~dv~~~ 173 (296)
+...+|.+.+
T Consensus 182 ~~~~~D~v~~ 191 (290)
T PF01212_consen 182 IAAGADSVSF 191 (290)
T ss_dssp HHTTSSEEEE
T ss_pred HhhhCCEEEE
Confidence 7788888875
No 188
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=33.22 E-value=89 Score=25.17 Aligned_cols=27 Identities=22% Similarity=0.241 Sum_probs=18.9
Q ss_pred CcEEEEEeecCCchhHHHHHHHHhcCCcee
Q 022475 34 GATSYIGCIGKDKFGEEMKKNSTAAGVNVK 63 (296)
Q Consensus 34 ~~v~~~~~vG~D~~g~~i~~~l~~~gi~~~ 63 (296)
.++.++| -...|..+.+.|...|+..-
T Consensus 22 ~~VlviG---~GglGs~ia~~La~~Gv~~i 48 (202)
T TIGR02356 22 SHVLIIG---AGGLGSPAALYLAGAGVGTI 48 (202)
T ss_pred CCEEEEC---CCHHHHHHHHHHHHcCCCeE
Confidence 5555554 34578888899999998543
No 189
>PRK13018 cell division protein FtsZ; Provisional
Probab=33.07 E-value=3.7e+02 Score=24.26 Aligned_cols=68 Identities=15% Similarity=0.037 Sum_probs=37.4
Q ss_pred hhhhhhcceEEEEeccccc-cChHHHHHHHHHHhhCCCEE---EEeCCchh---hhhhhhHHHHhhcCCCcEEEc
Q 022475 106 IWSIVEKAKYYYIAGFFLT-VSPESIQMVAEHAAAKNKVF---MMNLSAPF---ICEFFREPQEKALPYMDYVFG 173 (296)
Q Consensus 106 ~~~~~~~~~~~~i~g~~~~-~~~~~~~~~~~~~~~~~~~~---~~d~~~~~---~~~~~~~~~~~~l~~~dv~~~ 173 (296)
+.+.++.+|.|++..-.-+ .-....-.+++.+++.+..+ +.-|-... ........++.+.+++|.+++
T Consensus 106 I~~~le~~D~vfI~aGLGGGTGSGaapvIa~iake~g~ltv~vVt~Pf~~EG~~r~~nA~~gL~~L~e~~D~viv 180 (378)
T PRK13018 106 IKEVLKGADLVFVTAGMGGGTGTGAAPVVAEIAKEQGALVVGVVTKPFKFEGRARMQKAEEGIERLREAADTVIV 180 (378)
T ss_pred HHHHhcCCCEEEEEeeccCcchhhHHHHHHHHHHHcCCCeEEEEEcCcccccHhHHHHHHHHHHHHHHhCCEEEE
Confidence 4456788998888643322 22234455667777766542 22221110 011234567788888888873
No 190
>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]
Probab=32.68 E-value=3.8e+02 Score=24.25 Aligned_cols=91 Identities=12% Similarity=0.145 Sum_probs=52.9
Q ss_pred hhcCCCcEEEEEeecCCchhHHHHHHHHhcCCceeEEecCCCCceeEEEEEeCCeeceeeccccccccCccccCChhhhh
Q 022475 29 MLQIPGATSYIGCIGKDKFGEEMKKNSTAAGVNVKYYEDESAPTGTCAVCVVGGERSLVANLSAANCYKSEHLKRPEIWS 108 (296)
Q Consensus 29 l~~lg~~v~~~~~vG~D~~g~~i~~~l~~~gi~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (296)
+...|.+|..+. +..||+.+.+.++..|.+...+..+-+ ..++++.+.. ..+
T Consensus 76 l~~pgdkVLv~~---nG~FG~R~~~ia~~~g~~v~~~~~~wg-----------------------~~v~p~~v~~--~L~ 127 (383)
T COG0075 76 LVEPGDKVLVVV---NGKFGERFAEIAERYGAEVVVLEVEWG-----------------------EAVDPEEVEE--ALD 127 (383)
T ss_pred ccCCCCeEEEEe---CChHHHHHHHHHHHhCCceEEEeCCCC-----------------------CCCCHHHHHH--HHh
Confidence 555566665553 235999999999999998886643311 1344444443 111
Q ss_pred ---hhhcceEEEEeccccccChHHHHHHHHHHhhCCCEEEEeCC
Q 022475 109 ---IVEKAKYYYIAGFFLTVSPESIQMVAEHAAAKNKVFMMNLS 149 (296)
Q Consensus 109 ---~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 149 (296)
.++-.-++|....+-.+ .-+.++.+.+++++..+++|--
T Consensus 128 ~~~~~~~V~~vH~ETSTGvl--npl~~I~~~~k~~g~l~iVDaV 169 (383)
T COG0075 128 KDPDIKAVAVVHNETSTGVL--NPLKEIAKAAKEHGALLIVDAV 169 (383)
T ss_pred cCCCccEEEEEeccCccccc--CcHHHHHHHHHHcCCEEEEEec
Confidence 11222333433222111 3457788888889999888863
No 191
>PRK07324 transaminase; Validated
Probab=32.46 E-value=3.6e+02 Score=23.92 Aligned_cols=37 Identities=11% Similarity=0.072 Sum_probs=24.3
Q ss_pred cceEEEEeccc-c---ccChHHHHHHHHHHhhCCCEEEEeC
Q 022475 112 KAKYYYIAGFF-L---TVSPESIQMVAEHAAAKNKVFMMNL 148 (296)
Q Consensus 112 ~~~~~~i~g~~-~---~~~~~~~~~~~~~~~~~~~~~~~d~ 148 (296)
+.++++++..+ + ..+++.+.++++.|+++++.++.|-
T Consensus 153 ~~kli~i~~p~NPtG~~~~~~~l~~i~~~a~~~~~~ii~De 193 (373)
T PRK07324 153 NTKLICINNANNPTGALMDRAYLEEIVEIARSVDAYVLSDE 193 (373)
T ss_pred CCcEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEc
Confidence 45677775322 1 2355677888888888888777773
No 192
>TIGR01326 OAH_OAS_sulfhy OAH/OAS sulfhydrylase. This model describes a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine (OAH) sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS) sulphydrylase (EC 2.5.1.47). An alternate name for OAH sulfhydrylase is homocysteine synthase. This model is designated subfamily because it may or may not have both activities.
Probab=32.38 E-value=3.8e+02 Score=24.30 Aligned_cols=38 Identities=16% Similarity=0.188 Sum_probs=23.7
Q ss_pred cceEEEEeccc-cccChHHHHHHHHHHhhCCCEEEEeCC
Q 022475 112 KAKYYYIAGFF-LTVSPESIQMVAEHAAAKNKVFMMNLS 149 (296)
Q Consensus 112 ~~~~~~i~g~~-~~~~~~~~~~~~~~~~~~~~~~~~d~~ 149 (296)
+.++++++... +......+..+.+.+++.++.+++|-.
T Consensus 142 ~t~~V~le~p~NPtg~v~dl~~I~~la~~~~i~livD~t 180 (418)
T TIGR01326 142 NTKAVFAETIGNPAINVPDIEAIAEVAHAHGVPLIVDNT 180 (418)
T ss_pred CCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECC
Confidence 46777776432 111112356788888888988888863
No 193
>PRK08249 cystathionine gamma-synthase; Provisional
Probab=32.30 E-value=2.9e+02 Score=24.99 Aligned_cols=38 Identities=13% Similarity=0.130 Sum_probs=23.2
Q ss_pred cceEEEEeccc-cccChHHHHHHHHHHhhCCCEEEEeCC
Q 022475 112 KAKYYYIAGFF-LTVSPESIQMVAEHAAAKNKVFMMNLS 149 (296)
Q Consensus 112 ~~~~~~i~g~~-~~~~~~~~~~~~~~~~~~~~~~~~d~~ 149 (296)
+.++++++..+ +....--+..+.+.++++++.+++|-.
T Consensus 149 ~tklV~ie~p~NPtg~v~dl~~I~~la~~~gi~livD~t 187 (398)
T PRK08249 149 GCDLLYLETPTNPTLKIVDIERLAAAAKKVGALVVVDNT 187 (398)
T ss_pred CCeEEEEECCCCCCCccCCHHHHHHHHHHcCCEEEEECC
Confidence 46788775422 111112256677888888888888863
No 194
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=32.08 E-value=1.2e+02 Score=24.87 Aligned_cols=71 Identities=21% Similarity=0.099 Sum_probs=47.5
Q ss_pred hhhhcceEEEEeccccccChHHHHHHHHHHhh-CCCEEEEeCCchh-------------hhhhhhHHHHhhcCCCcEEE-
Q 022475 108 SIVEKAKYYYIAGFFLTVSPESIQMVAEHAAA-KNKVFMMNLSAPF-------------ICEFFREPQEKALPYMDYVF- 172 (296)
Q Consensus 108 ~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~~~~-------------~~~~~~~~~~~~l~~~dv~~- 172 (296)
+..+.+|++++. ++-+.+..+++..+. .+-++++|+..|. +.....+.+.++++.+.|++
T Consensus 56 dA~~~aDVVvLA-----VP~~a~~~v~~~l~~~~~~KIvID~tnp~~~~~~~~~~~~~~~~~saae~va~~lp~akVVkA 130 (211)
T COG2085 56 DAAALADVVVLA-----VPFEAIPDVLAELRDALGGKIVIDATNPIEVNGEPGDLYLVPSEGSAAEIVAKLLPGAKVVKA 130 (211)
T ss_pred HHHhcCCEEEEe-----ccHHHHHhHHHHHHHHhCCeEEEecCCCccccCCccccccCCCCCcHHHHHHHHCCCcchhhh
Confidence 456789999994 455655666655554 4456777776552 11235677888999999998
Q ss_pred cCHHHHHHHHH
Q 022475 173 GNETEARTFAK 183 (296)
Q Consensus 173 ~n~~E~~~l~~ 183 (296)
+|.-.+..|..
T Consensus 131 Fn~i~a~~l~~ 141 (211)
T COG2085 131 FNTIPAAVLAD 141 (211)
T ss_pred hcccCHHHhcc
Confidence 78777776653
No 195
>TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=31.96 E-value=3.7e+02 Score=23.99 Aligned_cols=38 Identities=18% Similarity=0.172 Sum_probs=25.2
Q ss_pred cceEEEEeccc-cccChHHHHHHHHHHhhCCCEEEEeCC
Q 022475 112 KAKYYYIAGFF-LTVSPESIQMVAEHAAAKNKVFMMNLS 149 (296)
Q Consensus 112 ~~~~~~i~g~~-~~~~~~~~~~~~~~~~~~~~~~~~d~~ 149 (296)
+.++++++... +......+..+.+.|+++++.+++|-.
T Consensus 131 ~tklv~le~psnptg~v~dl~~I~~la~~~g~~vivD~a 169 (378)
T TIGR01329 131 KTKLVLLESPTNPLQKIVDIRKISEMAHAQNALVVVDNT 169 (378)
T ss_pred CceEEEEECCCCCCCeeecHHHHHHHHHHcCCEEEEECC
Confidence 56788877432 111122467788888999999888864
No 196
>PRK07811 cystathionine gamma-synthase; Provisional
Probab=31.90 E-value=2.6e+02 Score=25.09 Aligned_cols=37 Identities=16% Similarity=0.135 Sum_probs=25.9
Q ss_pred cceEEEEeccc-cccChHHHHHHHHHHhhCCCEEEEeC
Q 022475 112 KAKYYYIAGFF-LTVSPESIQMVAEHAAAKNKVFMMNL 148 (296)
Q Consensus 112 ~~~~~~i~g~~-~~~~~~~~~~~~~~~~~~~~~~~~d~ 148 (296)
+.++++++..+ +......+..+.+.+++.++.++.|-
T Consensus 146 ~tklV~ie~p~NPtg~~~dl~~I~~la~~~gi~lIvD~ 183 (388)
T PRK07811 146 RTKLIWVETPTNPLLSITDIAALAELAHDAGAKVVVDN 183 (388)
T ss_pred CCeEEEEECCCCCcceecCHHHHHHHHHHcCCEEEEEC
Confidence 56788886433 22234557788888888999988886
No 197
>KOG3361 consensus Iron binding protein involved in Fe-S cluster formation [Energy production and conversion]
Probab=31.75 E-value=49 Score=24.59 Aligned_cols=34 Identities=18% Similarity=0.346 Sum_probs=26.0
Q ss_pred CCCCCchhhhHH-HHHHHhcCCCHHHHHHHhhHHh
Q 022475 245 DTNGAGDAFVGG-FLSQLVQEKPVEDCVRTGCYAA 278 (296)
Q Consensus 245 d~tGaGDaf~ag-~~~~l~~~~~~~~a~~~A~~~a 278 (296)
.|-|||-+.++. ++.-+.+|++++|++..-|.=-
T Consensus 85 KTFGCGSAIASSS~aTewvkgkt~dea~kIkNteI 119 (157)
T KOG3361|consen 85 KTFGCGSAIASSSLATEWVKGKTLDEALKIKNTEI 119 (157)
T ss_pred eecccchHhhhhHHHHHHHccccHHHHHhcccHHH
Confidence 468999988765 4455899999999998765433
No 198
>PLN02242 methionine gamma-lyase
Probab=31.48 E-value=4e+02 Score=24.24 Aligned_cols=36 Identities=19% Similarity=0.210 Sum_probs=23.2
Q ss_pred ceEEEEeccc-cccChHHHHHHHHHHhhCCCEEEEeC
Q 022475 113 AKYYYIAGFF-LTVSPESIQMVAEHAAAKNKVFMMNL 148 (296)
Q Consensus 113 ~~~~~i~g~~-~~~~~~~~~~~~~~~~~~~~~~~~d~ 148 (296)
.++++++... +......+.++.+.++++++.+++|-
T Consensus 164 tklV~lesp~NPtG~v~dl~~I~~la~~~gi~livDe 200 (418)
T PLN02242 164 TKVLYFESISNPTLTVADIPELARIAHEKGVTVVVDN 200 (418)
T ss_pred CEEEEEecCCCCCCcccCHHHHHHHHHHhCCEEEEEC
Confidence 6778777533 12222345777788888888887775
No 199
>cd04857 Peptidases_S8_Tripeptidyl_Aminopeptidase_II Peptidase S8 family domain in Tripeptidyl aminopeptidases_II. Tripeptidyl aminopeptidases II are member of the peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Tripeptidyl aminopeptidase II removes tripeptides from the free N terminus of oligopeptides as well as having endoproteolytic activity. Some tripeptidyl aminopeptidases have been shown to cleave tripeptides and small peptides, e.g. angiotensin II and glucagon, while others are believed to be involved in MHC I processing.
Probab=31.28 E-value=64 Score=29.36 Aligned_cols=52 Identities=25% Similarity=0.474 Sum_probs=34.3
Q ss_pred HHHHHhcCCCCCCCCceEEEEeeCC----CcEEEEECCeEEEEecccCCCccccCCCCCchhhh
Q 022475 195 IALKISQWPKASGTHKRITVITQGA----DPVVVAEDGKVKLFPVILLPKEKLVDTNGAGDAFV 254 (296)
Q Consensus 195 ~~~~l~~~~~~~~~g~~~vvvt~G~----~G~~~~~~~~~~~~~~~~~~~~~vvd~tGaGDaf~ 254 (296)
+.+.|.++|...++|+...|+=.|- -|....++++.+.+ .++|.||+||.=+
T Consensus 10 ~~~f~~~~p~~dgr~v~iai~dtgvd~~~~~lq~t~~g~~ki~--------d~~d~t~~gdv~~ 65 (412)
T cd04857 10 ALRFLQKYPEYDGRGVLIAILDTGVDPGAPGLQVTTDGKPKII--------DIIDCTGSGDVDT 65 (412)
T ss_pred HHHHHHHCcCCCCCCcEEEEecCCCCCCCCcccccCCCCCeEE--------EEEeCCCCCCccc
Confidence 4445555555588888877766554 45555566665543 6899999999533
No 200
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=31.26 E-value=1.9e+02 Score=24.73 Aligned_cols=73 Identities=11% Similarity=-0.122 Sum_probs=40.8
Q ss_pred hcceEEEEeccccccChHHHHHHHHHHhhCCCEEEEeCCch--hh-hhhhhHHHHhhcCCCcEEEcC-HHHHHHHHH
Q 022475 111 EKAKYYYIAGFFLTVSPESIQMVAEHAAAKNKVFMMNLSAP--FI-CEFFREPQEKALPYMDYVFGN-ETEARTFAK 183 (296)
Q Consensus 111 ~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~-~~~~~~~~~~~l~~~dv~~~n-~~E~~~l~~ 183 (296)
.+.|++|+..+.....+.....+....+..++++++..... .. ..........+++.+|.+++. .+.++.+..
T Consensus 75 ~~~dii~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~ 151 (366)
T cd03822 75 SGPDVVVIQHEYGIFGGEAGLYLLLLLRGLGIPVVVTLHTVLLHEPRPGDRALLRLLLRRADAVIVMSSELLRALLL 151 (366)
T ss_pred cCCCEEEEeeccccccchhhHHHHHHHhhcCCCEEEEEecCCccccchhhhHHHHHHHhcCCEEEEeeHHHHHHHHh
Confidence 46899998653322233333344444456777776666443 11 111233455667888888854 777766654
No 201
>cd04924 ACT_AK-Arch_2 ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). Included in this CD is the second of two ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). The first or N-terminal ACT domain of these proteins cluster with the ThrA-like ACT 1 domains (ACT_AKi-HSDH-ThrA-like_1) which includes the threonine-sensitive archaeal Methanococcus jannaschii aspartokinase ACT 1 domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=30.96 E-value=1.3e+02 Score=18.45 Aligned_cols=31 Identities=16% Similarity=0.243 Sum_probs=22.5
Q ss_pred EEEEEeecCC-----chhHHHHHHHHhcCCceeEEe
Q 022475 36 TSYIGCIGKD-----KFGEEMKKNSTAAGVNVKYYE 66 (296)
Q Consensus 36 v~~~~~vG~D-----~~g~~i~~~l~~~gi~~~~~~ 66 (296)
+.+++.+|.. .....+.+.|.+.||+.+.+.
T Consensus 1 ~~~isivg~~~~~~~~~~~~i~~~L~~~~I~v~~i~ 36 (66)
T cd04924 1 VAVVAVVGSGMRGTPGVAGRVFGALGKAGINVIMIS 36 (66)
T ss_pred CeEEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEE
Confidence 3567777753 234568889999999999884
No 202
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=30.94 E-value=2.1e+02 Score=22.81 Aligned_cols=58 Identities=14% Similarity=0.045 Sum_probs=37.2
Q ss_pred hcceEEEEeccccccChHHHHHHHHHHhhCCCEEEEeCCchhhhhhhhHHHHhhcC-CCcEEEcC
Q 022475 111 EKAKYYYIAGFFLTVSPESIQMVAEHAAAKNKVFMMNLSAPFICEFFREPQEKALP-YMDYVFGN 174 (296)
Q Consensus 111 ~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~-~~dv~~~n 174 (296)
..+|++.+.+. .++..+.++++.+++.|+++.++...+.. ..+..+.+.+ .+|++.++
T Consensus 75 ~Gad~i~vh~~---~~~~~~~~~i~~~~~~g~~~~~~~~~~~t---~~~~~~~~~~~g~d~v~~~ 133 (206)
T TIGR03128 75 AGADIVTVLGV---ADDATIKGAVKAAKKHGKEVQVDLINVKD---KVKRAKELKELGADYIGVH 133 (206)
T ss_pred cCCCEEEEecc---CCHHHHHHHHHHHHHcCCEEEEEecCCCC---hHHHHHHHHHcCCCEEEEc
Confidence 46888887653 23456678899999999998877422211 1123344444 68999864
No 203
>PRK13600 putative ribosomal protein L7Ae-like; Provisional
Probab=30.27 E-value=1.5e+02 Score=20.19 Aligned_cols=37 Identities=19% Similarity=0.070 Sum_probs=29.1
Q ss_pred hcceEEEEeccccccChHHHHHHHHHHhhCCCEEEEeCCc
Q 022475 111 EKAKYYYIAGFFLTVSPESIQMVAEHAAAKNKVFMMNLSA 150 (296)
Q Consensus 111 ~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 150 (296)
.....+++.. ..++..+.++...|.++++++++-++.
T Consensus 28 g~~~~v~iA~---Da~~~vv~~l~~lceek~Ip~v~V~s~ 64 (84)
T PRK13600 28 DQVTSLIIAE---DVEVYLMTRVLSQINQKNIPVSFFKSK 64 (84)
T ss_pred CCceEEEEeC---CCCHHHHHHHHHHHHHcCCCEEEECCH
Confidence 3477888865 667788889999999999998877654
No 204
>PF11469 Ribonucleas_3_2: Ribonuclease III; InterPro: IPR021568 This archaeal family of proteins has no known function. ; PDB: 1ZTD_A.
Probab=29.89 E-value=56 Score=23.17 Aligned_cols=31 Identities=19% Similarity=0.251 Sum_probs=26.3
Q ss_pred ccCCCCCchhhhHHHHHHHhcC-CCHHHHHHH
Q 022475 243 LVDTNGAGDAFVGGFLSQLVQE-KPVEDCVRT 273 (296)
Q Consensus 243 vvd~tGaGDaf~ag~~~~l~~~-~~~~~a~~~ 273 (296)
-.|-.|-||..=|-++|+.++| .+.+||+..
T Consensus 52 R~dkh~kGd~aEA~iAyAWLeg~it~eEavei 83 (120)
T PF11469_consen 52 RTDKHGKGDIAEALIAYAWLEGKITIEEAVEI 83 (120)
T ss_dssp CGGCCGHHHHHHHHHHHHHHTTSS-HHHHHHH
T ss_pred cccccCccHHHHHHHHHHHHhccccHHHHHHH
Confidence 3688999999999999999998 689998865
No 205
>TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=29.84 E-value=4.1e+02 Score=23.79 Aligned_cols=38 Identities=18% Similarity=0.270 Sum_probs=27.3
Q ss_pred cceEEEEeccc-cccChHHHHHHHHHHhhCCCEEEEeCC
Q 022475 112 KAKYYYIAGFF-LTVSPESIQMVAEHAAAKNKVFMMNLS 149 (296)
Q Consensus 112 ~~~~~~i~g~~-~~~~~~~~~~~~~~~~~~~~~~~~d~~ 149 (296)
+.++++++... +......+..+.+.|+++|+.+++|-.
T Consensus 135 ~tklV~lesp~Np~g~~~dl~~I~~la~~~g~~livD~t 173 (377)
T TIGR01324 135 NTKVLFLEAPSSITFEIQDIPAIAKAARNPGIVIMIDNT 173 (377)
T ss_pred CceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECC
Confidence 46788876533 333456678888999999999888853
No 206
>PRK03673 hypothetical protein; Provisional
Probab=29.73 E-value=1.4e+02 Score=27.06 Aligned_cols=47 Identities=9% Similarity=0.029 Sum_probs=34.1
Q ss_pred HHHHHHHHHhhcCCCcEEEEEeecCCchhHHHHHHHHhcCCceeEEecC
Q 022475 20 QNSIKVAQWMLQIPGATSYIGCIGKDKFGEEMKKNSTAAGVNVKYYEDE 68 (296)
Q Consensus 20 ~n~a~~~~~l~~lg~~v~~~~~vG~D~~g~~i~~~l~~~gi~~~~~~~~ 68 (296)
.|....++.|..+|.++...+.+++| -+.|.+.+++..=..+.+...
T Consensus 21 tN~~~la~~L~~~G~~v~~~~~v~D~--~~~i~~~l~~a~~~~DlVI~t 67 (396)
T PRK03673 21 TNAAWLADFFFHQGLPLSRRNTVGDN--LDALVAILRERSQHADVLIVN 67 (396)
T ss_pred hHHHHHHHHHHHCCCEEEEEEEcCCC--HHHHHHHHHHHhccCCEEEEc
Confidence 46666666677788999999999998 566778887654445555443
No 207
>COG1660 Predicted P-loop-containing kinase [General function prediction only]
Probab=29.72 E-value=1.7e+02 Score=24.91 Aligned_cols=40 Identities=13% Similarity=0.360 Sum_probs=21.0
Q ss_pred hhhcceEEEEeccccccChHHHHHHHHHHhh-----CCCEEEEeCCchh
Q 022475 109 IVEKAKYYYIAGFFLTVSPESIQMVAEHAAA-----KNKVFMMNLSAPF 152 (296)
Q Consensus 109 ~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~-----~~~~~~~d~~~~~ 152 (296)
.+++..+++++ +++++.+-.+++.+.. ..+.++.|.|+..
T Consensus 20 ~lEDlGyycvD----NLPp~Llp~~~~~~~~~~~~~~kvAv~iDiRs~~ 64 (286)
T COG1660 20 VLEDLGYYCVD----NLPPQLLPKLADLMLTLESRITKVAVVIDVRSRE 64 (286)
T ss_pred HHHhcCeeeec----CCCHHHHHHHHHHHhhcccCCceEEEEEecccch
Confidence 35556666665 5566655555553321 1233666666543
No 208
>PRK08040 putative semialdehyde dehydrogenase; Provisional
Probab=29.47 E-value=4e+02 Score=23.55 Aligned_cols=94 Identities=15% Similarity=0.159 Sum_probs=50.0
Q ss_pred CcEEEEEeecCCchhHHHHHHHHhcCCceeEE--ecCCCCceeEEEEEeCCeeceeeccccccccCccccCChhhhhhhh
Q 022475 34 GATSYIGCIGKDKFGEEMKKNSTAAGVNVKYY--EDESAPTGTCAVCVVGGERSLVANLSAANCYKSEHLKRPEIWSIVE 111 (296)
Q Consensus 34 ~~v~~~~~vG~D~~g~~i~~~l~~~gi~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (296)
.++..+|.- ...|..+++.|.+.......+ ..+....|..+.. .+. .+..+.+.. ..+.
T Consensus 5 ~~vaIvGAT--G~vG~ellrlL~~~~hP~~~l~~laS~~saG~~~~~--~~~-----------~~~v~~~~~----~~~~ 65 (336)
T PRK08040 5 WNIALLGAT--GAVGEALLELLAERQFPVGELYALASEESAGETLRF--GGK-----------SVTVQDAAE----FDWS 65 (336)
T ss_pred CEEEEEccC--CHHHHHHHHHHhcCCCCceEEEEEEccCcCCceEEE--CCc-----------ceEEEeCch----hhcc
Confidence 556666654 457999999999842222222 1222233333321 111 121222221 1135
Q ss_pred cceEEEEeccccccChHHHHHHHHHHhhCCCEEEEeCCchh
Q 022475 112 KAKYYYIAGFFLTVSPESIQMVAEHAAAKNKVFMMNLSAPF 152 (296)
Q Consensus 112 ~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 152 (296)
+.|++++. .+.+...++...+.+.|++ ++|.+..+
T Consensus 66 ~~Dvvf~a-----~p~~~s~~~~~~~~~~g~~-VIDlS~~f 100 (336)
T PRK08040 66 QAQLAFFV-----AGREASAAYAEEATNAGCL-VIDSSGLF 100 (336)
T ss_pred CCCEEEEC-----CCHHHHHHHHHHHHHCCCE-EEECChHh
Confidence 68999884 3667777888877777775 45665443
No 209
>PRK14057 epimerase; Provisional
Probab=29.39 E-value=1.2e+02 Score=25.54 Aligned_cols=51 Identities=6% Similarity=0.021 Sum_probs=35.9
Q ss_pred cceEEEEeccccccChHHHHHHHHHHhhCCC-----------EEEEeCCchhhhhhhhHHHHhhcCCCcEEE
Q 022475 112 KAKYYYIAGFFLTVSPESIQMVAEHAAAKNK-----------VFMMNLSAPFICEFFREPQEKALPYMDYVF 172 (296)
Q Consensus 112 ~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~-----------~~~~d~~~~~~~~~~~~~~~~~l~~~dv~~ 172 (296)
.+|++.+.. +.. ..+...++..++.|+ -+.++|..+. +.++.+++.+|++.
T Consensus 98 Gad~It~H~---Ea~-~~~~~~l~~Ir~~G~k~~~~~~~~kaGlAlnP~Tp~------e~i~~~l~~vD~VL 159 (254)
T PRK14057 98 GAHCITLQA---EGD-IHLHHTLSWLGQQTVPVIGGEMPVIRGISLCPATPL------DVIIPILSDVEVIQ 159 (254)
T ss_pred CCCEEEEee---ccc-cCHHHHHHHHHHcCCCcccccccceeEEEECCCCCH------HHHHHHHHhCCEEE
Confidence 578887753 211 234667777888874 3889997765 66888899999775
No 210
>cd02752 MopB_Formate-Dh-Na-like Formate dehydrogenase N, alpha subunit (Formate-Dh-Na) is a major component of nitrate respiration in bacteria such as in the E. coli formate dehydrogenase N (Fdh-N). Fdh-N is a membrane protein that is a complex of three different subunits and is the major electron donor to the nitrate respiratory chain. Also included in this CD is the Desulfovibrio gigas tungsten formate dehydrogenase, DgW-FDH. In contrast to Fdh-N, which is a functional heterotrimer, DgW-FDH is a heterodimer. The DgW-FDH complex is composed of a large subunit carrying the W active site and one [4Fe-4S] center, and a small subunit that harbors a series of three [4Fe-4S] clusters as well as a putative vacant binding site for a fourth cluster. The smaller subunit is not included in this alignment. Members of the MopB_Formate-Dh-Na-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=29.36 E-value=1.7e+02 Score=28.53 Aligned_cols=43 Identities=16% Similarity=0.170 Sum_probs=27.1
Q ss_pred hhhcceEEEEeccccc-cChHHHHHHHHHHhhC-CC-EEEEeCCchh
Q 022475 109 IVEKAKYYYIAGFFLT-VSPESIQMVAEHAAAK-NK-VFMMNLSAPF 152 (296)
Q Consensus 109 ~~~~~~~~~i~g~~~~-~~~~~~~~~~~~~~~~-~~-~~~~d~~~~~ 152 (296)
.+.++|++++=|.+.. ..|.....+.+ ++++ |. .+++|++...
T Consensus 166 Di~nAd~Ili~GsNpae~hPv~~~~i~~-Ak~~~GaklIvVDPR~t~ 211 (649)
T cd02752 166 DIKNADVILVMGGNPAEAHPVSFKWILE-AKEKNGAKLIVVDPRFTR 211 (649)
T ss_pred HHhcCCEEEEECCChHHhCcHHHHHHHH-HHHcCCCeEEEEcCCCCc
Confidence 4678999999876643 23444444544 4544 64 4889997644
No 211
>cd02201 FtsZ_type1 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=29.28 E-value=2.9e+02 Score=23.92 Aligned_cols=67 Identities=13% Similarity=0.023 Sum_probs=35.6
Q ss_pred hhhhhhcceEEEEeccccc-cChHHHHHHHHHHhhCCCE---EEEeCCchh---hhhhhhHHHHhhcCCCcEEE
Q 022475 106 IWSIVEKAKYYYIAGFFLT-VSPESIQMVAEHAAAKNKV---FMMNLSAPF---ICEFFREPQEKALPYMDYVF 172 (296)
Q Consensus 106 ~~~~~~~~~~~~i~g~~~~-~~~~~~~~~~~~~~~~~~~---~~~d~~~~~---~~~~~~~~~~~~l~~~dv~~ 172 (296)
+.+.++++|.+++....-+ .-....-.+.+.+++.+.. ++..|.... ......+.++.+.+.+|.++
T Consensus 78 I~~~l~~~d~v~i~aglGGGTGSG~ap~ia~~a~e~g~~~~~vvt~Pf~~Eg~~~~~nA~~~l~~L~~~~d~~i 151 (304)
T cd02201 78 IKEALEGADMVFITAGMGGGTGTGAAPVIAKIAKEMGALTVAVVTKPFSFEGKKRMRQAEEGLEELRKHVDTLI 151 (304)
T ss_pred HHHHHhCCCEEEEeeccCCCcchhHHHHHHHHHHHcCCCEEEEEeCCccccchhHHHHHHHHHHHHHHhCCEEE
Confidence 4456788998888643222 2223333466677777753 222221111 11124455777778888877
No 212
>PRK07503 methionine gamma-lyase; Provisional
Probab=29.16 E-value=4e+02 Score=24.06 Aligned_cols=38 Identities=18% Similarity=0.151 Sum_probs=24.1
Q ss_pred cceEEEEeccc-cccChHHHHHHHHHHhhCCCEEEEeCC
Q 022475 112 KAKYYYIAGFF-LTVSPESIQMVAEHAAAKNKVFMMNLS 149 (296)
Q Consensus 112 ~~~~~~i~g~~-~~~~~~~~~~~~~~~~~~~~~~~~d~~ 149 (296)
+.++|+++... +......+..+.+.++++|+.++.|-.
T Consensus 150 ~tklV~le~p~NPtG~~~di~~I~~la~~~gi~lIvD~a 188 (403)
T PRK07503 150 KTRMVYFETPANPNMRLVDIAAVAEIAHGAGAKVVVDNT 188 (403)
T ss_pred cCcEEEEeCCCCCCCeeeCHHHHHHHHHHcCCEEEEECC
Confidence 56788875322 111222356788888888988888863
No 213
>TIGR02491 NrdG anaerobic ribonucleoside-triphosphate reductase activating protein. This enzyme is a member of the radical-SAM family (pfam04055) and utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin ) to produce a glycine-centered radical in the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487). The two components form an alpha-2/beta-2 heterodimer.
Probab=28.84 E-value=1.1e+02 Score=23.45 Aligned_cols=59 Identities=14% Similarity=0.064 Sum_probs=34.0
Q ss_pred eEEEEeccccccCh--HHHHHHHHHHhhC-CCEEEEeCCchhhhhhh-hHHHHhhcCCCcEEE
Q 022475 114 KYYYIAGFFLTVSP--ESIQMVAEHAAAK-NKVFMMNLSAPFICEFF-REPQEKALPYMDYVF 172 (296)
Q Consensus 114 ~~~~i~g~~~~~~~--~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~~-~~~~~~~l~~~dv~~ 172 (296)
..|.++|--+...+ +.+.++++.+++. +...+++.....+.+.. ....++++++.|+++
T Consensus 65 ~gVt~sGGEPllq~~~~~l~~ll~~~k~~~~~~~~~~~tG~~~~~~~~~~~~~~~l~~~D~li 127 (154)
T TIGR02491 65 DGLTLSGGDPLYPRNVEELIELVKKIKAEFPEKDIWLWTGYTWEEILEDEKHLEVLKYIDVLV 127 (154)
T ss_pred CeEEEeChhhCCCCCHHHHHHHHHHHHHhCCCCCEEEeeCccHHHHhcchhHHHHHhhCCEEE
Confidence 45666664444434 7888889988876 55544444443322211 112346889999765
No 214
>PF14252 DUF4347: Domain of unknown function (DUF4347)
Probab=28.67 E-value=2.3e+02 Score=22.08 Aligned_cols=62 Identities=11% Similarity=0.233 Sum_probs=34.6
Q ss_pred EEEeCCchhhhhhhhHHHHhhcCCCcEEEcCHHHHHHHHHHcCCCCCCHHHHHHHHhcCCCCCCCCceEEEEeeCCCcEE
Q 022475 144 FMMNLSAPFICEFFREPQEKALPYMDYVFGNETEARTFAKVHGWETDNVEEIALKISQWPKASGTHKRITVITQGADPVV 223 (296)
Q Consensus 144 ~~~d~~~~~~~~~~~~~~~~~l~~~dv~~~n~~E~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~vvvt~G~~G~~ 223 (296)
+++|.+-+. +...+..+.+.+.++.++.. .+.++++.+.|... ..-...-|+++|+.|.+
T Consensus 3 v~iD~~v~d----~~~L~~~l~~~~~v~~ld~~------------~d~~~qI~~~L~~~----~~i~~lhivsHG~~G~l 62 (165)
T PF14252_consen 3 VFIDSRVED----YESLLAGLPPGVEVVILDPS------------RDGLEQIAQALAGY----QNIDALHIVSHGSPGAL 62 (165)
T ss_pred EEEeCCCCC----HHHHHhcCcCCCEEEEEeCC------------CchHHHHHHHHhcC----CCCceEEEEcCCCcceE
Confidence 556665544 23334445566777776544 33455666666421 11124467788988887
Q ss_pred EE
Q 022475 224 VA 225 (296)
Q Consensus 224 ~~ 225 (296)
..
T Consensus 63 ~L 64 (165)
T PF14252_consen 63 QL 64 (165)
T ss_pred EE
Confidence 75
No 215
>cd02191 FtsZ FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=28.45 E-value=3.5e+02 Score=23.42 Aligned_cols=67 Identities=16% Similarity=0.088 Sum_probs=36.1
Q ss_pred hhhhhhcceEEEEecccc-ccChHHHHHHHHHHhhCCCE-EEEeCCchhh------hhhhhHHHHhhcCCCcEEEc
Q 022475 106 IWSIVEKAKYYYIAGFFL-TVSPESIQMVAEHAAAKNKV-FMMNLSAPFI------CEFFREPQEKALPYMDYVFG 173 (296)
Q Consensus 106 ~~~~~~~~~~~~i~g~~~-~~~~~~~~~~~~~~~~~~~~-~~~d~~~~~~------~~~~~~~~~~~l~~~dv~~~ 173 (296)
+.+.++.+|.|++....- ..-....-.+++.+++.+.. +.+-+. |+. .......++.+.+.+|.+++
T Consensus 78 I~~~le~~D~v~i~aglGGGTGSG~ap~ia~~~ke~~~~~~~vvt~-Pf~~Eg~~~~~NA~~~l~~L~~~~D~~iv 152 (303)
T cd02191 78 IDNIPVHVDMVFITAGLGGGTGTGGAPVVAEHLKRIGTLTVAVVTL-PFSDEGGIRMLNAAEGFQTLVREVDNLMV 152 (303)
T ss_pred HHHHHcCCCEEEEEeccCCccchhHHHHHHHHHHHhCCCEEEEEeC-CcccCCccchhhHHHHHHHHHHhCCEEEE
Confidence 345677888888864322 22234445566777776653 222221 111 11234557777788887773
No 216
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=28.44 E-value=2.5e+02 Score=20.81 Aligned_cols=91 Identities=26% Similarity=0.352 Sum_probs=45.3
Q ss_pred EEeecCCchhHHHHHHHHhcCCceeEEecCCCCceeEEEEEeCCeeceeeccccccccCccccCChhhhhhhhcceEEEE
Q 022475 39 IGCIGKDKFGEEMKKNSTAAGVNVKYYEDESAPTGTCAVCVVGGERSLVANLSAANCYKSEHLKRPEIWSIVEKAKYYYI 118 (296)
Q Consensus 39 ~~~vG~D~~g~~i~~~l~~~gi~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 118 (296)
++.+|....|.-+-..|++.|.....+....... .++. -.........+ ..+.+.++|++++
T Consensus 13 I~iIGaGrVG~~La~aL~~ag~~v~~v~srs~~s---------a~~a-~~~~~~~~~~~--------~~~~~~~aDlv~i 74 (127)
T PF10727_consen 13 IGIIGAGRVGTALARALARAGHEVVGVYSRSPAS---------AERA-AAFIGAGAILD--------LEEILRDADLVFI 74 (127)
T ss_dssp EEEECTSCCCCHHHHHHHHTTSEEEEESSCHH-H---------HHHH-HC--TT-------------TTGGGCC-SEEEE
T ss_pred EEEECCCHHHHHHHHHHHHCCCeEEEEEeCCccc---------cccc-ccccccccccc--------cccccccCCEEEE
Confidence 4555555678888899999887665442110000 0000 00000000111 1244678999999
Q ss_pred eccccccChHHHHHHHHHHhhC----CCEEEEeCCchh
Q 022475 119 AGFFLTVSPESIQMVAEHAAAK----NKVFMMNLSAPF 152 (296)
Q Consensus 119 ~g~~~~~~~~~~~~~~~~~~~~----~~~~~~d~~~~~ 152 (296)
+ .+++.+..+.+...+. .-++++-.+...
T Consensus 75 a-----vpDdaI~~va~~La~~~~~~~g~iVvHtSGa~ 107 (127)
T PF10727_consen 75 A-----VPDDAIAEVAEQLAQYGAWRPGQIVVHTSGAL 107 (127)
T ss_dssp ------S-CCHHHHHHHHHHCC--S-TT-EEEES-SS-
T ss_pred E-----echHHHHHHHHHHHHhccCCCCcEEEECCCCC
Confidence 4 5777888888877765 234666665544
No 217
>PRK09522 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional
Probab=26.72 E-value=5.6e+02 Score=24.34 Aligned_cols=41 Identities=5% Similarity=0.092 Sum_probs=23.3
Q ss_pred hhhcceEEEEeccccccChHHHHHHHHHHhhCCCEEEEeCCchh
Q 022475 109 IVEKAKYYYIAGFFLTVSPESIQMVAEHAAAKNKVFMMNLSAPF 152 (296)
Q Consensus 109 ~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 152 (296)
.+++..+.|+- .....| .+..++..-++.|++.+||.-.|.
T Consensus 339 ~l~~~g~~fl~--ap~~hp-am~~~~~~R~~Lg~rT~fN~lgpL 379 (531)
T PRK09522 339 ALDELGVCFLF--APKYHT-GFRHAMPVRQQLKTRTLFNVLGPL 379 (531)
T ss_pred HHHHhCcEEEE--hhHhCH-HHHHHHHHHHHhCCCcHHHHHHHh
Confidence 34455555542 122233 456677777778888877764444
No 218
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=26.61 E-value=3.7e+02 Score=25.23 Aligned_cols=57 Identities=19% Similarity=0.227 Sum_probs=36.6
Q ss_pred hcCCCcEEEEEeecCCchhHHHHHHHHhcCCceeEEecCCCCceeEEEEEeCCeeceeeccccc
Q 022475 30 LQIPGATSYIGCIGKDKFGEEMKKNSTAAGVNVKYYEDESAPTGTCAVCVVGGERSLVANLSAA 93 (296)
Q Consensus 30 ~~lg~~v~~~~~vG~D~~g~~i~~~l~~~gi~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~ 93 (296)
+|.|++|.|+|-+ .-+.+.+.|+++ .+.+.+. ..|+-.|-+...+|+...+.+++..
T Consensus 339 LGfGfRcGFLGlL----HmeiiqERLeRE-f~ldlI~--TaPsV~Y~v~~~~g~~~~i~NPs~~ 395 (603)
T COG0481 339 LGFGFRCGFLGLL----HMEIIQERLERE-FDLDLIT--TAPSVVYKVELTDGEEIEVDNPSDL 395 (603)
T ss_pred ccCceeehhhhHH----HHHHHHHHHHHh-hCcceEe--cCCceEEEEEEcCCcEEEecChHhC
Confidence 4667999999874 455566666653 3444442 3467777777778887766665533
No 219
>KOG1615 consensus Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=26.53 E-value=94 Score=25.12 Aligned_cols=98 Identities=14% Similarity=0.144 Sum_probs=54.9
Q ss_pred hhhhhhcceEEEEeccccccChHHHHHHHHHHhhCCC-----EEEEeCCchhhhhhhhHHHHhhcCCCcEEEcCHHHHHH
Q 022475 106 IWSIVEKAKYYYIAGFFLTVSPESIQMVAEHAAAKNK-----VFMMNLSAPFICEFFREPQEKALPYMDYVFGNETEART 180 (296)
Q Consensus 106 ~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~-----~~~~d~~~~~~~~~~~~~~~~~l~~~dv~~~n~~E~~~ 180 (296)
......++|.|+|+--+-.+..|-+.++...|....- ....+-..+ +++.+ -....++.++....+.
T Consensus 9 ~~~~~~~~~aVcFDvDSTvi~eEgIdelA~~~G~~~~Va~~T~rAMng~~~-----F~eaL---~~Rl~llqp~~~qv~~ 80 (227)
T KOG1615|consen 9 LAKLWRSADAVCFDVDSTVIQEEGIDELAAYCGVGEAVAEVTRRAMNGEAD-----FQEAL---AARLSLLQPLQVQVEQ 80 (227)
T ss_pred HHHHHHhcCeEEEecCcchhHHhhHHHHHHHhCchHHHHHHHHHHhCCCCc-----HHHHH---HHHHHHhcccHHHHHH
Confidence 3455678899999743333445666666655532110 011111111 22222 2345677788887766
Q ss_pred HHHH-c-CCCCCCHHHHHHHHhcCCCCCCCCceEEEEeeC
Q 022475 181 FAKV-H-GWETDNVEEIALKISQWPKASGTHKRITVITQG 218 (296)
Q Consensus 181 l~~~-~-~~~~~~~~~~~~~l~~~~~~~~~g~~~vvvt~G 218 (296)
+... + .. ....++++++| +.+|++..+++-|
T Consensus 81 ~v~~~k~~l-T~Gi~eLv~~L------~~~~~~v~liSGG 113 (227)
T KOG1615|consen 81 FVIKQKPTL-TPGIRELVSRL------HARGTQVYLISGG 113 (227)
T ss_pred HHhcCCCcc-CCCHHHHHHHH------HHcCCeEEEEcCC
Confidence 5432 2 22 35788999999 5788888887655
No 220
>PRK11145 pflA pyruvate formate lyase-activating enzyme 1; Provisional
Probab=26.44 E-value=1.9e+02 Score=23.89 Aligned_cols=59 Identities=8% Similarity=-0.056 Sum_probs=38.4
Q ss_pred eEEEEeccccccChHHHHHHHHHHhhCCCEEEEeCCchhhhhhhhHHHHhhcCCCcEEEcC
Q 022475 114 KYYYIAGFFLTVSPESIQMVAEHAAAKNKVFMMNLSAPFICEFFREPQEKALPYMDYVFGN 174 (296)
Q Consensus 114 ~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~dv~~~n 174 (296)
+.|.++|--+.+.++.+.++++.+++.|+.+.++...... ...+.++.+++..|.+.++
T Consensus 72 ~~V~~sGGEPll~~~~~~~l~~~~k~~g~~i~l~TNG~~~--~~~~~~~~ll~~~d~v~is 130 (246)
T PRK11145 72 GGVTASGGEAILQAEFVRDWFRACKKEGIHTCLDTNGFVR--RYDPVIDELLDVTDLVMLD 130 (246)
T ss_pred CeEEEeCccHhcCHHHHHHHHHHHHHcCCCEEEECCCCCC--cchHHHHHHHHhCCEEEEC
Confidence 3677776445566788888999999999887777644321 0124455666677866544
No 221
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=26.41 E-value=2.3e+02 Score=23.23 Aligned_cols=42 Identities=12% Similarity=0.238 Sum_probs=29.9
Q ss_pred ccChHHHHHHHHHHhhCC--CEEEEeCCchhhhhhhhHHHHhhcCCCcEEE
Q 022475 124 TVSPESIQMVAEHAAAKN--KVFMMNLSAPFICEFFREPQEKALPYMDYVF 172 (296)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~--~~~~~d~~~~~~~~~~~~~~~~~l~~~dv~~ 172 (296)
..++....+++..|+++. +|+.-|.+.|. ....+...+|++.
T Consensus 107 Efs~R~~reLl~~a~~R~Ni~PIL~DA~~P~-------~Y~~~Ve~VDviy 150 (231)
T COG1889 107 EFSPRPMRELLDVAEKRPNIIPILEDARKPE-------KYRHLVEKVDVIY 150 (231)
T ss_pred EecchhHHHHHHHHHhCCCceeeecccCCcH-------HhhhhcccccEEE
Confidence 456788889999888876 46788876654 2445667788776
No 222
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=26.41 E-value=3.7e+02 Score=22.11 Aligned_cols=37 Identities=16% Similarity=0.219 Sum_probs=31.3
Q ss_pred hcceEEEEeccccccChHHHHHHHHHHhhCCCEEEEeCCc
Q 022475 111 EKAKYYYIAGFFLTVSPESIQMVAEHAAAKNKVFMMNLSA 150 (296)
Q Consensus 111 ~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 150 (296)
..+||+.+.| ..+.+++...++.+++.|+.+..|.-.
T Consensus 79 aGAd~~tV~g---~A~~~TI~~~i~~A~~~~~~v~iDl~~ 115 (217)
T COG0269 79 AGADWVTVLG---AADDATIKKAIKVAKEYGKEVQIDLIG 115 (217)
T ss_pred cCCCEEEEEe---cCCHHHHHHHHHHHHHcCCeEEEEeec
Confidence 5799999987 456789999999999999998888743
No 223
>PRK06444 prephenate dehydrogenase; Provisional
Probab=25.97 E-value=3.5e+02 Score=21.76 Aligned_cols=23 Identities=26% Similarity=0.362 Sum_probs=17.6
Q ss_pred EeecC-CchhHHHHHHHHhcCCce
Q 022475 40 GCIGK-DKFGEEMKKNSTAAGVNV 62 (296)
Q Consensus 40 ~~vG~-D~~g~~i~~~l~~~gi~~ 62 (296)
+.+|. ...|+++.+.+++.|...
T Consensus 4 ~iiG~~G~mG~~~~~~~~~~g~~v 27 (197)
T PRK06444 4 IIIGKNGRLGRVLCSILDDNGLGV 27 (197)
T ss_pred EEEecCCcHHHHHHHHHHhCCCEE
Confidence 34443 568999999999999765
No 224
>PRK07504 O-succinylhomoserine sulfhydrylase; Reviewed
Probab=25.82 E-value=4.5e+02 Score=23.71 Aligned_cols=39 Identities=15% Similarity=0.170 Sum_probs=24.7
Q ss_pred hcceEEEEeccc-cccChHHHHHHHHHHhhCCCEEEEeCC
Q 022475 111 EKAKYYYIAGFF-LTVSPESIQMVAEHAAAKNKVFMMNLS 149 (296)
Q Consensus 111 ~~~~~~~i~g~~-~~~~~~~~~~~~~~~~~~~~~~~~d~~ 149 (296)
.+.++|+++... +....-.+.++.+.++++|+.+++|-.
T Consensus 149 ~~tklV~lesp~NptG~v~dl~~I~~la~~~gi~lvvD~a 188 (398)
T PRK07504 149 PNTKVFFLESPTNPTLEVIDIAAVAKIANQAGAKLVVDNV 188 (398)
T ss_pred cCceEEEEECCCCCCcEecCHHHHHHHHHHcCCEEEEECC
Confidence 356788876533 111112356777888888988888864
No 225
>PF11019 DUF2608: Protein of unknown function (DUF2608); InterPro: IPR022565 This family is conserved in Bacteria. The function is not known.
Probab=25.34 E-value=4.1e+02 Score=22.31 Aligned_cols=39 Identities=5% Similarity=0.010 Sum_probs=29.1
Q ss_pred HHHhhcCCCcEEEEEeecCCchhHHHHHHHHhcCCceeEE
Q 022475 26 AQWMLQIPGATSYIGCIGKDKFGEEMKKNSTAAGVNVKYY 65 (296)
Q Consensus 26 ~~~l~~lg~~v~~~~~vG~D~~g~~i~~~l~~~gi~~~~~ 65 (296)
++.|...|.+|.-++..+.+ .-....+.|++.||+.+..
T Consensus 90 i~~lq~~~~~v~alT~~~~~-~~~~t~~~Lk~~gi~fs~~ 128 (252)
T PF11019_consen 90 INSLQNKGIPVIALTARGPN-MEDWTLRELKSLGIDFSSS 128 (252)
T ss_pred HHHHHHCCCcEEEEcCCChh-hHHHHHHHHHHCCCCcccc
Confidence 33344456889999998876 6667778999999988754
No 226
>PRK06234 methionine gamma-lyase; Provisional
Probab=25.17 E-value=5.1e+02 Score=23.34 Aligned_cols=37 Identities=14% Similarity=0.173 Sum_probs=19.3
Q ss_pred cceEEEEeccc-cccChHHHHHHHHHHhhC--CCEEEEeC
Q 022475 112 KAKYYYIAGFF-LTVSPESIQMVAEHAAAK--NKVFMMNL 148 (296)
Q Consensus 112 ~~~~~~i~g~~-~~~~~~~~~~~~~~~~~~--~~~~~~d~ 148 (296)
+.++++++..+ +......+.++.+.+++. ++.++.|-
T Consensus 149 ~tklI~iesP~NPtG~v~dl~~I~~la~~~~~~i~livDe 188 (400)
T PRK06234 149 NTKVVYLETPANPTLKVTDIKAISNIAHENNKECLVFVDN 188 (400)
T ss_pred CCeEEEEECCCCCCCCcCCHHHHHHHHHhcCCCCEEEEEC
Confidence 45667765422 111112245666666664 67776664
No 227
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=25.04 E-value=2.7e+02 Score=22.13 Aligned_cols=64 Identities=14% Similarity=0.122 Sum_probs=27.7
Q ss_pred ceEEEEeccccccChHHHHHHHHHHhhCCCE-EEEeCCchhhh----hhhhHHHHhhcCCCcEEE-cCHHHHHHHH
Q 022475 113 AKYYYIAGFFLTVSPESIQMVAEHAAAKNKV-FMMNLSAPFIC----EFFREPQEKALPYMDYVF-GNETEARTFA 182 (296)
Q Consensus 113 ~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~-~~~d~~~~~~~----~~~~~~~~~~l~~~dv~~-~n~~E~~~l~ 182 (296)
.+++++-. .+++| .++..++++|++ +.+|-+.+..+ .......+.+++..|.|. -++++++.+.
T Consensus 96 P~~~i~~E--tElWP----nll~~a~~~~ip~~LvNarls~~s~~~~~~~~~~~r~~l~~f~~i~aqs~~da~r~~ 165 (186)
T PF04413_consen 96 PDLLIWVE--TELWP----NLLREAKRRGIPVVLVNARLSERSFRRYRRFPFLFRPLLSRFDRILAQSEADAERFR 165 (186)
T ss_dssp -SEEEEES------H----HHHHH-----S-EEEEEE--------------HHHHHHGGG-SEEEESSHHHHHHHH
T ss_pred CCEEEEEc--cccCH----HHHHHHhhcCCCEEEEeeeeccccchhhhhhHHHHHHHHHhCCEEEECCHHHHHHHH
Confidence 35555532 14455 477778889987 56776544322 224556778889889887 5666666553
No 228
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=25.00 E-value=85 Score=29.12 Aligned_cols=194 Identities=14% Similarity=0.083 Sum_probs=100.6
Q ss_pred CCCceeecCChhHHHHHHHHHhhcCCCcEEEEEeecCCchhHHHHHHHHhcCCceeEEecCCCCceeEEEEEeCCeecee
Q 022475 8 KENVEYIAGGATQNSIKVAQWMLQIPGATSYIGCIGKDKFGEEMKKNSTAAGVNVKYYEDESAPTGTCAVCVVGGERSLV 87 (296)
Q Consensus 8 ~~~~~~~~GG~~~n~a~~~~~l~~lg~~v~~~~~vG~D~~g~~i~~~l~~~gi~~~~~~~~~~~t~~~~~~~~~~~~~~~ 87 (296)
..+.+..+||.-+|-.+.+.- ..=...+-+|.+..|+.-+-.+- .|+ .... .|..+ -+|+..-+
T Consensus 7 ~~~itK~f~~~~And~V~l~v-----~~GeIHaLLGENGAGKSTLm~iL-~G~----~~P~---~GeI~---v~G~~v~~ 70 (501)
T COG3845 7 MRGITKRFPGVVANDDVSLSV-----KKGEIHALLGENGAGKSTLMKIL-FGL----YQPD---SGEIR---VDGKEVRI 70 (501)
T ss_pred EeccEEEcCCEEecCceeeee-----cCCcEEEEeccCCCCHHHHHHHH-hCc----ccCC---cceEE---ECCEEecc
Confidence 345667777887776665552 12356678899988866543221 222 2111 11111 14544434
Q ss_pred eccccccccC----ccccCChhhhhhhhcceEEEEeccc---cccC-hHHHHHHHHHHhhCCCEEEEeCCchhh---hhh
Q 022475 88 ANLSAANCYK----SEHLKRPEIWSIVEKAKYYYIAGFF---LTVS-PESIQMVAEHAAAKNKVFMMNLSAPFI---CEF 156 (296)
Q Consensus 88 ~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~i~g~~---~~~~-~~~~~~~~~~~~~~~~~~~~d~~~~~~---~~~ 156 (296)
.++....... .++... .+.+.-.+-++++.-. ..++ ...-.++.+...+.|.++.+|-.-... .+.
T Consensus 71 ~sP~dA~~~GIGMVhQHF~L---v~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQ 147 (501)
T COG3845 71 KSPRDAIRLGIGMVHQHFML---VPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQ 147 (501)
T ss_pred CCHHHHHHcCCcEEeecccc---ccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchhH
Confidence 3333221111 111110 0111222223332210 1112 244556667777788776655432222 244
Q ss_pred hhHHHHhhcCCCcEEEcCHHHHHHHHHHcCCCCCCHHHHHHHHhcCCCCCCCCceEEEEeeC-------CCcEEEEECCe
Q 022475 157 FREPQEKALPYMDYVFGNETEARTFAKVHGWETDNVEEIALKISQWPKASGTHKRITVITQG-------ADPVVVAEDGK 229 (296)
Q Consensus 157 ~~~~~~~~l~~~dv~~~n~~E~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~vvvt~G-------~~G~~~~~~~~ 229 (296)
..|.++.++..++++++.+-.+- +++...++++..+.++ ...|...++||+- .+-+-+.+.|+
T Consensus 148 RVEIlKaLyr~a~iLILDEPTaV-------LTP~E~~~lf~~l~~l---~~~G~tIi~ITHKL~Ev~~iaDrvTVLR~Gk 217 (501)
T COG3845 148 RVEILKALYRGARLLILDEPTAV-------LTPQEADELFEILRRL---AAEGKTIIFITHKLKEVMAIADRVTVLRRGK 217 (501)
T ss_pred HHHHHHHHhcCCCEEEEcCCccc-------CCHHHHHHHHHHHHHH---HHCCCEEEEEeccHHHHHHhhCeeEEEeCCe
Confidence 67788889999999998766332 1234455566555544 5788888899875 35566667776
Q ss_pred E
Q 022475 230 V 230 (296)
Q Consensus 230 ~ 230 (296)
.
T Consensus 218 v 218 (501)
T COG3845 218 V 218 (501)
T ss_pred E
Confidence 4
No 229
>cd04922 ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the second of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathwa
Probab=24.60 E-value=1.8e+02 Score=17.86 Aligned_cols=30 Identities=17% Similarity=0.247 Sum_probs=21.5
Q ss_pred EEEEeecCC-----chhHHHHHHHHhcCCceeEEe
Q 022475 37 SYIGCIGKD-----KFGEEMKKNSTAAGVNVKYYE 66 (296)
Q Consensus 37 ~~~~~vG~D-----~~g~~i~~~l~~~gi~~~~~~ 66 (296)
.+++.+|.+ .....+.+.|.+.||+.+.+.
T Consensus 2 ~~isvvg~~~~~~~~~~~~i~~~l~~~~I~v~~i~ 36 (66)
T cd04922 2 SILALVGDGMAGTPGVAATFFSALAKANVNIRAIA 36 (66)
T ss_pred eEEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEE
Confidence 455666642 345668889999999998874
No 230
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=24.59 E-value=2.3e+02 Score=23.18 Aligned_cols=44 Identities=18% Similarity=0.284 Sum_probs=26.0
Q ss_pred eecCChhHHHHHHHHHhhcCCCcEEEEEeecCCchhHHHHHHHHhcCCce
Q 022475 13 YIAGGATQNSIKVAQWMLQIPGATSYIGCIGKDKFGEEMKKNSTAAGVNV 62 (296)
Q Consensus 13 ~~~GG~~~n~a~~~~~l~~lg~~v~~~~~vG~D~~g~~i~~~l~~~gi~~ 62 (296)
..=.|+|+++|+.++ +.+ +|.-+=.+ ....+.-++.|+..|+..
T Consensus 78 EIGtGsGY~aAvla~-l~~---~V~siEr~--~~L~~~A~~~L~~lg~~n 121 (209)
T COG2518 78 EIGTGSGYQAAVLAR-LVG---RVVSIERI--EELAEQARRNLETLGYEN 121 (209)
T ss_pred EECCCchHHHHHHHH-HhC---eEEEEEEc--HHHHHHHHHHHHHcCCCc
Confidence 345688899887666 433 33333222 235566677788888844
No 231
>PF05906 DUF865: Herpesvirus-7 repeat of unknown function (DUF865)
Probab=24.54 E-value=7.4 Score=20.48 Aligned_cols=16 Identities=44% Similarity=0.684 Sum_probs=13.3
Q ss_pred cccCCCCCchhhhHHH
Q 022475 242 KLVDTNGAGDAFVGGF 257 (296)
Q Consensus 242 ~vvd~tGaGDaf~ag~ 257 (296)
++|.+||..=.|.|||
T Consensus 20 kpvkttgtavvfsagf 35 (35)
T PF05906_consen 20 KPVKTTGTAVVFSAGF 35 (35)
T ss_pred eeeeccceEEEeeccC
Confidence 6788999888888875
No 232
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=24.43 E-value=1.7e+02 Score=25.79 Aligned_cols=27 Identities=15% Similarity=0.214 Sum_probs=19.1
Q ss_pred CcEEEEEeecCCchhHHHHHHHHhcCCcee
Q 022475 34 GATSYIGCIGKDKFGEEMKKNSTAAGVNVK 63 (296)
Q Consensus 34 ~~v~~~~~vG~D~~g~~i~~~l~~~gi~~~ 63 (296)
.+|.++| -...|..+.+.|...||..-
T Consensus 25 ~~VlIiG---~GglGs~va~~La~aGvg~i 51 (338)
T PRK12475 25 KHVLIVG---AGALGAANAEALVRAGIGKL 51 (338)
T ss_pred CcEEEEC---CCHHHHHHHHHHHHcCCCEE
Confidence 4555554 34588999999999998543
No 233
>PF11167 DUF2953: Protein of unknown function (DUF2953); InterPro: IPR021338 This family of proteins has no known function.
Probab=24.42 E-value=56 Score=19.81 Aligned_cols=17 Identities=41% Similarity=0.429 Sum_probs=15.4
Q ss_pred CCCchhhhHHHHHHHhc
Q 022475 247 NGAGDAFVGGFLSQLVQ 263 (296)
Q Consensus 247 tGaGDaf~ag~~~~l~~ 263 (296)
.|.+|+...|+++|++.
T Consensus 3 ~G~~Daa~Tgi~~G~l~ 19 (53)
T PF11167_consen 3 IGLGDAADTGILYGLLW 19 (53)
T ss_pred eeccCHHHHHHHHHHHH
Confidence 58999999999999876
No 234
>TIGR02495 NrdG2 anaerobic ribonucleoside-triphosphate reductase activating protein. This enzyme is a member of the radical-SAM family (pfam04055). It is often gene clustered with the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487) and presumably fulfills the identical function as NrdG which utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin) to produce a glycine-centered radical in NrdD.
Probab=24.39 E-value=3.5e+02 Score=21.16 Aligned_cols=37 Identities=8% Similarity=-0.059 Sum_probs=24.8
Q ss_pred ceEEEEeccccccChHHHHHHHHHHhhCCCEEEEeCCc
Q 022475 113 AKYYYIAGFFLTVSPESIQMVAEHAAAKNKVFMMNLSA 150 (296)
Q Consensus 113 ~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 150 (296)
.+.+.++|--+.+.++ +.++++.+++.|..+.+....
T Consensus 63 ~~~i~~sGGEPll~~~-l~~li~~~~~~g~~v~i~TNg 99 (191)
T TIGR02495 63 IDGVVITGGEPTLQAG-LPDFLRKVRELGFEVKLDTNG 99 (191)
T ss_pred CCeEEEECCcccCcHh-HHHHHHHHHHCCCeEEEEeCC
Confidence 3466676633444556 778888888888877666544
No 235
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=24.12 E-value=3.7e+02 Score=22.69 Aligned_cols=60 Identities=13% Similarity=0.038 Sum_probs=43.3
Q ss_pred hhcceEEEEeccccccChHHHHHHHHHHhhCCCEEEEeCCchhhhhhhhHHHHhhcC-CCcEEEcCHHHH
Q 022475 110 VEKAKYYYIAGFFLTVSPESIQMVAEHAAAKNKVFMMNLSAPFICEFFREPQEKALP-YMDYVFGNETEA 178 (296)
Q Consensus 110 ~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~-~~dv~~~n~~E~ 178 (296)
...+|++++.+.. .+++.+.++++.++..|..+.+|..... + ++.... .+|++-.|...+
T Consensus 131 ~~GAD~VlLi~~~--l~~~~l~~li~~a~~lGl~~lvevh~~~------E-~~~A~~~gadiIgin~rdl 191 (260)
T PRK00278 131 AAGADAILLIVAA--LDDEQLKELLDYAHSLGLDVLVEVHDEE------E-LERALKLGAPLIGINNRNL 191 (260)
T ss_pred HcCCCEEEEEecc--CCHHHHHHHHHHHHHcCCeEEEEeCCHH------H-HHHHHHcCCCEEEECCCCc
Confidence 4578999998644 3567899999999999999999987643 2 222333 589988775433
No 236
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy
Probab=23.85 E-value=2e+02 Score=18.64 Aligned_cols=31 Identities=23% Similarity=0.082 Sum_probs=19.7
Q ss_pred HHHHHHHhcCCceeEEe-cCCC-CceeEEEEEe
Q 022475 50 EMKKNSTAAGVNVKYYE-DESA-PTGTCAVCVV 80 (296)
Q Consensus 50 ~i~~~l~~~gi~~~~~~-~~~~-~t~~~~~~~~ 80 (296)
.+++.++++||+...+. .|.. ....+...+|
T Consensus 16 ~vL~~f~~~~iNlt~IeSRP~~~~~~~y~Ffvd 48 (74)
T cd04904 16 RALKLFEEFGVNLTHIESRPSRRNGSEYEFFVD 48 (74)
T ss_pred HHHHHHHHCCCcEEEEECCCCCCCCceEEEEEE
Confidence 45678889999999985 3332 2334444444
No 237
>PRK13601 putative L7Ae-like ribosomal protein; Provisional
Probab=23.65 E-value=2.4e+02 Score=19.10 Aligned_cols=35 Identities=14% Similarity=0.056 Sum_probs=26.0
Q ss_pred hcceEEEEeccccccChHHHHHHHHHHhhCCCEEEEeC
Q 022475 111 EKAKYYYIAGFFLTVSPESIQMVAEHAAAKNKVFMMNL 148 (296)
Q Consensus 111 ~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 148 (296)
.++.+|++.. ..+++....+...|...++|+.+..
T Consensus 23 gkakLViiA~---Da~~~~~k~i~~~c~~~~Vpv~~~~ 57 (82)
T PRK13601 23 CNVLQVYIAK---DAEEHVTKKIKELCEEKSIKIVYID 57 (82)
T ss_pred CCeeEEEEeC---CCCHHHHHHHHHHHHhCCCCEEEeC
Confidence 4577787764 6677888888888888888876554
No 238
>PLN02409 serine--glyoxylate aminotransaminase
Probab=23.52 E-value=5.4e+02 Score=23.08 Aligned_cols=50 Identities=12% Similarity=0.033 Sum_probs=27.5
Q ss_pred eecCChhHHHHHHHHHhhcCCCcEEEEEeecCCchhHHHHHHHHhcCCceeEEe
Q 022475 13 YIAGGATQNSIKVAQWMLQIPGATSYIGCIGKDKFGEEMKKNSTAAGVNVKYYE 66 (296)
Q Consensus 13 ~~~GG~~~n~a~~~~~l~~lg~~v~~~~~vG~D~~g~~i~~~l~~~gi~~~~~~ 66 (296)
..-+|.+.+.+.... ++..|.++. +... +.++..+.+.++..|++...+.
T Consensus 65 ~~~~gt~a~~~a~~~-~~~~Gd~Vl-v~~~--~~~~~~~~~~~~~~g~~v~~v~ 114 (401)
T PLN02409 65 FPTTGTGAWESALTN-TLSPGDKVV-SFRI--GQFSLLWIDQMQRLNFDVDVVE 114 (401)
T ss_pred EeCCcHHHHHHHHHh-cCCCCCEEE-EeCC--CchhHHHHHHHHHcCCceEEEE
Confidence 334555555443333 455555544 3332 3356666677777888777664
No 239
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=23.26 E-value=4.7e+02 Score=23.14 Aligned_cols=26 Identities=8% Similarity=0.199 Sum_probs=15.6
Q ss_pred HHHHHHHHhcCCCCCCCCceEEEEeeCCCcEEE
Q 022475 192 VEEIALKISQWPKASGTHKRITVITQGADPVVV 224 (296)
Q Consensus 192 ~~~~~~~l~~~~~~~~~g~~~vvvt~G~~G~~~ 224 (296)
.+.++..+ +..|. .+++-+|++-..+
T Consensus 256 ~~aai~a~------r~gGt-~vlvg~g~~~~~f 281 (354)
T KOG0024|consen 256 IRAAIKAT------RSGGT-VVLVGMGAEEIQF 281 (354)
T ss_pred HHHHHHHh------ccCCE-EEEeccCCCcccc
Confidence 44555555 45565 6777788765443
No 240
>COG2321 Predicted metalloprotease [General function prediction only]
Probab=23.12 E-value=1.3e+02 Score=25.60 Aligned_cols=38 Identities=13% Similarity=0.250 Sum_probs=32.1
Q ss_pred chhhhHHHHHHHh-----cCCCHHHHHHHhhHHhhhhhhhccC
Q 022475 250 GDAFVGGFLSQLV-----QEKPVEDCVRTGCYAANVVIQRSGC 287 (296)
Q Consensus 250 GDaf~ag~~~~l~-----~~~~~~~a~~~A~~~aa~~~~~~G~ 287 (296)
-|+|++.+.+... +..++++|+-.|.+.+--.+++...
T Consensus 212 ADCfAGVW~~~~~q~~~Le~gDleeAlnAA~aiGDD~lQ~~~~ 254 (295)
T COG2321 212 ADCFAGVWANYVQQKGLLETGDLEEALNAAHAIGDDRLQQQSQ 254 (295)
T ss_pred hhHHHHHHHHHhcCCCCCccchHHHHHHHHHHhcccHHHHhcc
Confidence 5889998888764 4578999999999999999998765
No 241
>COG1058 CinA Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]
Probab=22.73 E-value=2.6e+02 Score=23.61 Aligned_cols=74 Identities=11% Similarity=0.105 Sum_probs=45.6
Q ss_pred CchhHHHHHHHHhcCCceeEEe-cCCCCceeEEEEEeCCeeceeeccccccccCccccCChhhhhhhhcceEEEEecccc
Q 022475 45 DKFGEEMKKNSTAAGVNVKYYE-DESAPTGTCAVCVVGGERSLVANLSAANCYKSEHLKRPEIWSIVEKAKYYYIAGFFL 123 (296)
Q Consensus 45 D~~g~~i~~~l~~~gi~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~ 123 (296)
|..+.+|-+.|.+.|++..++. +.+ .. +.+.. .+....+++|+++++|-.-
T Consensus 20 dtNa~~la~~L~~~G~~v~~~~~VgD------------~~---------------~~I~~-~l~~a~~r~D~vI~tGGLG 71 (255)
T COG1058 20 DTNAAFLADELTELGVDLARITTVGD------------NP---------------DRIVE-ALREASERADVVITTGGLG 71 (255)
T ss_pred cchHHHHHHHHHhcCceEEEEEecCC------------CH---------------HHHHH-HHHHHHhCCCEEEECCCcC
Confidence 5689999999999999998764 221 11 11111 1223456699999998554
Q ss_pred ccChHHHHHHHHHHhhCCCEEEEeC
Q 022475 124 TVSPESIQMVAEHAAAKNKVFMMNL 148 (296)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~d~ 148 (296)
...++...+.+. +..|.++.+|.
T Consensus 72 PT~DDiT~e~vA--ka~g~~lv~~~ 94 (255)
T COG1058 72 PTHDDLTAEAVA--KALGRPLVLDE 94 (255)
T ss_pred CCccHhHHHHHH--HHhCCCcccCH
Confidence 455565555444 33455666663
No 242
>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional
Probab=22.68 E-value=4e+02 Score=24.15 Aligned_cols=57 Identities=14% Similarity=-0.044 Sum_probs=38.1
Q ss_pred hcceEEEEeccccccChHHHHHHHHHHhhCCCEEEEeCCchhhhhhhhHHHHhhcCCCcEEEc
Q 022475 111 EKAKYYYIAGFFLTVSPESIQMVAEHAAAKNKVFMMNLSAPFICEFFREPQEKALPYMDYVFG 173 (296)
Q Consensus 111 ~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~dv~~~ 173 (296)
..+|++.+.+ ....+.+...++.+++.|+.+.+|.-.+.- ..+.++.++...|++.+
T Consensus 249 aGAD~vTVH~---ea~~~ti~~ai~~akk~GikvgVD~lnp~t---p~e~i~~l~~~vD~Vll 305 (391)
T PRK13307 249 ATADAVVISG---LAPISTIEKAIHEAQKTGIYSILDMLNVED---PVKLLESLKVKPDVVEL 305 (391)
T ss_pred cCCCEEEEec---cCCHHHHHHHHHHHHHcCCEEEEEEcCCCC---HHHHHHHhhCCCCEEEE
Confidence 3578888875 335567888999999999988776322210 12445566667888763
No 243
>PLN02509 cystathionine beta-lyase
Probab=22.63 E-value=6.3e+02 Score=23.49 Aligned_cols=38 Identities=18% Similarity=0.220 Sum_probs=27.3
Q ss_pred cceEEEEeccc-cccChHHHHHHHHHHhhCCCEEEEeCC
Q 022475 112 KAKYYYIAGFF-LTVSPESIQMVAEHAAAKNKVFMMNLS 149 (296)
Q Consensus 112 ~~~~~~i~g~~-~~~~~~~~~~~~~~~~~~~~~~~~d~~ 149 (296)
+.++++++... +......+..+.+.|+++|+.+++|-.
T Consensus 217 ~TklV~lesPsNPtG~i~Dl~~I~~lAk~~g~~lIVD~A 255 (464)
T PLN02509 217 QTKLVWLESPTNPRQQISDIRKIAEMAHAQGALVLVDNS 255 (464)
T ss_pred CCeEEEEECCCCCCCCHHHHHHHHHHHHHcCCEEEEECC
Confidence 46788877543 233345678888999999999988864
No 244
>cd01408 SIRT1 SIRT1: Eukaryotic group (class1) which includes human sirtuins SIRT1-3 and yeast Hst1-4; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, and life span. The most-studied function, gene silencing, involves the inactivation of chromosome domains containing key regulatory genes by packaging them into a specialized chromatin structure that is inaccessible to DNA-binding proteins. The nuclear SIRT1 has been shown to target the p53 tumor suppressor protein for deacetylation to suppress DNA damage, and the cytoplasmic SIRT2 homolog has been shown to target alpha-tubulin for deacetylation for the maintenance of cell integrity.
Probab=22.31 E-value=3.8e+02 Score=22.17 Aligned_cols=40 Identities=18% Similarity=0.205 Sum_probs=22.0
Q ss_pred hhhcceEEEEeccccccChHHHHHHHHHHhhCCCEEEEeCCc
Q 022475 109 IVEKAKYYYIAGFFLTVSPESIQMVAEHAAAKNKVFMMNLSA 150 (296)
Q Consensus 109 ~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 150 (296)
.+.++|++++=|.++.+.|. ..+.+.+++....+++|+.+
T Consensus 172 ~~~~aDlllvvGTSl~V~pa--~~l~~~~~~~~~~v~iN~~~ 211 (235)
T cd01408 172 DKEEADLLIVIGTSLKVAPF--ASLPSRVPSEVPRVLINREP 211 (235)
T ss_pred HHhcCCEEEEECCCCeeccH--HHHHHHHhCCCcEEEEeCCC
Confidence 35567777777655555552 23444444333446677653
No 245
>cd04915 ACT_AK-Ectoine_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and various other halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinas
Probab=22.04 E-value=2.2e+02 Score=18.00 Aligned_cols=43 Identities=14% Similarity=0.081 Sum_probs=27.9
Q ss_pred EEEEEeecCCc----hhHHHHHHHHhcCCceeEEecCCCCceeEEEE
Q 022475 36 TSYIGCIGKDK----FGEEMKKNSTAAGVNVKYYEDESAPTGTCAVC 78 (296)
Q Consensus 36 v~~~~~vG~D~----~g~~i~~~l~~~gi~~~~~~~~~~~t~~~~~~ 78 (296)
+..++.+|++. ....+.+.|.+.||+...+.....+...++++
T Consensus 2 ~a~VsvVG~gm~~~gv~~ki~~~L~~~~I~v~~i~~~~s~~~is~~V 48 (66)
T cd04915 2 VAIVSVIGRDLSTPGVLARGLAALAEAGIEPIAAHQSMRNVDVQFVV 48 (66)
T ss_pred EEEEEEECCCCCcchHHHHHHHHHHHCCCCEEEEEecCCeeEEEEEE
Confidence 56788888643 34567778899999997765443344444433
No 246
>cd02812 PcrB_like PcrB_like proteins. One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.
Probab=21.79 E-value=2.1e+02 Score=23.53 Aligned_cols=50 Identities=16% Similarity=0.075 Sum_probs=32.0
Q ss_pred hcceEEEEeccccccChHHHHHHHHHHhhC--CCEEEEeCCchhhhhhhhHHHHhhcCCCcEEE
Q 022475 111 EKAKYYYIAGFFLTVSPESIQMVAEHAAAK--NKVFMMNLSAPFICEFFREPQEKALPYMDYVF 172 (296)
Q Consensus 111 ~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~--~~~~~~d~~~~~~~~~~~~~~~~~l~~~dv~~ 172 (296)
...|.+.++|.. ++. +.....++..++. .+|+++.|+.+. .+-+.+|.++
T Consensus 24 ~gtdai~vGGS~-~v~-~~~~~~~~~ik~~~~~~Pvilfp~~~~----------~i~~~aDa~l 75 (219)
T cd02812 24 SGTDAIMVGGSD-GVS-STLDNVVRLIKRIRRPVPVILFPSNPE----------AVSPGADAYL 75 (219)
T ss_pred cCCCEEEECCcc-chh-hhHHHHHHHHHHhcCCCCEEEeCCCcc----------ccCcCCCEEE
Confidence 457999999854 332 4444444444433 488998987754 4567788776
No 247
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=21.66 E-value=3.8e+02 Score=21.71 Aligned_cols=97 Identities=12% Similarity=0.172 Sum_probs=49.8
Q ss_pred ceeecCChhHHHHHHHHHhhcCCCcEEEEEeecCCchhHHHHHHHHhcCCceeEEecCCCCceeEEEEEeCCeeceeecc
Q 022475 11 VEYIAGGATQNSIKVAQWMLQIPGATSYIGCIGKDKFGEEMKKNSTAAGVNVKYYEDESAPTGTCAVCVVGGERSLVANL 90 (296)
Q Consensus 11 ~~~~~GG~~~n~a~~~~~l~~lg~~v~~~~~vG~D~~g~~i~~~l~~~gi~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~ 90 (296)
.-....|.|.|.=..+...-+-..++.....+.+. ....-++.-++.||.+..+...+.+ .|.
T Consensus 3 i~VlaSG~GSNlqaiida~~~~~~~a~i~~Visd~-~~A~~lerA~~~gIpt~~~~~k~~~-----------~r~----- 65 (200)
T COG0299 3 IAVLASGNGSNLQAIIDAIKGGKLDAEIVAVISDK-ADAYALERAAKAGIPTVVLDRKEFP-----------SRE----- 65 (200)
T ss_pred EEEEEeCCcccHHHHHHHHhcCCCCcEEEEEEeCC-CCCHHHHHHHHcCCCEEEeccccCC-----------CHH-----
Confidence 34567888999332222222212345555555544 3444567888899988655322221 110
Q ss_pred ccccccCccccCChhhhhhhhcceEEEEeccccccChHHHHH
Q 022475 91 SAANCYKSEHLKRPEIWSIVEKAKYYYIAGFFLTVSPESIQM 132 (296)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~ 132 (296)
.+..+-... -.-.+.|++++.||..-++++.+..
T Consensus 66 ----~~d~~l~~~----l~~~~~dlvvLAGyMrIL~~~fl~~ 99 (200)
T COG0299 66 ----AFDRALVEA----LDEYGPDLVVLAGYMRILGPEFLSR 99 (200)
T ss_pred ----HHHHHHHHH----HHhcCCCEEEEcchHHHcCHHHHHH
Confidence 111110000 0125689999999876667765443
No 248
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=21.63 E-value=4.8e+02 Score=21.73 Aligned_cols=35 Identities=6% Similarity=0.010 Sum_probs=22.6
Q ss_pred hhhhcceEEEEeccccccChHHHHHHHHHHhhCCCEEEE
Q 022475 108 SIVEKAKYYYIAGFFLTVSPESIQMVAEHAAAKNKVFMM 146 (296)
Q Consensus 108 ~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (296)
+.+.+.|+++... -+.+....+-+.+.+.++|++.
T Consensus 118 ~~~~~~DiVi~~~----D~~~~r~~ln~~~~~~~ip~v~ 152 (245)
T PRK05690 118 ALIAGHDLVLDCT----DNVATRNQLNRACFAAKKPLVS 152 (245)
T ss_pred HHHhcCCEEEecC----CCHHHHHHHHHHHHHhCCEEEE
Confidence 4567888877652 2345545566777888888654
No 249
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=21.36 E-value=1.5e+02 Score=24.80 Aligned_cols=55 Identities=20% Similarity=0.204 Sum_probs=41.8
Q ss_pred HhhhcCCCceeecCChhHHHHHHHHHhhcCCCcEEEEEeecCCchhHHHHHHHHhcC
Q 022475 3 DELASKENVEYIAGGATQNSIKVAQWMLQIPGATSYIGCIGKDKFGEEMKKNSTAAG 59 (296)
Q Consensus 3 ~~~~~~~~~~~~~GG~~~n~a~~~~~l~~lg~~v~~~~~vG~D~~g~~i~~~l~~~g 59 (296)
.++.+..+.....|| |.+..-.+.+++.+|.+-..+|...-. .-+++.+.+++.|
T Consensus 68 ~~i~~~~~~~vQvGG-GIRs~~~v~~ll~~G~~rViiGt~av~-~p~~v~~~~~~~g 122 (241)
T COG0106 68 KEILEATDVPVQVGG-GIRSLEDVEALLDAGVARVIIGTAAVK-NPDLVKELCEEYG 122 (241)
T ss_pred HHHHHhCCCCEEeeC-CcCCHHHHHHHHHCCCCEEEEecceec-CHHHHHHHHHHcC
Confidence 455666677788899 666666666678888888888887743 4788888998887
No 250
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=21.20 E-value=5.1e+02 Score=21.89 Aligned_cols=42 Identities=14% Similarity=0.215 Sum_probs=24.4
Q ss_pred hcceEEEEeccccccC-hHHHHHHHHHHhhC-CCEEEEeCCchh
Q 022475 111 EKAKYYYIAGFFLTVS-PESIQMVAEHAAAK-NKVFMMNLSAPF 152 (296)
Q Consensus 111 ~~~~~~~i~g~~~~~~-~~~~~~~~~~~~~~-~~~~~~d~~~~~ 152 (296)
..+|++=+++...... .+.+..+++...+. +.++++|...+.
T Consensus 37 ~GAdiIDVg~~~~~~eE~~r~~~~v~~l~~~~~~plsIDT~~~~ 80 (261)
T PRK07535 37 AGADYLDVNAGTAVEEEPETMEWLVETVQEVVDVPLCIDSPNPA 80 (261)
T ss_pred CCCCEEEECCCCCchhHHHHHHHHHHHHHHhCCCCEEEeCCCHH
Confidence 4578888876432111 23455566655543 677888876544
No 251
>PLN02689 Bifunctional isoaspartyl peptidase/L-asparaginase
Probab=21.15 E-value=1e+02 Score=26.93 Aligned_cols=35 Identities=20% Similarity=0.401 Sum_probs=26.7
Q ss_pred cccCCCCCchhhhHHHHHH----Hhc--CCCHHHHHHHhhH
Q 022475 242 KLVDTNGAGDAFVGGFLSQ----LVQ--EKPVEDCVRTGCY 276 (296)
Q Consensus 242 ~vvd~tGaGDaf~ag~~~~----l~~--~~~~~~a~~~A~~ 276 (296)
--+.+||.||.|+=..++. +++ |+++++|++.+..
T Consensus 233 ~Avs~TG~GE~iir~~~A~~v~~~m~~~g~s~~~A~~~~i~ 273 (318)
T PLN02689 233 CAVSATGKGEAIIRGTVARDVAAVMEYKGLPLQEAVDYVIK 273 (318)
T ss_pred cEEeeecchHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 4678999999997555443 344 7899999998874
No 252
>cd02772 MopB_NDH-1_NuoG2 MopB_NDH-1_NuoG2: The second domain of the NuoG subunit of the NADH-quinone oxidoreductase/NADH dehydrogenase-1 (NDH-1), found in beta- and gammaproteobacteria. The NDH-1 is the first energy-transducting complex in the respiratory chain and functions as a redox pump that uses the redox energy to translocate H+ ions across the membrane, resulting in a significant contribution to energy production. In Escherichia coli NDH-1, the largest subunit is encoded by the nuoG gene, and is part of the 14 distinct subunits constituting the functional enzyme. The NuoG subunit is made of two domains: the first contains three binding sites for FeS clusters (the fer2 domain), the second domain (this CD), is of unknown function or, as postulated, has lost an ancestral formate dehydrogenase activity that became redundant during the evolution of the complex I enzyme. Although only vestigial sequence evidence remains of a molybdopterin binding site, this protein domain belongs to t
Probab=21.15 E-value=5.8e+02 Score=22.93 Aligned_cols=44 Identities=11% Similarity=-0.001 Sum_probs=26.7
Q ss_pred hhhcceEEEEeccccccChHHHHHHHHHHhhCCCE-EEEeCCchh
Q 022475 109 IVEKAKYYYIAGFFLTVSPESIQMVAEHAAAKNKV-FMMNLSAPF 152 (296)
Q Consensus 109 ~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~-~~~d~~~~~ 152 (296)
.+.++|++++=|.++....-.....++.++++|.+ +++|++...
T Consensus 149 di~~ad~il~~G~n~~~~~p~~~~~l~~a~~~g~k~i~idp~~~~ 193 (414)
T cd02772 149 EISELDRVLVIGSNLRKEHPLLAQRLRQAVKKGAKLSAINPADDD 193 (414)
T ss_pred HHHhCCEEEEECCCccccchHHHHHHHHHHHcCCEEEEEeCccch
Confidence 46789998887765432222233444556677765 677986543
No 253
>PRK08861 cystathionine gamma-synthase; Provisional
Probab=21.12 E-value=6.1e+02 Score=22.81 Aligned_cols=38 Identities=16% Similarity=0.091 Sum_probs=22.9
Q ss_pred cceEEEEeccc-cccChHHHHHHHHHHhhCCCEEEEeCC
Q 022475 112 KAKYYYIAGFF-LTVSPESIQMVAEHAAAKNKVFMMNLS 149 (296)
Q Consensus 112 ~~~~~~i~g~~-~~~~~~~~~~~~~~~~~~~~~~~~d~~ 149 (296)
+.++++++..+ +....-.+..+.+.+++.++.+++|-.
T Consensus 138 ~tklV~lesP~NPtG~v~dl~~I~~la~~~gi~vIvDea 176 (388)
T PRK08861 138 KPKLILLETPSNPLVRVVDIAELCQKAKAVGALVAVDNT 176 (388)
T ss_pred CCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECC
Confidence 56788886422 111111245677777888888888853
No 254
>smart00642 Aamy Alpha-amylase domain.
Probab=21.08 E-value=1.3e+02 Score=23.48 Aligned_cols=27 Identities=11% Similarity=0.217 Sum_probs=22.2
Q ss_pred ChHHHHHHHHHHhhCCCEEEEeCCchh
Q 022475 126 SPESIQMVAEHAAAKNKVFMMNLSAPF 152 (296)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~d~~~~~ 152 (296)
+.+.+..+++.|+++|+.+++|.....
T Consensus 68 t~~d~~~lv~~~h~~Gi~vilD~V~NH 94 (166)
T smart00642 68 TMEDFKELVDAAHARGIKVILDVVINH 94 (166)
T ss_pred CHHHHHHHHHHHHHCCCEEEEEECCCC
Confidence 357789999999999999999985433
No 255
>cd07018 S49_SppA_67K_type Signal peptide peptidase A (SppA) 67K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 67K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily contain an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown that members in this subfamily, mostly bacterial, are serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys
Probab=21.07 E-value=1e+02 Score=25.23 Aligned_cols=50 Identities=12% Similarity=0.021 Sum_probs=30.0
Q ss_pred cCChhHHHHHHHHHhhcCCCcEEEEEeecCCchhHHHHHHHHhcCCceeEEe
Q 022475 15 AGGATQNSIKVAQWMLQIPGATSYIGCIGKDKFGEEMKKNSTAAGVNVKYYE 66 (296)
Q Consensus 15 ~GG~~~n~a~~~~~l~~lg~~v~~~~~vG~D~~g~~i~~~l~~~gi~~~~~~ 66 (296)
.++.++.+|.++..+.. .+...+|.+|==.....+.+.|++.||+.+.++
T Consensus 88 ~~sggy~lasaad~I~a--~p~~~vg~iGv~~~~~~~~~ll~klGv~~~~~~ 137 (222)
T cd07018 88 YSQGQYYLASAADEIYL--NPSGSVELTGLSAETLFFKGLLDKLGVEVQVFR 137 (222)
T ss_pred CCchhhhhhhhCCEEEE--CCCceEEeeccchhhhhHHHHHHHcCCcEEEEE
Confidence 34445666655554433 455556666543334556788888999887664
No 256
>cd00885 cinA Competence-damaged protein. CinA is the first gene in the competence- inducible (cin) operon and is thought to be specifically required at some stage in the process of transformation. This domain is closely related to a domain, found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, where the domain is presumed to bind molybdopterin.
Probab=20.89 E-value=3.1e+02 Score=21.40 Aligned_cols=32 Identities=9% Similarity=0.145 Sum_probs=20.6
Q ss_pred HHHHHhhcCCCcEEEEEeecCCchhHHHHHHHHh
Q 022475 24 KVAQWMLQIPGATSYIGCIGKDKFGEEMKKNSTA 57 (296)
Q Consensus 24 ~~~~~l~~lg~~v~~~~~vG~D~~g~~i~~~l~~ 57 (296)
...++|...|.++..+..+++| -+.|.+.+++
T Consensus 23 ~l~~~L~~~G~~v~~~~~v~Dd--~~~I~~~l~~ 54 (170)
T cd00885 23 FLAKELAELGIEVYRVTVVGDD--EDRIAEALRR 54 (170)
T ss_pred HHHHHHHHCCCEEEEEEEeCCC--HHHHHHHHHH
Confidence 3334445567888888888887 3445566554
No 257
>KOG1481 consensus Cysteine synthase [Amino acid transport and metabolism]
Probab=20.83 E-value=4.5e+02 Score=22.76 Aligned_cols=59 Identities=5% Similarity=0.036 Sum_probs=32.2
Q ss_pred hhhcceEEEEeccccccChHHHHHHHHHHhhCC-----CEEEEeCCchhhhhhhhHHHHhhcCCCcEE
Q 022475 109 IVEKAKYYYIAGFFLTVSPESIQMVAEHAAAKN-----KVFMMNLSAPFICEFFREPQEKALPYMDYV 171 (296)
Q Consensus 109 ~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~-----~~~~~d~~~~~~~~~~~~~~~~~l~~~dv~ 171 (296)
.+..-|-+++.+.. --......+.++..| +.+..|......+..+.+.....-...+++
T Consensus 318 ~Ll~~dGLFvGsSs----a~N~VaAv~vAk~LgpG~~iVtilCDsG~rh~sk~~~~~~l~~~~l~p~~ 381 (391)
T KOG1481|consen 318 YLLDNDGLFVGSSS----ALNCVAAVRVAKTLGPGHTIVTILCDSGSRHLSKLFSESFLESKKLSPVI 381 (391)
T ss_pred HhhhcCceEecchh----hHHHHHHHHHHHhcCCCceEEEEEeCCcchHHHHhcCHHHHhhcCCCccc
Confidence 46677888886422 112233455566554 236778777666655555554444444443
No 258
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=20.60 E-value=4.1e+02 Score=20.61 Aligned_cols=122 Identities=11% Similarity=0.083 Sum_probs=51.1
Q ss_pred HHHHHHHHhcCCceeEEe-----cCCCCceeEEEEEeCCeeceeeccccc--c-----ccCcc---ccCChhhhhhhhcc
Q 022475 49 EEMKKNSTAAGVNVKYYE-----DESAPTGTCAVCVVGGERSLVANLSAA--N-----CYKSE---HLKRPEIWSIVEKA 113 (296)
Q Consensus 49 ~~i~~~l~~~gi~~~~~~-----~~~~~t~~~~~~~~~~~~~~~~~~~~~--~-----~~~~~---~~~~~~~~~~~~~~ 113 (296)
..+.+.|++.|+....+. ..+...+..++.+.+|++..+...... . .+..+ .+..+.....+.++
T Consensus 17 ~k~i~~l~~~~~~v~Gf~t~evr~~g~r~GF~iv~l~~g~~~~la~~~~~~~~~vgky~v~~e~fe~~~~~~L~~~~~~~ 96 (168)
T PF03266_consen 17 KKVIEELKKKGLPVGGFYTEEVRENGRRIGFDIVDLNSGEEAILARVDFRSGPRVGKYFVDLESFEEIGLPALRNALSSS 96 (168)
T ss_dssp HHHHHHHHHTCGGEEEEEEEEEETTSSEEEEEEEET-TS-EEEEEETTSS-SCECTTCEE-HHHHHCCCCCCCHHHHHCC
T ss_pred HHHHHHhhccCCccceEEeecccCCCceEEEEEEECcCCCccccccccccccccCCCEEEcHHHHHHHHHHHHHhhcCCC
Confidence 445566766687776652 133334444444446666554333200 0 11111 11111122334688
Q ss_pred eEEEEeccc-cccChHHHHHHHHHHhhCCCEEEEeCCchhhhhhhhHHHHhhcCC--CcEEEcC
Q 022475 114 KYYYIAGFF-LTVSPESIQMVAEHAAAKNKVFMMNLSAPFICEFFREPQEKALPY--MDYVFGN 174 (296)
Q Consensus 114 ~~~~i~g~~-~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~--~dv~~~n 174 (296)
|+++++=+. ++....-..+.+..+-+.+.+++.-++... ..+.++.+.++ ..++.++
T Consensus 97 ~liviDEIG~mEl~~~~F~~~v~~~l~s~~~vi~vv~~~~----~~~~l~~i~~~~~~~i~~vt 156 (168)
T PF03266_consen 97 DLIVIDEIGKMELKSPGFREAVEKLLDSNKPVIGVVHKRS----DNPFLEEIKRRPDVKIFEVT 156 (168)
T ss_dssp HEEEE---STTCCC-CHHHHHHHHHHCTTSEEEEE--SS------SCCHHHHHTTTTSEEEE--
T ss_pred CEEEEeccchhhhcCHHHHHHHHHHHcCCCcEEEEEecCC----CcHHHHHHHhCCCcEEEEeC
Confidence 999998544 222223333334444446677666664431 11224455554 4445443
No 259
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=20.53 E-value=1.2e+02 Score=23.78 Aligned_cols=67 Identities=12% Similarity=0.094 Sum_probs=37.1
Q ss_pred cceEEEEeccccccChHHH----HHHHHHHhhCCCEEEEeCCchhhhhhhhHHHHhhcCCCcEEEcCHHHHH
Q 022475 112 KAKYYYIAGFFLTVSPESI----QMVAEHAAAKNKVFMMNLSAPFICEFFREPQEKALPYMDYVFGNETEAR 179 (296)
Q Consensus 112 ~~~~~~i~g~~~~~~~~~~----~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~dv~~~n~~E~~ 179 (296)
+.|.+++....+. .|..+ ..+.+.++-..+..++|.............+.+-+.++|++.+|+-+..
T Consensus 84 ~~d~IiIE~sG~a-~p~~l~~~~~~~~~~~~~~~iI~vVDa~~~~~~~~~~~~~~~Qi~~ADvIvlnK~D~~ 154 (178)
T PF02492_consen 84 RPDRIIIETSGLA-DPAPLILQDPPLKEDFRLDSIITVVDATNFDELENIPELLREQIAFADVIVLNKIDLV 154 (178)
T ss_dssp C-SEEEEEEECSS-GGGGHHHHSHHHHHHESESEEEEEEEGTTHGGHTTHCHHHHHHHCT-SEEEEE-GGGH
T ss_pred CcCEEEECCcccc-ccchhhhccccccccccccceeEEeccccccccccchhhhhhcchhcCEEEEeccccC
Confidence 5799998864432 23332 1122222223355778885432233456667788899999999987653
No 260
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=20.34 E-value=1.6e+02 Score=19.92 Aligned_cols=22 Identities=32% Similarity=0.672 Sum_probs=18.2
Q ss_pred EEeecCCchhHHHHHHHHhcCC
Q 022475 39 IGCIGKDKFGEEMKKNSTAAGV 60 (296)
Q Consensus 39 ~~~vG~D~~g~~i~~~l~~~gi 60 (296)
++.+|....|..+.+.|.+.|+
T Consensus 2 I~iIG~G~mg~al~~~l~~~g~ 23 (96)
T PF03807_consen 2 IGIIGAGNMGSALARGLLASGI 23 (96)
T ss_dssp EEEESTSHHHHHHHHHHHHTTS
T ss_pred EEEECCCHHHHHHHHHHHHCCC
Confidence 5677877799999999988886
No 261
>PF12641 Flavodoxin_3: Flavodoxin domain
Probab=20.32 E-value=2e+02 Score=22.32 Aligned_cols=39 Identities=5% Similarity=0.096 Sum_probs=22.2
Q ss_pred hhcceEEEEecccc-ccChHHHHHHHHHHhhCCCEEEEeC
Q 022475 110 VEKAKYYYIAGFFL-TVSPESIQMVAEHAAAKNKVFMMNL 148 (296)
Q Consensus 110 ~~~~~~~~i~g~~~-~~~~~~~~~~~~~~~~~~~~~~~d~ 148 (296)
+.++|+++++.+.. +..+..+.++++.++...+.++-..
T Consensus 37 ~~~yD~i~lG~w~d~G~~d~~~~~fl~~l~~KkV~lF~T~ 76 (160)
T PF12641_consen 37 LEDYDLIFLGFWIDKGTPDKDMKEFLKKLKGKKVALFGTA 76 (160)
T ss_pred CCCCCEEEEEcCccCCCCCHHHHHHHHHccCCeEEEEEec
Confidence 56678888776653 3344566666666654443333333
No 262
>PRK05994 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=20.27 E-value=6.7e+02 Score=22.88 Aligned_cols=38 Identities=16% Similarity=0.171 Sum_probs=25.0
Q ss_pred cceEEEEeccc-cccChHHHHHHHHHHhhCCCEEEEeCC
Q 022475 112 KAKYYYIAGFF-LTVSPESIQMVAEHAAAKNKVFMMNLS 149 (296)
Q Consensus 112 ~~~~~~i~g~~-~~~~~~~~~~~~~~~~~~~~~~~~d~~ 149 (296)
+.+++++.... +....-.+.++.+.++++++.+++|-.
T Consensus 148 ~tklV~vesp~NptG~v~dl~~I~~la~~~gi~livD~a 186 (427)
T PRK05994 148 RTKAIFIESIANPGGTVTDIAAIAEVAHRAGLPLIVDNT 186 (427)
T ss_pred CCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECC
Confidence 57788886432 111112356788888999999988864
No 263
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=20.22 E-value=3.5e+02 Score=23.32 Aligned_cols=41 Identities=15% Similarity=0.324 Sum_probs=24.7
Q ss_pred hhhhcceEEEEeccccccChHHHHHHHHHHhhC-----CCEEEEeCCchh
Q 022475 108 SIVEKAKYYYIAGFFLTVSPESIQMVAEHAAAK-----NKVFMMNLSAPF 152 (296)
Q Consensus 108 ~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~-----~~~~~~d~~~~~ 152 (296)
..+++..+.+++ ++++..+..+++.+.+. ++-+.+|.+...
T Consensus 19 ~~lED~Gy~cvD----NlP~~Ll~~l~~~~~~~~~~~~~~Ai~iD~R~~~ 64 (284)
T PF03668_consen 19 RALEDLGYYCVD----NLPPSLLPQLIELLAQSNSKIEKVAIVIDIRSRE 64 (284)
T ss_pred HHHHhcCeeEEc----CCcHHHHHHHHHHHHhcCCCCceEEEEEeCCChH
Confidence 446666777776 55666666666665532 233667776654
No 264
>PRK01215 competence damage-inducible protein A; Provisional
Probab=20.15 E-value=2.7e+02 Score=23.66 Aligned_cols=45 Identities=16% Similarity=0.006 Sum_probs=27.5
Q ss_pred HHHHHHHHHhhcCCCcEEEEEeecCCchhHHHHHHHHhcCCceeEEe
Q 022475 20 QNSIKVAQWMLQIPGATSYIGCIGKDKFGEEMKKNSTAAGVNVKYYE 66 (296)
Q Consensus 20 ~n~a~~~~~l~~lg~~v~~~~~vG~D~~g~~i~~~l~~~gi~~~~~~ 66 (296)
.|.....++|..+|.++...+.+++| -+.|.+.+++.--..+.+.
T Consensus 23 tn~~~l~~~L~~~G~~v~~~~~v~Dd--~~~I~~~l~~a~~~~DlVI 67 (264)
T PRK01215 23 TNASWIARRLTYLGYTVRRITVVMDD--IEEIVSAFREAIDRADVVV 67 (264)
T ss_pred hhHHHHHHHHHHCCCeEEEEEEeCCC--HHHHHHHHHHHhcCCCEEE
Confidence 34444455556678999999999998 3446666655322334443
Done!