BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022480
(296 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q0J709|UP12_ORYSJ Unknown protein DS12 from 2D-PAGE of leaf, chloroplastic OS=Oryza
sativa subsp. japonica GN=Os08g0242700 PE=2 SV=2
Length = 283
Score = 273 bits (697), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 129/217 (59%), Positives = 168/217 (77%)
Query: 80 SDQDADYIPMPHVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEG 139
S + D +P P V+IDQDS+ DATIV+++ GDRLG L+DTMNALK+LGL+V K +V +
Sbjct: 67 SSSNTDTVPTPKVIIDQDSDPDATIVEITLGDRLGDLLDTMNALKNLGLNVVKASVCLDS 126
Query: 140 SVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLKYHPESSEQLAMGEAFGIKAPEKK 199
+ K K IT+L TGRK+ +P+LLE +RLTIINN+++YHPE+S QLA+G FG + P +
Sbjct: 127 TGKHIKLAITKLSTGRKIGEPELLEAVRLTIINNMIQYHPEASSQLALGATFGPEPPTEL 186
Query: 200 LDVDIATHIHVKEDGPKRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKD 259
+DVDIATHI + +DGP RSLL +ETADRPGLLV+++KII D+N+ V+S E DTEGL+AK
Sbjct: 187 VDVDIATHIDIYDDGPDRSLLVVETADRPGLLVDLVKIIDDINITVQSGEFDTEGLLAKA 246
Query: 260 KFHVSYGGAALNSSLSQVLVNCLRYYLRRPETDIDSY 296
KFHVSY G L +L QVL N LRY+LRRP T+ SY
Sbjct: 247 KFHVSYRGKPLIKALQQVLANSLRYFLRRPTTEEGSY 283
>sp|P83643|UP12_ORYSI Unknown protein DS12 from 2D-PAGE of leaf, chloroplastic OS=Oryza
sativa subsp. indica GN=OsI_027381 PE=1 SV=2
Length = 283
Score = 273 bits (697), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 129/217 (59%), Positives = 168/217 (77%)
Query: 80 SDQDADYIPMPHVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEG 139
S + D +P P V+IDQDS+ DATIV+++ GDRLG L+DTMNALK+LGL+V K +V +
Sbjct: 67 SSSNTDTVPTPKVIIDQDSDPDATIVEITLGDRLGDLLDTMNALKNLGLNVVKASVCLDS 126
Query: 140 SVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLKYHPESSEQLAMGEAFGIKAPEKK 199
+ K K IT+L TGRK+ +P+LLE +RLTIINN+++YHPE+S QLA+G FG + P +
Sbjct: 127 TGKHIKLAITKLSTGRKIGEPELLEAVRLTIINNMIQYHPEASSQLALGATFGPEPPTEL 186
Query: 200 LDVDIATHIHVKEDGPKRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKD 259
+DVDIATHI + +DGP RSLL +ETADRPGLLV+++KII D+N+ V+S E DTEGL+AK
Sbjct: 187 VDVDIATHIDIYDDGPDRSLLVVETADRPGLLVDLVKIIDDINITVQSGEFDTEGLLAKA 246
Query: 260 KFHVSYGGAALNSSLSQVLVNCLRYYLRRPETDIDSY 296
KFHVSY G L +L QVL N LRY+LRRP T+ SY
Sbjct: 247 KFHVSYRGKPLIKALQQVLANSLRYFLRRPTTEEGSY 283
>sp|Q7NTY6|GLND_CHRVO [Protein-PII] uridylyltransferase OS=Chromobacterium violaceum
(strain ATCC 12472 / DSM 30191 / JCM 1249 / NBRC 12614 /
NCIMB 9131 / NCTC 9757) GN=glnD PE=3 SV=1
Length = 856
Score = 49.3 bits (116), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/70 (44%), Positives = 40/70 (57%), Gaps = 7/70 (10%)
Query: 219 LLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGGAALNS-----S 273
+L I DRPGLL I K++AD ++V SA+I T G A+D F VS GAAL +
Sbjct: 788 ILSIVAGDRPGLLARIAKVLADYRLNVRSAKIMTLGGRAEDSFQVS--GAALKDDKTALA 845
Query: 274 LSQVLVNCLR 283
L L+ LR
Sbjct: 846 LEAALITALR 855
>sp|Q9AC53|GLND_CAUCR [Protein-PII] uridylyltransferase OS=Caulobacter crescentus (strain
ATCC 19089 / CB15) GN=glnD PE=3 SV=1
Length = 940
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/172 (28%), Positives = 70/172 (40%), Gaps = 16/172 (9%)
Query: 99 NSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGR--K 156
S+A V ++ DR G D A+ LG +V V T + F + TG
Sbjct: 732 GSNAAEVVIAAKDRRGLFADLALAISSLGGNVVGARVFTSRQGQALDVFYVQDVTGAPFG 791
Query: 157 VEDPDLLERIRLTI----INNLLKYHPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKE 212
E+P L R+ + + L P + AF I AP +D D + V E
Sbjct: 792 CENPRALRRLADALEAAGKGDALAVEPRRGSEQTRAAAFAI-APSVTIDNDASNDATVVE 850
Query: 213 DGPKRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVS 264
+ DRPGLL + K +AD + ++SA ID G A D F+V
Sbjct: 851 ASGR---------DRPGLLHALAKTLADSALSIQSAHIDGYGERAVDAFYVQ 893
Score = 36.2 bits (82), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 34/72 (47%)
Query: 84 ADYIPMPHVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQ 143
A + P V ID D+++DAT+V+ S DR G L L D L + ++ G
Sbjct: 828 AAFAIAPSVTIDNDASNDATVVEASGRDRPGLLHALAKTLADSALSIQSAHIDGYGERAV 887
Query: 144 TKFFITRLDTGR 155
F++ + G+
Sbjct: 888 DAFYVQTTEGGK 899
>sp|B8GWX0|GLND_CAUCN [Protein-PII] uridylyltransferase OS=Caulobacter crescentus (strain
NA1000 / CB15N) GN=glnD PE=3 SV=1
Length = 940
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/172 (28%), Positives = 70/172 (40%), Gaps = 16/172 (9%)
Query: 99 NSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGR--K 156
S+A V ++ DR G D A+ LG +V V T + F + TG
Sbjct: 732 GSNAAEVVIAAKDRRGLFADLALAISSLGGNVVGARVFTSRQGQALDVFYVQDVTGAPFG 791
Query: 157 VEDPDLLERIRLTI----INNLLKYHPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKE 212
E+P L R+ + + L P + AF I AP +D D + V E
Sbjct: 792 CENPRALRRLADALEAAGKGDALAVEPRRGSEQTRAAAFAI-APSVTIDNDASNDATVVE 850
Query: 213 DGPKRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVS 264
+ DRPGLL + K +AD + ++SA ID G A D F+V
Sbjct: 851 ASGR---------DRPGLLHALAKTLADSALSIQSAHIDGYGERAVDAFYVQ 893
Score = 36.2 bits (82), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 34/72 (47%)
Query: 84 ADYIPMPHVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQ 143
A + P V ID D+++DAT+V+ S DR G L L D L + ++ G
Sbjct: 828 AAFAIAPSVTIDNDASNDATVVEASGRDRPGLLHALAKTLADSALSIQSAHIDGYGERAV 887
Query: 144 TKFFITRLDTGR 155
F++ + G+
Sbjct: 888 DAFYVQTTEGGK 899
>sp|Q5FPT6|GLND_GLUOX [Protein-PII] uridylyltransferase OS=Gluconobacter oxydans (strain
621H) GN=glnD PE=3 SV=1
Length = 949
Score = 45.4 bits (106), Expect = 5e-04, Method: Composition-based stats.
Identities = 28/91 (30%), Positives = 49/91 (53%), Gaps = 2/91 (2%)
Query: 84 ADYIPMPHVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQ 143
A ++P P V+ID ++ T+++++ DR G L D +AL L ++ + T G ++
Sbjct: 851 AIHVP-PRVVIDNTASDRHTVIEVNGRDRPGLLHDVTSALSSASLQISSAHITTYG-MRA 908
Query: 144 TKFFITRLDTGRKVEDPDLLERIRLTIINNL 174
F R G K+ DP L R+R T++ +L
Sbjct: 909 VDVFYVRDLLGMKITDPVRLARLRETLLASL 939
Score = 34.7 bits (78), Expect = 0.75, Method: Composition-based stats.
Identities = 15/48 (31%), Positives = 29/48 (60%)
Query: 216 KRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHV 263
+ +++ + DRPGLL ++ ++ ++ + SA I T G+ A D F+V
Sbjct: 867 RHTVIEVNGRDRPGLLHDVTSALSSASLQISSAHITTYGMRAVDVFYV 914
>sp|Q9RAE4|GLND_RHILV [Protein-PII] uridylyltransferase OS=Rhizobium leguminosarum bv.
viciae GN=glnD PE=3 SV=2
Length = 944
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 34/49 (69%)
Query: 216 KRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVS 264
K +++ +E DRPGLL EI +++D+++D++SA I T G D F+V+
Sbjct: 836 KFTVIEVECLDRPGLLSEITAVLSDLSLDIQSARITTFGEKVIDTFYVT 884
Score = 31.6 bits (70), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Query: 86 YIPMPHVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTK 145
++ P V I ++ T++++ DR G L + L DL LD+ + T G
Sbjct: 821 FVIPPSVNITNSLSNKFTVIEVECLDRPGLLSEITAVLSDLSLDIQSARITTFGEKVIDT 880
Query: 146 FFITRLDTGRKV 157
F++T L G+K+
Sbjct: 881 FYVTDL-VGQKI 891
>sp|Q53245|GLND_RHITR [Protein-PII] uridylyltransferase OS=Rhizobium tropici GN=glnD PE=3
SV=2
Length = 948
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 34/49 (69%)
Query: 216 KRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVS 264
K +++ +E DRPGLL EI +++D+++D++SA I T G D F+V+
Sbjct: 837 KFTVIEVECLDRPGLLSEITAVLSDLSLDIQSARITTFGEKVIDTFYVA 885
Score = 32.0 bits (71), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
Query: 86 YIPMPHVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTK 145
++ P V+I ++ T++++ DR G L + L DL LD+ + T G
Sbjct: 822 FVIPPSVIITNSLSNKFTVIEVECLDRPGLLSEITAVLSDLSLDIQSARITTFGEKVIDT 881
Query: 146 FFITRLDTGRKVEDPD 161
F++ L G+K+ + +
Sbjct: 882 FYVADL-VGQKISNEN 896
>sp|Q5LWE5|GLND_RUEPO [Protein-PII] uridylyltransferase OS=Ruegeria pomeroyi (strain ATCC
700808 / DSM 15171 / DSS-3) GN=glnD PE=3 SV=1
Length = 908
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 77/175 (44%), Gaps = 11/175 (6%)
Query: 92 VLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDV--AKGTVNTEGSVKQTKFFIT 149
+ +D D + DAT + D G AL +G +V A+ +G V T F
Sbjct: 707 IRLDPDEDRDATRACFAMADHPGIFSRMAGALALVGANVVDARSYTTKDGYV--TDAFWI 764
Query: 150 RLDTGRKVEDPDLLERIRLTIINNLLKYHPESSEQLAMGEAFGIKAPEKKLDVDIATHIH 209
+ G E L R+ I+ L E + A+ IK EK +V THI
Sbjct: 765 QDAEGHPYEAARL-PRLSQMILKTL---KGEVVARDALKSRDKIKKREKAFNV--PTHIT 818
Query: 210 VKEDGPK-RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHV 263
+G +++ ++T DRPGLL ++ + +A NV + +A I T G D F+V
Sbjct: 819 FDNEGSDIYTIIEVDTRDRPGLLYDLARALAAANVYIANAVIATYGEQVVDSFYV 873
>sp|Q8UIF1|GLND_AGRT5 [Protein-PII] uridylyltransferase OS=Agrobacterium tumefaciens
(strain C58 / ATCC 33970) GN=glnD PE=3 SV=1
Length = 942
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 44/80 (55%), Gaps = 2/80 (2%)
Query: 216 KRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVS--YGGAALNSS 273
K +++ +E DRPGLL ++ +IAD+++D+ SA I T G D F+V+ +G N +
Sbjct: 838 KFTVIEVECLDRPGLLADMTAVIADLSLDIHSARITTFGEKVIDTFYVTDLFGQKVTNDN 897
Query: 274 LSQVLVNCLRYYLRRPETDI 293
+ L+ + E ++
Sbjct: 898 RQASIAQRLKAVMSEQEDEL 917
Score = 32.7 bits (73), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 39/82 (47%), Gaps = 2/82 (2%)
Query: 76 TPLKSDQDADYIPMPHVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTV 135
T + + A IP P V I ++ T++++ DR G L D + DL LD+ +
Sbjct: 814 TKSRRKKSAFTIP-PSVTISNGLSNKFTVIEVECLDRPGLLADMTAVIADLSLDIHSARI 872
Query: 136 NTEGSVKQTKFFITRLDTGRKV 157
T G F++T L G+KV
Sbjct: 873 TTFGEKVIDTFYVTDL-FGQKV 893
>sp|Q3J5H6|GLND_RHOS4 [Protein-PII] uridylyltransferase OS=Rhodobacter sphaeroides
(strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158)
GN=glnD PE=3 SV=1
Length = 930
Score = 43.1 bits (100), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 75/174 (43%), Gaps = 11/174 (6%)
Query: 94 IDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDT 153
+D D + DAT + D G AL +G +V T T F +
Sbjct: 732 LDPDPDRDATRACFALADHPGIFSRLAGALALVGANVVDARTYTTKDGYATAVFWIQDSE 791
Query: 154 GRKVEDPDLLERI-RLT-IINNLLKYHPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVK 211
G P + R+ RLT +I+ LK + E L + K +++ THI
Sbjct: 792 G----SPYEISRLPRLTSMIDKTLKGEVVAREALKDRD----KLKKREAQFRFPTHIAFD 843
Query: 212 EDGPK-RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVS 264
+G +++ ++T DRPGLL ++ + +A N+ + SA I T G D F+V
Sbjct: 844 NEGSDIYTIIEVDTRDRPGLLYDLTRTLAANNIYIASAVIATYGAQVVDSFYVK 897
>sp|Q1QDM9|GLND_PSYCK [Protein-PII] uridylyltransferase OS=Psychrobacter cryohalolentis
(strain K5) GN=glnD PE=3 SV=1
Length = 913
Score = 42.7 bits (99), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Query: 194 KAPEKKLDVDIATHIHVK-EDGPKRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDT 252
+ P + D+AT I+ D + ++ +ET D+PGLL + ++ ++V +A I T
Sbjct: 812 RIPRQLKHFDVATTINFDFNDASNQHIMSLETLDQPGLLARVGQVFLQQQIEVHAARITT 871
Query: 253 EGLVAKDKFHVS 264
G A+D F++S
Sbjct: 872 LGERAEDMFYIS 883
>sp|Q5ZUS2|GLND_LEGPH [Protein-PII] uridylyltransferase OS=Legionella pneumophila subsp.
pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM
7513) GN=glnD PE=3 SV=1
Length = 861
Score = 41.6 bits (96), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 44/78 (56%), Gaps = 2/78 (2%)
Query: 203 DIATHIHVKEDGPK-RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKF 261
++ T I+ +D ++ L++ T DRPGLL I ++ +N+ + +A+I T G +D F
Sbjct: 771 NVKTQINFIDDNTNHQTQLFLVTNDRPGLLATISRVFLTLNIHLHNAKIATAGERVEDMF 830
Query: 262 HVS-YGGAALNSSLSQVL 278
++S G +LN +L
Sbjct: 831 YISNQTGYSLNHEEKTIL 848
>sp|A5ICM0|GLND_LEGPC [Protein-PII] uridylyltransferase OS=Legionella pneumophila (strain
Corby) GN=glnD PE=3 SV=1
Length = 861
Score = 41.6 bits (96), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 44/78 (56%), Gaps = 2/78 (2%)
Query: 203 DIATHIHVKEDGPK-RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKF 261
++ T I+ +D ++ L++ T DRPGLL I ++ +N+ + +A+I T G +D F
Sbjct: 771 NVKTQINFIDDNTNHQTQLFLVTNDRPGLLATISRVFLTLNIHLHNAKIATAGERVEDMF 830
Query: 262 HVS-YGGAALNSSLSQVL 278
++S G +LN +L
Sbjct: 831 YISNQTGYSLNHEEKTIL 848
>sp|Q5X4J1|GLND_LEGPA [Protein-PII] uridylyltransferase OS=Legionella pneumophila (strain
Paris) GN=glnD PE=3 SV=1
Length = 861
Score = 41.6 bits (96), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 44/78 (56%), Gaps = 2/78 (2%)
Query: 203 DIATHIHVKEDGPK-RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKF 261
++ T I+ +D ++ L++ T DRPGLL I ++ +N+ + +A+I T G +D F
Sbjct: 771 NVKTQINFIDDNTNHQTQLFLVTNDRPGLLATISRVFLTLNIHLHNAKIATAGERVEDMF 830
Query: 262 HVS-YGGAALNSSLSQVL 278
++S G +LN +L
Sbjct: 831 YISNQTGYSLNHEEKTIL 848
>sp|B0CIQ3|GLND_BRUSI [Protein-PII] uridylyltransferase OS=Brucella suis (strain ATCC
23445 / NCTC 10510) GN=glnD PE=3 SV=1
Length = 934
Score = 41.6 bits (96), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 33/49 (67%)
Query: 216 KRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVS 264
K +++ +E DRPGLL E+ +I+D+++D+ SA I T G D F+V+
Sbjct: 845 KFTVIEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGEKVIDSFYVT 893
Score = 32.3 bits (72), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Query: 90 PHVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFIT 149
P V I+ ++ T++++ DR G L + + DL LD+A + T G F++T
Sbjct: 834 PRVEINNTLSNKFTVIEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGEKVIDSFYVT 893
Query: 150 RLDTGRKVED 159
L G K+ +
Sbjct: 894 DL-VGHKISN 902
>sp|Q4FUP5|GLND_PSYA2 [Protein-PII] uridylyltransferase OS=Psychrobacter arcticus (strain
DSM 17307 / 273-4) GN=glnD PE=3 SV=1
Length = 915
Score = 41.6 bits (96), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Query: 194 KAPEKKLDVDIATHIHVK-EDGPKRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDT 252
+ P + D+ T I+ + D + ++ +ET D+PGLL + ++ ++V +A I T
Sbjct: 814 RIPRQLKHFDVETTINFEFNDASSQHIMSLETLDQPGLLARVGQVFLQQQIEVHAARITT 873
Query: 253 EGLVAKDKFHVS 264
G A+D F++S
Sbjct: 874 LGERAEDMFYIS 885
>sp|A5VN81|GLND_BRUO2 [Protein-PII] uridylyltransferase OS=Brucella ovis (strain ATCC
25840 / 63/290 / NCTC 10512) GN=glnD PE=3 SV=1
Length = 934
Score = 41.6 bits (96), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 33/49 (67%)
Query: 216 KRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVS 264
K +++ +E DRPGLL E+ +I+D+++D+ SA I T G D F+V+
Sbjct: 845 KFTVIEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGEKVIDSFYVT 893
Score = 32.3 bits (72), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Query: 90 PHVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFIT 149
P V I+ ++ T++++ DR G L + + DL LD+A + T G F++T
Sbjct: 834 PRVEINNTLSNKFTVIEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGEKVIDSFYVT 893
Query: 150 RLDTGRKVED 159
L G K+ +
Sbjct: 894 DL-VGHKISN 902
>sp|Q8YES3|GLND_BRUME [Protein-PII] uridylyltransferase OS=Brucella melitensis biotype 1
(strain 16M / ATCC 23456 / NCTC 10094) GN=glnD PE=3 SV=1
Length = 934
Score = 41.6 bits (96), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 33/49 (67%)
Query: 216 KRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVS 264
K +++ +E DRPGLL E+ +I+D+++D+ SA I T G D F+V+
Sbjct: 845 KFTVIEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGEKVIDSFYVT 893
Score = 32.3 bits (72), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Query: 90 PHVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFIT 149
P V I+ ++ T++++ DR G L + + DL LD+A + T G F++T
Sbjct: 834 PRVEINNTLSNKFTVIEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGEKVIDSFYVT 893
Query: 150 RLDTGRKVED 159
L G K+ +
Sbjct: 894 DL-VGHKISN 902
>sp|Q57FN0|GLND_BRUAB [Protein-PII] uridylyltransferase OS=Brucella abortus biovar 1
(strain 9-941) GN=glnD PE=3 SV=1
Length = 934
Score = 41.6 bits (96), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 33/49 (67%)
Query: 216 KRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVS 264
K +++ +E DRPGLL E+ +I+D+++D+ SA I T G D F+V+
Sbjct: 845 KFTVIEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGEKVIDSFYVT 893
Score = 32.3 bits (72), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Query: 90 PHVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFIT 149
P V I+ ++ T++++ DR G L + + DL LD+A + T G F++T
Sbjct: 834 PRVEINNTLSNKFTVIEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGEKVIDSFYVT 893
Query: 150 RLDTGRKVED 159
L G K+ +
Sbjct: 894 DL-VGHKISN 902
>sp|Q2YNZ1|GLND_BRUA2 [Protein-PII] uridylyltransferase OS=Brucella abortus (strain 2308)
GN=glnD PE=3 SV=1
Length = 934
Score = 41.6 bits (96), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 33/49 (67%)
Query: 216 KRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVS 264
K +++ +E DRPGLL E+ +I+D+++D+ SA I T G D F+V+
Sbjct: 845 KFTVIEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGEKVIDSFYVT 893
Score = 32.3 bits (72), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Query: 90 PHVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFIT 149
P V I+ ++ T++++ DR G L + + DL LD+A + T G F++T
Sbjct: 834 PRVEINNTLSNKFTVIEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGEKVIDSFYVT 893
Query: 150 RLDTGRKVED 159
L G K+ +
Sbjct: 894 DL-VGHKISN 902
>sp|B2S8D8|GLND_BRUA1 [Protein-PII] uridylyltransferase OS=Brucella abortus (strain S19)
GN=glnD PE=3 SV=1
Length = 934
Score = 41.6 bits (96), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 33/49 (67%)
Query: 216 KRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVS 264
K +++ +E DRPGLL E+ +I+D+++D+ SA I T G D F+V+
Sbjct: 845 KFTVIEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGEKVIDSFYVT 893
Score = 32.3 bits (72), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Query: 90 PHVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFIT 149
P V I+ ++ T++++ DR G L + + DL LD+A + T G F++T
Sbjct: 834 PRVEINNTLSNKFTVIEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGEKVIDSFYVT 893
Query: 150 RLDTGRKVED 159
L G K+ +
Sbjct: 894 DL-VGHKISN 902
>sp|Q5WVX6|GLND_LEGPL [Protein-PII] uridylyltransferase OS=Legionella pneumophila (strain
Lens) GN=glnD PE=3 SV=1
Length = 861
Score = 41.6 bits (96), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 44/78 (56%), Gaps = 2/78 (2%)
Query: 203 DIATHIHVKEDGPK-RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKF 261
++ T I+ +D ++ L++ T DRPGLL I ++ +N+ + +A+I T G +D F
Sbjct: 771 NVKTQINFIDDNTNHQTQLFLVTNDRPGLLATISRVFLTLNIHLHNAKIATAGERVEDMF 830
Query: 262 HVS-YGGAALNSSLSQVL 278
++S G +LN +L
Sbjct: 831 YISNQTGYSLNHEEKTIL 848
>sp|Q8G312|GLND_BRUSU [Protein-PII] uridylyltransferase OS=Brucella suis biovar 1 (strain
1330) GN=glnD PE=3 SV=1
Length = 934
Score = 41.6 bits (96), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 33/49 (67%)
Query: 216 KRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVS 264
K +++ +E DRPGLL E+ +I+D+++D+ SA I T G D F+V+
Sbjct: 845 KFTVIEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGEKVIDSFYVT 893
Score = 32.3 bits (72), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Query: 90 PHVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFIT 149
P V I+ ++ T++++ DR G L + + DL LD+A + T G F++T
Sbjct: 834 PRVEINNTLSNKFTVIEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGEKVIDSFYVT 893
Query: 150 RLDTGRKVED 159
L G K+ +
Sbjct: 894 DL-VGHKISN 902
>sp|C0RGK0|GLND_BRUMB [Protein-PII] uridylyltransferase OS=Brucella melitensis biotype 2
(strain ATCC 23457) GN=glnD PE=3 SV=1
Length = 934
Score = 41.6 bits (96), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 33/49 (67%)
Query: 216 KRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVS 264
K +++ +E DRPGLL E+ +I+D+++D+ SA I T G D F+V+
Sbjct: 845 KFTVIEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGEKVIDSFYVT 893
Score = 32.3 bits (72), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Query: 90 PHVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFIT 149
P V I+ ++ T++++ DR G L + + DL LD+A + T G F++T
Sbjct: 834 PRVEINNTLSNKFTVIEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGEKVIDSFYVT 893
Query: 150 RLDTGRKVED 159
L G K+ +
Sbjct: 894 DL-VGHKISN 902
>sp|A6WV84|GLND_OCHA4 [Protein-PII] uridylyltransferase OS=Ochrobactrum anthropi (strain
ATCC 49188 / DSM 6882 / NCTC 12168) GN=glnD PE=3 SV=1
Length = 934
Score = 41.2 bits (95), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 33/49 (67%)
Query: 216 KRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVS 264
K +++ +E DRPGLL E+ +I+D+++D+ SA I T G D F+V+
Sbjct: 845 KFTVIEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGEKVIDSFYVT 893
Score = 32.7 bits (73), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 40/85 (47%), Gaps = 1/85 (1%)
Query: 90 PHVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFIT 149
P V I+ ++ T++++ DR G L + + DL LD+A + T G F++T
Sbjct: 834 PRVEINNTLSNKFTVIEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGEKVIDSFYVT 893
Query: 150 RLDTGRKVEDPDLLERIRLTIINNL 174
L G K+ + IR ++ L
Sbjct: 894 DL-VGHKISNATRQGNIRRKLLGVL 917
>sp|B4RC79|GLND_PHEZH [Protein-PII] uridylyltransferase OS=Phenylobacterium zucineum
(strain HLK1) GN=glnD PE=3 SV=1
Length = 938
Score = 40.8 bits (94), Expect = 0.012, Method: Composition-based stats.
Identities = 41/159 (25%), Positives = 62/159 (38%), Gaps = 16/159 (10%)
Query: 111 DRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKV--EDPDLLERIRL 168
DR +D A+ G +V V T + + F + +G+ DP L R+
Sbjct: 741 DRPRLFVDLAEAITAAGANVMGARVFTSRAGQALDVFYVQDASGQPFGSHDPRALARLAE 800
Query: 169 TII----NNLLKYHPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIET 224
T+ + P + L AF I P LD E +++
Sbjct: 801 TLACAARGEPVAREPRKPQDLGRTAAFAI-TPAVMLD---------NEASETSTVVEASG 850
Query: 225 ADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHV 263
DRPGLL + + I+D + + SA ID G A D F+V
Sbjct: 851 RDRPGLLAALARTISDAGLSILSAHIDGYGERAVDAFYV 889
Score = 37.4 bits (85), Expect = 0.14, Method: Composition-based stats.
Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
Query: 77 PLKSDQDADYIPMPHVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVN 136
P + A + P V++D +++ +T+V+ S DR G L + D GL + ++
Sbjct: 818 PQDLGRTAAFAITPAVMLDNEASETSTVVEASGRDRPGLLAALARTISDAGLSILSAHID 877
Query: 137 TEGSVKQTKFFITRLDTGRKVED 159
G F++ D GRK+ D
Sbjct: 878 GYGERAVDAFYVVDAD-GRKLTD 899
>sp|Q8RQD1|GLND_AZOBR [Protein-PII] uridylyltransferase OS=Azospirillum brasilense
GN=glnD PE=3 SV=1
Length = 933
Score = 40.8 bits (94), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 49/89 (55%), Gaps = 2/89 (2%)
Query: 86 YIPMPHVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTK 145
++P P VLID ++++ T+++++ DR G L D AL +L L ++ ++T G K
Sbjct: 842 HVP-PRVLIDNNASTTHTVIEVNGRDRPGLLYDLTRALTNLTLQISSAKISTYGE-KAID 899
Query: 146 FFITRLDTGRKVEDPDLLERIRLTIINNL 174
F + G KV + L +IR +++ L
Sbjct: 900 VFYVKDVFGLKVTHENKLAQIRERLLHAL 928
Score = 33.9 bits (76), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 29/46 (63%)
Query: 218 SLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHV 263
+++ + DRPGLL ++ + + ++ + + SA+I T G A D F+V
Sbjct: 858 TVIEVNGRDRPGLLYDLTRALTNLTLQISSAKISTYGEKAIDVFYV 903
>sp|Q98C27|GLND_RHILO [Protein-PII] uridylyltransferase OS=Rhizobium loti (strain
MAFF303099) GN=glnD PE=3 SV=1
Length = 933
Score = 40.8 bits (94), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 31/47 (65%)
Query: 218 SLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVS 264
S++ +E DRPGLL EI ++D+++D+ SA I T G D F+V+
Sbjct: 847 SVIEVEGLDRPGLLSEITGTLSDLSLDIASAHITTFGEKVIDTFYVT 893
Score = 38.5 bits (88), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 46/94 (48%), Gaps = 2/94 (2%)
Query: 87 IPMPHVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKF 146
IP P I ++ +++++ DR G L + L DL LD+A + T G F
Sbjct: 832 IP-PRAEIRNTLSNRFSVIEVEGLDRPGLLSEITGTLSDLSLDIASAHITTFGEKVIDTF 890
Query: 147 FITRLDTGRKVEDPDLLERIRLTIINNLLKYHPE 180
++T L TG+K++ P + IR ++ L PE
Sbjct: 891 YVTDL-TGQKIDSPARIATIRNRLMATLEGIAPE 923
>sp|A5ETJ9|GLND_BRASB [Protein-PII] uridylyltransferase OS=Bradyrhizobium sp. (strain
BTAi1 / ATCC BAA-1182) GN=glnD PE=3 SV=1
Length = 931
Score = 40.4 bits (93), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
Query: 218 SLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVS-YGGAALNSSLSQ 276
+++ + DRPGLL E+ I+ +N+++ SA + T G A+D F+V+ GA +N+ Q
Sbjct: 850 TVIEVSGLDRPGLLYELTTAISKLNLNIASAHVATFGERARDVFYVTDLLGAQINAPTRQ 909
Query: 277 VLVN 280
+
Sbjct: 910 AAIK 913
Score = 35.4 bits (80), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Query: 71 NAVSPTPLKSDQDADYIPMPHVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDV 130
+AV+ + Q + P V I+ + T++++S DR G L + A+ L L++
Sbjct: 818 DAVARRTTRGKQHKAFSVEPEVSINNQWSELYTVIEVSGLDRPGLLYELTTAISKLNLNI 877
Query: 131 AKGTVNTEGSVKQTKFFITRLDTGRKVEDP 160
A V T G + F++T L G ++ P
Sbjct: 878 ASAHVATFGERARDVFYVTDL-LGAQINAP 906
>sp|A4YKP3|GLND_BRASO [Protein-PII] uridylyltransferase OS=Bradyrhizobium sp. (strain
ORS278) GN=glnD PE=3 SV=1
Length = 931
Score = 40.4 bits (93), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
Query: 218 SLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVS-YGGAALNSSLSQ 276
+++ + DRPGLL E+ I+ +N+++ SA + T G A+D F+V+ GA +N+ Q
Sbjct: 850 TVIEVSGLDRPGLLYELTTAISKLNLNIASAHVATFGERARDVFYVTDLLGAQINAPTRQ 909
Query: 277 VLVN 280
+
Sbjct: 910 AAIK 913
Score = 35.8 bits (81), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Query: 71 NAVSPTPLKSDQDADYIPMPHVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDV 130
+AV+ + Q + P V I+ + T++++S DR G L + A+ L L++
Sbjct: 818 DAVARRTTRGKQHKAFSVEPEVSINNQWSELYTVIEVSGLDRPGLLYELTTAISKLNLNI 877
Query: 131 AKGTVNTEGSVKQTKFFITRLDTGRKVEDP 160
A V T G + F++T L G ++ P
Sbjct: 878 ASAHVATFGERARDVFYVTDL-LGAQINAP 906
>sp|B9JZI2|GLND_AGRVS [Protein-PII] uridylyltransferase OS=Agrobacterium vitis (strain S4
/ ATCC BAA-846) GN=glnD PE=3 SV=1
Length = 941
Score = 40.0 bits (92), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 31/48 (64%)
Query: 216 KRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHV 263
K +++ IE DR GLL E+ ++AD+++D+ SA I T G D F+V
Sbjct: 837 KFTVIEIECLDRIGLLAEVTAVLADLSLDIHSARITTFGEKVIDTFYV 884
Score = 37.0 bits (84), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 46/99 (46%), Gaps = 1/99 (1%)
Query: 90 PHVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFIT 149
PHV I ++ T++++ DR+G L + L DL LD+ + T G F++
Sbjct: 826 PHVTISNSLSNKFTVIEIECLDRIGLLAEVTAVLADLSLDIHSARITTFGEKVIDTFYVI 885
Query: 150 RLDTGRKVEDPDLLERIRLTIINNLLKYHPESSEQLAMG 188
L G+K+ + + I + + + + E EQ+ G
Sbjct: 886 DL-VGQKITNENRQGSISVRLKAVMSEQPDELREQMPSG 923
>sp|Q89VX9|GLND_BRAJA [Protein-PII] uridylyltransferase OS=Bradyrhizobium japonicum
(strain USDA 110) GN=glnD PE=3 SV=2
Length = 929
Score = 40.0 bits (92), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 38/62 (61%), Gaps = 1/62 (1%)
Query: 216 KRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVS-YGGAALNSSL 274
+ +++ + DRPGLL E+ I+ +N+++ SA + T G A+D F+V+ GA +N+
Sbjct: 847 RYTVIEVSGLDRPGLLYELTTAISKLNLNIASAHVATFGERARDVFYVTDLLGAQINAPT 906
Query: 275 SQ 276
Q
Sbjct: 907 RQ 908
Score = 35.4 bits (80), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Query: 86 YIPMPHVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTK 145
++ P V I+ + T++++S DR G L + A+ L L++A V T G +
Sbjct: 832 FVIEPEVTINNQWSDRYTVIEVSGLDRPGLLYELTTAISKLNLNIASAHVATFGERARDV 891
Query: 146 FFITRLDTGRKVEDP 160
F++T L G ++ P
Sbjct: 892 FYVTDL-LGAQINAP 905
>sp|Q31G41|GLND_THICR [Protein-PII] uridylyltransferase OS=Thiomicrospira crunogena
(strain XCL-2) GN=glnD PE=3 SV=1
Length = 888
Score = 39.7 bits (91), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 36/69 (52%)
Query: 196 PEKKLDVDIATHIHVKEDGPKRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGL 255
P + ++ THI +E + + L I T D PGLL +I + + V A+I+T G
Sbjct: 794 PRRIRVFEMPTHIQFQEINEELTELSISTKDIPGLLAKIGQAFKSCKIRVHDAKINTVGE 853
Query: 256 VAKDKFHVS 264
A+D F +S
Sbjct: 854 KAEDTFMIS 862
>sp|Q2N784|GLND_ERYLH [Protein-PII] uridylyltransferase OS=Erythrobacter litoralis
(strain HTCC2594) GN=glnD PE=3 SV=1
Length = 919
Score = 38.9 bits (89), Expect = 0.048, Method: Composition-based stats.
Identities = 31/123 (25%), Positives = 54/123 (43%), Gaps = 7/123 (5%)
Query: 50 EQGICLSRKNRNILFASVNGTNAVSPTPLKSDQDADYIPMPHVLIDQDSNSDATIVQLSF 109
EQ I + NR L + + PLK + + P VL D D++ T+++++
Sbjct: 791 EQAIADAIANRGELVPKL------AKRPLKQTRAGAFDVRPRVLFDNDASGRFTVIEVNA 844
Query: 110 GDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLT 169
DR L AL + + V + G F++T L TG K+ D ++ IR
Sbjct: 845 RDRAALLNRLGRALFENQVIVQSAHITAYGERAADTFYVTDL-TGAKITDESRMDTIRQA 903
Query: 170 IIN 172
+++
Sbjct: 904 LLD 906
>sp|Q2SX00|GLND_BURTA [Protein-PII] uridylyltransferase OS=Burkholderia thailandensis
(strain E264 / ATCC 700388 / DSM 13276 / CIP 106301)
GN=glnD PE=3 SV=1
Length = 858
Score = 38.9 bits (89), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 34/65 (52%)
Query: 219 LLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGGAALNSSLSQVL 278
+L + DRPGLL I +++A+ V V +A I+T G +D F + G + N QV
Sbjct: 790 ILSVSANDRPGLLYSIARVLAEHRVGVHAARINTLGERVEDVFMLDGTGLSDNRLQIQVE 849
Query: 279 VNCLR 283
LR
Sbjct: 850 TELLR 854
>sp|Q63T10|GLND_BURPS [Protein-PII] uridylyltransferase OS=Burkholderia pseudomallei
(strain K96243) GN=glnD PE=3 SV=1
Length = 858
Score = 38.5 bits (88), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 34/65 (52%)
Query: 219 LLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGGAALNSSLSQVL 278
+L + DRPGLL I +++A+ V V +A I+T G +D F + G + N QV
Sbjct: 790 ILSVSANDRPGLLYSIARVLAEHRVGVHAARINTLGERVEDVFMLDGTGLSDNRLQIQVE 849
Query: 279 VNCLR 283
LR
Sbjct: 850 TELLR 854
>sp|A3NAV0|GLND_BURP6 [Protein-PII] uridylyltransferase OS=Burkholderia pseudomallei
(strain 668) GN=glnD PE=3 SV=1
Length = 858
Score = 38.5 bits (88), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 34/65 (52%)
Query: 219 LLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGGAALNSSLSQVL 278
+L + DRPGLL I +++A+ V V +A I+T G +D F + G + N QV
Sbjct: 790 ILSVSANDRPGLLYSIARVLAEHRVGVHAARINTLGERVEDVFMLDGTGLSDNRLQIQVE 849
Query: 279 VNCLR 283
LR
Sbjct: 850 TELLR 854
>sp|Q3JR26|GLND_BURP1 [Protein-PII] uridylyltransferase OS=Burkholderia pseudomallei
(strain 1710b) GN=glnD PE=3 SV=1
Length = 858
Score = 38.5 bits (88), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 34/65 (52%)
Query: 219 LLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGGAALNSSLSQVL 278
+L + DRPGLL I +++A+ V V +A I+T G +D F + G + N QV
Sbjct: 790 ILSVSANDRPGLLYSIARVLAEHRVGVHAARINTLGERVEDVFMLDGTGLSDNRLQIQVE 849
Query: 279 VNCLR 283
LR
Sbjct: 850 TELLR 854
>sp|A3NWN4|GLND_BURP0 [Protein-PII] uridylyltransferase OS=Burkholderia pseudomallei
(strain 1106a) GN=glnD PE=3 SV=1
Length = 858
Score = 38.5 bits (88), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 34/65 (52%)
Query: 219 LLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGGAALNSSLSQVL 278
+L + DRPGLL I +++A+ V V +A I+T G +D F + G + N QV
Sbjct: 790 ILSVSANDRPGLLYSIARVLAEHRVGVHAARINTLGERVEDVFMLDGTGLSDNRLQIQVE 849
Query: 279 VNCLR 283
LR
Sbjct: 850 TELLR 854
>sp|A1V572|GLND_BURMS [Protein-PII] uridylyltransferase OS=Burkholderia mallei (strain
SAVP1) GN=glnD PE=3 SV=1
Length = 858
Score = 38.5 bits (88), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 34/65 (52%)
Query: 219 LLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGGAALNSSLSQVL 278
+L + DRPGLL I +++A+ V V +A I+T G +D F + G + N QV
Sbjct: 790 ILSVSANDRPGLLYSIARVLAEHRVGVHAARINTLGERVEDVFMLDGTGLSDNRLQIQVE 849
Query: 279 VNCLR 283
LR
Sbjct: 850 TELLR 854
>sp|Q62JC2|GLND_BURMA [Protein-PII] uridylyltransferase OS=Burkholderia mallei (strain
ATCC 23344) GN=glnD PE=3 SV=1
Length = 858
Score = 38.5 bits (88), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 34/65 (52%)
Query: 219 LLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGGAALNSSLSQVL 278
+L + DRPGLL I +++A+ V V +A I+T G +D F + G + N QV
Sbjct: 790 ILSVSANDRPGLLYSIARVLAEHRVGVHAARINTLGERVEDVFMLDGTGLSDNRLQIQVE 849
Query: 279 VNCLR 283
LR
Sbjct: 850 TELLR 854
>sp|A2SB69|GLND_BURM9 [Protein-PII] uridylyltransferase OS=Burkholderia mallei (strain
NCTC 10229) GN=glnD PE=3 SV=1
Length = 858
Score = 38.5 bits (88), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 34/65 (52%)
Query: 219 LLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGGAALNSSLSQVL 278
+L + DRPGLL I +++A+ V V +A I+T G +D F + G + N QV
Sbjct: 790 ILSVSANDRPGLLYSIARVLAEHRVGVHAARINTLGERVEDVFMLDGTGLSDNRLQIQVE 849
Query: 279 VNCLR 283
LR
Sbjct: 850 TELLR 854
>sp|A3MKU6|GLND_BURM7 [Protein-PII] uridylyltransferase OS=Burkholderia mallei (strain
NCTC 10247) GN=glnD PE=3 SV=1
Length = 858
Score = 38.5 bits (88), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 34/65 (52%)
Query: 219 LLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGGAALNSSLSQVL 278
+L + DRPGLL I +++A+ V V +A I+T G +D F + G + N QV
Sbjct: 790 ILSVSANDRPGLLYSIARVLAEHRVGVHAARINTLGERVEDVFMLDGTGLSDNRLQIQVE 849
Query: 279 VNCLR 283
LR
Sbjct: 850 TELLR 854
>sp|B7LWA6|GLND_ESCF3 [Protein-PII] uridylyltransferase OS=Escherichia fergusonii (strain
ATCC 35469 / DSM 13698 / CDC 0568-73) GN=glnD PE=3 SV=1
Length = 890
Score = 38.5 bits (88), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Query: 216 KRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGG-AALNSSL 274
++S L + D+PGLL + KI AD+ + + A I T G +D F ++ ALN+ L
Sbjct: 813 RKSFLELIALDQPGLLARVGKIFADLGISLHGARITTIGERVEDLFIIATADRRALNNEL 872
Query: 275 SQ 276
Q
Sbjct: 873 QQ 874
>sp|Q87MD6|GLND_VIBPA [Protein-PII] uridylyltransferase OS=Vibrio parahaemolyticus
serotype O3:K6 (strain RIMD 2210633) GN=glnD PE=3 SV=1
Length = 874
Score = 38.5 bits (88), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
Query: 194 KAPEKKLDVDIATHI-HVKEDGPKRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDT 252
+ P K ++ T + + G K +L+ D PGLL ++ + AD+N+++ A+I T
Sbjct: 774 RTPNKLQHFNVKTKVDFLPTKGKKHTLMEFVALDTPGLLAKVGRTFADLNINLHGAKITT 833
Query: 253 EGLVAKDKF 261
G A+D F
Sbjct: 834 IGERAEDLF 842
>sp|B7N834|GLND_ECOLU [Protein-PII] uridylyltransferase OS=Escherichia coli O17:K52:H18
(strain UMN026 / ExPEC) GN=glnD PE=3 SV=1
Length = 890
Score = 38.5 bits (88), Expect = 0.061, Method: Composition-based stats.
Identities = 22/62 (35%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Query: 216 KRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGG-AALNSSL 274
++S L + D+PGLL + KI AD+ + + A I T G +D F ++ ALN+ L
Sbjct: 813 RKSFLELIALDQPGLLARVGKIFADLGISLHGARITTIGERVEDLFIIATADRRALNNEL 872
Query: 275 SQ 276
Q
Sbjct: 873 QQ 874
>sp|Q8CY19|GLND_ECOL6 [Protein-PII] uridylyltransferase OS=Escherichia coli O6:H1 (strain
CFT073 / ATCC 700928 / UPEC) GN=glnD PE=3 SV=1
Length = 890
Score = 38.5 bits (88), Expect = 0.061, Method: Composition-based stats.
Identities = 22/62 (35%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Query: 216 KRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGG-AALNSSL 274
++S L + D+PGLL + KI AD+ + + A I T G +D F ++ ALN+ L
Sbjct: 813 RKSFLELIALDQPGLLARVGKIFADLGISLHGARITTIGERVEDLFIIATADRRALNNEL 872
Query: 275 SQ 276
Q
Sbjct: 873 QQ 874
>sp|B7MP27|GLND_ECO81 [Protein-PII] uridylyltransferase OS=Escherichia coli O81 (strain
ED1a) GN=glnD PE=3 SV=1
Length = 890
Score = 38.5 bits (88), Expect = 0.061, Method: Composition-based stats.
Identities = 22/62 (35%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Query: 216 KRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGG-AALNSSL 274
++S L + D+PGLL + KI AD+ + + A I T G +D F ++ ALN+ L
Sbjct: 813 RKSFLELIALDQPGLLARVGKIFADLGISLHGARITTIGERVEDLFIIATADRRALNNEL 872
Query: 275 SQ 276
Q
Sbjct: 873 QQ 874
>sp|B5Z0E5|GLND_ECO5E [Protein-PII] uridylyltransferase OS=Escherichia coli O157:H7
(strain EC4115 / EHEC) GN=glnD PE=3 SV=1
Length = 890
Score = 38.5 bits (88), Expect = 0.061, Method: Composition-based stats.
Identities = 22/62 (35%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Query: 216 KRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGG-AALNSSL 274
++S L + D+PGLL + KI AD+ + + A I T G +D F ++ ALN+ L
Sbjct: 813 RKSFLELIALDQPGLLARVGKIFADLGISLHGARITTIGERVEDLFIIATADRRALNNEL 872
Query: 275 SQ 276
Q
Sbjct: 873 QQ 874
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.134 0.376
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 105,272,279
Number of Sequences: 539616
Number of extensions: 4415739
Number of successful extensions: 11757
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 31
Number of HSP's that attempted gapping in prelim test: 11513
Number of HSP's gapped (non-prelim): 258
length of query: 296
length of database: 191,569,459
effective HSP length: 117
effective length of query: 179
effective length of database: 128,434,387
effective search space: 22989755273
effective search space used: 22989755273
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)