BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022477
(296 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1OKC|A Chain A, Structure Of Mitochondrial AdpATP CARRIER IN COMPLEX WITH
Carboxyatractyloside
pdb|2C3E|A Chain A, The Bovine Mitochondrial Adp-Atp Carrier
Length = 297
Score = 108 bits (269), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 69/213 (32%), Positives = 107/213 (50%), Gaps = 16/213 (7%)
Query: 61 VQQLLAGGIAGAFSKTCTAPLARLTILFQVQGMHSDLAALSK-PSILREASRIANEEGFR 119
++ LAGG+A A SKT AP+ R+ +L QVQ ++A + I+ RI E+GF
Sbjct: 8 LKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFL 67
Query: 120 AFWKGNLVTIAHRLPYSSVNFYCYEHYKNFLQSVLGLDNHRESASVNLGVHFVGGGLAGM 179
+FW+GNL + P ++NF + YK G+D H++ G + GG AG
Sbjct: 68 SFWRGNLANVIRYFPTQALNFAFKDKYKQIFLG--GVDRHKQFWRYFAG-NLASGGAAGA 124
Query: 180 TAASATYPLDLVRTRL-------AAQRQAIYYKGIWHSFQTICREEGFLGLYKGLGATLL 232
T+ YPLD RTRL AAQR+ + G+ + I + +G GLY+G ++
Sbjct: 125 TSLCFVYPLDFARTRLAADVGKGAAQRE---FTGLGNCITKIFKSDGLRGLYQGFNVSVQ 181
Query: 233 GVGPSIAISFSVYESLRSFWQSYRPNDPTVMVS 265
G+ A F VY++ + P + ++VS
Sbjct: 182 GIIIYRAAYFGVYDTAKGMLPD--PKNVHIIVS 212
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 58/127 (45%), Gaps = 30/127 (23%)
Query: 170 HFVGGGLAGMTAASATYPLDLVR---------TRLAAQRQAIYYKGIWHSFQTICREEGF 220
F+ GG+A + +A P++ V+ +++A++Q YKGI I +E+GF
Sbjct: 10 DFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQ---YKGIIDCVVRIPKEQGF 66
Query: 221 LGLYKGLGATLLGVGPSIAISFSVYESL-----------RSFWQSYRPNDPTVMVSLACG 269
L ++G A ++ P+ A++F+ + + FW+ + N LA G
Sbjct: 67 LSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDRHKQFWRYFAGN-------LASG 119
Query: 270 SLSGIAS 276
+G S
Sbjct: 120 GAAGATS 126
>pdb|2LCK|A Chain A, Structure Of The Mitochondrial Uncoupling Protein 2
Determined By Nmr Molecular Fragment Replacement
Length = 303
Score = 60.8 bits (146), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 54/203 (26%), Positives = 79/203 (38%), Gaps = 13/203 (6%)
Query: 59 GTVQQLLAGGIAGAFSKTCTAPLARLTILFQVQGMHSDLAALSKPSILREASRIANEEGF 118
G +LLAG GA + P + + FQ Q S + IA EEG
Sbjct: 103 GIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARAG--GGRRYQSTVEAYKTIAREEGI 160
Query: 119 RAFWKGNLVTIAHRLPYSSVNFYCYEHYKN-FLQSVLGLDNHRESASVNLGVHFVGGGLA 177
R WKG +A + Y+ K+ L++ L D+ L HF A
Sbjct: 161 RGLWKGTSPNVARNAIVNCAELVTYDLIKDTLLKANLMTDD--------LPCHFTSAFGA 212
Query: 178 GMTAASATYPLDLVRTRLAAQRQAIYYKGIWHSFQTICREEGFLGLYKGLGATLLGVGPS 237
G P+D+V+TR Y+ H T+ R+EG YKG + L +G
Sbjct: 213 GFCTTVIASPVDVVKTRYMNSALGQYHSA-GHCALTMLRKEGPRAFYKGFMPSFLRLGSW 271
Query: 238 IAISFSVYESL-RSFWQSYRPND 259
+ F YE L R+ +Y+ +
Sbjct: 272 NVVMFVTYEQLKRALMAAYQSRE 294
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 45/95 (47%), Gaps = 9/95 (9%)
Query: 167 LGVHFVGGGLAGMTAASATYPLDLVRTRLAAQRQA---------IYYKGIWHSFQTICRE 217
+ V F+G G A A T+PLD + RL Q ++ Y+G+ + T+ R
Sbjct: 1 MTVKFLGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRT 60
Query: 218 EGFLGLYKGLGATLLGVGPSIAISFSVYESLRSFW 252
EG LY GL A L ++ +Y+S++ F+
Sbjct: 61 EGPRSLYNGLVAGLQRQMSFASVRIGLYDSVKQFY 95
>pdb|3HW3|A Chain A, The Crystal Structure Of Avian Influenza Virus Pa_n In
Complex With Ump
pdb|3HW3|B Chain B, The Crystal Structure Of Avian Influenza Virus Pa_n In
Complex With Ump
pdb|3HW3|C Chain C, The Crystal Structure Of Avian Influenza Virus Pa_n In
Complex With Ump
pdb|3HW3|D Chain D, The Crystal Structure Of Avian Influenza Virus Pa_n In
Complex With Ump
pdb|3HW5|A Chain A, Crystal Structure Of Avian Influenza Virus Pa_n In Complex
With Amp
pdb|3HW5|B Chain B, Crystal Structure Of Avian Influenza Virus Pa_n In Complex
With Amp
pdb|3HW5|C Chain C, Crystal Structure Of Avian Influenza Virus Pa_n In Complex
With Amp
pdb|3HW5|D Chain D, Crystal Structure Of Avian Influenza Virus Pa_n In Complex
With Amp
pdb|3HW6|A Chain A, Crystal Structure Of Avian Influenza Virus Pa_n In Complex
With Mn
pdb|3HW6|B Chain B, Crystal Structure Of Avian Influenza Virus Pa_n In Complex
With Mn
pdb|3HW6|C Chain C, Crystal Structure Of Avian Influenza Virus Pa_n In Complex
With Mn
pdb|3HW6|D Chain D, Crystal Structure Of Avian Influenza Virus Pa_n In Complex
With Mn
pdb|3HW4|A Chain A, Crystal Structure Of Avian Influenza A Virus In Complex
With Tmp
pdb|3HW4|B Chain B, Crystal Structure Of Avian Influenza A Virus In Complex
With Tmp
pdb|3HW4|C Chain C, Crystal Structure Of Avian Influenza A Virus In Complex
With Tmp
pdb|3HW4|D Chain D, Crystal Structure Of Avian Influenza A Virus In Complex
With Tmp
Length = 261
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 38/84 (45%), Gaps = 6/84 (7%)
Query: 181 AASATYPLD-----LVRTRLAAQRQAIYYKGIWHSFQTICR-EEGFLGLYKGLGATLLGV 234
A A Y LD ++TRL RQ + +G+W SF+ R EE ++ G
Sbjct: 161 ATKADYTLDEESRARIKTRLFTIRQEMASRGLWDSFRQSERGEETIEERFEITGTMCRLA 220
Query: 235 GPSIAISFSVYESLRSFWQSYRPN 258
S+ +FS E R++ + PN
Sbjct: 221 DQSLPPNFSSLEKFRAYVDGFEPN 244
>pdb|3EBJ|A Chain A, Crystal Structure Of An Avian Influenza Virus Protein
pdb|3EBJ|B Chain B, Crystal Structure Of An Avian Influenza Virus Protein
pdb|3EBJ|C Chain C, Crystal Structure Of An Avian Influenza Virus Protein
pdb|3EBJ|D Chain D, Crystal Structure Of An Avian Influenza Virus Protein
Length = 259
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 38/84 (45%), Gaps = 6/84 (7%)
Query: 181 AASATYPLD-----LVRTRLAAQRQAIYYKGIWHSFQTICR-EEGFLGLYKGLGATLLGV 234
A A Y LD ++TRL RQ + +G+W SF+ R EE ++ G
Sbjct: 159 ATKADYTLDEESRARIKTRLFTIRQEMASRGLWDSFRQSERGEETIEERFEITGTMCRLA 218
Query: 235 GPSIAISFSVYESLRSFWQSYRPN 258
S+ +FS E R++ + PN
Sbjct: 219 DQSLPPNFSSLEKFRAYVDGFEPN 242
>pdb|2I3O|A Chain A, Crystal Structure Of Gamma-Glutamyl Transferase Related
Protein From Thermoplasma Acidophilum
pdb|2I3O|B Chain B, Crystal Structure Of Gamma-Glutamyl Transferase Related
Protein From Thermoplasma Acidophilum
pdb|2I3O|C Chain C, Crystal Structure Of Gamma-Glutamyl Transferase Related
Protein From Thermoplasma Acidophilum
pdb|2I3O|D Chain D, Crystal Structure Of Gamma-Glutamyl Transferase Related
Protein From Thermoplasma Acidophilum
Length = 516
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Query: 100 LSKPSILREASRIANEEGFRAFWKGNLVTI 129
L +P L E+ R+ +EEGFR+F+ G+L I
Sbjct: 183 LKQPD-LAESFRLXSEEGFRSFYDGSLADI 211
>pdb|4EB8|A Chain A, Crystal Structure Of Purine Nucleoside Phosphorylase
(w16y, W94y, W178y, H257w) Mutant From Human Complexed
With Dadme-immg And Phosphate
pdb|4EB8|B Chain B, Crystal Structure Of Purine Nucleoside Phosphorylase
(w16y, W94y, W178y, H257w) Mutant From Human Complexed
With Dadme-immg And Phosphate
pdb|4EB8|C Chain C, Crystal Structure Of Purine Nucleoside Phosphorylase
(w16y, W94y, W178y, H257w) Mutant From Human Complexed
With Dadme-immg And Phosphate
pdb|4ECE|A Chain A, Crystal Structure Of Purine Nucleoside Phosphorylase
(w16y, W94y, W178y, H257w) Mutant From Human Complexed
With Guanine
pdb|4ECE|B Chain B, Crystal Structure Of Purine Nucleoside Phosphorylase
(w16y, W94y, W178y, H257w) Mutant From Human Complexed
With Guanine
pdb|4ECE|C Chain C, Crystal Structure Of Purine Nucleoside Phosphorylase
(w16y, W94y, W178y, H257w) Mutant From Human Complexed
With Guanine
pdb|4ECE|D Chain D, Crystal Structure Of Purine Nucleoside Phosphorylase
(w16y, W94y, W178y, H257w) Mutant From Human Complexed
With Guanine
pdb|4ECE|E Chain E, Crystal Structure Of Purine Nucleoside Phosphorylase
(w16y, W94y, W178y, H257w) Mutant From Human Complexed
With Guanine
pdb|4ECE|F Chain F, Crystal Structure Of Purine Nucleoside Phosphorylase
(w16y, W94y, W178y, H257w) Mutant From Human Complexed
With Guanine
pdb|4GKA|A Chain A, Crystal Structure Of Purine Nucleoside Phosphorylase
(w16y, W94y, W178y, H257w) Mutant From Human Complexed
With Phosphate
pdb|4GKA|B Chain B, Crystal Structure Of Purine Nucleoside Phosphorylase
(w16y, W94y, W178y, H257w) Mutant From Human Complexed
With Phosphate
pdb|4GKA|C Chain C, Crystal Structure Of Purine Nucleoside Phosphorylase
(w16y, W94y, W178y, H257w) Mutant From Human Complexed
With Phosphate
pdb|4GKA|D Chain D, Crystal Structure Of Purine Nucleoside Phosphorylase
(w16y, W94y, W178y, H257w) Mutant From Human Complexed
With Phosphate
pdb|4GKA|E Chain E, Crystal Structure Of Purine Nucleoside Phosphorylase
(w16y, W94y, W178y, H257w) Mutant From Human Complexed
With Phosphate
pdb|4GKA|F Chain F, Crystal Structure Of Purine Nucleoside Phosphorylase
(w16y, W94y, W178y, H257w) Mutant From Human Complexed
With Phosphate
Length = 324
Score = 28.5 bits (62), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 5/42 (11%)
Query: 139 NFYCYEHYKNFLQSVLGLDNHRESASVNLGVHFVGGGLAGMT 180
N Y YE YKN + +L HR ++ G GL G+T
Sbjct: 38 NGYTYEDYKNTAEYLLSHTKHRPQVAI-----ICGSGLGGLT 74
>pdb|4EAR|A Chain A, Crystal Structure Of Purine Nucleoside Phosphorylase
(w16y, W94y, W178y, H257w) Mutant From Human Complexed
With Dadme-immg And Phosphate
pdb|4EAR|B Chain B, Crystal Structure Of Purine Nucleoside Phosphorylase
(w16y, W94y, W178y, H257w) Mutant From Human Complexed
With Dadme-immg And Phosphate
pdb|4EAR|C Chain C, Crystal Structure Of Purine Nucleoside Phosphorylase
(w16y, W94y, W178y, H257w) Mutant From Human Complexed
With Dadme-immg And Phosphate
Length = 324
Score = 28.5 bits (62), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 5/42 (11%)
Query: 139 NFYCYEHYKNFLQSVLGLDNHRESASVNLGVHFVGGGLAGMT 180
N Y YE YKN + +L HR ++ G GL G+T
Sbjct: 38 NGYTYEDYKNTAEYLLSHTKHRPQVAI-----ICGSGLGGLT 74
>pdb|3PHB|E Chain E, Crystal Structure Of Human Purine Nucleoside Phosphorylase
In Complex With Dadme-Immg
pdb|3PHB|Q Chain Q, Crystal Structure Of Human Purine Nucleoside Phosphorylase
In Complex With Dadme-Immg
pdb|3PHB|S Chain S, Crystal Structure Of Human Purine Nucleoside Phosphorylase
In Complex With Dadme-Immg
pdb|3PHB|T Chain T, Crystal Structure Of Human Purine Nucleoside Phosphorylase
In Complex With Dadme-Immg
pdb|3PHB|U Chain U, Crystal Structure Of Human Purine Nucleoside Phosphorylase
In Complex With Dadme-Immg
pdb|3PHB|Y Chain Y, Crystal Structure Of Human Purine Nucleoside Phosphorylase
In Complex With Dadme-Immg
Length = 324
Score = 28.5 bits (62), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 5/42 (11%)
Query: 139 NFYCYEHYKNFLQSVLGLDNHRESASVNLGVHFVGGGLAGMT 180
N Y YE YKN + +L HR ++ G GL G+T
Sbjct: 38 NGYTYEDYKNTAEWLLSHTKHRPQVAI-----ICGSGLGGLT 74
>pdb|1PF7|E Chain E, Crystal Structure Of Human Pnp Complexed With Immucillin H
pdb|1RR6|A Chain A, Structure Of Human Purine Nucleoside Phosphorylase In
Complex With Immucillin-H And Phosphate
pdb|1RSZ|A Chain A, Structure Of Human Purine Nucleoside Phosphorylase In
Complex With Dadme-Immucillin-H And Sulfate
pdb|1RT9|A Chain A, Structure Of Human Purine Nucleoside Phosphorylase In
Complex With Immucillin-H And Sulfate
pdb|1YRY|E Chain E, Crystal Structure Of Human Pnp Complexed With Mesg
pdb|1ULA|A Chain A, Application Of Crystallographic And Modeling Methods In
The Design Of Purine Nucleoside Phosphorylase Inhibitors
pdb|1ULB|A Chain A, Application Of Crystallographic And Modeling Methods In
The Design Of Purine Nucleoside Phosphorylase Inhibitors
pdb|3BGS|A Chain A, Structure Of Human Purine Nucleoside Phosphorylase With L-
Dadme-Immh And Phosphate
pdb|2Q7O|E Chain E, Structure Of Human Purine Nucleoside Phosphorylase In
Complex With L- Immucillin-H
pdb|3D1V|A Chain A, Crystal Structure Of Human Pnp Complexed With
2-Mercapto(3h) Quinazolinone
pdb|3K8O|E Chain E, Crystal Structure Of Human Purine Nucleoside Phosphorylase
In Complex With Datme-Immh
pdb|3K8O|Q Chain Q, Crystal Structure Of Human Purine Nucleoside Phosphorylase
In Complex With Datme-Immh
pdb|3K8O|S Chain S, Crystal Structure Of Human Purine Nucleoside Phosphorylase
In Complex With Datme-Immh
pdb|3K8O|T Chain T, Crystal Structure Of Human Purine Nucleoside Phosphorylase
In Complex With Datme-Immh
pdb|3K8O|U Chain U, Crystal Structure Of Human Purine Nucleoside Phosphorylase
In Complex With Datme-Immh
pdb|3K8O|Y Chain Y, Crystal Structure Of Human Purine Nucleoside Phosphorylase
In Complex With Datme-Immh
pdb|3K8Q|A Chain A, Crystal Structure Of Human Purine Nucleoside Phosphorylase
In Complex With Serme-Immucillin H
pdb|3INY|A Chain A, Crystal Structure Of Human Purine Nucleoside Phosphorylase
In Complex With 7-Deazaguanine
Length = 289
Score = 28.5 bits (62), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 5/42 (11%)
Query: 139 NFYCYEHYKNFLQSVLGLDNHRESASVNLGVHFVGGGLAGMT 180
N Y YE YKN + +L HR ++ G GL G+T
Sbjct: 3 NGYTYEDYKNTAEWLLSHTKHRPQVAI-----ICGSGLGGLT 39
>pdb|2A0Y|A Chain A, Structure Of Human Purine Nucleoside Phosphorylase H257d
Mutant
pdb|2OC4|A Chain A, Crystal Stucture Of Human Purine Nucleoside Phosphorylase
Mutant H257d With Imm-H
Length = 289
Score = 28.5 bits (62), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 5/42 (11%)
Query: 139 NFYCYEHYKNFLQSVLGLDNHRESASVNLGVHFVGGGLAGMT 180
N Y YE YKN + +L HR ++ G GL G+T
Sbjct: 3 NGYTYEDYKNTAEWLLSHTKHRPQVAI-----ICGSGLGGLT 39
>pdb|2A0W|A Chain A, Structure Of Human Purine Nucleoside Phosphorylase H257g
Mutant
pdb|2OC9|A Chain A, Crystal Stucture Of Human Purine Nucleoside Phosphorylase
Mutant H257g With Imm-H
Length = 289
Score = 28.5 bits (62), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 5/42 (11%)
Query: 139 NFYCYEHYKNFLQSVLGLDNHRESASVNLGVHFVGGGLAGMT 180
N Y YE YKN + +L HR ++ G GL G+T
Sbjct: 3 NGYTYEDYKNTAEWLLSHTKHRPQVAI-----ICGSGLGGLT 39
>pdb|1M73|E Chain E, Crystal Structure Of Human Pnp At 2.3a Resolution
pdb|1RCT|E Chain E, Crystal Structure Of Human Purine Nucleoside Phosphorylase
Complexed With Inosine
pdb|1V2H|E Chain E, Crystal Structure Of Human Pnp Complexed With Guanine
pdb|1V3Q|E Chain E, Structure Of Human Pnp Complexed With Ddi
pdb|1PWY|E Chain E, Crystal Structure Of Human Pnp Complexed With Acyclovir
pdb|1RFG|E Chain E, Crystal Structure Of Human Purine Nucleoside Phosphorylase
Complexed With Guanosine
pdb|1V41|E Chain E, Crystal Structure Of Human Pnp Complexed With 8-Azaguanine
pdb|1V45|E Chain E, Crystal Structure Of Human Pnp Complexed With
3-Deoxyguanosine
Length = 288
Score = 28.1 bits (61), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 5/42 (11%)
Query: 139 NFYCYEHYKNFLQSVLGLDNHRESASVNLGVHFVGGGLAGMT 180
N Y YE YKN + +L HR ++ G GL G+T
Sbjct: 2 NGYTYEDYKNTAEWLLSHTKHRPQVAI-----ICGSGLGGLT 38
>pdb|3GB9|A Chain A, Human Purine Nucleoside Phosphorylase Double Mutant
E201q,n243d Complexed With 2-fluoroadenine
pdb|3GB9|B Chain B, Human Purine Nucleoside Phosphorylase Double Mutant
E201q,n243d Complexed With 2-fluoroadenine
pdb|3GB9|C Chain C, Human Purine Nucleoside Phosphorylase Double Mutant
E201q,n243d Complexed With 2-fluoroadenine
pdb|3GGS|A Chain A, Human Purine Nucleoside Phosphorylase Double Mutant
E201q,N243d Complexed With 2-Fluoro-2'-Deoxyadenosine
pdb|3GGS|B Chain B, Human Purine Nucleoside Phosphorylase Double Mutant
E201q,N243d Complexed With 2-Fluoro-2'-Deoxyadenosine
pdb|3GGS|C Chain C, Human Purine Nucleoside Phosphorylase Double Mutant
E201q,N243d Complexed With 2-Fluoro-2'-Deoxyadenosine
Length = 311
Score = 28.1 bits (61), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 5/42 (11%)
Query: 139 NFYCYEHYKNFLQSVLGLDNHRESASVNLGVHFVGGGLAGMT 180
N Y YE YKN + +L HR ++ G GL G+T
Sbjct: 25 NGYTYEDYKNTAEWLLSHTKHRPQVAI-----ICGSGLGGLT 61
>pdb|2A0X|A Chain A, Structure Of Human Purine Nucleoside Phosphorylase H257f
Mutant
pdb|2ON6|A Chain A, Crystal Stucture Of Human Purine Nucleoside Phosphorylase
Mutant H257f With Imm-H
Length = 289
Score = 28.1 bits (61), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 5/42 (11%)
Query: 139 NFYCYEHYKNFLQSVLGLDNHRESASVNLGVHFVGGGLAGMT 180
N Y YE YKN + +L HR ++ G GL G+T
Sbjct: 3 NGYTYEDYKNTAEWLLSHTKHRPQVAI-----ICGSGLGGLT 39
>pdb|3QQ2|A Chain A, Crystal Structure Of The Beta Domain Of The Bordetella
Autotransporter Brka
pdb|3QQ2|B Chain B, Crystal Structure Of The Beta Domain Of The Bordetella
Autotransporter Brka
pdb|3QQ2|C Chain C, Crystal Structure Of The Beta Domain Of The Bordetella
Autotransporter Brka
Length = 284
Score = 27.3 bits (59), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 22/46 (47%)
Query: 144 EHYKNFLQSVLGLDNHRESASVNLGVHFVGGGLAGMTAASATYPLD 189
H + + Q+V GL+ + G + GGL G T A TYP D
Sbjct: 37 RHARAYDQTVSGLEIGLDRGWSASGGRWYAGGLLGYTYADRTYPGD 82
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.133 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,062,180
Number of Sequences: 62578
Number of extensions: 302601
Number of successful extensions: 840
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 823
Number of HSP's gapped (non-prelim): 20
length of query: 296
length of database: 14,973,337
effective HSP length: 98
effective length of query: 198
effective length of database: 8,840,693
effective search space: 1750457214
effective search space used: 1750457214
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)