Query 022477
Match_columns 296
No_of_seqs 178 out of 1461
Neff 9.2
Searched_HMMs 29240
Date Mon Mar 25 06:06:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022477.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022477hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1okc_A ADP, ATP carrier protei 100.0 1.3E-47 4.5E-52 338.0 19.8 233 57-294 4-241 (297)
2 2lck_A Mitochondrial uncouplin 100.0 2.2E-47 7.7E-52 337.4 18.6 224 63-294 4-234 (303)
3 2lck_A Mitochondrial uncouplin 100.0 4.7E-40 1.6E-44 290.5 7.3 223 9-254 57-288 (303)
4 1okc_A ADP, ATP carrier protei 100.0 3.7E-39 1.3E-43 284.0 10.0 226 8-252 59-297 (297)
5 3tgu_G UQCRQ, mitochondrial ub 44.9 39 0.0013 22.6 4.7 40 219-258 33-72 (81)
6 1pp9_G Ubiquinol-cytochrome C 42.9 47 0.0016 22.2 4.8 41 218-258 32-72 (81)
7 3f2e_A SIRV coat protein; four 32.1 32 0.0011 22.6 2.5 34 202-235 6-43 (100)
8 2acm_A Mucin-1; auto-catalytic 25.1 21 0.00071 22.2 0.6 20 103-122 40-59 (66)
9 3fbl_A Putative uncharacterize 24.4 58 0.002 20.4 2.6 28 207-234 4-35 (82)
10 4b19_A PEPA1; toxin, toxin apo 24.1 10 0.00034 20.1 -0.8 23 263-285 4-26 (30)
No 1
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=100.00 E-value=1.3e-47 Score=338.03 Aligned_cols=233 Identities=27% Similarity=0.469 Sum_probs=200.9
Q ss_pred ccchHHHHHHHHHHHHhHhhhccchHHHHHHHHhcCCccc-cccCCCccHHHHHHHHHHhhCcccccccchhhhhccccc
Q 022477 57 QIGTVQQLLAGGIAGAFSKTCTAPLARLTILFQVQGMHSD-LAALSKPSILREASRIANEEGFRAFWKGNLVTIAHRLPY 135 (296)
Q Consensus 57 ~~~~~~~~~~g~~ag~~~~~~~~Pld~vk~r~Q~~~~~~~-~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~ 135 (296)
..+.+..+++|++||+++.++++|+|+||+|+|++..... .....+++.++++++|+++||++|||||+.+++++.++.
T Consensus 4 ~~~~~~~~~aG~~ag~~~~~~~~Pld~vKtrlQ~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~ 83 (297)
T 1okc_A 4 ALSFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFPT 83 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHGGGCSSCCGGGSCCSHHHHHHHHHHHHCGGGGGTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHhcccccccccccccccHHHHHHHHHhccchhheecccHHHHHHHHHH
Confidence 3456789999999999999999999999999999864321 123467899999999999999999999999999999999
Q ss_pred cccchhhHHHHHHHHHhhhcCCCCCcccccchhhHHHhHHHHHHhHhhhcccHHHHHHHHHhhhc----CCccCCHHHHH
Q 022477 136 SSVNFYCYEHYKNFLQSVLGLDNHRESASVNLGVHFVGGGLAGMTAASATYPLDLVRTRLAAQRQ----AIYYKGIWHSF 211 (296)
Q Consensus 136 ~~~~f~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~ag~~~~~v~~P~d~vktr~q~~~~----~~~~~~~~~~~ 211 (296)
.+++|.+||.+|+.+..... ...+...+....+++|++||++++++++|+|+||+|+|++.. ...|.++++++
T Consensus 84 ~~~~f~~ye~~k~~~~~~~~---~~~~~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~ 160 (297)
T 1okc_A 84 QALNFAFKDKYKQIFLGGVD---RHKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCI 160 (297)
T ss_dssp HHHHHHHHHHHHHHHHTTCC---TTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTCSCSSHHHHH
T ss_pred HHHHHHHHHHHHHHhccccC---cccchHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHhccccCCCcCcCCCCHHHHH
Confidence 99999999999996543211 111111245678999999999999999999999999999743 34689999999
Q ss_pred HHHHHHhchhhhhhchhhhHhhHHHHHHHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHHHHHhhhhchHHHHHhccc
Q 022477 212 QTICREEGFLGLYKGLGATLLGVGPSIAISFSVYESLRSFWQSYRPNDPTVMVSLACGSLSGIASSTGQSFLNDIQSQSF 291 (296)
Q Consensus 212 ~~i~~~~G~~gly~G~~~~~~~~~~~~~~~~~~ye~l~~~~~~~~~~~~~~~~~~~~g~~ag~~a~~~t~P~dvvkt~~~ 291 (296)
++|+++||++|||||+.++++|.+|+.+++|.+||.+|+.+.+.. +.+.+..+++|++||++++++++|+||||||+|
T Consensus 161 ~~i~~~eG~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~~~~~~~--~~~~~~~~~~g~~ag~~a~~~t~P~dvvktr~q 238 (297)
T 1okc_A 161 TKIFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDPK--NVHIIVSWMIAQTVTAVAGLVSYPFDTVRRRMM 238 (297)
T ss_dssp HHHHHHHCHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHSSCGGG--CSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhccCC--CccHHHHHHHHHHHHHHHHHhcChHHHHHHHHh
Confidence 999999999999999999999999999999999999999886542 345778899999999999999999999999999
Q ss_pred ccc
Q 022477 292 FHH 294 (296)
Q Consensus 292 ~~~ 294 (296)
.+.
T Consensus 239 ~~~ 241 (297)
T 1okc_A 239 MQS 241 (297)
T ss_dssp TTT
T ss_pred hcC
Confidence 763
No 2
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=100.00 E-value=2.2e-47 Score=337.43 Aligned_cols=224 Identities=20% Similarity=0.336 Sum_probs=200.7
Q ss_pred HHHHHHHHHHhHhhhccchHHHHHHHHhcCCccc----cccCCCccHHHHHHHHHHhhCcccccccchhhhhcccccccc
Q 022477 63 QLLAGGIAGAFSKTCTAPLARLTILFQVQGMHSD----LAALSKPSILREASRIANEEGFRAFWKGNLVTIAHRLPYSSV 138 (296)
Q Consensus 63 ~~~~g~~ag~~~~~~~~Pld~vk~r~Q~~~~~~~----~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~~ 138 (296)
.+++|++||+++.++++|+|+||+|+|++..... .....+.+.++++++|+++||++|||||+.+++++.++..++
T Consensus 4 ~~~aG~~ag~~~~~~~~Pld~iKtrlQ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~i 83 (303)
T 2lck_A 4 KFLGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGPRSLYNGLVAGLQRQMSFASV 83 (303)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHSSCCTTCCSHHHHCSCSSCSCHHHHHHHHHHHHCHHHHHSSHHHHHHHHHHHHHH
T ss_pred hHHhHHHHHHHHHHHcCcHHHHHHHHHhhhccccccccccCCCCCCHHHHHHHHHHhhCHHHHHcCCHHHHHHHHHHHHH
Confidence 6899999999999999999999999999865321 113467899999999999999999999999999999999999
Q ss_pred chhhHHHHHHHHHhhhcCCCCCcccccchhhHHHhHHHHHHhHhhhcccHHHHHHHHHhhhc---CCccCCHHHHHHHHH
Q 022477 139 NFYCYEHYKNFLQSVLGLDNHRESASVNLGVHFVGGGLAGMTAASATYPLDLVRTRLAAQRQ---AIYYKGIWHSFQTIC 215 (296)
Q Consensus 139 ~f~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~ag~~~~~v~~P~d~vktr~q~~~~---~~~~~~~~~~~~~i~ 215 (296)
+|.+||.+|+.+.+.. + ..+....+++|++||++++++++|+|+||+|+|++.. ...|.+.++++++|+
T Consensus 84 ~f~~ye~~k~~~~~~~------~--~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~i~ 155 (303)
T 2lck_A 84 RIGLYDSVKQFYTKGS------E--HAGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARAGGGRRYQSTVEAYKTIA 155 (303)
T ss_dssp TTTHHHHHHHHHSCCC------S--SCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHSCSCCCSSSCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCC------c--CCcHHHHHHHHHHHHHHHHHHcCcHHHHHHHHhcccccCCCCCCCCHHHHHHHHH
Confidence 9999999999875320 1 2467789999999999999999999999999999863 346899999999999
Q ss_pred HHhchhhhhhchhhhHhhHHHHHHHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHHHHHhhhhchHHHHHhcccccc
Q 022477 216 REEGFLGLYKGLGATLLGVGPSIAISFSVYESLRSFWQSYRPNDPTVMVSLACGSLSGIASSTGQSFLNDIQSQSFFHH 294 (296)
Q Consensus 216 ~~~G~~gly~G~~~~~~~~~~~~~~~~~~ye~l~~~~~~~~~~~~~~~~~~~~g~~ag~~a~~~t~P~dvvkt~~~~~~ 294 (296)
++||++|||||+.++++|.+|+.+++|.+||.+|+.+.+....+.+...++++|++||++++++++|+||||||+|.+.
T Consensus 156 ~~eG~~glyrG~~~~l~~~~~~~~i~f~~ye~~k~~l~~~~~~~~~~~~~~~~g~~ag~~~~~~~~P~dvvktrlq~~~ 234 (303)
T 2lck_A 156 REEGIRGLWKGTSPNVARNAIVNCAELVTYDLIKDTLLKANLMTDDLPCHFTSAFGAGFCTTVIASPVDVVKTRYMNSA 234 (303)
T ss_dssp HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HhcChhhhhCCccHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHHcCHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999876545566788999999999999999999999999999764
No 3
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=100.00 E-value=4.7e-40 Score=290.51 Aligned_cols=223 Identities=25% Similarity=0.336 Sum_probs=185.2
Q ss_pred EEeeCccccccccCCc---------ccchhhHHhhcCCCCCCCCCCCCcccccccccccchHHHHHHHHHHHHhHhhhcc
Q 022477 9 VVVEGGQRALNTAHSS---------VVDASARKFLQQPQQPQHNLSVPKRSLNQHQAQIGTVQQLLAGGIAGAFSKTCTA 79 (296)
Q Consensus 9 ~~~~gg~~~~~~~~~~---------~~~~~a~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ag~~~~~~~~ 79 (296)
|+.++|.+.++++... .+.+..|+.++....+. .+..+.+..+++|++||+++.++++
T Consensus 57 i~~~eG~~glyrG~~~~l~~~~~~~~i~f~~ye~~k~~~~~~-------------~~~~~~~~~~~ag~~ag~~~~~~~~ 123 (303)
T 2lck_A 57 MVRTEGPRSLYNGLVAGLQRQMSFASVRIGLYDSVKQFYTKG-------------SEHAGIGSRLLAGSTTGALAVAVAQ 123 (303)
T ss_dssp HHHHHCHHHHHSSHHHHHHHHHHHHHHTTTHHHHHHHHHSCC-------------CSSCCHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHhhCHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHhcC-------------CcCCcHHHHHHHHHHHHHHHHHHcC
Confidence 5567788888888744 33344444443221110 0124567899999999999999999
Q ss_pred chHHHHHHHHhcCCccccccCCCccHHHHHHHHHHhhCcccccccchhhhhccccccccchhhHHHHHHHHHhhhcCCCC
Q 022477 80 PLARLTILFQVQGMHSDLAALSKPSILREASRIANEEGFRAFWKGNLVTIAHRLPYSSVNFYCYEHYKNFLQSVLGLDNH 159 (296)
Q Consensus 80 Pld~vk~r~Q~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~~~f~~~~~~~~~l~~~~~~~~~ 159 (296)
|+|+||+|+|++... .....+.+.++++++|+++||++|||||+.|++++.++..+++|.+||.+|+.+.+..
T Consensus 124 Pld~vktrlq~~~~~--~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~i~f~~ye~~k~~l~~~~----- 196 (303)
T 2lck_A 124 PTDVVKVRFQAQARA--GGGRRYQSTVEAYKTIAREEGIRGLWKGTSPNVARNAIVNCAELVTYDLIKDTLLKAN----- 196 (303)
T ss_dssp HHHHHHHHHHHSCSC--CCSSSCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTT-----
T ss_pred cHHHHHHHHhccccc--CCCCCCCCHHHHHHHHHHhcChhhhhCCccHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----
Confidence 999999999998643 1233678999999999999999999999999999999999999999999999875421
Q ss_pred CcccccchhhHHHhHHHHHHhHhhhcccHHHHHHHHHhhhcCCccCCHHHHHHHHHHHhchhhhhhchhhhHhhHHHHHH
Q 022477 160 RESASVNLGVHFVGGGLAGMTAASATYPLDLVRTRLAAQRQAIYYKGIWHSFQTICREEGFLGLYKGLGATLLGVGPSIA 239 (296)
Q Consensus 160 ~~~~~~~~~~~~~~g~~ag~~~~~v~~P~d~vktr~q~~~~~~~~~~~~~~~~~i~~~~G~~gly~G~~~~~~~~~~~~~ 239 (296)
....+....+++|++||++++++++|+|+||+|+|.+.. ..|.++++|+++|+++||++|||||+.|+++|.+|..+
T Consensus 197 --~~~~~~~~~~~~g~~ag~~~~~~~~P~dvvktrlq~~~~-~~y~~~~~~~~~i~~~eG~~glyrG~~~~~~r~~p~~~ 273 (303)
T 2lck_A 197 --LMTDDLPCHFTSAFGAGFCTTVIASPVDVVKTRYMNSAL-GQYHSAGHCALTMLRKEGPRAFYKGFMPSFLRLGSWNV 273 (303)
T ss_dssp --SCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCS-SSCCSHHHHHHHHHHSSCTHHHHSCCHHHHHHHHHHHH
T ss_pred --CCCCchHHHHHHHHHHHHHHHHHcCHHHHHHHHHHhccc-cccCCHHHHHHHHHHHcChHHhhccHHHHHHHHHhHHH
Confidence 112356678999999999999999999999999999764 35899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhc
Q 022477 240 ISFSVYESLRSFWQS 254 (296)
Q Consensus 240 ~~~~~ye~l~~~~~~ 254 (296)
++|.+||.+|+++.+
T Consensus 274 i~f~~ye~~k~~l~~ 288 (303)
T 2lck_A 274 VMFVTYEQLKRALMA 288 (303)
T ss_dssp HHHHHHHHHHSCCCC
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999988754
No 4
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=100.00 E-value=3.7e-39 Score=284.00 Aligned_cols=226 Identities=20% Similarity=0.261 Sum_probs=177.8
Q ss_pred eEEeeCccccccccCCc---------ccchhhHHhhcCCCCCCCCCCCCcccccccccccchHHHHHHHHHHHHhHhhhc
Q 022477 8 GVVVEGGQRALNTAHSS---------VVDASARKFLQQPQQPQHNLSVPKRSLNQHQAQIGTVQQLLAGGIAGAFSKTCT 78 (296)
Q Consensus 8 ~~~~~gg~~~~~~~~~~---------~~~~~a~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ag~~~~~~~ 78 (296)
.|+.++|.+.++++... .+.+..|+.++....... . ..+....+.+..+++|++||+++.+++
T Consensus 59 ~i~~~eG~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~~~~~~~-----~---~~~~~~~~~~~~~~ag~~ag~~~~~~~ 130 (297)
T 1okc_A 59 RIPKEQGFLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGV-----D---RHKQFWRYFAGNLASGGAAGATSLCFV 130 (297)
T ss_dssp HHHHHHCGGGGGTTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-----C---TTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccchhheecccHHHHHHHHHHHHHHHHHHHHHHHHhcccc-----C---cccchHHHHHHHHHHHHHHHHHHHHHh
Confidence 35567889999998743 334445554443110000 0 001111245678999999999999999
Q ss_pred cchHHHHHHHHhcCCccccccCCCccHHHHHHHHHHhhCcccccccchhhhhccccccccchhhHHHHHHHHHhhhcCCC
Q 022477 79 APLARLTILFQVQGMHSDLAALSKPSILREASRIANEEGFRAFWKGNLVTIAHRLPYSSVNFYCYEHYKNFLQSVLGLDN 158 (296)
Q Consensus 79 ~Pld~vk~r~Q~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~~~f~~~~~~~~~l~~~~~~~~ 158 (296)
+|+|+||+|+|++.... .....+.+.++++++|+++||++|||||+.|++++.+|..+++|.+||.+|+.+.+.
T Consensus 131 ~Pld~vktrlq~~~~~~-~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~~~~~~----- 204 (297)
T 1okc_A 131 YPLDFARTRLAADVGKG-AAQREFTGLGNCITKIFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDP----- 204 (297)
T ss_dssp HHHHHHHHHHHHCCCSS-TTTCSCSSHHHHHHHHHHHHCHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHSSCGG-----
T ss_pred CcHHHHHHHHhccccCC-CcCcCCCCHHHHHHHHHHhccHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhccC-----
Confidence 99999999999985321 123467899999999999999999999999999999999999999999999965321
Q ss_pred CCcccccchhhHHHhHHHHHHhHhhhcccHHHHHHHHHhhhc----CCccCCHHHHHHHHHHHhchhhhhhchhhhHhhH
Q 022477 159 HRESASVNLGVHFVGGGLAGMTAASATYPLDLVRTRLAAQRQ----AIYYKGIWHSFQTICREEGFLGLYKGLGATLLGV 234 (296)
Q Consensus 159 ~~~~~~~~~~~~~~~g~~ag~~~~~v~~P~d~vktr~q~~~~----~~~~~~~~~~~~~i~~~~G~~gly~G~~~~~~~~ 234 (296)
...+....+++|+++|++++++++|+|+||+|+|++.. ...|.++++|+++|+++||++|||||+.|+++|.
T Consensus 205 ----~~~~~~~~~~~g~~ag~~a~~~t~P~dvvktr~q~~~~~~~~~~~y~~~~~~~~~i~~~eG~~glyrG~~~~~~r~ 280 (297)
T 1okc_A 205 ----KNVHIIVSWMIAQTVTAVAGLVSYPFDTVRRRMMMQSGRKGADIMYTGTVDCWRKIAKDEGPKAFFKGAWSNVLRG 280 (297)
T ss_dssp ----GCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCGGGCSCSSHHHHHHHHHHHHCGGGGGTTHHHHHHHH
T ss_pred ----CCccHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHcCcCeEecchHHHHHhh
Confidence 12356778999999999999999999999999998743 2468999999999999999999999999999996
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 022477 235 GPSIAISFSVYESLRSFW 252 (296)
Q Consensus 235 ~~~~~~~~~~ye~l~~~~ 252 (296)
+..+++|.+||.+|+++
T Consensus 281 -~~~~~~f~~ye~~k~~l 297 (297)
T 1okc_A 281 -MGGAFVLVLYDEIKKFV 297 (297)
T ss_dssp -HHHHHHHHHHHTC----
T ss_pred -ccceeeehHHHHHHhhC
Confidence 57899999999998753
No 5
>3tgu_G UQCRQ, mitochondrial ubiquinol-cytochrome C reductase UB binding protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein; HET: HEM WF3 UQ CDL PEE HEC BOG; 2.70A {Gallus gallus} PDB: 3cwb_G* 3h1i_G* 3h1h_G* 3h1k_G* 3h1l_G* 3h1j_G* 3l71_G* 3l72_G* 3l73_G* 3l74_G* 3l75_G* 3l70_G*
Probab=44.85 E-value=39 Score=22.57 Aligned_cols=40 Identities=8% Similarity=0.265 Sum_probs=31.4
Q ss_pred chhhhhhchhhhHhhHHHHHHHHHHHHHHHHHHHhccCCC
Q 022477 219 GFLGLYKGLGATLLGVGPSIAISFSVYESLRSFWQSYRPN 258 (296)
Q Consensus 219 G~~gly~G~~~~~~~~~~~~~~~~~~ye~l~~~~~~~~~~ 258 (296)
|+...+|-+...++..+|..++.+.+|++.++..+.....
T Consensus 33 ~i~N~~RR~~~q~l~v~pPfi~~Y~i~~Wa~~~ne~l~rK 72 (81)
T 3tgu_G 33 ALPNVWRRFSSQVFKVAPPFLGAYLLYSWGTQEFERLKRK 72 (81)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred hhhHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHhCC
Confidence 4555566677889999999999999999999887655443
No 6
>1pp9_G Ubiquinol-cytochrome C reductase complex ubiquino protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: f.23.13.1 PDB: 1bgy_G* 1be3_G* 1l0n_G* 1ntk_G* 1ntm_G* 1ntz_G* 1nu1_G* 1l0l_G* 1ppj_G* 1sqb_G* 1sqp_G* 1sqq_G* 1sqv_G* 1sqx_G* 2a06_G* 2fyu_G* 2ybb_G* 1bcc_G* 2bcc_G* 3bcc_G* ...
Probab=42.91 E-value=47 Score=22.20 Aligned_cols=41 Identities=17% Similarity=0.276 Sum_probs=32.9
Q ss_pred hchhhhhhchhhhHhhHHHHHHHHHHHHHHHHHHHhccCCC
Q 022477 218 EGFLGLYKGLGATLLGVGPSIAISFSVYESLRSFWQSYRPN 258 (296)
Q Consensus 218 ~G~~gly~G~~~~~~~~~~~~~~~~~~ye~l~~~~~~~~~~ 258 (296)
.|+...+|-+.-.++..+|..++.+.+|++.++..+.....
T Consensus 32 ~~i~n~~RR~~~~~l~v~pPfv~~Y~i~~Wa~~~~e~~~rK 72 (81)
T 1pp9_G 32 KGIPNVLRRTRACILRVAPPFVAFYLVYTWGTQEFEKSKRK 72 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSS
T ss_pred hhhhHHHHHHHhcceeeehhHHHHHHHHHHHHHHHHHHhCC
Confidence 46666777788888899999999999999999887655443
No 7
>3f2e_A SIRV coat protein; four helix bundle, virus coat protein, viral protein; HET: CIT; 1.67A {Sulfolobus islandicus rudivirus 1 variorganism_taxid}
Probab=32.12 E-value=32 Score=22.61 Aligned_cols=34 Identities=12% Similarity=0.294 Sum_probs=25.7
Q ss_pred CccCCHHHHHHHHHHHhch----hhhhhchhhhHhhHH
Q 022477 202 IYYKGIWHSFQTICREEGF----LGLYKGLGATLLGVG 235 (296)
Q Consensus 202 ~~~~~~~~~~~~i~~~~G~----~gly~G~~~~~~~~~ 235 (296)
+++.+.-+-+..++.+-|+ +.+|.||+..+.|..
T Consensus 6 pkftsvne~vsavltqygvtgpnraiyqgfglkvaral 43 (100)
T 3f2e_A 6 PKFTAVAEQVSAVLSQYGITGPNRAIYQGFGLKVARAL 43 (100)
T ss_dssp --CHHHHHHHHHHHHHHTCCGGGHHHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHhcCCCccHHHHhhhhHHHHHHH
Confidence 3467777778888888886 678999999888764
No 8
>2acm_A Mucin-1; auto-catalytic proteolysis, structural protein; NMR {Homo sapiens}
Probab=25.10 E-value=21 Score=22.24 Aligned_cols=20 Identities=20% Similarity=0.187 Sum_probs=16.7
Q ss_pred ccHHHHHHHHHHhhCccccc
Q 022477 103 PSILREASRIANEEGFRAFW 122 (296)
Q Consensus 103 ~~~~~~~~~i~~~eG~~gly 122 (296)
+++...+.+||+++++.||+
T Consensus 40 r~is~L~lqIykq~~FLgl~ 59 (66)
T 2acm_A 40 RDISEMFLQIYKQGGFLGLS 59 (66)
T ss_dssp HHHHHHHHHHCTTTTEEEEE
T ss_pred HHHHHHHHHHHccCCeeeee
Confidence 46778888999999999885
No 9
>3fbl_A Putative uncharacterized protein; AFV1, archaeal virus, extremophiles, lipothrixviridae, structural protein, DNA-binding protein; 1.95A {Acidianus filamentous virus 1}
Probab=24.44 E-value=58 Score=20.36 Aligned_cols=28 Identities=29% Similarity=0.704 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHhchh----hhhhchhhhHhhH
Q 022477 207 IWHSFQTICREEGFL----GLYKGLGATLLGV 234 (296)
Q Consensus 207 ~~~~~~~i~~~~G~~----gly~G~~~~~~~~ 234 (296)
..-.+++|.+.+|+. |+|-.|+-.+++.
T Consensus 4 lrlaikeicktdgipnikwgmyiafgekllks 35 (82)
T 3fbl_A 4 LRLAIKEICKTDGIPNIKWGMYIAFGEKLLKS 35 (82)
T ss_dssp HHHHHHHHHHHTTCCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCCCCcchhHHHHHHHHHHHHH
Confidence 345688999999974 5555555555544
No 10
>4b19_A PEPA1; toxin, toxin apoptotic peptide, apoptosis; NMR {Staphylococcus aureus}
Probab=24.07 E-value=10 Score=20.14 Aligned_cols=23 Identities=22% Similarity=0.234 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHhhhhchHHH
Q 022477 263 MVSLACGSLSGIASSTGQSFLND 285 (296)
Q Consensus 263 ~~~~~~g~~ag~~a~~~t~P~dv 285 (296)
+.++.+-+++|++.++++|.++.
T Consensus 4 fv~iia~visGcivalF~hWL~~ 26 (30)
T 4b19_A 4 FVHIIAPVISGCAIAFFSYWLSR 26 (30)
T ss_dssp GTSSTTTTHHHHHHHHHHHHHHH
T ss_pred ehhhHHHHHHHHHHHHHHHHHHh
Confidence 34556678899999999998875
Done!