Query 022480
Match_columns 296
No_of_seqs 135 out of 1382
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 03:51:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022480.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022480hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK05007 PII uridylyl-transfer 100.0 2.1E-32 4.6E-37 288.5 26.2 191 88-288 687-880 (884)
2 PRK01759 glnD PII uridylyl-tra 100.0 3E-32 6.5E-37 286.4 26.2 189 88-287 663-854 (854)
3 PRK00275 glnD PII uridylyl-tra 100.0 2.2E-29 4.7E-34 265.8 26.6 199 88-294 687-893 (895)
4 TIGR01693 UTase_glnD [Protein- 100.0 2.1E-29 4.5E-34 265.3 26.3 193 88-286 654-849 (850)
5 PRK05092 PII uridylyl-transfer 100.0 3.4E-28 7.5E-33 258.1 27.0 199 88-293 718-921 (931)
6 PRK04374 PII uridylyl-transfer 100.0 3.6E-28 7.8E-33 255.5 26.3 188 89-287 676-867 (869)
7 COG2844 GlnD UTP:GlnB (protein 100.0 2.6E-28 5.7E-33 248.1 22.0 192 87-288 669-863 (867)
8 PRK03059 PII uridylyl-transfer 100.0 3.3E-27 7.1E-32 248.4 25.6 189 88-287 664-855 (856)
9 PRK03381 PII uridylyl-transfer 100.0 4.9E-27 1.1E-31 244.9 24.9 186 88-283 586-773 (774)
10 cd04897 ACT_ACR_3 ACT domain-c 99.9 8.9E-22 1.9E-26 148.9 10.6 72 217-288 1-74 (75)
11 cd04896 ACT_ACR-like_3 ACT dom 99.8 1.9E-20 4.1E-25 141.6 10.1 72 218-289 1-75 (75)
12 cd04895 ACT_ACR_1 ACT domain-c 99.8 2.2E-20 4.7E-25 140.3 9.8 68 217-284 1-70 (72)
13 cd04897 ACT_ACR_3 ACT domain-c 99.7 2.3E-16 4.9E-21 119.4 11.1 73 102-175 1-73 (75)
14 cd04895 ACT_ACR_1 ACT domain-c 99.7 4E-16 8.7E-21 117.2 10.7 69 102-171 1-69 (72)
15 PRK11589 gcvR glycine cleavage 99.7 9.7E-16 2.1E-20 135.4 14.1 138 99-264 5-144 (190)
16 PRK00275 glnD PII uridylyl-tra 99.7 1.4E-15 3.1E-20 161.3 15.4 151 20-176 727-887 (895)
17 cd04925 ACT_ACR_2 ACT domain-c 99.6 4.1E-15 8.9E-20 112.0 11.1 72 103-175 1-73 (74)
18 PRK01759 glnD PII uridylyl-tra 99.6 3.3E-15 7.1E-20 157.9 14.0 148 19-174 699-853 (854)
19 PRK05007 PII uridylyl-transfer 99.6 4.6E-15 1E-19 157.3 14.5 136 33-176 740-880 (884)
20 cd04900 ACT_UUR-like_1 ACT dom 99.6 5.5E-15 1.2E-19 110.7 10.7 71 103-174 2-73 (73)
21 cd04925 ACT_ACR_2 ACT domain-c 99.6 6.4E-15 1.4E-19 110.9 10.3 70 218-287 1-73 (74)
22 cd04896 ACT_ACR-like_3 ACT dom 99.6 9E-15 2E-19 110.7 10.5 71 103-175 1-73 (75)
23 cd04927 ACT_ACR-like_2 Second 99.6 1.3E-14 2.8E-19 110.0 10.9 72 219-290 2-75 (76)
24 PRK04374 PII uridylyl-transfer 99.6 2.6E-14 5.7E-19 151.1 15.4 147 19-175 712-867 (869)
25 cd04900 ACT_UUR-like_1 ACT dom 99.6 2.8E-14 6.1E-19 106.9 10.6 69 218-286 2-73 (73)
26 cd04927 ACT_ACR-like_2 Second 99.5 6.8E-14 1.5E-18 106.0 11.2 71 104-176 2-73 (76)
27 PRK03059 PII uridylyl-transfer 99.5 4E-14 8.7E-19 149.7 13.4 156 8-175 691-855 (856)
28 PRK05092 PII uridylyl-transfer 99.5 1E-13 2.3E-18 147.9 16.1 138 33-176 771-916 (931)
29 TIGR01693 UTase_glnD [Protein- 99.5 1.6E-13 3.4E-18 145.4 13.3 136 32-174 706-849 (850)
30 COG2844 GlnD UTP:GlnB (protein 99.5 2.6E-13 5.7E-18 139.2 12.5 149 15-174 707-861 (867)
31 COG2716 GcvR Glycine cleavage 99.5 3.1E-13 6.7E-18 116.1 9.3 158 100-286 3-163 (176)
32 PRK03381 PII uridylyl-transfer 99.4 8.6E-13 1.9E-17 138.4 13.9 127 32-170 636-772 (774)
33 PRK00227 glnD PII uridylyl-tra 99.4 6E-12 1.3E-16 130.0 16.2 177 61-287 514-691 (693)
34 cd04928 ACT_TyrKc Uncharacteri 99.4 6.1E-12 1.3E-16 93.5 9.7 52 103-155 2-54 (68)
35 cd04926 ACT_ACR_4 C-terminal 99.3 1.5E-11 3.3E-16 92.0 10.4 67 103-171 2-68 (72)
36 cd04899 ACT_ACR-UUR-like_2 C-t 99.3 1.7E-11 3.8E-16 89.9 10.3 69 218-286 1-70 (70)
37 cd04926 ACT_ACR_4 C-terminal 99.3 3.4E-11 7.3E-16 90.1 10.2 65 218-282 2-67 (72)
38 cd04899 ACT_ACR-UUR-like_2 C-t 99.3 6.3E-11 1.4E-15 86.9 10.5 69 103-173 1-69 (70)
39 cd04873 ACT_UUR-ACR-like ACT d 99.0 2.6E-09 5.6E-14 77.7 10.3 69 218-286 1-70 (70)
40 cd04873 ACT_UUR-ACR-like ACT d 99.0 6.7E-09 1.4E-13 75.5 10.4 68 104-173 2-69 (70)
41 cd04928 ACT_TyrKc Uncharacteri 99.0 5.8E-09 1.3E-13 77.6 9.8 64 218-286 2-67 (68)
42 PF13740 ACT_6: ACT domain; PD 98.7 1.5E-07 3.2E-12 71.1 10.4 64 102-173 2-65 (76)
43 PF01842 ACT: ACT domain; Int 98.6 4.5E-07 9.8E-12 65.0 10.1 62 218-285 1-64 (66)
44 PF13740 ACT_6: ACT domain; PD 98.5 9.8E-07 2.1E-11 66.5 9.7 66 217-287 2-67 (76)
45 PF01842 ACT: ACT domain; Int 98.5 1.9E-06 4E-11 61.8 10.2 61 103-172 1-63 (66)
46 cd04893 ACT_GcvR_1 ACT domains 98.5 1E-06 2.3E-11 66.6 9.2 62 103-172 2-63 (77)
47 cd04870 ACT_PSP_1 CT domains f 98.4 9E-07 1.9E-11 66.4 7.4 63 219-286 1-64 (75)
48 cd04870 ACT_PSP_1 CT domains f 98.4 1.6E-06 3.5E-11 65.0 8.0 63 104-173 1-63 (75)
49 cd04894 ACT_ACR-like_1 ACT dom 98.2 5.6E-06 1.2E-10 60.1 6.4 67 103-173 1-67 (69)
50 COG4747 ACT domain-containing 98.2 0.00014 3E-09 59.5 15.0 112 103-263 4-116 (142)
51 cd04893 ACT_GcvR_1 ACT domains 98.1 2.1E-05 4.5E-10 59.4 9.3 39 218-256 2-40 (77)
52 cd04872 ACT_1ZPV ACT domain pr 98.1 1.4E-05 3E-10 61.7 7.3 66 218-286 2-67 (88)
53 cd04872 ACT_1ZPV ACT domain pr 98.1 1.4E-05 3.1E-10 61.6 7.3 64 103-172 2-65 (88)
54 cd04875 ACT_F4HF-DF N-terminal 98.0 9.5E-06 2.1E-10 60.4 5.5 63 219-286 1-67 (74)
55 cd04869 ACT_GcvR_2 ACT domains 98.0 3.3E-05 7.1E-10 58.1 8.5 66 219-286 1-70 (81)
56 cd04869 ACT_GcvR_2 ACT domains 98.0 4.1E-05 8.9E-10 57.5 8.9 62 104-172 1-68 (81)
57 cd04875 ACT_F4HF-DF N-terminal 98.0 2E-05 4.4E-10 58.6 6.5 35 104-138 1-35 (74)
58 PRK00194 hypothetical protein; 98.0 4.6E-05 1E-09 58.8 8.6 41 217-257 3-43 (90)
59 PF13291 ACT_4: ACT domain; PD 98.0 3.2E-05 7E-10 58.3 7.3 63 217-283 6-70 (80)
60 PRK00194 hypothetical protein; 98.0 3.5E-05 7.6E-10 59.4 7.6 65 102-172 3-67 (90)
61 cd04887 ACT_MalLac-Enz ACT_Mal 97.7 0.00028 6E-09 52.0 8.5 61 220-284 2-63 (74)
62 PRK11589 gcvR glycine cleavage 97.7 0.00011 2.4E-09 65.2 6.5 49 216-264 7-55 (190)
63 PF13291 ACT_4: ACT domain; PD 97.6 0.00044 9.5E-09 52.0 8.2 62 103-171 7-70 (80)
64 PRK06027 purU formyltetrahydro 97.6 0.00047 1E-08 64.8 9.8 67 101-173 5-73 (286)
65 PRK06027 purU formyltetrahydro 97.5 0.0005 1.1E-08 64.7 9.4 63 217-286 6-74 (286)
66 cd04887 ACT_MalLac-Enz ACT_Mal 97.5 0.0013 2.9E-08 48.2 9.7 61 105-172 2-63 (74)
67 cd04877 ACT_TyrR N-terminal AC 97.5 0.00068 1.5E-08 50.4 8.0 35 219-253 2-36 (74)
68 COG3830 ACT domain-containing 97.5 0.00015 3.3E-09 56.5 4.3 35 217-251 3-37 (90)
69 PRK13010 purU formyltetrahydro 97.5 0.00039 8.5E-09 65.5 7.9 42 101-142 8-51 (289)
70 PRK13011 formyltetrahydrofolat 97.4 0.00035 7.6E-09 65.7 7.2 46 217-264 7-52 (286)
71 cd04908 ACT_Bt0572_1 N-termina 97.4 0.0014 3E-08 47.6 8.9 46 218-265 2-47 (66)
72 cd04905 ACT_CM-PDT C-terminal 97.4 0.002 4.4E-08 48.5 10.0 66 218-284 2-68 (80)
73 cd04886 ACT_ThrD-II-like C-ter 97.4 0.0013 2.9E-08 47.1 8.0 34 220-253 1-34 (73)
74 TIGR00655 PurU formyltetrahydr 97.3 0.0013 2.9E-08 61.6 9.8 63 104-172 2-66 (280)
75 cd04881 ACT_HSDH-Hom ACT_HSDH_ 97.3 0.0013 2.8E-08 47.9 7.7 62 219-284 2-65 (79)
76 cd04909 ACT_PDH-BS C-terminal 97.3 0.0021 4.5E-08 46.7 8.7 61 218-284 2-64 (69)
77 cd04889 ACT_PDH-BS-like C-term 97.3 0.00092 2E-08 46.8 6.2 46 220-265 1-47 (56)
78 cd04894 ACT_ACR-like_1 ACT dom 97.3 0.001 2.3E-08 48.4 6.4 68 218-286 1-68 (69)
79 TIGR00655 PurU formyltetrahydr 97.3 0.0015 3.1E-08 61.4 9.0 44 219-264 2-45 (280)
80 PRK13011 formyltetrahydrofolat 97.2 0.0019 4E-08 60.8 9.5 65 102-173 7-73 (286)
81 cd04888 ACT_PheB-BS C-terminal 97.2 0.0032 6.9E-08 46.3 8.9 63 219-284 2-65 (76)
82 cd04879 ACT_3PGDH-like ACT_3PG 97.2 0.0026 5.7E-08 45.2 8.1 44 220-263 2-47 (71)
83 cd04878 ACT_AHAS N-terminal AC 97.2 0.0038 8.2E-08 44.5 9.0 61 219-284 2-64 (72)
84 COG3830 ACT domain-containing 97.2 0.00049 1.1E-08 53.7 4.2 49 102-150 3-51 (90)
85 cd04886 ACT_ThrD-II-like C-ter 97.2 0.0045 9.8E-08 44.2 9.1 34 105-138 1-34 (73)
86 CHL00100 ilvH acetohydroxyacid 97.1 0.0027 5.8E-08 55.7 8.9 35 218-252 3-37 (174)
87 cd04882 ACT_Bt0572_2 C-termina 97.1 0.0025 5.4E-08 45.3 7.2 49 219-267 1-49 (65)
88 PRK13010 purU formyltetrahydro 97.1 0.0024 5.1E-08 60.2 8.9 46 217-264 9-54 (289)
89 TIGR00119 acolac_sm acetolacta 97.1 0.0035 7.5E-08 54.0 9.1 67 218-287 2-68 (157)
90 PRK06737 acetolactate synthase 97.1 0.004 8.6E-08 47.3 8.2 65 218-286 3-68 (76)
91 PRK13562 acetolactate synthase 97.0 0.0039 8.4E-08 48.2 7.8 65 103-172 3-67 (84)
92 PRK08178 acetolactate synthase 97.0 0.0056 1.2E-07 48.5 8.6 66 216-286 7-73 (96)
93 PRK06737 acetolactate synthase 97.0 0.0053 1.1E-07 46.6 8.2 64 103-172 3-66 (76)
94 PRK08178 acetolactate synthase 97.0 0.0054 1.2E-07 48.6 8.4 66 100-172 6-71 (96)
95 cd04903 ACT_LSD C-terminal ACT 97.0 0.0067 1.5E-07 43.2 8.3 33 220-252 2-34 (71)
96 cd04902 ACT_3PGDH-xct C-termin 96.9 0.0047 1E-07 44.9 7.4 44 220-263 2-47 (73)
97 cd04877 ACT_TyrR N-terminal AC 96.9 0.0055 1.2E-07 45.5 7.6 35 104-138 2-36 (74)
98 cd04931 ACT_PAH ACT domain of 96.9 0.013 2.9E-07 45.8 10.1 70 216-287 13-83 (90)
99 PRK11895 ilvH acetolactate syn 96.9 0.0068 1.5E-07 52.5 9.1 67 218-287 3-69 (161)
100 COG0788 PurU Formyltetrahydrof 96.9 0.0026 5.6E-08 59.0 6.8 39 101-139 6-44 (287)
101 cd04881 ACT_HSDH-Hom ACT_HSDH_ 96.9 0.01 2.2E-07 43.1 8.6 63 104-172 2-65 (79)
102 cd04908 ACT_Bt0572_1 N-termina 96.8 0.01 2.3E-07 42.9 8.4 39 103-141 2-40 (66)
103 PRK13562 acetolactate synthase 96.8 0.0086 1.9E-07 46.3 7.9 66 218-286 3-69 (84)
104 cd04878 ACT_AHAS N-terminal AC 96.8 0.018 3.8E-07 41.0 9.2 40 104-143 2-42 (72)
105 cd04888 ACT_PheB-BS C-terminal 96.8 0.014 3E-07 42.8 8.8 62 104-172 2-65 (76)
106 cd04889 ACT_PDH-BS-like C-term 96.8 0.0061 1.3E-07 42.5 6.5 45 105-149 1-46 (56)
107 cd04874 ACT_Af1403 N-terminal 96.7 0.014 3E-07 41.7 8.5 35 219-253 2-36 (72)
108 TIGR00119 acolac_sm acetolacta 96.7 0.014 3.1E-07 50.2 9.8 63 103-173 2-66 (157)
109 cd04909 ACT_PDH-BS C-terminal 96.7 0.016 3.4E-07 42.0 8.7 37 103-139 2-38 (69)
110 PRK11152 ilvM acetolactate syn 96.7 0.012 2.6E-07 44.7 8.2 63 218-286 4-68 (76)
111 PRK11895 ilvH acetolactate syn 96.7 0.016 3.5E-07 50.2 9.9 63 103-173 3-67 (161)
112 cd04901 ACT_3PGDH C-terminal A 96.7 0.0021 4.6E-08 46.3 3.9 44 220-263 2-45 (69)
113 cd02116 ACT ACT domains are co 96.7 0.011 2.4E-07 38.6 7.1 35 220-254 1-35 (60)
114 PRK08577 hypothetical protein; 96.7 0.02 4.2E-07 47.8 10.1 49 215-263 54-104 (136)
115 COG0788 PurU Formyltetrahydrof 96.6 0.0083 1.8E-07 55.6 8.1 56 216-273 6-65 (287)
116 cd04880 ACT_AAAH-PDT-like ACT 96.6 0.025 5.4E-07 41.8 9.3 64 221-285 3-67 (75)
117 cd04883 ACT_AcuB C-terminal AC 96.6 0.017 3.6E-07 42.0 8.1 34 218-251 2-35 (72)
118 CHL00100 ilvH acetohydroxyacid 96.6 0.013 2.9E-07 51.3 8.7 66 103-174 3-68 (174)
119 cd04884 ACT_CBS C-terminal ACT 96.5 0.017 3.7E-07 42.4 7.7 34 105-138 2-35 (72)
120 cd04876 ACT_RelA-SpoT ACT dom 96.5 0.019 4.2E-07 39.5 7.7 35 220-254 1-35 (71)
121 cd04874 ACT_Af1403 N-terminal 96.5 0.026 5.7E-07 40.2 8.5 39 104-142 2-40 (72)
122 PRK11152 ilvM acetolactate syn 96.5 0.02 4.4E-07 43.4 8.0 61 103-172 4-66 (76)
123 PRK08577 hypothetical protein; 96.4 0.071 1.5E-06 44.4 11.7 49 91-139 43-93 (136)
124 cd04884 ACT_CBS C-terminal ACT 96.3 0.02 4.2E-07 42.1 7.2 34 220-253 2-35 (72)
125 cd04876 ACT_RelA-SpoT ACT dom 96.3 0.043 9.4E-07 37.6 8.5 38 105-142 1-38 (71)
126 cd04904 ACT_AAAH ACT domain of 96.3 0.031 6.8E-07 41.7 8.1 62 220-284 3-65 (74)
127 PF13710 ACT_5: ACT domain; PD 96.2 0.021 4.5E-07 41.6 6.7 58 226-286 1-58 (63)
128 cd04879 ACT_3PGDH-like ACT_3PG 96.2 0.02 4.4E-07 40.5 6.6 44 105-148 2-47 (71)
129 PRK07334 threonine dehydratase 96.2 0.024 5.1E-07 55.6 9.0 64 217-284 326-394 (403)
130 cd04903 ACT_LSD C-terminal ACT 96.1 0.055 1.2E-06 38.3 8.5 34 105-138 2-35 (71)
131 cd04905 ACT_CM-PDT C-terminal 96.1 0.09 1.9E-06 39.4 9.8 48 103-150 2-50 (80)
132 cd02116 ACT ACT domains are co 96.0 0.082 1.8E-06 34.2 8.3 35 105-139 1-35 (60)
133 PRK04435 hypothetical protein; 96.0 0.088 1.9E-06 44.7 10.3 78 89-172 56-134 (147)
134 cd04902 ACT_3PGDH-xct C-termin 95.9 0.045 9.7E-07 39.6 7.2 34 105-138 2-35 (73)
135 PRK04435 hypothetical protein; 95.7 0.076 1.6E-06 45.1 8.9 66 215-283 67-133 (147)
136 PRK00227 glnD PII uridylyl-tra 95.6 0.048 1E-06 57.3 8.8 69 217-286 546-617 (693)
137 cd04885 ACT_ThrD-I Tandem C-te 95.6 0.08 1.7E-06 38.6 7.5 61 105-172 1-61 (68)
138 cd04882 ACT_Bt0572_2 C-termina 95.6 0.036 7.8E-07 39.1 5.5 35 105-139 2-36 (65)
139 cd04929 ACT_TPH ACT domain of 95.5 0.089 1.9E-06 39.5 7.6 62 220-284 3-65 (74)
140 PRK07334 threonine dehydratase 95.5 0.11 2.3E-06 51.1 10.1 63 103-172 327-394 (403)
141 PRK06635 aspartate kinase; Rev 95.5 0.28 6.1E-06 47.9 13.0 108 103-249 263-375 (404)
142 TIGR00656 asp_kin_monofn aspar 95.4 0.91 2E-05 44.3 16.3 107 101-248 259-371 (401)
143 PRK11899 prephenate dehydratas 95.2 0.11 2.3E-06 48.9 8.9 53 217-269 194-247 (279)
144 PF13710 ACT_5: ACT domain; PD 95.2 0.069 1.5E-06 38.8 6.0 56 111-172 1-56 (63)
145 cd04898 ACT_ACR-like_4 ACT dom 95.2 0.035 7.5E-07 42.0 4.3 67 220-286 3-74 (77)
146 cd04883 ACT_AcuB C-terminal AC 95.1 0.11 2.3E-06 37.6 6.9 36 103-138 2-37 (72)
147 PRK10872 relA (p)ppGpp synthet 95.0 0.1 2.2E-06 55.3 8.8 63 217-283 666-730 (743)
148 cd04901 ACT_3PGDH C-terminal A 95.0 0.021 4.5E-07 41.1 2.6 36 105-140 2-37 (69)
149 PRK06291 aspartate kinase; Pro 94.9 2.8 6E-05 42.1 18.4 110 100-250 319-434 (465)
150 COG2716 GcvR Glycine cleavage 94.6 0.021 4.5E-07 49.7 2.2 50 216-265 4-53 (176)
151 PRK11092 bifunctional (p)ppGpp 94.4 0.17 3.6E-06 53.4 8.7 63 217-283 626-689 (702)
152 TIGR00719 sda_beta L-serine de 94.3 0.21 4.5E-06 44.8 8.0 55 216-273 147-203 (208)
153 PRK10872 relA (p)ppGpp synthet 94.2 0.34 7.3E-06 51.4 10.4 63 103-172 667-731 (743)
154 cd04880 ACT_AAAH-PDT-like ACT 94.2 0.68 1.5E-05 34.0 9.4 64 105-172 2-66 (75)
155 cd04930 ACT_TH ACT domain of t 94.2 0.25 5.4E-06 40.3 7.5 53 217-269 41-94 (115)
156 TIGR00691 spoT_relA (p)ppGpp s 94.2 0.21 4.5E-06 52.6 8.7 63 217-283 610-673 (683)
157 PRK11790 D-3-phosphoglycerate 94.1 0.11 2.4E-06 51.2 6.4 60 216-278 337-396 (409)
158 PRK11092 bifunctional (p)ppGpp 94.0 0.37 8E-06 50.9 10.3 64 102-172 626-690 (702)
159 COG0317 SpoT Guanosine polypho 93.9 0.38 8.2E-06 50.6 9.8 74 92-172 616-691 (701)
160 COG0077 PheA Prephenate dehydr 93.7 0.33 7.1E-06 45.6 8.3 56 216-271 193-249 (279)
161 TIGR00691 spoT_relA (p)ppGpp s 93.6 0.53 1.1E-05 49.6 10.6 64 102-172 610-674 (683)
162 cd04885 ACT_ThrD-I Tandem C-te 93.4 0.46 1E-05 34.5 7.0 59 221-284 2-61 (68)
163 cd04906 ACT_ThrD-I_1 First of 93.1 0.89 1.9E-05 34.6 8.5 61 104-172 3-64 (85)
164 PRK08210 aspartate kinase I; R 92.9 5.5 0.00012 39.0 16.0 99 101-247 270-372 (403)
165 COG0317 SpoT Guanosine polypho 92.8 0.54 1.2E-05 49.4 9.0 43 217-259 627-669 (701)
166 cd04931 ACT_PAH ACT domain of 92.7 2 4.3E-05 33.5 10.1 70 100-174 12-82 (90)
167 cd04871 ACT_PSP_2 ACT domains 92.7 0.076 1.6E-06 40.8 2.0 32 104-135 1-33 (84)
168 PRK08818 prephenate dehydrogen 92.5 0.29 6.3E-06 47.8 6.3 51 216-267 294-345 (370)
169 PRK10622 pheA bifunctional cho 92.4 0.9 1.9E-05 44.6 9.6 54 216-269 296-350 (386)
170 cd04871 ACT_PSP_2 ACT domains 92.3 0.091 2E-06 40.3 2.1 64 219-287 1-74 (84)
171 TIGR00657 asp_kinases aspartat 92.2 5 0.00011 39.8 14.7 108 101-249 301-413 (441)
172 COG1707 ACT domain-containing 92.2 0.57 1.2E-05 41.0 6.9 61 219-283 4-64 (218)
173 PRK09436 thrA bifunctional asp 92.1 9.8 0.00021 41.0 17.7 113 100-249 313-431 (819)
174 PLN02551 aspartokinase 92.1 12 0.00027 38.2 17.6 114 100-252 364-482 (521)
175 COG1707 ACT domain-containing 92.0 0.54 1.2E-05 41.1 6.6 47 104-150 4-50 (218)
176 PRK07431 aspartate kinase; Pro 92.0 17 0.00036 37.5 18.8 136 101-287 438-581 (587)
177 PF13840 ACT_7: ACT domain ; P 91.8 0.53 1.1E-05 34.2 5.6 36 99-134 3-42 (65)
178 TIGR00719 sda_beta L-serine de 91.7 1.2 2.6E-05 39.9 8.8 41 100-140 146-186 (208)
179 PRK06545 prephenate dehydrogen 91.5 0.4 8.7E-06 46.3 6.0 50 215-264 288-337 (359)
180 PRK09034 aspartate kinase; Rev 91.3 13 0.00029 37.1 16.7 111 101-252 307-423 (454)
181 PRK06382 threonine dehydratase 91.3 0.56 1.2E-05 46.1 6.8 65 216-284 329-398 (406)
182 PF13840 ACT_7: ACT domain ; P 91.2 0.35 7.6E-06 35.1 4.0 43 217-264 6-52 (65)
183 cd04906 ACT_ThrD-I_1 First of 91.2 2 4.3E-05 32.7 8.4 61 219-284 3-64 (85)
184 PRK08198 threonine dehydratase 90.7 2.5 5.4E-05 41.4 10.7 66 101-172 326-395 (404)
185 PRK06349 homoserine dehydrogen 90.6 1.2 2.7E-05 44.1 8.5 50 216-265 347-396 (426)
186 PRK09181 aspartate kinase; Val 90.5 6.1 0.00013 39.9 13.5 105 101-250 328-437 (475)
187 PRK07431 aspartate kinase; Pro 90.5 8.7 0.00019 39.6 14.9 125 100-251 346-474 (587)
188 cd04935 ACT_AKiii-DAPDC_1 ACT 90.3 3.9 8.4E-05 30.5 9.1 57 224-284 11-67 (75)
189 COG4747 ACT domain-containing 90.1 2.1 4.5E-05 35.5 7.9 40 104-143 71-110 (142)
190 PRK13581 D-3-phosphoglycerate 89.6 0.96 2.1E-05 46.1 7.1 61 216-279 451-513 (526)
191 PRK06382 threonine dehydratase 89.6 2.5 5.4E-05 41.6 9.7 37 100-136 328-364 (406)
192 PRK06545 prephenate dehydrogen 89.6 1.4 3E-05 42.5 7.8 50 100-149 288-337 (359)
193 cd04904 ACT_AAAH ACT domain of 89.5 2.8 6E-05 31.0 7.8 46 105-150 3-49 (74)
194 PRK11898 prephenate dehydratas 89.2 2.3 5E-05 39.9 8.8 67 217-284 196-264 (283)
195 COG0440 IlvH Acetolactate synt 89.1 1.5 3.2E-05 38.1 6.7 66 103-174 5-70 (163)
196 cd04929 ACT_TPH ACT domain of 89.0 3.7 8.1E-05 30.7 8.1 49 105-155 3-52 (74)
197 PRK11790 D-3-phosphoglycerate 88.7 0.93 2E-05 44.8 6.0 60 87-148 325-384 (409)
198 COG0527 LysC Aspartokinases [A 88.6 29 0.00062 34.9 17.5 119 100-264 305-429 (447)
199 PLN02317 arogenate dehydratase 88.5 3.1 6.8E-05 40.9 9.4 67 217-284 283-364 (382)
200 TIGR01327 PGDH D-3-phosphoglyc 88.5 1 2.2E-05 45.9 6.3 61 216-279 450-512 (525)
201 cd04932 ACT_AKiii-LysC-EC_1 AC 88.4 5.4 0.00012 29.8 8.7 56 224-284 11-67 (75)
202 TIGR01270 Trp_5_monoox tryptop 88.1 2.4 5.2E-05 42.6 8.4 54 216-269 30-85 (464)
203 TIGR01127 ilvA_1Cterm threonin 87.9 3.9 8.5E-05 39.6 9.7 34 103-136 306-339 (380)
204 TIGR01127 ilvA_1Cterm threonin 87.8 3.9 8.5E-05 39.6 9.6 64 217-284 305-373 (380)
205 cd04922 ACT_AKi-HSDH-ThrA_2 AC 87.7 5.9 0.00013 27.6 8.3 34 219-252 3-39 (66)
206 TIGR01268 Phe4hydrox_tetr phen 87.3 3.7 8E-05 41.0 9.2 67 217-285 16-83 (436)
207 cd04898 ACT_ACR-like_4 ACT dom 86.6 1.7 3.6E-05 33.0 4.9 34 105-138 3-36 (77)
208 COG2150 Predicted regulator of 85.8 3.2 7E-05 36.0 6.8 60 217-278 93-155 (167)
209 COG0440 IlvH Acetolactate synt 85.6 3.1 6.6E-05 36.2 6.7 65 218-287 5-71 (163)
210 PRK10820 DNA-binding transcrip 85.0 1.1 2.5E-05 45.5 4.4 36 219-254 2-37 (520)
211 PRK08198 threonine dehydratase 84.8 7.4 0.00016 38.0 9.9 35 217-251 327-361 (404)
212 KOG2663 Acetolactate synthase, 84.8 2 4.2E-05 40.0 5.4 43 101-143 76-118 (309)
213 cd04934 ACT_AK-Hom3_1 CT domai 84.2 6 0.00013 29.4 7.0 54 225-284 12-65 (73)
214 COG0077 PheA Prephenate dehydr 84.0 6.2 0.00013 37.2 8.5 53 101-155 193-246 (279)
215 PRK06349 homoserine dehydrogen 83.8 6.1 0.00013 39.2 8.9 51 100-150 346-396 (426)
216 cd04919 ACT_AK-Hom3_2 ACT doma 83.4 13 0.00028 26.0 8.7 34 219-252 3-39 (66)
217 PRK11899 prephenate dehydratas 83.4 8.5 0.00019 36.2 9.2 52 102-155 194-246 (279)
218 PRK09084 aspartate kinase III; 82.9 37 0.0008 33.9 14.1 120 100-264 304-430 (448)
219 cd04937 ACT_AKi-DapG-BS_2 ACT 82.4 15 0.00032 26.1 8.3 28 219-246 3-33 (64)
220 cd04868 ACT_AK-like ACT domain 82.4 2.8 6.1E-05 27.8 4.3 33 219-251 2-37 (60)
221 cd04930 ACT_TH ACT domain of t 82.4 10 0.00022 30.9 8.2 49 102-150 41-90 (115)
222 COG3978 Acetolactate synthase 81.7 11 0.00023 29.1 7.4 47 217-263 3-51 (86)
223 cd04890 ACT_AK-like_1 ACT doma 81.5 9.2 0.0002 26.6 6.8 38 224-265 10-47 (62)
224 PRK09224 threonine dehydratase 81.5 65 0.0014 32.7 17.0 128 101-251 327-456 (504)
225 cd04933 ACT_AK1-AT_1 ACT domai 80.6 13 0.00029 28.0 7.8 38 224-265 11-48 (78)
226 PRK13581 D-3-phosphoglycerate 80.5 5.6 0.00012 40.6 7.4 40 101-140 451-490 (526)
227 cd04924 ACT_AK-Arch_2 ACT doma 80.3 17 0.00036 25.2 8.4 45 219-265 3-50 (66)
228 PRK08818 prephenate dehydrogen 79.7 5 0.00011 39.2 6.5 49 101-150 294-343 (370)
229 cd04937 ACT_AKi-DapG-BS_2 ACT 79.5 19 0.00042 25.4 8.3 28 104-131 3-33 (64)
230 cd04922 ACT_AKi-HSDH-ThrA_2 AC 79.1 18 0.0004 25.0 8.5 32 104-135 3-37 (66)
231 cd04912 ACT_AKiii-LysC-EC-like 78.9 16 0.00035 26.8 7.7 63 218-284 2-67 (75)
232 PRK08526 threonine dehydratase 77.5 19 0.00041 35.5 9.9 67 100-172 324-394 (403)
233 COG2150 Predicted regulator of 77.4 4.4 9.4E-05 35.2 4.6 36 100-135 93-128 (167)
234 cd04891 ACT_AK-LysC-DapG-like_ 77.3 3.8 8.2E-05 27.6 3.7 28 224-251 8-35 (61)
235 cd04912 ACT_AKiii-LysC-EC-like 77.3 26 0.00055 25.7 8.4 62 104-172 3-67 (75)
236 cd04921 ACT_AKi-HSDH-ThrA-like 77.0 17 0.00038 26.4 7.4 36 218-253 2-40 (80)
237 TIGR02079 THD1 threonine dehyd 76.4 23 0.0005 34.9 10.2 67 100-172 323-390 (409)
238 cd04913 ACT_AKii-LysC-BS-like_ 76.3 8.4 0.00018 27.1 5.4 27 224-250 9-35 (75)
239 KOG2663 Acetolactate synthase, 76.2 3.1 6.6E-05 38.7 3.6 43 217-261 77-119 (309)
240 PRK14646 hypothetical protein; 75.6 43 0.00093 28.7 10.4 60 114-175 8-67 (155)
241 cd04911 ACT_AKiii-YclM-BS_1 AC 75.6 9.7 0.00021 28.9 5.6 62 225-292 12-73 (76)
242 TIGR01327 PGDH D-3-phosphoglyc 75.0 6.8 0.00015 40.0 6.2 40 101-140 450-489 (525)
243 cd04919 ACT_AK-Hom3_2 ACT doma 74.2 27 0.00058 24.3 8.5 34 104-137 3-39 (66)
244 PRK08961 bifunctional aspartat 73.4 68 0.0015 34.8 13.5 104 100-245 320-429 (861)
245 PRK14634 hypothetical protein; 73.3 51 0.0011 28.2 10.3 60 114-175 8-67 (155)
246 PLN02550 threonine dehydratase 73.2 96 0.0021 32.4 14.0 151 103-284 418-572 (591)
247 PRK12483 threonine dehydratase 72.4 1E+02 0.0022 31.6 13.9 156 100-284 343-502 (521)
248 PRK08526 threonine dehydratase 72.4 26 0.00057 34.5 9.4 65 216-284 325-394 (403)
249 cd04916 ACT_AKiii-YclM-BS_2 AC 72.4 29 0.00063 23.9 8.3 34 219-252 3-39 (66)
250 cd04891 ACT_AK-LysC-DapG-like_ 71.8 26 0.00057 23.2 6.9 28 109-136 8-35 (61)
251 cd04892 ACT_AK-like_2 ACT doma 71.0 8.9 0.00019 25.9 4.3 32 219-250 2-36 (65)
252 COG4492 PheB ACT domain-contai 70.8 20 0.00043 30.3 6.9 50 94-143 64-113 (150)
253 PRK10622 pheA bifunctional cho 69.9 34 0.00074 33.6 9.5 52 102-155 297-349 (386)
254 cd04913 ACT_AKii-LysC-BS-like_ 69.1 33 0.00071 23.9 7.1 27 109-135 9-35 (75)
255 PRK09466 metL bifunctional asp 69.0 1.1E+02 0.0023 33.3 13.7 105 100-248 315-425 (810)
256 PRK14636 hypothetical protein; 68.9 56 0.0012 28.6 9.7 62 112-175 4-65 (176)
257 PRK14645 hypothetical protein; 68.1 75 0.0016 27.2 10.2 62 112-175 8-69 (154)
258 PRK08639 threonine dehydratase 67.6 47 0.001 32.8 10.1 67 100-172 334-401 (420)
259 cd04924 ACT_AK-Arch_2 ACT doma 67.4 38 0.00082 23.3 8.4 33 104-136 3-38 (66)
260 PF05088 Bac_GDH: Bacterial NA 67.1 54 0.0012 38.0 11.4 88 88-176 473-567 (1528)
261 COG3978 Acetolactate synthase 66.8 51 0.0011 25.4 7.7 64 102-174 3-68 (86)
262 cd04923 ACT_AK-LysC-DapG-like_ 66.8 37 0.0008 23.0 7.5 30 220-249 3-35 (63)
263 cd04868 ACT_AK-like ACT domain 66.4 34 0.00073 22.3 7.0 32 104-135 2-36 (60)
264 TIGR01124 ilvA_2Cterm threonin 65.5 52 0.0011 33.4 10.1 128 100-251 323-452 (499)
265 cd04918 ACT_AK1-AT_2 ACT domai 64.5 48 0.001 23.5 8.2 43 219-264 3-48 (65)
266 cd04890 ACT_AK-like_1 ACT doma 64.5 42 0.00092 23.1 6.8 24 110-133 11-34 (62)
267 cd04936 ACT_AKii-LysC-BS-like_ 63.7 15 0.00033 25.0 4.3 30 220-249 3-35 (63)
268 cd04918 ACT_AK1-AT_2 ACT domai 63.2 51 0.0011 23.3 8.3 35 104-138 3-39 (65)
269 cd04935 ACT_AKiii-DAPDC_1 ACT 62.9 60 0.0013 24.0 7.8 57 109-172 11-67 (75)
270 PRK00092 ribosome maturation p 61.4 1E+02 0.0022 26.1 10.3 57 115-175 9-65 (154)
271 COG3283 TyrR Transcriptional r 61.3 8.1 0.00018 38.1 3.2 36 219-254 2-37 (511)
272 cd04916 ACT_AKiii-YclM-BS_2 AC 60.7 52 0.0011 22.6 8.4 33 104-136 3-38 (66)
273 cd04892 ACT_AK-like_2 ACT doma 60.6 48 0.001 22.1 7.9 32 104-135 2-36 (65)
274 cd04932 ACT_AKiii-LysC-EC_1 AC 60.4 15 0.00033 27.3 4.0 30 104-133 3-35 (75)
275 PLN02317 arogenate dehydratase 59.8 65 0.0014 31.8 9.2 38 102-139 283-320 (382)
276 cd04915 ACT_AK-Ectoine_2 ACT d 59.0 64 0.0014 23.1 7.1 43 219-264 4-49 (66)
277 PRK14640 hypothetical protein; 58.7 1.1E+02 0.0025 25.9 10.2 58 115-176 8-65 (152)
278 TIGR01270 Trp_5_monoox tryptop 58.2 44 0.00096 33.7 7.9 53 98-150 27-81 (464)
279 PRK00907 hypothetical protein; 56.8 67 0.0015 25.2 7.2 64 102-172 17-84 (92)
280 PRK14647 hypothetical protein; 56.6 1.3E+02 0.0028 25.8 10.3 57 115-175 10-66 (159)
281 TIGR02079 THD1 threonine dehyd 56.0 88 0.0019 30.8 9.6 65 216-284 324-390 (409)
282 PRK06635 aspartate kinase; Rev 55.6 68 0.0015 31.2 8.7 34 100-133 338-374 (404)
283 cd04921 ACT_AKi-HSDH-ThrA-like 55.3 77 0.0017 22.9 8.7 33 104-136 3-38 (80)
284 PRK14639 hypothetical protein; 55.0 1.3E+02 0.0028 25.3 9.5 54 119-176 3-56 (140)
285 PTZ00324 glutamate dehydrogena 54.5 82 0.0018 34.9 9.7 63 89-151 216-283 (1002)
286 COG4492 PheB ACT domain-contai 54.5 23 0.00051 29.9 4.4 49 216-264 71-120 (150)
287 PRK11898 prephenate dehydratas 54.5 1E+02 0.0022 28.9 9.3 52 102-155 196-249 (283)
288 PRK02047 hypothetical protein; 54.2 75 0.0016 24.7 7.1 67 101-172 15-83 (91)
289 PRK14633 hypothetical protein; 52.7 1.4E+02 0.0031 25.3 10.2 75 115-228 6-82 (150)
290 PRK14638 hypothetical protein; 52.0 1.5E+02 0.0032 25.2 10.2 59 115-176 10-68 (150)
291 TIGR00656 asp_kin_monofn aspar 50.8 94 0.002 30.2 8.8 33 100-132 335-370 (401)
292 cd04914 ACT_AKi-DapG-BS_1 ACT 50.4 38 0.00083 24.4 4.6 30 219-248 3-33 (67)
293 cd04920 ACT_AKiii-DAPDC_2 ACT 50.1 88 0.0019 22.0 7.2 41 219-264 2-46 (63)
294 PF05088 Bac_GDH: Bacterial NA 48.9 1.1E+02 0.0025 35.5 10.1 199 88-289 327-568 (1528)
295 TIGR01268 Phe4hydrox_tetr phen 48.6 1.1E+02 0.0025 30.7 9.0 52 102-155 16-68 (436)
296 PRK14646 hypothetical protein; 48.4 1.7E+02 0.0038 24.9 9.4 62 230-291 9-71 (155)
297 PRK12483 threonine dehydratase 46.6 1.1E+02 0.0024 31.3 8.9 62 217-284 345-408 (521)
298 cd04936 ACT_AKii-LysC-BS-like_ 46.1 90 0.0019 20.9 8.3 30 105-134 3-35 (63)
299 PRK14632 hypothetical protein; 45.8 2E+02 0.0044 25.0 10.1 75 115-228 10-86 (172)
300 PRK08210 aspartate kinase I; R 45.5 1.1E+02 0.0024 29.8 8.4 33 100-132 337-372 (403)
301 PRK08639 threonine dehydratase 45.4 1.2E+02 0.0025 30.0 8.6 65 216-284 335-401 (420)
302 PRK00341 hypothetical protein; 44.6 1.2E+02 0.0027 23.5 6.9 63 102-172 17-83 (91)
303 PRK14630 hypothetical protein; 44.5 1.9E+02 0.0042 24.3 10.1 82 107-228 2-85 (143)
304 PRK10820 DNA-binding transcrip 43.7 37 0.0008 34.6 4.9 35 104-138 2-36 (520)
305 KOG0456 Aspartate kinase [Amin 42.8 1.9E+02 0.0042 28.9 9.3 111 111-263 405-517 (559)
306 PRK14643 hypothetical protein; 40.7 2.4E+02 0.0052 24.4 10.1 76 115-228 11-92 (164)
307 PRK14634 hypothetical protein; 40.4 2.3E+02 0.0051 24.1 9.1 60 230-289 9-69 (155)
308 PRK14638 hypothetical protein; 40.3 2.3E+02 0.005 24.0 8.5 59 232-290 12-70 (150)
309 cd04923 ACT_AK-LysC-DapG-like_ 40.0 1.1E+02 0.0025 20.4 8.4 30 105-134 3-35 (63)
310 PRK14631 hypothetical protein; 39.3 2.6E+02 0.0057 24.4 10.5 77 115-228 10-105 (174)
311 PRK14639 hypothetical protein; 38.2 2.4E+02 0.0052 23.6 8.3 62 234-296 3-64 (140)
312 cd04917 ACT_AKiii-LysC-EC_2 AC 38.1 1.4E+02 0.0029 20.8 7.7 42 218-264 2-47 (64)
313 PRK15385 magnesium transport p 37.9 2.4E+02 0.0052 25.8 8.7 66 216-283 141-210 (225)
314 PRK14637 hypothetical protein; 36.7 2.7E+02 0.0058 23.7 9.1 60 228-288 8-67 (151)
315 COG0779 Uncharacterized protei 36.4 2.8E+02 0.006 23.8 9.9 59 113-175 8-66 (153)
316 cd04933 ACT_AK1-AT_1 ACT domai 35.9 38 0.00082 25.6 2.7 25 109-133 11-35 (78)
317 cd04915 ACT_AK-Ectoine_2 ACT d 35.6 1.6E+02 0.0035 20.9 6.8 32 104-135 4-37 (66)
318 PRK04998 hypothetical protein; 35.3 2E+02 0.0044 22.0 7.0 68 100-172 13-80 (88)
319 PRK09224 threonine dehydratase 33.6 2.3E+02 0.005 28.8 8.8 63 217-284 328-391 (504)
320 PRK14636 hypothetical protein; 33.6 3.3E+02 0.0071 23.8 8.6 61 229-289 6-67 (176)
321 cd07247 SgaA_N_like N-terminal 33.5 1.7E+02 0.0037 21.9 6.3 51 100-157 60-110 (114)
322 TIGR01124 ilvA_2Cterm threonin 33.4 2E+02 0.0044 29.2 8.3 63 216-284 324-387 (499)
323 PF09383 NIL: NIL domain; Int 33.0 1.9E+02 0.0041 20.9 8.6 61 104-171 6-67 (76)
324 COG3603 Uncharacterized conser 31.1 71 0.0015 26.5 3.7 30 218-247 64-96 (128)
325 cd04914 ACT_AKi-DapG-BS_1 ACT 30.6 92 0.002 22.3 4.0 30 104-133 3-33 (67)
326 PRK09034 aspartate kinase; Rev 30.6 2.7E+02 0.0059 27.8 8.6 38 100-137 383-423 (454)
327 PRK08841 aspartate kinase; Val 30.5 2.9E+02 0.0063 27.1 8.6 33 100-132 316-348 (392)
328 cd04920 ACT_AKiii-DAPDC_2 ACT 30.1 2E+02 0.0043 20.2 7.9 27 104-130 2-31 (63)
329 TIGR00657 asp_kinases aspartat 30.0 3.2E+02 0.007 27.0 9.0 35 100-134 376-413 (441)
330 PLN02550 threonine dehydratase 29.9 2.1E+02 0.0045 30.0 7.8 62 217-284 417-479 (591)
331 PRK00092 ribosome maturation p 29.5 3.5E+02 0.0075 22.8 9.2 60 230-290 9-68 (154)
332 PF02576 DUF150: Uncharacteris 29.3 2.5E+02 0.0054 23.2 7.0 54 234-288 2-55 (141)
333 PF14226 DIOX_N: non-haem diox 28.5 13 0.00027 29.2 -1.0 51 224-293 10-60 (116)
334 PRK06291 aspartate kinase; Pro 28.3 3.6E+02 0.0077 27.0 9.0 39 100-138 396-437 (465)
335 PRK08841 aspartate kinase; Val 28.2 82 0.0018 31.0 4.4 61 216-287 317-377 (392)
336 PRK09084 aspartate kinase III; 27.1 3E+02 0.0066 27.4 8.2 34 216-249 305-341 (448)
337 PLN02551 aspartokinase 26.2 3.8E+02 0.0083 27.5 8.9 38 100-137 443-482 (521)
338 PRK14645 hypothetical protein; 25.2 4.3E+02 0.0094 22.5 9.3 60 230-289 11-71 (154)
339 cd04934 ACT_AK-Hom3_1 CT domai 23.1 78 0.0017 23.3 2.5 54 110-172 12-65 (73)
340 COG2061 ACT-domain-containing 23.1 98 0.0021 26.8 3.3 34 102-135 5-38 (170)
341 PF09904 HTH_43: Winged helix- 22.5 1.9E+02 0.0042 22.7 4.6 40 231-273 38-77 (90)
342 PRK14640 hypothetical protein; 22.0 4.9E+02 0.011 22.0 9.0 58 230-289 8-66 (152)
343 PRK14637 hypothetical protein; 21.7 5E+02 0.011 22.0 8.2 62 110-175 5-66 (151)
344 PRK00907 hypothetical protein; 21.6 3.2E+02 0.0069 21.4 5.7 48 217-264 17-68 (92)
345 COG3603 Uncharacterized conser 21.5 2.3E+02 0.0051 23.5 5.1 39 99-137 60-101 (128)
346 PRK08961 bifunctional aspartat 21.2 3.9E+02 0.0084 29.1 8.2 33 216-248 321-356 (861)
347 PRK10738 hypothetical protein; 20.3 2.3E+02 0.005 23.4 5.0 49 232-280 50-106 (134)
348 cd07247 SgaA_N_like N-terminal 20.3 3.7E+02 0.0081 20.0 6.2 49 216-270 61-110 (114)
349 PLN02704 flavonol synthase 20.2 1.1E+02 0.0024 29.2 3.4 58 217-293 43-100 (335)
No 1
>PRK05007 PII uridylyl-transferase; Provisional
Probab=100.00 E-value=2.1e-32 Score=288.46 Aligned_cols=191 Identities=24% Similarity=0.290 Sum_probs=167.4
Q ss_pred CCcEEEEeecCCCCeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEeCCeE-EEEEEEeecCCCCCCCChHHHHHH
Q 022480 88 PMPHVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVK-QTKFFITRLDTGRKVEDPDLLERI 166 (296)
Q Consensus 88 ~~p~V~i~~~~~~~~t~V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~~~~~-~d~F~V~~~~~g~~l~~~~~l~~L 166 (296)
++|.|.++++.+.++++|+|+++||||||++||++|+.+|+||++|+|+|++++. +|+|+|++. +|.++. ++++++|
T Consensus 687 ~~p~V~i~~~~~~~~t~V~V~a~DrpGLfa~Ia~~La~~~L~I~~A~I~T~~dg~alD~F~V~d~-~g~~~~-~~~~~~I 764 (884)
T PRK05007 687 DKPLVLLSKQATRGGTEIFIWSPDRPYLFAAVCAELDRRNLSVHDAQIFTSRDGMAMDTFIVLEP-DGSPLS-QDRHQVI 764 (884)
T ss_pred CCCeEEEEecCCCCeEEEEEEecCCcCHHHHHHHHHHHCCCEEEEEEEEEcCCCeEEEEEEEECC-CCCCCC-HHHHHHH
Confidence 5789999999999999999999999999999999999999999999999999865 699999996 888874 5799999
Q ss_pred HHHHHHhhcccCCCchhHhhhccccCccCCCccccccccceeeeccCCC-CcEEEEEEeCCCcchHHHHHHHHHhCCceE
Q 022480 167 RLTIINNLLKYHPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGP-KRSLLYIETADRPGLLVEIMKIIADVNVDV 245 (296)
Q Consensus 167 ~~~L~~~L~~~~~~~~~~La~~~~~~~~~~~r~~~~~~~~~V~v~~~~~-~~TvleV~t~DRPGLL~dIt~~La~~gv~I 245 (296)
++.|.++|.+.... .. . .+ +.+++...+.++++|.++|+.+ .+|+|+|.|.|||||||+|+++|.++|++|
T Consensus 765 ~~~L~~aL~~~~~~-~~-~----~~--~~~~~~~~~~~~~~V~~d~~~s~~~TvlEV~a~DRpGLL~~I~~~l~~~~l~I 836 (884)
T PRK05007 765 RKALEQALTQSSPQ-PP-K----PR--RLPAKLRHFNVPTEVSFLPTHTDRRSYMELIALDQPGLLARVGKIFADLGISL 836 (884)
T ss_pred HHHHHHHHcCCCCC-cc-c----cc--ccccccCCCCCCCEEEEccCCCCCeEEEEEEeCCchHHHHHHHHHHHHCCcEE
Confidence 99999999763211 11 1 11 1234556678899999999875 499999999999999999999999999999
Q ss_pred EEEEEEecCCeeeeEEEEEe-CCCCCChHHHHHHHHHHHHHcCC
Q 022480 246 ESAEIDTEGLVAKDKFHVSY-GGAALNSSLSQVLVNCLRYYLRR 288 (296)
Q Consensus 246 ~~AkI~T~G~ra~D~F~V~~-~g~~L~~~~~~~L~~~L~~~l~~ 288 (296)
++|||+|.|++|+|+|||++ +|+||+++.+++|+++|+++|..
T Consensus 837 ~~AkI~T~gera~DvFyV~~~~g~~l~~~~~~~l~~~L~~~l~~ 880 (884)
T PRK05007 837 HGARITTIGERVEDLFILATADRRALNEELQQELRQRLTEALNP 880 (884)
T ss_pred EEEEEeccCceEEEEEEEEcCCCCcCCHHHHHHHHHHHHHHHhh
Confidence 99999999999999999998 89999977889999999999865
No 2
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=100.00 E-value=3e-32 Score=286.44 Aligned_cols=189 Identities=18% Similarity=0.246 Sum_probs=164.1
Q ss_pred CCcEEEEeecCCCCeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEeCC-eEEEEEEEeecCCCCCCCChHHHHHH
Q 022480 88 PMPHVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGS-VKQTKFFITRLDTGRKVEDPDLLERI 166 (296)
Q Consensus 88 ~~p~V~i~~~~~~~~t~V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~~~-~~~d~F~V~~~~~g~~l~~~~~l~~L 166 (296)
..|.|.++++.+.++++|+|+++||||||++|+++|+.+|+||++|+|+|+.+ .++|+|+|++. +|.++. ++++++|
T Consensus 663 ~~~~V~i~~~~~~~~t~V~V~~~DrpGLfa~Ia~~L~~~~L~I~~A~I~T~~~g~alD~F~V~d~-~g~~~~-~~~~~~l 740 (854)
T PRK01759 663 GDLLVKISNRFSRGGTEIFIYCQDQANLFLKVVSTIGAKKLSIHDAQIITSQDGYVLDSFIVTEL-NGKLLE-FDRRRQL 740 (854)
T ss_pred CCCEEEEEecCCCCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEEEEEEccCCEEEEEEEEeCC-CCCCCC-HHHHHHH
Confidence 46889999999999999999999999999999999999999999999999655 45799999996 898884 5899999
Q ss_pred HHHHHHhhcccCCCchhHhhhccccCccCCCccccccccceeeeccCCC-CcEEEEEEeCCCcchHHHHHHHHHhCCceE
Q 022480 167 RLTIINNLLKYHPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGP-KRSLLYIETADRPGLLVEIMKIIADVNVDV 245 (296)
Q Consensus 167 ~~~L~~~L~~~~~~~~~~La~~~~~~~~~~~r~~~~~~~~~V~v~~~~~-~~TvleV~t~DRPGLL~dIt~~La~~gv~I 245 (296)
++.|.++|.+.. ..... + +.+++...+.++++|.++|+.+ .+|+|+|.|.|||||||+|+++|.++|++|
T Consensus 741 ~~~L~~aL~~~~-~~~~~------~--~~~~~~~~~~~~~~V~~dn~~s~~~T~iev~a~DrpGLL~~I~~~l~~~~l~i 811 (854)
T PRK01759 741 EQALTKALNTNK-LKKLN------L--EENHKLQHFHVKTEVRFLNEEKQEQTEMELFALDRAGLLAQVSQVFSELNLNL 811 (854)
T ss_pred HHHHHHHHcCCC-Ccchh------c--cccccccCCCCCCEEEEccCCCCCeEEEEEEeCCchHHHHHHHHHHHHCCCEE
Confidence 999999997621 11100 1 1123445677889999999875 499999999999999999999999999999
Q ss_pred EEEEEEecCCeeeeEEEEEe-CCCCCChHHHHHHHHHHHHHcC
Q 022480 246 ESAEIDTEGLVAKDKFHVSY-GGAALNSSLSQVLVNCLRYYLR 287 (296)
Q Consensus 246 ~~AkI~T~G~ra~D~F~V~~-~g~~L~~~~~~~L~~~L~~~l~ 287 (296)
++|||+|.|++|+|+|||++ +|+||+++.+++|+++|.++|.
T Consensus 812 ~~AkI~T~gerv~D~Fyv~~~~g~~l~~~~~~~l~~~L~~~l~ 854 (854)
T PRK01759 812 LNAKITTIGEKAEDFFILTNQQGQALDEEERKALKSRLLSNLS 854 (854)
T ss_pred EEEEEcccCceEEEEEEEECCCCCcCChHHHHHHHHHHHHHhC
Confidence 99999999999999999998 8999998867999999998863
No 3
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=99.97 E-value=2.2e-29 Score=265.84 Aligned_cols=199 Identities=21% Similarity=0.313 Sum_probs=167.7
Q ss_pred CCcEEEEeecCC---CCeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEeCCeE-EEEEEEeecCCCCCCC-ChHH
Q 022480 88 PMPHVLIDQDSN---SDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVK-QTKFFITRLDTGRKVE-DPDL 162 (296)
Q Consensus 88 ~~p~V~i~~~~~---~~~t~V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~~~~~-~d~F~V~~~~~g~~l~-~~~~ 162 (296)
..|.|.+..... .++++|+|+++||||||+++|++|+.+|+||++|+|+|+++++ +|+|+|++. +|.++. ++++
T Consensus 687 ~~~~v~~~~~~~~~~~~~t~V~V~~~DrpgLFa~i~g~L~~~~lnI~~A~I~Tt~dg~alD~F~V~d~-~g~~~~~~~~r 765 (895)
T PRK00275 687 GGPLVLIKETTQREFEGGTQIFIYAPDQHDFFAATVAAMDQLNLNIHDARIITSSSQFTLDTYIVLDD-DGEPIGDNPAR 765 (895)
T ss_pred CCCeEEEEecCccCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEcCCCeEEEEEEEeCC-CCCCccchHHH
Confidence 357888877776 5899999999999999999999999999999999999998877 699999996 888754 4589
Q ss_pred HHHHHHHHHHhhcccCCCchhHhhhccccCccCCCccccccccceeeeccCCC-CcEEEEEEeCCCcchHHHHHHHHHhC
Q 022480 163 LERIRLTIINNLLKYHPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGP-KRSLLYIETADRPGLLVEIMKIIADV 241 (296)
Q Consensus 163 l~~L~~~L~~~L~~~~~~~~~~La~~~~~~~~~~~r~~~~~~~~~V~v~~~~~-~~TvleV~t~DRPGLL~dIt~~La~~ 241 (296)
+++|++.|.++|.+. .+....++ + +.+++...+.+++.|.++++.+ ++|+|+|.|.||||||++|+++|+++
T Consensus 766 ~~~i~~~L~~~L~~~-~~~~~~~~----~--~~~~~~~~~~~~~~V~i~~~~~~~~T~i~V~a~DrpGLLa~I~~~L~~~ 838 (895)
T PRK00275 766 IEQIREGLTEALRNP-DDYPTIIQ----R--RVPRQLKHFAFPTQVTISNDAQRPVTVLEIIAPDRPGLLARIGRIFLEF 838 (895)
T ss_pred HHHHHHHHHHHHcCC-Cccchhhh----h--hhhhhccCCCCCCEEEEEECCCCCeEEEEEEECCCCCHHHHHHHHHHHC
Confidence 999999999999763 22222332 1 1233445567788888888764 59999999999999999999999999
Q ss_pred CceEEEEEEEecCCeeeeEEEEEe-CCCCCChH-HHHHHHHHHHHHcCCCCCccC
Q 022480 242 NVDVESAEIDTEGLVAKDKFHVSY-GGAALNSS-LSQVLVNCLRYYLRRPETDID 294 (296)
Q Consensus 242 gv~I~~AkI~T~G~ra~D~F~V~~-~g~~L~~~-~~~~L~~~L~~~l~~~~~~~~ 294 (296)
|++|+.|+|.|.|++|+|+|||++ +|.++.++ .+++|+++|.++|..+...+.
T Consensus 839 ~l~I~~AkI~T~g~~v~D~F~V~d~~g~~l~~~~~~~~l~~~L~~~L~~~~~~~~ 893 (895)
T PRK00275 839 DLSLQNAKIATLGERVEDVFFITDADNQPLSDPQLCSRLQDAICEQLDARNEKDT 893 (895)
T ss_pred CCEEEEeEEEecCCEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHhccccccC
Confidence 999999999999999999999998 89999876 778999999999977765543
No 4
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
Probab=99.97 E-value=2.1e-29 Score=265.31 Aligned_cols=193 Identities=22% Similarity=0.296 Sum_probs=165.0
Q ss_pred CCcEEEEeecCCCCeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEeCCe-EEEEEEEeecCCCCCCCChHHHHHH
Q 022480 88 PMPHVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSV-KQTKFFITRLDTGRKVEDPDLLERI 166 (296)
Q Consensus 88 ~~p~V~i~~~~~~~~t~V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~~~~-~~d~F~V~~~~~g~~l~~~~~l~~L 166 (296)
..|.|.+++....++++|+|+++||||||++||++|+.+|+||++|+|+|+.++ .+|+|+|++. +|.++.+++++++|
T Consensus 654 ~~~~v~~~~~~~~~~t~i~V~~~DrpgLla~i~~~L~~~~l~I~~A~I~tt~~g~~lD~F~V~~~-~g~~~~~~~~~~~i 732 (850)
T TIGR01693 654 GGPLALIDGTRPSGGTEVFIYAPDQPGLFAKVAGALAMLSLSVHDAQVNTTKDGVALDTFVVQDL-FGSPPAAERVFQEL 732 (850)
T ss_pred CCCEEEEeccCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEecCCEEEEEEEEECC-CCCCCCcHHHHHHH
Confidence 468999988777999999999999999999999999999999999999977555 5799999996 88888777789999
Q ss_pred HHHHHHhhcccCCCchhHhhhccccCccCCCccccccccceeeeccCCC-CcEEEEEEeCCCcchHHHHHHHHHhCCceE
Q 022480 167 RLTIINNLLKYHPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGP-KRSLLYIETADRPGLLVEIMKIIADVNVDV 245 (296)
Q Consensus 167 ~~~L~~~L~~~~~~~~~~La~~~~~~~~~~~r~~~~~~~~~V~v~~~~~-~~TvleV~t~DRPGLL~dIt~~La~~gv~I 245 (296)
++.|.++|.+.. .....+. ++.+.+++...+.++++|.++|+.+ ++|+|+|.|.|||||||+|+++|+++|++|
T Consensus 733 ~~~L~~~L~~~~-~~~~~~~----~~~~~~~~~~~~~~~~~V~~d~~~s~~~t~~~v~~~DrpGll~~i~~~l~~~~~~i 807 (850)
T TIGR01693 733 LQGLVDVLAGLA-KDPDTIS----ARRARRRRLQHFAVPPRVTILNTASRKATIMEVRALDRPGLLARVGRTLEELGLSI 807 (850)
T ss_pred HHHHHHHHcCCC-ccccccc----cccCCcccccCCCCCCeEEEccCCCCCeEEEEEEECCccHHHHHHHHHHHHCCCeE
Confidence 999999997621 1111111 1100234555677899999999875 499999999999999999999999999999
Q ss_pred EEEEEEecCCeeeeEEEEEe-CCCCCChHHHHHHHHHHHHHc
Q 022480 246 ESAEIDTEGLVAKDKFHVSY-GGAALNSSLSQVLVNCLRYYL 286 (296)
Q Consensus 246 ~~AkI~T~G~ra~D~F~V~~-~g~~L~~~~~~~L~~~L~~~l 286 (296)
++|+|.|+|++++|+|||++ .|.|+++++++.|+++|.++|
T Consensus 808 ~~a~i~t~~~~~~d~F~v~~~~g~~~~~~~~~~l~~~L~~~l 849 (850)
T TIGR01693 808 QSAKITTFGEKAEDVFYVTDLFGLKLTDEEEQRLLEVLAASV 849 (850)
T ss_pred EEEEEEecCccceeEEEEECCCCCCCCHHHHHHHHHHHHHHh
Confidence 99999999999999999997 899999888899999999876
No 5
>PRK05092 PII uridylyl-transferase; Provisional
Probab=99.96 E-value=3.4e-28 Score=258.11 Aligned_cols=199 Identities=21% Similarity=0.302 Sum_probs=168.2
Q ss_pred CCcEEEEeecCCCCeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEeCCeE-EEEEEEeecCCCCCCCChHHHHHH
Q 022480 88 PMPHVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVK-QTKFFITRLDTGRKVEDPDLLERI 166 (296)
Q Consensus 88 ~~p~V~i~~~~~~~~t~V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~~~~~-~d~F~V~~~~~g~~l~~~~~l~~L 166 (296)
.++.|.+.+....++++|+|+++||||||++||++|+.+||||++|+|+|+.+++ +|+|+|++. +|.+..+++++++|
T Consensus 718 ~~~~v~~~~~~~~~~t~v~I~~~Dr~GLfa~i~~~L~~~glnI~~A~I~t~~dg~alD~F~V~~~-~g~~~~~~~~~~~l 796 (931)
T PRK05092 718 RPLATEVRPDPARGVTEVTVLAADHPGLFSRIAGACAAAGANIVDARIFTTTDGRALDTFWIQDA-FGRDEDEPRRLARL 796 (931)
T ss_pred CCcEEEEEecCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCcEEEEEEEEecCCeEEEEEEEECC-CCCCCCCHHHHHHH
Confidence 4578889999999999999999999999999999999999999999999987776 699999996 88877677899999
Q ss_pred HHHHHHhhcccCCCchhHhhhccccCccCC-CccccccccceeeeccCCC-CcEEEEEEeCCCcchHHHHHHHHHhCCce
Q 022480 167 RLTIINNLLKYHPESSEQLAMGEAFGIKAP-EKKLDVDIATHIHVKEDGP-KRSLLYIETADRPGLLVEIMKIIADVNVD 244 (296)
Q Consensus 167 ~~~L~~~L~~~~~~~~~~La~~~~~~~~~~-~r~~~~~~~~~V~v~~~~~-~~TvleV~t~DRPGLL~dIt~~La~~gv~ 244 (296)
++.|..++.+. ..+...+. ++ ..+ ++...+..++.|.++++.+ ++|+|+|.+.||||||++|+++|+++|+|
T Consensus 797 ~~~L~~~l~~~-~~~~~~~~----~r-~~~~~~~~~~~~~~~V~~~~~~s~~~t~i~I~~~DrpGLl~~I~~~l~~~gl~ 870 (931)
T PRK05092 797 AKAIEDALSGE-VRLPEALA----KR-TKPKKRARAFHVPPRVTIDNEASNRFTVIEVNGRDRPGLLYDLTRALSDLNLN 870 (931)
T ss_pred HHHHHHHHcCC-CCCccccc----cc-cCccccccCCCCCCEEEEeeCCCCCeEEEEEEECCcCcHHHHHHHHHHHCCce
Confidence 99999988652 22212121 11 112 1345567888999988774 48999999999999999999999999999
Q ss_pred EEEEEEEecCCeeeeEEEEEe-CCCCCChH-HHHHHHHHHHHHcCCCCCcc
Q 022480 245 VESAEIDTEGLVAKDKFHVSY-GGAALNSS-LSQVLVNCLRYYLRRPETDI 293 (296)
Q Consensus 245 I~~AkI~T~G~ra~D~F~V~~-~g~~L~~~-~~~~L~~~L~~~l~~~~~~~ 293 (296)
|.+|+|.|.|+++.|+|||++ +|.++.++ .+++|+++|..+|..+..|.
T Consensus 871 I~~A~I~T~~~~~~D~F~v~d~~g~~i~~~~~~~~l~~~L~~~L~~~~~~~ 921 (931)
T PRK05092 871 IASAHIATYGERAVDVFYVTDLFGLKITNEARQAAIRRALLAALAEGEAEA 921 (931)
T ss_pred EEEEEEEEcCCEEEEEEEEeCCCCCcCCCHHHHHHHHHHHHHHhcCccccc
Confidence 999999999999999999998 89999877 78899999999997665543
No 6
>PRK04374 PII uridylyl-transferase; Provisional
Probab=99.96 E-value=3.6e-28 Score=255.54 Aligned_cols=188 Identities=20% Similarity=0.217 Sum_probs=159.7
Q ss_pred CcEEEEee-cCCCCeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEeCCeE-EEEEEEeecCCCCCCCChHHHHHH
Q 022480 89 MPHVLIDQ-DSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVK-QTKFFITRLDTGRKVEDPDLLERI 166 (296)
Q Consensus 89 ~p~V~i~~-~~~~~~t~V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~~~~~-~d~F~V~~~~~g~~l~~~~~l~~L 166 (296)
.|.|.+.. .+..+.++|+|+++||||||++||++|+.+|+||++|+|+|+.+++ +|+|+|.++ +|.. ++++++|
T Consensus 676 ~~~v~~~~~~~~~~~~~v~v~~~d~~gLFa~i~g~l~~~~lnI~~A~i~t~~~g~~ld~f~V~~~-~~~~---~~~~~~i 751 (869)
T PRK04374 676 QTLVKARRAVPDNDALEVFVYSPDRDGLFAAIVATLDRKGYGIHRARVLDAPHDAIFDVFEVLPQ-DTYA---DGDPQRL 751 (869)
T ss_pred CCeEEEeeeccCCCeEEEEEEeCCCccHHHHHHHHHHHCCCeEEEEEEEEcCCCEEEEEEEEeCC-CCCC---hHHHHHH
Confidence 46777655 7788999999999999999999999999999999999999998877 699999996 6653 3678889
Q ss_pred HHHHHHhhcccCCCchhHhhhccccCccCCCccccccccceeeeccCCC-CcEEEEEEeCCCcchHHHHHHHHHhCCceE
Q 022480 167 RLTIINNLLKYHPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGP-KRSLLYIETADRPGLLVEIMKIIADVNVDV 245 (296)
Q Consensus 167 ~~~L~~~L~~~~~~~~~~La~~~~~~~~~~~r~~~~~~~~~V~v~~~~~-~~TvleV~t~DRPGLL~dIt~~La~~gv~I 245 (296)
++.|.++|.+. .+... +. ++ +.+++...+.++++|.++++.+ ++|+|+|.|.|||||||+|+.+|+++|++|
T Consensus 752 ~~~l~~~l~~~-~~~~~-~~----~~-~~~~~~~~~~~~~~V~~~~~~~~~~t~leI~a~DrpGLLa~Ia~~l~~~~l~I 824 (869)
T PRK04374 752 AAALRQVLAGD-LQKVR-PA----RR-AVPRQLRHFRFAPRVEFSESAGGRRTRISLVAPDRPGLLADVAHVLRMQHLRV 824 (869)
T ss_pred HHHHHHHHcCC-CCccc-cc----cc-cCcccccCCCCCCeEEEeecCCCCeEEEEEEeCCcCcHHHHHHHHHHHCCCeE
Confidence 99999999762 22111 21 11 2234556778899999888664 699999999999999999999999999999
Q ss_pred EEEEEEecCCeeeeEEEEEe-CCCCCChHHHHHHHHHHHHHcC
Q 022480 246 ESAEIDTEGLVAKDKFHVSY-GGAALNSSLSQVLVNCLRYYLR 287 (296)
Q Consensus 246 ~~AkI~T~G~ra~D~F~V~~-~g~~L~~~~~~~L~~~L~~~l~ 287 (296)
++|+|.|.|++|+|+|||++ +|.++.++++++|+++|.++|.
T Consensus 825 ~~AkI~T~g~~a~D~F~V~d~~g~~~~~~~~~~l~~~L~~~l~ 867 (869)
T PRK04374 825 HDARIATFGERAEDQFQITDEHDRPLSESARQALRDALCACLD 867 (869)
T ss_pred EEeEEEecCCEEEEEEEEECCCCCcCChHHHHHHHHHHHHHhc
Confidence 99999999999999999998 8899988866999999999884
No 7
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=2.6e-28 Score=248.06 Aligned_cols=192 Identities=27% Similarity=0.325 Sum_probs=168.6
Q ss_pred CCCcEEEEeecCCCCeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEeCCeE-EEEEEEeecCCCCCCCChHHHHH
Q 022480 87 IPMPHVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVK-QTKFFITRLDTGRKVEDPDLLER 165 (296)
Q Consensus 87 ~~~p~V~i~~~~~~~~t~V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~~~~~-~d~F~V~~~~~g~~l~~~~~l~~ 165 (296)
...|.|.+......+.++|+|+++|+|.||+.+|+.+...|+||++|+|+|+.+|+ +|+|+|+++ +|.++. +++...
T Consensus 669 ~~~~Lv~~~~r~~~~~teV~V~a~d~p~Lfa~v~~~~~~~g~~i~dAqi~tt~dG~alDtfiv~~~-~g~~~~-~dr~~~ 746 (867)
T COG2844 669 LGKPLVLISVRPHSGGTEVFVYAPDRPRLFAVVCAALSRRGLSIVDAQIFTTRDGYALDTFIVLEP-DGFPVE-EDRRAA 746 (867)
T ss_pred ccCcceeeeecccCCceEEEEEcCCCccHHHHHHHHHccCCCceeeeEEEEccCCceeeeEEEecC-CCCccc-hhHHHH
Confidence 35699999988888999999999999999999999999999999999999999985 799999997 898886 688888
Q ss_pred HHHHHHHhhcccCCCchhHhhhccccCccCCCccccccccceeeeccCCCC-cEEEEEEeCCCcchHHHHHHHHHhCCce
Q 022480 166 IRLTIINNLLKYHPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPK-RSLLYIETADRPGLLVEIMKIIADVNVD 244 (296)
Q Consensus 166 L~~~L~~~L~~~~~~~~~~La~~~~~~~~~~~r~~~~~~~~~V~v~~~~~~-~TvleV~t~DRPGLL~dIt~~La~~gv~ 244 (296)
++..|.+++..+... + +.+.+.+++..+|+++++|.+.+..++ .|+|||++.||||||++|+++|+++|++
T Consensus 747 ~~~~l~~~l~s~~~~--~------~~~~r~~r~~~~f~i~p~v~i~~t~~~~~t~lEv~alDRpGLLa~v~~v~~dl~l~ 818 (867)
T COG2844 747 LRGELIEALLSGKAQ--P------PRRRRIPRKLRHFPIPPRVTILPTASNDKTVLEVRALDRPGLLAALAGVFADLGLS 818 (867)
T ss_pred HHHHHHHHHhcCCCC--C------ccccccCcccceeccCCceeeccccCCCceEEEEEeCCcccHHHHHHHHHHhcccc
Confidence 888888888764321 1 122255567778999999999887755 9999999999999999999999999999
Q ss_pred EEEEEEEecCCeeeeEEEEEe-CCCCCChHHHHHHHHHHHHHcCC
Q 022480 245 VESAEIDTEGLVAKDKFHVSY-GGAALNSSLSQVLVNCLRYYLRR 288 (296)
Q Consensus 245 I~~AkI~T~G~ra~D~F~V~~-~g~~L~~~~~~~L~~~L~~~l~~ 288 (296)
|++|||+|.|++|+|+|||++ .|.+++.+.++.|.+.|.+++..
T Consensus 819 i~~AkItT~GErveD~F~vt~~~~~~l~~~~~q~l~~~ll~al~~ 863 (867)
T COG2844 819 LHSAKITTFGERVEDVFIVTDADGQALNAELRQSLLQRLLEALLP 863 (867)
T ss_pred eeeeeeccccccceeEEEEeccccccCCHHHHHHHHHHHHHHhcc
Confidence 999999999999999999998 99999888888888888887754
No 8
>PRK03059 PII uridylyl-transferase; Provisional
Probab=99.96 E-value=3.3e-27 Score=248.39 Aligned_cols=189 Identities=20% Similarity=0.255 Sum_probs=157.8
Q ss_pred CCcEEEEeecCCCCeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEeCCeE-EEEEEEeecCCCCCCCChHHHHHH
Q 022480 88 PMPHVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVK-QTKFFITRLDTGRKVEDPDLLERI 166 (296)
Q Consensus 88 ~~p~V~i~~~~~~~~t~V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~~~~~-~d~F~V~~~~~g~~l~~~~~l~~L 166 (296)
..|.|.+......+.++|+|+++||||||+++|++|+.+|+||++|+|+|+.+++ +|+|+|.++ +|. +.+++++++|
T Consensus 664 ~~~~v~~~~~~~~~~~~v~i~~~d~~gLFa~i~g~l~~~~l~I~~A~i~t~~~g~~ld~f~V~~~-~~~-~~~~~~~~~i 741 (856)
T PRK03059 664 DTPIVRARLSPAGEGLQVMVYTPDQPDLFARICGYFDRAGFSILDARVHTTRHGYALDTFQVLDP-EED-VHYRDIINLV 741 (856)
T ss_pred CCCeEEEEecCCCCeEEEEEEecCCCcHHHHHHHHHHHCCCceeeeEEEEcCCCeEEEEEEEeCC-CCC-CChHHHHHHH
Confidence 3578889888999999999999999999999999999999999999999998877 699999995 666 4556899999
Q ss_pred HHHHHHhhcccCCCchhHhhhccccCccCCCccccccccceeeeccCC-CCcEEEEEEeCCCcchHHHHHHHHHhCCceE
Q 022480 167 RLTIINNLLKYHPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDG-PKRSLLYIETADRPGLLVEIMKIIADVNVDV 245 (296)
Q Consensus 167 ~~~L~~~L~~~~~~~~~~La~~~~~~~~~~~r~~~~~~~~~V~v~~~~-~~~TvleV~t~DRPGLL~dIt~~La~~gv~I 245 (296)
++.|.++|.+. .+....+ .+ +.+++...+..++.|.++++. .++|+|+|.|.||||||++|+.+|+++|++|
T Consensus 742 ~~~l~~~l~~~-~~~~~~~----~~--~~~~~~~~~~~~~~V~~~~~~~~~~T~i~V~a~DrpGLLa~Ia~~L~~~~l~I 814 (856)
T PRK03059 742 EHELAERLAEQ-APLPEPS----KG--RLSRQVKHFPITPRVDLRPDERGQYYILSVSANDRPGLLYAIARVLAEHRVSV 814 (856)
T ss_pred HHHHHHHHcCC-CCcchhh----cc--cccccccCCCCCceEEEEEcCCCCEEEEEEEeCCcchHHHHHHHHHHHCCCeE
Confidence 99999999763 2111111 11 123455667788888877765 4699999999999999999999999999999
Q ss_pred EEEEEEecCCeeeeEEEEEeCCCCCChH-HHHHHHHHHHHHcC
Q 022480 246 ESAEIDTEGLVAKDKFHVSYGGAALNSS-LSQVLVNCLRYYLR 287 (296)
Q Consensus 246 ~~AkI~T~G~ra~D~F~V~~~g~~L~~~-~~~~L~~~L~~~l~ 287 (296)
+.|+|.|.|++|+|+|||+ +.++.++ .+++|+++|.++|.
T Consensus 815 ~~AkI~T~~~~v~DvF~V~--~~~~~~~~~~~~l~~~L~~~L~ 855 (856)
T PRK03059 815 HTAKINTLGERVEDTFLID--GSGLSDNRLQIQLETELLDALA 855 (856)
T ss_pred EEEEEeecCCEEEEEEEEc--CCCCCCHHHHHHHHHHHHHHhc
Confidence 9999999999999999994 4445444 78899999998874
No 9
>PRK03381 PII uridylyl-transferase; Provisional
Probab=99.95 E-value=4.9e-27 Score=244.92 Aligned_cols=186 Identities=21% Similarity=0.209 Sum_probs=153.3
Q ss_pred CCcEEEEeecCCCCeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEeCCeEEEEEEEeecCCCCCCCChHHHHHHH
Q 022480 88 PMPHVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIR 167 (296)
Q Consensus 88 ~~p~V~i~~~~~~~~t~V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~~~~~~d~F~V~~~~~g~~l~~~~~l~~L~ 167 (296)
..|.|.+..+. .+.++|+|+++||||||++||++|+.+||||++|+|+|.++.++|+|+|.++ +|.+. .+++|+
T Consensus 586 ~~~~v~~~~~~-~~~~~V~V~~~DrpGLfa~i~~vL~~~glnI~dA~i~t~dg~~ld~F~V~~~-~~~~~----~~~~l~ 659 (774)
T PRK03381 586 GGVHVEIAPAD-PHMVEVTVVAPDRRGLLSKAAGVLALHRLRVRSASVRSHDGVAVLEFVVSPR-FGSPP----DAALLR 659 (774)
T ss_pred CCCEEEEeeCC-CCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEeEEEecCCEEEEEEEEECC-CCCcc----hHHHHH
Confidence 56899999888 8999999999999999999999999999999999999965666899999986 77642 368899
Q ss_pred HHHHHhhcccCCCchhHhhhccccCccCCCccccccccceeeeccCCC-CcEEEEEEeCCCcchHHHHHHHHHhCCceEE
Q 022480 168 LTIINNLLKYHPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGP-KRSLLYIETADRPGLLVEIMKIIADVNVDVE 246 (296)
Q Consensus 168 ~~L~~~L~~~~~~~~~~La~~~~~~~~~~~r~~~~~~~~~V~v~~~~~-~~TvleV~t~DRPGLL~dIt~~La~~gv~I~ 246 (296)
+.|.++|.++ .+....+... .+...+++...+..++.|.++++.+ ++|+|+|.|.||||||++|+.+|+++|+||.
T Consensus 660 ~~L~~~L~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~t~i~V~a~DrpGLla~Ia~~L~~~~lnI~ 736 (774)
T PRK03381 660 QDLRRALDGD-LDVLARLAAR--EAAAAAVPVRRPAAPPRVLWLDGASPDATVLEVRAADRPGLLARLARALERAGVDVR 736 (774)
T ss_pred HHHHHHHcCC-Cchhhhhhcc--cccccccccccCCCCcEEEEEECCCCCeEEEEEEeCCchhHHHHHHHHHHHCCCeEE
Confidence 9999988762 2221222210 0000123445667788888877664 5899999999999999999999999999999
Q ss_pred EEEEEecCCeeeeEEEEEe-CCCCCChHHHHHHHHHHH
Q 022480 247 SAEIDTEGLVAKDKFHVSY-GGAALNSSLSQVLVNCLR 283 (296)
Q Consensus 247 ~AkI~T~G~ra~D~F~V~~-~g~~L~~~~~~~L~~~L~ 283 (296)
+|+|.|.|++++|+|||++ +|.+++++ +++|+++|.
T Consensus 737 ~AkI~T~g~~a~D~F~V~d~~g~~~~~~-~~~l~~~L~ 773 (774)
T PRK03381 737 WARVATLGADVVDVFYVTGAAGGPLADA-RAAVEQAVL 773 (774)
T ss_pred EEEEeecCCeEEEEEEEECCCCCcCchH-HHHHHHHhh
Confidence 9999999999999999998 89999987 788888875
No 10
>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.87 E-value=8.9e-22 Score=148.89 Aligned_cols=72 Identities=28% Similarity=0.472 Sum_probs=69.1
Q ss_pred cEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCeeeeEEEEEe-CCCCCChH-HHHHHHHHHHHHcCC
Q 022480 217 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSY-GGAALNSS-LSQVLVNCLRYYLRR 288 (296)
Q Consensus 217 ~TvleV~t~DRPGLL~dIt~~La~~gv~I~~AkI~T~G~ra~D~F~V~~-~g~~L~~~-~~~~L~~~L~~~l~~ 288 (296)
+|+|+|.|.|||||||+|+++|.++|++|++|+|+|+|++|+|+|||++ +|.||.++ ++++|+++|.++|.+
T Consensus 1 ~TvveV~~~DRpGLL~~i~~~l~~~~l~I~~A~I~T~gera~D~FyV~d~~g~kl~~~~~~~~l~~~L~~al~~ 74 (75)
T cd04897 1 YSVVTVQCRDRPKLLFDVVCTLTDMDYVVFHATIDTDGDDAHQEYYIRHKDGRTLSTEGERQRVIKCLEAAIER 74 (75)
T ss_pred CEEEEEEeCCcCcHHHHHHHHHHhCCeEEEEEEEeecCceEEEEEEEEcCCCCccCCHHHHHHHHHHHHHHHhc
Confidence 5899999999999999999999999999999999999999999999998 99999888 789999999999876
No 11
>cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.84 E-value=1.9e-20 Score=141.62 Aligned_cols=72 Identities=26% Similarity=0.400 Sum_probs=67.7
Q ss_pred EEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEE--ecCCeeeeEEEEEeCCCCCChH-HHHHHHHHHHHHcCCC
Q 022480 218 SLLYIETADRPGLLVEIMKIIADVNVDVESAEID--TEGLVAKDKFHVSYGGAALNSS-LSQVLVNCLRYYLRRP 289 (296)
Q Consensus 218 TvleV~t~DRPGLL~dIt~~La~~gv~I~~AkI~--T~G~ra~D~F~V~~~g~~L~~~-~~~~L~~~L~~~l~~~ 289 (296)
|+|+|.|.|||||||+|+++|+++|++|++|||+ |+|++++|+|||..+|+||.++ +++.|+++|+++|.+|
T Consensus 1 Tvlev~a~DRpGLL~~i~~~l~~~~l~i~~AkI~~~T~Gerv~D~Fyv~~~g~kl~d~~~~~~L~~~L~~~l~~~ 75 (75)
T cd04896 1 TLLQIRCVDQKGLLYDILRTSKDCNIQISYGRFSSKVKGYREVDLFIVQSDGKKIMDPKKQAALCARLREEMVCP 75 (75)
T ss_pred CEEEEEeCCcccHHHHHHHHHHHCCeEEEEEEEecCcccCEEEEEEEEeCCCCccCCHHHHHHHHHHHHHHhcCC
Confidence 6899999999999999999999999999999999 9999999999994489999876 7899999999999876
No 12
>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.83 E-value=2.2e-20 Score=140.32 Aligned_cols=68 Identities=26% Similarity=0.461 Sum_probs=63.4
Q ss_pred cEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCeeeeEEEEEe-CCCCCChH-HHHHHHHHHHH
Q 022480 217 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSY-GGAALNSS-LSQVLVNCLRY 284 (296)
Q Consensus 217 ~TvleV~t~DRPGLL~dIt~~La~~gv~I~~AkI~T~G~ra~D~F~V~~-~g~~L~~~-~~~~L~~~L~~ 284 (296)
+|+|+|.+.|||||||+|+++|+++|++|++|+|+|+|++++|+|||++ +|+||.++ .+++|+++|..
T Consensus 1 ~Tviev~a~DRpGLL~~i~~~l~~~gl~I~~AkIsT~Gerv~DvFyV~d~~g~kl~d~~~~~~l~~~L~~ 70 (72)
T cd04895 1 CTLVKVDSARKPGILLEAVQVLTDLDLCITKAYISSDGGWFMDVFHVTDQLGNKLTDDSLIAYIEKSLGT 70 (72)
T ss_pred CEEEEEEECCcCCHHHHHHHHHHHCCcEEEEEEEeecCCeEEEEEEEECCCCCCCCCHHHHHHHHHHhcc
Confidence 5899999999999999999999999999999999999999999999998 89999876 77888888753
No 13
>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.69 E-value=2.3e-16 Score=119.41 Aligned_cols=73 Identities=21% Similarity=0.347 Sum_probs=69.4
Q ss_pred eEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEeCCeEEEEEEEeecCCCCCCCChHHHHHHHHHHHHhhc
Q 022480 102 ATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLL 175 (296)
Q Consensus 102 ~t~V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~~~~~~d~F~V~~~~~g~~l~~~~~l~~L~~~L~~~L~ 175 (296)
+|+|+|.++||||||++|+++|+++|++|+.|+|.|.|+.+.|+|+|++. +|.++.++++.++|+++|..++.
T Consensus 1 ~TvveV~~~DRpGLL~~i~~~l~~~~l~I~~A~I~T~gera~D~FyV~d~-~g~kl~~~~~~~~l~~~L~~al~ 73 (75)
T cd04897 1 YSVVTVQCRDRPKLLFDVVCTLTDMDYVVFHATIDTDGDDAHQEYYIRHK-DGRTLSTEGERQRVIKCLEAAIE 73 (75)
T ss_pred CEEEEEEeCCcCcHHHHHHHHHHhCCeEEEEEEEeecCceEEEEEEEEcC-CCCccCCHHHHHHHHHHHHHHHh
Confidence 48999999999999999999999999999999999999999999999997 99999999999999999998774
No 14
>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.68 E-value=4e-16 Score=117.21 Aligned_cols=69 Identities=25% Similarity=0.424 Sum_probs=65.2
Q ss_pred eEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEeCCeEEEEEEEeecCCCCCCCChHHHHHHHHHHH
Q 022480 102 ATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTII 171 (296)
Q Consensus 102 ~t~V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~~~~~~d~F~V~~~~~g~~l~~~~~l~~L~~~L~ 171 (296)
+|+|+|.++||||||++|+++|+++|++|+.|+|.|.|+++.|+|+|++. +|+|+.++++++.|++.|.
T Consensus 1 ~Tviev~a~DRpGLL~~i~~~l~~~gl~I~~AkIsT~Gerv~DvFyV~d~-~g~kl~d~~~~~~l~~~L~ 69 (72)
T cd04895 1 CTLVKVDSARKPGILLEAVQVLTDLDLCITKAYISSDGGWFMDVFHVTDQ-LGNKLTDDSLIAYIEKSLG 69 (72)
T ss_pred CEEEEEEECCcCCHHHHHHHHHHHCCcEEEEEEEeecCCeEEEEEEEECC-CCCCCCCHHHHHHHHHHhc
Confidence 48999999999999999999999999999999999999999999999997 9999988888899988874
No 15
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Probab=99.67 E-value=9.7e-16 Score=135.42 Aligned_cols=138 Identities=12% Similarity=0.157 Sum_probs=103.7
Q ss_pred CCCeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEeCCeEEEEEEEeecCCCCCCCChHHHHHHHHHHHHhhcccC
Q 022480 99 NSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLKYH 178 (296)
Q Consensus 99 ~~~~t~V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~~~~~~d~F~V~~~~~g~~l~~~~~l~~L~~~L~~~L~~~~ 178 (296)
...+.+|++.|+||||+++.++++|+++||||.+.++...++.|.-++.|. +.+ ..+.+|+..|...-..
T Consensus 5 m~~~lviTviG~DrpGIVa~vs~~l~~~g~NI~ds~~t~lgg~Fa~i~lvs----~~~----~~~~~le~~L~~l~~~-- 74 (190)
T PRK11589 5 SQHYLVITALGADRPGIVNTITRHVSSCGCNIEDSRLAMLGEEFTFIMLLS----GSW----NAITLIESTLPLKGAE-- 74 (190)
T ss_pred cccEEEEEEEcCCCChHHHHHHHHHHHcCCCeeehhhHhhCCceEEEEEEe----CCh----hHHHHHHHHHHhhhhh--
Confidence 347789999999999999999999999999999999999999998777773 332 4667788777652211
Q ss_pred CCchhHhhhccccCccCCCccccccccceeeeccCCCCcEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCC--e
Q 022480 179 PESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGL--V 256 (296)
Q Consensus 179 ~~~~~~La~~~~~~~~~~~r~~~~~~~~~V~v~~~~~~~TvleV~t~DRPGLL~dIt~~La~~gv~I~~AkI~T~G~--r 256 (296)
.++...+ + +...+ . ....+..+.++|.+.|||||+++|+++|+++|+||..++..|++. .
T Consensus 75 ~~L~i~v-----~--~~~~~-----~------~~~~~~~~~v~v~G~DrPGIV~~vT~~la~~~iNI~~L~T~~~~a~~~ 136 (190)
T PRK11589 75 LDLLIVM-----K--RTTAR-----P------RPAMPATVWVQVEVADSPHLIERFTALFDSHHMNIAELVSRTQPAEGE 136 (190)
T ss_pred cCeEEEE-----E--ecccc-----c------cccCCceEEEEEEECCCCCHHHHHHHHHHHcCCChhheEEeeecCCCC
Confidence 1111000 0 00000 0 011112589999999999999999999999999999999999995 6
Q ss_pred eeeEEEEE
Q 022480 257 AKDKFHVS 264 (296)
Q Consensus 257 a~D~F~V~ 264 (296)
..++|.+.
T Consensus 137 ~~~lf~~~ 144 (190)
T PRK11589 137 RPAQLHIQ 144 (190)
T ss_pred CcccEEEE
Confidence 77788886
No 16
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=99.65 E-value=1.4e-15 Score=161.26 Aligned_cols=151 Identities=16% Similarity=0.227 Sum_probs=118.1
Q ss_pred eecccccCCCC-C--CCccceeeeeeecCCCccccc-ccccccccchhhhhccccccCCCC--CCCCCCC---CCCC-CC
Q 022480 20 LHRSKFLDSDF-A--APFSHDSFHLINFSRRFYEQG-ICLSRKNRNILFASVNGTNAVSPT--PLKSDQD---ADYI-PM 89 (296)
Q Consensus 20 ~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~---~~~~-~~ 89 (296)
.++-...+++| + .-+++|+|.|+|.+|.++... +.+.+ +...+.+++.++.. .....-. ...+ .+
T Consensus 727 ~~~lnI~~A~I~Tt~dg~alD~F~V~d~~g~~~~~~~~r~~~-----i~~~L~~~L~~~~~~~~~~~~~~~~~~~~~~~~ 801 (895)
T PRK00275 727 QLNLNIHDARIITSSSQFTLDTYIVLDDDGEPIGDNPARIEQ-----IREGLTEALRNPDDYPTIIQRRVPRQLKHFAFP 801 (895)
T ss_pred HCCCeEEEEEEEEcCCCeEEEEEEEeCCCCCCccchHHHHHH-----HHHHHHHHHcCCCccchhhhhhhhhhccCCCCC
Confidence 34444555554 2 267999999999999997543 44466 66666666654431 0111100 0122 56
Q ss_pred cEEEEeecCCCCeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEeCCeEEEEEEEeecCCCCCCCChHHHHHHHHH
Q 022480 90 PHVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLT 169 (296)
Q Consensus 90 p~V~i~~~~~~~~t~V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~~~~~~d~F~V~~~~~g~~l~~~~~l~~L~~~ 169 (296)
|.|.++++.+.++|+|+|+++||||||++|+++|+.+|+||++|+|+|.++.++|+|+|++. +|.++.+++++++|++.
T Consensus 802 ~~V~i~~~~~~~~T~i~V~a~DrpGLLa~I~~~L~~~~l~I~~AkI~T~g~~v~D~F~V~d~-~g~~l~~~~~~~~l~~~ 880 (895)
T PRK00275 802 TQVTISNDAQRPVTVLEIIAPDRPGLLARIGRIFLEFDLSLQNAKIATLGERVEDVFFITDA-DNQPLSDPQLCSRLQDA 880 (895)
T ss_pred CEEEEEECCCCCeEEEEEEECCCCCHHHHHHHHHHHCCCEEEEeEEEecCCEEEEEEEEECC-CCCCCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998888999999996 89888887899999999
Q ss_pred HHHhhcc
Q 022480 170 IINNLLK 176 (296)
Q Consensus 170 L~~~L~~ 176 (296)
|.++|.+
T Consensus 881 L~~~L~~ 887 (895)
T PRK00275 881 ICEQLDA 887 (895)
T ss_pred HHHHHhc
Confidence 9998865
No 17
>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.63 E-value=4.1e-15 Score=112.00 Aligned_cols=72 Identities=25% Similarity=0.300 Sum_probs=66.3
Q ss_pred EEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEeCCeEEEEEEEeecCC-CCCCCChHHHHHHHHHHHHhhc
Q 022480 103 TIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDT-GRKVEDPDLLERIRLTIINNLL 175 (296)
Q Consensus 103 t~V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~~~~~~d~F~V~~~~~-g~~l~~~~~l~~L~~~L~~~L~ 175 (296)
|+|+|+++||||||++|+++|+++||||++|+++|.++.++|+|+|.+. + |.++.+++++++|++.|.++|.
T Consensus 1 t~~~v~~~Dr~gLl~~i~~~l~~~~lnI~~A~i~t~~~~~~d~f~V~d~-~~~~~~~~~~~~~~i~~~L~~~l~ 73 (74)
T cd04925 1 TAIELTGTDRPGLLSEVFAVLADLHCNVVEARAWTHNGRLACVIYVRDE-ETGAPIDDPIRLASIEDRLDNVLR 73 (74)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHCCCcEEEEEEEEECCEEEEEEEEEcC-cCCCCCCCHHHHHHHHHHHHHHhc
Confidence 5799999999999999999999999999999999998888999999986 6 7777788899999999988764
No 18
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=99.62 E-value=3.3e-15 Score=157.91 Aligned_cols=148 Identities=15% Similarity=0.219 Sum_probs=113.4
Q ss_pred eeecccccCCCCC---CCccceeeeeeecCCCcccccccccccccchhhhhccccccCCCCCCCCC-C--CCCCC-CCcE
Q 022480 19 ALHRSKFLDSDFA---APFSHDSFHLINFSRRFYEQGICLSRKNRNILFASVNGTNAVSPTPLKSD-Q--DADYI-PMPH 91 (296)
Q Consensus 19 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~-~~p~ 91 (296)
+.++-...+++|. .-+++|+|.|.|.+|.++. .+.+.+ |...++.++.+........ . ....+ .+|.
T Consensus 699 ~~~~L~I~~A~I~T~~~g~alD~F~V~d~~g~~~~-~~~~~~-----l~~~L~~aL~~~~~~~~~~~~~~~~~~~~~~~~ 772 (854)
T PRK01759 699 GAKKLSIHDAQIITSQDGYVLDSFIVTELNGKLLE-FDRRRQ-----LEQALTKALNTNKLKKLNLEENHKLQHFHVKTE 772 (854)
T ss_pred HHCCCeEEEEEEEEccCCEEEEEEEEeCCCCCCCC-HHHHHH-----HHHHHHHHHcCCCCcchhccccccccCCCCCCE
Confidence 3344444455542 3689999999999999884 334455 6666666665443211100 0 01122 6789
Q ss_pred EEEeecCCCCeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEeCCeEEEEEEEeecCCCCCCCChHHHHHHHHHHH
Q 022480 92 VLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTII 171 (296)
Q Consensus 92 V~i~~~~~~~~t~V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~~~~~~d~F~V~~~~~g~~l~~~~~l~~L~~~L~ 171 (296)
|.|+++.+..+|+|+|.++||||||++|+++|.++|++|+.|+|.|.|+.+.|+|+|++. +|.+++++++ ++|++.|.
T Consensus 773 V~~dn~~s~~~T~iev~a~DrpGLL~~I~~~l~~~~l~i~~AkI~T~gerv~D~Fyv~~~-~g~~l~~~~~-~~l~~~L~ 850 (854)
T PRK01759 773 VRFLNEEKQEQTEMELFALDRAGLLAQVSQVFSELNLNLLNAKITTIGEKAEDFFILTNQ-QGQALDEEER-KALKSRLL 850 (854)
T ss_pred EEEccCCCCCeEEEEEEeCCchHHHHHHHHHHHHCCCEEEEEEEcccCceEEEEEEEECC-CCCcCChHHH-HHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999996 8999877555 88998887
Q ss_pred Hhh
Q 022480 172 NNL 174 (296)
Q Consensus 172 ~~L 174 (296)
++|
T Consensus 851 ~~l 853 (854)
T PRK01759 851 SNL 853 (854)
T ss_pred HHh
Confidence 765
No 19
>PRK05007 PII uridylyl-transferase; Provisional
Probab=99.62 E-value=4.6e-15 Score=157.31 Aligned_cols=136 Identities=14% Similarity=0.148 Sum_probs=107.9
Q ss_pred CccceeeeeeecCCCcccccccccccccchhhhhccccccCCCCCC-CCCC---CCCCC-CCcEEEEeecCCCCeEEEEE
Q 022480 33 PFSHDSFHLINFSRRFYEQGICLSRKNRNILFASVNGTNAVSPTPL-KSDQ---DADYI-PMPHVLIDQDSNSDATIVQL 107 (296)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~~~~-~~p~V~i~~~~~~~~t~V~V 107 (296)
-+++|+|.|+|.+|.++. .+.+.+ +...+.+++.+..... ..+. ....+ .+|.|.|+++.++.+|+|+|
T Consensus 740 g~alD~F~V~d~~g~~~~-~~~~~~-----I~~~L~~aL~~~~~~~~~~~~~~~~~~~~~~~~~V~~d~~~s~~~TvlEV 813 (884)
T PRK05007 740 GMAMDTFIVLEPDGSPLS-QDRHQV-----IRKALEQALTQSSPQPPKPRRLPAKLRHFNVPTEVSFLPTHTDRRSYMEL 813 (884)
T ss_pred CeEEEEEEEECCCCCCCC-HHHHHH-----HHHHHHHHHcCCCCCcccccccccccCCCCCCCEEEEccCCCCCeEEEEE
Confidence 469999999999999873 344455 5555555554432100 0000 01222 67899999999999999999
Q ss_pred EeCCCccHHHHHHHHHHHCCceEEEEEEEEeCCeEEEEEEEeecCCCCCCCChHHHHHHHHHHHHhhcc
Q 022480 108 SFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLK 176 (296)
Q Consensus 108 ~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~~~~~~d~F~V~~~~~g~~l~~~~~l~~L~~~L~~~L~~ 176 (296)
.++||||||++|+++|.++|++|+.|+|.|.|+.+.|+|+|++. +|.+++ +++.+.|++.|.++|..
T Consensus 814 ~a~DRpGLL~~I~~~l~~~~l~I~~AkI~T~gera~DvFyV~~~-~g~~l~-~~~~~~l~~~L~~~l~~ 880 (884)
T PRK05007 814 IALDQPGLLARVGKIFADLGISLHGARITTIGERVEDLFILATA-DRRALN-EELQQELRQRLTEALNP 880 (884)
T ss_pred EeCCchHHHHHHHHHHHHCCcEEEEEEEeccCceEEEEEEEEcC-CCCcCC-HHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999996 898887 67889999999887753
No 20
>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.61 E-value=5.5e-15 Score=110.74 Aligned_cols=71 Identities=25% Similarity=0.343 Sum_probs=63.5
Q ss_pred EEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEeCCe-EEEEEEEeecCCCCCCCChHHHHHHHHHHHHhh
Q 022480 103 TIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSV-KQTKFFITRLDTGRKVEDPDLLERIRLTIINNL 174 (296)
Q Consensus 103 t~V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~~~~-~~d~F~V~~~~~g~~l~~~~~l~~L~~~L~~~L 174 (296)
++|+|+++||||||++++++|+.+|+||++|+|+|++++ .+|+|+|++. +|.++.+++++++|++.|.++|
T Consensus 2 ~~i~v~~~Dr~gLl~~i~~~l~~~~l~I~~A~i~T~~~~~v~D~F~v~~~-~~~~~~~~~~~~~l~~~L~~~l 73 (73)
T cd04900 2 TEVFIYTPDRPGLFARIAGALDQLGLNILDARIFTTRDGYALDTFVVLDP-DGEPIGERERLARIREALEDAL 73 (73)
T ss_pred EEEEEEecCCCCHHHHHHHHHHHCCCCeEEeEEEEeCCCeEEEEEEEECC-CCCCCChHHHHHHHHHHHHhhC
Confidence 689999999999999999999999999999999999755 4799999986 8887777789999999987653
No 21
>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.61 E-value=6.4e-15 Score=110.94 Aligned_cols=70 Identities=26% Similarity=0.321 Sum_probs=65.0
Q ss_pred EEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCeeeeEEEEEe-C-CCCCChH-HHHHHHHHHHHHcC
Q 022480 218 SLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSY-G-GAALNSS-LSQVLVNCLRYYLR 287 (296)
Q Consensus 218 TvleV~t~DRPGLL~dIt~~La~~gv~I~~AkI~T~G~ra~D~F~V~~-~-g~~L~~~-~~~~L~~~L~~~l~ 287 (296)
|+|+|.++||||||++|+++|+++|+||..|++.|.|+++.|+|+|++ + |.++.++ .+++|++.|.++|.
T Consensus 1 t~~~v~~~Dr~gLl~~i~~~l~~~~lnI~~A~i~t~~~~~~d~f~V~d~~~~~~~~~~~~~~~i~~~L~~~l~ 73 (74)
T cd04925 1 TAIELTGTDRPGLLSEVFAVLADLHCNVVEARAWTHNGRLACVIYVRDEETGAPIDDPIRLASIEDRLDNVLR 73 (74)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHCCCcEEEEEEEEECCEEEEEEEEEcCcCCCCCCCHHHHHHHHHHHHHHhc
Confidence 689999999999999999999999999999999999999999999997 5 8888775 77999999998875
No 22
>cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.60 E-value=9e-15 Score=110.69 Aligned_cols=71 Identities=21% Similarity=0.409 Sum_probs=66.3
Q ss_pred EEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEE--EeCCeEEEEEEEeecCCCCCCCChHHHHHHHHHHHHhhc
Q 022480 103 TIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVN--TEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLL 175 (296)
Q Consensus 103 t~V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~--T~~~~~~d~F~V~~~~~g~~l~~~~~l~~L~~~L~~~L~ 175 (296)
|+++|.++||||||++|+++|.++|++|+.|+|. |.|+..+|+|+| +. +|.++.++++++.|++.|.++|.
T Consensus 1 Tvlev~a~DRpGLL~~i~~~l~~~~l~i~~AkI~~~T~Gerv~D~Fyv-~~-~g~kl~d~~~~~~L~~~L~~~l~ 73 (75)
T cd04896 1 TLLQIRCVDQKGLLYDILRTSKDCNIQISYGRFSSKVKGYREVDLFIV-QS-DGKKIMDPKKQAALCARLREEMV 73 (75)
T ss_pred CEEEEEeCCcccHHHHHHHHHHHCCeEEEEEEEecCcccCEEEEEEEE-eC-CCCccCCHHHHHHHHHHHHHHhc
Confidence 5799999999999999999999999999999999 999999999999 64 78889888999999999998775
No 23
>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.59 E-value=1.3e-14 Score=109.98 Aligned_cols=72 Identities=19% Similarity=0.272 Sum_probs=63.7
Q ss_pred EEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEe-cCCeeeeEEEEEe-CCCCCChHHHHHHHHHHHHHcCCCC
Q 022480 219 LLYIETADRPGLLVEIMKIIADVNVDVESAEIDT-EGLVAKDKFHVSY-GGAALNSSLSQVLVNCLRYYLRRPE 290 (296)
Q Consensus 219 vleV~t~DRPGLL~dIt~~La~~gv~I~~AkI~T-~G~ra~D~F~V~~-~g~~L~~~~~~~L~~~L~~~l~~~~ 290 (296)
+++|.+.||||||++|+++|+++|++|.+|+|.| .|+++.|+|+|++ +|....++.+++|+++|+++|.+.+
T Consensus 2 ~~ei~~~Dr~gLfa~i~~~l~~~~l~I~~A~I~Tt~~~~v~D~F~V~d~~~~~~~~~~~~~l~~~L~~~L~~~~ 75 (76)
T cd04927 2 LLKLFCSDRKGLLHDVTEVLYELELTIERVKVSTTPDGRVLDLFFITDARELLHTKKRREETYDYLRAVLGDSM 75 (76)
T ss_pred EEEEEECCCCCHHHHHHHHHHHCCCeEEEEEEEECCCCEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHchhc
Confidence 6899999999999999999999999999999996 8999999999998 5553334478899999999998754
No 24
>PRK04374 PII uridylyl-transferase; Provisional
Probab=99.58 E-value=2.6e-14 Score=151.11 Aligned_cols=147 Identities=18% Similarity=0.142 Sum_probs=111.6
Q ss_pred eeecccccCCCCC---CCccceeeeeeecCCCcccccccccccccchhhhhccccccCCCC---CCCCCC--CCCCC-CC
Q 022480 19 ALHRSKFLDSDFA---APFSHDSFHLINFSRRFYEQGICLSRKNRNILFASVNGTNAVSPT---PLKSDQ--DADYI-PM 89 (296)
Q Consensus 19 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~--~~~~~-~~ 89 (296)
+.++-...++++- .-++||+|.|+|.+|.+. +.+.+ +...+++++.+... ..+.+. ....+ .+
T Consensus 712 ~~~~lnI~~A~i~t~~~g~~ld~f~V~~~~~~~~---~~~~~-----i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 783 (869)
T PRK04374 712 DRKGYGIHRARVLDAPHDAIFDVFEVLPQDTYAD---GDPQR-----LAAALRQVLAGDLQKVRPARRAVPRQLRHFRFA 783 (869)
T ss_pred HHCCCeEEEEEEEEcCCCEEEEEEEEeCCCCCCh---HHHHH-----HHHHHHHHHcCCCCccccccccCcccccCCCCC
Confidence 3444444555443 368999999999998852 22444 66777776655321 011100 01223 66
Q ss_pred cEEEEeecCCCCeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEeCCeEEEEEEEeecCCCCCCCChHHHHHHHHH
Q 022480 90 PHVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLT 169 (296)
Q Consensus 90 p~V~i~~~~~~~~t~V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~~~~~~d~F~V~~~~~g~~l~~~~~l~~L~~~ 169 (296)
|.|.++++.+.++|+|+|+++||||||++|+++|+.+|+||++|+|+|.++.++|+|+|++. +|.++.++++ +.|++.
T Consensus 784 ~~V~~~~~~~~~~t~leI~a~DrpGLLa~Ia~~l~~~~l~I~~AkI~T~g~~a~D~F~V~d~-~g~~~~~~~~-~~l~~~ 861 (869)
T PRK04374 784 PRVEFSESAGGRRTRISLVAPDRPGLLADVAHVLRMQHLRVHDARIATFGERAEDQFQITDE-HDRPLSESAR-QALRDA 861 (869)
T ss_pred CeEEEeecCCCCeEEEEEEeCCcCcHHHHHHHHHHHCCCeEEEeEEEecCCEEEEEEEEECC-CCCcCChHHH-HHHHHH
Confidence 89999999999999999999999999999999999999999999999998888999999996 8888766555 899999
Q ss_pred HHHhhc
Q 022480 170 IINNLL 175 (296)
Q Consensus 170 L~~~L~ 175 (296)
|.+.|.
T Consensus 862 L~~~l~ 867 (869)
T PRK04374 862 LCACLD 867 (869)
T ss_pred HHHHhc
Confidence 888763
No 25
>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.57 E-value=2.8e-14 Score=106.88 Aligned_cols=69 Identities=26% Similarity=0.334 Sum_probs=62.4
Q ss_pred EEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEec-CCeeeeEEEEEe-CCCCCChH-HHHHHHHHHHHHc
Q 022480 218 SLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTE-GLVAKDKFHVSY-GGAALNSS-LSQVLVNCLRYYL 286 (296)
Q Consensus 218 TvleV~t~DRPGLL~dIt~~La~~gv~I~~AkI~T~-G~ra~D~F~V~~-~g~~L~~~-~~~~L~~~L~~~l 286 (296)
+.|+|.+.||||||++|+.+|+.+|+||.+|+|.|. ++++.|+|+|++ +|.++.++ .+++|++.|+++|
T Consensus 2 ~~i~v~~~Dr~gLl~~i~~~l~~~~l~I~~A~i~T~~~~~v~D~F~v~~~~~~~~~~~~~~~~l~~~L~~~l 73 (73)
T cd04900 2 TEVFIYTPDRPGLFARIAGALDQLGLNILDARIFTTRDGYALDTFVVLDPDGEPIGERERLARIREALEDAL 73 (73)
T ss_pred EEEEEEecCCCCHHHHHHHHHHHCCCCeEEeEEEEeCCCeEEEEEEEECCCCCCCChHHHHHHHHHHHHhhC
Confidence 689999999999999999999999999999999887 599999999997 88888655 7788999988764
No 26
>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.55 E-value=6.8e-14 Score=106.04 Aligned_cols=71 Identities=24% Similarity=0.219 Sum_probs=62.3
Q ss_pred EEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEeCC-eEEEEEEEeecCCCCCCCChHHHHHHHHHHHHhhcc
Q 022480 104 IVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGS-VKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLK 176 (296)
Q Consensus 104 ~V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~~~-~~~d~F~V~~~~~g~~l~~~~~l~~L~~~L~~~L~~ 176 (296)
+++|+++||||||++++++|+.+|+||++|+|+|+.+ ..+|+|+|++. +|. ..+++++++|++.|.++|.+
T Consensus 2 ~~ei~~~Dr~gLfa~i~~~l~~~~l~I~~A~I~Tt~~~~v~D~F~V~d~-~~~-~~~~~~~~~l~~~L~~~L~~ 73 (76)
T cd04927 2 LLKLFCSDRKGLLHDVTEVLYELELTIERVKVSTTPDGRVLDLFFITDA-REL-LHTKKRREETYDYLRAVLGD 73 (76)
T ss_pred EEEEEECCCCCHHHHHHHHHHHCCCeEEEEEEEECCCCEEEEEEEEeCC-CCC-CCCHHHHHHHHHHHHHHHch
Confidence 6899999999999999999999999999999998554 55799999986 665 55678999999999998864
No 27
>PRK03059 PII uridylyl-transferase; Provisional
Probab=99.54 E-value=4e-14 Score=149.70 Aligned_cols=156 Identities=17% Similarity=0.205 Sum_probs=114.4
Q ss_pred cccccccCCcceeecccccCCCC---CCCccceeeeeeecCCCcccccccccccccchhhhhccccccCCCC--CCCCCC
Q 022480 8 LFSSTASSSSTALHRSKFLDSDF---AAPFSHDSFHLINFSRRFYEQGICLSRKNRNILFASVNGTNAVSPT--PLKSDQ 82 (296)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 82 (296)
||+.++. .++.++-...++++ ..-++||+|.|+|..|. +...+.+.+ +...+++++.+... ....+.
T Consensus 691 LFa~i~g--~l~~~~l~I~~A~i~t~~~g~~ld~f~V~~~~~~-~~~~~~~~~-----i~~~l~~~l~~~~~~~~~~~~~ 762 (856)
T PRK03059 691 LFARICG--YFDRAGFSILDARVHTTRHGYALDTFQVLDPEED-VHYRDIINL-----VEHELAERLAEQAPLPEPSKGR 762 (856)
T ss_pred HHHHHHH--HHHHCCCceeeeEEEEcCCCeEEEEEEEeCCCCC-CChHHHHHH-----HHHHHHHHHcCCCCcchhhccc
Confidence 4444443 34555556666665 34679999999998887 333334455 77777776655431 011111
Q ss_pred CC---CCC-CCcEEEEeecCCCCeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEeCCeEEEEEEEeecCCCCCCC
Q 022480 83 DA---DYI-PMPHVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVE 158 (296)
Q Consensus 83 ~~---~~~-~~p~V~i~~~~~~~~t~V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~~~~~~d~F~V~~~~~g~~l~ 158 (296)
.+ ..+ .+|.|.++++.+.++|+|+|+++||||||++||++|+.+|+||++|+|+|.++.++|+|+|... +..
T Consensus 763 ~~~~~~~~~~~~~V~~~~~~~~~~T~i~V~a~DrpGLLa~Ia~~L~~~~l~I~~AkI~T~~~~v~DvF~V~~~----~~~ 838 (856)
T PRK03059 763 LSRQVKHFPITPRVDLRPDERGQYYILSVSANDRPGLLYAIARVLAEHRVSVHTAKINTLGERVEDTFLIDGS----GLS 838 (856)
T ss_pred ccccccCCCCCceEEEEEcCCCCEEEEEEEeCCcchHHHHHHHHHHHCCCeEEEEEEeecCCEEEEEEEEcCC----CCC
Confidence 01 223 5688999999999999999999999999999999999999999999999998888999999542 245
Q ss_pred ChHHHHHHHHHHHHhhc
Q 022480 159 DPDLLERIRLTIINNLL 175 (296)
Q Consensus 159 ~~~~l~~L~~~L~~~L~ 175 (296)
+++++++|++.|.++|.
T Consensus 839 ~~~~~~~l~~~L~~~L~ 855 (856)
T PRK03059 839 DNRLQIQLETELLDALA 855 (856)
T ss_pred CHHHHHHHHHHHHHHhc
Confidence 67899999999988663
No 28
>PRK05092 PII uridylyl-transferase; Provisional
Probab=99.54 E-value=1e-13 Score=147.89 Aligned_cols=138 Identities=25% Similarity=0.330 Sum_probs=111.4
Q ss_pred CccceeeeeeecCCCcccccccccccccchhhhhccccccCCCCC---C----CCCCCCCCC-CCcEEEEeecCCCCeEE
Q 022480 33 PFSHDSFHLINFSRRFYEQGICLSRKNRNILFASVNGTNAVSPTP---L----KSDQDADYI-PMPHVLIDQDSNSDATI 104 (296)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~----~~~~~~~~~-~~p~V~i~~~~~~~~t~ 104 (296)
=+++|+|.|.|.+|.++...+.+.+ |...+..+..+.... . .+......+ .+|.|.|+++.+.++|+
T Consensus 771 g~alD~F~V~~~~g~~~~~~~~~~~-----l~~~L~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~~~V~~~~~~s~~~t~ 845 (931)
T PRK05092 771 GRALDTFWIQDAFGRDEDEPRRLAR-----LAKAIEDALSGEVRLPEALAKRTKPKKRARAFHVPPRVTIDNEASNRFTV 845 (931)
T ss_pred CeEEEEEEEECCCCCCCCCHHHHHH-----HHHHHHHHHcCCCCCccccccccCccccccCCCCCCEEEEeeCCCCCeEE
Confidence 4799999999999988655555566 666666655433210 0 010011222 67999999999999999
Q ss_pred EEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEeCCeEEEEEEEeecCCCCCCCChHHHHHHHHHHHHhhcc
Q 022480 105 VQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLK 176 (296)
Q Consensus 105 V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~~~~~~d~F~V~~~~~g~~l~~~~~l~~L~~~L~~~L~~ 176 (296)
|.|+++||||||++|+++|+++|+||+.|+|.|.++...|+|+|++. +|.++.++++++.|++.|.++|.+
T Consensus 846 i~I~~~DrpGLl~~I~~~l~~~gl~I~~A~I~T~~~~~~D~F~v~d~-~g~~i~~~~~~~~l~~~L~~~L~~ 916 (931)
T PRK05092 846 IEVNGRDRPGLLYDLTRALSDLNLNIASAHIATYGERAVDVFYVTDL-FGLKITNEARQAAIRRALLAALAE 916 (931)
T ss_pred EEEEECCcCcHHHHHHHHHHHCCceEEEEEEEEcCCEEEEEEEEeCC-CCCcCCCHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999998888999999996 899898888999999999998865
No 29
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
Probab=99.50 E-value=1.6e-13 Score=145.36 Aligned_cols=136 Identities=20% Similarity=0.239 Sum_probs=107.5
Q ss_pred CCccceeeeeeecCCCcccccccccccccchhhhhccccccCCCC----CCCCC---CCCCCC-CCcEEEEeecCCCCeE
Q 022480 32 APFSHDSFHLINFSRRFYEQGICLSRKNRNILFASVNGTNAVSPT----PLKSD---QDADYI-PMPHVLIDQDSNSDAT 103 (296)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~---~~~~~~-~~p~V~i~~~~~~~~t 103 (296)
.-+++|+|.|.|.+|.+....+.+.+ +...+..++.+... ....+ .....+ .+|.|.|+++.++++|
T Consensus 706 ~g~~lD~F~V~~~~g~~~~~~~~~~~-----i~~~L~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~d~~~s~~~t 780 (850)
T TIGR01693 706 DGVALDTFVVQDLFGSPPAAERVFQE-----LLQGLVDVLAGLAKDPDTISARRARRRRLQHFAVPPRVTILNTASRKAT 780 (850)
T ss_pred CCEEEEEEEEECCCCCCCCcHHHHHH-----HHHHHHHHHcCCCccccccccccCCcccccCCCCCCeEEEccCCCCCeE
Confidence 47899999999999998765554555 55555555544321 01100 011223 6789999999999999
Q ss_pred EEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEeCCeEEEEEEEeecCCCCCCCChHHHHHHHHHHHHhh
Q 022480 104 IVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNL 174 (296)
Q Consensus 104 ~V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~~~~~~d~F~V~~~~~g~~l~~~~~l~~L~~~L~~~L 174 (296)
+|+|.+.|||||+++|+++|.++|+||+.|+|.|.++...|+|+|++. .|.++.+ ++++.|++.|.++|
T Consensus 781 ~~~v~~~DrpGll~~i~~~l~~~~~~i~~a~i~t~~~~~~d~F~v~~~-~g~~~~~-~~~~~l~~~L~~~l 849 (850)
T TIGR01693 781 IMEVRALDRPGLLARVGRTLEELGLSIQSAKITTFGEKAEDVFYVTDL-FGLKLTD-EEEQRLLEVLAASV 849 (850)
T ss_pred EEEEEECCccHHHHHHHHHHHHCCCeEEEEEEEecCccceeEEEEECC-CCCCCCH-HHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999888999999996 8888876 78888998887755
No 30
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.48 E-value=2.6e-13 Score=139.24 Aligned_cols=149 Identities=16% Similarity=0.220 Sum_probs=107.7
Q ss_pred CCcceeecccccCCCCCCCccceeeeeeecCCCcccccccc-cccccchhhhhccccccCCCCC----CCCCCCCCCC-C
Q 022480 15 SSSTALHRSKFLDSDFAAPFSHDSFHLINFSRRFYEQGICL-SRKNRNILFASVNGTNAVSPTP----LKSDQDADYI-P 88 (296)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~-~ 88 (296)
+.-+.|+..+++-+ ..=+++|+|-|.|.+|.+++ +.+ .. +...+..++..+... .+......++ .
T Consensus 707 ~~g~~i~dAqi~tt--~dG~alDtfiv~~~~g~~~~--~dr~~~-----~~~~l~~~l~s~~~~~~~~~r~~r~~~~f~i 777 (867)
T COG2844 707 RRGLSIVDAQIFTT--RDGYALDTFIVLEPDGFPVE--EDRRAA-----LRGELIEALLSGKAQPPRRRRIPRKLRHFPI 777 (867)
T ss_pred cCCCceeeeEEEEc--cCCceeeeEEEecCCCCccc--hhHHHH-----HHHHHHHHHhcCCCCCccccccCcccceecc
Confidence 34444544443321 23579999999999999999 333 33 344444444444432 1111111335 6
Q ss_pred CcEEEEeecCCCCeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEeCCeEEEEEEEeecCCCCCCCChHHHHHHHH
Q 022480 89 MPHVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRL 168 (296)
Q Consensus 89 ~p~V~i~~~~~~~~t~V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~~~~~~d~F~V~~~~~g~~l~~~~~l~~L~~ 168 (296)
+|.|.|.++.+..+++++|.+.||||||+.++++|+++|++|+.|+|.|.|+.+.|+|+|++. .|.++.+ +..+.+.+
T Consensus 778 ~p~v~i~~t~~~~~t~lEv~alDRpGLLa~v~~v~~dl~l~i~~AkItT~GErveD~F~vt~~-~~~~l~~-~~~q~l~~ 855 (867)
T COG2844 778 PPRVTILPTASNDKTVLEVRALDRPGLLAALAGVFADLGLSLHSAKITTFGERVEDVFIVTDA-DGQALNA-ELRQSLLQ 855 (867)
T ss_pred CCceeeccccCCCceEEEEEeCCcccHHHHHHHHHHhcccceeeeeeccccccceeEEEEecc-ccccCCH-HHHHHHHH
Confidence 699999999999999999999999999999999999999999999999999999999999997 8888854 43344444
Q ss_pred HHHHhh
Q 022480 169 TIINNL 174 (296)
Q Consensus 169 ~L~~~L 174 (296)
.|.+++
T Consensus 856 ~ll~al 861 (867)
T COG2844 856 RLLEAL 861 (867)
T ss_pred HHHHHh
Confidence 444434
No 31
>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism]
Probab=99.45 E-value=3.1e-13 Score=116.11 Aligned_cols=158 Identities=16% Similarity=0.201 Sum_probs=111.7
Q ss_pred CCeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEeCCeEEEEEEEeecCCCCCCCChHHHHHHHHHHHHhhcccCC
Q 022480 100 SDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLKYHP 179 (296)
Q Consensus 100 ~~~t~V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~~~~~~d~F~V~~~~~g~~l~~~~~l~~L~~~L~~~L~~~~~ 179 (296)
+.+++|+++|.||||+...++++..++||||.++++...|+.+.-+..| .|.| +...+|+..|.. +.. +.
T Consensus 3 ~~~LvItavg~d~pgl~~~lar~v~s~Gcn~leSRla~~g~~~a~i~li----sgs~----dav~~le~~l~~-l~~-~~ 72 (176)
T COG2716 3 EHYLVITAVGADRPGLVNTLARAVASSGCNWLESRLAMLGEEFAGIMLI----SGSW----DAVTLLEATLPL-LGA-EL 72 (176)
T ss_pred ccEEEEEEecCCCcHHHHHHHHHHHhcCCcchHHHHHHhhcceeEEEEE----eeCH----HHHHHHHHHhhc-ccc-cC
Confidence 4568999999999999999999999999999999999999988743433 4654 777888888765 433 12
Q ss_pred CchhHhhhccccCccCCCccccccccceeeeccCCCCcEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecC--Cee
Q 022480 180 ESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEG--LVA 257 (296)
Q Consensus 180 ~~~~~La~~~~~~~~~~~r~~~~~~~~~V~v~~~~~~~TvleV~t~DRPGLL~dIt~~La~~gv~I~~AkI~T~G--~ra 257 (296)
++. +.+ .+- ..++ .......+.++|.+.|||||+.+|++.|.++|++|+++...|+. +.-
T Consensus 73 ~L~--v~m--------~rt------~~~~--~~a~~~~v~v~v~a~DrpgIv~~~T~lf~~~~inie~L~~~~~~a~~s~ 134 (176)
T COG2716 73 DLL--VVM--------KRT------GAHP--TPANPAPVWVYVDANDRPGIVEEFTALFDGHGINIENLVSRTYPAPGSS 134 (176)
T ss_pred CeE--EEE--------eec------CCCc--cCCCCceEEEEEEecCCccHHHHHHHHHHhcCCchhhceeeeeecCCCC
Confidence 211 110 000 0000 12223579999999999999999999999999999999999975 446
Q ss_pred eeEEEEEe-CCCCCChHHHHHHHHHHHHHc
Q 022480 258 KDKFHVSY-GGAALNSSLSQVLVNCLRYYL 286 (296)
Q Consensus 258 ~D~F~V~~-~g~~L~~~~~~~L~~~L~~~l 286 (296)
...|++.= -+-|.+- ....|++++.+.+
T Consensus 135 ~~lfha~it~~lPa~~-~i~~l~~~f~al~ 163 (176)
T COG2716 135 APLFHAQITARLPANL-SISALRDAFEALC 163 (176)
T ss_pred ccceehhhhccCCCcC-cHHHHHHHHHHHH
Confidence 67899863 3333332 1234444444433
No 32
>PRK03381 PII uridylyl-transferase; Provisional
Probab=99.44 E-value=8.6e-13 Score=138.39 Aligned_cols=127 Identities=19% Similarity=0.173 Sum_probs=97.4
Q ss_pred CCccceeeeeeecCCCcccccccccccccchhhhhccccccCCCC---C--CCCC----CCCCCC-CCcEEEEeecCCCC
Q 022480 32 APFSHDSFHLINFSRRFYEQGICLSRKNRNILFASVNGTNAVSPT---P--LKSD----QDADYI-PMPHVLIDQDSNSD 101 (296)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--~~~~----~~~~~~-~~p~V~i~~~~~~~ 101 (296)
.-+++|+|.|.+.+|.+.. +.+ +..+++++..++.. . .... .....+ .+|.|.++++.+.+
T Consensus 636 dg~~ld~F~V~~~~~~~~~----~~~-----l~~~L~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 706 (774)
T PRK03381 636 DGVAVLEFVVSPRFGSPPD----AAL-----LRQDLRRALDGDLDVLARLAAREAAAAAVPVRRPAAPPRVLWLDGASPD 706 (774)
T ss_pred CCEEEEEEEEECCCCCcch----HHH-----HHHHHHHHHcCCCchhhhhhcccccccccccccCCCCcEEEEEECCCCC
Confidence 3789999999999887654 234 55555555554311 0 0000 011223 56788999999999
Q ss_pred eEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEeCCeEEEEEEEeecCCCCCCCChHHHHHHHHHH
Q 022480 102 ATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTI 170 (296)
Q Consensus 102 ~t~V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~~~~~~d~F~V~~~~~g~~l~~~~~l~~L~~~L 170 (296)
+++|+|+++||||||++|+++|+.+|+||++|+|+|.++.++|+|+|++. +|.+++++ ++.|++.|
T Consensus 707 ~t~i~V~a~DrpGLla~Ia~~L~~~~lnI~~AkI~T~g~~a~D~F~V~d~-~g~~~~~~--~~~l~~~L 772 (774)
T PRK03381 707 ATVLEVRAADRPGLLARLARALERAGVDVRWARVATLGADVVDVFYVTGA-AGGPLADA--RAAVEQAV 772 (774)
T ss_pred eEEEEEEeCCchhHHHHHHHHHHHCCCeEEEEEEeecCCeEEEEEEEECC-CCCcCchH--HHHHHHHh
Confidence 99999999999999999999999999999999999998888999999996 89888653 56666655
No 33
>PRK00227 glnD PII uridylyl-transferase; Provisional
Probab=99.40 E-value=6e-12 Score=130.02 Aligned_cols=177 Identities=11% Similarity=0.092 Sum_probs=125.4
Q ss_pred chhhhhccccccCCCCCCCCCCCCCCCCCcEEEEeecCCCCeEEEEEEe-CCCccHHHHHHHHHHHCCceEEEEEEEEeC
Q 022480 61 NILFASVNGTNAVSPTPLKSDQDADYIPMPHVLIDQDSNSDATIVQLSF-GDRLGALIDTMNALKDLGLDVAKGTVNTEG 139 (296)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~V~i~~~~~~~~t~V~V~~-~DrpGLLa~i~~vL~~~glnI~~A~I~T~~ 139 (296)
..|+...++..+++.. +.+.. ..+..+... .++ -.++|.. +|++|+|.+++++|+.+|++|++|++.+ +
T Consensus 514 ~~L~~~a~~~L~~~~~-~~p~~----~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~~~-~ 583 (693)
T PRK00227 514 RIVCSRARARLTDIRP-VAPMF----AARSDIGLV---EED-GFFTVIWHGDYPRELVRVLALIAAKGWNILSARMVA-N 583 (693)
T ss_pred HHHHHHHHHHhcCCCC-CCCCC----CCccccccc---ccC-CeEEEEecCCcccHHHHHHHHHHhcCceeeEeEEec-C
Confidence 3477777778877775 22211 111111111 112 4777777 9999999999999999999999999999 6
Q ss_pred CeEEEEEEEeecCCCCCCCChHHHHHHHHHHHHhhcccCCCchhHhhhccccCccCCCccccccccceeeeccCCCCcEE
Q 022480 140 SVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLKYHPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSL 219 (296)
Q Consensus 140 ~~~~d~F~V~~~~~g~~l~~~~~l~~L~~~L~~~L~~~~~~~~~~La~~~~~~~~~~~r~~~~~~~~~V~v~~~~~~~Tv 219 (296)
+..+..|.|.+. .|.++++ ..+++.++..+.+. .+. ++ ..++++.+.+ ++
T Consensus 584 ~~~~~~~~v~~~-~~~~~~~----~~~~~~~~~~~~~~-~~~---~~----------------~~~~~~~~~~-----~~ 633 (693)
T PRK00227 584 GPWSAEFDVRAN-GPQDFDP----QEFLQAYKSGVYSE-LPD---PA----------------PGITATFWHG-----NI 633 (693)
T ss_pred CceEEEEEEecC-CCCCCCh----HHHHHHHHHhhcCC-CCc---cc----------------CCCCceEeeC-----cE
Confidence 666889999985 7876533 56777777766542 110 00 1233333332 89
Q ss_pred EEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCeeeeEEEEEeCCCCCChHHHHHHHHHHHHHcC
Q 022480 220 LYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGGAALNSSLSQVLVNCLRYYLR 287 (296)
Q Consensus 220 leV~t~DRPGLL~dIt~~La~~gv~I~~AkI~T~G~ra~D~F~V~~~g~~L~~~~~~~L~~~L~~~l~ 287 (296)
+||++.||||+|++|+++|. +|.+|+++|.|..++|.||+.. | ..+..+...+..+|.
T Consensus 634 ~e~r~~dr~g~l~~~~~~l~----~~~~~~~~~~g~~~~~~~~~~~-~-----~~r~~~~~~~~~~~~ 691 (693)
T PRK00227 634 LEVRTEDRRGALGALLGVLP----DLLWITASTPGATMIVQAALKP-G-----FDRATVERDVTRVLA 691 (693)
T ss_pred EEEEeCccccHHHHHHHHhh----hhhhHhhcCCCcceEEEEEecC-c-----ccHHHHHHHHHHHHh
Confidence 99999999999999999999 8999999999999999999962 1 124566666666554
No 34
>cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. This CD includes a novel, yet uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.36 E-value=6.1e-12 Score=93.48 Aligned_cols=52 Identities=21% Similarity=0.263 Sum_probs=48.2
Q ss_pred EEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEeCCeE-EEEEEEeecCCCC
Q 022480 103 TIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVK-QTKFFITRLDTGR 155 (296)
Q Consensus 103 t~V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~~~~~-~d~F~V~~~~~g~ 155 (296)
.+|.|+++||||||++++++|+.+|+||++|+|+|+.+++ +|+|+|++. +|.
T Consensus 2 ~eI~V~~~Dr~gLFa~iag~L~~~~LnI~~A~i~tt~dG~~LDtF~V~d~-~~~ 54 (68)
T cd04928 2 HEITFAAGDKPKLLSQLSSLLGDLGLNIAEAHAFSTDDGLALDIFVVTGW-KRG 54 (68)
T ss_pred EEEEEEECCCcchHHHHHHHHHHCCCceEEEEEEEcCCCeEEEEEEEecC-Ccc
Confidence 5899999999999999999999999999999999998877 699999996 664
No 35
>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.33 E-value=1.5e-11 Score=91.96 Aligned_cols=67 Identities=30% Similarity=0.550 Sum_probs=59.4
Q ss_pred EEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEeCCeEEEEEEEeecCCCCCCCChHHHHHHHHHHH
Q 022480 103 TIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTII 171 (296)
Q Consensus 103 t~V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~~~~~~d~F~V~~~~~g~~l~~~~~l~~L~~~L~ 171 (296)
+.|+|+++||||+|++++++|+++|+||++|++++.++..+|+|+|.+. +|.++ +++++++|++.|-
T Consensus 2 tri~V~~~D~~Gll~~i~~~l~~~~lnI~sa~i~t~~~~~~d~f~v~~~-~~~~~-~~~~~~~l~~~l~ 68 (72)
T cd04926 2 VRLELRTEDRVGLLSDVTRVFRENGLTVTRAEISTQGDMAVNVFYVTDA-NGNPV-DPKTIEAVRQEIG 68 (72)
T ss_pred eEEEEEECCccCHHHHHHHHHHHCCcEEEEEEEecCCCeEEEEEEEECC-CCCcC-CHHHHHHHHHHhc
Confidence 6899999999999999999999999999999999997766899999996 77776 6678888877764
No 36
>cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.32 E-value=1.7e-11 Score=89.93 Aligned_cols=69 Identities=32% Similarity=0.528 Sum_probs=62.2
Q ss_pred EEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCeeeeEEEEEe-CCCCCChHHHHHHHHHHHHHc
Q 022480 218 SLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSY-GGAALNSSLSQVLVNCLRYYL 286 (296)
Q Consensus 218 TvleV~t~DRPGLL~dIt~~La~~gv~I~~AkI~T~G~ra~D~F~V~~-~g~~L~~~~~~~L~~~L~~~l 286 (296)
|+|+|.+.||||+|++|+++|+++|++|.++++.|.++.+.|.|++++ +|.++..+..++|+++|..+|
T Consensus 1 ~~l~v~~~d~~gll~~i~~~l~~~~~~I~~~~~~~~~~~~~~~f~i~~~~~~~~~~~~~~~i~~~l~~~~ 70 (70)
T cd04899 1 TVLELTALDRPGLLADVTRVLAELGLNIHSAKIATLGERAEDVFYVTDADGQPLDPERQEALRAALGEAL 70 (70)
T ss_pred CEEEEEEcCCccHHHHHHHHHHHCCCeEEEEEEEecCCEEEEEEEEECCCCCcCCHHHHHHHHHHHHhhC
Confidence 579999999999999999999999999999999999889999999997 777765557788999987764
No 37
>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.29 E-value=3.4e-11 Score=90.10 Aligned_cols=65 Identities=26% Similarity=0.410 Sum_probs=56.6
Q ss_pred EEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCeeeeEEEEEe-CCCCCChHHHHHHHHHH
Q 022480 218 SLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSY-GGAALNSSLSQVLVNCL 282 (296)
Q Consensus 218 TvleV~t~DRPGLL~dIt~~La~~gv~I~~AkI~T~G~ra~D~F~V~~-~g~~L~~~~~~~L~~~L 282 (296)
+.|+|.++||||+|++|+.+|+++|+||.++++.|.++.+.|+|+|.+ +|.++..+.+++|+++|
T Consensus 2 tri~V~~~D~~Gll~~i~~~l~~~~lnI~sa~i~t~~~~~~d~f~v~~~~~~~~~~~~~~~l~~~l 67 (72)
T cd04926 2 VRLELRTEDRVGLLSDVTRVFRENGLTVTRAEISTQGDMAVNVFYVTDANGNPVDPKTIEAVRQEI 67 (72)
T ss_pred eEEEEEECCccCHHHHHHHHHHHCCcEEEEEEEecCCCeEEEEEEEECCCCCcCCHHHHHHHHHHh
Confidence 689999999999999999999999999999999999889999999997 88887444555555554
No 38
>cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.26 E-value=6.3e-11 Score=86.95 Aligned_cols=69 Identities=29% Similarity=0.494 Sum_probs=61.8
Q ss_pred EEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEeCCeEEEEEEEeecCCCCCCCChHHHHHHHHHHHHh
Q 022480 103 TIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINN 173 (296)
Q Consensus 103 t~V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~~~~~~d~F~V~~~~~g~~l~~~~~l~~L~~~L~~~ 173 (296)
|.|.|+++|++|+|++++++|+++|+||.++++.+.++...|+|++.+. +|.+ .+.+++++|++.|.++
T Consensus 1 ~~l~v~~~d~~gll~~i~~~l~~~~~~I~~~~~~~~~~~~~~~f~i~~~-~~~~-~~~~~~~~i~~~l~~~ 69 (70)
T cd04899 1 TVLELTALDRPGLLADVTRVLAELGLNIHSAKIATLGERAEDVFYVTDA-DGQP-LDPERQEALRAALGEA 69 (70)
T ss_pred CEEEEEEcCCccHHHHHHHHHHHCCCeEEEEEEEecCCEEEEEEEEECC-CCCc-CCHHHHHHHHHHHHhh
Confidence 4789999999999999999999999999999999998877899999996 7777 4568999999998764
No 39
>cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD. This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted t
Probab=99.05 E-value=2.6e-09 Score=77.73 Aligned_cols=69 Identities=32% Similarity=0.498 Sum_probs=59.7
Q ss_pred EEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCeeeeEEEEEe-CCCCCChHHHHHHHHHHHHHc
Q 022480 218 SLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSY-GGAALNSSLSQVLVNCLRYYL 286 (296)
Q Consensus 218 TvleV~t~DRPGLL~dIt~~La~~gv~I~~AkI~T~G~ra~D~F~V~~-~g~~L~~~~~~~L~~~L~~~l 286 (296)
+.|.|.+.|+||+|++|+++|+++|++|.++++.+.++...+.|++.. +|.+..++.++.|+++|+.++
T Consensus 1 ~~l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~~ 70 (70)
T cd04873 1 TVVEVYAPDRPGLLADITRVLADLGLNIHDARISTTGERALDVFYVTDSDGRPLDPERIARLEEALEDAL 70 (70)
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHCCCeEEEEEEeecCCEEEEEEEEECCCCCcCCHHHHHHHHHHHHhhC
Confidence 468899999999999999999999999999999998789999999986 666655557788888887653
No 40
>cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD. This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted t
Probab=98.98 E-value=6.7e-09 Score=75.53 Aligned_cols=68 Identities=29% Similarity=0.520 Sum_probs=59.4
Q ss_pred EEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEeCCeEEEEEEEeecCCCCCCCChHHHHHHHHHHHHh
Q 022480 104 IVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINN 173 (296)
Q Consensus 104 ~V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~~~~~~d~F~V~~~~~g~~l~~~~~l~~L~~~L~~~ 173 (296)
.|.|.++|+||+|++++++|+.+|++|.++++.+.++...+.|++..+ ++.. .+++++++|++.|..+
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~~~v~~~-~~~~-~~~~~~~~l~~~l~~~ 69 (70)
T cd04873 2 VVEVYAPDRPGLLADITRVLADLGLNIHDARISTTGERALDVFYVTDS-DGRP-LDPERIARLEEALEDA 69 (70)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHCCCeEEEEEEeecCCEEEEEEEEECC-CCCc-CCHHHHHHHHHHHHhh
Confidence 688999999999999999999999999999999998866799999985 6555 4558999999988764
No 41
>cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. This CD includes a novel, yet uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.97 E-value=5.8e-09 Score=77.56 Aligned_cols=64 Identities=19% Similarity=0.304 Sum_probs=53.3
Q ss_pred EEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEe-cCCeeeeEEEEEe-CCCCCChHHHHHHHHHHHHHc
Q 022480 218 SLLYIETADRPGLLVEIMKIIADVNVDVESAEIDT-EGLVAKDKFHVSY-GGAALNSSLSQVLVNCLRYYL 286 (296)
Q Consensus 218 TvleV~t~DRPGLL~dIt~~La~~gv~I~~AkI~T-~G~ra~D~F~V~~-~g~~L~~~~~~~L~~~L~~~l 286 (296)
..|.|.++|||||+++|+.+|+.+|+||..|+|.| ..+.+.|+|+|.+ +|+- -..|.++|+++|
T Consensus 2 ~eI~V~~~Dr~gLFa~iag~L~~~~LnI~~A~i~tt~dG~~LDtF~V~d~~~~~-----~~~~~~~~~~~~ 67 (68)
T cd04928 2 HEITFAAGDKPKLLSQLSSLLGDLGLNIAEAHAFSTDDGLALDIFVVTGWKRGE-----TAALGHALQKEI 67 (68)
T ss_pred EEEEEEECCCcchHHHHHHHHHHCCCceEEEEEEEcCCCeEEEEEEEecCCccc-----hHHHHHHHHHhh
Confidence 46889999999999999999999999999999975 5688999999997 5543 245666666655
No 42
>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.
Probab=98.73 E-value=1.5e-07 Score=71.05 Aligned_cols=64 Identities=16% Similarity=0.205 Sum_probs=53.0
Q ss_pred eEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEeCCeEEEEEEEeecCCCCCCCChHHHHHHHHHHHHh
Q 022480 102 ATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINN 173 (296)
Q Consensus 102 ~t~V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~~~~~~d~F~V~~~~~g~~l~~~~~l~~L~~~L~~~ 173 (296)
+.+|++.|+||||+++.++++|+++||||.+.++.+.++.+.-.+.|.-+ ++..++|+..|...
T Consensus 2 ~~vItv~G~DrpGiv~~v~~~l~~~g~ni~d~~~~~~~~~f~~~~~v~~~--------~~~~~~l~~~L~~l 65 (76)
T PF13740_consen 2 QLVITVVGPDRPGIVAAVTGVLAEHGCNIEDSRQAVLGGRFTLIMLVSIP--------EDSLERLESALEEL 65 (76)
T ss_dssp EEEEEEEEE--TTHHHHHHHHHHCTT-EEEEEEEEEETTEEEEEEEEEES--------HHHHHHHHHHHHHH
T ss_pred EEEEEEEecCCCcHHHHHHHHHHHCCCcEEEEEEEEEcCeEEEEEEEEeC--------cccHHHHHHHHHHH
Confidence 46899999999999999999999999999999999999999877777652 36778888888874
No 43
>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold. ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. The archetypical ACT domain is the C-terminal regulatory domain of 3-phosphoglycerate dehydrogenase (3PGDH), which folds with a ferredoxin-like topology. A pair of ACT domains form an eight-stranded antiparallel sheet with two molecules of allosteric inhibitor serine bound in the interface. Biochemical exploration of a few other proteins containing ACT domains supports the suggestions that these domains contain the archetypical ACT structure [].; GO: 0016597 amino acid binding, 0008152 metabolic process; PDB: 3L76_B 2F06_B 3NRB_C 1Y7P_C 2QMX_A 2DT9_A 2ZHO_D 3K5P_A 3TVI_K 3C1M_C ....
Probab=98.63 E-value=4.5e-07 Score=64.98 Aligned_cols=62 Identities=19% Similarity=0.225 Sum_probs=46.5
Q ss_pred EEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCe--eeeEEEEEeCCCCCChHHHHHHHHHHHHH
Q 022480 218 SLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLV--AKDKFHVSYGGAALNSSLSQVLVNCLRYY 285 (296)
Q Consensus 218 TvleV~t~DRPGLL~dIt~~La~~gv~I~~AkI~T~G~r--a~D~F~V~~~g~~L~~~~~~~L~~~L~~~ 285 (296)
|+|.|.++||||+|++|+++|+++|+||.++...+.+.. ...++...+ ....+++.++|+++
T Consensus 1 ~~v~v~~~drpG~l~~v~~~la~~~inI~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~l~~~ 64 (66)
T PF01842_consen 1 YRVRVIVPDRPGILADVTEILADHGINIDSISQSSDKDGVGIVFIVIVVD------EEDLEKLLEELEAL 64 (66)
T ss_dssp EEEEEEEETSTTHHHHHHHHHHHTTEEEEEEEEEEESSTTEEEEEEEEEE------GHGHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcCCCHHHeEEEecCCCceEEEEEEECC------CCCHHHHHHHHHcc
Confidence 678999999999999999999999999999999988764 333333322 11345666666654
No 44
>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.
Probab=98.52 E-value=9.8e-07 Score=66.52 Aligned_cols=66 Identities=17% Similarity=0.219 Sum_probs=53.2
Q ss_pred cEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCeeeeEEEEEeCCCCCChHHHHHHHHHHHHHcC
Q 022480 217 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGGAALNSSLSQVLVNCLRYYLR 287 (296)
Q Consensus 217 ~TvleV~t~DRPGLL~dIt~~La~~gv~I~~AkI~T~G~ra~D~F~V~~~g~~L~~~~~~~L~~~L~~~l~ 287 (296)
+.+|.+.|+||||++++|+++|+++|+||...+..+.|++..-.+.++-. +...++|+++|.....
T Consensus 2 ~~vItv~G~DrpGiv~~v~~~l~~~g~ni~d~~~~~~~~~f~~~~~v~~~-----~~~~~~l~~~L~~l~~ 67 (76)
T PF13740_consen 2 QLVITVVGPDRPGIVAAVTGVLAEHGCNIEDSRQAVLGGRFTLIMLVSIP-----EDSLERLESALEELAE 67 (76)
T ss_dssp EEEEEEEEE--TTHHHHHHHHHHCTT-EEEEEEEEEETTEEEEEEEEEES-----HHHHHHHHHHHHHHHH
T ss_pred EEEEEEEecCCCcHHHHHHHHHHHCCCcEEEEEEEEEcCeEEEEEEEEeC-----cccHHHHHHHHHHHHH
Confidence 46899999999999999999999999999999999999998888888643 3356778888776543
No 45
>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold. ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. The archetypical ACT domain is the C-terminal regulatory domain of 3-phosphoglycerate dehydrogenase (3PGDH), which folds with a ferredoxin-like topology. A pair of ACT domains form an eight-stranded antiparallel sheet with two molecules of allosteric inhibitor serine bound in the interface. Biochemical exploration of a few other proteins containing ACT domains supports the suggestions that these domains contain the archetypical ACT structure [].; GO: 0016597 amino acid binding, 0008152 metabolic process; PDB: 3L76_B 2F06_B 3NRB_C 1Y7P_C 2QMX_A 2DT9_A 2ZHO_D 3K5P_A 3TVI_K 3C1M_C ....
Probab=98.50 E-value=1.9e-06 Score=61.75 Aligned_cols=61 Identities=18% Similarity=0.202 Sum_probs=47.1
Q ss_pred EEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEeCC--eEEEEEEEeecCCCCCCCChHHHHHHHHHHHH
Q 022480 103 TIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGS--VKQTKFFITRLDTGRKVEDPDLLERIRLTIIN 172 (296)
Q Consensus 103 t~V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~~~--~~~d~F~V~~~~~g~~l~~~~~l~~L~~~L~~ 172 (296)
+.|.|.++||||+|++++++|+++|+||..+.+.+.++ +....+.+.+. ...+.+.+.|++
T Consensus 1 ~~v~v~~~drpG~l~~v~~~la~~~inI~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~l~~ 63 (66)
T PF01842_consen 1 YRVRVIVPDRPGILADVTEILADHGINIDSISQSSDKDGVGIVFIVIVVDE---------EDLEKLLEELEA 63 (66)
T ss_dssp EEEEEEEETSTTHHHHHHHHHHHTTEEEEEEEEEEESSTTEEEEEEEEEEG---------HGHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcCCCHHHeEEEecCCCceEEEEEEECCC---------CCHHHHHHHHHc
Confidence 57899999999999999999999999999999999988 33433433331 344556666654
No 46
>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int
Probab=98.50 E-value=1e-06 Score=66.59 Aligned_cols=62 Identities=13% Similarity=0.201 Sum_probs=49.2
Q ss_pred EEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEeCCeEEEEEEEeecCCCCCCCChHHHHHHHHHHHH
Q 022480 103 TIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIIN 172 (296)
Q Consensus 103 t~V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~~~~~~d~F~V~~~~~g~~l~~~~~l~~L~~~L~~ 172 (296)
++|++.|+||||++++++++|+++|+||.+.+.+..++.|.-...+..+ + ...+.|++.|..
T Consensus 2 ~iltv~g~Dr~GiVa~vs~~la~~g~nI~d~~q~~~~~~F~m~~~~~~~----~----~~~~~l~~~l~~ 63 (77)
T cd04893 2 LVISALGTDRPGILNELTRAVSESGCNILDSRMAILGTEFALTMLVEGS----W----DAIAKLEAALPG 63 (77)
T ss_pred EEEEEEeCCCChHHHHHHHHHHHcCCCEEEceeeEEcCEEEEEEEEEec----c----ccHHHHHHHHHH
Confidence 6899999999999999999999999999999999998888544444431 1 234666666665
No 47
>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.43 E-value=9e-07 Score=66.39 Aligned_cols=63 Identities=21% Similarity=0.225 Sum_probs=47.8
Q ss_pred EEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCeeeeEEEEEe-CCCCCChHHHHHHHHHHHHHc
Q 022480 219 LLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSY-GGAALNSSLSQVLVNCLRYYL 286 (296)
Q Consensus 219 vleV~t~DRPGLL~dIt~~La~~gv~I~~AkI~T~G~ra~D~F~V~~-~g~~L~~~~~~~L~~~L~~~l 286 (296)
+++|.++||||++++|+++|+++|+||...+-.+.+++-.-.|.+.- .+.. .+.|+++|....
T Consensus 1 ~vtv~G~DrpGiv~~vt~~la~~~~nI~dl~~~~~~~~f~~~~~v~~p~~~~-----~~~l~~~l~~l~ 64 (75)
T cd04870 1 LITVTGPDRPGLTSALTEVLAAHGVRILDVGQAVIHGRLSLGILVQIPDSAD-----SEALLKDLLFKA 64 (75)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHCCCCEEecccEEEcCeeEEEEEEEcCCCCC-----HHHHHHHHHHHH
Confidence 47899999999999999999999999999999888877555666642 2322 345555555444
No 48
>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.40 E-value=1.6e-06 Score=65.01 Aligned_cols=63 Identities=10% Similarity=0.037 Sum_probs=50.7
Q ss_pred EEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEeCCeEEEEEEEeecCCCCCCCChHHHHHHHHHHHHh
Q 022480 104 IVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINN 173 (296)
Q Consensus 104 ~V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~~~~~~d~F~V~~~~~g~~l~~~~~l~~L~~~L~~~ 173 (296)
+|+|.|+||||++++++++|+++|+||.+.+..+.++.+.-.|.+.-+ .+ ...+.+++.|...
T Consensus 1 ~vtv~G~DrpGiv~~vt~~la~~~~nI~dl~~~~~~~~f~~~~~v~~p-~~------~~~~~l~~~l~~l 63 (75)
T cd04870 1 LITVTGPDRPGLTSALTEVLAAHGVRILDVGQAVIHGRLSLGILVQIP-DS------ADSEALLKDLLFK 63 (75)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHCCCCEEecccEEEcCeeEEEEEEEcC-CC------CCHHHHHHHHHHH
Confidence 478999999999999999999999999999999998887766777653 22 1246677777663
No 49
>cd04894 ACT_ACR-like_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.19 E-value=5.6e-06 Score=60.15 Aligned_cols=67 Identities=13% Similarity=0.318 Sum_probs=57.9
Q ss_pred EEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEeCCeEEEEEEEeecCCCCCCCChHHHHHHHHHHHHh
Q 022480 103 TIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINN 173 (296)
Q Consensus 103 t~V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~~~~~~d~F~V~~~~~g~~l~~~~~l~~L~~~L~~~ 173 (296)
++|+|.+||+.||-.++|+++.+.|++|..+.+.|.|.+..-+|+|... . ..+ +-+|+.|+++|.++
T Consensus 1 tvitvnCPDktGLgcdlcr~il~fGl~i~rgd~sTDGkWCyiv~wVv~~-~-~~~--~~rW~lLK~RL~~~ 67 (69)
T cd04894 1 SVITINCPDKTGLGCDLCRIILEFGLNITRGDDSTDGRWCYIVFWVVPR-P-PSI--KVRWDLLKNRLMSA 67 (69)
T ss_pred CEEEEeCCCccCcccHHHHHHHHhceEEEecccccCCcEEEEEEEEecC-C-CCC--cccHHHHHHHHHhc
Confidence 4789999999999999999999999999999999999988778999874 2 222 36899999988764
No 50
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=98.17 E-value=0.00014 Score=59.54 Aligned_cols=112 Identities=19% Similarity=0.322 Sum_probs=79.7
Q ss_pred EEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEeCCeEEEEEEEeecCCCCCCCChHHHHHHHHHHHHhhcccCCCch
Q 022480 103 TIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLKYHPESS 182 (296)
Q Consensus 103 t~V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~~~~~~d~F~V~~~~~g~~l~~~~~l~~L~~~L~~~L~~~~~~~~ 182 (296)
-++.|+..|+||-|+.++..|.++|+||..-.|..+++.-+-..+|.. |+ .-.+.|+++
T Consensus 4 KQISvFlENk~GRL~~~~~~L~eagINiRA~tiAdt~dFGIiRmvV~~---------~d---~A~~~Lee~--------- 62 (142)
T COG4747 4 KQISVFLENKPGRLASVANKLKEAGINIRAFTIADTGDFGIIRMVVDR---------PD---EAHSVLEEA--------- 62 (142)
T ss_pred eEEEEEecCCcchHHHHHHHHHHcCCceEEEEeccccCcceEEEEcCC---------hH---HHHHHHHHC---------
Confidence 368899999999999999999999999999999888883332333322 11 112223220
Q ss_pred hHhhhccccCccCCCccccccccceeeeccCCCCcEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEec-CCeeeeEE
Q 022480 183 EQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTE-GLVAKDKF 261 (296)
Q Consensus 183 ~~La~~~~~~~~~~~r~~~~~~~~~V~v~~~~~~~TvleV~t~DRPGLL~dIt~~La~~gv~I~~AkI~T~-G~ra~D~F 261 (296)
.|. |. ...++-|+..|+||=|.+|..+|.++|+|+.++..-+. ...+.=.|
T Consensus 63 ------------------gF~----Vr------~~dVlaVEmeD~PG~l~~I~~vl~d~diNldYiYAFv~ek~KAlli~ 114 (142)
T COG4747 63 ------------------GFT----VR------ETDVLAVEMEDVPGGLSRIAEVLGDADINLDYIYAFVTEKQKALLIV 114 (142)
T ss_pred ------------------CcE----EE------eeeEEEEEecCCCCcHHHHHHHHhhcCcCceeeeeeeecCceEEEEE
Confidence 011 11 12578889999999999999999999999999988654 44455444
Q ss_pred EE
Q 022480 262 HV 263 (296)
Q Consensus 262 ~V 263 (296)
.+
T Consensus 115 r~ 116 (142)
T COG4747 115 RV 116 (142)
T ss_pred Eh
Confidence 44
No 51
>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int
Probab=98.15 E-value=2.1e-05 Score=59.45 Aligned_cols=39 Identities=18% Similarity=0.389 Sum_probs=35.9
Q ss_pred EEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCe
Q 022480 218 SLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLV 256 (296)
Q Consensus 218 TvleV~t~DRPGLL~dIt~~La~~gv~I~~AkI~T~G~r 256 (296)
.+|.+.|+|||||+++|+++|+++|+||...+-.+.+++
T Consensus 2 ~iltv~g~Dr~GiVa~vs~~la~~g~nI~d~~q~~~~~~ 40 (77)
T cd04893 2 LVISALGTDRPGILNELTRAVSESGCNILDSRMAILGTE 40 (77)
T ss_pred EEEEEEeCCCChHHHHHHHHHHHcCCCEEEceeeEEcCE
Confidence 688999999999999999999999999999999886554
No 52
>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein. This CD, ACT_1ZPV, includes those single ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein (pdb structure 1ZPV). Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.08 E-value=1.4e-05 Score=61.68 Aligned_cols=66 Identities=15% Similarity=0.130 Sum_probs=46.5
Q ss_pred EEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCeeeeEEEEEeCCCCCChHHHHHHHHHHHHHc
Q 022480 218 SLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGGAALNSSLSQVLVNCLRYYL 286 (296)
Q Consensus 218 TvleV~t~DRPGLL~dIt~~La~~gv~I~~AkI~T~G~ra~D~F~V~~~g~~L~~~~~~~L~~~L~~~l 286 (296)
.++++.|+||||++++|+++|+++|+||...+-.+.+++..=.+.+.-.+...+ .+.|++.|....
T Consensus 2 ~vl~i~g~D~pGiva~vt~~la~~g~nI~~~~~~~~~~~f~~~~~v~~~~~~~~---~~~L~~~l~~l~ 67 (88)
T cd04872 2 AVITVVGKDRVGIVAGVSTKLAELNVNILDISQTIMDGYFTMIMIVDISESNLD---FAELQEELEELG 67 (88)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHcCCCEEechhHhhCCccEEEEEEEeCCCCCC---HHHHHHHHHHHH
Confidence 578999999999999999999999999999999887654333333322210121 345555555544
No 53
>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein. This CD, ACT_1ZPV, includes those single ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein (pdb structure 1ZPV). Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.08 E-value=1.4e-05 Score=61.59 Aligned_cols=64 Identities=8% Similarity=0.096 Sum_probs=49.4
Q ss_pred EEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEeCCeEEEEEEEeecCCCCCCCChHHHHHHHHHHHH
Q 022480 103 TIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIIN 172 (296)
Q Consensus 103 t~V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~~~~~~d~F~V~~~~~g~~l~~~~~l~~L~~~L~~ 172 (296)
.+|++.|+||||++++++++|+++|+||.+.+..+.++.+.-.+.+.-+ . . ....+.|++.|..
T Consensus 2 ~vl~i~g~D~pGiva~vt~~la~~g~nI~~~~~~~~~~~f~~~~~v~~~-~---~--~~~~~~L~~~l~~ 65 (88)
T cd04872 2 AVITVVGKDRVGIVAGVSTKLAELNVNILDISQTIMDGYFTMIMIVDIS-E---S--NLDFAELQEELEE 65 (88)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHcCCCEEechhHhhCCccEEEEEEEeC-C---C--CCCHHHHHHHHHH
Confidence 4789999999999999999999999999999999987766555555542 1 0 0124666766665
No 54
>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase). This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.04 E-value=9.5e-06 Score=60.44 Aligned_cols=63 Identities=14% Similarity=0.280 Sum_probs=45.3
Q ss_pred EEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCeeeeEEEEEe--CCCC--CChHHHHHHHHHHHHHc
Q 022480 219 LLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSY--GGAA--LNSSLSQVLVNCLRYYL 286 (296)
Q Consensus 219 vleV~t~DRPGLL~dIt~~La~~gv~I~~AkI~T~G~ra~D~F~V~~--~g~~--L~~~~~~~L~~~L~~~l 286 (296)
+|++.|+||||++++|+++|+++|+||...+..+.. ....|+++= +..+ .+ .++|+++|....
T Consensus 1 ii~v~g~D~~Giv~~it~~l~~~g~nI~~~~~~~~~--~~~~f~~~~~~~~~~~~~~---~~~l~~~l~~l~ 67 (74)
T cd04875 1 ILTLSCPDRPGIVAAVSGFLAEHGGNIVESDQFVDP--DSGRFFMRVEFELEGFDLS---REALEAAFAPVA 67 (74)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCEEeeeeeecC--CCCeEEEEEEEEeCCCCCC---HHHHHHHHHHHH
Confidence 478999999999999999999999999999998732 223577752 2221 22 355565555543
No 55
>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in
Probab=98.04 E-value=3.3e-05 Score=58.07 Aligned_cols=66 Identities=20% Similarity=0.249 Sum_probs=47.8
Q ss_pred EEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCe--eeeEEEEE-e-CCCCCChHHHHHHHHHHHHHc
Q 022480 219 LLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLV--AKDKFHVS-Y-GGAALNSSLSQVLVNCLRYYL 286 (296)
Q Consensus 219 vleV~t~DRPGLL~dIt~~La~~gv~I~~AkI~T~G~r--a~D~F~V~-~-~g~~L~~~~~~~L~~~L~~~l 286 (296)
+|.+.|+||||++++|+++|+++|+||...+..|.+.. ....|.++ . +..+- ....+|++.|....
T Consensus 1 ~l~v~g~D~~Giv~~it~~l~~~~~nI~~~~~~~~~~~~~~~~~~~~~~~v~~p~~--~~~~~l~~~l~~l~ 70 (81)
T cd04869 1 VVEVVGNDRPGIVHEVTQFLAQRNINIEDLSTETYSAPMSGTPLFKAQATLALPAG--TDLDALREELEELC 70 (81)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHcCCCeEEeEeeeecCCCCCcceEEEEEEEecCCC--CCHHHHHHHHHHHH
Confidence 47899999999999999999999999999999988732 44566665 2 33221 12455666665544
No 56
>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in
Probab=98.03 E-value=4.1e-05 Score=57.53 Aligned_cols=62 Identities=15% Similarity=0.209 Sum_probs=46.4
Q ss_pred EEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEeC------CeEEEEEEEeecCCCCCCCChHHHHHHHHHHHH
Q 022480 104 IVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEG------SVKQTKFFITRLDTGRKVEDPDLLERIRLTIIN 172 (296)
Q Consensus 104 ~V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~~------~~~~d~F~V~~~~~g~~l~~~~~l~~L~~~L~~ 172 (296)
+|+|.|+|+||++++++++|+++|+||.+.+..+.+ +.+.-.+.+.-+ .+ ...+++++.|..
T Consensus 1 ~l~v~g~D~~Giv~~it~~l~~~~~nI~~~~~~~~~~~~~~~~~~~~~~~v~~p-~~------~~~~~l~~~l~~ 68 (81)
T cd04869 1 VVEVVGNDRPGIVHEVTQFLAQRNINIEDLSTETYSAPMSGTPLFKAQATLALP-AG------TDLDALREELEE 68 (81)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHcCCCeEEeEeeeecCCCCCcceEEEEEEEecC-CC------CCHHHHHHHHHH
Confidence 378999999999999999999999999999999987 334334444432 11 124667777766
No 57
>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase). This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.99 E-value=2e-05 Score=58.64 Aligned_cols=35 Identities=23% Similarity=0.303 Sum_probs=32.9
Q ss_pred EEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEe
Q 022480 104 IVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTE 138 (296)
Q Consensus 104 ~V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~ 138 (296)
+|+|.|+||||++++++++|+++|+||.+.+.++.
T Consensus 1 ii~v~g~D~~Giv~~it~~l~~~g~nI~~~~~~~~ 35 (74)
T cd04875 1 ILTLSCPDRPGIVAAVSGFLAEHGGNIVESDQFVD 35 (74)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCEEeeeeeec
Confidence 47899999999999999999999999999999874
No 58
>PRK00194 hypothetical protein; Validated
Probab=97.99 E-value=4.6e-05 Score=58.78 Aligned_cols=41 Identities=12% Similarity=0.290 Sum_probs=37.2
Q ss_pred cEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCee
Q 022480 217 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVA 257 (296)
Q Consensus 217 ~TvleV~t~DRPGLL~dIt~~La~~gv~I~~AkI~T~G~ra 257 (296)
.+++++.|+||||++++|+++|+++|+||....-.+.+++.
T Consensus 3 ~~~ltv~g~DrpGiva~vt~~la~~g~nI~~~~~~~~~~~~ 43 (90)
T PRK00194 3 KAIITVIGKDKVGIIAGVSTVLAELNVNILDISQTIMDGYF 43 (90)
T ss_pred eEEEEEEcCCCCCHHHHHHHHHHHcCCCEEehhhHhhCCee
Confidence 57999999999999999999999999999999988876543
No 59
>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.
Probab=97.97 E-value=3.2e-05 Score=58.27 Aligned_cols=63 Identities=29% Similarity=0.386 Sum_probs=47.1
Q ss_pred cEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEec--CCeeeeEEEEEeCCCCCChHHHHHHHHHHH
Q 022480 217 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTE--GLVAKDKFHVSYGGAALNSSLSQVLVNCLR 283 (296)
Q Consensus 217 ~TvleV~t~DRPGLL~dIt~~La~~gv~I~~AkI~T~--G~ra~D~F~V~~~g~~L~~~~~~~L~~~L~ 283 (296)
.+.|.|.+.||||+|++|+++|++.|+||..+.+.+. ++.+.-.|.+.=.+ .++++.|.+.|+
T Consensus 6 ~~~l~i~~~dr~GlL~dI~~~i~~~~~nI~~i~~~~~~~~~~~~~~l~v~V~d----~~~L~~ii~~L~ 70 (80)
T PF13291_consen 6 PVRLRIEAEDRPGLLADITSVISENGVNIRSINARTNKDDGTARITLTVEVKD----LEHLNQIIRKLR 70 (80)
T ss_dssp EEEEEEEEE--TTHHHHHHHHHHCSSSEEEEEEEEE--ETTEEEEEEEEEESS----HHHHHHHHHHHC
T ss_pred EEEEEEEEEcCCCHHHHHHHHHHHCCCCeEEEEeEEeccCCEEEEEEEEEECC----HHHHHHHHHHHH
Confidence 5789999999999999999999999999999999985 56677777774221 225566666654
No 60
>PRK00194 hypothetical protein; Validated
Probab=97.96 E-value=3.5e-05 Score=59.44 Aligned_cols=65 Identities=9% Similarity=0.146 Sum_probs=48.7
Q ss_pred eEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEeCCeEEEEEEEeecCCCCCCCChHHHHHHHHHHHH
Q 022480 102 ATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIIN 172 (296)
Q Consensus 102 ~t~V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~~~~~~d~F~V~~~~~g~~l~~~~~l~~L~~~L~~ 172 (296)
.++|+|.|+||||++++++++|+++|+||.+.+..+.++.+.-.+.+.-+ +.+ ...+.|++.|..
T Consensus 3 ~~~ltv~g~DrpGiva~vt~~la~~g~nI~~~~~~~~~~~~~~~~~v~~~--~~~----~~~~~l~~~l~~ 67 (90)
T PRK00194 3 KAIITVIGKDKVGIIAGVSTVLAELNVNILDISQTIMDGYFTMIMLVDIS--ESK----KDFAELKEELEE 67 (90)
T ss_pred eEEEEEEcCCCCCHHHHHHHHHHHcCCCEEehhhHhhCCeeEEEEEEEec--CCC----CCHHHHHHHHHH
Confidence 57899999999999999999999999999999999877766544444432 111 113556666655
No 61
>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains. The ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI, a malolactic enzyme (MalLac-Enz) which converts malate to lactate, and other related ACT domains. The yqkJ product is predicted to convert malate directly to lactate, as opposed to related malic enzymes that convert malate to pyruvate. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.71 E-value=0.00028 Score=51.95 Aligned_cols=61 Identities=18% Similarity=0.310 Sum_probs=45.6
Q ss_pred EEEEeCCCcchHHHHHHHHHhCCceEEEEEEEec-CCeeeeEEEEEeCCCCCChHHHHHHHHHHHH
Q 022480 220 LYIETADRPGLLVEIMKIIADVNVDVESAEIDTE-GLVAKDKFHVSYGGAALNSSLSQVLVNCLRY 284 (296)
Q Consensus 220 leV~t~DRPGLL~dIt~~La~~gv~I~~AkI~T~-G~ra~D~F~V~~~g~~L~~~~~~~L~~~L~~ 284 (296)
|.|.+.||||+|++|++++++.|+||......+. .+.+.-.|.+.-.+ .++++.+.++|+.
T Consensus 2 l~v~~~d~~g~L~~i~~~i~~~~~nI~~v~~~~~~~~~~~~~~~vev~~----~~~l~~i~~~L~~ 63 (74)
T cd04887 2 LRLELPNRPGMLGRVTTAIGEAGGDIGAIDLVEQGRDYTVRDITVDAPS----EEHAETIVAAVRA 63 (74)
T ss_pred EEEEeCCCCchHHHHHHHHHHcCCcEEEEEEEEecCCEEEEEEEEEcCC----HHHHHHHHHHHhc
Confidence 6889999999999999999999999999998765 35565556664222 1245666666554
No 62
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Probab=97.65 E-value=0.00011 Score=65.19 Aligned_cols=49 Identities=18% Similarity=0.266 Sum_probs=45.1
Q ss_pred CcEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCeeeeEEEEE
Q 022480 216 KRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVS 264 (296)
Q Consensus 216 ~~TvleV~t~DRPGLL~dIt~~La~~gv~I~~AkI~T~G~ra~D~F~V~ 264 (296)
.+.+|++.|+|||||++.|+++|+++|+||...+....|+.-.-++.++
T Consensus 7 ~~lviTviG~DrpGIVa~vs~~l~~~g~NI~ds~~t~lgg~Fa~i~lvs 55 (190)
T PRK11589 7 HYLVITALGADRPGIVNTITRHVSSCGCNIEDSRLAMLGEEFTFIMLLS 55 (190)
T ss_pred cEEEEEEEcCCCChHHHHHHHHHHHcCCCeeehhhHhhCCceEEEEEEe
Confidence 4789999999999999999999999999999999999999777777774
No 63
>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.
Probab=97.59 E-value=0.00044 Score=52.03 Aligned_cols=62 Identities=16% Similarity=0.225 Sum_probs=43.7
Q ss_pred EEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEeC-Ce-EEEEEEEeecCCCCCCCChHHHHHHHHHHH
Q 022480 103 TIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEG-SV-KQTKFFITRLDTGRKVEDPDLLERIRLTII 171 (296)
Q Consensus 103 t~V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~~-~~-~~d~F~V~~~~~g~~l~~~~~l~~L~~~L~ 171 (296)
+.+.|.+.||+|+|++|+.++++.|+||.+..+.+.. ++ +.-.|.+.-. +.+.++.|-..|+
T Consensus 7 ~~l~i~~~dr~GlL~dI~~~i~~~~~nI~~i~~~~~~~~~~~~~~l~v~V~-------d~~~L~~ii~~L~ 70 (80)
T PF13291_consen 7 VRLRIEAEDRPGLLADITSVISENGVNIRSINARTNKDDGTARITLTVEVK-------DLEHLNQIIRKLR 70 (80)
T ss_dssp EEEEEEEE--TTHHHHHHHHHHCSSSEEEEEEEEE--ETTEEEEEEEEEES-------SHHHHHHHHHHHC
T ss_pred EEEEEEEEcCCCHHHHHHHHHHHCCCCeEEEEeEEeccCCEEEEEEEEEEC-------CHHHHHHHHHHHH
Confidence 5789999999999999999999999999999999974 43 3444555432 3355555555544
No 64
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=97.56 E-value=0.00047 Score=64.81 Aligned_cols=67 Identities=19% Similarity=0.130 Sum_probs=50.6
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEE--eCCeEEEEEEEeecCCCCCCCChHHHHHHHHHHHHh
Q 022480 101 DATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNT--EGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINN 173 (296)
Q Consensus 101 ~~t~V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T--~~~~~~d~F~V~~~~~g~~l~~~~~l~~L~~~L~~~ 173 (296)
...+|+|.|+||||+++.++++|+++|+||.+.+..+ .++.|.-.+.+.- +.. +..++.|+..|...
T Consensus 5 ~~~vitv~G~DrpGIVa~Vt~~La~~g~NI~d~s~~~~~~~g~F~m~i~v~~--~~~----~~~~~~L~~~L~~l 73 (286)
T PRK06027 5 QRYVLTLSCPDRPGIVAAVSNFLYEHGGNIVDADQFVDPETGRFFMRVEFEG--DGL----IFNLETLRADFAAL 73 (286)
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHCCCCEEEceeEEcCCCCeEEEEEEEEe--CCC----CCCHHHHHHHHHHH
Confidence 4678999999999999999999999999999999999 6665543344432 111 12357777777763
No 65
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=97.52 E-value=0.0005 Score=64.67 Aligned_cols=63 Identities=19% Similarity=0.289 Sum_probs=47.5
Q ss_pred cEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEe--cCCeeeeEEEEE-e-CC--CCCChHHHHHHHHHHHHHc
Q 022480 217 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDT--EGLVAKDKFHVS-Y-GG--AALNSSLSQVLVNCLRYYL 286 (296)
Q Consensus 217 ~TvleV~t~DRPGLL~dIt~~La~~gv~I~~AkI~T--~G~ra~D~F~V~-~-~g--~~L~~~~~~~L~~~L~~~l 286 (296)
.++|+|.|+|||||+++|+++|+++|+||...+..+ .++ .|.+. . +. .+.+ .+.|+++|....
T Consensus 6 ~~vitv~G~DrpGIVa~Vt~~La~~g~NI~d~s~~~~~~~g----~F~m~i~v~~~~~~~~---~~~L~~~L~~l~ 74 (286)
T PRK06027 6 RYVLTLSCPDRPGIVAAVSNFLYEHGGNIVDADQFVDPETG----RFFMRVEFEGDGLIFN---LETLRADFAALA 74 (286)
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHCCCCEEEceeEEcCCCC----eEEEEEEEEeCCCCCC---HHHHHHHHHHHH
Confidence 689999999999999999999999999999999998 554 46665 2 32 2332 345555555443
No 66
>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains. The ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI, a malolactic enzyme (MalLac-Enz) which converts malate to lactate, and other related ACT domains. The yqkJ product is predicted to convert malate directly to lactate, as opposed to related malic enzymes that convert malate to pyruvate. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.50 E-value=0.0013 Score=48.24 Aligned_cols=61 Identities=16% Similarity=0.187 Sum_probs=46.0
Q ss_pred EEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEeCCeE-EEEEEEeecCCCCCCCChHHHHHHHHHHHH
Q 022480 105 VQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVK-QTKFFITRLDTGRKVEDPDLLERIRLTIIN 172 (296)
Q Consensus 105 V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~~~~~-~d~F~V~~~~~g~~l~~~~~l~~L~~~L~~ 172 (296)
+.|.+.||||+|++++.++++.|.||.+....+..++. ...|.+.-. +.+.++.+...|+.
T Consensus 2 l~v~~~d~~g~L~~i~~~i~~~~~nI~~v~~~~~~~~~~~~~~~vev~-------~~~~l~~i~~~L~~ 63 (74)
T cd04887 2 LRLELPNRPGMLGRVTTAIGEAGGDIGAIDLVEQGRDYTVRDITVDAP-------SEEHAETIVAAVRA 63 (74)
T ss_pred EEEEeCCCCchHHHHHHHHHHcCCcEEEEEEEEecCCEEEEEEEEEcC-------CHHHHHHHHHHHhc
Confidence 67899999999999999999999999998887765444 344555432 33666666666654
No 67
>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein. ACT_TyrR: N-terminal ACT domain of the TyrR protein. The TyrR protein of Escherichia coli controls the expression of a group of transcription units (TyrR regulon) whose gene products are involved in the biosynthesis or transport of the aromatic amino acids. Binding to specific DNA sequences known as TyrR boxes, the TyrR protein can either activate or repress transcription at different sigma70 promoters. Its regulatory activity occurs in response to intracellular levels of tyrosine, phenylalanine and tryptophan. The TyrR protein consists of an N-terminal region important for transcription activation with an ATP-independent aromatic amino acid binding site (contained within the ACT domain) and is involved in dimerization; a central region with an ATP binding site, an ATP-dependent aromatic amino acid binding site and is involved in hexamerization; and a helix turn helix DNA binding C-terminal region. In solution, in the absence
Probab=97.49 E-value=0.00068 Score=50.43 Aligned_cols=35 Identities=31% Similarity=0.568 Sum_probs=32.8
Q ss_pred EEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEec
Q 022480 219 LLYIETADRPGLLVEIMKIIADVNVDVESAEIDTE 253 (296)
Q Consensus 219 vleV~t~DRPGLL~dIt~~La~~gv~I~~AkI~T~ 253 (296)
.|+|.+.||+|+|++|+++|++.|+||.+.++.+.
T Consensus 2 ~l~I~~~dr~Gll~dI~~~i~~~~~nI~~~~~~~~ 36 (74)
T cd04877 2 RLEITCEDRLGITQEVLDLLVEHNIDLRGIEIDPK 36 (74)
T ss_pred EEEEEEEccchHHHHHHHHHHHCCCceEEEEEecC
Confidence 47899999999999999999999999999999875
No 68
>COG3830 ACT domain-containing protein [Signal transduction mechanisms]
Probab=97.48 E-value=0.00015 Score=56.48 Aligned_cols=35 Identities=17% Similarity=0.420 Sum_probs=31.8
Q ss_pred cEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEE
Q 022480 217 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEID 251 (296)
Q Consensus 217 ~TvleV~t~DRPGLL~dIt~~La~~gv~I~~AkI~ 251 (296)
..+|+|.+.||||+.+.|+++|+++|+||....=+
T Consensus 3 ~avITV~GkDr~GIva~is~vLAe~~vNIldisQt 37 (90)
T COG3830 3 RAVITVIGKDRVGIVAAVSRVLAEHGVNILDISQT 37 (90)
T ss_pred eEEEEEEcCCCCchhHHHHHHHHHcCCcEEEHHHH
Confidence 57999999999999999999999999999886543
No 69
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=97.47 E-value=0.00039 Score=65.50 Aligned_cols=42 Identities=14% Similarity=0.085 Sum_probs=36.5
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEE--EeCCeE
Q 022480 101 DATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVN--TEGSVK 142 (296)
Q Consensus 101 ~~t~V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~--T~~~~~ 142 (296)
...+|+|.|+||||+.+.++++|+++|+||.+.+.+ +..+.+
T Consensus 8 ~~~iitv~G~Dr~GIVA~Vs~~Lae~g~NI~disq~~d~~~~~f 51 (289)
T PRK13010 8 PSYVLTLACPSAPGIVAAVSGFLAEKGCYIVELTQFDDDESGRF 51 (289)
T ss_pred cCEEEEEECCCCCCcHHHHHHHHHHCCCCEEecccccccccCcE
Confidence 346899999999999999999999999999999997 334444
No 70
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=97.44 E-value=0.00035 Score=65.73 Aligned_cols=46 Identities=9% Similarity=0.211 Sum_probs=39.5
Q ss_pred cEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCeeeeEEEEE
Q 022480 217 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVS 264 (296)
Q Consensus 217 ~TvleV~t~DRPGLL~dIt~~La~~gv~I~~AkI~T~G~ra~D~F~V~ 264 (296)
.++++|.|+||||++++|+++|+++|+||......|.. ..+.|.++
T Consensus 7 ~~vitv~G~DrpGIVa~VT~~La~~~vNI~dls~~~~~--~~~~F~m~ 52 (286)
T PRK13011 7 TFVLTLSCPSAAGIVAAVTGFLAEHGCYITELHSFDDR--LSGRFFMR 52 (286)
T ss_pred eEEEEEEeCCCCCHHHHHHHHHHhCCCCEEEeeeeecC--CCCeEEEE
Confidence 57899999999999999999999999999999887543 55567665
No 71
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=97.44 E-value=0.0014 Score=47.61 Aligned_cols=46 Identities=13% Similarity=0.320 Sum_probs=38.5
Q ss_pred EEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCeeeeEEEEEe
Q 022480 218 SLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSY 265 (296)
Q Consensus 218 TvleV~t~DRPGLL~dIt~~La~~gv~I~~AkI~T~G~ra~D~F~V~~ 265 (296)
..+.|...|+||.|++|+.+|.++|+||.+..+...++. ..+.+..
T Consensus 2 ~ri~v~v~d~pG~La~v~~~l~~~~inI~~i~~~~~~~~--~~~rl~~ 47 (66)
T cd04908 2 KQLSVFLENKPGRLAAVTEILSEAGINIRALSIADTSEF--GILRLIV 47 (66)
T ss_pred EEEEEEEcCCCChHHHHHHHHHHCCCCEEEEEEEecCCC--CEEEEEE
Confidence 467889999999999999999999999999998766553 5666643
No 72
>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme. The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi
Probab=97.43 E-value=0.002 Score=48.53 Aligned_cols=66 Identities=12% Similarity=0.289 Sum_probs=48.2
Q ss_pred EEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCC-eeeeEEEEEeCCCCCChHHHHHHHHHHHH
Q 022480 218 SLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGL-VAKDKFHVSYGGAALNSSLSQVLVNCLRY 284 (296)
Q Consensus 218 TvleV~t~DRPGLL~dIt~~La~~gv~I~~AkI~T~G~-ra~D~F~V~~~g~~L~~~~~~~L~~~L~~ 284 (296)
+.+.+...|+||.|++|.+.|+++|+||.+......+. ...=.|+|.-+|. ..++..+++.+.|+.
T Consensus 2 ~sl~~~~~d~~G~L~~il~~f~~~~ini~~i~s~p~~~~~~~~~f~vd~~~~-~~~~~~~~~l~~l~~ 68 (80)
T cd04905 2 TSIVFTLPNKPGALYDVLGVFAERGINLTKIESRPSKGGLWEYVFFIDFEGH-IEDPNVAEALEELKR 68 (80)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHCCcCEEEEEEEEcCCCCceEEEEEEEECC-CCCHHHHHHHHHHHH
Confidence 45777889999999999999999999999998766543 3445677865665 333444455555554
No 73
>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.36 E-value=0.0013 Score=47.06 Aligned_cols=34 Identities=29% Similarity=0.575 Sum_probs=30.0
Q ss_pred EEEEeCCCcchHHHHHHHHHhCCceEEEEEEEec
Q 022480 220 LYIETADRPGLLVEIMKIIADVNVDVESAEIDTE 253 (296)
Q Consensus 220 leV~t~DRPGLL~dIt~~La~~gv~I~~AkI~T~ 253 (296)
+.|..+|+||+|++|+++|+++|++|.+......
T Consensus 1 ~~v~~~d~~G~L~~i~~~i~~~~~nI~~i~~~~~ 34 (73)
T cd04886 1 LRVELPDRPGQLAKLLAVIAEAGANIIEVSHDRA 34 (73)
T ss_pred CEEEeCCCCChHHHHHHHHHHcCCCEEEEEEEec
Confidence 4678899999999999999999999998877543
No 74
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=97.35 E-value=0.0013 Score=61.65 Aligned_cols=63 Identities=11% Similarity=0.086 Sum_probs=46.8
Q ss_pred EEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEeC--CeEEEEEEEeecCCCCCCCChHHHHHHHHHHHH
Q 022480 104 IVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEG--SVKQTKFFITRLDTGRKVEDPDLLERIRLTIIN 172 (296)
Q Consensus 104 ~V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~~--~~~~d~F~V~~~~~g~~l~~~~~l~~L~~~L~~ 172 (296)
+|+|.|+||||+.+.++++|+++|+||.+.+.+... +.|.-.+.+.-+ +..+ ..+.|++.|..
T Consensus 2 ~itv~g~D~~GIVA~Vt~~La~~g~NI~d~sq~~~~~~~~F~mr~~v~~~--~~~~----~~~~l~~~l~~ 66 (280)
T TIGR00655 2 ILLVSCPDQKGLVAAISTFIAKHGANIISNDQHTDPETGRFFMRVEFQLE--GFRL----EESSLLAAFKS 66 (280)
T ss_pred EEEEECCCCCChHHHHHHHHHHCCCCEEeeeEEEcCCCCeEEEEEEEEeC--CCCC----CHHHHHHHHHH
Confidence 689999999999999999999999999999999864 555544545432 2111 23566666665
No 75
>cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains. The ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) encoded by the hom gene of Bacillus subtilis and other related sequences. HSDH reduces aspartate semi-aldehyde to the amino acid homoserine, one that is required for the biosynthesis of Met, Thr, and Ile from Asp. Neither the enzyme nor the aspartate pathway is found in the animal kingdom. This mostly bacterial HSDH group has a C-terminal ACT domain and is believed to be involved in enzyme regulation. A C-terminal deletion in the Corynebacterium glutamicum HSDH abolished allosteric inhibition by L-threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.33 E-value=0.0013 Score=47.91 Aligned_cols=62 Identities=18% Similarity=0.229 Sum_probs=43.2
Q ss_pred EEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecC--CeeeeEEEEEeCCCCCChHHHHHHHHHHHH
Q 022480 219 LLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEG--LVAKDKFHVSYGGAALNSSLSQVLVNCLRY 284 (296)
Q Consensus 219 vleV~t~DRPGLL~dIt~~La~~gv~I~~AkI~T~G--~ra~D~F~V~~~g~~L~~~~~~~L~~~L~~ 284 (296)
.|.|.+.|+||+|.+|+++|+++|++|......+.+ +.+.=.|.+ . ..+..+.+++.+.|+.
T Consensus 2 yl~i~~~d~~g~l~~i~~~l~~~~i~I~~~~~~~~~~~~~~~~~i~~-~---~~~~~~l~~~i~~L~~ 65 (79)
T cd04881 2 YLRLTVKDKPGVLAKITGILAEHGISIESVIQKEADGGETAPVVIVT-H---ETSEAALNAALAEIEA 65 (79)
T ss_pred EEEEEeCCCCcHHHHHHHHHHHcCCCeEEEEEcccCCCCceeEEEEE-c---cCCHHHHHHHHHHHHc
Confidence 578999999999999999999999999999876543 333222222 2 1123355666666653
No 76
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH). The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.32 E-value=0.0021 Score=46.69 Aligned_cols=61 Identities=18% Similarity=0.264 Sum_probs=43.5
Q ss_pred EEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecC-C-eeeeEEEEEeCCCCCChHHHHHHHHHHHH
Q 022480 218 SLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEG-L-VAKDKFHVSYGGAALNSSLSQVLVNCLRY 284 (296)
Q Consensus 218 TvleV~t~DRPGLL~dIt~~La~~gv~I~~AkI~T~G-~-ra~D~F~V~~~g~~L~~~~~~~L~~~L~~ 284 (296)
+.+.|..+|+||.|++|++.|+++|++|.+....... + ...-.|.++.. ...+++.+.|++
T Consensus 2 ~~~~v~~~d~~G~L~~l~~~l~~~~i~i~~~~~~~~~~~~~~~~~i~v~~~------~~~~~~~~~L~~ 64 (69)
T cd04909 2 YDLYVDVPDEPGVIAEVTQILGDAGISIKNIEILEIREGIGGILRISFKTQ------EDRERAKEILKE 64 (69)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHcCCCceeeEeEEeecCCcEEEEEEECCH------HHHHHHHHHHHH
Confidence 4678899999999999999999999999998876652 2 33335555321 134456565554
No 77
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate. Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A
Probab=97.29 E-value=0.00092 Score=46.75 Aligned_cols=46 Identities=20% Similarity=0.351 Sum_probs=38.6
Q ss_pred EEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecC-CeeeeEEEEEe
Q 022480 220 LYIETADRPGLLVEIMKIIADVNVDVESAEIDTEG-LVAKDKFHVSY 265 (296)
Q Consensus 220 leV~t~DRPGLL~dIt~~La~~gv~I~~AkI~T~G-~ra~D~F~V~~ 265 (296)
+++...|+||.|.+|+..|.++|+||.+..+...+ +.+.-.|.+.+
T Consensus 1 ~~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~~v~~ 47 (56)
T cd04889 1 LSVFVENKPGRLAEVTEILAEAGINIKAISIAETRGEFGILRLIFSD 47 (56)
T ss_pred CEEEeCCCCChHHHHHHHHHHcCCCEeeEEEEEccCCcEEEEEEECC
Confidence 46789999999999999999999999999987655 66776676643
No 78
>cd04894 ACT_ACR-like_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.28 E-value=0.001 Score=48.45 Aligned_cols=68 Identities=21% Similarity=0.256 Sum_probs=54.9
Q ss_pred EEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCeeeeEEEEEeCCCCCChHHHHHHHHHHHHHc
Q 022480 218 SLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGGAALNSSLSQVLVNCLRYYL 286 (296)
Q Consensus 218 TvleV~t~DRPGLL~dIt~~La~~gv~I~~AkI~T~G~ra~D~F~V~~~g~~L~~~~~~~L~~~L~~~l 286 (296)
++|+|.++|+.||=.||++++.++|++|..+.++|.|.=..=+|-|......+.- .-..|+++|..++
T Consensus 1 tvitvnCPDktGLgcdlcr~il~fGl~i~rgd~sTDGkWCyiv~wVv~~~~~~~~-rW~lLK~RL~~~C 68 (69)
T cd04894 1 SVITINCPDKTGLGCDLCRIILEFGLNITRGDDSTDGRWCYIVFWVVPRPPSIKV-RWDLLKNRLMSAC 68 (69)
T ss_pred CEEEEeCCCccCcccHHHHHHHHhceEEEecccccCCcEEEEEEEEecCCCCCcc-cHHHHHHHHHhcC
Confidence 5789999999999999999999999999999999999988888888653322211 3456777776654
No 79
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=97.25 E-value=0.0015 Score=61.40 Aligned_cols=44 Identities=23% Similarity=0.436 Sum_probs=37.2
Q ss_pred EEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCeeeeEEEEE
Q 022480 219 LLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVS 264 (296)
Q Consensus 219 vleV~t~DRPGLL~dIt~~La~~gv~I~~AkI~T~G~ra~D~F~V~ 264 (296)
+|+|.|+|||||++.|+++|+++|+||....-.+. .-.+.|+++
T Consensus 2 ~itv~g~D~~GIVA~Vt~~La~~g~NI~d~sq~~~--~~~~~F~mr 45 (280)
T TIGR00655 2 ILLVSCPDQKGLVAAISTFIAKHGANIISNDQHTD--PETGRFFMR 45 (280)
T ss_pred EEEEECCCCCChHHHHHHHHHHCCCCEEeeeEEEc--CCCCeEEEE
Confidence 68999999999999999999999999999887765 233466665
No 80
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=97.23 E-value=0.0019 Score=60.84 Aligned_cols=65 Identities=11% Similarity=0.023 Sum_probs=46.8
Q ss_pred eEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEeC--CeEEEEEEEeecCCCCCCCChHHHHHHHHHHHHh
Q 022480 102 ATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEG--SVKQTKFFITRLDTGRKVEDPDLLERIRLTIINN 173 (296)
Q Consensus 102 ~t~V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~~--~~~~d~F~V~~~~~g~~l~~~~~l~~L~~~L~~~ 173 (296)
..+|+|.|+||||+++.++++|+++|+||.+.+..+.. +.|.-.+.+..+ .+. ..+.|++.|...
T Consensus 7 ~~vitv~G~DrpGIVa~VT~~La~~~vNI~dls~~~~~~~~~F~m~~~~~~p-~~~------~~~~L~~~L~~l 73 (286)
T PRK13011 7 TFVLTLSCPSAAGIVAAVTGFLAEHGCYITELHSFDDRLSGRFFMRVEFHSE-EGL------DEDALRAGFAPI 73 (286)
T ss_pred eEEEEEEeCCCCCHHHHHHHHHHhCCCCEEEeeeeecCCCCeEEEEEEEecC-CCC------CHHHHHHHHHHH
Confidence 46899999999999999999999999999999997443 233333444332 221 246667776663
No 81
>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.22 E-value=0.0032 Score=46.30 Aligned_cols=63 Identities=21% Similarity=0.198 Sum_probs=45.1
Q ss_pred EEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecC-CeeeeEEEEEeCCCCCChHHHHHHHHHHHH
Q 022480 219 LLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEG-LVAKDKFHVSYGGAALNSSLSQVLVNCLRY 284 (296)
Q Consensus 219 vleV~t~DRPGLL~dIt~~La~~gv~I~~AkI~T~G-~ra~D~F~V~~~g~~L~~~~~~~L~~~L~~ 284 (296)
.+.|.+.||||+|++|+++|+++|++|......+.. +.+.=.|.+...+. +.++++|.++|+.
T Consensus 2 ~l~i~~~d~~g~l~~I~~~la~~~inI~~i~~~~~~~~~~~i~~~v~v~~~---~~~l~~l~~~L~~ 65 (76)
T cd04888 2 TLSLLLEHRPGVLSKVLNTIAQVRGNVLTINQNIPIHGRANVTISIDTSTM---NGDIDELLEELRE 65 (76)
T ss_pred EEEEEecCCCchHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEEEcCch---HHHHHHHHHHHhc
Confidence 478999999999999999999999999999876543 44445566643221 1145666666653
No 82
>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active
Probab=97.21 E-value=0.0026 Score=45.16 Aligned_cols=44 Identities=18% Similarity=0.357 Sum_probs=37.2
Q ss_pred EEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecC--CeeeeEEEE
Q 022480 220 LYIETADRPGLLVEIMKIIADVNVDVESAEIDTEG--LVAKDKFHV 263 (296)
Q Consensus 220 leV~t~DRPGLL~dIt~~La~~gv~I~~AkI~T~G--~ra~D~F~V 263 (296)
+.+.+.|+||+|++|+++|+++|++|.+..+...+ +...-.|.+
T Consensus 2 l~v~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~~~~~~~~~v 47 (71)
T cd04879 2 LLIVHKDVPGVIGKVGTILGEHGINIAAMQVGRKEKGGIAYMVLDV 47 (71)
T ss_pred EEEEecCCCCHHHHHHHHHHhcCCCeeeEEEeccCCCCEEEEEEEc
Confidence 67899999999999999999999999999997754 445555555
No 83
>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of
Probab=97.21 E-value=0.0038 Score=44.53 Aligned_cols=61 Identities=20% Similarity=0.304 Sum_probs=43.2
Q ss_pred EEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEec-C-CeeeeEEEEEeCCCCCChHHHHHHHHHHHH
Q 022480 219 LLYIETADRPGLLVEIMKIIADVNVDVESAEIDTE-G-LVAKDKFHVSYGGAALNSSLSQVLVNCLRY 284 (296)
Q Consensus 219 vleV~t~DRPGLL~dIt~~La~~gv~I~~AkI~T~-G-~ra~D~F~V~~~g~~L~~~~~~~L~~~L~~ 284 (296)
.+.+.+.|+||+|.+|+++|+++|++|.+....+. + +.+.=.|.+ + .. + +..+.+.+.|+.
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~-~-~~--~-~~~~~l~~~l~~ 64 (72)
T cd04878 2 TLSVLVENEPGVLNRISGLFARRGFNIESLTVGPTEDPGISRITIVV-E-GD--D-DVIEQIVKQLNK 64 (72)
T ss_pred EEEEEEcCCCcHHHHHHHHHHhCCCCEEEEEeeecCCCCeEEEEEEE-E-CC--H-HHHHHHHHHHhC
Confidence 46788999999999999999999999999998775 3 333333333 2 21 2 345566666654
No 84
>COG3830 ACT domain-containing protein [Signal transduction mechanisms]
Probab=97.19 E-value=0.00049 Score=53.71 Aligned_cols=49 Identities=10% Similarity=0.185 Sum_probs=40.9
Q ss_pred eEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEeCCeEEEEEEEee
Q 022480 102 ATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITR 150 (296)
Q Consensus 102 ~t~V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~~~~~~d~F~V~~ 150 (296)
..+|+|.|.||||+.+.++++|+++|+||++-...-..+.+--.+.|.-
T Consensus 3 ~avITV~GkDr~GIva~is~vLAe~~vNIldisQtvm~~~ftm~~lV~~ 51 (90)
T COG3830 3 RAVITVIGKDRVGIVAAVSRVLAEHGVNILDISQTVMDGFFTMIMLVDI 51 (90)
T ss_pred eEEEEEEcCCCCchhHHHHHHHHHcCCcEEEHHHHHHhhhceeeeEEcC
Confidence 4689999999999999999999999999999887777777654454543
No 85
>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.17 E-value=0.0045 Score=44.25 Aligned_cols=34 Identities=15% Similarity=0.368 Sum_probs=30.2
Q ss_pred EEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEe
Q 022480 105 VQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTE 138 (296)
Q Consensus 105 V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~ 138 (296)
+.|..+|+||+|++++.+|+++|+||.+......
T Consensus 1 ~~v~~~d~~G~L~~i~~~i~~~~~nI~~i~~~~~ 34 (73)
T cd04886 1 LRVELPDRPGQLAKLLAVIAEAGANIIEVSHDRA 34 (73)
T ss_pred CEEEeCCCCChHHHHHHHHHHcCCCEEEEEEEec
Confidence 3578899999999999999999999998877654
No 86
>CHL00100 ilvH acetohydroxyacid synthase small subunit
Probab=97.14 E-value=0.0027 Score=55.65 Aligned_cols=35 Identities=23% Similarity=0.373 Sum_probs=33.0
Q ss_pred EEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEe
Q 022480 218 SLLYIETADRPGLLVEIMKIIADVNVDVESAEIDT 252 (296)
Q Consensus 218 TvleV~t~DRPGLL~dIt~~La~~gv~I~~AkI~T 252 (296)
..+.|.+.|+||+|++|+.+|+++|+||.+..+..
T Consensus 3 ~~isvlv~n~PGVL~RIt~lFsrRg~NIesLsv~~ 37 (174)
T CHL00100 3 HTLSVLVEDESGVLTRIAGLFARRGFNIESLAVGP 37 (174)
T ss_pred EEEEEEEeCcCCHHHHHHHHHHhCCCCeeEEEeeE
Confidence 47899999999999999999999999999999965
No 87
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.13 E-value=0.0025 Score=45.26 Aligned_cols=49 Identities=24% Similarity=0.326 Sum_probs=36.2
Q ss_pred EEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCeeeeEEEEEeCC
Q 022480 219 LLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGG 267 (296)
Q Consensus 219 vleV~t~DRPGLL~dIt~~La~~gv~I~~AkI~T~G~ra~D~F~V~~~g 267 (296)
++.|..+||||-|++|+.+|+++|+||.+......+......++++-++
T Consensus 1 ~i~v~~~d~pG~L~~i~~~l~~~~~nI~~i~~~~~~~~~~~~v~~~ve~ 49 (65)
T cd04882 1 VLAVEVPDKPGGLHEILQILSEEGINIEYMYAFVEKKGGKALLIFRTED 49 (65)
T ss_pred CEEEEeCCCCcHHHHHHHHHHHCCCChhheEEEccCCCCeEEEEEEeCC
Confidence 4678899999999999999999999999888755442223334444333
No 88
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=97.12 E-value=0.0024 Score=60.25 Aligned_cols=46 Identities=11% Similarity=0.195 Sum_probs=37.9
Q ss_pred cEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCeeeeEEEEE
Q 022480 217 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVS 264 (296)
Q Consensus 217 ~TvleV~t~DRPGLL~dIt~~La~~gv~I~~AkI~T~G~ra~D~F~V~ 264 (296)
.++|+|.|+|||||++.|+++|+++|+||....-.+ +...+.|+.+
T Consensus 9 ~~iitv~G~Dr~GIVA~Vs~~Lae~g~NI~disq~~--d~~~~~ffm~ 54 (289)
T PRK13010 9 SYVLTLACPSAPGIVAAVSGFLAEKGCYIVELTQFD--DDESGRFFMR 54 (289)
T ss_pred CEEEEEECCCCCCcHHHHHHHHHHCCCCEEeccccc--ccccCcEEEE
Confidence 579999999999999999999999999999988763 2334445544
No 89
>TIGR00119 acolac_sm acetolactate synthase, small subunit. acetohydroxyacid synthase is a synonym.
Probab=97.11 E-value=0.0035 Score=54.05 Aligned_cols=67 Identities=12% Similarity=0.257 Sum_probs=48.4
Q ss_pred EEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCeeeeEEEEEeCCCCCChHHHHHHHHHHHHHcC
Q 022480 218 SLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGGAALNSSLSQVLVNCLRYYLR 287 (296)
Q Consensus 218 TvleV~t~DRPGLL~dIt~~La~~gv~I~~AkI~T~G~ra~D~F~V~~~g~~L~~~~~~~L~~~L~~~l~ 287 (296)
.++.|...|+||.|++|+..|+++|+||.+.-+...++...-.+.++=+| ++...++|.+.|.+.+.
T Consensus 2 ~~isI~ven~pGvL~rI~~lf~rrg~NI~Sl~v~~t~~~~~sriti~V~~---d~~~i~qi~kQl~Kli~ 68 (157)
T TIGR00119 2 HILSVLVENEPGVLSRVAGLFTRRGFNIESLTVGPTEDPDLSRMTIVVVG---DDKVLEQITKQLNKLVD 68 (157)
T ss_pred EEEEEEEcCCCcHHHHHHHHHHhCCceEEEEEEeecCCCCEEEEEEEEEC---CHHHHHHHHHHHhcCcc
Confidence 46889999999999999999999999999998865543333333333234 23456777777776543
No 90
>PRK06737 acetolactate synthase 1 regulatory subunit; Validated
Probab=97.09 E-value=0.004 Score=47.33 Aligned_cols=65 Identities=14% Similarity=0.179 Sum_probs=45.8
Q ss_pred EEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEE-ecCCeeeeEEEEEeCCCCCChHHHHHHHHHHHHHc
Q 022480 218 SLLYIETADRPGLLVEIMKIIADVNVDVESAEID-TEGLVAKDKFHVSYGGAALNSSLSQVLVNCLRYYL 286 (296)
Q Consensus 218 TvleV~t~DRPGLL~dIt~~La~~gv~I~~AkI~-T~G~ra~D~F~V~~~g~~L~~~~~~~L~~~L~~~l 286 (296)
..+.+...|+||.|++|+..|+..|+||.+..+. |+.....-+-.+.. | ++...++|.+.|.+.+
T Consensus 3 ~tisi~v~n~pGVL~Ri~~lf~rRgfNI~Sl~vg~te~~~~sriti~~~-~---~~~~i~qi~kQL~KLi 68 (76)
T PRK06737 3 HTFSLVIHNDPSVLLRISGIFARRGYYISSLNLNERDTSGVSEMKLTAV-C---TENEATLLVSQLKKLI 68 (76)
T ss_pred EEEEEEEecCCCHHHHHHHHHhccCcceEEEEecccCCCCeeEEEEEEE-C---CHHHHHHHHHHHhCCc
Confidence 4688999999999999999999999999999986 44333333323322 2 1224567777766544
No 91
>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional
Probab=97.03 E-value=0.0039 Score=48.24 Aligned_cols=65 Identities=15% Similarity=0.134 Sum_probs=48.6
Q ss_pred EEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEeCCeEEEEEEEeecCCCCCCCChHHHHHHHHHHHH
Q 022480 103 TIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIIN 172 (296)
Q Consensus 103 t~V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~~~~~~d~F~V~~~~~g~~l~~~~~l~~L~~~L~~ 172 (296)
..+.+...|+||.|++++++|+..|+||.+-.+..+.+.-+-.+.+.-. .| +++.+++|.+.|..
T Consensus 3 ~~isvlVeN~~GVL~Rit~lFsRRg~NI~SLtvg~Te~~~iSRmtivv~-~~----d~~~ieqI~kQL~K 67 (84)
T PRK13562 3 RILKLQVADQVSTLNRITSAFVRLQYNIDTLHVTHSEQPGISNMEIQVD-IQ----DDTSLHILIKKLKQ 67 (84)
T ss_pred EEEEEEEECCCCHHHHHHHHHhccCcCeeeEEecccCCCCceEEEEEEe-CC----CHHHHHHHHHHHhC
Confidence 3689999999999999999999999999999998876633323333321 13 34677777777765
No 92
>PRK08178 acetolactate synthase 1 regulatory subunit; Reviewed
Probab=97.00 E-value=0.0056 Score=48.49 Aligned_cols=66 Identities=9% Similarity=0.101 Sum_probs=47.4
Q ss_pred CcEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCe-eeeEEEEEeCCCCCChHHHHHHHHHHHHHc
Q 022480 216 KRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLV-AKDKFHVSYGGAALNSSLSQVLVNCLRYYL 286 (296)
Q Consensus 216 ~~TvleV~t~DRPGLL~dIt~~La~~gv~I~~AkI~T~G~r-a~D~F~V~~~g~~L~~~~~~~L~~~L~~~l 286 (296)
...+|.+...|+||+|++|+-.|++.|+||++..+.-.+.. ..-+..+.. + +...+++.+.|.+..
T Consensus 7 ~~~tisvlv~N~pGVL~RIaglFsRRgyNIeSLtvg~te~~~iSRmtivv~-~----~~~i~Qi~kQL~KLi 73 (96)
T PRK08178 7 DNVILELTVRNHPGVMSHVCGLFARRAFNVEGILCLPIQDGDKSRIWLLVN-D----DQRLEQMISQIEKLE 73 (96)
T ss_pred CCEEEEEEEECCcCHHHHHHHHHhcCCcCeeeEEEeecCCCCceEEEEEEc-C----chHHHHHHHHHhCCc
Confidence 45779999999999999999999999999999998644433 333332322 2 235567777766554
No 93
>PRK06737 acetolactate synthase 1 regulatory subunit; Validated
Probab=97.00 E-value=0.0053 Score=46.64 Aligned_cols=64 Identities=8% Similarity=0.068 Sum_probs=46.6
Q ss_pred EEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEeCCeEEEEEEEeecCCCCCCCChHHHHHHHHHHHH
Q 022480 103 TIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIIN 172 (296)
Q Consensus 103 t~V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~~~~~~d~F~V~~~~~g~~l~~~~~l~~L~~~L~~ 172 (296)
..+.+...|+||.|++++++|+..|+||.+-.+..+.+.-+-.+.++- .| +++.+++|.++|..
T Consensus 3 ~tisi~v~n~pGVL~Ri~~lf~rRgfNI~Sl~vg~te~~~~sriti~~--~~----~~~~i~qi~kQL~K 66 (76)
T PRK06737 3 HTFSLVIHNDPSVLLRISGIFARRGYYISSLNLNERDTSGVSEMKLTA--VC----TENEATLLVSQLKK 66 (76)
T ss_pred EEEEEEEecCCCHHHHHHHHHhccCcceEEEEecccCCCCeeEEEEEE--EC----CHHHHHHHHHHHhC
Confidence 468999999999999999999999999999888755543222233332 12 23666777777665
No 94
>PRK08178 acetolactate synthase 1 regulatory subunit; Reviewed
Probab=96.99 E-value=0.0054 Score=48.61 Aligned_cols=66 Identities=12% Similarity=0.147 Sum_probs=49.2
Q ss_pred CCeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEeCCeEEEEEEEeecCCCCCCCChHHHHHHHHHHHH
Q 022480 100 SDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIIN 172 (296)
Q Consensus 100 ~~~t~V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~~~~~~d~F~V~~~~~g~~l~~~~~l~~L~~~L~~ 172 (296)
.+...+.++..|+||.|++++++|+..|+||.+-.+..+.+.-+-.+.+.-. + ++.+++|.+.|..
T Consensus 6 ~~~~tisvlv~N~pGVL~RIaglFsRRgyNIeSLtvg~te~~~iSRmtivv~--~-----~~~i~Qi~kQL~K 71 (96)
T PRK08178 6 HDNVILELTVRNHPGVMSHVCGLFARRAFNVEGILCLPIQDGDKSRIWLLVN--D-----DQRLEQMISQIEK 71 (96)
T ss_pred CCCEEEEEEEECCcCHHHHHHHHHhcCCcCeeeEEEeecCCCCceEEEEEEc--C-----chHHHHHHHHHhC
Confidence 3446799999999999999999999999999999988776643333333331 1 2566777777665
No 95
>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit. The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.97 E-value=0.0067 Score=43.18 Aligned_cols=33 Identities=18% Similarity=0.521 Sum_probs=30.4
Q ss_pred EEEEeCCCcchHHHHHHHHHhCCceEEEEEEEe
Q 022480 220 LYIETADRPGLLVEIMKIIADVNVDVESAEIDT 252 (296)
Q Consensus 220 leV~t~DRPGLL~dIt~~La~~gv~I~~AkI~T 252 (296)
+.+.+.|+||.|.+|++.|+++|++|.+.....
T Consensus 2 l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~ 34 (71)
T cd04903 2 LIVVHKDKPGAIAKVTSVLADHEINIAFMRVSR 34 (71)
T ss_pred EEEEeCCCCChHHHHHHHHHHcCcCeeeeEEEe
Confidence 578899999999999999999999999998765
No 96
>cd04902 ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). The C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with an extended C-terminal (xct) region from bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. Some 3PGDH enzymes have an additional domain formed by an extended C-terminal region. This additional domain introduces significant asymmetry to the homotetramer. Adjacent ACT (regulatory) domains interact, creating two serine-binding sites, however, this asymmetric arrangement results in the formation of two different and distinct domain interfaces between iden
Probab=96.94 E-value=0.0047 Score=44.86 Aligned_cols=44 Identities=20% Similarity=0.434 Sum_probs=34.7
Q ss_pred EEEEeCCCcchHHHHHHHHHhCCceEEEEEEEe--cCCeeeeEEEE
Q 022480 220 LYIETADRPGLLVEIMKIIADVNVDVESAEIDT--EGLVAKDKFHV 263 (296)
Q Consensus 220 leV~t~DRPGLL~dIt~~La~~gv~I~~AkI~T--~G~ra~D~F~V 263 (296)
+-+...|+||.+++|++.|+++|+||.+..... .++.+.=+|.+
T Consensus 2 l~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~i~v 47 (73)
T cd04902 2 LVVRNTDRPGVIGKVGTILGEAGINIAGMQVGRDEPGGEALMVLSV 47 (73)
T ss_pred EEEEeCCCCCHHHHHHHHHHHcCcChhheEeeccCCCCEEEEEEEe
Confidence 456899999999999999999999999988754 34455444444
No 97
>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein. ACT_TyrR: N-terminal ACT domain of the TyrR protein. The TyrR protein of Escherichia coli controls the expression of a group of transcription units (TyrR regulon) whose gene products are involved in the biosynthesis or transport of the aromatic amino acids. Binding to specific DNA sequences known as TyrR boxes, the TyrR protein can either activate or repress transcription at different sigma70 promoters. Its regulatory activity occurs in response to intracellular levels of tyrosine, phenylalanine and tryptophan. The TyrR protein consists of an N-terminal region important for transcription activation with an ATP-independent aromatic amino acid binding site (contained within the ACT domain) and is involved in dimerization; a central region with an ATP binding site, an ATP-dependent aromatic amino acid binding site and is involved in hexamerization; and a helix turn helix DNA binding C-terminal region. In solution, in the absence
Probab=96.92 E-value=0.0055 Score=45.51 Aligned_cols=35 Identities=17% Similarity=0.377 Sum_probs=32.6
Q ss_pred EEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEe
Q 022480 104 IVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTE 138 (296)
Q Consensus 104 ~V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~ 138 (296)
.+.|.+.||+|++++|+.++++.|+||.+..+.+.
T Consensus 2 ~l~I~~~dr~Gll~dI~~~i~~~~~nI~~~~~~~~ 36 (74)
T cd04877 2 RLEITCEDRLGITQEVLDLLVEHNIDLRGIEIDPK 36 (74)
T ss_pred EEEEEEEccchHHHHHHHHHHHCCCceEEEEEecC
Confidence 47899999999999999999999999999999775
No 98
>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe. In PAH, an autoregulatory sequence, N-terminal of the ACT domain, extends across the catalytic domain active site and regulates the enzyme by intrasteric regulation. It appears that the activation by L-Phe induces a conformational change that converts the enzyme to a high-affinity and high-activity state. Modulation of activity is achieved through inhibition by BH4 and activation by phosphorylation of serine residues of the autoregulatory region. The molecular basis for the cooperative activation process is not fully understood yet. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.92 E-value=0.013 Score=45.82 Aligned_cols=70 Identities=11% Similarity=0.236 Sum_probs=52.6
Q ss_pred CcEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCe-eeeEEEEEeCCCCCChHHHHHHHHHHHHHcC
Q 022480 216 KRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLV-AKDKFHVSYGGAALNSSLSQVLVNCLRYYLR 287 (296)
Q Consensus 216 ~~TvleV~t~DRPGLL~dIt~~La~~gv~I~~AkI~T~G~r-a~D~F~V~~~g~~L~~~~~~~L~~~L~~~l~ 287 (296)
..+.|-+...|+||-|+++.+.|+++|||+.+.+-...... -.=.|||.-+|+ . ++..+++.+.|+..|.
T Consensus 13 ~ktslif~l~~~pGsL~~vL~~Fa~~~INLt~IeSRP~~~~~~~Y~FfVDieg~-~-~~~~~~~l~~L~~~~~ 83 (90)
T cd04931 13 GVISLIFSLKEEVGALAKVLRLFEEKDINLTHIESRPSRLNKDEYEFFINLDKK-S-APALDPIIKSLRNDIG 83 (90)
T ss_pred CcEEEEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEEEcC-C-CHHHHHHHHHHHHHhC
Confidence 35777778899999999999999999999999998765444 444788865776 2 4444555566666655
No 99
>PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed
Probab=96.91 E-value=0.0068 Score=52.48 Aligned_cols=67 Identities=12% Similarity=0.257 Sum_probs=46.4
Q ss_pred EEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCeeeeEEEEEeCCCCCChHHHHHHHHHHHHHcC
Q 022480 218 SLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGGAALNSSLSQVLVNCLRYYLR 287 (296)
Q Consensus 218 TvleV~t~DRPGLL~dIt~~La~~gv~I~~AkI~T~G~ra~D~F~V~~~g~~L~~~~~~~L~~~L~~~l~ 287 (296)
.++.|...|+||.|++|+..|+++|+||.+..+....+...-.+.++-+| ++...+++...|.+.+.
T Consensus 3 ~~IsV~veN~pGvL~rI~~lf~rrg~NI~Sl~v~~te~~~~sriti~V~~---~~~~i~qi~kQl~KLid 69 (161)
T PRK11895 3 HTLSVLVENEPGVLSRVAGLFSRRGYNIESLTVGPTEDPGLSRMTIVTSG---DEQVIEQITKQLNKLID 69 (161)
T ss_pred EEEEEEEcCCCcHHHHHHHHHHhCCCcEEEEEeeecCCCCEEEEEEEEEC---CHHHHHHHHHHHhcccc
Confidence 47889999999999999999999999999998764432222223332233 23355677777665543
No 100
>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]
Probab=96.89 E-value=0.0026 Score=58.97 Aligned_cols=39 Identities=18% Similarity=0.252 Sum_probs=35.9
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEeC
Q 022480 101 DATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEG 139 (296)
Q Consensus 101 ~~t~V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~~ 139 (296)
...++++.|+|++|+.+.|++.|+++||||.++..++..
T Consensus 6 ~~~~LtvsCpd~~GiVaais~~l~~~g~NI~~~~qf~D~ 44 (287)
T COG0788 6 DTFILTVSCPDQPGIVAAISGFLAEHGCNIVDSDQFDDP 44 (287)
T ss_pred cceEEEEecCCCCCcHHHHHHHHHHcCCceeeccccccc
Confidence 457999999999999999999999999999999999653
No 101
>cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains. The ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) encoded by the hom gene of Bacillus subtilis and other related sequences. HSDH reduces aspartate semi-aldehyde to the amino acid homoserine, one that is required for the biosynthesis of Met, Thr, and Ile from Asp. Neither the enzyme nor the aspartate pathway is found in the animal kingdom. This mostly bacterial HSDH group has a C-terminal ACT domain and is believed to be involved in enzyme regulation. A C-terminal deletion in the Corynebacterium glutamicum HSDH abolished allosteric inhibition by L-threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.86 E-value=0.01 Score=43.07 Aligned_cols=63 Identities=14% Similarity=0.185 Sum_probs=42.7
Q ss_pred EEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEeCC-eEEEEEEEeecCCCCCCCChHHHHHHHHHHHH
Q 022480 104 IVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGS-VKQTKFFITRLDTGRKVEDPDLLERIRLTIIN 172 (296)
Q Consensus 104 ~V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~~~-~~~d~F~V~~~~~g~~l~~~~~l~~L~~~L~~ 172 (296)
-+.|.+.|++|++++++.+|.++|+||.........+ +......++.. .+...++.+.+.|.+
T Consensus 2 yl~i~~~d~~g~l~~i~~~l~~~~i~I~~~~~~~~~~~~~~~~~i~~~~------~~~~~l~~~i~~L~~ 65 (79)
T cd04881 2 YLRLTVKDKPGVLAKITGILAEHGISIESVIQKEADGGETAPVVIVTHE------TSEAALNAALAEIEA 65 (79)
T ss_pred EEEEEeCCCCcHHHHHHHHHHHcCCCeEEEEEcccCCCCceeEEEEEcc------CCHHHHHHHHHHHHc
Confidence 4678899999999999999999999999988765533 33332333321 123455555555543
No 102
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=96.84 E-value=0.01 Score=42.92 Aligned_cols=39 Identities=10% Similarity=0.268 Sum_probs=35.1
Q ss_pred EEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEeCCe
Q 022480 103 TIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSV 141 (296)
Q Consensus 103 t~V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~~~~ 141 (296)
..+.|..+|+||.|++++.+|.++|+||....++..++.
T Consensus 2 ~ri~v~v~d~pG~La~v~~~l~~~~inI~~i~~~~~~~~ 40 (66)
T cd04908 2 KQLSVFLENKPGRLAAVTEILSEAGINIRALSIADTSEF 40 (66)
T ss_pred EEEEEEEcCCCChHHHHHHHHHHCCCCEEEEEEEecCCC
Confidence 367889999999999999999999999999998887663
No 103
>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional
Probab=96.78 E-value=0.0086 Score=46.34 Aligned_cols=66 Identities=11% Similarity=0.232 Sum_probs=46.1
Q ss_pred EEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCeeeeEEEEEeC-CCCCChHHHHHHHHHHHHHc
Q 022480 218 SLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSYG-GAALNSSLSQVLVNCLRYYL 286 (296)
Q Consensus 218 TvleV~t~DRPGLL~dIt~~La~~gv~I~~AkI~T~G~ra~D~F~V~~~-g~~L~~~~~~~L~~~L~~~l 286 (296)
.++.+...|+||.|++|+..|.+.|+||.+..+........-.+-+.-+ |. +...+++.+.|.+.+
T Consensus 3 ~~isvlVeN~~GVL~Rit~lFsRRg~NI~SLtvg~Te~~~iSRmtivv~~~d---~~~ieqI~kQL~Kli 69 (84)
T PRK13562 3 RILKLQVADQVSTLNRITSAFVRLQYNIDTLHVTHSEQPGISNMEIQVDIQD---DTSLHILIKKLKQQI 69 (84)
T ss_pred EEEEEEEECCCCHHHHHHHHHhccCcCeeeEEecccCCCCceEEEEEEeCCC---HHHHHHHHHHHhCCc
Confidence 3688889999999999999999999999999996433333333333222 32 224567777776554
No 104
>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of
Probab=96.78 E-value=0.018 Score=40.97 Aligned_cols=40 Identities=13% Similarity=0.134 Sum_probs=34.3
Q ss_pred EEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEe-CCeEE
Q 022480 104 IVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTE-GSVKQ 143 (296)
Q Consensus 104 ~V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~-~~~~~ 143 (296)
.+.+.+.|++|++.+++.+|+++|+||......+. +++..
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~ 42 (72)
T cd04878 2 TLSVLVENEPGVLNRISGLFARRGFNIESLTVGPTEDPGIS 42 (72)
T ss_pred EEEEEEcCCCcHHHHHHHHHHhCCCCEEEEEeeecCCCCeE
Confidence 46788999999999999999999999999998776 44443
No 105
>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.77 E-value=0.014 Score=42.82 Aligned_cols=62 Identities=13% Similarity=0.095 Sum_probs=44.2
Q ss_pred EEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEeCCe-EEEEEEEeecCCCCCCCChH-HHHHHHHHHHH
Q 022480 104 IVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSV-KQTKFFITRLDTGRKVEDPD-LLERIRLTIIN 172 (296)
Q Consensus 104 ~V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~~~~-~~d~F~V~~~~~g~~l~~~~-~l~~L~~~L~~ 172 (296)
.+.|.+.|+||++++++++|+++|.||......+..++ +.-.|.+... + .+ .+++|-+.|++
T Consensus 2 ~l~i~~~d~~g~l~~I~~~la~~~inI~~i~~~~~~~~~~~i~~~v~v~--~-----~~~~l~~l~~~L~~ 65 (76)
T cd04888 2 TLSLLLEHRPGVLSKVLNTIAQVRGNVLTINQNIPIHGRANVTISIDTS--T-----MNGDIDELLEELRE 65 (76)
T ss_pred EEEEEecCCCchHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEEEcC--c-----hHHHHHHHHHHHhc
Confidence 57899999999999999999999999999877554433 3333555432 1 23 56666666654
No 106
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate. Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A
Probab=96.77 E-value=0.0061 Score=42.51 Aligned_cols=45 Identities=9% Similarity=0.269 Sum_probs=36.6
Q ss_pred EEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEeC-CeEEEEEEEe
Q 022480 105 VQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEG-SVKQTKFFIT 149 (296)
Q Consensus 105 V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~~-~~~~d~F~V~ 149 (296)
+.|..+|+||.+++++++|.++|+||....++..+ +..+-.|.+.
T Consensus 1 ~~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~~v~ 46 (56)
T cd04889 1 LSVFVENKPGRLAEVTEILAEAGINIKAISIAETRGEFGILRLIFS 46 (56)
T ss_pred CEEEeCCCCChHHHHHHHHHHcCCCEeeEEEEEccCCcEEEEEEEC
Confidence 35788999999999999999999999999988876 3334445443
No 107
>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, and related domains. This CD includes the N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, from Archaeoglobus fulgidus and other related archeal ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.74 E-value=0.014 Score=41.70 Aligned_cols=35 Identities=26% Similarity=0.396 Sum_probs=31.9
Q ss_pred EEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEec
Q 022480 219 LLYIETADRPGLLVEIMKIIADVNVDVESAEIDTE 253 (296)
Q Consensus 219 vleV~t~DRPGLL~dIt~~La~~gv~I~~AkI~T~ 253 (296)
.+.+.+.|+||.|++|++.|.++|++|.+....+.
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~ 36 (72)
T cd04874 2 ALSIIAEDKPGVLRDLTGVIAEHGGNITYTQQFIE 36 (72)
T ss_pred eEEEEeCCCCChHHHHHHHHHhCCCCEEEEEEecc
Confidence 47789999999999999999999999998887665
No 108
>TIGR00119 acolac_sm acetolactate synthase, small subunit. acetohydroxyacid synthase is a synonym.
Probab=96.74 E-value=0.014 Score=50.24 Aligned_cols=63 Identities=17% Similarity=0.254 Sum_probs=48.3
Q ss_pred EEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEeC-CeEE-EEEEEeecCCCCCCCChHHHHHHHHHHHHh
Q 022480 103 TIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEG-SVKQ-TKFFITRLDTGRKVEDPDLLERIRLTIINN 173 (296)
Q Consensus 103 t~V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~~-~~~~-d~F~V~~~~~g~~l~~~~~l~~L~~~L~~~ 173 (296)
..+.|...|+||.|++++++|++.|+||.+-.+.... ++.. -+|.+. | ++..++.|.++|...
T Consensus 2 ~~isI~ven~pGvL~rI~~lf~rrg~NI~Sl~v~~t~~~~~sriti~V~----~----d~~~i~qi~kQl~Kl 66 (157)
T TIGR00119 2 HILSVLVENEPGVLSRVAGLFTRRGFNIESLTVGPTEDPDLSRMTIVVV----G----DDKVLEQITKQLNKL 66 (157)
T ss_pred EEEEEEEcCCCcHHHHHHHHHHhCCceEEEEEEeecCCCCEEEEEEEEE----C----CHHHHHHHHHHHhcC
Confidence 3688999999999999999999999999999988876 3443 334342 2 236677888877763
No 109
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH). The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.74 E-value=0.016 Score=41.99 Aligned_cols=37 Identities=14% Similarity=0.184 Sum_probs=33.3
Q ss_pred EEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEeC
Q 022480 103 TIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEG 139 (296)
Q Consensus 103 t~V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~~ 139 (296)
..+.|..+|+||.|+++++.|+++|+||.........
T Consensus 2 ~~~~v~~~d~~G~L~~l~~~l~~~~i~i~~~~~~~~~ 38 (69)
T cd04909 2 YDLYVDVPDEPGVIAEVTQILGDAGISIKNIEILEIR 38 (69)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHcCCCceeeEeEEee
Confidence 4688899999999999999999999999988877763
No 110
>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional
Probab=96.72 E-value=0.012 Score=44.66 Aligned_cols=63 Identities=16% Similarity=0.200 Sum_probs=45.9
Q ss_pred EEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEe-c-CCeeeeEEEEEeCCCCCChHHHHHHHHHHHHHc
Q 022480 218 SLLYIETADRPGLLVEIMKIIADVNVDVESAEIDT-E-GLVAKDKFHVSYGGAALNSSLSQVLVNCLRYYL 286 (296)
Q Consensus 218 TvleV~t~DRPGLL~dIt~~La~~gv~I~~AkI~T-~-G~ra~D~F~V~~~g~~L~~~~~~~L~~~L~~~l 286 (296)
..+.+...|+||.|.+|+..|+..|+||.+..+.- . ++...=.+.+ .+ +...++|.+.|.+.+
T Consensus 4 ~~lsi~v~n~pGVL~Ri~~lf~rRGfnI~sl~v~~t~~~~~sriti~v-~~-----~~~i~ql~kQL~KL~ 68 (76)
T PRK11152 4 HQLTIKARFRPEVLERVLRVVRHRGFQVCSMNMTQNTDAQNINIELTV-AS-----ERPIDLLSSQLNKLV 68 (76)
T ss_pred EEEEEEEECCccHHHHHHHHHhcCCeeeeeEEeeecCCCCEEEEEEEE-CC-----CchHHHHHHHHhcCc
Confidence 57899999999999999999999999999999964 3 3333334444 22 224566777666544
No 111
>PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed
Probab=96.71 E-value=0.016 Score=50.17 Aligned_cols=63 Identities=14% Similarity=0.202 Sum_probs=48.3
Q ss_pred EEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEeC-CeEE-EEEEEeecCCCCCCCChHHHHHHHHHHHHh
Q 022480 103 TIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEG-SVKQ-TKFFITRLDTGRKVEDPDLLERIRLTIINN 173 (296)
Q Consensus 103 t~V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~~-~~~~-d~F~V~~~~~g~~l~~~~~l~~L~~~L~~~ 173 (296)
..+.|...|+||.|++++++|+.+|+||.+-.+.... ++.. -+|.+. | +++.+++|.++|...
T Consensus 3 ~~IsV~veN~pGvL~rI~~lf~rrg~NI~Sl~v~~te~~~~sriti~V~----~----~~~~i~qi~kQl~KL 67 (161)
T PRK11895 3 HTLSVLVENEPGVLSRVAGLFSRRGYNIESLTVGPTEDPGLSRMTIVTS----G----DEQVIEQITKQLNKL 67 (161)
T ss_pred EEEEEEEcCCCcHHHHHHHHHHhCCCcEEEEEeeecCCCCEEEEEEEEE----C----CHHHHHHHHHHHhcc
Confidence 4688999999999999999999999999999887775 3443 233332 2 236778888887764
No 112
>cd04901 ACT_3PGDH C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. The C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In Escherichia coli, the SerA 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. In the homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active site is postulated to involve the tethering of the regulatory domains together to create a rigid quaternary structure with a solvent-
Probab=96.70 E-value=0.0021 Score=46.33 Aligned_cols=44 Identities=20% Similarity=0.379 Sum_probs=34.7
Q ss_pred EEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCeeeeEEEE
Q 022480 220 LYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHV 263 (296)
Q Consensus 220 leV~t~DRPGLL~dIt~~La~~gv~I~~AkI~T~G~ra~D~F~V 263 (296)
+-+.+.||||+|.+|+.+|++.|+||.+....+.++.+.=.|.+
T Consensus 2 ~~~~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~a~~~~~~ 45 (69)
T cd04901 2 ILHIHKNVPGVLGQINTILAEHNINIAAQYLQTRGEIGYVVIDI 45 (69)
T ss_pred EEEEecCCCcHHHHHHHHHHHcCCCHHHHhccCCCCEEEEEEEc
Confidence 45689999999999999999999999988766555444444444
No 113
>cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-p
Probab=96.69 E-value=0.011 Score=38.59 Aligned_cols=35 Identities=34% Similarity=0.718 Sum_probs=31.6
Q ss_pred EEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecC
Q 022480 220 LYIETADRPGLLVEIMKIIADVNVDVESAEIDTEG 254 (296)
Q Consensus 220 leV~t~DRPGLL~dIt~~La~~gv~I~~AkI~T~G 254 (296)
|.+.+.|+||++++|.++|.++|++|.........
T Consensus 1 i~i~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~ 35 (60)
T cd02116 1 LTVSGPDRPGLLAKVLSVLAEAGINITSIEQRTSG 35 (60)
T ss_pred CEEEecCCCchHHHHHHHHHHCCCcEEEEEeEEcC
Confidence 46889999999999999999999999999987654
No 114
>PRK08577 hypothetical protein; Provisional
Probab=96.69 E-value=0.02 Score=47.82 Aligned_cols=49 Identities=27% Similarity=0.348 Sum_probs=40.1
Q ss_pred CCcEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecC--CeeeeEEEE
Q 022480 215 PKRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEG--LVAKDKFHV 263 (296)
Q Consensus 215 ~~~TvleV~t~DRPGLL~dIt~~La~~gv~I~~AkI~T~G--~ra~D~F~V 263 (296)
...+.|.|.+.|+||+|++|+++|+++|++|.+....+.. +.+.-.|.+
T Consensus 54 k~~~~I~V~~~Dr~GvLa~I~~~l~~~~inI~~i~~~~~~~~~~~~i~l~v 104 (136)
T PRK08577 54 KKLVEIELVVEDRPGVLAKITGLLAEHGVDILATECEELKRGELAECVIIV 104 (136)
T ss_pred ccEEEEEEEEcCCCCHHHHHHHHHHHCCCCEEEEEEEEecCCCEEEEEEEE
Confidence 3489999999999999999999999999999999887653 334444444
No 115
>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]
Probab=96.64 E-value=0.0083 Score=55.64 Aligned_cols=56 Identities=16% Similarity=0.346 Sum_probs=44.6
Q ss_pred CcEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCeeeeEEEEEe----CCCCCChH
Q 022480 216 KRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSY----GGAALNSS 273 (296)
Q Consensus 216 ~~TvleV~t~DRPGLL~dIt~~La~~gv~I~~AkI~T~G~ra~D~F~V~~----~g~~L~~~ 273 (296)
+.++|.+.|+|+|||++.|+..|+++|+||....=- ++.....|+.+- ++.++..+
T Consensus 6 ~~~~LtvsCpd~~GiVaais~~l~~~g~NI~~~~qf--~D~~~g~FFmR~~f~~~~~~~~~~ 65 (287)
T COG0788 6 DTFILTVSCPDQPGIVAAISGFLAEHGCNIVDSDQF--DDPETGRFFMRVEFEGEGGPLDRE 65 (287)
T ss_pred cceEEEEecCCCCCcHHHHHHHHHHcCCceeecccc--cccccCeEEEEEEEecCCCcccHH
Confidence 468999999999999999999999999999887655 445566788873 45555543
No 116
>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech
Probab=96.62 E-value=0.025 Score=41.85 Aligned_cols=64 Identities=16% Similarity=0.288 Sum_probs=45.5
Q ss_pred EEEeCCCcchHHHHHHHHHhCCceEEEEEEEecC-CeeeeEEEEEeCCCCCChHHHHHHHHHHHHH
Q 022480 221 YIETADRPGLLVEIMKIIADVNVDVESAEIDTEG-LVAKDKFHVSYGGAALNSSLSQVLVNCLRYY 285 (296)
Q Consensus 221 eV~t~DRPGLL~dIt~~La~~gv~I~~AkI~T~G-~ra~D~F~V~~~g~~L~~~~~~~L~~~L~~~ 285 (296)
-+...|+||-|++|.+.|+++|+||.+.+..... ....=.|||.-+|.. .+...+++.+.|+..
T Consensus 3 ~~~l~d~pG~L~~vL~~f~~~~vni~~I~Srp~~~~~~~~~f~id~~~~~-~~~~~~~~l~~l~~~ 67 (75)
T cd04880 3 VFSLKNKPGALAKALKVFAERGINLTKIESRPSRKGLWEYEFFVDFEGHI-DDPDVKEALEELKRV 67 (75)
T ss_pred EEEeCCcCCHHHHHHHHHHHCCCCEEEEEeeecCCCCceEEEEEEEECCC-CCHHHHHHHHHHHHh
Confidence 4556899999999999999999999999776443 356667888756642 223344555665543
No 117
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.60 E-value=0.017 Score=42.01 Aligned_cols=34 Identities=32% Similarity=0.496 Sum_probs=31.0
Q ss_pred EEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEE
Q 022480 218 SLLYIETADRPGLLVEIMKIIADVNVDVESAEID 251 (296)
Q Consensus 218 TvleV~t~DRPGLL~dIt~~La~~gv~I~~AkI~ 251 (296)
+.+.+..+|+||.|.+|+++|+++|+||.+....
T Consensus 2 ~~~~v~~~d~pG~l~~i~~~l~~~~inI~~i~~~ 35 (72)
T cd04883 2 SQIEVRVPDRPGQLADIAAIFKDRGVNIVSVLVY 35 (72)
T ss_pred cEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEEe
Confidence 5688899999999999999999999999988754
No 118
>CHL00100 ilvH acetohydroxyacid synthase small subunit
Probab=96.58 E-value=0.013 Score=51.28 Aligned_cols=66 Identities=11% Similarity=0.174 Sum_probs=47.0
Q ss_pred EEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEeCCeEEEEEEEeecCCCCCCCChHHHHHHHHHHHHhh
Q 022480 103 TIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNL 174 (296)
Q Consensus 103 t~V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~~~~~~d~F~V~~~~~g~~l~~~~~l~~L~~~L~~~L 174 (296)
..+.|.+.|+||+|++++++|+..|+||.+-.+....+.-.-.+.+.-+ +. +..++.|+++|....
T Consensus 3 ~~isvlv~n~PGVL~RIt~lFsrRg~NIesLsv~~t~~~~~sr~TIvv~--~~----~~~ieqL~kQL~KLi 68 (174)
T CHL00100 3 HTLSVLVEDESGVLTRIAGLFARRGFNIESLAVGPAEQKGISRITMVVP--GD----DRTIEQLTKQLYKLV 68 (174)
T ss_pred EEEEEEEeCcCCHHHHHHHHHHhCCCCeeEEEeeEcCCCCccEEEEEEE--CC----HHHHHHHHHHHHHHh
Confidence 4789999999999999999999999999999996644322212333331 21 233677777777644
No 119
>cd04884 ACT_CBS C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This CD includes the C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This protein has two N-terminal tandem CBS domains and a single C-terminal ACT domain. The CBS domain is found in a wide range of proteins, often in tandem arrangements and together with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.51 E-value=0.017 Score=42.39 Aligned_cols=34 Identities=15% Similarity=0.267 Sum_probs=30.9
Q ss_pred EEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEe
Q 022480 105 VQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTE 138 (296)
Q Consensus 105 V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~ 138 (296)
+.|..+|+||-|++++.+|+++|.||.+......
T Consensus 2 l~v~~~d~pG~L~~l~~~i~~~g~nI~~i~~~~~ 35 (72)
T cd04884 2 FTFLLEDKPGTLKPVVDTLREFNARIISILTAFE 35 (72)
T ss_pred EEEEecCCCccHHHHHHHHHHCCCeEEEEEeccc
Confidence 6788999999999999999999999998877665
No 120
>cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains. ACT_RelA-SpoT: the ACT domain found C-terminal of the RelA/SpoT domains. Enzymes of the Rel/Spo family enable bacteria to survive prolonged periods of nutrient limitation by controlling guanosine-3'-diphosphate-5'-(tri)diphosphate ((p)ppGpp) production and subsequent rRNA repression (stringent response). Both the synthesis of (p)ppGpp from ATP and GDP(GTP), and its hydrolysis to GDP(GTP) and pyrophosphate, are catalyzed by Rel/Spo proteins. In Escherichia coli and its close relatives, the metabolism of (p)ppGpp is governed by two homologous proteins, RelA and SpoT. The RelA protein catalyzes (p)ppGpp synthesis in a reaction requiring its binding to ribosomes bearing codon-specified uncharged tRNA. The major role of the SpoT protein is the breakdown of (p)ppGpp by a manganese-dependent (p)ppGpp pyrophosphohydrolase activity. Although the stringent response appears to be tightly regulated by these two enzymes i
Probab=96.50 E-value=0.019 Score=39.46 Aligned_cols=35 Identities=34% Similarity=0.664 Sum_probs=32.0
Q ss_pred EEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecC
Q 022480 220 LYIETADRPGLLVEIMKIIADVNVDVESAEIDTEG 254 (296)
Q Consensus 220 leV~t~DRPGLL~dIt~~La~~gv~I~~AkI~T~G 254 (296)
|.|.+.|+||++.+|++.|.+++++|....+...+
T Consensus 1 l~v~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~ 35 (71)
T cd04876 1 IRVEAIDRPGLLADITTVIAEEKINILSVNTRTDD 35 (71)
T ss_pred CEEEEeccCcHHHHHHHHHHhCCCCEEEEEeEECC
Confidence 46789999999999999999999999999998765
No 121
>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, and related domains. This CD includes the N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, from Archaeoglobus fulgidus and other related archeal ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.48 E-value=0.026 Score=40.23 Aligned_cols=39 Identities=18% Similarity=0.185 Sum_probs=33.8
Q ss_pred EEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEeCCeE
Q 022480 104 IVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVK 142 (296)
Q Consensus 104 ~V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~~~~~ 142 (296)
.+.+.++|++|.+++++..|+++|+||.+.......++.
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~ 40 (72)
T cd04874 2 ALSIIAEDKPGVLRDLTGVIAEHGGNITYTQQFIEREGK 40 (72)
T ss_pred eEEEEeCCCCChHHHHHHHHHhCCCCEEEEEEeccCCCe
Confidence 578899999999999999999999999988887654333
No 122
>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional
Probab=96.48 E-value=0.02 Score=43.44 Aligned_cols=61 Identities=7% Similarity=0.140 Sum_probs=45.9
Q ss_pred EEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEeCCeEE--EEEEEeecCCCCCCCChHHHHHHHHHHHH
Q 022480 103 TIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQ--TKFFITRLDTGRKVEDPDLLERIRLTIIN 172 (296)
Q Consensus 103 t~V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~~~~~~--d~F~V~~~~~g~~l~~~~~l~~L~~~L~~ 172 (296)
..+.+...|+||.|++++++|+..|+||.+-.+..+.+.-. -++.+. +. ..++.|.++|..
T Consensus 4 ~~lsi~v~n~pGVL~Ri~~lf~rRGfnI~sl~v~~t~~~~~sriti~v~---~~------~~i~ql~kQL~K 66 (76)
T PRK11152 4 HQLTIKARFRPEVLERVLRVVRHRGFQVCSMNMTQNTDAQNINIELTVA---SE------RPIDLLSSQLNK 66 (76)
T ss_pred EEEEEEEECCccHHHHHHHHHhcCCeeeeeEEeeecCCCCEEEEEEEEC---CC------chHHHHHHHHhc
Confidence 47899999999999999999999999999999988655322 233331 22 455677777665
No 123
>PRK08577 hypothetical protein; Provisional
Probab=96.40 E-value=0.071 Score=44.42 Aligned_cols=49 Identities=16% Similarity=0.264 Sum_probs=40.7
Q ss_pred EEEEeecC--CCCeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEeC
Q 022480 91 HVLIDQDS--NSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEG 139 (296)
Q Consensus 91 ~V~i~~~~--~~~~t~V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~~ 139 (296)
.+.+.+-. ....+.+.|.+.|++|+|++++++|+++|+||.+....+..
T Consensus 43 ~~~~~~~~~~~k~~~~I~V~~~Dr~GvLa~I~~~l~~~~inI~~i~~~~~~ 93 (136)
T PRK08577 43 EIHLEPIALPGKKLVEIELVVEDRPGVLAKITGLLAEHGVDILATECEELK 93 (136)
T ss_pred EEEEEEcCCCCccEEEEEEEEcCCCCHHHHHHHHHHHCCCCEEEEEEEEec
Confidence 45554443 34578999999999999999999999999999998887765
No 124
>cd04884 ACT_CBS C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This CD includes the C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This protein has two N-terminal tandem CBS domains and a single C-terminal ACT domain. The CBS domain is found in a wide range of proteins, often in tandem arrangements and together with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.34 E-value=0.02 Score=42.09 Aligned_cols=34 Identities=21% Similarity=0.313 Sum_probs=30.3
Q ss_pred EEEEeCCCcchHHHHHHHHHhCCceEEEEEEEec
Q 022480 220 LYIETADRPGLLVEIMKIIADVNVDVESAEIDTE 253 (296)
Q Consensus 220 leV~t~DRPGLL~dIt~~La~~gv~I~~AkI~T~ 253 (296)
+.+..+|+||-|+++++.|+++|+||.+......
T Consensus 2 l~v~~~d~pG~L~~l~~~i~~~g~nI~~i~~~~~ 35 (72)
T cd04884 2 FTFLLEDKPGTLKPVVDTLREFNARIISILTAFE 35 (72)
T ss_pred EEEEecCCCccHHHHHHHHHHCCCeEEEEEeccc
Confidence 5788999999999999999999999998876544
No 125
>cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains. ACT_RelA-SpoT: the ACT domain found C-terminal of the RelA/SpoT domains. Enzymes of the Rel/Spo family enable bacteria to survive prolonged periods of nutrient limitation by controlling guanosine-3'-diphosphate-5'-(tri)diphosphate ((p)ppGpp) production and subsequent rRNA repression (stringent response). Both the synthesis of (p)ppGpp from ATP and GDP(GTP), and its hydrolysis to GDP(GTP) and pyrophosphate, are catalyzed by Rel/Spo proteins. In Escherichia coli and its close relatives, the metabolism of (p)ppGpp is governed by two homologous proteins, RelA and SpoT. The RelA protein catalyzes (p)ppGpp synthesis in a reaction requiring its binding to ribosomes bearing codon-specified uncharged tRNA. The major role of the SpoT protein is the breakdown of (p)ppGpp by a manganese-dependent (p)ppGpp pyrophosphohydrolase activity. Although the stringent response appears to be tightly regulated by these two enzymes i
Probab=96.30 E-value=0.043 Score=37.64 Aligned_cols=38 Identities=16% Similarity=0.227 Sum_probs=33.0
Q ss_pred EEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEeCCeE
Q 022480 105 VQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVK 142 (296)
Q Consensus 105 V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~~~~~ 142 (296)
+.|.+.|++|.+..++..|.+++++|....+...++..
T Consensus 1 l~v~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~~~~ 38 (71)
T cd04876 1 IRVEAIDRPGLLADITTVIAEEKINILSVNTRTDDDGL 38 (71)
T ss_pred CEEEEeccCcHHHHHHHHHHhCCCCEEEEEeEECCCCE
Confidence 46789999999999999999999999999987766333
No 126
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy
Probab=96.30 E-value=0.031 Score=41.67 Aligned_cols=62 Identities=18% Similarity=0.252 Sum_probs=44.0
Q ss_pred EEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCe-eeeEEEEEeCCCCCChHHHHHHHHHHHH
Q 022480 220 LYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLV-AKDKFHVSYGGAALNSSLSQVLVNCLRY 284 (296)
Q Consensus 220 leV~t~DRPGLL~dIt~~La~~gv~I~~AkI~T~G~r-a~D~F~V~~~g~~L~~~~~~~L~~~L~~ 284 (296)
|-+...|+||-|++|.+.|+.+|||+.+.+-...... .+=.|||.-+| .++..+++.+.|+.
T Consensus 3 l~f~l~~~pG~L~~vL~~f~~~~iNlt~IeSRP~~~~~~~y~Ffvd~~~---~~~~~~~~l~~L~~ 65 (74)
T cd04904 3 LIFSLKEEVGALARALKLFEEFGVNLTHIESRPSRRNGSEYEFFVDCEV---DRGDLDQLISSLRR 65 (74)
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCCcEEEEECCCCCCCCceEEEEEEEEc---ChHHHHHHHHHHHH
Confidence 4455689999999999999999999999988655443 45578886566 23333444444443
No 127
>PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B.
Probab=96.24 E-value=0.021 Score=41.59 Aligned_cols=58 Identities=17% Similarity=0.281 Sum_probs=36.9
Q ss_pred CCcchHHHHHHHHHhCCceEEEEEEEecCCeeeeEEEEEeCCCCCChHHHHHHHHHHHHHc
Q 022480 226 DRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGGAALNSSLSQVLVNCLRYYL 286 (296)
Q Consensus 226 DRPGLL~dIt~~La~~gv~I~~AkI~T~G~ra~D~F~V~~~g~~L~~~~~~~L~~~L~~~l 286 (296)
|+||.|.+|+..|...|+||++..+........-.+.+.-.|.. ...++|...|.+.+
T Consensus 1 n~~GvL~Ri~~vf~rRg~nI~sl~v~~~~~~~~~riti~v~~~~---~~i~~l~~Ql~Kli 58 (63)
T PF13710_consen 1 NQPGVLNRITGVFRRRGFNIESLSVGPTEDPGISRITIVVSGDD---REIEQLVKQLEKLI 58 (63)
T ss_dssp SSTTHHHHHHHHHHTTT-EECEEEEEE-SSTTEEEEEEEEES-C---CHHHHHHHHHHCST
T ss_pred CCcHHHHHHHHHHhcCCeEEeeEEeeecCCCCEEEEEEEEeeCc---hhHHHHHHHHhccC
Confidence 78999999999999999999999998733222222333323321 13456666666543
No 128
>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active
Probab=96.23 E-value=0.02 Score=40.47 Aligned_cols=44 Identities=14% Similarity=0.119 Sum_probs=36.4
Q ss_pred EEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEeC-CeE-EEEEEE
Q 022480 105 VQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEG-SVK-QTKFFI 148 (296)
Q Consensus 105 V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~~-~~~-~d~F~V 148 (296)
+.|.+.|++|++++++.+|+++|+||.+..+...+ ++. .-.|.+
T Consensus 2 l~v~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~~~~~~~~~v 47 (71)
T cd04879 2 LLIVHKDVPGVIGKVGTILGEHGINIAAMQVGRKEKGGIAYMVLDV 47 (71)
T ss_pred EEEEecCCCCHHHHHHHHHHhcCCCeeeEEEeccCCCCEEEEEEEc
Confidence 57889999999999999999999999999998865 333 344555
No 129
>PRK07334 threonine dehydratase; Provisional
Probab=96.20 E-value=0.024 Score=55.65 Aligned_cols=64 Identities=17% Similarity=0.256 Sum_probs=48.1
Q ss_pred cEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEec-----CCeeeeEEEEEeCCCCCChHHHHHHHHHHHH
Q 022480 217 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTE-----GLVAKDKFHVSYGGAALNSSLSQVLVNCLRY 284 (296)
Q Consensus 217 ~TvleV~t~DRPGLL~dIt~~La~~gv~I~~AkI~T~-----G~ra~D~F~V~~~g~~L~~~~~~~L~~~L~~ 284 (296)
.+.|+|.+.||||+|.+|+++|++.++||.+....+. ++.+.=.|.|.=.+ .+++++|.++|+.
T Consensus 326 ~v~l~I~~~dr~GlL~dI~~~is~~~~nI~~v~~~~~~~~~~~~~~~i~l~i~V~d----~~~L~~vi~~Lr~ 394 (403)
T PRK07334 326 LARLRVDIRDRPGALARVTALIGEAGANIIEVSHQRLFTDLPAKGAELELVIETRD----AAHLQEVIAALRA 394 (403)
T ss_pred EEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEecccCCCCCeEEEEEEEEeCC----HHHHHHHHHHHHH
Confidence 4899999999999999999999999999999998764 34444444442121 2356777777765
No 130
>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit. The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.15 E-value=0.055 Score=38.32 Aligned_cols=34 Identities=21% Similarity=0.304 Sum_probs=31.0
Q ss_pred EEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEe
Q 022480 105 VQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTE 138 (296)
Q Consensus 105 V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~ 138 (296)
+.+.+.|++|.+++++..|+++|+||........
T Consensus 2 l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~ 35 (71)
T cd04903 2 LIVVHKDKPGAIAKVTSVLADHEINIAFMRVSRK 35 (71)
T ss_pred EEEEeCCCCChHHHHHHHHHHcCcCeeeeEEEec
Confidence 5788999999999999999999999999888763
No 131
>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme. The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi
Probab=96.10 E-value=0.09 Score=39.44 Aligned_cols=48 Identities=21% Similarity=0.376 Sum_probs=38.0
Q ss_pred EEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEeCC-eEEEEEEEee
Q 022480 103 TIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGS-VKQTKFFITR 150 (296)
Q Consensus 103 t~V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~~~-~~~d~F~V~~ 150 (296)
+.+.+..+|+||.|+++.++|+++|+||.+-......+ ...-.|+|.-
T Consensus 2 ~sl~~~~~d~~G~L~~il~~f~~~~ini~~i~s~p~~~~~~~~~f~vd~ 50 (80)
T cd04905 2 TSIVFTLPNKPGALYDVLGVFAERGINLTKIESRPSKGGLWEYVFFIDF 50 (80)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHCCcCEEEEEEEEcCCCCceEEEEEEE
Confidence 35667789999999999999999999999987776654 2334577765
No 132
>cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-p
Probab=96.00 E-value=0.082 Score=34.25 Aligned_cols=35 Identities=26% Similarity=0.411 Sum_probs=31.9
Q ss_pred EEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEeC
Q 022480 105 VQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEG 139 (296)
Q Consensus 105 V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~~ 139 (296)
|.+.++|++|.+.+++++|..+|++|.........
T Consensus 1 i~i~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~ 35 (60)
T cd02116 1 LTVSGPDRPGLLAKVLSVLAEAGINITSIEQRTSG 35 (60)
T ss_pred CEEEecCCCchHHHHHHHHHHCCCcEEEEEeEEcC
Confidence 46889999999999999999999999999987764
No 133
>PRK04435 hypothetical protein; Provisional
Probab=95.98 E-value=0.088 Score=44.74 Aligned_cols=78 Identities=13% Similarity=0.103 Sum_probs=54.5
Q ss_pred CcEEEEeecCCCCeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEeCCeEE-EEEEEeecCCCCCCCChHHHHHHH
Q 022480 89 MPHVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQ-TKFFITRLDTGRKVEDPDLLERIR 167 (296)
Q Consensus 89 ~p~V~i~~~~~~~~t~V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~~~~~~-d~F~V~~~~~g~~l~~~~~l~~L~ 167 (296)
.-..-+.....+....+.+.+.|+||+|++|+.+|+++|+||..-......++.. -.|.+... +. ...++.|.
T Consensus 56 d~vf~~~~~~~~r~vtL~i~l~Dr~GlLs~Il~~IA~~~aNIltI~q~i~~~g~a~vs~tVevs--~~----~~~L~~Li 129 (147)
T PRK04435 56 DYVFPFDEMVKGKIITLSLLLEDRSGTLSKVLNVIAEAGGNILTINQSIPLQGRANVTISIDTS--SM----EGDIDELL 129 (147)
T ss_pred CeeECccccCCCcEEEEEEEEecCCCHHHHHHHHHHHcCCCeEEEEEEcCCCCEEEEEEEEEeC--Ch----HHHHHHHH
Confidence 3444555556677789999999999999999999999999999988766555543 34555442 11 12555555
Q ss_pred HHHHH
Q 022480 168 LTIIN 172 (296)
Q Consensus 168 ~~L~~ 172 (296)
..|..
T Consensus 130 ~~L~~ 134 (147)
T PRK04435 130 EKLRN 134 (147)
T ss_pred HHHHc
Confidence 55554
No 134
>cd04902 ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). The C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with an extended C-terminal (xct) region from bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. Some 3PGDH enzymes have an additional domain formed by an extended C-terminal region. This additional domain introduces significant asymmetry to the homotetramer. Adjacent ACT (regulatory) domains interact, creating two serine-binding sites, however, this asymmetric arrangement results in the formation of two different and distinct domain interfaces between iden
Probab=95.90 E-value=0.045 Score=39.59 Aligned_cols=34 Identities=21% Similarity=0.293 Sum_probs=30.6
Q ss_pred EEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEe
Q 022480 105 VQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTE 138 (296)
Q Consensus 105 V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~ 138 (296)
+.+..+|+||.+++++++|+++|+||.+......
T Consensus 2 l~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~ 35 (73)
T cd04902 2 LVVRNTDRPGVIGKVGTILGEAGINIAGMQVGRD 35 (73)
T ss_pred EEEEeCCCCCHHHHHHHHHHHcCcChhheEeecc
Confidence 4678999999999999999999999998887665
No 135
>PRK04435 hypothetical protein; Provisional
Probab=95.74 E-value=0.076 Score=45.13 Aligned_cols=66 Identities=18% Similarity=0.183 Sum_probs=47.4
Q ss_pred CCcEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEec-CCeeeeEEEEEeCCCCCChHHHHHHHHHHH
Q 022480 215 PKRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTE-GLVAKDKFHVSYGGAALNSSLSQVLVNCLR 283 (296)
Q Consensus 215 ~~~TvleV~t~DRPGLL~dIt~~La~~gv~I~~AkI~T~-G~ra~D~F~V~~~g~~L~~~~~~~L~~~L~ 283 (296)
.....|.+...|+||+|++|.++|+++|+||......+. ++.+.=.|-+...+. ..+.++|.++|+
T Consensus 67 ~r~vtL~i~l~Dr~GlLs~Il~~IA~~~aNIltI~q~i~~~g~a~vs~tVevs~~---~~~L~~Li~~L~ 133 (147)
T PRK04435 67 GKIITLSLLLEDRSGTLSKVLNVIAEAGGNILTINQSIPLQGRANVTISIDTSSM---EGDIDELLEKLR 133 (147)
T ss_pred CcEEEEEEEEecCCCHHHHHHHHHHHcCCCeEEEEEEcCCCCEEEEEEEEEeCCh---HHHHHHHHHHHH
Confidence 347999999999999999999999999999998876543 344555566643211 113456666655
No 136
>PRK00227 glnD PII uridylyl-transferase; Provisional
Probab=95.64 E-value=0.048 Score=57.26 Aligned_cols=69 Identities=19% Similarity=0.199 Sum_probs=56.8
Q ss_pred cEEEEEEe-CCCcchHHHHHHHHHhCCceEEEEEEEecCCeeeeEEEEEe-CCCCCChH-HHHHHHHHHHHHc
Q 022480 217 RSLLYIET-ADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSY-GGAALNSS-LSQVLVNCLRYYL 286 (296)
Q Consensus 217 ~TvleV~t-~DRPGLL~dIt~~La~~gv~I~~AkI~T~G~ra~D~F~V~~-~g~~L~~~-~~~~L~~~L~~~l 286 (296)
...++|.. +|++|+|.+++.+|+.++.+|++|++.+ ++.+...|.|+. .|.+..+. .+|.++..+.-.+
T Consensus 546 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 617 (693)
T PRK00227 546 DGFFTVIWHGDYPRELVRVLALIAAKGWNILSARMVA-NGPWSAEFDVRANGPQDFDPQEFLQAYKSGVYSEL 617 (693)
T ss_pred CCeEEEEecCCcccHHHHHHHHHHhcCceeeEeEEec-CCceEEEEEEecCCCCCCChHHHHHHHHHhhcCCC
Confidence 36777888 9999999999999999999999999999 888889999997 67776655 5566666655443
No 137
>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.60 E-value=0.08 Score=38.58 Aligned_cols=61 Identities=15% Similarity=0.215 Sum_probs=41.8
Q ss_pred EEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEeCCeEEEEEEEeecCCCCCCCChHHHHHHHHHHHH
Q 022480 105 VQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIIN 172 (296)
Q Consensus 105 V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~~~~~~d~F~V~~~~~g~~l~~~~~l~~L~~~L~~ 172 (296)
+.|..+||||-|.+++.+|.. |.||.+-+-...+.+...+++..+- .+++.++.|.+.|++
T Consensus 1 ~~v~ipdkPG~l~~~~~~i~~-~~nI~~~~~~~~~~~~~~v~v~ie~------~~~~~~~~i~~~L~~ 61 (68)
T cd04885 1 FAVTFPERPGALKKFLELLGP-PRNITEFHYRNQGGDEARVLVGIQV------PDREDLAELKERLEA 61 (68)
T ss_pred CEEECCCCCCHHHHHHHHhCC-CCcEEEEEEEcCCCCceEEEEEEEe------CCHHHHHHHHHHHHH
Confidence 357789999999999999999 9999987665444333344444331 124566667766654
No 138
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.60 E-value=0.036 Score=39.13 Aligned_cols=35 Identities=17% Similarity=0.303 Sum_probs=31.3
Q ss_pred EEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEeC
Q 022480 105 VQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEG 139 (296)
Q Consensus 105 V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~~ 139 (296)
+.|..+|+||-|++++++|.++|+||.+...+...
T Consensus 2 i~v~~~d~pG~L~~i~~~l~~~~~nI~~i~~~~~~ 36 (65)
T cd04882 2 LAVEVPDKPGGLHEILQILSEEGINIEYMYAFVEK 36 (65)
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCCChhheEEEccC
Confidence 67888999999999999999999999988776654
No 139
>cd04929 ACT_TPH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxytryptamine (serotonin) and the first reaction in the synthesis of melatonin. Very little is known about the role of the ACT domain in TPH, which appears to be regulated by phosphorylation but not by its substrate or cofactor. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.52 E-value=0.089 Score=39.54 Aligned_cols=62 Identities=15% Similarity=0.168 Sum_probs=44.5
Q ss_pred EEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCe-eeeEEEEEeCCCCCChHHHHHHHHHHHH
Q 022480 220 LYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLV-AKDKFHVSYGGAALNSSLSQVLVNCLRY 284 (296)
Q Consensus 220 leV~t~DRPGLL~dIt~~La~~gv~I~~AkI~T~G~r-a~D~F~V~~~g~~L~~~~~~~L~~~L~~ 284 (296)
|-+...|+||-|+++.+.|+.+|+|+.+.+....... .+=.|||.-+|+. + ..+++.+.|+.
T Consensus 3 l~~~l~~~~g~L~~iL~~f~~~~inl~~IeSRP~~~~~~~y~F~id~e~~~--~-~i~~~l~~l~~ 65 (74)
T cd04929 3 VIFSLKNEVGGLAKALKLFQELGINVVHIESRKSKRRSSEFEIFVDCECDQ--R-RLDELVQLLKR 65 (74)
T ss_pred EEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEEEcCH--H-HHHHHHHHHHH
Confidence 4455689999999999999999999999998765443 4557888656764 2 23344454444
No 140
>PRK07334 threonine dehydratase; Provisional
Probab=95.46 E-value=0.11 Score=51.07 Aligned_cols=63 Identities=14% Similarity=0.217 Sum_probs=47.5
Q ss_pred EEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEe----CCeEE-EEEEEeecCCCCCCCChHHHHHHHHHHHH
Q 022480 103 TIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTE----GSVKQ-TKFFITRLDTGRKVEDPDLLERIRLTIIN 172 (296)
Q Consensus 103 t~V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~----~~~~~-d~F~V~~~~~g~~l~~~~~l~~L~~~L~~ 172 (296)
..|.|.+.||+|+|++|+.+|++.++||.+....+. .++.. -.|.|.- .+.+.++.|...|++
T Consensus 327 v~l~I~~~dr~GlL~dI~~~is~~~~nI~~v~~~~~~~~~~~~~~~i~l~i~V-------~d~~~L~~vi~~Lr~ 394 (403)
T PRK07334 327 ARLRVDIRDRPGALARVTALIGEAGANIIEVSHQRLFTDLPAKGAELELVIET-------RDAAHLQEVIAALRA 394 (403)
T ss_pred EEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEecccCCCCCeEEEEEEEEe-------CCHHHHHHHHHHHHH
Confidence 689999999999999999999999999999998765 34442 2344432 234667777777665
No 141
>PRK06635 aspartate kinase; Reviewed
Probab=95.46 E-value=0.28 Score=47.92 Aligned_cols=108 Identities=15% Similarity=0.258 Sum_probs=66.4
Q ss_pred EEEEEE-eCCCccHHHHHHHHHHHCCceEEEEEEEEeCCeEE-EEEEEeecCCCCCCCChHHHHHHHHHHHHhhcccCCC
Q 022480 103 TIVQLS-FGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQ-TKFFITRLDTGRKVEDPDLLERIRLTIINNLLKYHPE 180 (296)
Q Consensus 103 t~V~V~-~~DrpGLLa~i~~vL~~~glnI~~A~I~T~~~~~~-d~F~V~~~~~g~~l~~~~~l~~L~~~L~~~L~~~~~~ 180 (296)
..|+|. ..+++|.++++..+|.++|+||..-......++.. -.|.|.. +..++..+.|.+ +..
T Consensus 263 ~~Isv~g~~~~~g~l~~i~~~L~~~~I~i~~is~s~~~~~~~~is~~v~~----------~~~~~a~~~L~~-~~~---- 327 (404)
T PRK06635 263 AKVTVVGVPDKPGIAAQIFGALAEANINVDMIVQNVSEDGKTDITFTVPR----------DDLEKALELLEE-VKD---- 327 (404)
T ss_pred EEEEECCCCCCccHHHHHHHHHHHcCCeEEEEEecCCCCCceeEEEEEcH----------HHHHHHHHHHHH-HHH----
Confidence 344444 57789999999999999999999654443333232 2344432 222333333333 110
Q ss_pred chhHhhhccccCccCCCccccccccceeeeccCCCCcEEEEEEe---CCCcchHHHHHHHHHhCCceEEEEE
Q 022480 181 SSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIET---ADRPGLLVEIMKIIADVNVDVESAE 249 (296)
Q Consensus 181 ~~~~La~~~~~~~~~~~r~~~~~~~~~V~v~~~~~~~TvleV~t---~DRPGLL~dIt~~La~~gv~I~~Ak 249 (296)
.+ .. ..|.+.+ +.+.+.|.+ .|+||.+++|.++|++.|++|....
T Consensus 328 ---~~-----------------~~-~~i~~~~---~ia~isvvG~~~~~~~g~~a~i~~~La~~~Ini~~i~ 375 (404)
T PRK06635 328 ---EI-----------------GA-ESVTYDD---DIAKVSVVGVGMRSHPGVAAKMFEALAEEGINIQMIS 375 (404)
T ss_pred ---Hc-----------------Cc-ceEEEcC---CeEEEEEECCCCCCCchHHHHHHHHHHHCCCCEEEEE
Confidence 00 00 1122222 357777765 6999999999999999999998863
No 142
>TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases.
Probab=95.37 E-value=0.91 Score=44.27 Aligned_cols=107 Identities=15% Similarity=0.184 Sum_probs=66.4
Q ss_pred CeEEEEEE---eCCCccHHHHHHHHHHHCCceEEEEEEEEeCCeEEEEEEEeecCCCCCCCChHHHHHHHHHHHHhhccc
Q 022480 101 DATIVQLS---FGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLKY 177 (296)
Q Consensus 101 ~~t~V~V~---~~DrpGLLa~i~~vL~~~glnI~~A~I~T~~~~~~d~F~V~~~~~g~~l~~~~~l~~L~~~L~~~L~~~ 177 (296)
+...|+|. ..+++|.++++..+|.++|+||..-.... .+ .--.|.|.. +..+++.+.|.+.+..
T Consensus 259 ~va~vsv~g~~~~~~~g~~~~if~~L~~~~I~i~~i~~~~-s~-~~Is~~V~~----------~d~~~a~~~L~~~~~~- 325 (401)
T TIGR00656 259 NVTRVTVHGLGMLGKRGFLARIFGALAERNINVDLISQTP-SE-TSISLTVDE----------TDADEAVRALKDQSGA- 325 (401)
T ss_pred CEEEEEEecCCCCCCccHHHHHHHHHHHcCCcEEEEEcCC-CC-ceEEEEEeH----------HHHHHHHHHHHHHHHh-
Confidence 44567777 57889999999999999999997443321 12 111244432 2223333334332211
Q ss_pred CCCchhHhhhccccCccCCCccccccccceeeeccCCCCcEEEEEEeC---CCcchHHHHHHHHHhCCceEEEE
Q 022480 178 HPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIETA---DRPGLLVEIMKIIADVNVDVESA 248 (296)
Q Consensus 178 ~~~~~~~La~~~~~~~~~~~r~~~~~~~~~V~v~~~~~~~TvleV~t~---DRPGLL~dIt~~La~~gv~I~~A 248 (296)
. . ...+.+++ +.+.|.|.+. ++||+++++.++|++.|+||...
T Consensus 326 -------~-----------------~-~~~i~~~~---~~a~IsvVG~~~~~~~g~~a~i~~~L~~~gIni~~i 371 (401)
T TIGR00656 326 -------A-----------------G-LDRVEVEE---GLAKVSIVGAGMVGAPGVASEIFSALEEKNINILMI 371 (401)
T ss_pred -------c-----------------C-CceEEEeC---CeEEEEEECCCcccCccHHHHHHHHHHHCCCcEEEE
Confidence 0 0 00122222 3577777765 89999999999999999999853
No 143
>PRK11899 prephenate dehydratase; Provisional
Probab=95.25 E-value=0.11 Score=48.93 Aligned_cols=53 Identities=15% Similarity=0.154 Sum_probs=43.7
Q ss_pred cEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCe-eeeEEEEEeCCCC
Q 022480 217 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLV-AKDKFHVSYGGAA 269 (296)
Q Consensus 217 ~TvleV~t~DRPGLL~dIt~~La~~gv~I~~AkI~T~G~r-a~D~F~V~~~g~~ 269 (296)
-|.|-+...|+||.|++|...|+++|||+.+.+-.-.+.. -.=.|||.-+|+.
T Consensus 194 ktsl~~~~~~~pGaL~~vL~~Fa~~gINLtkIeSRP~~~~~~~Y~F~id~eg~~ 247 (279)
T PRK11899 194 VTTFVFRVRNIPAALYKALGGFATNGVNMTKLESYMVGGSFTATQFYADIEGHP 247 (279)
T ss_pred eEEEEEEeCCCCChHHHHHHHHHHcCCCeeeEEeeecCCCCceEEEEEEEECCC
Confidence 4777777789999999999999999999999999765544 5557888657764
No 144
>PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B.
Probab=95.23 E-value=0.069 Score=38.83 Aligned_cols=56 Identities=13% Similarity=0.221 Sum_probs=37.6
Q ss_pred CCccHHHHHHHHHHHCCceEEEEEEEEeCCeEEEEEEEeecCCCCCCCChHHHHHHHHHHHH
Q 022480 111 DRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIIN 172 (296)
Q Consensus 111 DrpGLLa~i~~vL~~~glnI~~A~I~T~~~~~~d~F~V~~~~~g~~l~~~~~l~~L~~~L~~ 172 (296)
|+||.|.+++++|...|+||.+-.+....+.-.-.+.++- .|. ++.++.|.+.|..
T Consensus 1 n~~GvL~Ri~~vf~rRg~nI~sl~v~~~~~~~~~riti~v--~~~----~~~i~~l~~Ql~K 56 (63)
T PF13710_consen 1 NQPGVLNRITGVFRRRGFNIESLSVGPTEDPGISRITIVV--SGD----DREIEQLVKQLEK 56 (63)
T ss_dssp SSTTHHHHHHHHHHTTT-EECEEEEEE-SSTTEEEEEEEE--ES-----CCHHHHHHHHHHC
T ss_pred CCcHHHHHHHHHHhcCCeEEeeEEeeecCCCCEEEEEEEE--eeC----chhHHHHHHHHhc
Confidence 7899999999999999999999999885543322233333 232 1455667766665
No 145
>cd04898 ACT_ACR-like_4 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.18 E-value=0.035 Score=41.97 Aligned_cols=67 Identities=16% Similarity=0.163 Sum_probs=51.1
Q ss_pred EEEEeCCCcchHHHHHHHHHhCCceEEEEEEEe--cCCeeeeEEEE--EeCCCCCChH-HHHHHHHHHHHHc
Q 022480 220 LYIETADRPGLLVEIMKIIADVNVDVESAEIDT--EGLVAKDKFHV--SYGGAALNSS-LSQVLVNCLRYYL 286 (296)
Q Consensus 220 leV~t~DRPGLL~dIt~~La~~gv~I~~AkI~T--~G~ra~D~F~V--~~~g~~L~~~-~~~~L~~~L~~~l 286 (296)
+|+.+.-||-.+||||-+|+.+|+-|.+|+|.- .+++...+|.+ .+.++.++.. .++++.+.+++.+
T Consensus 3 VElsGkGRPrVfyDvTlALK~L~i~IFsaeIgR~~~~~r~wEvyR~LL~e~~~~~~~~~~r~~i~drv~~~l 74 (77)
T cd04898 3 VELSGKGRPRVFYDITLALKKLGICIFSAEIGRHSTGDRQWEVYRVLLLEHDRLKLGGRQRSKVVDRVTKTL 74 (77)
T ss_pred ccccCCCCcceeeehHHHHHHhccEEEehhhhhhhcCCeeEEEEEEeecCCCccccchHHHHHHHHHHHHHH
Confidence 688999999999999999999999999999963 45666666444 3444445544 6677887777654
No 146
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.14 E-value=0.11 Score=37.65 Aligned_cols=36 Identities=25% Similarity=0.398 Sum_probs=32.2
Q ss_pred EEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEe
Q 022480 103 TIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTE 138 (296)
Q Consensus 103 t~V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~ 138 (296)
+.+.+..+|+||.+..++++|.++|+||.+......
T Consensus 2 ~~~~v~~~d~pG~l~~i~~~l~~~~inI~~i~~~~~ 37 (72)
T cd04883 2 SQIEVRVPDRPGQLADIAAIFKDRGVNIVSVLVYPS 37 (72)
T ss_pred cEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEEecc
Confidence 578899999999999999999999999998876554
No 147
>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional
Probab=95.02 E-value=0.1 Score=55.25 Aligned_cols=63 Identities=19% Similarity=0.263 Sum_probs=47.2
Q ss_pred cEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecC--CeeeeEEEEEeCCCCCChHHHHHHHHHHH
Q 022480 217 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEG--LVAKDKFHVSYGGAALNSSLSQVLVNCLR 283 (296)
Q Consensus 217 ~TvleV~t~DRPGLL~dIt~~La~~gv~I~~AkI~T~G--~ra~D~F~V~~~g~~L~~~~~~~L~~~L~ 283 (296)
.+.|.|.+.||+|||.+|+++|++.++||..+.+.+.. +.+.-.|.|.=.+ -.++..|.+.|+
T Consensus 666 ~v~I~I~~~Dr~GlL~dIt~~is~~~~nI~~v~~~~~~~~~~~~~~~~ieV~~----~~~L~~l~~~L~ 730 (743)
T PRK10872 666 SLVVRVTANDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIEIYN----LQVLGRVLGKLN 730 (743)
T ss_pred EEEEEEEEcCCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCCEEEEEEEEEECC----HHHHHHHHHHHh
Confidence 56899999999999999999999999999999998753 5555556553111 114556666655
No 148
>cd04901 ACT_3PGDH C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. The C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In Escherichia coli, the SerA 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. In the homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active site is postulated to involve the tethering of the regulatory domains together to create a rigid quaternary structure with a solvent-
Probab=94.97 E-value=0.021 Score=41.07 Aligned_cols=36 Identities=17% Similarity=0.212 Sum_probs=30.8
Q ss_pred EEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEeCC
Q 022480 105 VQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGS 140 (296)
Q Consensus 105 V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~~~ 140 (296)
+.+.+.|+||++++++.+|+++|+||......+.++
T Consensus 2 ~~~~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~ 37 (69)
T cd04901 2 ILHIHKNVPGVLGQINTILAEHNINIAAQYLQTRGE 37 (69)
T ss_pred EEEEecCCCcHHHHHHHHHHHcCCCHHHHhccCCCC
Confidence 577899999999999999999999998876655443
No 149
>PRK06291 aspartate kinase; Provisional
Probab=94.88 E-value=2.8 Score=42.06 Aligned_cols=110 Identities=12% Similarity=0.188 Sum_probs=68.9
Q ss_pred CCeEEEEEEeC---CCccHHHHHHHHHHHCCceEEEEEEEEeCCeEEEEEEEeecCCCCCCCChHHHHHHHHHHHHhhcc
Q 022480 100 SDATIVQLSFG---DRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLK 176 (296)
Q Consensus 100 ~~~t~V~V~~~---DrpGLLa~i~~vL~~~glnI~~A~I~T~~~~~~d~F~V~~~~~g~~l~~~~~l~~L~~~L~~~L~~ 176 (296)
++...|+|.+. +.+|+++++.++|.++|+||..-...+....+ .|.|.. +..++..+.|...+.+
T Consensus 319 ~~valIsI~g~~m~~~~g~~arvf~~L~~~gI~V~mIsq~sse~sI--sf~V~~----------~d~~~av~~L~~~~~~ 386 (465)
T PRK06291 319 KNVALINISGAGMVGVPGTAARIFSALAEEGVNVIMISQGSSESNI--SLVVDE----------ADLEKALKALRREFGE 386 (465)
T ss_pred CCEEEEEEeCCCCCCCccHHHHHHHHHHHCCCcEEEEEecCCCceE--EEEEeH----------HHHHHHHHHHHHHHHH
Confidence 34567788754 78999999999999999999875433322222 244433 1222233334333321
Q ss_pred cCCCchhHhhhccccCccCCCccccccccceeeeccCCCCcEEEEEEeC---CCcchHHHHHHHHHhCCceEEEEEE
Q 022480 177 YHPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIETA---DRPGLLVEIMKIIADVNVDVESAEI 250 (296)
Q Consensus 177 ~~~~~~~~La~~~~~~~~~~~r~~~~~~~~~V~v~~~~~~~TvleV~t~---DRPGLL~dIt~~La~~gv~I~~AkI 250 (296)
. . ...|.+.+ +...|.|.+. +++|++.++..+|.+.|++|....-
T Consensus 387 ~-~-------------------------~~~i~~~~---~~a~IsvvG~gm~~~~gv~~rif~aL~~~~I~v~~isq 434 (465)
T PRK06291 387 G-L-------------------------VRDVTFDK---DVCVVAVVGAGMAGTPGVAGRIFSALGESGINIKMISQ 434 (465)
T ss_pred h-c-------------------------CcceEEeC---CEEEEEEEcCCccCCcChHHHHHHHHHHCCCCEEEEEe
Confidence 0 0 00122222 3577888775 7999999999999999999986553
No 150
>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism]
Probab=94.65 E-value=0.021 Score=49.74 Aligned_cols=50 Identities=18% Similarity=0.204 Sum_probs=45.8
Q ss_pred CcEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCeeeeEEEEEe
Q 022480 216 KRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSY 265 (296)
Q Consensus 216 ~~TvleV~t~DRPGLL~dIt~~La~~gv~I~~AkI~T~G~ra~D~F~V~~ 265 (296)
++-+|...+.|||||+..|+++..++|+|+...|++..|+...-+..|+.
T Consensus 4 ~~LvItavg~d~pgl~~~lar~v~s~Gcn~leSRla~~g~~~a~i~lisg 53 (176)
T COG2716 4 HYLVITAVGADRPGLVNTLARAVASSGCNWLESRLAMLGEEFAGIMLISG 53 (176)
T ss_pred cEEEEEEecCCCcHHHHHHHHHHHhcCCcchHHHHHHhhcceeEEEEEee
Confidence 36899999999999999999999999999999999999999888777753
No 151
>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional
Probab=94.43 E-value=0.17 Score=53.38 Aligned_cols=63 Identities=11% Similarity=0.154 Sum_probs=46.9
Q ss_pred cEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecC-CeeeeEEEEEeCCCCCChHHHHHHHHHHH
Q 022480 217 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEG-LVAKDKFHVSYGGAALNSSLSQVLVNCLR 283 (296)
Q Consensus 217 ~TvleV~t~DRPGLL~dIt~~La~~gv~I~~AkI~T~G-~ra~D~F~V~~~g~~L~~~~~~~L~~~L~ 283 (296)
.+.|.|.+.||+|+|.+|+++|+..++||.++.+.+.. ..+.-.|.|.=.+ -.++..|...|+
T Consensus 626 ~v~i~I~~~dr~GlL~dI~~~i~~~~~nI~~v~~~~~~~~~~~~~~~ieV~~----~~~L~~i~~~Lr 689 (702)
T PRK11092 626 IAEIKVEMFNHQGALANLTAAINTTGSNIQSLNTEEKDGRVYSAFIRLTARD----RVHLANIMRKIR 689 (702)
T ss_pred EEEEEEEEeCCCCHHHHHHHHHHHCCCCeEEEEEEEcCCCEEEEEEEEEECC----HHHHHHHHHHHh
Confidence 57899999999999999999999999999999998765 3444455553111 124556666655
No 152
>TIGR00719 sda_beta L-serine dehydratase, iron-sulfur-dependent, beta subunit. This family of enzymes is not homologous to the pyridoxal phosphate-dependent threonine deaminases and eukaryotic serine deaminases.
Probab=94.31 E-value=0.21 Score=44.82 Aligned_cols=55 Identities=15% Similarity=0.364 Sum_probs=41.5
Q ss_pred CcEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEec--CCeeeeEEEEEeCCCCCChH
Q 022480 216 KRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTE--GLVAKDKFHVSYGGAALNSS 273 (296)
Q Consensus 216 ~~TvleV~t~DRPGLL~dIt~~La~~gv~I~~AkI~T~--G~ra~D~F~V~~~g~~L~~~ 273 (296)
+...|-+.-.||||.+..|+.+|.++||||..+++... |+.|.=+..+ .++++++
T Consensus 147 ~g~~L~~~~~D~PG~Ig~vg~~Lg~~~iNIa~m~v~r~~~g~~Ai~vl~v---D~~v~~~ 203 (208)
T TIGR00719 147 EHPAILLEHNDKFGTIAGVANLLAGFEINIEHLETAKKDIGNIALLTIEI---DKNIDDH 203 (208)
T ss_pred CccEEEEEeCCCCChHHHHHHHHHhCCccEEEEEEEecCCCCEEEEEEEe---CCCCCHH
Confidence 45677788899999999999999999999999999764 4544444333 3344444
No 153
>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional
Probab=94.22 E-value=0.34 Score=51.37 Aligned_cols=63 Identities=17% Similarity=0.186 Sum_probs=47.4
Q ss_pred EEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEeC-CeE-EEEEEEeecCCCCCCCChHHHHHHHHHHHH
Q 022480 103 TIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEG-SVK-QTKFFITRLDTGRKVEDPDLLERIRLTIIN 172 (296)
Q Consensus 103 t~V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~~-~~~-~d~F~V~~~~~g~~l~~~~~l~~L~~~L~~ 172 (296)
..|.|.+.||+|+|++|+.+|+..++||.+..+.+.. ++. .-.|.|.- .+.+.+.+|-..|..
T Consensus 667 v~I~I~~~Dr~GlL~dIt~~is~~~~nI~~v~~~~~~~~~~~~~~~~ieV-------~~~~~L~~l~~~L~~ 731 (743)
T PRK10872 667 LVVRVTANDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIEI-------YNLQVLGRVLGKLNQ 731 (743)
T ss_pred EEEEEEEcCCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCCEEEEEEEEEE-------CCHHHHHHHHHHHhc
Confidence 4788999999999999999999999999999997764 444 33454442 233666666666654
No 154
>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech
Probab=94.20 E-value=0.68 Score=34.00 Aligned_cols=64 Identities=14% Similarity=0.302 Sum_probs=41.3
Q ss_pred EEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEeCC-eEEEEEEEeecCCCCCCCChHHHHHHHHHHHH
Q 022480 105 VQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGS-VKQTKFFITRLDTGRKVEDPDLLERIRLTIIN 172 (296)
Q Consensus 105 V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~~~-~~~d~F~V~~~~~g~~l~~~~~l~~L~~~L~~ 172 (296)
+.+..+|+||-|+.+..+|+++|+||.+-.-.-..+ ...-.|+|.- +|. .. +...+.+-+.|.+
T Consensus 2 l~~~l~d~pG~L~~vL~~f~~~~vni~~I~Srp~~~~~~~~~f~id~--~~~-~~-~~~~~~~l~~l~~ 66 (75)
T cd04880 2 LVFSLKNKPGALAKALKVFAERGINLTKIESRPSRKGLWEYEFFVDF--EGH-ID-DPDVKEALEELKR 66 (75)
T ss_pred EEEEeCCcCCHHHHHHHHHHHCCCCEEEEEeeecCCCCceEEEEEEE--ECC-CC-CHHHHHHHHHHHH
Confidence 445668999999999999999999999885554433 2233466665 343 11 2444444444443
No 155
>cd04930 ACT_TH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines (dopamine, noradrenaline and adrenaline), functioning as hormones and neurotransmitters. The enzyme is not regulated by its amino acid substrate, but instead by phosphorylation at several serine residues located N-terminal of the ACT domain, and by feedback inhibition by catecholamines at the active site. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=94.17 E-value=0.25 Score=40.34 Aligned_cols=53 Identities=11% Similarity=0.079 Sum_probs=42.5
Q ss_pred cEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCeee-eEEEEEeCCCC
Q 022480 217 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAK-DKFHVSYGGAA 269 (296)
Q Consensus 217 ~TvleV~t~DRPGLL~dIt~~La~~gv~I~~AkI~T~G~ra~-D~F~V~~~g~~ 269 (296)
.|.|-+...|+||-|++|.+.|+.+|||+.+.+.-..+..-. =.|||.-+|+.
T Consensus 41 ktSlifsl~~~pGsL~~iL~~Fa~~gINLt~IESRP~~~~~~eY~FfIdieg~~ 94 (115)
T cd04930 41 KATLLFSLKEGFSSLSRILKVFETFEAKIHHLESRPSRKEGGDLEVLVRCEVHR 94 (115)
T ss_pred cEEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEECCcCCCCCceEEEEEEEEeCH
Confidence 467777779999999999999999999999999877655533 46788646653
No 156
>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.
Probab=94.16 E-value=0.21 Score=52.56 Aligned_cols=63 Identities=19% Similarity=0.191 Sum_probs=45.9
Q ss_pred cEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecC-CeeeeEEEEEeCCCCCChHHHHHHHHHHH
Q 022480 217 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEG-LVAKDKFHVSYGGAALNSSLSQVLVNCLR 283 (296)
Q Consensus 217 ~TvleV~t~DRPGLL~dIt~~La~~gv~I~~AkI~T~G-~ra~D~F~V~~~g~~L~~~~~~~L~~~L~ 283 (296)
.+.|.|.+.||+|+|++|+++|+..++||.++.+.+.. +.+.-.|.|.=.+ -.++..|...|+
T Consensus 610 ~v~I~I~~~dr~GlLadI~~~ia~~~~nI~~v~~~~~~~~~~~~~~~ieV~~----~~~L~~ii~~L~ 673 (683)
T TIGR00691 610 IVDINIEAVDRKGVLSDLTTAISENDSNIVSISTKTYGKREAILNITVEIKN----YKHLLKIMLKIK 673 (683)
T ss_pred EEEEEEEEecCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCEEEEEEEEEECC----HHHHHHHHHHHh
Confidence 57899999999999999999999999999999998764 4443344442111 114555555554
No 157
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=94.15 E-value=0.11 Score=51.24 Aligned_cols=60 Identities=20% Similarity=0.317 Sum_probs=47.6
Q ss_pred CcEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCeeeeEEEEEeCCCCCChHHHHHH
Q 022480 216 KRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGGAALNSSLSQVL 278 (296)
Q Consensus 216 ~~TvleV~t~DRPGLL~dIt~~La~~gv~I~~AkI~T~G~ra~D~F~V~~~g~~L~~~~~~~L 278 (296)
....|-+.-.|+||.++.|+.+|+++|+||...+....|+.+.-+|.+ ++ ++.++.+++|
T Consensus 337 ~~~rlii~h~d~pG~ia~it~~l~~~~iNI~~m~~~~~~~~A~~iie~--D~-~~~~~~~~~i 396 (409)
T PRK11790 337 GGHRLLHIHENRPGVLAAINQIFAEQGINIAAQYLQTDGEIGYVVIDV--DA-DYAEEALDAL 396 (409)
T ss_pred CCceEEEEeCCCCCHHHHHHHHHHhcCCCHHHheeccCCCEEEEEEEe--CC-CCcHHHHHHH
Confidence 457778899999999999999999999999999999999777766655 44 4444333444
No 158
>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional
Probab=94.05 E-value=0.37 Score=50.87 Aligned_cols=64 Identities=16% Similarity=0.128 Sum_probs=48.0
Q ss_pred eEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEeCCeEE-EEEEEeecCCCCCCCChHHHHHHHHHHHH
Q 022480 102 ATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQ-TKFFITRLDTGRKVEDPDLLERIRLTIIN 172 (296)
Q Consensus 102 ~t~V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~~~~~~-d~F~V~~~~~g~~l~~~~~l~~L~~~L~~ 172 (296)
.+.|.|.+.||+|+|++|+.+++..++||.+..+.+..++.. -.|.|.- .+.+.+.+|-..|..
T Consensus 626 ~v~i~I~~~dr~GlL~dI~~~i~~~~~nI~~v~~~~~~~~~~~~~~~ieV-------~~~~~L~~i~~~Lr~ 690 (702)
T PRK11092 626 IAEIKVEMFNHQGALANLTAAINTTGSNIQSLNTEEKDGRVYSAFIRLTA-------RDRVHLANIMRKIRV 690 (702)
T ss_pred EEEEEEEEeCCCCHHHHHHHHHHHCCCCeEEEEEEEcCCCEEEEEEEEEE-------CCHHHHHHHHHHHhC
Confidence 347889999999999999999999999999999877765443 3344432 233666666666654
No 159
>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]
Probab=93.86 E-value=0.38 Score=50.55 Aligned_cols=74 Identities=19% Similarity=0.185 Sum_probs=52.0
Q ss_pred EEEeecC-CCCeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEeCCeEEEE-EEEeecCCCCCCCChHHHHHHHHH
Q 022480 92 VLIDQDS-NSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTK-FFITRLDTGRKVEDPDLLERIRLT 169 (296)
Q Consensus 92 V~i~~~~-~~~~t~V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~~~~~~d~-F~V~~~~~g~~l~~~~~l~~L~~~ 169 (296)
|.|..+. ..-.+.|.|.+.||+|+|++|+.+|+..+.||.+....+..+++..+ |.+. +.+-..+.+|-..
T Consensus 616 v~W~~~~~~~f~~~i~v~~~~r~glL~~i~~~i~~~~~ni~~v~~~~~~~~~~~~~~~i~-------v~n~~~L~~i~~~ 688 (701)
T COG0317 616 VSWGPEYGQVYPVDIEIRAYDRSGLLRDVSQVLANEKINVLGVNTRSDKDQFATMQFTIE-------VKNLNHLGRVLAR 688 (701)
T ss_pred EEecCCCCcceEEEEEEEEccccchHHHHHHHHHhCCCceEEeeccccCCceEEEEEEEE-------ECcHHHHHHHHHH
Confidence 3444443 23446899999999999999999999999999999998875555432 3232 2233566666666
Q ss_pred HHH
Q 022480 170 IIN 172 (296)
Q Consensus 170 L~~ 172 (296)
|++
T Consensus 689 l~~ 691 (701)
T COG0317 689 LKQ 691 (701)
T ss_pred Hhc
Confidence 554
No 160
>COG0077 PheA Prephenate dehydratase [Amino acid transport and metabolism]
Probab=93.72 E-value=0.33 Score=45.64 Aligned_cols=56 Identities=14% Similarity=0.280 Sum_probs=45.6
Q ss_pred CcEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecC-CeeeeEEEEEeCCCCCC
Q 022480 216 KRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEG-LVAKDKFHVSYGGAALN 271 (296)
Q Consensus 216 ~~TvleV~t~DRPGLL~dIt~~La~~gv~I~~AkI~T~G-~ra~D~F~V~~~g~~L~ 271 (296)
..|.|-+..+|+||-|+++...|+.+|||+.+.+..-.+ ....=+|||.-+|+.-.
T Consensus 193 ~kTsl~f~~~n~PGaL~~~L~~Fa~~gINlTkIESRP~k~~~~~Y~F~iD~eg~~~~ 249 (279)
T COG0077 193 EKTSLIFSVPNKPGALYKALGVFAKRGINLTKIESRPLKTGLGEYLFFIDIEGHIDD 249 (279)
T ss_pred ceEEEEEEcCCCCchHHHHHHHHHHcCcceeeEeecccCCCCeeEEEEEEEecCcCc
Confidence 378888888999999999999999999999999997555 44566788854676543
No 161
>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.
Probab=93.63 E-value=0.53 Score=49.58 Aligned_cols=64 Identities=19% Similarity=0.202 Sum_probs=47.4
Q ss_pred eEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEeCCeEE-EEEEEeecCCCCCCCChHHHHHHHHHHHH
Q 022480 102 ATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQ-TKFFITRLDTGRKVEDPDLLERIRLTIIN 172 (296)
Q Consensus 102 ~t~V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~~~~~~-d~F~V~~~~~g~~l~~~~~l~~L~~~L~~ 172 (296)
.+.|.|.+.||+|+|++|+.+|+..++||.+..+.+..++.. -.|.|.- .+...+.+|-..|..
T Consensus 610 ~v~I~I~~~dr~GlLadI~~~ia~~~~nI~~v~~~~~~~~~~~~~~~ieV-------~~~~~L~~ii~~L~~ 674 (683)
T TIGR00691 610 IVDINIEAVDRKGVLSDLTTAISENDSNIVSISTKTYGKREAILNITVEI-------KNYKHLLKIMLKIKT 674 (683)
T ss_pred EEEEEEEEecCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCEEEEEEEEEE-------CCHHHHHHHHHHHhC
Confidence 357889999999999999999999999999999987755443 2344432 233566666665554
No 162
>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=93.36 E-value=0.46 Score=34.50 Aligned_cols=59 Identities=12% Similarity=0.107 Sum_probs=40.3
Q ss_pred EEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCeeeeEEEEEe-CCCCCChHHHHHHHHHHHH
Q 022480 221 YIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSY-GGAALNSSLSQVLVNCLRY 284 (296)
Q Consensus 221 eV~t~DRPGLL~dIt~~La~~gv~I~~AkI~T~G~ra~D~F~V~~-~g~~L~~~~~~~L~~~L~~ 284 (296)
.|.-+||||=|.+++++++. |.||...+-.-.+.....++..-. .+ .++.++|.++|++
T Consensus 2 ~v~ipdkPG~l~~~~~~i~~-~~nI~~~~~~~~~~~~~~v~v~ie~~~----~~~~~~i~~~L~~ 61 (68)
T cd04885 2 AVTFPERPGALKKFLELLGP-PRNITEFHYRNQGGDEARVLVGIQVPD----REDLAELKERLEA 61 (68)
T ss_pred EEECCCCCCHHHHHHHHhCC-CCcEEEEEEEcCCCCceEEEEEEEeCC----HHHHHHHHHHHHH
Confidence 57789999999999999999 999998877654422223332222 33 2356677777764
No 163
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=93.08 E-value=0.89 Score=34.63 Aligned_cols=61 Identities=8% Similarity=0.169 Sum_probs=38.6
Q ss_pred EEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEeCCeEEEEEE-EeecCCCCCCCChHHHHHHHHHHHH
Q 022480 104 IVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFF-ITRLDTGRKVEDPDLLERIRLTIIN 172 (296)
Q Consensus 104 ~V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~~~~~~d~F~-V~~~~~g~~l~~~~~l~~L~~~L~~ 172 (296)
++.|.-+|+||-|.+++.+|. +.||....-.....+.....+ +... +| ++..+.+.+.|++
T Consensus 3 vl~v~ipD~PG~L~~ll~~l~--~anI~~~~y~~~~~~~~~v~i~ie~~-~~-----~~~~~~i~~~L~~ 64 (85)
T cd04906 3 LLAVTIPERPGSFKKFCELIG--PRNITEFNYRYADEKDAHIFVGVSVA-NG-----AEELAELLEDLKS 64 (85)
T ss_pred EEEEecCCCCcHHHHHHHHhC--CCceeEEEEEccCCCeeEEEEEEEeC-Cc-----HHHHHHHHHHHHH
Confidence 578889999999999999999 777775444433323332233 3321 11 3556667766654
No 164
>PRK08210 aspartate kinase I; Reviewed
Probab=92.93 E-value=5.5 Score=38.96 Aligned_cols=99 Identities=16% Similarity=0.255 Sum_probs=63.5
Q ss_pred CeEEEEEEeCCC-ccHHHHHHHHHHHCCceEEEEEEEEeCCeEEEEEEEeecCCCCCCCChHHHHHHHHHHHHhhcccCC
Q 022480 101 DATIVQLSFGDR-LGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLKYHP 179 (296)
Q Consensus 101 ~~t~V~V~~~Dr-pGLLa~i~~vL~~~glnI~~A~I~T~~~~~~d~F~V~~~~~g~~l~~~~~l~~L~~~L~~~L~~~~~ 179 (296)
+...|+|...+. +|.++++...|.++|+||..-..+ .+.. .|.+.. +..+++...|.+ + + .
T Consensus 270 ~i~~isv~~~~~~~g~la~If~~L~~~~I~i~~i~~~--~~~i--s~~v~~----------~~~~~a~~~l~~-~-~--~ 331 (403)
T PRK08210 270 NVTQIKVKAKENAYDLQQEVFKALAEAGISVDFINIF--PTEV--VFTVSD----------EDSEKAKEILEN-L-G--L 331 (403)
T ss_pred CcEEEEEecCCCcchHHHHHHHHHHHcCCeEEEEEec--CceE--EEEEcH----------HHHHHHHHHHHH-h-C--C
Confidence 445677766555 999999999999999999977444 2221 244432 122333322222 1 0 0
Q ss_pred CchhHhhhccccCccCCCccccccccceeeeccCCCCcEEEEEEeC---CCcchHHHHHHHHHhCCceEEE
Q 022480 180 ESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIETA---DRPGLLVEIMKIIADVNVDVES 247 (296)
Q Consensus 180 ~~~~~La~~~~~~~~~~~r~~~~~~~~~V~v~~~~~~~TvleV~t~---DRPGLL~dIt~~La~~gv~I~~ 247 (296)
.+.+.+ +...|.|.+. ++||++.++.++|.+.|++|.+
T Consensus 332 ---------------------------~v~~~~---~~a~isvvG~~~~~~~g~~~~i~~aL~~~~I~i~~ 372 (403)
T PRK08210 332 ---------------------------KPSVRE---NCAKVSIVGAGMAGVPGVMAKIVTALSEEGIEILQ 372 (403)
T ss_pred ---------------------------cEEEeC---CcEEEEEEcCCcCCCccHHHHHHHHHHhCCCCEEE
Confidence 011112 3567777665 8999999999999999999974
No 165
>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]
Probab=92.77 E-value=0.54 Score=49.41 Aligned_cols=43 Identities=19% Similarity=0.281 Sum_probs=37.4
Q ss_pred cEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCeeee
Q 022480 217 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKD 259 (296)
Q Consensus 217 ~TvleV~t~DRPGLL~dIt~~La~~gv~I~~AkI~T~G~ra~D 259 (296)
.+.|.|.+.||+|||.+|+++|+..++||......+.+.+...
T Consensus 627 ~~~i~v~~~~r~glL~~i~~~i~~~~~ni~~v~~~~~~~~~~~ 669 (701)
T COG0317 627 PVDIEIRAYDRSGLLRDVSQVLANEKINVLGVNTRSDKDQFAT 669 (701)
T ss_pred EEEEEEEEccccchHHHHHHHHHhCCCceEEeeccccCCceEE
Confidence 6789999999999999999999999999999999876444333
No 166
>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe. In PAH, an autoregulatory sequence, N-terminal of the ACT domain, extends across the catalytic domain active site and regulates the enzyme by intrasteric regulation. It appears that the activation by L-Phe induces a conformational change that converts the enzyme to a high-affinity and high-activity state. Modulation of activity is achieved through inhibition by BH4 and activation by phosphorylation of serine residues of the autoregulatory region. The molecular basis for the cooperative activation process is not fully understood yet. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=92.71 E-value=2 Score=33.49 Aligned_cols=70 Identities=14% Similarity=0.279 Sum_probs=46.7
Q ss_pred CCeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEeCCe-EEEEEEEeecCCCCCCCChHHHHHHHHHHHHhh
Q 022480 100 SDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSV-KQTKFFITRLDTGRKVEDPDLLERIRLTIINNL 174 (296)
Q Consensus 100 ~~~t~V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~~~~-~~d~F~V~~~~~g~~l~~~~~l~~L~~~L~~~L 174 (296)
.+.+.+.+..+|+||-|+++-.+|+.+|+|+.+-.-.-.... +.-.|+|.- +|. .+ ..++.+-..|.+.+
T Consensus 12 ~~ktslif~l~~~pGsL~~vL~~Fa~~~INLt~IeSRP~~~~~~~Y~FfVDi--eg~--~~-~~~~~~l~~L~~~~ 82 (90)
T cd04931 12 NGVISLIFSLKEEVGALAKVLRLFEEKDINLTHIESRPSRLNKDEYEFFINL--DKK--SA-PALDPIIKSLRNDI 82 (90)
T ss_pred CCcEEEEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEE--EcC--CC-HHHHHHHHHHHHHh
Confidence 344677777799999999999999999999987666555432 234577776 454 13 34344444444433
No 167
>cd04871 ACT_PSP_2 ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_2 CD includes the second of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains
Probab=92.68 E-value=0.076 Score=40.77 Aligned_cols=32 Identities=22% Similarity=0.198 Sum_probs=29.0
Q ss_pred EEEEEeCC-CccHHHHHHHHHHHCCceEEEEEE
Q 022480 104 IVQLSFGD-RLGALIDTMNALKDLGLDVAKGTV 135 (296)
Q Consensus 104 ~V~V~~~D-rpGLLa~i~~vL~~~glnI~~A~I 135 (296)
+|+|.|+| +.|++++++++|+++|+||.+-+-
T Consensus 1 ivtvlg~~~~a~~ia~Vs~~lA~~~~NI~~I~~ 33 (84)
T cd04871 1 IVTLLGRPLTAEQLAAVTRVVADQGLNIDRIRR 33 (84)
T ss_pred CEEEEcCcCCHHHHHHHHHHHHHcCCCHHHHHH
Confidence 47999999 999999999999999999986554
No 168
>PRK08818 prephenate dehydrogenase; Provisional
Probab=92.49 E-value=0.29 Score=47.78 Aligned_cols=51 Identities=18% Similarity=0.326 Sum_probs=40.8
Q ss_pred CcEEEEEEeC-CCcchHHHHHHHHHhCCceEEEEEEEecCCeeeeEEEEEeCC
Q 022480 216 KRSLLYIETA-DRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGG 267 (296)
Q Consensus 216 ~~TvleV~t~-DRPGLL~dIt~~La~~gv~I~~AkI~T~G~ra~D~F~V~~~g 267 (296)
..+.|.+.-+ |+||-|++|..+|+++||||.+.++ .....-.-.|+|.-.+
T Consensus 294 ~~~~l~~~v~~d~pG~L~~vl~~la~~~INit~Ies-~~~r~~~y~f~i~~~~ 345 (370)
T PRK08818 294 EPLTLSVYLPEDRPGSLRTLLHVFEQHGVNLSSIHS-SRTPAGELHFRIGFEP 345 (370)
T ss_pred cceEEEEECCCCCCChHHHHHHHHHHcCcccceEEE-ecccCceEEEEEEEec
Confidence 4677888886 9999999999999999999999999 4443344449987433
No 169
>PRK10622 pheA bifunctional chorismate mutase/prephenate dehydratase; Provisional
Probab=92.40 E-value=0.9 Score=44.63 Aligned_cols=54 Identities=17% Similarity=0.214 Sum_probs=43.6
Q ss_pred CcEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecC-CeeeeEEEEEeCCCC
Q 022480 216 KRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEG-LVAKDKFHVSYGGAA 269 (296)
Q Consensus 216 ~~TvleV~t~DRPGLL~dIt~~La~~gv~I~~AkI~T~G-~ra~D~F~V~~~g~~ 269 (296)
..|.|-+...|+||.|+++.+.|+.+|||+.+.+---.+ ..-+=.|||.-+|+.
T Consensus 296 ~ktsl~~~~~~~pGaL~~~L~~Fa~~giNLtkIeSRP~~~~~~~Y~Ffid~eg~~ 350 (386)
T PRK10622 296 AKTTLLMATGQQAGALVEALLVLRNHNLIMTKLESRPIHGNPWEEMFYLDVQANL 350 (386)
T ss_pred CcEEEEEEcCCCCcHHHHHHHHHHHcCCCeeEEEeeecCCCCceEEEEEEEeCCC
Confidence 356677777899999999999999999999999997544 446667888657754
No 170
>cd04871 ACT_PSP_2 ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_2 CD includes the second of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains
Probab=92.32 E-value=0.091 Score=40.31 Aligned_cols=64 Identities=16% Similarity=0.199 Sum_probs=42.6
Q ss_pred EEEEEeCC-CcchHHHHHHHHHhCCceEEEEEEEe-----cC----CeeeeEEEEEeCCCCCChHHHHHHHHHHHHHcC
Q 022480 219 LLYIETAD-RPGLLVEIMKIIADVNVDVESAEIDT-----EG----LVAKDKFHVSYGGAALNSSLSQVLVNCLRYYLR 287 (296)
Q Consensus 219 vleV~t~D-RPGLL~dIt~~La~~gv~I~~AkI~T-----~G----~ra~D~F~V~~~g~~L~~~~~~~L~~~L~~~l~ 287 (296)
+|+|.+.| ++|++++|+++|+++|+||...+--+ .+ .+..-.|.++ |.+.. .+.|+++|...-.
T Consensus 1 ivtvlg~~~~a~~ia~Vs~~lA~~~~NI~~I~~l~~~~~~~~~~~~~~~~~e~~v~--~~~~~---~~~lr~~L~~la~ 74 (84)
T cd04871 1 IVTLLGRPLTAEQLAAVTRVVADQGLNIDRIRRLSGRVPLEEQDDSPKACVEFSVR--GQPAD---LEALRAALLELAS 74 (84)
T ss_pred CEEEEcCcCCHHHHHHHHHHHHHcCCCHHHHHHhhccccccccCCCCcEEEEEEEe--CCCCC---HHHHHHHHHHHhc
Confidence 47889999 99999999999999999997655421 12 1333356664 44422 3456666664433
No 171
>TIGR00657 asp_kinases aspartate kinase. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. This may be a feature of a number of closely related forms, including a paralog from B. subtilis.
Probab=92.18 E-value=5 Score=39.77 Aligned_cols=108 Identities=16% Similarity=0.220 Sum_probs=64.5
Q ss_pred CeEEEEEEeCCC--ccHHHHHHHHHHHCCceEEEEEEEEeCCeEEEEEEEeecCCCCCCCChHHHHHHHHHHHHhhcccC
Q 022480 101 DATIVQLSFGDR--LGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLKYH 178 (296)
Q Consensus 101 ~~t~V~V~~~Dr--pGLLa~i~~vL~~~glnI~~A~I~T~~~~~~d~F~V~~~~~g~~l~~~~~l~~L~~~L~~~L~~~~ 178 (296)
+...|+|.+.+- +|.++++.+.|.++|++|......+.... -.|.|... ..++..+.|.. +...
T Consensus 301 ~v~~Isv~g~~~~~~g~la~if~~L~~~~I~I~~i~q~~se~s--Is~~I~~~----------~~~~a~~~L~~-~~~~- 366 (441)
T TIGR00657 301 NQARVTVSGLGMKGPGFLARVFGALAEAGINVDLITQSSSETS--ISFTVDKE----------DADQAKTLLKS-ELNL- 366 (441)
T ss_pred CEEEEEEECCCCCCccHHHHHHHHHHHcCCeEEEEEecCCCce--EEEEEEHH----------HHHHHHHHHHH-HHHh-
Confidence 445667765333 79999999999999999986643222211 12444331 11222222221 1100
Q ss_pred CCchhHhhhccccCccCCCccccccccceeeeccCCCCcEEEEEEe---CCCcchHHHHHHHHHhCCceEEEEE
Q 022480 179 PESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIET---ADRPGLLVEIMKIIADVNVDVESAE 249 (296)
Q Consensus 179 ~~~~~~La~~~~~~~~~~~r~~~~~~~~~V~v~~~~~~~TvleV~t---~DRPGLL~dIt~~La~~gv~I~~Ak 249 (296)
. ....|.+.+ +.+.|.|.+ .++||++++|.++|++.|++|....
T Consensus 367 ~------------------------~~~~I~~~~---~~a~VsvvG~~~~~~~g~~a~if~~La~~~Inv~~i~ 413 (441)
T TIGR00657 367 S------------------------ALSSVEVEK---GLAKVSLVGAGMKSAPGVASKIFEALAQNGINIEMIS 413 (441)
T ss_pred c------------------------CcceEEEcC---CeEEEEEEcCCCCCCCchHHHHHHHHHHCCCCEEEEE
Confidence 0 001122222 357788865 4889999999999999999998776
No 172
>COG1707 ACT domain-containing protein [General function prediction only]
Probab=92.15 E-value=0.57 Score=40.96 Aligned_cols=61 Identities=23% Similarity=0.241 Sum_probs=42.7
Q ss_pred EEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCeeeeEEEEEeCCCCCChHHHHHHHHHHH
Q 022480 219 LLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGGAALNSSLSQVLVNCLR 283 (296)
Q Consensus 219 vleV~t~DRPGLL~dIt~~La~~gv~I~~AkI~T~G~ra~D~F~V~~~g~~L~~~~~~~L~~~L~ 283 (296)
-+.+.+.++||.|.+++-.+++.|.||.+++-...++--....|..-+|-. + .+.|.+.|+
T Consensus 4 ~lsi~~enk~GvL~~ltgiiae~ggNIt~~q~~~~~~g~~~~iYmEiEgi~--d--~e~l~~~lk 64 (218)
T COG1707 4 GLSIIAENKPGVLRDLTGIIAEEGGNITYAQQFLEKDGEKALIYMEIEGID--D--FEKLLERLK 64 (218)
T ss_pred eeEEEeecCccHHHHHHHHHHhcCCceEeeehhhhccCceEEEEEEeeCCC--C--HHHHHHHhh
Confidence 367889999999999999999999999999987655433344444334433 1 344545444
No 173
>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional
Probab=92.12 E-value=9.8 Score=41.04 Aligned_cols=113 Identities=12% Similarity=0.212 Sum_probs=69.9
Q ss_pred CCeEEEEEEeC---CCccHHHHHHHHHHHCCceEEEEEEEEeCCeEEEEEEEeecCCCCCCCChHHHHHHHHHHHHhhcc
Q 022480 100 SDATIVQLSFG---DRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLK 176 (296)
Q Consensus 100 ~~~t~V~V~~~---DrpGLLa~i~~vL~~~glnI~~A~I~T~~~~~~d~F~V~~~~~g~~l~~~~~l~~L~~~L~~~L~~ 176 (296)
.+...|+|.+. +++|+++++...|.++|+||......+....+ .|.|.. +..++..+.|.+.+..
T Consensus 313 ~dvalIsV~G~gm~~~~G~~arIf~~La~~gI~V~mIsqssSe~sI--sf~V~~----------~d~~~av~~L~~~f~~ 380 (819)
T PRK09436 313 NNMAMFNVSGPGMKGMVGMASRVFAALSRAGISVVLITQSSSEYSI--SFCVPQ----------SDAAKAKRALEEEFAL 380 (819)
T ss_pred CCEEEEEEEcCCCCCCcCHHHHHHHHHHHCCCcEEEEEcCCCCceE--EEEEeH----------HHHHHHHHHHHHHHHH
Confidence 45667888754 68999999999999999999765443322111 244443 1222233333332211
Q ss_pred cCCCchhHhhhccccCccCCCccccccccceeeeccCCCCcEEEEEEeC---CCcchHHHHHHHHHhCCceEEEEE
Q 022480 177 YHPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIETA---DRPGLLVEIMKIIADVNVDVESAE 249 (296)
Q Consensus 177 ~~~~~~~~La~~~~~~~~~~~r~~~~~~~~~V~v~~~~~~~TvleV~t~---DRPGLL~dIt~~La~~gv~I~~Ak 249 (296)
.+. . .+ ...|.+.+ +...|.|.+. ++||++.++.++|.+.|++|....
T Consensus 381 -------el~----~-----~~------~~~i~~~~---~valIsvvG~gm~~~~gv~arif~aL~~~~InI~~Is 431 (819)
T PRK09436 381 -------ELK----E-----GL------LEPLEVEE---NLAIISVVGDGMRTHPGIAAKFFSALGRANINIVAIA 431 (819)
T ss_pred -------Hhc----c-----CC------cceEEEeC---CEEEEEEEccCcccCcCHHHHHHHHHHHCCCCEEEEE
Confidence 000 0 00 01122222 4677888776 799999999999999999998774
No 174
>PLN02551 aspartokinase
Probab=92.05 E-value=12 Score=38.19 Aligned_cols=114 Identities=16% Similarity=0.248 Sum_probs=69.6
Q ss_pred CCeEEEEEEeC---CCccHHHHHHHHHHHCCceEEEEEEEEeCCeEEEEEEEeecCCCCCCCChHHHHHHHHHHHHhhcc
Q 022480 100 SDATIVQLSFG---DRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLK 176 (296)
Q Consensus 100 ~~~t~V~V~~~---DrpGLLa~i~~vL~~~glnI~~A~I~T~~~~~~d~F~V~~~~~g~~l~~~~~l~~L~~~L~~~L~~ 176 (296)
.+.+.|+|.+. +++|.++++...|.++|++|.--. +. +.- -.|.+... + + ...+.+++.|...+..
T Consensus 364 ~~v~li~i~~~~m~~~~g~~arvf~~l~~~~I~Vd~Is--sS-e~s-Is~~v~~~-~---~---~~~~~i~~~l~~l~~e 432 (521)
T PLN02551 364 RNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVA--TS-EVS-ISLTLDPS-K---L---WSRELIQQELDHLVEE 432 (521)
T ss_pred CCeEEEEEecCCCCCcccHHHHHHHHHHHcCCcEEEEe--cc-CCE-EEEEEehh-H---h---hhhhhHHHHHHHHHHH
Confidence 35567788655 689999999999999999998652 22 211 13555432 1 1 1123344344332211
Q ss_pred cCCCchhHhhhccccCccCCCccccccccceeeeccCCCCcEEEEEEeC--CCcchHHHHHHHHHhCCceEEEEEEEe
Q 022480 177 YHPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIETA--DRPGLLVEIMKIIADVNVDVESAEIDT 252 (296)
Q Consensus 177 ~~~~~~~~La~~~~~~~~~~~r~~~~~~~~~V~v~~~~~~~TvleV~t~--DRPGLL~dIt~~La~~gv~I~~AkI~T 252 (296)
+. + + ..|.+.+ +...|.|.+. .+||+++++.++|++.||||......+
T Consensus 433 --------l~-----------~---~---~~V~v~~---~vAiISvVG~~~~~~gvaariF~aLa~~gInV~mIsqga 482 (521)
T PLN02551 433 --------LE-----------K---I---AVVNLLQ---GRSIISLIGNVQRSSLILEKVFRVLRTNGVNVQMISQGA 482 (521)
T ss_pred --------hh-----------c---C---CeEEEeC---CEEEEEEEccCCCCccHHHHHHHHHHHCCCCeEEEEecC
Confidence 10 0 0 1122222 3566666654 689999999999999999998876433
No 175
>COG1707 ACT domain-containing protein [General function prediction only]
Probab=92.01 E-value=0.54 Score=41.10 Aligned_cols=47 Identities=11% Similarity=0.134 Sum_probs=39.6
Q ss_pred EEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEeCCeEEEEEEEee
Q 022480 104 IVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITR 150 (296)
Q Consensus 104 ~V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~~~~~~d~F~V~~ 150 (296)
-+.+.+.++||.|.+++++++++|.||..++.+..+++-....|..-
T Consensus 4 ~lsi~~enk~GvL~~ltgiiae~ggNIt~~q~~~~~~g~~~~iYmEi 50 (218)
T COG1707 4 GLSIIAENKPGVLRDLTGIIAEEGGNITYAQQFLEKDGEKALIYMEI 50 (218)
T ss_pred eeEEEeecCccHHHHHHHHHHhcCCceEeeehhhhccCceEEEEEEe
Confidence 46788999999999999999999999999999999887543344443
No 176
>PRK07431 aspartate kinase; Provisional
Probab=91.96 E-value=17 Score=37.51 Aligned_cols=136 Identities=14% Similarity=0.166 Sum_probs=79.5
Q ss_pred CeEEEEEE-eCCCccHHHHHHHHHHHCCceEEEEEEEEeCC--eEEE-EEEEeecCCCCCCCChHHHHHHHHHHHHhhcc
Q 022480 101 DATIVQLS-FGDRLGALIDTMNALKDLGLDVAKGTVNTEGS--VKQT-KFFITRLDTGRKVEDPDLLERIRLTIINNLLK 176 (296)
Q Consensus 101 ~~t~V~V~-~~DrpGLLa~i~~vL~~~glnI~~A~I~T~~~--~~~d-~F~V~~~~~g~~l~~~~~l~~L~~~L~~~L~~ 176 (296)
+...|++. .++++|+++++.+.|.++|++|..-......+ +..+ .|.+.. +.+.++...+.+ +..
T Consensus 438 ~~~~i~l~~~~~~~g~~a~if~~l~~~~i~id~i~~~~~~~~~~~~~isf~v~~----------~~~~~~~~~l~~-l~~ 506 (587)
T PRK07431 438 NQAQLAIRNVPDRPGMAASIFGALAEANISVDMIVQSQRCRSDGTRDISFTVPK----------EDREAAQKVLRE-LAK 506 (587)
T ss_pred CEEEEEECCCCCCccHHHHHHHHHHHcCCeEEEEEecCCCCCCCceeEEEEEcH----------HHHHHHHHHHHH-HHH
Confidence 44455554 67889999999999999999998764432222 2232 243332 222222222222 211
Q ss_pred cCCCchhHhhhccccCccCCCccccccccceeeeccCCCCcEEEEEEeC---CCcchHHHHHHHHHhCCceEEEEEEEec
Q 022480 177 YHPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIETA---DRPGLLVEIMKIIADVNVDVESAEIDTE 253 (296)
Q Consensus 177 ~~~~~~~~La~~~~~~~~~~~r~~~~~~~~~V~v~~~~~~~TvleV~t~---DRPGLL~dIt~~La~~gv~I~~AkI~T~ 253 (296)
. .. ...+.+.+ +...|.|.+. .+||+++++.++|.+.|++|.... |
T Consensus 507 ~-~~------------------------~~~i~~~~---~va~VSvVG~gm~~~~gv~~ri~~aL~~~~I~v~~i~--~- 555 (587)
T PRK07431 507 Q-LP------------------------GAEVEDGP---AIAKVSIVGAGMPGTPGVAARMFRALADAGINIEMIA--T- 555 (587)
T ss_pred h-cC------------------------CceEEEeC---CeEEEEEECCCccCCcCHHHHHHHHHHHCCCcEEEee--c-
Confidence 0 00 01122222 3577888876 899999999999999999997665 2
Q ss_pred CCeeeeE-EEEEeCCCCCChHHHHHHHHHHHHHcC
Q 022480 254 GLVAKDK-FHVSYGGAALNSSLSQVLVNCLRYYLR 287 (296)
Q Consensus 254 G~ra~D~-F~V~~~g~~L~~~~~~~L~~~L~~~l~ 287 (296)
....+ |.|.. +..++...+|...+.
T Consensus 556 --S~~~Is~vV~~-------~~~~~av~~Lh~~f~ 581 (587)
T PRK07431 556 --SEIRTSCVVAE-------DDGVKALQAVHQAFG 581 (587)
T ss_pred --cceEEEEEEeH-------HHHHHHHHHHHHHhc
Confidence 33333 55522 234556677776663
No 177
>PF13840 ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2_O 2DTJ_A 3AAW_A 2RE1_B 3MAH_A 1ZVP_D.
Probab=91.84 E-value=0.53 Score=34.17 Aligned_cols=36 Identities=17% Similarity=0.196 Sum_probs=30.5
Q ss_pred CCCeEEEEEEeC----CCccHHHHHHHHHHHCCceEEEEE
Q 022480 99 NSDATIVQLSFG----DRLGALIDTMNALKDLGLDVAKGT 134 (296)
Q Consensus 99 ~~~~t~V~V~~~----DrpGLLa~i~~vL~~~glnI~~A~ 134 (296)
+.++..|+|.++ |.||+++++.+.|++.|+||....
T Consensus 3 ~~~~~~i~v~g~g~~~~~~Gv~a~i~~~La~~~I~i~~is 42 (65)
T PF13840_consen 3 EEDWAKISVVGPGLRFDVPGVAAKIFSALAEAGINIFMIS 42 (65)
T ss_dssp ESEEEEEEEEEECGTTTSHHHHHHHHHHHHHTTS-ECEEE
T ss_pred cCCEEEEEEEccccCCCcccHHHHHHHHHHHCCCCEEEEE
Confidence 346678899988 799999999999999999998766
No 178
>TIGR00719 sda_beta L-serine dehydratase, iron-sulfur-dependent, beta subunit. This family of enzymes is not homologous to the pyridoxal phosphate-dependent threonine deaminases and eukaryotic serine deaminases.
Probab=91.69 E-value=1.2 Score=39.92 Aligned_cols=41 Identities=12% Similarity=0.299 Sum_probs=35.5
Q ss_pred CCeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEeCC
Q 022480 100 SDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGS 140 (296)
Q Consensus 100 ~~~t~V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~~~ 140 (296)
.....+.+.-.|+||.+.+++.+|.++|+||-..++.....
T Consensus 146 ~~g~~L~~~~~D~PG~Ig~vg~~Lg~~~iNIa~m~v~r~~~ 186 (208)
T TIGR00719 146 GEHPAILLEHNDKFGTIAGVANLLAGFEINIEHLETAKKDI 186 (208)
T ss_pred CCccEEEEEeCCCCChHHHHHHHHHhCCccEEEEEEEecCC
Confidence 34456777889999999999999999999999999988753
No 179
>PRK06545 prephenate dehydrogenase; Validated
Probab=91.47 E-value=0.4 Score=46.25 Aligned_cols=50 Identities=20% Similarity=0.413 Sum_probs=41.9
Q ss_pred CCcEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCeeeeEEEEE
Q 022480 215 PKRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVS 264 (296)
Q Consensus 215 ~~~TvleV~t~DRPGLL~dIt~~La~~gv~I~~AkI~T~G~ra~D~F~V~ 264 (296)
+.++.|.|.-+||||-|++|+..|.+.||||.+.+|.-..+...-++.+.
T Consensus 288 ~~~~~~~v~v~d~pg~~~~~~~~~~~~~i~i~~~~i~~~~~~~~g~~~~~ 337 (359)
T PRK06545 288 PSFYDLYVDVPDEPGVIARVTAILGEEGISIENLRILEAREDIHGVLQIS 337 (359)
T ss_pred CcceEEEEeCCCCCCHHHHHHHHHHHcCCCeecceeeeccCCcCceEEEE
Confidence 35799999999999999999999999999999999965555555555554
No 180
>PRK09034 aspartate kinase; Reviewed
Probab=91.32 E-value=13 Score=37.11 Aligned_cols=111 Identities=15% Similarity=0.257 Sum_probs=66.7
Q ss_pred CeEEEEEEe---CCCccHHHHHHHHHHHCCceEEEEEEEEeCCeEEEEEEEeecCCCCCCCChHHHHHHHHHHHHhhccc
Q 022480 101 DATIVQLSF---GDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLKY 177 (296)
Q Consensus 101 ~~t~V~V~~---~DrpGLLa~i~~vL~~~glnI~~A~I~T~~~~~~d~F~V~~~~~g~~l~~~~~l~~L~~~L~~~L~~~ 177 (296)
+.+.|+|.+ .+++|+++++..+|+++|+||.-- +.+. .--.|.|... + + +...+..+...|...+.
T Consensus 307 ~i~~Itv~~~~~~~~~g~~a~if~~la~~~I~Vd~i---~ss~-~sis~~v~~~-~---~-~~a~~~~l~~el~~~~~-- 375 (454)
T PRK09034 307 GFTSIYISKYLMNREVGFGRKVLQILEDHGISYEHM---PSGI-DDLSIIIRER-Q---L-TPKKEDEILAEIKQELN-- 375 (454)
T ss_pred CEEEEEEccCCCCCCccHHHHHHHHHHHcCCeEEEE---cCCC-cEEEEEEeHH-H---h-hHHHHHHHHHHHHHhhC--
Confidence 445677764 678999999999999999999874 2222 2123555432 1 1 00010222222211110
Q ss_pred CCCchhHhhhccccCccCCCccccccccceeeeccCCCCcEEEEEEeC---CCcchHHHHHHHHHhCCceEEEEEEEe
Q 022480 178 HPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIETA---DRPGLLVEIMKIIADVNVDVESAEIDT 252 (296)
Q Consensus 178 ~~~~~~~La~~~~~~~~~~~r~~~~~~~~~V~v~~~~~~~TvleV~t~---DRPGLL~dIt~~La~~gv~I~~AkI~T 252 (296)
. ..|.+.+ +...|.|.+. ++||++++|..+|++.|++|....-.+
T Consensus 376 --------------------------~-~~I~~~~---~va~VsivG~g~~~~~gv~arif~aL~~~~InV~mIsq~~ 423 (454)
T PRK09034 376 --------------------------P-DELEIEH---DLAIIMVVGEGMRQTVGVAAKITKALAEANINIQMINQGS 423 (454)
T ss_pred --------------------------C-ceEEEeC---CEEEEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecC
Confidence 0 0122222 3577777553 899999999999999999999885433
No 181
>PRK06382 threonine dehydratase; Provisional
Probab=91.28 E-value=0.56 Score=46.12 Aligned_cols=65 Identities=26% Similarity=0.302 Sum_probs=45.3
Q ss_pred CcEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEe----c-CCeeeeEEEEEeCCCCCChHHHHHHHHHHHH
Q 022480 216 KRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDT----E-GLVAKDKFHVSYGGAALNSSLSQVLVNCLRY 284 (296)
Q Consensus 216 ~~TvleV~t~DRPGLL~dIt~~La~~gv~I~~AkI~T----~-G~ra~D~F~V~~~g~~L~~~~~~~L~~~L~~ 284 (296)
..+.+.|.-+|+||-|.+|+++|.++|+||.+..... . .+.+.=.|.|...+ .+..++|.+.|++
T Consensus 329 ~~~rl~v~v~D~pG~L~~l~~ii~~~~~nI~~v~~~~~~~~~~~~~~~v~i~vet~~----~~~~~~v~~~L~~ 398 (406)
T PRK06382 329 QLVRIECNIPDRPGNLYRIANAIASNGGNIYHAEVDNLRKETPPGFQSVTFTVNVRG----QDHLDRILNALRE 398 (406)
T ss_pred CEEEEEEEcCCCCCHHHHHHHHHhcCCCcEEEEEEeeccccCCCCcEEEEEEEEeCC----HHHHHHHHHHHHH
Confidence 3689999999999999999999999999998877641 1 22344445553332 2234466666654
No 182
>PF13840 ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2_O 2DTJ_A 3AAW_A 2RE1_B 3MAH_A 1ZVP_D.
Probab=91.17 E-value=0.35 Score=35.11 Aligned_cols=43 Identities=14% Similarity=0.243 Sum_probs=33.5
Q ss_pred cEEEEEEeC----CCcchHHHHHHHHHhCCceEEEEEEEecCCeeeeEEEEE
Q 022480 217 RSLLYIETA----DRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVS 264 (296)
Q Consensus 217 ~TvleV~t~----DRPGLL~dIt~~La~~gv~I~~AkI~T~G~ra~D~F~V~ 264 (296)
...|.|.+. |.||++++|++.|++.||+|.... | .-.|.|.|.
T Consensus 6 ~~~i~v~g~g~~~~~~Gv~a~i~~~La~~~I~i~~is--S---~~~~~ilV~ 52 (65)
T PF13840_consen 6 WAKISVVGPGLRFDVPGVAAKIFSALAEAGINIFMIS--S---EISISILVK 52 (65)
T ss_dssp EEEEEEEEECGTTTSHHHHHHHHHHHHHTTS-ECEEE--E---SSEEEEEEE
T ss_pred EEEEEEEccccCCCcccHHHHHHHHHHHCCCCEEEEE--E---eeeEEEEEe
Confidence 567777777 899999999999999999998776 3 345666664
No 183
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=91.16 E-value=2 Score=32.66 Aligned_cols=61 Identities=18% Similarity=0.187 Sum_probs=37.3
Q ss_pred EEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEec-CCeeeeEEEEEeCCCCCChHHHHHHHHHHHH
Q 022480 219 LLYIETADRPGLLVEIMKIIADVNVDVESAEIDTE-GLVAKDKFHVSYGGAALNSSLSQVLVNCLRY 284 (296)
Q Consensus 219 vleV~t~DRPGLL~dIt~~La~~gv~I~~AkI~T~-G~ra~D~F~V~~~g~~L~~~~~~~L~~~L~~ 284 (296)
++.|.-+||||=|.+++++|... ||....-.-. .+.+.-.+.+.-.+. .++.+++.+.|++
T Consensus 3 vl~v~ipD~PG~L~~ll~~l~~a--nI~~~~y~~~~~~~~~v~i~ie~~~~---~~~~~~i~~~L~~ 64 (85)
T cd04906 3 LLAVTIPERPGSFKKFCELIGPR--NITEFNYRYADEKDAHIFVGVSVANG---AEELAELLEDLKS 64 (85)
T ss_pred EEEEecCCCCcHHHHHHHHhCCC--ceeEEEEEccCCCeeEEEEEEEeCCc---HHHHHHHHHHHHH
Confidence 57888999999999999999944 4443333322 234444444443331 2355666666654
No 184
>PRK08198 threonine dehydratase; Provisional
Probab=90.68 E-value=2.5 Score=41.35 Aligned_cols=66 Identities=17% Similarity=0.194 Sum_probs=45.8
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEe----CCeEEEEEEEeecCCCCCCCChHHHHHHHHHHHH
Q 022480 101 DATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTE----GSVKQTKFFITRLDTGRKVEDPDLLERIRLTIIN 172 (296)
Q Consensus 101 ~~t~V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~----~~~~~d~F~V~~~~~g~~l~~~~~l~~L~~~L~~ 172 (296)
....+.|.-+|+||-|++++..+.++|.||.+-..... +.+...+.+..+ . .+++..+.|.+.|++
T Consensus 326 r~~~l~v~l~D~PG~L~~ll~~i~~~g~NI~~i~~~~~~~~~~~~~~~v~v~ie--~----~~~~~~~~l~~~L~~ 395 (404)
T PRK08198 326 RYLKLRVRLPDRPGQLAKLLSIIAELGANVIDVDHDRFSPDLRLGEVEVELTLE--T----RGPEHIEEILDALRD 395 (404)
T ss_pred CEEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEEccCCCCCceEEEEEEEE--e----CCHHHHHHHHHHHHH
Confidence 34589999999999999999999999999999887642 223343333333 1 124555666666554
No 185
>PRK06349 homoserine dehydrogenase; Provisional
Probab=90.58 E-value=1.2 Score=44.06 Aligned_cols=50 Identities=26% Similarity=0.357 Sum_probs=39.9
Q ss_pred CcEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCeeeeEEEEEe
Q 022480 216 KRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSY 265 (296)
Q Consensus 216 ~~TvleV~t~DRPGLL~dIt~~La~~gv~I~~AkI~T~G~ra~D~F~V~~ 265 (296)
..+.|.+...|+||.|++|+.+|.++|++|.+..-....+....++.+++
T Consensus 347 ~~yylRl~v~d~pGvLa~I~~~f~~~~vsI~si~q~~~~~~~~~ivivT~ 396 (426)
T PRK06349 347 SKYYLRLLVADKPGVLAKIAAIFAENGISIESILQKGAGGEGAEIVIVTH 396 (426)
T ss_pred eeEEEEEEecCCcchHHHHHHHHhhcCccEEEEEeccCCCCceeEEEEEE
Confidence 46889999999999999999999999999998866543334455666665
No 186
>PRK09181 aspartate kinase; Validated
Probab=90.55 E-value=6.1 Score=39.93 Aligned_cols=105 Identities=11% Similarity=0.188 Sum_probs=66.4
Q ss_pred CeEEEEEEeC---CCccHHHHHHHHHHHCCceEEEEEEEEeCCeEEEEEEEeecCCCCCCCChHHHHHHHHHHHHhhccc
Q 022480 101 DATIVQLSFG---DRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLKY 177 (296)
Q Consensus 101 ~~t~V~V~~~---DrpGLLa~i~~vL~~~glnI~~A~I~T~~~~~~d~F~V~~~~~g~~l~~~~~l~~L~~~L~~~L~~~ 177 (296)
+.+.|+|.+. +.+|+.+++.+.|.++|++|. .+.+.... -.|.|.. + .+.++++.+.|...+..
T Consensus 328 ~~~~i~i~~~~~~~~~g~~~~if~~l~~~~i~v~--~i~ss~~s--is~~v~~--~------~~~~~~~~~~L~~~~~~- 394 (475)
T PRK09181 328 KVFALEVFDQDMVGEDGYDLEILEILTRHKVSYI--SKATNANT--ITHYLWG--S------LKTLKRVIAELEKRYPN- 394 (475)
T ss_pred CEEEEEEcCCCCCCcchHHHHHHHHHHHcCCeEE--EEEecCcE--EEEEEcC--C------hHHHHHHHHHHHHhcCC-
Confidence 5667777544 789999999999999999998 23333221 2354532 1 12334443333322210
Q ss_pred CCCchhHhhhccccCccCCCccccccccceeeeccCCCCcEEEEEEeCC--CcchHHHHHHHHHhCCceEEEEEE
Q 022480 178 HPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIETAD--RPGLLVEIMKIIADVNVDVESAEI 250 (296)
Q Consensus 178 ~~~~~~~La~~~~~~~~~~~r~~~~~~~~~V~v~~~~~~~TvleV~t~D--RPGLL~dIt~~La~~gv~I~~AkI 250 (296)
..|.. .+..+|.|.+.. +||+.+++.++|++.||||....-
T Consensus 395 ----------------------------~~i~~----~~~a~VsvVG~gm~~~gv~ak~f~aL~~~~Ini~~i~q 437 (475)
T PRK09181 395 ----------------------------AEVTV----RKVAIVSAIGSNIAVPGVLAKAVQALAEAGINVLALHQ 437 (475)
T ss_pred ----------------------------ceEEE----CCceEEEEeCCCCCcccHHHHHHHHHHHCCCCeEEEEe
Confidence 01111 235677777654 899999999999999999987653
No 187
>PRK07431 aspartate kinase; Provisional
Probab=90.49 E-value=8.7 Score=39.59 Aligned_cols=125 Identities=14% Similarity=0.248 Sum_probs=73.0
Q ss_pred CCeEEEEEEeC---CCccHHHHHHHHHHHCCceEEEEEEEEeCCeEEEEEEEeecCCCCCCCChHHHHHHHHHHHHhhcc
Q 022480 100 SDATIVQLSFG---DRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLK 176 (296)
Q Consensus 100 ~~~t~V~V~~~---DrpGLLa~i~~vL~~~glnI~~A~I~T~~~~~~d~F~V~~~~~g~~l~~~~~l~~L~~~L~~~L~~ 176 (296)
.+...|.|.|. +.+|+++++..+|.+.|+||..-. ..+..+ .|.|.. +..++.-+.|.+.+..
T Consensus 346 ~~~a~IsvvG~gm~~~~gi~~ki~~aL~~~~I~i~~i~---sSe~~I-s~vv~~----------~d~~~av~~Lh~~f~~ 411 (587)
T PRK07431 346 TNVAKLSISGAGMMGRPGIAAKMFDTLAEAGINIRMIS---TSEVKV-SCVIDA----------EDGDKALRAVCEAFEL 411 (587)
T ss_pred CCeEEEEEECCCcccCccHHHHHHHHHHHCCCcEEEEE---cCCCEE-EEEEcH----------HHHHHHHHHHHHHhcc
Confidence 45667888875 799999999999999999997554 222222 244443 2234444455555532
Q ss_pred cCCCchhHhhhccccCccCCCccccccccceeeeccCCCCcEEEEEE-eCCCcchHHHHHHHHHhCCceEEEEEEE
Q 022480 177 YHPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIE-TADRPGLLVEIMKIIADVNVDVESAEID 251 (296)
Q Consensus 177 ~~~~~~~~La~~~~~~~~~~~r~~~~~~~~~V~v~~~~~~~TvleV~-t~DRPGLL~dIt~~La~~gv~I~~AkI~ 251 (296)
+.. ...+. +..-+.....+ +-|... .+...|+|. ..++||++++|...|+++|++|.....+
T Consensus 412 ~~~--~~~~~-------~~~~~~~~~~v-~gIa~~---~~~~~i~l~~~~~~~g~~a~if~~l~~~~i~id~i~~~ 474 (587)
T PRK07431 412 EDS--QIEIN-------PTASGQDEPEV-RGVALD---RNQAQLAIRNVPDRPGMAASIFGALAEANISVDMIVQS 474 (587)
T ss_pred CCc--ccccC-------ccccCCCCCcE-EEEEcc---CCEEEEEECCCCCCccHHHHHHHHHHHcCCeEEEEEec
Confidence 100 00010 00000000001 112211 234556554 5688999999999999999999998553
No 188
>cd04935 ACT_AKiii-DAPDC_1 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. This CD includes the first of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=90.30 E-value=3.9 Score=30.51 Aligned_cols=57 Identities=12% Similarity=0.176 Sum_probs=38.2
Q ss_pred eCCCcchHHHHHHHHHhCCceEEEEEEEecCCeeeeEEEEEeCCCCCChHHHHHHHHHHHH
Q 022480 224 TADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGGAALNSSLSQVLVNCLRY 284 (296)
Q Consensus 224 t~DRPGLL~dIt~~La~~gv~I~~AkI~T~G~ra~D~F~V~~~g~~L~~~~~~~L~~~L~~ 284 (296)
..+.||++++|.++|+++|++|...-. ++ ..=.|-+.+...-+.++..++|.+.|+.
T Consensus 11 ~~~~~g~~~~IF~~La~~~I~vDmI~~---s~-~~isftv~~~~~~~~~~~~~~l~~el~~ 67 (75)
T cd04935 11 MWQQVGFLADVFAPFKKHGVSVDLVST---SE-TNVTVSLDPDPNGLDPDVLDALLDDLNQ 67 (75)
T ss_pred CCCccCHHHHHHHHHHHcCCcEEEEEe---CC-CEEEEEEeCcccccchHHHHHHHHHHHh
Confidence 458899999999999999999999842 33 2223444432211444445677777766
No 189
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=90.09 E-value=2.1 Score=35.47 Aligned_cols=40 Identities=15% Similarity=0.159 Sum_probs=36.7
Q ss_pred EEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEeCCeEE
Q 022480 104 IVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQ 143 (296)
Q Consensus 104 ~V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~~~~~~ 143 (296)
++-|..+|+||-|.+|+++|.++++|+--...|++.....
T Consensus 71 VlaVEmeD~PG~l~~I~~vl~d~diNldYiYAFv~ek~KA 110 (142)
T COG4747 71 VLAVEMEDVPGGLSRIAEVLGDADINLDYIYAFVTEKQKA 110 (142)
T ss_pred EEEEEecCCCCcHHHHHHHHhhcCcCceeeeeeeecCceE
Confidence 6788899999999999999999999999999999987654
No 190
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=89.63 E-value=0.96 Score=46.08 Aligned_cols=61 Identities=16% Similarity=0.342 Sum_probs=43.2
Q ss_pred CcEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEec--CCeeeeEEEEEeCCCCCChHHHHHHH
Q 022480 216 KRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTE--GLVAKDKFHVSYGGAALNSSLSQVLV 279 (296)
Q Consensus 216 ~~TvleV~t~DRPGLL~dIt~~La~~gv~I~~AkI~T~--G~ra~D~F~V~~~g~~L~~~~~~~L~ 279 (296)
+.+.+-+.-.|+||.+..|+.+|.++||||..+++.-. |+.+.=++.+ .++++++..++|+
T Consensus 451 ~~~~li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~r~~~g~~al~~i~~---D~~v~~~~l~~i~ 513 (526)
T PRK13581 451 EGHMLIIRNRDRPGVIGKVGTLLGEAGINIAGMQLGRREAGGEALMVLSV---DDPVPEEVLEELR 513 (526)
T ss_pred CceEEEEEeCCcCChhHHHHHHHhhcCCCchhcEeccCCCCCeEEEEEEC---CCCCCHHHHHHHh
Confidence 44556667799999999999999999999999998754 3444433333 3355555445543
No 191
>PRK06382 threonine dehydratase; Provisional
Probab=89.60 E-value=2.5 Score=41.55 Aligned_cols=37 Identities=22% Similarity=0.311 Sum_probs=32.9
Q ss_pred CCeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEE
Q 022480 100 SDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVN 136 (296)
Q Consensus 100 ~~~t~V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~ 136 (296)
...+.+.|..+|+||-|.+++.+|.++|+||.+-...
T Consensus 328 ~~~~rl~v~v~D~pG~L~~l~~ii~~~~~nI~~v~~~ 364 (406)
T PRK06382 328 GQLVRIECNIPDRPGNLYRIANAIASNGGNIYHAEVD 364 (406)
T ss_pred CCEEEEEEEcCCCCCHHHHHHHHHhcCCCcEEEEEEe
Confidence 3456899999999999999999999999999987664
No 192
>PRK06545 prephenate dehydrogenase; Validated
Probab=89.57 E-value=1.4 Score=42.53 Aligned_cols=50 Identities=10% Similarity=0.088 Sum_probs=41.8
Q ss_pred CCeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEeCCeEEEEEEEe
Q 022480 100 SDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFIT 149 (296)
Q Consensus 100 ~~~t~V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~~~~~~d~F~V~ 149 (296)
..++.|.|.-+||||-++.++..|...|+||.+-+|....+...-++.+.
T Consensus 288 ~~~~~~~v~v~d~pg~~~~~~~~~~~~~i~i~~~~i~~~~~~~~g~~~~~ 337 (359)
T PRK06545 288 PSFYDLYVDVPDEPGVIARVTAILGEEGISIENLRILEAREDIHGVLQIS 337 (359)
T ss_pred CcceEEEEeCCCCCCHHHHHHHHHHHcCCCeecceeeeccCCcCceEEEE
Confidence 56789999999999999999999999999999999987766443334443
No 193
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy
Probab=89.51 E-value=2.8 Score=31.02 Aligned_cols=46 Identities=15% Similarity=0.392 Sum_probs=34.8
Q ss_pred EEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEeCCe-EEEEEEEee
Q 022480 105 VQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSV-KQTKFFITR 150 (296)
Q Consensus 105 V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~~~~-~~d~F~V~~ 150 (296)
+.+..+|+||-|+++.+.|+.+|+|+.+-.-.-..+. +.-.|+|.-
T Consensus 3 l~f~l~~~pG~L~~vL~~f~~~~iNlt~IeSRP~~~~~~~y~Ffvd~ 49 (74)
T cd04904 3 LIFSLKEEVGALARALKLFEEFGVNLTHIESRPSRRNGSEYEFFVDC 49 (74)
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCCcEEEEECCCCCCCCceEEEEEEE
Confidence 4555689999999999999999999987665555442 234577776
No 194
>PRK11898 prephenate dehydratase; Provisional
Probab=89.22 E-value=2.3 Score=39.92 Aligned_cols=67 Identities=15% Similarity=0.166 Sum_probs=46.7
Q ss_pred cEEEEEEeCC-CcchHHHHHHHHHhCCceEEEEEEEecCCe-eeeEEEEEeCCCCCChHHHHHHHHHHHH
Q 022480 217 RSLLYIETAD-RPGLLVEIMKIIADVNVDVESAEIDTEGLV-AKDKFHVSYGGAALNSSLSQVLVNCLRY 284 (296)
Q Consensus 217 ~TvleV~t~D-RPGLL~dIt~~La~~gv~I~~AkI~T~G~r-a~D~F~V~~~g~~L~~~~~~~L~~~L~~ 284 (296)
.|.|-+...+ +||-|+++.+.|+++|||+.+.+..-...+ -.=.|||.-+|+. .++..+++.+.|+.
T Consensus 196 ktslif~l~~~~pGsL~~~L~~F~~~~INLt~IeSRP~~~~~~~y~F~vd~eg~~-~~~~~~~al~~L~~ 264 (283)
T PRK11898 196 KTSLVLTLPNNLPGALYKALSEFAWRGINLTRIESRPTKTGLGTYFFFIDVEGHI-DDVLVAEALKELEA 264 (283)
T ss_pred eEEEEEEeCCCCccHHHHHHHHHHHCCCCeeeEecccCCCCCccEEEEEEEEccC-CCHHHHHHHHHHHH
Confidence 4556566654 699999999999999999999998755444 4457888657754 44333444455554
No 195
>COG0440 IlvH Acetolactate synthase, small (regulatory) subunit [Amino acid transport and metabolism]
Probab=89.10 E-value=1.5 Score=38.13 Aligned_cols=66 Identities=20% Similarity=0.271 Sum_probs=48.7
Q ss_pred EEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEeCCeEEEEEEEeecCCCCCCCChHHHHHHHHHHHHhh
Q 022480 103 TIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNL 174 (296)
Q Consensus 103 t~V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~~~~~~d~F~V~~~~~g~~l~~~~~l~~L~~~L~~~L 174 (296)
.++.+.-.|.||.|.++++.|+..|+||.+-.+..+...-+-...+.- .| ++..+++|.+.|....
T Consensus 5 rilsvlv~ne~GvLsRv~glfsrRG~NIeSltv~~tE~~~~SRiTivv--~g----~~~~~EQi~kQL~kLi 70 (163)
T COG0440 5 RILSLLVENEPGVLSRVTGLFSRRGYNIESLTVGPTETPGLSRITIVV--SG----DEQVLEQIIKQLNKLI 70 (163)
T ss_pred EEEEEEEECCCCeeehhhHHHHhcCcccceEEEEecCCCCceEEEEEE--cC----CcchHHHHHHHHHhhc
Confidence 467888899999999999999999999999999777654443333333 23 2356677777777644
No 196
>cd04929 ACT_TPH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxytryptamine (serotonin) and the first reaction in the synthesis of melatonin. Very little is known about the role of the ACT domain in TPH, which appears to be regulated by phosphorylation but not by its substrate or cofactor. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=88.95 E-value=3.7 Score=30.69 Aligned_cols=49 Identities=16% Similarity=0.340 Sum_probs=36.5
Q ss_pred EEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEeCCe-EEEEEEEeecCCCC
Q 022480 105 VQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSV-KQTKFFITRLDTGR 155 (296)
Q Consensus 105 V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~~~~-~~d~F~V~~~~~g~ 155 (296)
+.+..+|+||-|+++-..|+.+|+|+..-.-....+. +.-.|+|.- +|.
T Consensus 3 l~~~l~~~~g~L~~iL~~f~~~~inl~~IeSRP~~~~~~~y~F~id~--e~~ 52 (74)
T cd04929 3 VIFSLKNEVGGLAKALKLFQELGINVVHIESRKSKRRSSEFEIFVDC--ECD 52 (74)
T ss_pred EEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEE--EcC
Confidence 4455689999999999999999999987666555442 334577776 454
No 197
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=88.67 E-value=0.93 Score=44.76 Aligned_cols=60 Identities=15% Similarity=0.293 Sum_probs=45.1
Q ss_pred CCCcEEEEeecCCCCeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEeCCeEEEEEEE
Q 022480 87 IPMPHVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFI 148 (296)
Q Consensus 87 ~~~p~V~i~~~~~~~~t~V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~~~~~~d~F~V 148 (296)
++.|.|.... ......|.+.-.|+||.+++++.+|+++|+||..-++...++....+|-+
T Consensus 325 vn~~~~~~~~--~~~~~rlii~h~d~pG~ia~it~~l~~~~iNI~~m~~~~~~~~A~~iie~ 384 (409)
T PRK11790 325 VNFPEVSLPE--HPGGHRLLHIHENRPGVLAAINQIFAEQGINIAAQYLQTDGEIGYVVIDV 384 (409)
T ss_pred eeccccccCC--CCCCceEEEEeCCCCCHHHHHHHHHHhcCCCHHHheeccCCCEEEEEEEe
Confidence 3445444322 33556888899999999999999999999999999998888666544433
No 198
>COG0527 LysC Aspartokinases [Amino acid transport and metabolism]
Probab=88.62 E-value=29 Score=34.90 Aligned_cols=119 Identities=18% Similarity=0.240 Sum_probs=70.5
Q ss_pred CCeEEEEEEeC---CCccHHHHHHHHHHHCCceEEEEEEEEeCCeEEEEEEEeecCCCCCCCChHHHHHHHHHHHHhhcc
Q 022480 100 SDATIVQLSFG---DRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLK 176 (296)
Q Consensus 100 ~~~t~V~V~~~---DrpGLLa~i~~vL~~~glnI~~A~I~T~~~~~~d~F~V~~~~~g~~l~~~~~l~~L~~~L~~~L~~ 176 (296)
.+.+.|+|.+. ..+|.++++...|.++|+||..-........ -.|.+... ...+....|.+....
T Consensus 305 ~~~~~i~v~~~~~~~~~g~~a~vf~~l~~~~i~v~~I~q~~~~~~--i~~~v~~~----------~~~~a~~~l~~~~~~ 372 (447)
T COG0527 305 DNVALITVSGPGMNGMVGFAARVFGILAEAGINVDLITQSISEVS--ISFTVPES----------DAPRALRALLEEKLE 372 (447)
T ss_pred CCeEEEEEEccCccccccHHHHHHHHHHHcCCcEEEEEeccCCCe--EEEEEchh----------hHHHHHHHHHHHHhh
Confidence 45566776643 3459999999999999999975433333333 23666442 112223333332211
Q ss_pred cCCCchhHhhhccccCccCCCccccccccceeeeccCCCCcEEEEEEe---CCCcchHHHHHHHHHhCCceEEEEEEEec
Q 022480 177 YHPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIET---ADRPGLLVEIMKIIADVNVDVESAEIDTE 253 (296)
Q Consensus 177 ~~~~~~~~La~~~~~~~~~~~r~~~~~~~~~V~v~~~~~~~TvleV~t---~DRPGLL~dIt~~La~~gv~I~~AkI~T~ 253 (296)
. + . ++.+.. +...|.+.+ ...||..+++.++|++.||||.+..
T Consensus 373 --~-----~-----------------~---~v~~~~---~~a~vsiVG~gm~~~~gvaa~~f~aL~~~~ini~~is---- 418 (447)
T COG0527 373 --L-----L-----------------A---EVEVEE---GLALVSIVGAGMRSNPGVAARIFQALAEENINIIMIS---- 418 (447)
T ss_pred --h-----c-----------------c---eEEeeC---CeeEEEEEccccccCcCHHHHHHHHHHhCCCcEEEEE----
Confidence 0 0 0 112222 235555554 4789999999999999999999887
Q ss_pred CCeeeeEEEEE
Q 022480 254 GLVAKDKFHVS 264 (296)
Q Consensus 254 G~ra~D~F~V~ 264 (296)
-....=.|.|.
T Consensus 419 sSe~~Is~vV~ 429 (447)
T COG0527 419 SSEISISFVVD 429 (447)
T ss_pred cCCceEEEEEc
Confidence 12233346663
No 199
>PLN02317 arogenate dehydratase
Probab=88.51 E-value=3.1 Score=40.87 Aligned_cols=67 Identities=13% Similarity=0.223 Sum_probs=47.5
Q ss_pred cEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCe---------------eeeEEEEEeCCCCCChHHHHHHHHH
Q 022480 217 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLV---------------AKDKFHVSYGGAALNSSLSQVLVNC 281 (296)
Q Consensus 217 ~TvleV~t~DRPGLL~dIt~~La~~gv~I~~AkI~T~G~r---------------a~D~F~V~~~g~~L~~~~~~~L~~~ 281 (296)
.|.|-+.-.|+||-|+++..+|+.+|||+.+.+-.-...+ -.=.|||.-+|+. .++..++..+.
T Consensus 283 KTSivfsl~~~pG~L~k~L~~Fa~~~INLtkIESRP~~~~~~~~~~~~~~~~~~~~eY~FyVD~eg~~-~d~~~~~aL~~ 361 (382)
T PLN02317 283 KTSIVFSLEEGPGVLFKALAVFALRDINLTKIESRPQRKRPLRVVDDSNSGTAKYFDYLFYVDFEASM-ADPRAQNALAH 361 (382)
T ss_pred cEEEEEEcCCCCchHHHHHHHHHHCCCCEEEEEeeecCCCCccccccccccccccccEEEEEEEEcCc-CCHHHHHHHHH
Confidence 4777777789999999999999999999999988655443 2337888656644 33333333445
Q ss_pred HHH
Q 022480 282 LRY 284 (296)
Q Consensus 282 L~~ 284 (296)
|+.
T Consensus 362 L~~ 364 (382)
T PLN02317 362 LQE 364 (382)
T ss_pred HHH
Confidence 544
No 200
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=88.46 E-value=1 Score=45.91 Aligned_cols=61 Identities=13% Similarity=0.284 Sum_probs=43.3
Q ss_pred CcEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEec--CCeeeeEEEEEeCCCCCChHHHHHHH
Q 022480 216 KRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTE--GLVAKDKFHVSYGGAALNSSLSQVLV 279 (296)
Q Consensus 216 ~~TvleV~t~DRPGLL~dIt~~La~~gv~I~~AkI~T~--G~ra~D~F~V~~~g~~L~~~~~~~L~ 279 (296)
+.+.+-+.-.||||.+..|+++|.+++|||..+++.-. |+.+.=++.+ .++++++.+++|+
T Consensus 450 ~~~~li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~R~~~g~~al~~i~~---D~~v~~~~l~~i~ 512 (525)
T TIGR01327 450 EGIMLIILHLDKPGVIGKVGTLLGTAGINIASMQLGRKEKGGEALMLLSL---DQPVPDEVLEEIK 512 (525)
T ss_pred CccEEEEEecCcCCcchHHHhHHhhcCCChHHcEeecCCCCCeEEEEEEc---CCCCCHHHHHHHh
Confidence 34555667799999999999999999999999998754 4444433333 3366655555554
No 201
>cd04932 ACT_AKiii-LysC-EC_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=88.41 E-value=5.4 Score=29.75 Aligned_cols=56 Identities=20% Similarity=0.281 Sum_probs=35.8
Q ss_pred eCCCcchHHHHHHHHHhCCceEEEEEEEecCCeeeeEEEEEeCCCCCChH-HHHHHHHHHHH
Q 022480 224 TADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGGAALNSS-LSQVLVNCLRY 284 (296)
Q Consensus 224 t~DRPGLL~dIt~~La~~gv~I~~AkI~T~G~ra~D~F~V~~~g~~L~~~-~~~~L~~~L~~ 284 (296)
..++||++++|..+|+++|++|...- + ++ ..=.|-+.. ..+..+. ..++|.+.|+.
T Consensus 11 ~~~~~g~~~~IF~~La~~~I~VDmI~--~-s~-~~iSftv~~-~d~~~~~~~~~~l~~~l~~ 67 (75)
T cd04932 11 MLHAQGFLAKVFGILAKHNISVDLIT--T-SE-ISVALTLDN-TGSTSDQLLTQALLKELSQ 67 (75)
T ss_pred CCCCcCHHHHHHHHHHHcCCcEEEEe--e-cC-CEEEEEEec-cccchhHHHHHHHHHHHHh
Confidence 46899999999999999999999984 2 33 222344433 2222222 22356666555
No 202
>TIGR01270 Trp_5_monoox tryptophan 5-monooxygenase, tetrameric. This model describes tryptophan 5-monooxygenase, a member of the family of tetrameric, biopterin-dependent aromatic amino acid hydroxylases found in metazoans. It is closely related to tetrameric phenylalanine-4-hydroxylase and tyrosine 3-monooxygenase, and more distantly related to the monomeric phenylalanine-4-hydroxylase found in some Gram-negative bacteria.
Probab=88.09 E-value=2.4 Score=42.55 Aligned_cols=54 Identities=13% Similarity=0.078 Sum_probs=43.1
Q ss_pred CcEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCeeee--EEEEEeCCCC
Q 022480 216 KRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKD--KFHVSYGGAA 269 (296)
Q Consensus 216 ~~TvleV~t~DRPGLL~dIt~~La~~gv~I~~AkI~T~G~ra~D--~F~V~~~g~~ 269 (296)
..+.|-+...|+||-|+++.+.|+.+|||+.+.+.........+ .|||.-+|+.
T Consensus 30 ~ktSLIFsL~d~pGaL~~vL~vFa~~gINLThIESRPsk~~~~e~Y~FfVD~Eg~~ 85 (464)
T TIGR01270 30 QRLSIIFSLSNVVGDLSKAIAIFQDRHINILHLESRDSKDGTSKTMDVLVDVELFH 85 (464)
T ss_pred ceEEEEEECCCCchHHHHHHHHHHHCCCCEEEEECCcCCCCCCccEEEEEEEEcCH
Confidence 45777777799999999999999999999999988765544444 7888656654
No 203
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form. A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.
Probab=87.93 E-value=3.9 Score=39.58 Aligned_cols=34 Identities=18% Similarity=0.294 Sum_probs=30.9
Q ss_pred EEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEE
Q 022480 103 TIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVN 136 (296)
Q Consensus 103 t~V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~ 136 (296)
..+.|..+|+||.|++++..++++|.||.+-...
T Consensus 306 ~~l~v~l~D~pG~L~~v~~~i~~~~~NI~~i~~~ 339 (380)
T TIGR01127 306 VRIETVLPDRPGALYHLLESIAEARANIVKIDHD 339 (380)
T ss_pred EEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEee
Confidence 3889999999999999999999999999987554
No 204
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form. A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.
Probab=87.76 E-value=3.9 Score=39.58 Aligned_cols=64 Identities=20% Similarity=0.278 Sum_probs=44.2
Q ss_pred cEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEe---c--CCeeeeEEEEEeCCCCCChHHHHHHHHHHHH
Q 022480 217 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDT---E--GLVAKDKFHVSYGGAALNSSLSQVLVNCLRY 284 (296)
Q Consensus 217 ~TvleV~t~DRPGLL~dIt~~La~~gv~I~~AkI~T---~--G~ra~D~F~V~~~g~~L~~~~~~~L~~~L~~ 284 (296)
...+.|.-+||||-|.+|++.++++|.||....-.. . -+.+.=.+.+...+ ....++|.+.|++
T Consensus 305 ~~~l~v~l~D~pG~L~~v~~~i~~~~~NI~~i~~~r~~~~~~~~~~~v~v~vet~~----~~~~~~i~~~L~~ 373 (380)
T TIGR01127 305 KVRIETVLPDRPGALYHLLESIAEARANIVKIDHDRLSKEIPPGFAMVEITLETRG----KEHLDEILKILRD 373 (380)
T ss_pred EEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCceEEEEEEEEeCC----HHHHHHHHHHHHH
Confidence 458999999999999999999999999998875441 1 13333334443232 2345667777654
No 205
>cd04922 ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the second of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathwa
Probab=87.75 E-value=5.9 Score=27.62 Aligned_cols=34 Identities=21% Similarity=0.414 Sum_probs=27.7
Q ss_pred EEEEEe---CCCcchHHHHHHHHHhCCceEEEEEEEe
Q 022480 219 LLYIET---ADRPGLLVEIMKIIADVNVDVESAEIDT 252 (296)
Q Consensus 219 vleV~t---~DRPGLL~dIt~~La~~gv~I~~AkI~T 252 (296)
.|.+.+ .+.||++++|.++|++.|++|....-.+
T Consensus 3 ~isvvg~~~~~~~~~~~~i~~~l~~~~I~v~~i~~~~ 39 (66)
T cd04922 3 ILALVGDGMAGTPGVAATFFSALAKANVNIRAIAQGS 39 (66)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecC
Confidence 455555 4889999999999999999998885443
No 206
>TIGR01268 Phe4hydrox_tetr phenylalanine-4-hydroxylase, tetrameric form. The member of this family from Drosophila has been described as having both phenylalanine-4-hydroxylase and tryptophan 5-monoxygenase activity (PubMed:1371286). However, a Drosophila member of the tryptophan 5-monoxygenase clade has subsequently been discovered.
Probab=87.35 E-value=3.7 Score=41.00 Aligned_cols=67 Identities=18% Similarity=0.289 Sum_probs=48.7
Q ss_pred cEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecC-CeeeeEEEEEeCCCCCChHHHHHHHHHHHHH
Q 022480 217 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEG-LVAKDKFHVSYGGAALNSSLSQVLVNCLRYY 285 (296)
Q Consensus 217 ~TvleV~t~DRPGLL~dIt~~La~~gv~I~~AkI~T~G-~ra~D~F~V~~~g~~L~~~~~~~L~~~L~~~ 285 (296)
.+.|-+...|+||-|++|.++|+++|||+.+.+..... ..-+=.|||.-+|+. . +..+++.+.|+..
T Consensus 16 KTSLiFsL~d~pGaL~~vL~vFa~~gINLthIESRPsk~~~~eY~FFVD~eg~~-~-~~v~~aL~~Lk~~ 83 (436)
T TIGR01268 16 KTSLIFSLKEEAGALAETLKLFQAHDVNLTHIESRPSKTHPGEYEFFVEFDEAS-D-RKLEGVIEHLRQK 83 (436)
T ss_pred eEEEEEEcCCCCcHHHHHHHHHHHCCCCeeEEecccCCCCCccEEEEEEEecCc-c-HHHHHHHHHHHHh
Confidence 57777778999999999999999999999999886543 334457888756765 2 3334444555543
No 207
>cd04898 ACT_ACR-like_4 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=86.60 E-value=1.7 Score=33.00 Aligned_cols=34 Identities=29% Similarity=0.332 Sum_probs=31.6
Q ss_pred EEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEe
Q 022480 105 VQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTE 138 (296)
Q Consensus 105 V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~ 138 (296)
|+++|+-||-.|++++-+|..+|.-|.+|.|...
T Consensus 3 VElsGkGRPrVfyDvTlALK~L~i~IFsaeIgR~ 36 (77)
T cd04898 3 VELSGKGRPRVFYDITLALKKLGICIFSAEIGRH 36 (77)
T ss_pred ccccCCCCcceeeehHHHHHHhccEEEehhhhhh
Confidence 6789999999999999999999999999999654
No 208
>COG2150 Predicted regulator of amino acid metabolism, contains ACT domain [General function prediction only]
Probab=85.77 E-value=3.2 Score=35.96 Aligned_cols=60 Identities=15% Similarity=0.280 Sum_probs=38.6
Q ss_pred cEEEEEEe--CCCcchHHHHHHHHHhCCceEEEEEEEecCCeeeeE-EEEEeCCCCCChHHHHHH
Q 022480 217 RSLLYIET--ADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDK-FHVSYGGAALNSSLSQVL 278 (296)
Q Consensus 217 ~TvleV~t--~DRPGLL~dIt~~La~~gv~I~~AkI~T~G~ra~D~-F~V~~~g~~L~~~~~~~L 278 (296)
.-++++.. ++.||+|+.+++.++++||+|..+-.. ..+-..+. .+|- ..++|......+|
T Consensus 93 ~gViei~~~~~~~pgi~A~V~~~iak~gi~Irqi~~~-dpe~~~e~~l~IV-te~~iP~~li~el 155 (167)
T COG2150 93 LGVIEIYPEDARYPGILAGVASLIAKRGISIRQIISE-DPELQEEPKLTIV-TERPIPGDLIDEL 155 (167)
T ss_pred CeEEEEEeccCCCccHHHHHHHHHHHcCceEEEEecC-CcccCCCceEEEE-EeccCCHHHHHHH
Confidence 44566655 678999999999999999999988653 23233332 2232 3446655544444
No 209
>COG0440 IlvH Acetolactate synthase, small (regulatory) subunit [Amino acid transport and metabolism]
Probab=85.57 E-value=3.1 Score=36.16 Aligned_cols=65 Identities=17% Similarity=0.307 Sum_probs=44.4
Q ss_pred EEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEE-ecCCeeee-EEEEEeCCCCCChHHHHHHHHHHHHHcC
Q 022480 218 SLLYIETADRPGLLVEIMKIIADVNVDVESAEID-TEGLVAKD-KFHVSYGGAALNSSLSQVLVNCLRYYLR 287 (296)
Q Consensus 218 TvleV~t~DRPGLL~dIt~~La~~gv~I~~AkI~-T~G~ra~D-~F~V~~~g~~L~~~~~~~L~~~L~~~l~ 287 (296)
-++.+--.|.||.|.+++-.|++.|+||.+..+. |+-....- .+.+ .|. +...+++.+.|.+.++
T Consensus 5 rilsvlv~ne~GvLsRv~glfsrRG~NIeSltv~~tE~~~~SRiTivv--~g~---~~~~EQi~kQL~kLid 71 (163)
T COG0440 5 RILSLLVENEPGVLSRVTGLFSRRGYNIESLTVGPTETPGLSRITIVV--SGD---EQVLEQIIKQLNKLID 71 (163)
T ss_pred EEEEEEEECCCCeeehhhHHHHhcCcccceEEEEecCCCCceEEEEEE--cCC---cchHHHHHHHHHhhcc
Confidence 4567778899999999999999999999999985 44333222 2222 331 2235666666666555
No 210
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=84.98 E-value=1.1 Score=45.46 Aligned_cols=36 Identities=31% Similarity=0.449 Sum_probs=33.6
Q ss_pred EEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecC
Q 022480 219 LLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEG 254 (296)
Q Consensus 219 vleV~t~DRPGLL~dIt~~La~~gv~I~~AkI~T~G 254 (296)
.++|.|.||.|+..+|...|..+++|+...+|...|
T Consensus 2 rl~~~~~dr~g~~~~~l~~~~~~~~~~~~~e~~~~~ 37 (520)
T PRK10820 2 RLEVFCEDRLGLTRELLDLLVLRSIDLRGIEIDPIG 37 (520)
T ss_pred eEEEEeeccccHHHHHHHHHHhcCCCccEEEEcCCC
Confidence 479999999999999999999999999999998764
No 211
>PRK08198 threonine dehydratase; Provisional
Probab=84.83 E-value=7.4 Score=38.04 Aligned_cols=35 Identities=31% Similarity=0.532 Sum_probs=32.4
Q ss_pred cEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEE
Q 022480 217 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEID 251 (296)
Q Consensus 217 ~TvleV~t~DRPGLL~dIt~~La~~gv~I~~AkI~ 251 (296)
...+.|.-+|+||-|.++.+.+.++|.||......
T Consensus 327 ~~~l~v~l~D~PG~L~~ll~~i~~~g~NI~~i~~~ 361 (404)
T PRK08198 327 YLKLRVRLPDRPGQLAKLLSIIAELGANVIDVDHD 361 (404)
T ss_pred EEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEE
Confidence 57999999999999999999999999999988765
No 212
>KOG2663 consensus Acetolactate synthase, small subunit [Amino acid transport and metabolism]
Probab=84.78 E-value=2 Score=39.97 Aligned_cols=43 Identities=12% Similarity=0.115 Sum_probs=37.4
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEeCCeEE
Q 022480 101 DATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQ 143 (296)
Q Consensus 101 ~~t~V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~~~~~~ 143 (296)
...++.+..-|.||.+.+|+++|+..|+||.+--|.-+....+
T Consensus 76 krHvinclVqnEpGvlsRisGvlAaRGfNIdSLvVc~tevk~L 118 (309)
T KOG2663|consen 76 KRHVINCLVQNEPGVLSRISGVLAARGFNIDSLVVCLTEVKAL 118 (309)
T ss_pred cceeEEEEecCCchHHHHHHHHHHhccCCchheeeechhhhhh
Confidence 3458899999999999999999999999999988877766554
No 213
>cd04934 ACT_AK-Hom3_1 CT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydro
Probab=84.24 E-value=6 Score=29.37 Aligned_cols=54 Identities=13% Similarity=0.148 Sum_probs=35.9
Q ss_pred CCCcchHHHHHHHHHhCCceEEEEEEEecCCeeeeEEEEEeCCCCCChHHHHHHHHHHHH
Q 022480 225 ADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGGAALNSSLSQVLVNCLRY 284 (296)
Q Consensus 225 ~DRPGLL~dIt~~La~~gv~I~~AkI~T~G~ra~D~F~V~~~g~~L~~~~~~~L~~~L~~ 284 (296)
.-.||++++|.++|+++|++|...-. ++ ..=.|-+.. ..+.++..++|.+.|+.
T Consensus 12 ~~~~g~~~~If~~la~~~I~vd~I~~---s~-~~isftv~~--~~~~~~~l~~l~~el~~ 65 (73)
T cd04934 12 SLSHGFLARIFAILDKYRLSVDLIST---SE-VHVSMALHM--ENAEDTNLDAAVKDLQK 65 (73)
T ss_pred ccccCHHHHHHHHHHHcCCcEEEEEe---CC-CEEEEEEeh--hhcChHHHHHHHHHHHH
Confidence 45699999999999999999999843 33 222344433 23333345677777765
No 214
>COG0077 PheA Prephenate dehydratase [Amino acid transport and metabolism]
Probab=83.96 E-value=6.2 Score=37.18 Aligned_cols=53 Identities=21% Similarity=0.312 Sum_probs=41.7
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEeCCeE-EEEEEEeecCCCC
Q 022480 101 DATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVK-QTKFFITRLDTGR 155 (296)
Q Consensus 101 ~~t~V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~~~~~-~d~F~V~~~~~g~ 155 (296)
..|.+.+..+|+||.|+++-++|+.+|+|...-.-.-.+.+. .-.|+|.- +|+
T Consensus 193 ~kTsl~f~~~n~PGaL~~~L~~Fa~~gINlTkIESRP~k~~~~~Y~F~iD~--eg~ 246 (279)
T COG0077 193 EKTSLIFSVPNKPGALYKALGVFAKRGINLTKIESRPLKTGLGEYLFFIDI--EGH 246 (279)
T ss_pred ceEEEEEEcCCCCchHHHHHHHHHHcCcceeeEeecccCCCCeeEEEEEEE--ecC
Confidence 367888888899999999999999999999876665555543 35577776 465
No 215
>PRK06349 homoserine dehydrogenase; Provisional
Probab=83.76 E-value=6.1 Score=39.18 Aligned_cols=51 Identities=14% Similarity=0.213 Sum_probs=40.6
Q ss_pred CCeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEeCCeEEEEEEEee
Q 022480 100 SDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITR 150 (296)
Q Consensus 100 ~~~t~V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~~~~~~d~F~V~~ 150 (296)
...+-|.+...|+||.|++++++|.++|+||.+-......++....+++++
T Consensus 346 ~~~yylRl~v~d~pGvLa~I~~~f~~~~vsI~si~q~~~~~~~~~ivivT~ 396 (426)
T PRK06349 346 ESKYYLRLLVADKPGVLAKIAAIFAENGISIESILQKGAGGEGAEIVIVTH 396 (426)
T ss_pred ceeEEEEEEecCCcchHHHHHHHHhhcCccEEEEEeccCCCCceeEEEEEE
Confidence 345688899999999999999999999999998766554444455666776
No 216
>cd04919 ACT_AK-Hom3_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=83.43 E-value=13 Score=25.99 Aligned_cols=34 Identities=15% Similarity=0.277 Sum_probs=27.9
Q ss_pred EEEEEeC---CCcchHHHHHHHHHhCCceEEEEEEEe
Q 022480 219 LLYIETA---DRPGLLVEIMKIIADVNVDVESAEIDT 252 (296)
Q Consensus 219 vleV~t~---DRPGLL~dIt~~La~~gv~I~~AkI~T 252 (296)
.|.+.+. ++||++++|.++|++.|++|....-.+
T Consensus 3 ~isvvg~~~~~~~~~~~~if~~L~~~~I~v~~i~q~~ 39 (66)
T cd04919 3 ILSLVGKHMKNMIGIAGRMFTTLADHRINIEMISQGA 39 (66)
T ss_pred EEEEECCCCCCCcCHHHHHHHHHHHCCCCEEEEEecC
Confidence 4555554 789999999999999999998886544
No 217
>PRK11899 prephenate dehydratase; Provisional
Probab=83.37 E-value=8.5 Score=36.17 Aligned_cols=52 Identities=17% Similarity=0.265 Sum_probs=40.8
Q ss_pred eEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEeCCe-EEEEEEEeecCCCC
Q 022480 102 ATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSV-KQTKFFITRLDTGR 155 (296)
Q Consensus 102 ~t~V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~~~~-~~d~F~V~~~~~g~ 155 (296)
-|.+.+..+|+||.|+++-++|+.+|+|+.+-.-.-.+++ +.-.|+|.- +|.
T Consensus 194 ktsl~~~~~~~pGaL~~vL~~Fa~~gINLtkIeSRP~~~~~~~Y~F~id~--eg~ 246 (279)
T PRK11899 194 VTTFVFRVRNIPAALYKALGGFATNGVNMTKLESYMVGGSFTATQFYADI--EGH 246 (279)
T ss_pred eEEEEEEeCCCCChHHHHHHHHHHcCCCeeeEEeeecCCCCceEEEEEEE--ECC
Confidence 4667777799999999999999999999987766666543 345688876 465
No 218
>PRK09084 aspartate kinase III; Validated
Probab=82.85 E-value=37 Score=33.95 Aligned_cols=120 Identities=13% Similarity=0.163 Sum_probs=68.2
Q ss_pred CCeEEEEEEeC---CCccHHHHHHHHHHHCCceEEEEEEEEeCCeEEEEEEEeecCCCCCCCChHHHHHHHHHHHHhhcc
Q 022480 100 SDATIVQLSFG---DRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLK 176 (296)
Q Consensus 100 ~~~t~V~V~~~---DrpGLLa~i~~vL~~~glnI~~A~I~T~~~~~~d~F~V~~~~~g~~l~~~~~l~~L~~~L~~~L~~ 176 (296)
.+...|+|.+. +.+|.++++...|.++|+||.--.. . + .--.|.|... . .. ......+.+.+.+.+..
T Consensus 304 ~~i~lItv~~~~~~~~~g~~a~if~~l~~~~I~Vd~I~s--s-e-~sIs~~i~~~--~--~~-~~~~~~~~~~l~~el~~ 374 (448)
T PRK09084 304 RNQTLLTLHSLNMLHARGFLAEVFGILARHKISVDLITT--S-E-VSVSLTLDTT--G--ST-STGDTLLTQALLTELSQ 374 (448)
T ss_pred CCEEEEEEecCCCCccccHHHHHHHHHHHcCCeEEEEec--c-C-cEEEEEEech--h--hh-hhhhHHHHHHHHHHHhc
Confidence 35567788654 6899999999999999999987642 2 2 1123556542 1 00 01112222222221210
Q ss_pred cCCCchhHhhhccccCccCCCccccccccceeeeccCCCCcEEEEEEeC---CCcchHHHHHHHHHhCCceEEEEEEEec
Q 022480 177 YHPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIETA---DRPGLLVEIMKIIADVNVDVESAEIDTE 253 (296)
Q Consensus 177 ~~~~~~~~La~~~~~~~~~~~r~~~~~~~~~V~v~~~~~~~TvleV~t~---DRPGLL~dIt~~La~~gv~I~~AkI~T~ 253 (296)
. ..|.+.+ +...|.|.+. ++||+++++..+|.+. +|.. -..
T Consensus 375 --~--------------------------~~i~~~~---~va~IsvvG~gm~~~~gv~arif~aL~~~--nI~~---I~q 418 (448)
T PRK09084 375 --L--------------------------CRVEVEE---GLALVALIGNNLSKACGVAKRVFGVLEPF--NIRM---ICY 418 (448)
T ss_pred --C--------------------------CeEEEEC---CeEEEEEECCCcccCcChHHHHHHHHHhC--CeEE---EEE
Confidence 0 0122222 4577888876 7999999999999874 4433 223
Q ss_pred CCeeeeE-EEEE
Q 022480 254 GLVAKDK-FHVS 264 (296)
Q Consensus 254 G~ra~D~-F~V~ 264 (296)
|.....+ |.|.
T Consensus 419 gsSe~sIS~vV~ 430 (448)
T PRK09084 419 GASSHNLCFLVP 430 (448)
T ss_pred cCCCCcEEEEEc
Confidence 4443443 5553
No 219
>cd04937 ACT_AKi-DapG-BS_2 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive AK isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The BS AKI is tetrameric consisting of two alpha and two beta subunits; th
Probab=82.43 E-value=15 Score=26.05 Aligned_cols=28 Identities=14% Similarity=0.359 Sum_probs=24.2
Q ss_pred EEEEEeC---CCcchHHHHHHHHHhCCceEE
Q 022480 219 LLYIETA---DRPGLLVEIMKIIADVNVDVE 246 (296)
Q Consensus 219 vleV~t~---DRPGLL~dIt~~La~~gv~I~ 246 (296)
.|.|.+. +.||+++++.++|.+.|++|.
T Consensus 3 ~isvvG~~~~~~~gi~~~if~aL~~~~I~v~ 33 (64)
T cd04937 3 KVTIIGSRIRGVPGVMAKIVGALSKEGIEIL 33 (64)
T ss_pred EEEEECCCccCCcCHHHHHHHHHHHCCCCEE
Confidence 4556664 899999999999999999995
No 220
>cd04868 ACT_AK-like ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes each of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). Typically, AK consists of two ACT domains in a tandem repeat, but the second ACT domain is inserted within the first, resulting in, what is normally the terminal beta strand of ACT2, formed from a region N-terminal of ACT1. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Aspartokinase is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind am
Probab=82.40 E-value=2.8 Score=27.85 Aligned_cols=33 Identities=18% Similarity=0.367 Sum_probs=26.0
Q ss_pred EEEEEeC---CCcchHHHHHHHHHhCCceEEEEEEE
Q 022480 219 LLYIETA---DRPGLLVEIMKIIADVNVDVESAEID 251 (296)
Q Consensus 219 vleV~t~---DRPGLL~dIt~~La~~gv~I~~AkI~ 251 (296)
.|+|.+. +.+|.++++.++|+++|++|......
T Consensus 2 ~i~v~g~~~~~~~~~~~~i~~~l~~~~i~i~~i~~~ 37 (60)
T cd04868 2 KVSIVGVGMRGTPGVAAKIFSALAEAGINVDMISQS 37 (60)
T ss_pred EEEEECCCCCCCCCHHHHHHHHHHHCCCcEEEEEcC
Confidence 3445544 48999999999999999999877543
No 221
>cd04930 ACT_TH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines (dopamine, noradrenaline and adrenaline), functioning as hormones and neurotransmitters. The enzyme is not regulated by its amino acid substrate, but instead by phosphorylation at several serine residues located N-terminal of the ACT domain, and by feedback inhibition by catecholamines at the active site. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=82.38 E-value=10 Score=30.88 Aligned_cols=49 Identities=4% Similarity=0.114 Sum_probs=37.0
Q ss_pred eEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEeCCe-EEEEEEEee
Q 022480 102 ATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSV-KQTKFFITR 150 (296)
Q Consensus 102 ~t~V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~~~~-~~d~F~V~~ 150 (296)
.+.+.+..+|+||-|+++-..|+.+|+|+.+-.-....+. +.-.|+|.-
T Consensus 41 ktSlifsl~~~pGsL~~iL~~Fa~~gINLt~IESRP~~~~~~eY~FfIdi 90 (115)
T cd04930 41 KATLLFSLKEGFSSLSRILKVFETFEAKIHHLESRPSRKEGGDLEVLVRC 90 (115)
T ss_pred cEEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEECCcCCCCCceEEEEEEE
Confidence 4666666799999999999999999999987666555432 223477765
No 222
>COG3978 Acetolactate synthase (isozyme II), small (regulatory) subunit [Function unknown]
Probab=81.75 E-value=11 Score=29.06 Aligned_cols=47 Identities=13% Similarity=0.140 Sum_probs=40.9
Q ss_pred cEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEec--CCeeeeEEEE
Q 022480 217 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTE--GLVAKDKFHV 263 (296)
Q Consensus 217 ~TvleV~t~DRPGLL~dIt~~La~~gv~I~~AkI~T~--G~ra~D~F~V 263 (296)
.+.+++.+.++||.|.+|.++-...|..|.....++. ++++.=.|.|
T Consensus 3 qyqldl~ar~~pe~leRVLrvtrhRGF~vcamnmt~~~da~~~nie~tV 51 (86)
T COG3978 3 QYQLDLSARFNPETLERVLRVTRHRGFRVCAMNMTAAVDAGNANIELTV 51 (86)
T ss_pred eEEEeeeccCChHHHHHHHHHhhhcCeEEEEeecccccccccceEEEEE
Confidence 4789999999999999999999999999999888775 6666666666
No 223
>cd04890 ACT_AK-like_1 ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the first of two ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids, lysine, threonine, methionine, and isoleucine. This CD, includes the first ACT domain of the Escherichia coli (EC) isoenzyme, AKIII (LysC) and the Arabidopsis isoenzyme, asparate kinase 1, both enzymes monofunctional and involved in lysine synthesis, as well as the the first ACT domain of Bacillus subtilis (BS) isoenzyme, AKIII (YclM), and of the Saccharomyces cerevisiae AK (Hom3). Also included are the first ACT domains of the Methylomicrobium alcaliphilum AK, the first enzyme of the ectoine biosynthetic pathway. Members of this CD bel
Probab=81.51 E-value=9.2 Score=26.62 Aligned_cols=38 Identities=16% Similarity=0.219 Sum_probs=28.6
Q ss_pred eCCCcchHHHHHHHHHhCCceEEEEEEEecCCeeeeEEEEEe
Q 022480 224 TADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSY 265 (296)
Q Consensus 224 t~DRPGLL~dIt~~La~~gv~I~~AkI~T~G~ra~D~F~V~~ 265 (296)
..+++|+.++|.++|+++|+++.... | ++ ..=.|++..
T Consensus 10 m~~~~~~~~~if~~l~~~~i~v~~i~--t-~~-~~is~~v~~ 47 (62)
T cd04890 10 MNGEVGFLRKIFEILEKHGISVDLIP--T-SE-NSVTLYLDD 47 (62)
T ss_pred cCcccCHHHHHHHHHHHcCCeEEEEe--c-CC-CEEEEEEeh
Confidence 35789999999999999999999883 3 33 333466643
No 224
>PRK09224 threonine dehydratase; Reviewed
Probab=81.49 E-value=65 Score=32.74 Aligned_cols=128 Identities=13% Similarity=0.196 Sum_probs=75.7
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEeCCeEEEEEEEeecCCCCCCCChHHHHHHHHHHHHhhcccCC-
Q 022480 101 DATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLKYHP- 179 (296)
Q Consensus 101 ~~t~V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~~~~~~d~F~V~~~~~g~~l~~~~~l~~L~~~L~~~L~~~~~- 179 (296)
.-..+.|.-|||||-|.+++.+|. +.||..-+-...+.....+|+...- .+. +...+.|.+.|++. ++..
T Consensus 327 re~~l~v~iPerPGaL~~f~~~l~--~~nItef~yr~~~~~~a~V~vgie~-~~~----~~~~~~i~~~L~~~--gy~~~ 397 (504)
T PRK09224 327 REALLAVTIPEEPGSFLKFCELLG--GRNVTEFNYRYADAKEAHIFVGVQL-SRG----QEERAEIIAQLRAH--GYPVV 397 (504)
T ss_pred CEEEEEEEeCCCCCHHHHHHHHhc--cCcEEEEEEEecCCCeEEEEEEEEe-CCh----hhHHHHHHHHHHHc--CCCeE
Confidence 456789999999999999999998 6888876555444444555654442 121 12256777777651 1110
Q ss_pred Cc-hhHhhhccccCccCCCccccccccceeeeccCCCCcEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEE
Q 022480 180 ES-SEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIETADRPGLLVEIMKIIADVNVDVESAEID 251 (296)
Q Consensus 180 ~~-~~~La~~~~~~~~~~~r~~~~~~~~~V~v~~~~~~~TvleV~t~DRPGLL~dIt~~La~~gv~I~~AkI~ 251 (296)
+. ...+++ ...+++ +-.+ .....+--++.+.=+.|||-|-++..+|. -+-||...+-.
T Consensus 398 ~ls~ne~~k---------~h~r~~-~g~~---~~~~~~e~~~~~~fPerpGal~~Fl~~l~-~~~~It~f~Yr 456 (504)
T PRK09224 398 DLSDDELAK---------LHVRYM-VGGR---PPKPLDERLYRFEFPERPGALLKFLSTLG-THWNISLFHYR 456 (504)
T ss_pred ECCCCHHHH---------HHHHhc-cCCC---CCCCCceEEEEEeCCCCCCHHHHHHHhcC-CCCeeEEEEEc
Confidence 00 011110 000011 1110 00001235778889999999999999777 77888888774
No 225
>cd04933 ACT_AK1-AT_1 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the first of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine. This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. Like the Escherichia coli AKIII (LysC), Arabidopsis AK1 binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. A loop in common is involved in the binding of both Lys and S-adenosylmethionine providing an explanation for the synergistic inhibition by these effectors. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=80.64 E-value=13 Score=28.04 Aligned_cols=38 Identities=13% Similarity=0.255 Sum_probs=28.8
Q ss_pred eCCCcchHHHHHHHHHhCCceEEEEEEEecCCeeeeEEEEEe
Q 022480 224 TADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSY 265 (296)
Q Consensus 224 t~DRPGLL~dIt~~La~~gv~I~~AkI~T~G~ra~D~F~V~~ 265 (296)
..+.||++++|.++|+++|++|...- + ++ ..=.|-+..
T Consensus 11 ~~~~~g~~a~IF~~La~~~InVDmI~--q-s~-~sISftV~~ 48 (78)
T cd04933 11 MLGQYGFLAKVFSIFETLGISVDVVA--T-SE-VSISLTLDP 48 (78)
T ss_pred CCCccCHHHHHHHHHHHcCCcEEEEE--e-cC-CEEEEEEEh
Confidence 46889999999999999999999984 2 33 223455544
No 226
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=80.54 E-value=5.6 Score=40.57 Aligned_cols=40 Identities=15% Similarity=0.267 Sum_probs=33.7
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEeCC
Q 022480 101 DATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGS 140 (296)
Q Consensus 101 ~~t~V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~~~ 140 (296)
....+.+...|+||.+..++.+|.++|+||..-++.....
T Consensus 451 ~~~~li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~r~~~ 490 (526)
T PRK13581 451 EGHMLIIRNRDRPGVIGKVGTLLGEAGINIAGMQLGRREA 490 (526)
T ss_pred CceEEEEEeCCcCChhHHHHHHHhhcCCCchhcEeccCCC
Confidence 4445666779999999999999999999999999887543
No 227
>cd04924 ACT_AK-Arch_2 ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). Included in this CD is the second of two ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). The first or N-terminal ACT domain of these proteins cluster with the ThrA-like ACT 1 domains (ACT_AKi-HSDH-ThrA-like_1) which includes the threonine-sensitive archaeal Methanococcus jannaschii aspartokinase ACT 1 domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=80.31 E-value=17 Score=25.17 Aligned_cols=45 Identities=11% Similarity=0.197 Sum_probs=32.1
Q ss_pred EEEEEeC---CCcchHHHHHHHHHhCCceEEEEEEEecCCeeeeEEEEEe
Q 022480 219 LLYIETA---DRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSY 265 (296)
Q Consensus 219 vleV~t~---DRPGLL~dIt~~La~~gv~I~~AkI~T~G~ra~D~F~V~~ 265 (296)
.+.+.+. +.||+++++.+.|++.|++|......+.+ ..=.|.+..
T Consensus 3 ~isivg~~~~~~~~~~~~i~~~L~~~~I~v~~i~q~~s~--~~isf~i~~ 50 (66)
T cd04924 3 VVAVVGSGMRGTPGVAGRVFGALGKAGINVIMISQGSSE--YNISFVVAE 50 (66)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecCcc--ceEEEEEeH
Confidence 4555554 78999999999999999999888654422 222366643
No 228
>PRK08818 prephenate dehydrogenase; Provisional
Probab=79.71 E-value=5 Score=39.22 Aligned_cols=49 Identities=14% Similarity=0.221 Sum_probs=39.0
Q ss_pred CeEEEEEEeC-CCccHHHHHHHHHHHCCceEEEEEEEEeCCeEEEEEEEee
Q 022480 101 DATIVQLSFG-DRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITR 150 (296)
Q Consensus 101 ~~t~V~V~~~-DrpGLLa~i~~vL~~~glnI~~A~I~T~~~~~~d~F~V~~ 150 (296)
..+.+.+.-+ |+||.|+++..+|..+|+||.+-.+....++-.- |+|.-
T Consensus 294 ~~~~l~~~v~~d~pG~L~~vl~~la~~~INit~Ies~~~r~~~y~-f~i~~ 343 (370)
T PRK08818 294 EPLTLSVYLPEDRPGSLRTLLHVFEQHGVNLSSIHSSRTPAGELH-FRIGF 343 (370)
T ss_pred cceEEEEECCCCCCChHHHHHHHHHHcCcccceEEEecccCceEE-EEEEE
Confidence 4567777776 9999999999999999999999888444444433 77765
No 229
>cd04937 ACT_AKi-DapG-BS_2 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive AK isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The BS AKI is tetrameric consisting of two alpha and two beta subunits; th
Probab=79.45 E-value=19 Score=25.41 Aligned_cols=28 Identities=18% Similarity=0.265 Sum_probs=24.6
Q ss_pred EEEEEeC---CCccHHHHHHHHHHHCCceEE
Q 022480 104 IVQLSFG---DRLGALIDTMNALKDLGLDVA 131 (296)
Q Consensus 104 ~V~V~~~---DrpGLLa~i~~vL~~~glnI~ 131 (296)
.|.|.|. +.+|+++++..+|.+.|++|.
T Consensus 3 ~isvvG~~~~~~~gi~~~if~aL~~~~I~v~ 33 (64)
T cd04937 3 KVTIIGSRIRGVPGVMAKIVGALSKEGIEIL 33 (64)
T ss_pred EEEEECCCccCCcCHHHHHHHHHHHCCCCEE
Confidence 4667765 789999999999999999996
No 230
>cd04922 ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the second of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathwa
Probab=79.11 E-value=18 Score=24.99 Aligned_cols=32 Identities=16% Similarity=0.136 Sum_probs=26.2
Q ss_pred EEEEEe---CCCccHHHHHHHHHHHCCceEEEEEE
Q 022480 104 IVQLSF---GDRLGALIDTMNALKDLGLDVAKGTV 135 (296)
Q Consensus 104 ~V~V~~---~DrpGLLa~i~~vL~~~glnI~~A~I 135 (296)
.|.+.| ++.+|+++++.+.|.+.|++|.--..
T Consensus 3 ~isvvg~~~~~~~~~~~~i~~~l~~~~I~v~~i~~ 37 (66)
T cd04922 3 ILALVGDGMAGTPGVAATFFSALAKANVNIRAIAQ 37 (66)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEe
Confidence 456665 48899999999999999999976544
No 231
>cd04912 ACT_AKiii-LysC-EC-like_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC) and plants, (Zea mays Ask1, Ask2, and Arabidopsis thaliana AK1). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Like the A. thaliana AK1 (AK1-AT), the E. coli AKIII (LysC) has two bound feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The lysine-sensitive plant isoenzyme is synergistically inhibited by S-adenosylmethionine. A homolog of this group appears to be the Saccharomyces cerevisiae AK (Hom3) which clusters with this group as well. Members of this CD
Probab=78.92 E-value=16 Score=26.79 Aligned_cols=63 Identities=21% Similarity=0.238 Sum_probs=37.6
Q ss_pred EEEEEE---eCCCcchHHHHHHHHHhCCceEEEEEEEecCCeeeeEEEEEeCCCCCChHHHHHHHHHHHH
Q 022480 218 SLLYIE---TADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGGAALNSSLSQVLVNCLRY 284 (296)
Q Consensus 218 TvleV~---t~DRPGLL~dIt~~La~~gv~I~~AkI~T~G~ra~D~F~V~~~g~~L~~~~~~~L~~~L~~ 284 (296)
+.|.|. ..+.||++++|..+|+++|++|...- + ++ ..=.|.+........+...++|.+.|+.
T Consensus 2 ~~Vsi~g~~l~~~~g~~~~if~~L~~~~I~v~~i~--~-s~-~~is~~v~~~~~~~~~~~~~~~~~~l~~ 67 (75)
T cd04912 2 TLLNIKSNRMLGAHGFLAKVFEIFAKHGLSVDLIS--T-SE-VSVSLTLDPTKNLSDQLLLDALVKDLSQ 67 (75)
T ss_pred EEEEEEcCCCCCCccHHHHHHHHHHHcCCeEEEEE--c-CC-cEEEEEEEchhhccchHHHHHHHHHHHh
Confidence 345553 35789999999999999999997763 3 22 2223444332211112234556666554
No 232
>PRK08526 threonine dehydratase; Provisional
Probab=77.46 E-value=19 Score=35.48 Aligned_cols=67 Identities=15% Similarity=0.169 Sum_probs=47.0
Q ss_pred CCeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEeCC----eEEEEEEEeecCCCCCCCChHHHHHHHHHHHH
Q 022480 100 SDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGS----VKQTKFFITRLDTGRKVEDPDLLERIRLTIIN 172 (296)
Q Consensus 100 ~~~t~V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~~~----~~~d~F~V~~~~~g~~l~~~~~l~~L~~~L~~ 172 (296)
.....+.|.-+||||-|.+++..+...|.||.+-.-..... +.+.+.+..+- .+++..++|.+.|.+
T Consensus 324 ~r~~~~~~~~~d~pg~l~~~~~~~~~~~~~i~~~~~~r~~~~~~~~~~~~~~~~e~------~~~~~~~~~~~~l~~ 394 (403)
T PRK08526 324 YRKMKLHVTLVDKPGALMGLTDILKEANANIVKIDYDRFSTKLDYGDAMISITLET------KGKEHQEEIRKILTE 394 (403)
T ss_pred CCEEEEEEEcCCCCCHHHHHHHHHccCCCcEEEEEEEeccCCCCCccEEEEEEEEe------CCHHHHHHHHHHHHH
Confidence 44568899999999999999999999999999877644433 22333333331 134666777776654
No 233
>COG2150 Predicted regulator of amino acid metabolism, contains ACT domain [General function prediction only]
Probab=77.37 E-value=4.4 Score=35.16 Aligned_cols=36 Identities=8% Similarity=0.024 Sum_probs=28.6
Q ss_pred CCeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEE
Q 022480 100 SDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTV 135 (296)
Q Consensus 100 ~~~t~V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I 135 (296)
-+-.++...-.+.||+++.+++.++++||+|..+-.
T Consensus 93 ~gViei~~~~~~~pgi~A~V~~~iak~gi~Irqi~~ 128 (167)
T COG2150 93 LGVIEIYPEDARYPGILAGVASLIAKRGISIRQIIS 128 (167)
T ss_pred CeEEEEEeccCCCccHHHHHHHHHHHcCceEEEEec
Confidence 344445555678899999999999999999998644
No 234
>cd04891 ACT_AK-LysC-DapG-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the first and third, of four, ACT domains present in cyanobacteria AK. Also included are the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (Bacillus subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=77.35 E-value=3.8 Score=27.59 Aligned_cols=28 Identities=21% Similarity=0.513 Sum_probs=24.8
Q ss_pred eCCCcchHHHHHHHHHhCCceEEEEEEE
Q 022480 224 TADRPGLLVEIMKIIADVNVDVESAEID 251 (296)
Q Consensus 224 t~DRPGLL~dIt~~La~~gv~I~~AkI~ 251 (296)
..|.||.+.+|.++|.++|++|......
T Consensus 8 ~~~~~~~~~~i~~~L~~~~i~i~~i~~~ 35 (61)
T cd04891 8 VPDKPGVAAKIFSALAEAGINVDMIVQS 35 (61)
T ss_pred CCCCCcHHHHHHHHHHHcCCcEEEEEEc
Confidence 4788999999999999999999887653
No 235
>cd04912 ACT_AKiii-LysC-EC-like_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC) and plants, (Zea mays Ask1, Ask2, and Arabidopsis thaliana AK1). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Like the A. thaliana AK1 (AK1-AT), the E. coli AKIII (LysC) has two bound feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The lysine-sensitive plant isoenzyme is synergistically inhibited by S-adenosylmethionine. A homolog of this group appears to be the Saccharomyces cerevisiae AK (Hom3) which clusters with this group as well. Members of this CD
Probab=77.33 E-value=26 Score=25.71 Aligned_cols=62 Identities=15% Similarity=0.233 Sum_probs=37.0
Q ss_pred EEEEE---eCCCccHHHHHHHHHHHCCceEEEEEEEEeCCeEEEEEEEeecCCCCCCCChHHHHHHHHHHHH
Q 022480 104 IVQLS---FGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIIN 172 (296)
Q Consensus 104 ~V~V~---~~DrpGLLa~i~~vL~~~glnI~~A~I~T~~~~~~d~F~V~~~~~g~~l~~~~~l~~L~~~L~~ 172 (296)
.|+|. ..+.+|+++++..+|+++|+++..-. .++.. -.|.|... ....+.+.+..|.+.|+.
T Consensus 3 ~Vsi~g~~l~~~~g~~~~if~~L~~~~I~v~~i~---~s~~~-is~~v~~~---~~~~~~~~~~~~~~~l~~ 67 (75)
T cd04912 3 LLNIKSNRMLGAHGFLAKVFEIFAKHGLSVDLIS---TSEVS-VSLTLDPT---KNLSDQLLLDALVKDLSQ 67 (75)
T ss_pred EEEEEcCCCCCCccHHHHHHHHHHHcCCeEEEEE---cCCcE-EEEEEEch---hhccchHHHHHHHHHHHh
Confidence 45553 36789999999999999999995442 23311 13555442 211112355556665554
No 236
>cd04921 ACT_AKi-HSDH-ThrA-like_1 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the first of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pat
Probab=76.99 E-value=17 Score=26.44 Aligned_cols=36 Identities=22% Similarity=0.382 Sum_probs=28.1
Q ss_pred EEEEEE---eCCCcchHHHHHHHHHhCCceEEEEEEEec
Q 022480 218 SLLYIE---TADRPGLLVEIMKIIADVNVDVESAEIDTE 253 (296)
Q Consensus 218 TvleV~---t~DRPGLL~dIt~~La~~gv~I~~AkI~T~ 253 (296)
+.|+|. ..+.+|+++++.++|++.|+++....-.+.
T Consensus 2 ~~I~vvg~~~~~~~~~~~~i~~~L~~~~I~v~~i~~~~~ 40 (80)
T cd04921 2 ALINIEGTGMVGVPGIAARIFSALARAGINVILISQASS 40 (80)
T ss_pred EEEEEEcCCCCCCccHHHHHHHHHHHCCCcEEEEEecCC
Confidence 345563 347899999999999999999988765433
No 237
>TIGR02079 THD1 threonine dehydratase. This model represents threonine dehydratase, the first step in the pathway converting threonine into isoleucine. At least two other clades of biosynthetic threonine dehydratases have been characterized by models TIGR01124 and TIGR01127. Those sequences described by this model are exclusively found in species containg the rest of the isoleucine pathway and which are generally lacking in members of the those other two clades of threonine dehydratases. Members of this clade are also often gene clustered with other elements of the isoleucine pathway.
Probab=76.45 E-value=23 Score=34.87 Aligned_cols=67 Identities=13% Similarity=0.119 Sum_probs=43.7
Q ss_pred CCeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEE-EeCCeEEEEEEEeecCCCCCCCChHHHHHHHHHHHH
Q 022480 100 SDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVN-TEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIIN 172 (296)
Q Consensus 100 ~~~t~V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~-T~~~~~~d~F~V~~~~~g~~l~~~~~l~~L~~~L~~ 172 (296)
.....+.|.-+||||-|.+++..+...+.||..-+-. ..+-....+.+..+- .+++..++|.+.|.+
T Consensus 323 ~r~~~~~v~ipdrPGaL~~~l~~i~~~~~NI~~~~y~~~~~~~~~~v~v~iE~------~~~~h~~~i~~~L~~ 390 (409)
T TIGR02079 323 GLKHYFIVRFPQRPGALREFLNDVLGPNDDITRFEYTKKSNRETGPALIGIEL------NDKEDFAGLLERMAA 390 (409)
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEeeecCCCCeEEEEEEEEe------CCHHHHHHHHHHHHH
Confidence 3456789999999999999999777788899965544 222233333333331 124666777776655
No 238
>cd04913 ACT_AKii-LysC-BS-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is fee
Probab=76.27 E-value=8.4 Score=27.09 Aligned_cols=27 Identities=26% Similarity=0.553 Sum_probs=24.1
Q ss_pred eCCCcchHHHHHHHHHhCCceEEEEEE
Q 022480 224 TADRPGLLVEIMKIIADVNVDVESAEI 250 (296)
Q Consensus 224 t~DRPGLL~dIt~~La~~gv~I~~AkI 250 (296)
..|+||.+++|.+.|++.|++|....-
T Consensus 9 ~~~~~g~~~~i~~~L~~~~I~i~~i~~ 35 (75)
T cd04913 9 VPDKPGVAAKIFGALAEANINVDMIVQ 35 (75)
T ss_pred CCCCCcHHHHHHHHHHHcCCeEEEEEe
Confidence 468999999999999999999997654
No 239
>KOG2663 consensus Acetolactate synthase, small subunit [Amino acid transport and metabolism]
Probab=76.23 E-value=3.1 Score=38.72 Aligned_cols=43 Identities=19% Similarity=0.267 Sum_probs=36.3
Q ss_pred cEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCeeeeEE
Q 022480 217 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKF 261 (296)
Q Consensus 217 ~TvleV~t~DRPGLL~dIt~~La~~gv~I~~AkI~T~G~ra~D~F 261 (296)
.-++.+...|-||.|.+|+-+|+..|+||.++-+-- .++++.|
T Consensus 77 rHvinclVqnEpGvlsRisGvlAaRGfNIdSLvVc~--tevk~Ls 119 (309)
T KOG2663|consen 77 RHVINCLVQNEPGVLSRISGVLAARGFNIDSLVVCL--TEVKALS 119 (309)
T ss_pred ceeEEEEecCCchHHHHHHHHHHhccCCchheeeec--hhhhhhh
Confidence 568888899999999999999999999999988642 3456666
No 240
>PRK14646 hypothetical protein; Provisional
Probab=75.61 E-value=43 Score=28.67 Aligned_cols=60 Identities=12% Similarity=0.100 Sum_probs=42.4
Q ss_pred cHHHHHHHHHHHCCceEEEEEEEEeCCeEEEEEEEeecCCCCCCCChHHHHHHHHHHHHhhc
Q 022480 114 GALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLL 175 (296)
Q Consensus 114 GLLa~i~~vL~~~glnI~~A~I~T~~~~~~d~F~V~~~~~g~~l~~~~~l~~L~~~L~~~L~ 175 (296)
-+...+..++..+|+.+.+..+...++..+=.++|... +|..++ =+.++.+.+.|...|+
T Consensus 8 ~i~~li~p~~~~~G~eLvdve~~~~~~~~~LrV~IDk~-~g~gVt-ldDC~~vSr~is~~LD 67 (155)
T PRK14646 8 KLEILLEKVANEFDLKICSLNIQTNQNPIVIKIIIKKT-NGDDIS-LDDCALFNTPASEEIE 67 (155)
T ss_pred HHHHHHHHHHHHcCCEEEEEEEEeCCCCeEEEEEEECC-CCCCcc-HHHHHHHHHHHHHHhC
Confidence 35667788999999999999999987766434555442 443343 2677777777777665
No 241
>cd04911 ACT_AKiii-YclM-BS_1 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Bacillus subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from Bacillus subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=75.56 E-value=9.7 Score=28.88 Aligned_cols=62 Identities=15% Similarity=0.205 Sum_probs=46.4
Q ss_pred CCCcchHHHHHHHHHhCCceEEEEEEEecCCeeeeEEEEEeCCCCCChHHHHHHHHHHHHHcCCCCCc
Q 022480 225 ADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGGAALNSSLSQVLVNCLRYYLRRPETD 292 (296)
Q Consensus 225 ~DRPGLL~dIt~~La~~gv~I~~AkI~T~G~ra~D~F~V~~~g~~L~~~~~~~L~~~L~~~l~~~~~~ 292 (296)
.-..|++.++.++|.++|+++++.-. ..|.|-|.=++..+.++..+++.+.|+..|...+.+
T Consensus 12 n~evGF~rk~L~I~E~~~is~Eh~PS------GID~~Siii~~~~~~~~~~~~i~~~i~~~~~pD~i~ 73 (76)
T cd04911 12 NREVGFGRKLLSILEDNGISYEHMPS------GIDDISIIIRDNQLTDEKEQKILAEIKEELHPDEIE 73 (76)
T ss_pred cchhcHHHHHHHHHHHcCCCEeeecC------CCccEEEEEEccccchhhHHHHHHHHHHhcCCCEEE
Confidence 45689999999999999999998642 345555654566666655678888999888776554
No 242
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=75.01 E-value=6.8 Score=39.96 Aligned_cols=40 Identities=13% Similarity=0.214 Sum_probs=33.4
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEeCC
Q 022480 101 DATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGS 140 (296)
Q Consensus 101 ~~t~V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~~~ 140 (296)
.+..+.+.-.|+||.+..++.+|.++++||..-++.....
T Consensus 450 ~~~~li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~R~~~ 489 (525)
T TIGR01327 450 EGIMLIILHLDKPGVIGKVGTLLGTAGINIASMQLGRKEK 489 (525)
T ss_pred CccEEEEEecCcCCcchHHHhHHhhcCCChHHcEeecCCC
Confidence 3345566779999999999999999999999988877654
No 243
>cd04919 ACT_AK-Hom3_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=74.16 E-value=27 Score=24.31 Aligned_cols=34 Identities=15% Similarity=0.164 Sum_probs=27.0
Q ss_pred EEEEEeC---CCccHHHHHHHHHHHCCceEEEEEEEE
Q 022480 104 IVQLSFG---DRLGALIDTMNALKDLGLDVAKGTVNT 137 (296)
Q Consensus 104 ~V~V~~~---DrpGLLa~i~~vL~~~glnI~~A~I~T 137 (296)
.|.+.|. +++|.++++.++|.+.|++|.--...+
T Consensus 3 ~isvvg~~~~~~~~~~~~if~~L~~~~I~v~~i~q~~ 39 (66)
T cd04919 3 ILSLVGKHMKNMIGIAGRMFTTLADHRINIEMISQGA 39 (66)
T ss_pred EEEEECCCCCCCcCHHHHHHHHHHHCCCCEEEEEecC
Confidence 4566654 789999999999999999997665433
No 244
>PRK08961 bifunctional aspartate kinase/diaminopimelate decarboxylase protein; Provisional
Probab=73.35 E-value=68 Score=34.85 Aligned_cols=104 Identities=12% Similarity=0.126 Sum_probs=60.7
Q ss_pred CCeEEEEEE---eCCCccHHHHHHHHHHHCCceEEEEEEEEeCCeEEEEEEEeecCCCCCCCChHHHHHHHHHHHHhhcc
Q 022480 100 SDATIVQLS---FGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLK 176 (296)
Q Consensus 100 ~~~t~V~V~---~~DrpGLLa~i~~vL~~~glnI~~A~I~T~~~~~~d~F~V~~~~~g~~l~~~~~l~~L~~~L~~~L~~ 176 (296)
.+.+.|+|. ..+.+|.++++...|.++|+||.-- .+....+ +|.+... .. ....+.++.+...|..
T Consensus 320 ~~v~lItv~~~~~~~~~g~~a~if~~la~~~I~Vd~I--~sse~si--s~~i~~~--~~-~~~~~~~~~l~~~l~~---- 388 (861)
T PRK08961 320 NGIVLVSMETIGMWQQVGFLADVFTLFKKHGLSVDLI--SSSETNV--TVSLDPS--EN-LVNTDVLAALSADLSQ---- 388 (861)
T ss_pred CCEEEEEEecCCccccccHHHHHHHHHHHcCCeEEEE--EcCCCEE--EEEEccc--cc-cchHHHHHHHHHHHhh----
Confidence 345677775 3468999999999999999999654 2222111 3444432 11 0011222222222211
Q ss_pred cCCCchhHhhhccccCccCCCccccccccceeeeccCCCCcEEEEEEeC---CCcchHHHHHHHHHhCCceE
Q 022480 177 YHPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIETA---DRPGLLVEIMKIIADVNVDV 245 (296)
Q Consensus 177 ~~~~~~~~La~~~~~~~~~~~r~~~~~~~~~V~v~~~~~~~TvleV~t~---DRPGLL~dIt~~La~~gv~I 245 (296)
. ..|.+.+ +..+|.|.+. .+||+++++..+|++.||++
T Consensus 389 --~--------------------------~~i~~~~---~va~ISvVG~gm~~~~gv~arif~aL~~~~I~~ 429 (861)
T PRK08961 389 --I--------------------------CRVKIIV---PCAAVSLVGRGMRSLLHKLGPAWATFGAERVHL 429 (861)
T ss_pred --c--------------------------CcEEEeC---CeEEEEEeCCCcccCcChHHHHHHHHhhcCeEE
Confidence 0 0011122 3477777775 89999999999999977654
No 245
>PRK14634 hypothetical protein; Provisional
Probab=73.30 E-value=51 Score=28.19 Aligned_cols=60 Identities=17% Similarity=0.026 Sum_probs=42.3
Q ss_pred cHHHHHHHHHHHCCceEEEEEEEEeCCeEEEEEEEeecCCCCCCCChHHHHHHHHHHHHhhc
Q 022480 114 GALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLL 175 (296)
Q Consensus 114 GLLa~i~~vL~~~glnI~~A~I~T~~~~~~d~F~V~~~~~g~~l~~~~~l~~L~~~L~~~L~ 175 (296)
-+...+..++..+|+.+.+..+...+.+.+=..+|... +|..++ =+.++.+.+.|...|+
T Consensus 8 ~i~~l~~~~~~~~G~elvdve~~~~~~~~~lrV~ID~~-~g~~v~-lddC~~vSr~is~~LD 67 (155)
T PRK14634 8 DLETLASATAADKGFELCGIQVLTHLQPMTLQVQIRRS-SGSDVS-LDDCAGFSGPMGEALE 67 (155)
T ss_pred HHHHHHHHHHHHcCCEEEEEEEEeCCCCcEEEEEEECC-CCCccc-HHHHHHHHHHHHHHhc
Confidence 45666778889999999999998887765434555543 563343 2677778887777665
No 246
>PLN02550 threonine dehydratase
Probab=73.24 E-value=96 Score=32.38 Aligned_cols=151 Identities=8% Similarity=0.085 Sum_probs=83.7
Q ss_pred EEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEeCCeEEEEEEEeecCCCCCCCChHHHHHHHHHHHHhhcccC-CCc
Q 022480 103 TIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLKYH-PES 181 (296)
Q Consensus 103 t~V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~~~~~~d~F~V~~~~~g~~l~~~~~l~~L~~~L~~~L~~~~-~~~ 181 (296)
..+.|.-+||||-|.+++.+|... ||.+-.-....-+...+++..+- .+++.+++|...|.+. +.. .++
T Consensus 418 ~~~~v~ipd~pG~l~~~~~~l~~~--ni~~~~~~~~~~~~~~v~v~ie~------~~~~~~~~i~~~l~~~--g~~~~~l 487 (591)
T PLN02550 418 AVLATFMPEEPGSFKRFCELVGPM--NITEFKYRYSSEKEALVLYSVGV------HTEQELQALKKRMESA--QLRTVNL 487 (591)
T ss_pred EEEEEEcCCCCCHHHHHHHHhhhh--cceEEEEEecCCCceEEEEEEEe------CCHHHHHHHHHHHHHC--CCCeEeC
Confidence 568999999999999999999986 77765554433233333443331 1346777777777652 111 011
Q ss_pred h-hHhhhccccCccCCCcccccc-ccceeeeccCCCCcEEEEEEeCCCcchHHHHHHHHHh-CCceEEEEEEEecCCeee
Q 022480 182 S-EQLAMGEAFGIKAPEKKLDVD-IATHIHVKEDGPKRSLLYIETADRPGLLVEIMKIIAD-VNVDVESAEIDTEGLVAK 258 (296)
Q Consensus 182 ~-~~La~~~~~~~~~~~r~~~~~-~~~~V~v~~~~~~~TvleV~t~DRPGLL~dIt~~La~-~gv~I~~AkI~T~G~ra~ 258 (296)
. ..++. .|.+.+. -... + ..--++.+.=+.|||-|-++.++|.. .+|.-.+=+ ..|+...
T Consensus 488 ~~~~~~~---------~~LR~v~g~ra~--~----~~E~l~~v~fPErpGAl~~Fl~~lg~~~nITeF~YR--~~~~~~a 550 (591)
T PLN02550 488 TSNDLVK---------DHLRYLMGGRAI--V----KDELLYRFVFPERPGALMKFLDAFSPRWNISLFHYR--GQGETGA 550 (591)
T ss_pred CCChHHh---------hhhhheeccccc--c----CceEEEEEEecCcCCHHHHHHHhhCCCCceeeEEee--cCCCCCc
Confidence 0 12221 1111111 1111 1 12467888899999999999998886 355544444 3344333
Q ss_pred eEEEEEeCCCCCChHHHHHHHHHHHH
Q 022480 259 DKFHVSYGGAALNSSLSQVLVNCLRY 284 (296)
Q Consensus 259 D~F~V~~~g~~L~~~~~~~L~~~L~~ 284 (296)
.+|.==. +.+++.++|.+.|.+
T Consensus 551 ~vlvGi~----v~~~e~~~l~~~l~~ 572 (591)
T PLN02550 551 NVLVGIQ----VPPEEMQEFKSRANA 572 (591)
T ss_pred cEEEEEe----eCHHHHHHHHHHHHH
Confidence 3333211 112345666666653
No 247
>PRK12483 threonine dehydratase; Reviewed
Probab=72.42 E-value=1e+02 Score=31.59 Aligned_cols=156 Identities=11% Similarity=0.100 Sum_probs=84.1
Q ss_pred CCeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEeCCeEEEEEEEeecCCCCCCCChHHH-HHHHHHHHHhhcccC
Q 022480 100 SDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLL-ERIRLTIINNLLKYH 178 (296)
Q Consensus 100 ~~~t~V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~~~~~~d~F~V~~~~~g~~l~~~~~l-~~L~~~L~~~L~~~~ 178 (296)
.....+.|.-+||||-|.+++.+|... ||.+-.-.....+...+++..+- . +++.. +.|.+.|.+. ++.
T Consensus 343 ~r~~~~~v~~~d~pG~l~~~~~~l~~~--ni~~~~~~~~~~~~~~v~v~ie~-~-----~~~~~~~~i~~~l~~~--g~~ 412 (521)
T PRK12483 343 QREAIIAVTIPEQPGSFKAFCAALGKR--QITEFNYRYADAREAHLFVGVQT-H-----PRHDPRAQLLASLRAQ--GFP 412 (521)
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHhhhc--CeEEEEEEecCCCeeEEEEEEEe-C-----ChhhhHHHHHHHHHHC--CCC
Confidence 345678999999999999999999988 88766555444333444544431 1 22443 6666666541 111
Q ss_pred CC-c-hhHhhhccccCccCCCccccccccceeeeccCCCCcEEEEEEeCCCcchHHHHHHHHHh-CCceEEEEEEEecCC
Q 022480 179 PE-S-SEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIETADRPGLLVEIMKIIAD-VNVDVESAEIDTEGL 255 (296)
Q Consensus 179 ~~-~-~~~La~~~~~~~~~~~r~~~~~~~~~V~v~~~~~~~TvleV~t~DRPGLL~dIt~~La~-~gv~I~~AkI~T~G~ 255 (296)
.. . ...+++. ..+.+ +-.+ ......--++.+.=+.|||=|-+++++|-. .+|.-.+=+.. |.
T Consensus 413 ~~dlsdne~~k~---------h~r~~-~g~~---~~~~~~E~~~~v~iPE~pGa~~~f~~~l~~~~niTeF~YR~~--~~ 477 (521)
T PRK12483 413 VLDLTDDELAKL---------HIRHM-VGGR---APLAHDERLFRFEFPERPGALMKFLSRLGPRWNISLFHYRNH--GA 477 (521)
T ss_pred eEECCCCHHHHH---------HHHhc-cCCC---CCCCCceEEEEEEcCCCCcHHHHHHHHhCCCcceeeeeecCC--CC
Confidence 00 0 0112110 00001 1110 000112467888899999999999999996 46665444432 33
Q ss_pred eeeeEEEEEeCCCCCChHHHHHHHHHHHH
Q 022480 256 VAKDKFHVSYGGAALNSSLSQVLVNCLRY 284 (296)
Q Consensus 256 ra~D~F~V~~~g~~L~~~~~~~L~~~L~~ 284 (296)
....+|.=-. +.+++.++|.+.|..
T Consensus 478 ~~a~v~vgi~----~~~~~~~~~~~~l~~ 502 (521)
T PRK12483 478 ADGRVLAGLQ----VPEDERAALDAALAA 502 (521)
T ss_pred CceEEEEEEe----eChhHHHHHHHHHHH
Confidence 3333332111 112344666666653
No 248
>PRK08526 threonine dehydratase; Provisional
Probab=72.40 E-value=26 Score=34.50 Aligned_cols=65 Identities=17% Similarity=0.272 Sum_probs=46.2
Q ss_pred CcEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCe-----eeeEEEEEeCCCCCChHHHHHHHHHHHH
Q 022480 216 KRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLV-----AKDKFHVSYGGAALNSSLSQVLVNCLRY 284 (296)
Q Consensus 216 ~~TvleV~t~DRPGLL~dIt~~La~~gv~I~~AkI~T~G~r-----a~D~F~V~~~g~~L~~~~~~~L~~~L~~ 284 (296)
....+.|.-+||||-|.++++.+.+.+.||....-...... +.=.+-+...| .+++++|.+.|++
T Consensus 325 r~~~~~~~~~d~pg~l~~~~~~~~~~~~~i~~~~~~r~~~~~~~~~~~~~~~~e~~~----~~~~~~~~~~l~~ 394 (403)
T PRK08526 325 RKMKLHVTLVDKPGALMGLTDILKEANANIVKIDYDRFSTKLDYGDAMISITLETKG----KEHQEEIRKILTE 394 (403)
T ss_pred CEEEEEEEcCCCCCHHHHHHHHHccCCCcEEEEEEEeccCCCCCccEEEEEEEEeCC----HHHHHHHHHHHHH
Confidence 36889999999999999999999999999988776543322 22223332232 3367778777764
No 249
>cd04916 ACT_AKiii-YclM-BS_2 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. B. subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from B. subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=72.36 E-value=29 Score=23.95 Aligned_cols=34 Identities=9% Similarity=0.242 Sum_probs=28.0
Q ss_pred EEEEEeC---CCcchHHHHHHHHHhCCceEEEEEEEe
Q 022480 219 LLYIETA---DRPGLLVEIMKIIADVNVDVESAEIDT 252 (296)
Q Consensus 219 vleV~t~---DRPGLL~dIt~~La~~gv~I~~AkI~T 252 (296)
.+.+.+. ++||++++|...|++.|+++......+
T Consensus 3 lisivg~~~~~~~~~~~~i~~~L~~~~i~v~~i~~~~ 39 (66)
T cd04916 3 LIMVVGEGMKNTVGVSARATAALAKAGINIRMINQGS 39 (66)
T ss_pred EEEEEcCCCCCCccHHHHHHHHHHHCCCCEEEEEecC
Confidence 4556654 789999999999999999999886544
No 250
>cd04891 ACT_AK-LysC-DapG-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the first and third, of four, ACT domains present in cyanobacteria AK. Also included are the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (Bacillus subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=71.76 E-value=26 Score=23.23 Aligned_cols=28 Identities=21% Similarity=0.316 Sum_probs=24.5
Q ss_pred eCCCccHHHHHHHHHHHCCceEEEEEEE
Q 022480 109 FGDRLGALIDTMNALKDLGLDVAKGTVN 136 (296)
Q Consensus 109 ~~DrpGLLa~i~~vL~~~glnI~~A~I~ 136 (296)
.+|.+|.++++.+.|.++|++|......
T Consensus 8 ~~~~~~~~~~i~~~L~~~~i~i~~i~~~ 35 (61)
T cd04891 8 VPDKPGVAAKIFSALAEAGINVDMIVQS 35 (61)
T ss_pred CCCCCcHHHHHHHHHHHcCCcEEEEEEc
Confidence 5888999999999999999999776553
No 251
>cd04892 ACT_AK-like_2 ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the second of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). The exception in this group, is the inclusion of the first ACT domain of the bifunctional aspartokinase - homoserine dehydrogenase-like enzyme group (ACT_AKi-HSDH-ThrA-like_1) which includes the monofunctional, threonine-sensitive, aspartokinase found in Methanococcus jannaschii and other related archaeal species. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. AK is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of AK with different repressors an
Probab=71.04 E-value=8.9 Score=25.92 Aligned_cols=32 Identities=19% Similarity=0.384 Sum_probs=25.9
Q ss_pred EEEEEeC---CCcchHHHHHHHHHhCCceEEEEEE
Q 022480 219 LLYIETA---DRPGLLVEIMKIIADVNVDVESAEI 250 (296)
Q Consensus 219 vleV~t~---DRPGLL~dIt~~La~~gv~I~~AkI 250 (296)
.|++.+. +++|++++|..+|++.|+++.....
T Consensus 2 ~i~i~g~~~~~~~~~~~~i~~~l~~~~i~v~~i~~ 36 (65)
T cd04892 2 LVSVVGAGMRGTPGVAARIFSALAEAGINIIMISQ 36 (65)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCcEEEEEc
Confidence 3556444 8899999999999999999976644
No 252
>COG4492 PheB ACT domain-containing protein [General function prediction only]
Probab=70.82 E-value=20 Score=30.29 Aligned_cols=50 Identities=16% Similarity=0.169 Sum_probs=40.4
Q ss_pred EeecCCCCeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEeCCeEE
Q 022480 94 IDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQ 143 (296)
Q Consensus 94 i~~~~~~~~t~V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~~~~~~ 143 (296)
+..-..+.-..+.+.-.||.|.|+++-.++++.+|||+.-+...--++.+
T Consensus 64 f~~m~k~ri~TL~l~ledr~G~LS~vLd~iA~~~~nvLTI~Q~ipl~g~A 113 (150)
T COG4492 64 FYDMLKERIITLSLSLEDRVGILSDVLDVIAREEINVLTIHQTIPLQGRA 113 (150)
T ss_pred hhhcccceEEEEEEEEhhhhhhHHHHHHHHHHhCCcEEEEecccccCcee
Confidence 33334455678899999999999999999999999999888766656654
No 253
>PRK10622 pheA bifunctional chorismate mutase/prephenate dehydratase; Provisional
Probab=69.85 E-value=34 Score=33.63 Aligned_cols=52 Identities=17% Similarity=0.277 Sum_probs=40.2
Q ss_pred eEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEeCCe-EEEEEEEeecCCCC
Q 022480 102 ATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSV-KQTKFFITRLDTGR 155 (296)
Q Consensus 102 ~t~V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~~~~-~~d~F~V~~~~~g~ 155 (296)
-+.+.+..+|+||.|+++-+.|+..|+|+.+-.-.-.+++ +--.|+|.- +|.
T Consensus 297 ktsl~~~~~~~pGaL~~~L~~Fa~~giNLtkIeSRP~~~~~~~Y~Ffid~--eg~ 349 (386)
T PRK10622 297 KTTLLMATGQQAGALVEALLVLRNHNLIMTKLESRPIHGNPWEEMFYLDV--QAN 349 (386)
T ss_pred cEEEEEEcCCCCcHHHHHHHHHHHcCCCeeEEEeeecCCCCceEEEEEEE--eCC
Confidence 5666677789999999999999999999987666655543 345588876 464
No 254
>cd04913 ACT_AKii-LysC-BS-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is fee
Probab=69.12 E-value=33 Score=23.92 Aligned_cols=27 Identities=19% Similarity=0.234 Sum_probs=23.5
Q ss_pred eCCCccHHHHHHHHHHHCCceEEEEEE
Q 022480 109 FGDRLGALIDTMNALKDLGLDVAKGTV 135 (296)
Q Consensus 109 ~~DrpGLLa~i~~vL~~~glnI~~A~I 135 (296)
.+|++|.++++++.|.+.|+||.....
T Consensus 9 ~~~~~g~~~~i~~~L~~~~I~i~~i~~ 35 (75)
T cd04913 9 VPDKPGVAAKIFGALAEANINVDMIVQ 35 (75)
T ss_pred CCCCCcHHHHHHHHHHHcCCeEEEEEe
Confidence 478999999999999999999985443
No 255
>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional
Probab=69.04 E-value=1.1e+02 Score=33.28 Aligned_cols=105 Identities=14% Similarity=0.085 Sum_probs=64.2
Q ss_pred CCeEEEEEEeC---CCccHHHHHHHHHHHCCceEEEEEEEEeCCeEEEEEEEeecCCCCCCCChHHHHHHHHHHHHhhcc
Q 022480 100 SDATIVQLSFG---DRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLK 176 (296)
Q Consensus 100 ~~~t~V~V~~~---DrpGLLa~i~~vL~~~glnI~~A~I~T~~~~~~d~F~V~~~~~g~~l~~~~~l~~L~~~L~~~L~~ 176 (296)
.+.+.|+|.+. +.+|.++++.++|.++|++|.--...+. +. --.|.+.. ..++++...|.+ +..
T Consensus 315 ~~v~~i~i~~~~~~g~~g~~~~if~~l~~~~I~v~~i~~~~s-~~-sis~~i~~----------~~~~~~~~~l~~-~~~ 381 (810)
T PRK09466 315 DDVCLIELQVPASHDFKLAQKELDQLLKRAQLRPLAVGVHPD-RQ-LLQLAYTS----------EVADSALKLLDD-AAL 381 (810)
T ss_pred CCEEEEEEecCCcCCcchHHHHHHHHHHHCCCeEEEEEecCC-Cc-EEEEEEeH----------HHHHHHHHHHHh-hcC
Confidence 45567777765 7789999999999999999875543322 22 11233322 122333332322 100
Q ss_pred cCCCchhHhhhccccCccCCCccccccccceeeeccCCCCcEEEEEEeC---CCcchHHHHHHHHHhCCceEEEE
Q 022480 177 YHPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIETA---DRPGLLVEIMKIIADVNVDVESA 248 (296)
Q Consensus 177 ~~~~~~~~La~~~~~~~~~~~r~~~~~~~~~V~v~~~~~~~TvleV~t~---DRPGLL~dIt~~La~~gv~I~~A 248 (296)
. ..|.+.. +...|.|.+. .+||+..++..+|.+.||++..-
T Consensus 382 ---~-------------------------~~i~v~~---~~a~VsvVG~gm~~~~gv~~~~f~aL~~~~I~ii~~ 425 (810)
T PRK09466 382 ---P-------------------------GELKLRE---GLALVALVGAGVTRNPLHCHRFYQQLKDQPVEFIWQ 425 (810)
T ss_pred ---C-------------------------CcEEEeC---CeEEEEEeCCCcccCccHHHHHHHHHHhCCCcEEEE
Confidence 0 1122222 3577777774 68999999999999999988443
No 256
>PRK14636 hypothetical protein; Provisional
Probab=68.92 E-value=56 Score=28.62 Aligned_cols=62 Identities=13% Similarity=0.033 Sum_probs=43.2
Q ss_pred CccHHHHHHHHHHHCCceEEEEEEEEeCCeEEEEEEEeecCCCCCCCChHHHHHHHHHHHHhhc
Q 022480 112 RLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLL 175 (296)
Q Consensus 112 rpGLLa~i~~vL~~~glnI~~A~I~T~~~~~~d~F~V~~~~~g~~l~~~~~l~~L~~~L~~~L~ 175 (296)
..-+...+..++..+|+.+.+..+...+...+-.++|... +|..++ =+.++.+.+.|...|+
T Consensus 4 ~~~i~~lvep~~~~~GleLvdve~~~~~~~~~lrV~ID~~-~~ggV~-lDDC~~vSr~Is~~LD 65 (176)
T PRK14636 4 IAALTALIEPEAKALGLDLVRVAMFGGKSDPTLQIMAERP-DTRQLV-IEDCAALSRRLSDVFD 65 (176)
T ss_pred HHHHHHHHHHHHHHcCCEEEEEEEEcCCCCeEEEEEEECC-CCCCcC-HHHHHHHHHHHHHHhc
Confidence 3446667788899999999999998877655434555442 333343 3777888888887775
No 257
>PRK14645 hypothetical protein; Provisional
Probab=68.11 E-value=75 Score=27.20 Aligned_cols=62 Identities=23% Similarity=0.169 Sum_probs=43.0
Q ss_pred CccHHHHHHHHHHHCCceEEEEEEEEeCCeEEEEEEEeecCCCCCCCChHHHHHHHHHHHHhhc
Q 022480 112 RLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLL 175 (296)
Q Consensus 112 rpGLLa~i~~vL~~~glnI~~A~I~T~~~~~~d~F~V~~~~~g~~l~~~~~l~~L~~~L~~~L~ 175 (296)
..-+-..+..++..+|+.+.+..+...++..+-.++|... +|..+. =+.++.+.+.|...|+
T Consensus 8 ~~~i~~li~~~~~~~G~elvdve~~~~~~~~ilrV~ID~~-~~~~v~-lddC~~vSr~is~~LD 69 (154)
T PRK14645 8 NPDLQQLAEGALEPLGYEVLEVQVQRSGGKRIVLVRIDRK-DEQPVT-VEDLERASRALEAELD 69 (154)
T ss_pred HHHHHHHHHHHHHHcCCEEEEEEEEeCCCCeEEEEEEECC-CCCCcC-HHHHHHHHHHHHHHhc
Confidence 3446677888999999999999998877655434445432 343343 2677888888877665
No 258
>PRK08639 threonine dehydratase; Validated
Probab=67.57 E-value=47 Score=32.80 Aligned_cols=67 Identities=10% Similarity=0.079 Sum_probs=42.9
Q ss_pred CCeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEE-eCCeEEEEEEEeecCCCCCCCChHHHHHHHHHHHH
Q 022480 100 SDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNT-EGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIIN 172 (296)
Q Consensus 100 ~~~t~V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T-~~~~~~d~F~V~~~~~g~~l~~~~~l~~L~~~L~~ 172 (296)
.....+.+.-+||||-|.+++..+...+.||..-+-.. .+.....+++..+ ..+++..++|.+.|.+
T Consensus 334 ~r~~~~~v~ipdrPGaL~~~l~~i~~~~~NI~~~~~~~~~~~~~~~v~v~iE------~~~~~h~~~i~~~L~~ 401 (420)
T PRK08639 334 GLKHYFIVNFPQRPGALREFLDDVLGPNDDITRFEYLKKNNRETGPVLVGIE------LKDAEDYDGLIERMEA 401 (420)
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEEeecCCCCceEEEEEEE------eCCHHHHHHHHHHHHH
Confidence 34467899999999999999997777777999875442 2222222232222 1123566777777665
No 259
>cd04924 ACT_AK-Arch_2 ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). Included in this CD is the second of two ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). The first or N-terminal ACT domain of these proteins cluster with the ThrA-like ACT 1 domains (ACT_AKi-HSDH-ThrA-like_1) which includes the threonine-sensitive archaeal Methanococcus jannaschii aspartokinase ACT 1 domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=67.39 E-value=38 Score=23.29 Aligned_cols=33 Identities=18% Similarity=0.163 Sum_probs=26.5
Q ss_pred EEEEEeC---CCccHHHHHHHHHHHCCceEEEEEEE
Q 022480 104 IVQLSFG---DRLGALIDTMNALKDLGLDVAKGTVN 136 (296)
Q Consensus 104 ~V~V~~~---DrpGLLa~i~~vL~~~glnI~~A~I~ 136 (296)
.|.++|. +.+|+++++.+.|++.|++|.--...
T Consensus 3 ~isivg~~~~~~~~~~~~i~~~L~~~~I~v~~i~q~ 38 (66)
T cd04924 3 VVAVVGSGMRGTPGVAGRVFGALGKAGINVIMISQG 38 (66)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEec
Confidence 4566654 78999999999999999999765543
No 260
>PF05088 Bac_GDH: Bacterial NAD-glutamate dehydrogenase
Probab=67.12 E-value=54 Score=37.97 Aligned_cols=88 Identities=16% Similarity=0.079 Sum_probs=65.6
Q ss_pred CCcEEEEeecC--CCCeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEeCC-----eEEEEEEEeecCCCCCCCCh
Q 022480 88 PMPHVLIDQDS--NSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGS-----VKQTKFFITRLDTGRKVEDP 160 (296)
Q Consensus 88 ~~p~V~i~~~~--~~~~t~V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~~~-----~~~d~F~V~~~~~g~~l~~~ 160 (296)
.+..|.+.... .++.+.+.+|.+.++..|.++.-+|..+|+.|.+.+-+.... .++.-|.+... .+..+...
T Consensus 473 ~~~~~~l~~~~~~~~~~~~lkiy~~~~~~~Ls~vlPilenlGl~V~~e~~~~i~~~~~~~~~i~~F~l~~~-~~~~~~~~ 551 (1528)
T PF05088_consen 473 GPLAVDLYRPAGAGPGRLRLKIYHPGEPLPLSDVLPILENLGLRVIDERPYEIRRADGRRVWIHDFGLQYP-DGDALDLD 551 (1528)
T ss_pred CCceEEEeccCCCCCCeEEEEEEcCCCCcCHHHHHHHHHhCCCEEEEEecceeecCCCceEEEEEEEEecC-CCccccHH
Confidence 34566665333 346789999999999999999999999999999998766542 34677888885 55544444
Q ss_pred HHHHHHHHHHHHhhcc
Q 022480 161 DLLERIRLTIINNLLK 176 (296)
Q Consensus 161 ~~l~~L~~~L~~~L~~ 176 (296)
+..+.+++.+..+..+
T Consensus 552 ~~~~~~~~a~~~v~~g 567 (1528)
T PF05088_consen 552 DIRERFEEAFEAVWNG 567 (1528)
T ss_pred HHHHHHHHHHHHHhcC
Confidence 6667788887776543
No 261
>COG3978 Acetolactate synthase (isozyme II), small (regulatory) subunit [Function unknown]
Probab=66.79 E-value=51 Score=25.42 Aligned_cols=64 Identities=11% Similarity=0.093 Sum_probs=46.1
Q ss_pred eEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEeCC--eEEEEEEEeecCCCCCCCChHHHHHHHHHHHHhh
Q 022480 102 ATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGS--VKQTKFFITRLDTGRKVEDPDLLERIRLTIINNL 174 (296)
Q Consensus 102 ~t~V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~~~--~~~d~F~V~~~~~g~~l~~~~~l~~L~~~L~~~L 174 (296)
.+.+.+.++++|+.|.++-++....|+.|..-..++..+ .+---|.| + +.+++ +.|...|.++.
T Consensus 3 qyqldl~ar~~pe~leRVLrvtrhRGF~vcamnmt~~~da~~~nie~tV-~--s~R~~------~lL~~QLeKl~ 68 (86)
T COG3978 3 QYQLDLSARFNPETLERVLRVTRHRGFRVCAMNMTAAVDAGNANIELTV-D--SDRSV------DLLTSQLEKLY 68 (86)
T ss_pred eEEEeeeccCChHHHHHHHHHhhhcCeEEEEeecccccccccceEEEEE-c--CCCCh------HHHHHHHHHHc
Confidence 468899999999999999999999999999888877743 33222434 3 23332 55667776643
No 262
>cd04923 ACT_AK-LysC-DapG-like_2 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the second and fourth, of four, ACT domains present in cyanobacteria AK. Also included are the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (B. subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=66.76 E-value=37 Score=22.96 Aligned_cols=30 Identities=20% Similarity=0.472 Sum_probs=25.0
Q ss_pred EEEEe---CCCcchHHHHHHHHHhCCceEEEEE
Q 022480 220 LYIET---ADRPGLLVEIMKIIADVNVDVESAE 249 (296)
Q Consensus 220 leV~t---~DRPGLL~dIt~~La~~gv~I~~Ak 249 (296)
|.|.+ .+.||++.+|.+.|.+.|+++....
T Consensus 3 v~v~g~~~~~~~~~~~~i~~~L~~~~i~v~~i~ 35 (63)
T cd04923 3 VSIVGAGMRSHPGVAAKMFKALAEAGINIEMIS 35 (63)
T ss_pred EEEECCCCCCCccHHHHHHHHHHHCCCCEEEEE
Confidence 45544 4779999999999999999998775
No 263
>cd04868 ACT_AK-like ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes each of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). Typically, AK consists of two ACT domains in a tandem repeat, but the second ACT domain is inserted within the first, resulting in, what is normally the terminal beta strand of ACT2, formed from a region N-terminal of ACT1. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Aspartokinase is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind am
Probab=66.37 E-value=34 Score=22.34 Aligned_cols=32 Identities=19% Similarity=0.167 Sum_probs=25.3
Q ss_pred EEEEEeCC---CccHHHHHHHHHHHCCceEEEEEE
Q 022480 104 IVQLSFGD---RLGALIDTMNALKDLGLDVAKGTV 135 (296)
Q Consensus 104 ~V~V~~~D---rpGLLa~i~~vL~~~glnI~~A~I 135 (296)
.|+|.+.+ .+|.+.++.++|.++|++|..-..
T Consensus 2 ~i~v~g~~~~~~~~~~~~i~~~l~~~~i~i~~i~~ 36 (60)
T cd04868 2 KVSIVGVGMRGTPGVAAKIFSALAEAGINVDMISQ 36 (60)
T ss_pred EEEEECCCCCCCCCHHHHHHHHHHHCCCcEEEEEc
Confidence 34555554 899999999999999999976544
No 264
>TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, long form. Forms scoring between the trusted and noise cutoff tend to branch with this subgroup of threonine ammonia-lyase phylogenetically but have only a single copy of the C-terminal domain.
Probab=65.53 E-value=52 Score=33.44 Aligned_cols=128 Identities=12% Similarity=0.186 Sum_probs=74.0
Q ss_pred CCeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEeCCeEEEEEEEeecCCCCCCCChHHHHHHHHHHHHhhcccCC
Q 022480 100 SDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLKYHP 179 (296)
Q Consensus 100 ~~~t~V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~~~~~~d~F~V~~~~~g~~l~~~~~l~~L~~~L~~~L~~~~~ 179 (296)
..-..+.|.-|||||-|.+++.+|.. .||..-+-...+.....+|+...- .+++.++.|.+.|.+ . ++..
T Consensus 323 ~re~~l~V~iPerPGal~~f~~~i~~--~nItef~yr~~~~~~a~v~vgie~------~~~~~~~~l~~~L~~-~-Gy~~ 392 (499)
T TIGR01124 323 QREALLAVTIPEQPGSFLKFCELLGN--RNITEFNYRYADRKDAHIFVGVQL------SNPQERQEILARLND-G-GYSV 392 (499)
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHhhh--cceEEEEEEecCCCeEEEEEEEEe------CCHHHHHHHHHHHHH-c-CCCe
Confidence 34567899999999999999999997 577766655444444555655442 134677777777765 1 1110
Q ss_pred -Cc-hhHhhhccccCccCCCccccccccceeeeccCCCCcEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEE
Q 022480 180 -ES-SEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIETADRPGLLVEIMKIIADVNVDVESAEID 251 (296)
Q Consensus 180 -~~-~~~La~~~~~~~~~~~r~~~~~~~~~V~v~~~~~~~TvleV~t~DRPGLL~dIt~~La~~gv~I~~AkI~ 251 (296)
+. ...+++ ....++ +-.+ .....+--+..++=+-|||-|-++..+|. -+-||...+-.
T Consensus 393 ~dls~ne~~k---------~h~r~~-~g~~---~~~~~~e~~~~~~fperpgaL~~Fl~~l~-~~~~It~f~Yr 452 (499)
T TIGR01124 393 VDLTDDELAK---------LHVRYM-VGGR---PPHVENERLYSFEFPERPGALLRFLNTLQ-GYWNISLFHYR 452 (499)
T ss_pred EECCCCHHHH---------HHHHhc-cCCC---CCCCCCceEEEEeCCCCccHHHHHHHhcC-CCCceeeEEEe
Confidence 00 011211 000011 1110 00011235777889999999998877443 34577766653
No 265
>cd04918 ACT_AK1-AT_2 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the second of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine (SAM). This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. In its inactive state, Arabidopsis AK1 binds the effectors lysine and SAM (two molecules each) at the interface of two ACT1 domain subunits. The second ACT domain (ACT2), this CD, does not interact with an effector. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=64.54 E-value=48 Score=23.47 Aligned_cols=43 Identities=9% Similarity=0.123 Sum_probs=30.6
Q ss_pred EEEEEeC--CCcchHHHHHHHHHhCCceEEEEEEEecCCeeeeE-EEEE
Q 022480 219 LLYIETA--DRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDK-FHVS 264 (296)
Q Consensus 219 vleV~t~--DRPGLL~dIt~~La~~gv~I~~AkI~T~G~ra~D~-F~V~ 264 (296)
+|.+.+. ..+|++.++.++|++.|++|....-.+ ....+ |.|.
T Consensus 3 ~VsvVG~~~~~~~~~~~i~~aL~~~~I~v~~i~~g~---s~~sis~~v~ 48 (65)
T cd04918 3 IISLIGNVQRSSLILERAFHVLYTKGVNVQMISQGA---SKVNISLIVN 48 (65)
T ss_pred EEEEECCCCCCccHHHHHHHHHHHCCCCEEEEEecC---ccceEEEEEe
Confidence 4455544 468999999999999999998776443 44444 5553
No 266
>cd04890 ACT_AK-like_1 ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the first of two ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids, lysine, threonine, methionine, and isoleucine. This CD, includes the first ACT domain of the Escherichia coli (EC) isoenzyme, AKIII (LysC) and the Arabidopsis isoenzyme, asparate kinase 1, both enzymes monofunctional and involved in lysine synthesis, as well as the the first ACT domain of Bacillus subtilis (BS) isoenzyme, AKIII (YclM), and of the Saccharomyces cerevisiae AK (Hom3). Also included are the first ACT domains of the Methylomicrobium alcaliphilum AK, the first enzyme of the ectoine biosynthetic pathway. Members of this CD bel
Probab=64.53 E-value=42 Score=23.13 Aligned_cols=24 Identities=21% Similarity=0.285 Sum_probs=21.8
Q ss_pred CCCccHHHHHHHHHHHCCceEEEE
Q 022480 110 GDRLGALIDTMNALKDLGLDVAKG 133 (296)
Q Consensus 110 ~DrpGLLa~i~~vL~~~glnI~~A 133 (296)
.+++|+.+++.++|.++|+++..-
T Consensus 11 ~~~~~~~~~if~~l~~~~i~v~~i 34 (62)
T cd04890 11 NGEVGFLRKIFEILEKHGISVDLI 34 (62)
T ss_pred CcccCHHHHHHHHHHHcCCeEEEE
Confidence 478999999999999999999875
No 267
>cd04936 ACT_AKii-LysC-BS-like_2 ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis strain 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive AK isoenzymes. The B. subtilis strain 168 AKII is induced by methionine and repressed and inhibited by lysine. Although C. glutamicum is known to contain a single AK, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regu
Probab=63.68 E-value=15 Score=24.99 Aligned_cols=30 Identities=17% Similarity=0.450 Sum_probs=25.1
Q ss_pred EEEEe---CCCcchHHHHHHHHHhCCceEEEEE
Q 022480 220 LYIET---ADRPGLLVEIMKIIADVNVDVESAE 249 (296)
Q Consensus 220 leV~t---~DRPGLL~dIt~~La~~gv~I~~Ak 249 (296)
|.|.+ .+.||++.+|.+.|++.|+++....
T Consensus 3 i~v~g~~~~~~~~~~~~i~~~L~~~~i~v~~i~ 35 (63)
T cd04936 3 VSIVGAGMRSHPGVAAKMFEALAEAGINIEMIS 35 (63)
T ss_pred EEEECCCCCCCccHHHHHHHHHHHCCCcEEEEE
Confidence 44543 4779999999999999999998776
No 268
>cd04918 ACT_AK1-AT_2 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the second of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine (SAM). This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. In its inactive state, Arabidopsis AK1 binds the effectors lysine and SAM (two molecules each) at the interface of two ACT1 domain subunits. The second ACT domain (ACT2), this CD, does not interact with an effector. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=63.19 E-value=51 Score=23.33 Aligned_cols=35 Identities=17% Similarity=0.100 Sum_probs=27.0
Q ss_pred EEEEEeC--CCccHHHHHHHHHHHCCceEEEEEEEEe
Q 022480 104 IVQLSFG--DRLGALIDTMNALKDLGLDVAKGTVNTE 138 (296)
Q Consensus 104 ~V~V~~~--DrpGLLa~i~~vL~~~glnI~~A~I~T~ 138 (296)
.|.++|. ..+|+++++..+|.+.|++|......+.
T Consensus 3 ~VsvVG~~~~~~~~~~~i~~aL~~~~I~v~~i~~g~s 39 (65)
T cd04918 3 IISLIGNVQRSSLILERAFHVLYTKGVNVQMISQGAS 39 (65)
T ss_pred EEEEECCCCCCccHHHHHHHHHHHCCCCEEEEEecCc
Confidence 4556654 4689999999999999999976555444
No 269
>cd04935 ACT_AKiii-DAPDC_1 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. This CD includes the first of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=62.87 E-value=60 Score=24.00 Aligned_cols=57 Identities=16% Similarity=0.224 Sum_probs=37.2
Q ss_pred eCCCccHHHHHHHHHHHCCceEEEEEEEEeCCeEEEEEEEeecCCCCCCCChHHHHHHHHHHHH
Q 022480 109 FGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIIN 172 (296)
Q Consensus 109 ~~DrpGLLa~i~~vL~~~glnI~~A~I~T~~~~~~d~F~V~~~~~g~~l~~~~~l~~L~~~L~~ 172 (296)
.++.+|+++++.++|+++|+||..-. + ++ .--.|.|... ...+.+ +.++.|.+.|+.
T Consensus 11 ~~~~~g~~~~IF~~La~~~I~vDmI~--~-s~-~~isftv~~~--~~~~~~-~~~~~l~~el~~ 67 (75)
T cd04935 11 MWQQVGFLADVFAPFKKHGVSVDLVS--T-SE-TNVTVSLDPD--PNGLDP-DVLDALLDDLNQ 67 (75)
T ss_pred CCCccCHHHHHHHHHHHcCCcEEEEE--e-CC-CEEEEEEeCc--ccccch-HHHHHHHHHHHh
Confidence 46889999999999999999998653 2 22 2123666542 211322 466677777665
No 270
>PRK00092 ribosome maturation protein RimP; Reviewed
Probab=61.38 E-value=1e+02 Score=26.13 Aligned_cols=57 Identities=19% Similarity=0.223 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHCCceEEEEEEEEeCCeEEEEEEEeecCCCCCCCChHHHHHHHHHHHHhhc
Q 022480 115 ALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLL 175 (296)
Q Consensus 115 LLa~i~~vL~~~glnI~~A~I~T~~~~~~d~F~V~~~~~g~~l~~~~~l~~L~~~L~~~L~ 175 (296)
+-..+..++..+|+.+.+..+...++...-..+|.. ++| + +=+.++.+-+.|...|+
T Consensus 9 i~~~~~~~~~~~g~~l~dv~~~~~~~~~~l~V~Id~-~~g--v-~iddc~~~Sr~is~~LD 65 (154)
T PRK00092 9 LTELIEPVVEALGYELVDVEYVKEGRDSTLRIYIDK-EGG--I-DLDDCEEVSRQISAVLD 65 (154)
T ss_pred HHHHHHHHHHHCCCEEEEEEEEecCCCcEEEEEEEC-CCC--C-CHHHHHHHHHHHHHHhc
Confidence 445667889999999999999988775543344543 245 3 23778888888877775
No 271
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=61.34 E-value=8.1 Score=38.13 Aligned_cols=36 Identities=31% Similarity=0.445 Sum_probs=33.1
Q ss_pred EEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecC
Q 022480 219 LLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEG 254 (296)
Q Consensus 219 vleV~t~DRPGLL~dIt~~La~~gv~I~~AkI~T~G 254 (296)
.|+|.|.||-||..++...|...+||+...+|+..|
T Consensus 2 RleV~cedRlGltrelLdlLv~r~idl~~iEid~~~ 37 (511)
T COG3283 2 RLEVFCEDRLGLTRELLDLLVLRGIDLRGIEIDPIG 37 (511)
T ss_pred ceEEEehhhhchHHHHHHHHHhcccCccceeecCCC
Confidence 478999999999999999999999999999996654
No 272
>cd04916 ACT_AKiii-YclM-BS_2 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. B. subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from B. subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=60.69 E-value=52 Score=22.60 Aligned_cols=33 Identities=12% Similarity=0.200 Sum_probs=26.7
Q ss_pred EEEEEeC---CCccHHHHHHHHHHHCCceEEEEEEE
Q 022480 104 IVQLSFG---DRLGALIDTMNALKDLGLDVAKGTVN 136 (296)
Q Consensus 104 ~V~V~~~---DrpGLLa~i~~vL~~~glnI~~A~I~ 136 (296)
.|.+.|. +++|+++++...|.+.|+++.-....
T Consensus 3 lisivg~~~~~~~~~~~~i~~~L~~~~i~v~~i~~~ 38 (66)
T cd04916 3 LIMVVGEGMKNTVGVSARATAALAKAGINIRMINQG 38 (66)
T ss_pred EEEEEcCCCCCCccHHHHHHHHHHHCCCCEEEEEec
Confidence 4566664 78999999999999999999766543
No 273
>cd04892 ACT_AK-like_2 ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the second of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). The exception in this group, is the inclusion of the first ACT domain of the bifunctional aspartokinase - homoserine dehydrogenase-like enzyme group (ACT_AKi-HSDH-ThrA-like_1) which includes the monofunctional, threonine-sensitive, aspartokinase found in Methanococcus jannaschii and other related archaeal species. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. AK is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of AK with different repressors an
Probab=60.59 E-value=48 Score=22.11 Aligned_cols=32 Identities=16% Similarity=0.230 Sum_probs=25.9
Q ss_pred EEEEEeC---CCccHHHHHHHHHHHCCceEEEEEE
Q 022480 104 IVQLSFG---DRLGALIDTMNALKDLGLDVAKGTV 135 (296)
Q Consensus 104 ~V~V~~~---DrpGLLa~i~~vL~~~glnI~~A~I 135 (296)
.|++.+. +++|+++++...|.+.++++..-..
T Consensus 2 ~i~i~g~~~~~~~~~~~~i~~~l~~~~i~v~~i~~ 36 (65)
T cd04892 2 LVSVVGAGMRGTPGVAARIFSALAEAGINIIMISQ 36 (65)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCcEEEEEc
Confidence 4566554 8899999999999999999976544
No 274
>cd04932 ACT_AKiii-LysC-EC_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=60.41 E-value=15 Score=27.29 Aligned_cols=30 Identities=20% Similarity=0.194 Sum_probs=25.3
Q ss_pred EEEEE---eCCCccHHHHHHHHHHHCCceEEEE
Q 022480 104 IVQLS---FGDRLGALIDTMNALKDLGLDVAKG 133 (296)
Q Consensus 104 ~V~V~---~~DrpGLLa~i~~vL~~~glnI~~A 133 (296)
.|+|. .++++|+++++..+|+++|+||.--
T Consensus 3 ~ItI~~~~~~~~~g~~~~IF~~La~~~I~VDmI 35 (75)
T cd04932 3 LVTLKSPNMLHAQGFLAKVFGILAKHNISVDLI 35 (75)
T ss_pred EEEEecCCCCCCcCHHHHHHHHHHHcCCcEEEE
Confidence 45552 5788999999999999999999865
No 275
>PLN02317 arogenate dehydratase
Probab=59.83 E-value=65 Score=31.77 Aligned_cols=38 Identities=13% Similarity=0.210 Sum_probs=31.5
Q ss_pred eEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEeC
Q 022480 102 ATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEG 139 (296)
Q Consensus 102 ~t~V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~~ 139 (296)
-|.|.+.-+|+||.|+++-.+|+.+|+|+.+-.-.-..
T Consensus 283 KTSivfsl~~~pG~L~k~L~~Fa~~~INLtkIESRP~~ 320 (382)
T PLN02317 283 KTSIVFSLEEGPGVLFKALAVFALRDINLTKIESRPQR 320 (382)
T ss_pred cEEEEEEcCCCCchHHHHHHHHHHCCCCEEEEEeeecC
Confidence 36677777999999999999999999999876654443
No 276
>cd04915 ACT_AK-Ectoine_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and various other halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinas
Probab=58.96 E-value=64 Score=23.06 Aligned_cols=43 Identities=19% Similarity=0.328 Sum_probs=29.8
Q ss_pred EEEEEeC--CCcchHHHHHHHHHhCCceEEEEEEEecCCeeeeE-EEEE
Q 022480 219 LLYIETA--DRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDK-FHVS 264 (296)
Q Consensus 219 vleV~t~--DRPGLL~dIt~~La~~gv~I~~AkI~T~G~ra~D~-F~V~ 264 (296)
.|.+.+. -+||++.++.++|.+.|+++..... |...... |.|.
T Consensus 4 ~VsvVG~gm~~~gv~~ki~~~L~~~~I~v~~i~~---~~s~~~is~~V~ 49 (66)
T cd04915 4 IVSVIGRDLSTPGVLARGLAALAEAGIEPIAAHQ---SMRNVDVQFVVD 49 (66)
T ss_pred EEEEECCCCCcchHHHHHHHHHHHCCCCEEEEEe---cCCeeEEEEEEE
Confidence 4444443 3789999999999999999987653 4444444 5553
No 277
>PRK14640 hypothetical protein; Provisional
Probab=58.67 E-value=1.1e+02 Score=25.90 Aligned_cols=58 Identities=10% Similarity=0.056 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHCCceEEEEEEEEeCCeEEEEEEEeecCCCCCCCChHHHHHHHHHHHHhhcc
Q 022480 115 ALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLK 176 (296)
Q Consensus 115 LLa~i~~vL~~~glnI~~A~I~T~~~~~~d~F~V~~~~~g~~l~~~~~l~~L~~~L~~~L~~ 176 (296)
+...+..++..+|+.+.+..+...+.+..=..+|.. ++| ++ =+.++.+.+.|..+|+.
T Consensus 8 i~~li~p~~~~~G~el~dve~~~~~~~~~lrV~ID~-~~g--v~-lddC~~vSr~is~~LD~ 65 (152)
T PRK14640 8 LTDLLEAPVVALGFELWGIEFIRAGKHSTLRVYIDG-ENG--VS-VENCAEVSHQVGAIMDV 65 (152)
T ss_pred HHHHHHHHHHhcCCEEEEEEEEecCCCcEEEEEEEC-CCC--CC-HHHHHHHHHHHHHHhcc
Confidence 455677888999999999999887775543444543 255 43 37788888888877753
No 278
>TIGR01270 Trp_5_monoox tryptophan 5-monooxygenase, tetrameric. This model describes tryptophan 5-monooxygenase, a member of the family of tetrameric, biopterin-dependent aromatic amino acid hydroxylases found in metazoans. It is closely related to tetrameric phenylalanine-4-hydroxylase and tyrosine 3-monooxygenase, and more distantly related to the monomeric phenylalanine-4-hydroxylase found in some Gram-negative bacteria.
Probab=58.22 E-value=44 Score=33.74 Aligned_cols=53 Identities=8% Similarity=0.162 Sum_probs=38.8
Q ss_pred CCCCeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEeCCeE-E-EEEEEee
Q 022480 98 SNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVK-Q-TKFFITR 150 (296)
Q Consensus 98 ~~~~~t~V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~~~~~-~-d~F~V~~ 150 (296)
.+.+.+.|.+..+|++|-|+++-++|+.+|+|+.+-.-.-..... . -.|+|.-
T Consensus 27 ~~~~ktSLIFsL~d~pGaL~~vL~vFa~~gINLThIESRPsk~~~~e~Y~FfVD~ 81 (464)
T TIGR01270 27 EGVQRLSIIFSLSNVVGDLSKAIAIFQDRHINILHLESRDSKDGTSKTMDVLVDV 81 (464)
T ss_pred CCCceEEEEEECCCCchHHHHHHHHHHHCCCCEEEEECCcCCCCCCccEEEEEEE
Confidence 344556777777999999999999999999999876554443322 2 3477765
No 279
>PRK00907 hypothetical protein; Provisional
Probab=56.82 E-value=67 Score=25.18 Aligned_cols=64 Identities=6% Similarity=0.036 Sum_probs=44.7
Q ss_pred eEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEe---CCeE-EEEEEEeecCCCCCCCChHHHHHHHHHHHH
Q 022480 102 ATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTE---GSVK-QTKFFITRLDTGRKVEDPDLLERIRLTIIN 172 (296)
Q Consensus 102 ~t~V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~---~~~~-~d~F~V~~~~~g~~l~~~~~l~~L~~~L~~ 172 (296)
.+.+.|.|.+++++...|..++..+.-.....++... ++.+ --++.|.. ++.++++.|-+.|.+
T Consensus 17 ~fpiKVmG~a~~~l~~~V~~vv~~h~p~~~~~~i~~r~Ss~GkY~Svtv~i~a-------ts~eQld~iY~~L~~ 84 (92)
T PRK00907 17 TFELSAMGTAERGLETELPRLLAATGVELLQERISWKHSSSGKYVSVRIGFRA-------ESREQYDAAHQALRD 84 (92)
T ss_pred CCeEEEEEcCchhHHHHHHHHHHHhCCCCCcCcEEeccCCCCEEEEEEEEEEE-------CCHHHHHHHHHHHhh
Confidence 4689999999999999999999999876666666322 2233 24444543 234777777777654
No 280
>PRK14647 hypothetical protein; Provisional
Probab=56.64 E-value=1.3e+02 Score=25.80 Aligned_cols=57 Identities=21% Similarity=0.255 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHCCceEEEEEEEEeCCeEEEEEEEeecCCCCCCCChHHHHHHHHHHHHhhc
Q 022480 115 ALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLL 175 (296)
Q Consensus 115 LLa~i~~vL~~~glnI~~A~I~T~~~~~~d~F~V~~~~~g~~l~~~~~l~~L~~~L~~~L~ 175 (296)
+-..+..++..+|+.+.+..+...+...+-.++|.. +.| ++ =+.++.+.+.|...|+
T Consensus 10 i~~~i~~~~~~~G~~L~dv~~~~~~~~~~lrV~ID~-~~g--vs-lddC~~vSr~is~~LD 66 (159)
T PRK14647 10 VTELAEQVLSSLGLELVELEYKREGREMVLRLFIDK-EGG--VN-LDDCAEVSRELSEILD 66 (159)
T ss_pred HHHHHHHHHHHCCCEEEEEEEEecCCCeEEEEEEeC-CCC--CC-HHHHHHHHHHHHHHHc
Confidence 344567789999999999999988775543444543 245 32 2677888888887775
No 281
>TIGR02079 THD1 threonine dehydratase. This model represents threonine dehydratase, the first step in the pathway converting threonine into isoleucine. At least two other clades of biosynthetic threonine dehydratases have been characterized by models TIGR01124 and TIGR01127. Those sequences described by this model are exclusively found in species containg the rest of the isoleucine pathway and which are generally lacking in members of the those other two clades of threonine dehydratases. Members of this clade are also often gene clustered with other elements of the isoleucine pathway.
Probab=55.95 E-value=88 Score=30.80 Aligned_cols=65 Identities=14% Similarity=0.158 Sum_probs=43.3
Q ss_pred CcEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEE-ecCCeeeeE-EEEEeCCCCCChHHHHHHHHHHHH
Q 022480 216 KRSLLYIETADRPGLLVEIMKIIADVNVDVESAEID-TEGLVAKDK-FHVSYGGAALNSSLSQVLVNCLRY 284 (296)
Q Consensus 216 ~~TvleV~t~DRPGLL~dIt~~La~~gv~I~~AkI~-T~G~ra~D~-F~V~~~g~~L~~~~~~~L~~~L~~ 284 (296)
....+.+.-+||||=|.++++.+...+-||...+-. ..+.....+ +-+.-.+ .++.+++.++|++
T Consensus 324 r~~~~~v~ipdrPGaL~~~l~~i~~~~~NI~~~~y~~~~~~~~~~v~v~iE~~~----~~h~~~i~~~L~~ 390 (409)
T TIGR02079 324 LKHYFIVRFPQRPGALREFLNDVLGPNDDITRFEYTKKSNRETGPALIGIELND----KEDFAGLLERMAA 390 (409)
T ss_pred CEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEeeecCCCCeEEEEEEEEeCC----HHHHHHHHHHHHH
Confidence 368899999999999999999777677799876655 333222222 3332233 3466777777764
No 282
>PRK06635 aspartate kinase; Reviewed
Probab=55.60 E-value=68 Score=31.19 Aligned_cols=34 Identities=18% Similarity=0.213 Sum_probs=28.7
Q ss_pred CCeEEEEEEe---CCCccHHHHHHHHHHHCCceEEEE
Q 022480 100 SDATIVQLSF---GDRLGALIDTMNALKDLGLDVAKG 133 (296)
Q Consensus 100 ~~~t~V~V~~---~DrpGLLa~i~~vL~~~glnI~~A 133 (296)
++...+.|.+ +++||.++++..+|+++|+||...
T Consensus 338 ~~ia~isvvG~~~~~~~g~~a~i~~~La~~~Ini~~i 374 (404)
T PRK06635 338 DDIAKVSVVGVGMRSHPGVAAKMFEALAEEGINIQMI 374 (404)
T ss_pred CCeEEEEEECCCCCCCchHHHHHHHHHHHCCCCEEEE
Confidence 3455678876 699999999999999999999764
No 283
>cd04921 ACT_AKi-HSDH-ThrA-like_1 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the first of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pat
Probab=55.28 E-value=77 Score=22.87 Aligned_cols=33 Identities=15% Similarity=0.145 Sum_probs=26.4
Q ss_pred EEEEEe---CCCccHHHHHHHHHHHCCceEEEEEEE
Q 022480 104 IVQLSF---GDRLGALIDTMNALKDLGLDVAKGTVN 136 (296)
Q Consensus 104 ~V~V~~---~DrpGLLa~i~~vL~~~glnI~~A~I~ 136 (296)
.|++.+ .+.+|+++++.++|++.|+++..-...
T Consensus 3 ~I~vvg~~~~~~~~~~~~i~~~L~~~~I~v~~i~~~ 38 (80)
T cd04921 3 LINIEGTGMVGVPGIAARIFSALARAGINVILISQA 38 (80)
T ss_pred EEEEEcCCCCCCccHHHHHHHHHHHCCCcEEEEEec
Confidence 456643 478999999999999999999865544
No 284
>PRK14639 hypothetical protein; Provisional
Probab=55.04 E-value=1.3e+02 Score=25.31 Aligned_cols=54 Identities=20% Similarity=0.185 Sum_probs=39.0
Q ss_pred HHHHHHHCCceEEEEEEEEeCCeEEEEEEEeecCCCCCCCChHHHHHHHHHHHHhhcc
Q 022480 119 TMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLK 176 (296)
Q Consensus 119 i~~vL~~~glnI~~A~I~T~~~~~~d~F~V~~~~~g~~l~~~~~l~~L~~~L~~~L~~ 176 (296)
+..++..+|+.+.+..+...++..+=.++|... .| ++ =+.++++.+.|...|+.
T Consensus 3 ~ep~~~~~G~eLvdve~~~~~~~~~lrV~Id~~-~g--v~-iddC~~vSr~is~~LD~ 56 (140)
T PRK14639 3 LEALCKECGVSFYDDELVSENGRKIYRVYITKE-GG--VN-LDDCERLSELLSPIFDV 56 (140)
T ss_pred hhHhHHhCCCEEEEEEEEecCCCcEEEEEEeCC-CC--CC-HHHHHHHHHHHHHHhcc
Confidence 456788999999999999888766444555442 45 43 37788888888887763
No 285
>PTZ00324 glutamate dehydrogenase 2; Provisional
Probab=54.55 E-value=82 Score=34.91 Aligned_cols=63 Identities=11% Similarity=-0.022 Sum_probs=49.0
Q ss_pred CcEEEEeecCC-CCeEEEEE---EeCCCccHHHHHHHHHHHCCceEEEEEEEEeCCeE-EEEEEEeec
Q 022480 89 MPHVLIDQDSN-SDATIVQL---SFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVK-QTKFFITRL 151 (296)
Q Consensus 89 ~p~V~i~~~~~-~~~t~V~V---~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~~~~~-~d~F~V~~~ 151 (296)
.|.+.+..... .....+.+ ..+-..|+|..++.++..+||.+..+.+-+..++. +-+|+|...
T Consensus 216 g~~i~~~~~~~~~~~~r~~~a~~r~~~~~~~~s~~~~~~~~~~l~~~R~Y~e~fsngv~i~s~yv~~~ 283 (1002)
T PTZ00324 216 GPVLHVNEVPRGGVSFTMAMAFRRRYYTASFFSRFGEIVTFHGAYSMSKYVEPFSNGVQVYTFFIRGL 283 (1002)
T ss_pred CCeEEEEecCCCCcEEEEEEEEecCCcHhhHHHHHHHHHHhcCCccceEEEEEeeCCcEEEEEEEecC
Confidence 37887775552 23334444 34667789999999999999999999999998886 578999985
No 286
>COG4492 PheB ACT domain-containing protein [General function prediction only]
Probab=54.51 E-value=23 Score=29.89 Aligned_cols=49 Identities=18% Similarity=0.268 Sum_probs=39.1
Q ss_pred CcEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEE-ecCCeeeeEEEEE
Q 022480 216 KRSLLYIETADRPGLLVEIMKIIADVNVDVESAEID-TEGLVAKDKFHVS 264 (296)
Q Consensus 216 ~~TvleV~t~DRPGLL~dIt~~La~~gv~I~~AkI~-T~G~ra~D~F~V~ 264 (296)
+-..+.+.-.||.|.|+++..++++.++||...+=+ ...++|.-...+.
T Consensus 71 ri~TL~l~ledr~G~LS~vLd~iA~~~~nvLTI~Q~ipl~g~Anvtlsi~ 120 (150)
T COG4492 71 RIITLSLSLEDRVGILSDVLDVIAREEINVLTIHQTIPLQGRANVTLSID 120 (150)
T ss_pred eEEEEEEEEhhhhhhHHHHHHHHHHhCCcEEEEecccccCceeeEEEEEE
Confidence 468888999999999999999999999999876643 2456666666553
No 287
>PRK11898 prephenate dehydratase; Provisional
Probab=54.48 E-value=1e+02 Score=28.92 Aligned_cols=52 Identities=19% Similarity=0.263 Sum_probs=37.0
Q ss_pred eEEEEEEeCC-CccHHHHHHHHHHHCCceEEEEEEEEeCCe-EEEEEEEeecCCCC
Q 022480 102 ATIVQLSFGD-RLGALIDTMNALKDLGLDVAKGTVNTEGSV-KQTKFFITRLDTGR 155 (296)
Q Consensus 102 ~t~V~V~~~D-rpGLLa~i~~vL~~~glnI~~A~I~T~~~~-~~d~F~V~~~~~g~ 155 (296)
.+.+.+..++ +||.|+++-++|+.+|+|+.+-.-.-..+. +.-.|+|.- +|.
T Consensus 196 ktslif~l~~~~pGsL~~~L~~F~~~~INLt~IeSRP~~~~~~~y~F~vd~--eg~ 249 (283)
T PRK11898 196 KTSLVLTLPNNLPGALYKALSEFAWRGINLTRIESRPTKTGLGTYFFFIDV--EGH 249 (283)
T ss_pred eEEEEEEeCCCCccHHHHHHHHHHHCCCCeeeEecccCCCCCccEEEEEEE--Ecc
Confidence 3556666655 699999999999999999987666554432 234477766 464
No 288
>PRK02047 hypothetical protein; Provisional
Probab=54.17 E-value=75 Score=24.67 Aligned_cols=67 Identities=7% Similarity=-0.028 Sum_probs=44.7
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEeC--CeEEEEEEEeecCCCCCCCChHHHHHHHHHHHH
Q 022480 101 DATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEG--SVKQTKFFITRLDTGRKVEDPDLLERIRLTIIN 172 (296)
Q Consensus 101 ~~t~V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~~--~~~~d~F~V~~~~~g~~l~~~~~l~~L~~~L~~ 172 (296)
-.+.+.|.+++.+++...+..++..+...+..+.+.+.. +|..-.+.|.-. +.+++++..|-+.|.+
T Consensus 15 c~~~~KvIG~~~~~~~~~v~~iv~~~~~~~~~~~i~~k~Ss~GkY~Svtv~v~-----v~s~eq~~~iY~~L~~ 83 (91)
T PRK02047 15 SDFPIKVMGKAHPEFADTIFKVVSVHDPEFDLEKIEERPSSGGNYTGLTITVR-----ATSREQLDNIYRALTG 83 (91)
T ss_pred CCCeEEEEEeCcHhHHHHHHHHHHHhCCCCccCceEEccCCCCeEEEEEEEEE-----ECCHHHHHHHHHHHhh
Confidence 457899999999999999999999997777666664332 233222333221 2345677777766654
No 289
>PRK14633 hypothetical protein; Provisional
Probab=52.68 E-value=1.4e+02 Score=25.25 Aligned_cols=75 Identities=16% Similarity=0.089 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHCCceEEEEEEEEeCCeEEEEEEEeecCCCCCCCChHHHHHHHHHHHHhhcccCCCchhHhhhccccCcc
Q 022480 115 ALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLKYHPESSEQLAMGEAFGIK 194 (296)
Q Consensus 115 LLa~i~~vL~~~glnI~~A~I~T~~~~~~d~F~V~~~~~g~~l~~~~~l~~L~~~L~~~L~~~~~~~~~~La~~~~~~~~ 194 (296)
+-..+..++..+|+.+.+..+...+.+.+-+|.=.+ +|-.+ +.++.+.+.|...|+.
T Consensus 6 i~~lv~p~~~~~G~eL~dve~~~~~~~~lrV~ID~~--~Gv~l---ddC~~vSr~i~~~LD~------------------ 62 (150)
T PRK14633 6 LYEIVEPITADLGYILWGIEVVGSGKLTIRIFIDHE--NGVSV---DDCQIVSKEISAVFDV------------------ 62 (150)
T ss_pred HHHHHHHHHHHCCCEEEEEEEEeCCCcEEEEEEeCC--CCCCH---HHHHHHHHHHHHHhcc------------------
Q ss_pred CCCccccccccceeeeccCCCCcEEEEEEeC--CCc
Q 022480 195 APEKKLDVDIATHIHVKEDGPKRSLLYIETA--DRP 228 (296)
Q Consensus 195 ~~~r~~~~~~~~~V~v~~~~~~~TvleV~t~--DRP 228 (296)
.+.-+..|.|||+++ |||
T Consensus 63 ----------------~d~i~~~Y~LEVSSPGldRp 82 (150)
T PRK14633 63 ----------------EDPVSGKYILEVSSPGMNRQ 82 (150)
T ss_pred ----------------CcCCCCCeEEEEeCCCCCCC
No 290
>PRK14638 hypothetical protein; Provisional
Probab=52.01 E-value=1.5e+02 Score=25.20 Aligned_cols=59 Identities=15% Similarity=0.063 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHCCceEEEEEEEEeCCeEEEEEEEeecCCCCCCCChHHHHHHHHHHHHhhcc
Q 022480 115 ALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLK 176 (296)
Q Consensus 115 LLa~i~~vL~~~glnI~~A~I~T~~~~~~d~F~V~~~~~g~~l~~~~~l~~L~~~L~~~L~~ 176 (296)
+-..+..++..+|+.+.+..+...+.+.+=..+|... +|. ++ =+.++.+.+.|..+|+.
T Consensus 10 i~~~~~~i~~~~G~elvdve~~~~~~~~~lrV~ID~~-~G~-v~-lddC~~vSr~is~~LD~ 68 (150)
T PRK14638 10 VRKEAERIAEEQGLEIFDVQYRRESRGWVLRIIIDNP-VGY-VS-VRDCELFSREIERFLDR 68 (150)
T ss_pred HHHHHHHHHHHcCCEEEEEEEEecCCCcEEEEEEECC-CCC-cC-HHHHHHHHHHHHHHhcc
Confidence 4456677889999999999999887765434555442 452 33 37788888888887763
No 291
>TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases.
Probab=50.76 E-value=94 Score=30.18 Aligned_cols=33 Identities=12% Similarity=0.183 Sum_probs=28.2
Q ss_pred CCeEEEEEEeC---CCccHHHHHHHHHHHCCceEEE
Q 022480 100 SDATIVQLSFG---DRLGALIDTMNALKDLGLDVAK 132 (296)
Q Consensus 100 ~~~t~V~V~~~---DrpGLLa~i~~vL~~~glnI~~ 132 (296)
.+...|.|.|. ++||+++++..+|.+.|+||..
T Consensus 335 ~~~a~IsvVG~~~~~~~g~~a~i~~~L~~~gIni~~ 370 (401)
T TIGR00656 335 EGLAKVSIVGAGMVGAPGVASEIFSALEEKNINILM 370 (401)
T ss_pred CCeEEEEEECCCcccCccHHHHHHHHHHHCCCcEEE
Confidence 45566778874 7999999999999999999984
No 292
>cd04914 ACT_AKi-DapG-BS_1 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria, bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The B. subtilis AKI is tetrameric consisting of two alpha and
Probab=50.38 E-value=38 Score=24.37 Aligned_cols=30 Identities=13% Similarity=0.318 Sum_probs=24.9
Q ss_pred EEEEEeC-CCcchHHHHHHHHHhCCceEEEE
Q 022480 219 LLYIETA-DRPGLLVEIMKIIADVNVDVESA 248 (296)
Q Consensus 219 vleV~t~-DRPGLL~dIt~~La~~gv~I~~A 248 (296)
.|.|.+. +.||.+++|.+.|+++|++|...
T Consensus 3 ~vtv~~~~~~~~~~a~if~~La~~~InvDmI 33 (67)
T cd04914 3 QIKVKAKDNENDLQQRVFKALANAGISVDLI 33 (67)
T ss_pred EEEEecCCCCccHHHHHHHHHHHcCCcEEEE
Confidence 3444433 56999999999999999999999
No 293
>cd04920 ACT_AKiii-DAPDC_2 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC). This CD includes the second of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=50.12 E-value=88 Score=22.04 Aligned_cols=41 Identities=12% Similarity=0.064 Sum_probs=27.6
Q ss_pred EEEEEeC---CCcchHHHHHHHHHhCCceEEEEEEEecCCeeeeE-EEEE
Q 022480 219 LLYIETA---DRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDK-FHVS 264 (296)
Q Consensus 219 vleV~t~---DRPGLL~dIt~~La~~gv~I~~AkI~T~G~ra~D~-F~V~ 264 (296)
.|.+.+. +.||+++++.++|.+.|+++.+ .|.....+ |.|.
T Consensus 2 ~VsvVG~g~~~~~gv~~~~~~~L~~~~i~~i~-----~~~s~~~is~vv~ 46 (63)
T cd04920 2 AVSLVGRGIRSLLHKLGPALEVFGKKPVHLVS-----QAANDLNLTFVVD 46 (63)
T ss_pred EEEEECCCcccCccHHHHHHHHHhcCCceEEE-----EeCCCCeEEEEEe
Confidence 3455554 7899999999999998766622 34444454 6663
No 294
>PF05088 Bac_GDH: Bacterial NAD-glutamate dehydrogenase
Probab=48.88 E-value=1.1e+02 Score=35.45 Aligned_cols=199 Identities=16% Similarity=0.173 Sum_probs=106.0
Q ss_pred CCcEEEEeecCCCCeEEEEEEeC-CCc--cHHHHHHHHHHHC-CceEEEEEEEEeCCe-EEEEEEEeecCCCCCCCChHH
Q 022480 88 PMPHVLIDQDSNSDATIVQLSFG-DRL--GALIDTMNALKDL-GLDVAKGTVNTEGSV-KQTKFFITRLDTGRKVEDPDL 162 (296)
Q Consensus 88 ~~p~V~i~~~~~~~~t~V~V~~~-Drp--GLLa~i~~vL~~~-glnI~~A~I~T~~~~-~~d~F~V~~~~~g~~l~~~~~ 162 (296)
+...+-++......+.-+.|+.| ||- .+-.+|..+|.+. +....+-......+. +---|++... .+.... -.
T Consensus 327 ~rvRlf~R~D~~grfvs~LVyvPrd~y~t~~r~~i~~~l~~~~~~~~~~~~~~~~e~~lar~~~~~~~~-~~~~~~--~d 403 (1528)
T PF05088_consen 327 RRVRLFLRRDPFGRFVSCLVYVPRDRYNTELRERIQDILMEAFGGTSSEFYTYFSESPLARVHFIIRVD-PGHEPD--ID 403 (1528)
T ss_pred CceeEEEEEcCCCCEEEEEEEEehhhCCHHHHHHHHHHHHHHhCCEEEEEEEEecCCceEEEEEEEEeC-CCCCCC--CC
Confidence 44556667777777776666654 443 3677888887654 444444444333332 2234666553 444321 12
Q ss_pred HHHHHHHHHHhhcccCCCchhHhh------------hc--cccC-----ccCCCcc-cc------c--cccceeeeccCC
Q 022480 163 LERIRLTIINNLLKYHPESSEQLA------------MG--EAFG-----IKAPEKK-LD------V--DIATHIHVKEDG 214 (296)
Q Consensus 163 l~~L~~~L~~~L~~~~~~~~~~La------------~~--~~~~-----~~~~~r~-~~------~--~~~~~V~v~~~~ 214 (296)
.++|++.|.++...+...+...+. .. ..+. .-.+.+. .+ . .-+..+.+....
T Consensus 404 ~~~le~~l~~~~r~W~d~l~~~l~~~~g~~~~~~l~~~y~~aFp~~Yre~f~p~~Av~Di~~le~l~~~~~~~~~l~~~~ 483 (1528)
T PF05088_consen 404 VEALEARLAEATRSWEDRLREALVERYGEEQGARLFQRYANAFPASYREDFSPEEAVRDIERLESLSGEGPLAVDLYRPA 483 (1528)
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHhcChhhhHHHHHHHHHhCCHHHHhhCCchhHHHHHHHHHhhcCCCCceEEEeccC
Confidence 245555555533321111110000 00 0000 0000000 00 0 112333433221
Q ss_pred ---CCcEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEE---ec-C-CeeeeEEEEEe-CCCCCChH-HHHHHHHHHHH
Q 022480 215 ---PKRSLLYIETADRPGLLVEIMKIIADVNVDVESAEID---TE-G-LVAKDKFHVSY-GGAALNSS-LSQVLVNCLRY 284 (296)
Q Consensus 215 ---~~~TvleV~t~DRPGLL~dIt~~La~~gv~I~~AkI~---T~-G-~ra~D~F~V~~-~g~~L~~~-~~~~L~~~L~~ 284 (296)
+....+.|....+|..|++|.-+|..+|+.|..-.-. .. | ..-...|++.. .+..+... ..+.+++++.+
T Consensus 484 ~~~~~~~~lkiy~~~~~~~Ls~vlPilenlGl~V~~e~~~~i~~~~~~~~~i~~F~l~~~~~~~~~~~~~~~~~~~a~~~ 563 (1528)
T PF05088_consen 484 GAGPGRLRLKIYHPGEPLPLSDVLPILENLGLRVIDERPYEIRRADGRRVWIHDFGLQYPDGDALDLDDIRERFEEAFEA 563 (1528)
T ss_pred CCCCCeEEEEEEcCCCCcCHHHHHHHHHhCCCEEEEEecceeecCCCceEEEEEEEEecCCCccccHHHHHHHHHHHHHH
Confidence 3478999999999999999999999999999877543 32 2 22555688876 55555544 66788888877
Q ss_pred HcCCC
Q 022480 285 YLRRP 289 (296)
Q Consensus 285 ~l~~~ 289 (296)
.....
T Consensus 564 v~~g~ 568 (1528)
T PF05088_consen 564 VWNGR 568 (1528)
T ss_pred HhcCC
Confidence 65443
No 295
>TIGR01268 Phe4hydrox_tetr phenylalanine-4-hydroxylase, tetrameric form. The member of this family from Drosophila has been described as having both phenylalanine-4-hydroxylase and tryptophan 5-monoxygenase activity (PubMed:1371286). However, a Drosophila member of the tryptophan 5-monoxygenase clade has subsequently been discovered.
Probab=48.63 E-value=1.1e+02 Score=30.65 Aligned_cols=52 Identities=15% Similarity=0.265 Sum_probs=38.2
Q ss_pred eEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEeCCe-EEEEEEEeecCCCC
Q 022480 102 ATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSV-KQTKFFITRLDTGR 155 (296)
Q Consensus 102 ~t~V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~~~~-~~d~F~V~~~~~g~ 155 (296)
.+.|.+..+|+||-|+++-++|+.+|+|+.+-.-.-.... ..-.|+|.- +|.
T Consensus 16 KTSLiFsL~d~pGaL~~vL~vFa~~gINLthIESRPsk~~~~eY~FFVD~--eg~ 68 (436)
T TIGR01268 16 KTSLIFSLKEEAGALAETLKLFQAHDVNLTHIESRPSKTHPGEYEFFVEF--DEA 68 (436)
T ss_pred eEEEEEEcCCCCcHHHHHHHHHHHCCCCeeEEecccCCCCCccEEEEEEE--ecC
Confidence 4677777799999999999999999999987555444332 223477776 454
No 296
>PRK14646 hypothetical protein; Provisional
Probab=48.40 E-value=1.7e+02 Score=24.93 Aligned_cols=62 Identities=11% Similarity=0.089 Sum_probs=47.8
Q ss_pred hHHHHHHHHHhCCceEEEEEEEecCCeeeeEEEEEe-CCCCCChHHHHHHHHHHHHHcCCCCC
Q 022480 230 LLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSY-GGAALNSSLSQVLVNCLRYYLRRPET 291 (296)
Q Consensus 230 LL~dIt~~La~~gv~I~~AkI~T~G~ra~D~F~V~~-~g~~L~~~~~~~L~~~L~~~l~~~~~ 291 (296)
+..-+..++..+|+.+...++...|....=..||.. +|..++=+.|+.+...|-.+|+...-
T Consensus 9 i~~li~p~~~~~G~eLvdve~~~~~~~~~LrV~IDk~~g~gVtldDC~~vSr~is~~LD~~D~ 71 (155)
T PRK14646 9 LEILLEKVANEFDLKICSLNIQTNQNPIVIKIIIKKTNGDDISLDDCALFNTPASEEIENSNL 71 (155)
T ss_pred HHHHHHHHHHHcCCEEEEEEEEeCCCCeEEEEEEECCCCCCccHHHHHHHHHHHHHHhCcCCC
Confidence 455677889999999999999988766544666654 45567767899999999999985433
No 297
>PRK12483 threonine dehydratase; Reviewed
Probab=46.62 E-value=1.1e+02 Score=31.33 Aligned_cols=62 Identities=10% Similarity=0.123 Sum_probs=40.3
Q ss_pred cEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCeeeeEEEE-EeCCCCCChHHH-HHHHHHHHH
Q 022480 217 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHV-SYGGAALNSSLS-QVLVNCLRY 284 (296)
Q Consensus 217 ~TvleV~t~DRPGLL~dIt~~La~~gv~I~~AkI~T~G~ra~D~F~V-~~~g~~L~~~~~-~~L~~~L~~ 284 (296)
...+.|.-+||||-|.+++++|... ||...+-...+.+-..++.. .-.+. ++. ++|.++|++
T Consensus 345 ~~~~~v~~~d~pG~l~~~~~~l~~~--ni~~~~~~~~~~~~~~v~v~ie~~~~----~~~~~~i~~~l~~ 408 (521)
T PRK12483 345 EAIIAVTIPEQPGSFKAFCAALGKR--QITEFNYRYADAREAHLFVGVQTHPR----HDPRAQLLASLRA 408 (521)
T ss_pred EEEEEEEeCCCCCHHHHHHHHhhhc--CeEEEEEEecCCCeeEEEEEEEeCCh----hhhHHHHHHHHHH
Confidence 6788999999999999999999988 77666555444333333333 22332 233 566666653
No 298
>cd04936 ACT_AKii-LysC-BS-like_2 ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis strain 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive AK isoenzymes. The B. subtilis strain 168 AKII is induced by methionine and repressed and inhibited by lysine. Although C. glutamicum is known to contain a single AK, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regu
Probab=46.07 E-value=90 Score=20.95 Aligned_cols=30 Identities=17% Similarity=0.256 Sum_probs=24.6
Q ss_pred EEEEe---CCCccHHHHHHHHHHHCCceEEEEE
Q 022480 105 VQLSF---GDRLGALIDTMNALKDLGLDVAKGT 134 (296)
Q Consensus 105 V~V~~---~DrpGLLa~i~~vL~~~glnI~~A~ 134 (296)
|+|.+ .+.+|++.++.+.|.+.|+++..-.
T Consensus 3 i~v~g~~~~~~~~~~~~i~~~L~~~~i~v~~i~ 35 (63)
T cd04936 3 VSIVGAGMRSHPGVAAKMFEALAEAGINIEMIS 35 (63)
T ss_pred EEEECCCCCCCccHHHHHHHHHHHCCCcEEEEE
Confidence 45554 5779999999999999999996654
No 299
>PRK14632 hypothetical protein; Provisional
Probab=45.81 E-value=2e+02 Score=24.97 Aligned_cols=75 Identities=16% Similarity=0.169 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHCCceEEEEEEEEeCCeEEEEEEEeecCCCCCCCChHHHHHHHHHHHHhhcccCCCchhHhhhccccCcc
Q 022480 115 ALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLKYHPESSEQLAMGEAFGIK 194 (296)
Q Consensus 115 LLa~i~~vL~~~glnI~~A~I~T~~~~~~d~F~V~~~~~g~~l~~~~~l~~L~~~L~~~L~~~~~~~~~~La~~~~~~~~ 194 (296)
+-..+..++..+|+.+.+..+.. +...+=..+|... .|-.+ +.++.+.+.|..+|+.
T Consensus 10 i~~li~pv~~~~G~eLvdve~~~-~~~~~lrV~ID~~-~GV~l---dDC~~vSr~is~~LD~------------------ 66 (172)
T PRK14632 10 IADMAGPFLASLGLELWGIELSY-GGRTVVRLFVDGP-EGVTI---DQCAEVSRHVGLALEV------------------ 66 (172)
T ss_pred HHHHHHHHHHHCCCEEEEEEEEe-CCCcEEEEEEECC-CCCCH---HHHHHHHHHHHHHhcc------------------
Q ss_pred CCCccccccccceeeeccCCCCcEEEEEEeC--CCc
Q 022480 195 APEKKLDVDIATHIHVKEDGPKRSLLYIETA--DRP 228 (296)
Q Consensus 195 ~~~r~~~~~~~~~V~v~~~~~~~TvleV~t~--DRP 228 (296)
.+.-+..|.|||+++ |||
T Consensus 67 ----------------~d~i~~~Y~LEVSSPGldRp 86 (172)
T PRK14632 67 ----------------EDVISSAYVLEVSSPGLERP 86 (172)
T ss_pred ----------------cccCCCCeEEEEeCCCCCCc
No 300
>PRK08210 aspartate kinase I; Reviewed
Probab=45.51 E-value=1.1e+02 Score=29.85 Aligned_cols=33 Identities=15% Similarity=0.310 Sum_probs=28.0
Q ss_pred CCeEEEEEEeC---CCccHHHHHHHHHHHCCceEEE
Q 022480 100 SDATIVQLSFG---DRLGALIDTMNALKDLGLDVAK 132 (296)
Q Consensus 100 ~~~t~V~V~~~---DrpGLLa~i~~vL~~~glnI~~ 132 (296)
++...|.|.|. +++|+++++..+|.+.|+||..
T Consensus 337 ~~~a~isvvG~~~~~~~g~~~~i~~aL~~~~I~i~~ 372 (403)
T PRK08210 337 ENCAKVSIVGAGMAGVPGVMAKIVTALSEEGIEILQ 372 (403)
T ss_pred CCcEEEEEEcCCcCCCccHHHHHHHHHHhCCCCEEE
Confidence 45567777775 7999999999999999999974
No 301
>PRK08639 threonine dehydratase; Validated
Probab=45.41 E-value=1.2e+02 Score=30.04 Aligned_cols=65 Identities=14% Similarity=0.100 Sum_probs=41.7
Q ss_pred CcEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEe-cCCeeeeEEEEEe-CCCCCChHHHHHHHHHHHH
Q 022480 216 KRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDT-EGLVAKDKFHVSY-GGAALNSSLSQVLVNCLRY 284 (296)
Q Consensus 216 ~~TvleV~t~DRPGLL~dIt~~La~~gv~I~~AkI~T-~G~ra~D~F~V~~-~g~~L~~~~~~~L~~~L~~ 284 (296)
....+.+.-+||||-|.++.+.+...+-||...+-.- .+.....++..-. .| .++.+++.+.|.+
T Consensus 335 r~~~~~v~ipdrPGaL~~~l~~i~~~~~NI~~~~~~~~~~~~~~~v~v~iE~~~----~~h~~~i~~~L~~ 401 (420)
T PRK08639 335 LKHYFIVNFPQRPGALREFLDDVLGPNDDITRFEYLKKNNRETGPVLVGIELKD----AEDYDGLIERMEA 401 (420)
T ss_pred CEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEEeecCCCCceEEEEEEEeCC----HHHHHHHHHHHHH
Confidence 3688999999999999999996666665888776542 2222222222112 33 2366777777764
No 302
>PRK00341 hypothetical protein; Provisional
Probab=44.62 E-value=1.2e+02 Score=23.52 Aligned_cols=63 Identities=17% Similarity=0.166 Sum_probs=42.7
Q ss_pred eEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEe--CCeE-E-EEEEEeecCCCCCCCChHHHHHHHHHHHH
Q 022480 102 ATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTE--GSVK-Q-TKFFITRLDTGRKVEDPDLLERIRLTIIN 172 (296)
Q Consensus 102 ~t~V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~--~~~~-~-d~F~V~~~~~g~~l~~~~~l~~L~~~L~~ 172 (296)
.+.+.|.|.+.+++...|..++..+. ......+.+. .+|. . -++.|.- .+++++..|-+.|.+
T Consensus 17 ~~~~KViG~~~~~~~~~V~~iv~~~~-~~~~~~~~~k~Ss~GkY~S~tv~i~~-------~s~~q~~~iy~~L~~ 83 (91)
T PRK00341 17 DYPIKVIGDTGVGFKDLVIEILQKHA-DVDLSTLAERQSSNGKYTTVQLHIVA-------TDEDQLQDINSALRA 83 (91)
T ss_pred CccEEEEEcCchhHHHHHHHHHHHhC-CCcccceeeccCCCCEEEEEEEEEEE-------CCHHHHHHHHHHHhh
Confidence 37899999999999999999998886 6666655422 2233 2 3333433 234677777777654
No 303
>PRK14630 hypothetical protein; Provisional
Probab=44.47 E-value=1.9e+02 Score=24.33 Aligned_cols=82 Identities=16% Similarity=0.082 Sum_probs=0.0
Q ss_pred EEeCCCccHHHHHHHHHHHCCceEEEEEEEEeCCeEEEEEEEeecCCCCCCCChHHHHHHHHHHHHhhcccCCCchhHhh
Q 022480 107 LSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLKYHPESSEQLA 186 (296)
Q Consensus 107 V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~~~~~~d~F~V~~~~~g~~l~~~~~l~~L~~~L~~~L~~~~~~~~~~La 186 (296)
|.--|..-+-..+..++..+|+.+.+......++...=.++|... +|-.+ +.++.+.+.|...|
T Consensus 2 ~~~~~~~~i~~li~~~~~~~G~eLvdve~~~~~~~~~lrV~Id~~-~gV~i---dDC~~vSr~i~~~l------------ 65 (143)
T PRK14630 2 VKIFDNSEVYNLIKNVTDRLGIEIIEINTFRNRNEGKIQIVLYKK-DSFGV---DTLCDLHKMILLIL------------ 65 (143)
T ss_pred eeeccHHHHHHHHHHHHHHcCCEEEEEEEEecCCCcEEEEEEECC-CCCCH---HHHHHHHHHHHHHh------------
Q ss_pred hccccCccCCCccccccccceeeeccCCCCcEEEEEEeC--CCc
Q 022480 187 MGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIETA--DRP 228 (296)
Q Consensus 187 ~~~~~~~~~~~r~~~~~~~~~V~v~~~~~~~TvleV~t~--DRP 228 (296)
++.-+..|.|||+++ |||
T Consensus 66 ------------------------d~~i~~~Y~LEVSSPGldRp 85 (143)
T PRK14630 66 ------------------------EAVLKYNFSLEISTPGINRK 85 (143)
T ss_pred ------------------------cccCCCCeEEEEeCCCCCCc
No 304
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=43.71 E-value=37 Score=34.57 Aligned_cols=35 Identities=17% Similarity=0.202 Sum_probs=32.2
Q ss_pred EEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEe
Q 022480 104 IVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTE 138 (296)
Q Consensus 104 ~V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~ 138 (296)
.+.|.|.||.|+..++...|..+++|+..-.|...
T Consensus 2 rl~~~~~dr~g~~~~~l~~~~~~~~~~~~~e~~~~ 36 (520)
T PRK10820 2 RLEVFCEDRLGLTRELLDLLVLRSIDLRGIEIDPI 36 (520)
T ss_pred eEEEEeeccccHHHHHHHHHHhcCCCccEEEEcCC
Confidence 47899999999999999999999999999998555
No 305
>KOG0456 consensus Aspartate kinase [Amino acid transport and metabolism]
Probab=42.76 E-value=1.9e+02 Score=28.94 Aligned_cols=111 Identities=18% Similarity=0.266 Sum_probs=61.5
Q ss_pred CCccHHHHHHHHHHHCCceEEEEEEEEeCCeEEEEEEEeecCCCCCCCChHHHHHHHHHHHHhhcccCCCchhHhhhccc
Q 022480 111 DRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLKYHPESSEQLAMGEA 190 (296)
Q Consensus 111 DrpGLLa~i~~vL~~~glnI~~A~I~T~~~~~~d~F~V~~~~~g~~l~~~~~l~~L~~~L~~~L~~~~~~~~~~La~~~~ 190 (296)
-+.|.|+++..+|.++|+.|- +.++.+--+ .. -.++ .++ +..+.|++.|.++... -+.++ .
T Consensus 405 ~q~GFLAkvFti~ek~~isVD---vvaTSEV~i-Sl-tL~~---~~~---~sreliq~~l~~a~ee-----L~ki~---~ 465 (559)
T KOG0456|consen 405 GQHGFLAKVFTIFEKLGISVD---VVATSEVSI-SL-TLDP---SKL---DSRELIQGELDQAVEE-----LEKIA---V 465 (559)
T ss_pred hhhhHHHHHHHHHHHhCcEEE---EEEeeeEEE-EE-ecCh---hhh---hhHHHHHhhHHHHHHH-----HHHhh---h
Confidence 367999999999999999763 334433221 01 1111 111 2235566666654431 01111 0
Q ss_pred cCccCCCccccccccceeeeccCCCCcEEEEEEe--CCCcchHHHHHHHHHhCCceEEEEEEEecCCeeeeEEEE
Q 022480 191 FGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIET--ADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHV 263 (296)
Q Consensus 191 ~~~~~~~r~~~~~~~~~V~v~~~~~~~TvleV~t--~DRPGLL~dIt~~La~~gv~I~~AkI~T~G~ra~D~F~V 263 (296)
| +-.....+|.+.+ ....|++-+..++|++.||||++.. .|..-.+.=.|
T Consensus 466 -----------------v---dll~~~sIiSLiGnvq~ss~i~~rmF~~l~e~giNvqMIS---QGAskvNIS~i 517 (559)
T KOG0456|consen 466 -----------------V---DLLKGRSIISLIGNVQNSSGILERMFCVLAENGINVQMIS---QGASKVNISCI 517 (559)
T ss_pred -----------------h---hhhccchHHhhhhhhhhhhHHHHHHHHHHHhcCcceeeec---cccccceEEEE
Confidence 0 0001122333332 3557999999999999999999864 67665554444
No 306
>PRK14643 hypothetical protein; Provisional
Probab=40.70 E-value=2.4e+02 Score=24.36 Aligned_cols=76 Identities=14% Similarity=0.064 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHCCceEEEEEEEEeCCeEEEEEEEee----cCCCCCCCChHHHHHHHHHHHHhhcccCCCchhHhhhccc
Q 022480 115 ALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITR----LDTGRKVEDPDLLERIRLTIINNLLKYHPESSEQLAMGEA 190 (296)
Q Consensus 115 LLa~i~~vL~~~glnI~~A~I~T~~~~~~d~F~V~~----~~~g~~l~~~~~l~~L~~~L~~~L~~~~~~~~~~La~~~~ 190 (296)
+-..+..++..+|+.+.+......++..+=..+|.+ . .|-.+ +.++.+.+.|...|+.
T Consensus 11 l~~l~~p~~~~~G~eL~die~~~~~~~~~lrV~Id~~~~~~-ggvtl---dDC~~vSr~is~~LD~-------------- 72 (164)
T PRK14643 11 INELVNKELEVLNLKVYEINNLKEFENDMIQILVEDILQAN-KPLDF---DILIKANDLVSNKIDQ-------------- 72 (164)
T ss_pred HHHHHHHHHHhcCCEEEEEEEEecCCCcEEEEEEecCCCcC-CCcCH---HHHHHHHHHHHHHhCc--------------
Q ss_pred cCccCCCccccccccceeeeccCCCCcEEEEEEeC--CCc
Q 022480 191 FGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIETA--DRP 228 (296)
Q Consensus 191 ~~~~~~~r~~~~~~~~~V~v~~~~~~~TvleV~t~--DRP 228 (296)
.+.-+..|.|||+++ |||
T Consensus 73 --------------------~d~i~~~Y~LEVSSPGleRp 92 (164)
T PRK14643 73 --------------------FIKTSEKYLLEISSSGIEKQ 92 (164)
T ss_pred --------------------cCCCCCCeEEEecCCCCCCC
No 307
>PRK14634 hypothetical protein; Provisional
Probab=40.37 E-value=2.3e+02 Score=24.13 Aligned_cols=60 Identities=10% Similarity=-0.011 Sum_probs=45.7
Q ss_pred hHHHHHHHHHhCCceEEEEEEEecCCeeeeEEEEEe-CCCCCChHHHHHHHHHHHHHcCCC
Q 022480 230 LLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSY-GGAALNSSLSQVLVNCLRYYLRRP 289 (296)
Q Consensus 230 LL~dIt~~La~~gv~I~~AkI~T~G~ra~D~F~V~~-~g~~L~~~~~~~L~~~L~~~l~~~ 289 (296)
+-.-+..++..+|+.+...++...|....=..||.. +|..++=+.|+.+..+|-.+|+..
T Consensus 9 i~~l~~~~~~~~G~elvdve~~~~~~~~~lrV~ID~~~g~~v~lddC~~vSr~is~~LD~~ 69 (155)
T PRK14634 9 LETLASATAADKGFELCGIQVLTHLQPMTLQVQIRRSSGSDVSLDDCAGFSGPMGEALEAS 69 (155)
T ss_pred HHHHHHHHHHHcCCEEEEEEEEeCCCCcEEEEEEECCCCCcccHHHHHHHHHHHHHHhccc
Confidence 445566778899999999999887765444566654 666677778999999999999854
No 308
>PRK14638 hypothetical protein; Provisional
Probab=40.27 E-value=2.3e+02 Score=24.04 Aligned_cols=59 Identities=8% Similarity=0.083 Sum_probs=43.7
Q ss_pred HHHHHHHHhCCceEEEEEEEecCCeeeeEEEEEeCCCCCChHHHHHHHHHHHHHcCCCC
Q 022480 232 VEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGGAALNSSLSQVLVNCLRYYLRRPE 290 (296)
Q Consensus 232 ~dIt~~La~~gv~I~~AkI~T~G~ra~D~F~V~~~g~~L~~~~~~~L~~~L~~~l~~~~ 290 (296)
.-+..++..+|+.+...++...|..-.=..+|...+..++=+.|+.+...|..+|+...
T Consensus 12 ~~~~~i~~~~G~elvdve~~~~~~~~~lrV~ID~~~G~v~lddC~~vSr~is~~LD~~d 70 (150)
T PRK14638 12 KEAERIAEEQGLEIFDVQYRRESRGWVLRIIIDNPVGYVSVRDCELFSREIERFLDRED 70 (150)
T ss_pred HHHHHHHHHcCCEEEEEEEEecCCCcEEEEEEECCCCCcCHHHHHHHHHHHHHHhcccc
Confidence 34567788999999999999877654445556444444766689999999999998543
No 309
>cd04923 ACT_AK-LysC-DapG-like_2 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the second and fourth, of four, ACT domains present in cyanobacteria AK. Also included are the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (B. subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=40.04 E-value=1.1e+02 Score=20.41 Aligned_cols=30 Identities=17% Similarity=0.255 Sum_probs=24.6
Q ss_pred EEEEe---CCCccHHHHHHHHHHHCCceEEEEE
Q 022480 105 VQLSF---GDRLGALIDTMNALKDLGLDVAKGT 134 (296)
Q Consensus 105 V~V~~---~DrpGLLa~i~~vL~~~glnI~~A~ 134 (296)
|+|.+ .+.+|++.++...|.++|+++..-.
T Consensus 3 v~v~g~~~~~~~~~~~~i~~~L~~~~i~v~~i~ 35 (63)
T cd04923 3 VSIVGAGMRSHPGVAAKMFKALAEAGINIEMIS 35 (63)
T ss_pred EEEECCCCCCCccHHHHHHHHHHHCCCCEEEEE
Confidence 55554 4779999999999999999997654
No 310
>PRK14631 hypothetical protein; Provisional
Probab=39.30 E-value=2.6e+02 Score=24.39 Aligned_cols=77 Identities=19% Similarity=0.166 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHCCceEEEEEEEEeCCeEEEEEEEeec-----------------CCCCCCCChHHHHHHHHHHHHhhccc
Q 022480 115 ALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRL-----------------DTGRKVEDPDLLERIRLTIINNLLKY 177 (296)
Q Consensus 115 LLa~i~~vL~~~glnI~~A~I~T~~~~~~d~F~V~~~-----------------~~g~~l~~~~~l~~L~~~L~~~L~~~ 177 (296)
+...+.-++..+|+.+.+..+...++..+=.++|..+ +.|-.+ +.++.+.+.|..+|+.
T Consensus 10 i~~li~p~~~~~G~eLvdve~~~~~~~~~LrV~ID~~~~~~~~~~~~~~~~~~~~~gvti---ddC~~vSr~is~~LD~- 85 (174)
T PRK14631 10 LTDIIAPAVAACGVDLWGIEFLPQGKRSLLRIYIDRLVEENAEPVINEDGEVEQGRGIGV---EDCVRVTQQVGAMLDV- 85 (174)
T ss_pred HHHHHHHHHHHcCCEEEEEEEEeCCCceEEEEEEecCcccccccccccccccccCCCcCH---HHHHHHHHHHHHHhcc-
Q ss_pred CCCchhHhhhccccCccCCCccccccccceeeeccCCCCcEEEEEEeC--CCc
Q 022480 178 HPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIETA--DRP 228 (296)
Q Consensus 178 ~~~~~~~La~~~~~~~~~~~r~~~~~~~~~V~v~~~~~~~TvleV~t~--DRP 228 (296)
.+.-+..|.|||+++ |||
T Consensus 86 ---------------------------------~d~i~~~Y~LEVSSPGldRp 105 (174)
T PRK14631 86 ---------------------------------HDPISGEYALEVSSPGWDRP 105 (174)
T ss_pred ---------------------------------cccCCCCeEEEEeCCCCCCc
No 311
>PRK14639 hypothetical protein; Provisional
Probab=38.17 E-value=2.4e+02 Score=23.63 Aligned_cols=62 Identities=13% Similarity=0.096 Sum_probs=44.7
Q ss_pred HHHHHHhCCceEEEEEEEecCCeeeeEEEEEeCCCCCChHHHHHHHHHHHHHcCCCCCccCCC
Q 022480 234 IMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGGAALNSSLSQVLVNCLRYYLRRPETDIDSY 296 (296)
Q Consensus 234 It~~La~~gv~I~~AkI~T~G~ra~D~F~V~~~g~~L~~~~~~~L~~~L~~~l~~~~~~~~~~ 296 (296)
+-.++..+|+.+...++...|..-.=..+|..+|. ++=+.|+++..+|.++|+....-..+|
T Consensus 3 ~ep~~~~~G~eLvdve~~~~~~~~~lrV~Id~~~g-v~iddC~~vSr~is~~LD~~d~i~~~Y 64 (140)
T PRK14639 3 LEALCKECGVSFYDDELVSENGRKIYRVYITKEGG-VNLDDCERLSELLSPIFDVEPPVSGEY 64 (140)
T ss_pred hhHhHHhCCCEEEEEEEEecCCCcEEEEEEeCCCC-CCHHHHHHHHHHHHHHhccccccCCCe
Confidence 34578899999999999988766544566654333 666689999999999998654333333
No 312
>cd04917 ACT_AKiii-LysC-EC_2 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The second ACT domain (ACT2), this CD, is not involved in the binding of heterotrophic effectors. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=38.13 E-value=1.4e+02 Score=20.76 Aligned_cols=42 Identities=19% Similarity=0.298 Sum_probs=27.4
Q ss_pred EEEEEEeC---CCcchHHHHHHHHHhCCceEEEEEEEecCCeeeeE-EEEE
Q 022480 218 SLLYIETA---DRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDK-FHVS 264 (296)
Q Consensus 218 TvleV~t~---DRPGLL~dIt~~La~~gv~I~~AkI~T~G~ra~D~-F~V~ 264 (296)
..+.+.+. ++||++.++.++|.+. +|.. -++|...... |.|.
T Consensus 2 alIsvvG~~~~~~~~v~~~i~~~L~~i--~i~~---i~~~~s~~~is~~V~ 47 (64)
T cd04917 2 ALVALIGNDISETAGVEKRIFDALEDI--NVRM---ICYGASNHNLCFLVK 47 (64)
T ss_pred eEEEEECCCccCCcCHHHHHHHHHHhC--CeEE---EEEecCccEEEEEEe
Confidence 34566665 7899999999999864 4443 3345554444 6664
No 313
>PRK15385 magnesium transport protein MgtC; Provisional
Probab=37.92 E-value=2.4e+02 Score=25.78 Aligned_cols=66 Identities=6% Similarity=0.067 Sum_probs=43.4
Q ss_pred CcEEEEEEeCCCcc--hHHHHHHHHHhCCceEEEEEEEecC--CeeeeEEEEEeCCCCCChHHHHHHHHHHH
Q 022480 216 KRSLLYIETADRPG--LLVEIMKIIADVNVDVESAEIDTEG--LVAKDKFHVSYGGAALNSSLSQVLVNCLR 283 (296)
Q Consensus 216 ~~TvleV~t~DRPG--LL~dIt~~La~~gv~I~~AkI~T~G--~ra~D~F~V~~~g~~L~~~~~~~L~~~L~ 283 (296)
.++.++|.|.+.++ +...+.+.|.+.++.+.+.++...+ +.++=...+...+. .+...+++.+.|.
T Consensus 141 ~~~~~~v~~~~~~~~~vr~~L~~~l~~~~~~~~~l~~~~~~~~~~~ei~a~l~~~~~--~~~~le~iv~~L~ 210 (225)
T PRK15385 141 KRYILKVTCNKEDESAVRQWLLNIVKEAAICLQGLGSVPAQEQGYKEIRAELVGHAD--YRKTRELIISRIG 210 (225)
T ss_pred eEEEEEEEEcCcchhHHHHHHHHHHHhCCCceEEeEeeecCCCCeEEEEEEEEecCC--chhhHHHHHHHHh
Confidence 36788899988665 5899999999999999999996543 33333333322222 2334555555543
No 314
>PRK14637 hypothetical protein; Provisional
Probab=36.70 E-value=2.7e+02 Score=23.72 Aligned_cols=60 Identities=8% Similarity=0.052 Sum_probs=46.0
Q ss_pred cchHHHHHHHHHhCCceEEEEEEEecCCeeeeEEEEEeCCCCCChHHHHHHHHHHHHHcCC
Q 022480 228 PGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGGAALNSSLSQVLVNCLRYYLRR 288 (296)
Q Consensus 228 PGLL~dIt~~La~~gv~I~~AkI~T~G~ra~D~F~V~~~g~~L~~~~~~~L~~~L~~~l~~ 288 (296)
-|.-..+..++.++|+.+...++...|..-.=..+|..+|. ++-+.|+++..+|..+|+.
T Consensus 8 ~~~~~~v~p~~~~~g~eLvdve~~~~~~~~~lrV~ID~~~g-V~iddC~~vSr~Is~~LD~ 67 (151)
T PRK14637 8 LGYFSECEPVVEGLGCKLVDLSRRVQQAQGRVRAVIYSAGG-VGLDDCARVHRILVPRLEA 67 (151)
T ss_pred ccHHHHHHHHHHhcCCEEEEEEEEecCCCcEEEEEEECCCC-CCHHHHHHHHHHHHHHhcc
Confidence 47778889999999999999999988765333455543332 6666899999998888875
No 315
>COG0779 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=36.38 E-value=2.8e+02 Score=23.82 Aligned_cols=59 Identities=17% Similarity=0.134 Sum_probs=39.6
Q ss_pred ccHHHHHHHHHHHCCceEEEEEEEEeCCeEEEEEEEeecCCCCCCCChHHHHHHHHHHHHhhc
Q 022480 113 LGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLL 175 (296)
Q Consensus 113 pGLLa~i~~vL~~~glnI~~A~I~T~~~~~~d~F~V~~~~~g~~l~~~~~l~~L~~~L~~~L~ 175 (296)
..+..-+-.++..+|+.+.+..+...+.+..=..++... .| ++ =+.++++.+.+...|+
T Consensus 8 ~~v~~liep~~~~lG~ELv~ve~~~~~~~~~lrI~id~~-g~--v~-lddC~~vSr~is~~LD 66 (153)
T COG0779 8 EKVTELIEPVVESLGFELVDVEFVKEGRDSVLRIYIDKE-GG--VT-LDDCADVSRAISALLD 66 (153)
T ss_pred HHHHHHHHHhHhhcCcEEEEEEEEEcCCCcEEEEEeCCC-CC--CC-HHHHHHHHHHHHHHhc
Confidence 346667778899999999999999998644322334432 33 32 2666777777776654
No 316
>cd04933 ACT_AK1-AT_1 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the first of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine. This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. Like the Escherichia coli AKIII (LysC), Arabidopsis AK1 binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. A loop in common is involved in the binding of both Lys and S-adenosylmethionine providing an explanation for the synergistic inhibition by these effectors. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=35.89 E-value=38 Score=25.56 Aligned_cols=25 Identities=20% Similarity=0.317 Sum_probs=22.7
Q ss_pred eCCCccHHHHHHHHHHHCCceEEEE
Q 022480 109 FGDRLGALIDTMNALKDLGLDVAKG 133 (296)
Q Consensus 109 ~~DrpGLLa~i~~vL~~~glnI~~A 133 (296)
.++.+|..+++..+|+++|+||.--
T Consensus 11 ~~~~~g~~a~IF~~La~~~InVDmI 35 (78)
T cd04933 11 MLGQYGFLAKVFSIFETLGISVDVV 35 (78)
T ss_pred CCCccCHHHHHHHHHHHcCCcEEEE
Confidence 4688999999999999999999865
No 317
>cd04915 ACT_AK-Ectoine_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and various other halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinas
Probab=35.61 E-value=1.6e+02 Score=20.89 Aligned_cols=32 Identities=22% Similarity=0.269 Sum_probs=25.0
Q ss_pred EEEEEeC--CCccHHHHHHHHHHHCCceEEEEEE
Q 022480 104 IVQLSFG--DRLGALIDTMNALKDLGLDVAKGTV 135 (296)
Q Consensus 104 ~V~V~~~--DrpGLLa~i~~vL~~~glnI~~A~I 135 (296)
.|.++|. .++|+.+++..+|.+.|++++.-..
T Consensus 4 ~VsvVG~gm~~~gv~~ki~~~L~~~~I~v~~i~~ 37 (66)
T cd04915 4 IVSVIGRDLSTPGVLARGLAALAEAGIEPIAAHQ 37 (66)
T ss_pred EEEEECCCCCcchHHHHHHHHHHHCCCCEEEEEe
Confidence 4666654 2689999999999999999975433
No 318
>PRK04998 hypothetical protein; Provisional
Probab=35.32 E-value=2e+02 Score=21.96 Aligned_cols=68 Identities=9% Similarity=-0.049 Sum_probs=40.3
Q ss_pred CCeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEeCCeEEEEEEEeecCCCCCCCChHHHHHHHHHHHH
Q 022480 100 SDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIIN 172 (296)
Q Consensus 100 ~~~t~V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~~~~~~d~F~V~~~~~g~~l~~~~~l~~L~~~L~~ 172 (296)
+-.+.+.|.|++.+++...|..++..+.-.-..-++-...+|..-.+.|.-. +.+++++..|-+.|.+
T Consensus 13 Pc~~~~Kvig~~~~~~~~~v~~v~~~~~~~~~~~~~r~S~~GkY~Svtv~v~-----v~s~eq~~~iY~~L~~ 80 (88)
T PRK04998 13 PCSFTYKVMGLARPELVDQVVEVVQRHAPGDYTPTVKPSSKGNYHSVSITIT-----ATSIEQVETLYEELAK 80 (88)
T ss_pred CCCceEEEEEeCcHhHHHHHHHHHHHhCCCCCCceEccCCCCEEEEEEEEEE-----ECCHHHHHHHHHHHhc
Confidence 3457899999999999999999998874332111222223333222333321 2344666766666654
No 319
>PRK09224 threonine dehydratase; Reviewed
Probab=33.63 E-value=2.3e+02 Score=28.79 Aligned_cols=63 Identities=13% Similarity=0.192 Sum_probs=40.1
Q ss_pred cEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCeeeeEEEEEe-CCCCCChHHHHHHHHHHHH
Q 022480 217 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSY-GGAALNSSLSQVLVNCLRY 284 (296)
Q Consensus 217 ~TvleV~t~DRPGLL~dIt~~La~~gv~I~~AkI~T~G~ra~D~F~V~~-~g~~L~~~~~~~L~~~L~~ 284 (296)
...+.|.-+||||=|.+++++|. +.||...+-.-.+..-..+|..-. .+.. .+.++|.++|++
T Consensus 328 e~~l~v~iPerPGaL~~f~~~l~--~~nItef~yr~~~~~~a~V~vgie~~~~~---~~~~~i~~~L~~ 391 (504)
T PRK09224 328 EALLAVTIPEEPGSFLKFCELLG--GRNVTEFNYRYADAKEAHIFVGVQLSRGQ---EERAEIIAQLRA 391 (504)
T ss_pred EEEEEEEeCCCCCHHHHHHHHhc--cCcEEEEEEEecCCCeEEEEEEEEeCChh---hHHHHHHHHHHH
Confidence 67889999999999999999999 566665554433333333443322 3211 125667777653
No 320
>PRK14636 hypothetical protein; Provisional
Probab=33.58 E-value=3.3e+02 Score=23.82 Aligned_cols=61 Identities=10% Similarity=-0.066 Sum_probs=45.6
Q ss_pred chHHHHHHHHHhCCceEEEEEEEecCCeeeeEEEEEe-CCCCCChHHHHHHHHHHHHHcCCC
Q 022480 229 GLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSY-GGAALNSSLSQVLVNCLRYYLRRP 289 (296)
Q Consensus 229 GLL~dIt~~La~~gv~I~~AkI~T~G~ra~D~F~V~~-~g~~L~~~~~~~L~~~L~~~l~~~ 289 (296)
-|-.-+..++..+|+.+...++...|....=..+|.+ +|..++=+.|+.+..+|-..|+..
T Consensus 6 ~i~~lvep~~~~~GleLvdve~~~~~~~~~lrV~ID~~~~ggV~lDDC~~vSr~Is~~LD~~ 67 (176)
T PRK14636 6 ALTALIEPEAKALGLDLVRVAMFGGKSDPTLQIMAERPDTRQLVIEDCAALSRRLSDVFDEL 67 (176)
T ss_pred HHHHHHHHHHHHcCCEEEEEEEEcCCCCeEEEEEEECCCCCCcCHHHHHHHHHHHHHHhccC
Confidence 3555677889999999999999887755443455544 345577668999999999999844
No 321
>cd07247 SgaA_N_like N-terminal domain of Streptomyces griseus SgaA (suppression of growth disturbance caused by A-factor at a high concentration under high osmolality during early growth phase), and similar domains. SgaA suppresses the growth disturbances caused by high osmolarity and a high concentration of A-factor, a microbial hormone, during the early growth phase in Streptomyces griseus. A-factor (2-isocapryloyl-3R-hydroxymethyl-gamma-butyrolactone) controls morphological differentiation and secondary metabolism in Streptomyces griseus. It is a chemical signaling molecule that at a very low concentration acts as a switch for yellow pigment production, aerial mycelium formation, streptomycin production, and streptomycin resistance. The structure and amino acid sequence of SgaA are closely related to a group of antibiotics resistance proteins, including bleomycin resistance protein, mitomycin resistance protein, and fosfomycin resistance proteins. SgaA might also function as a strep
Probab=33.51 E-value=1.7e+02 Score=21.95 Aligned_cols=51 Identities=12% Similarity=0.068 Sum_probs=36.6
Q ss_pred CCeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEeCCeEEEEEEEeecCCCCCC
Q 022480 100 SDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKV 157 (296)
Q Consensus 100 ~~~t~V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~~~~~~d~F~V~~~~~g~~l 157 (296)
.+...+.+...| +..+.+.|..+|+++........+.+ ..|++.++ +|..+
T Consensus 60 ~~~~~~~f~v~d----i~~~~~~l~~~g~~~~~~~~~~~~~~--~~~~~~DP-dG~~~ 110 (114)
T cd07247 60 PPGWLVYFAVDD----VDAAAARVEAAGGKVLVPPTDIPGVG--RFAVFADP-EGAVF 110 (114)
T ss_pred CCeEEEEEEeCC----HHHHHHHHHHCCCEEEeCCcccCCcE--EEEEEECC-CCCEE
Confidence 455677788888 67788888999999987654333233 35889996 88764
No 322
>TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, long form. Forms scoring between the trusted and noise cutoff tend to branch with this subgroup of threonine ammonia-lyase phylogenetically but have only a single copy of the C-terminal domain.
Probab=33.44 E-value=2e+02 Score=29.22 Aligned_cols=63 Identities=11% Similarity=0.204 Sum_probs=41.2
Q ss_pred CcEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCeeeeEEEEEe-CCCCCChHHHHHHHHHHHH
Q 022480 216 KRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSY-GGAALNSSLSQVLVNCLRY 284 (296)
Q Consensus 216 ~~TvleV~t~DRPGLL~dIt~~La~~gv~I~~AkI~T~G~ra~D~F~V~~-~g~~L~~~~~~~L~~~L~~ 284 (296)
....+.|.-+||||-|.+++++|... ||...+-.-.+.....+|..-. .| .+++++|.+.|++
T Consensus 324 re~~l~V~iPerPGal~~f~~~i~~~--nItef~yr~~~~~~a~v~vgie~~~----~~~~~~l~~~L~~ 387 (499)
T TIGR01124 324 REALLAVTIPEQPGSFLKFCELLGNR--NITEFNYRYADRKDAHIFVGVQLSN----PQERQEILARLND 387 (499)
T ss_pred CEEEEEEEeCCCCCHHHHHHHHhhhc--ceEEEEEEecCCCeEEEEEEEEeCC----HHHHHHHHHHHHH
Confidence 36888999999999999999999984 5555444323322233443322 32 2366778787764
No 323
>PF09383 NIL: NIL domain; InterPro: IPR018449 This domain is found at the C terminus of ABC transporter proteins involved in D-methionine transport as well as a number of ferredoxin-like proteins. This domain is likely to act as a substrate binding domain. The domain has been named after a conserved sequence in some members of the family. ; PDB: 2QRR_A 3CED_A 2QSW_A 3TUZ_D 3TUJ_D 3DHX_B 3TUI_H 3DHW_D.
Probab=33.05 E-value=1.9e+02 Score=20.94 Aligned_cols=61 Identities=5% Similarity=0.107 Sum_probs=40.7
Q ss_pred EEEEEeCCCc-cHHHHHHHHHHHCCceEEEEEEEEeCCeEEEEEEEeecCCCCCCCChHHHHHHHHHHH
Q 022480 104 IVQLSFGDRL-GALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTII 171 (296)
Q Consensus 104 ~V~V~~~Drp-GLLa~i~~vL~~~glnI~~A~I~T~~~~~~d~F~V~~~~~g~~l~~~~~l~~L~~~L~ 171 (296)
.|.+.+.... .+++.+++.+ ....||..|.|....+..+..|++.-. |. ++.+++..+.|.
T Consensus 6 ~l~f~g~~~~~piis~l~~~~-~v~~nIl~g~i~~i~~~~~G~l~l~l~--g~----~~~~~~a~~~L~ 67 (76)
T PF09383_consen 6 RLTFTGNSAQEPIISQLIREF-GVDVNILHGNIEEIQGTPFGILILELP--GD----DEEIEKAIAYLR 67 (76)
T ss_dssp EEEEESCSSSSCHHHHHHHHH-T-EEEEEEEEEEEETTEEEEEEEEEEE--S-----HHHHHHHHHHHH
T ss_pred EEEEcCCCcCchHHHHHHHHh-CCCEEEEEEEeEEcCCeeEEEEEEEEE--CC----HHHHHHHHHHHH
Confidence 3444444443 3777777776 778999999999999998888888763 53 244455554444
No 324
>COG3603 Uncharacterized conserved protein [Function unknown]
Probab=31.13 E-value=71 Score=26.51 Aligned_cols=30 Identities=20% Similarity=0.324 Sum_probs=24.4
Q ss_pred EEEEEEeC---CCcchHHHHHHHHHhCCceEEE
Q 022480 218 SLLYIETA---DRPGLLVEIMKIIADVNVDVES 247 (296)
Q Consensus 218 TvleV~t~---DRPGLL~dIt~~La~~gv~I~~ 247 (296)
..+.+.++ |-+|+|+.|.+.|++.||.|.-
T Consensus 64 ~~lk~~gpf~FgltGilasV~~pLsd~gigIFa 96 (128)
T COG3603 64 SCLKFEGPFDFGLTGILASVSQPLSDNGIGIFA 96 (128)
T ss_pred EEEEEeccccCCcchhhhhhhhhHhhCCccEEE
Confidence 44555554 9999999999999999998853
No 325
>cd04914 ACT_AKi-DapG-BS_1 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria, bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The B. subtilis AKI is tetrameric consisting of two alpha and
Probab=30.64 E-value=92 Score=22.33 Aligned_cols=30 Identities=13% Similarity=0.145 Sum_probs=24.6
Q ss_pred EEEEEe-CCCccHHHHHHHHHHHCCceEEEE
Q 022480 104 IVQLSF-GDRLGALIDTMNALKDLGLDVAKG 133 (296)
Q Consensus 104 ~V~V~~-~DrpGLLa~i~~vL~~~glnI~~A 133 (296)
.|+|.+ ++.+|.++++.+.|+++|+||---
T Consensus 3 ~vtv~~~~~~~~~~a~if~~La~~~InvDmI 33 (67)
T cd04914 3 QIKVKAKDNENDLQQRVFKALANAGISVDLI 33 (67)
T ss_pred EEEEecCCCCccHHHHHHHHHHHcCCcEEEE
Confidence 445553 466999999999999999999877
No 326
>PRK09034 aspartate kinase; Reviewed
Probab=30.60 E-value=2.7e+02 Score=27.81 Aligned_cols=38 Identities=13% Similarity=0.201 Sum_probs=30.7
Q ss_pred CCeEEEEEEe---CCCccHHHHHHHHHHHCCceEEEEEEEE
Q 022480 100 SDATIVQLSF---GDRLGALIDTMNALKDLGLDVAKGTVNT 137 (296)
Q Consensus 100 ~~~t~V~V~~---~DrpGLLa~i~~vL~~~glnI~~A~I~T 137 (296)
.+...|.|.| .+.+|+++++..+|.++|+||.--...+
T Consensus 383 ~~va~VsivG~g~~~~~gv~arif~aL~~~~InV~mIsq~~ 423 (454)
T PRK09034 383 HDLAIIMVVGEGMRQTVGVAAKITKALAEANINIQMINQGS 423 (454)
T ss_pred CCEEEEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecC
Confidence 4566788865 4789999999999999999998665433
No 327
>PRK08841 aspartate kinase; Validated
Probab=30.51 E-value=2.9e+02 Score=27.14 Aligned_cols=33 Identities=21% Similarity=0.274 Sum_probs=29.8
Q ss_pred CCeEEEEEEeCCCccHHHHHHHHHHHCCceEEE
Q 022480 100 SDATIVQLSFGDRLGALIDTMNALKDLGLDVAK 132 (296)
Q Consensus 100 ~~~t~V~V~~~DrpGLLa~i~~vL~~~glnI~~ 132 (296)
.+...|.+.|...+|+.+++..+|.+.|+||..
T Consensus 316 ~~~a~vsvVG~~~~gv~~~~~~aL~~~~I~i~~ 348 (392)
T PRK08841 316 ESVSLLTLVGLEANGMVEHACNLLAQNGIDVRQ 348 (392)
T ss_pred CCEEEEEEECCCChHHHHHHHHHHHhCCCCEEE
Confidence 466789999999999999999999999999954
No 328
>cd04920 ACT_AKiii-DAPDC_2 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC). This CD includes the second of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=30.09 E-value=2e+02 Score=20.19 Aligned_cols=27 Identities=15% Similarity=0.064 Sum_probs=22.0
Q ss_pred EEEEEeC---CCccHHHHHHHHHHHCCceE
Q 022480 104 IVQLSFG---DRLGALIDTMNALKDLGLDV 130 (296)
Q Consensus 104 ~V~V~~~---DrpGLLa~i~~vL~~~glnI 130 (296)
.|.+.|. +.+|+++++.++|.+.|+++
T Consensus 2 ~VsvVG~g~~~~~gv~~~~~~~L~~~~i~~ 31 (63)
T cd04920 2 AVSLVGRGIRSLLHKLGPALEVFGKKPVHL 31 (63)
T ss_pred EEEEECCCcccCccHHHHHHHHHhcCCceE
Confidence 4566664 78999999999999987766
No 329
>TIGR00657 asp_kinases aspartate kinase. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. This may be a feature of a number of closely related forms, including a paralog from B. subtilis.
Probab=29.98 E-value=3.2e+02 Score=26.95 Aligned_cols=35 Identities=17% Similarity=0.152 Sum_probs=29.0
Q ss_pred CCeEEEEEEe---CCCccHHHHHHHHHHHCCceEEEEE
Q 022480 100 SDATIVQLSF---GDRLGALIDTMNALKDLGLDVAKGT 134 (296)
Q Consensus 100 ~~~t~V~V~~---~DrpGLLa~i~~vL~~~glnI~~A~ 134 (296)
.+...|.|.| .+.+|+++++...|+.+|+||..-.
T Consensus 376 ~~~a~VsvvG~~~~~~~g~~a~if~~La~~~Inv~~i~ 413 (441)
T TIGR00657 376 KGLAKVSLVGAGMKSAPGVASKIFEALAQNGINIEMIS 413 (441)
T ss_pred CCeEEEEEEcCCCCCCCchHHHHHHHHHHCCCCEEEEE
Confidence 4556788865 4789999999999999999997654
No 330
>PLN02550 threonine dehydratase
Probab=29.88 E-value=2.1e+02 Score=30.00 Aligned_cols=62 Identities=11% Similarity=0.123 Sum_probs=39.5
Q ss_pred cEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEe-cCCeeeeEEEEEeCCCCCChHHHHHHHHHHHH
Q 022480 217 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDT-EGLVAKDKFHVSYGGAALNSSLSQVLVNCLRY 284 (296)
Q Consensus 217 ~TvleV~t~DRPGLL~dIt~~La~~gv~I~~AkI~T-~G~ra~D~F~V~~~g~~L~~~~~~~L~~~L~~ 284 (296)
...+.|.-+||||-|.+++++|... ||...+-.- ..+.+.=.+-|.-.| .++.++|.++|++
T Consensus 417 ~~~~~v~ipd~pG~l~~~~~~l~~~--ni~~~~~~~~~~~~~~v~v~ie~~~----~~~~~~i~~~l~~ 479 (591)
T PLN02550 417 EAVLATFMPEEPGSFKRFCELVGPM--NITEFKYRYSSEKEALVLYSVGVHT----EQELQALKKRMES 479 (591)
T ss_pred EEEEEEEcCCCCCHHHHHHHHhhhh--cceEEEEEecCCCceEEEEEEEeCC----HHHHHHHHHHHHH
Confidence 5778999999999999999999987 665544432 122333333333232 2356666666654
No 331
>PRK00092 ribosome maturation protein RimP; Reviewed
Probab=29.50 E-value=3.5e+02 Score=22.82 Aligned_cols=60 Identities=12% Similarity=0.127 Sum_probs=42.9
Q ss_pred hHHHHHHHHHhCCceEEEEEEEecCCeeeeEEEEEeCCCCCChHHHHHHHHHHHHHcCCCC
Q 022480 230 LLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGGAALNSSLSQVLVNCLRYYLRRPE 290 (296)
Q Consensus 230 LL~dIt~~La~~gv~I~~AkI~T~G~ra~D~F~V~~~g~~L~~~~~~~L~~~L~~~l~~~~ 290 (296)
+-.-+..++..+|+.+...++...|..-.=..+|...+ .++=+.|+.+...|..+|+...
T Consensus 9 i~~~~~~~~~~~g~~l~dv~~~~~~~~~~l~V~Id~~~-gv~iddc~~~Sr~is~~LD~~d 68 (154)
T PRK00092 9 LTELIEPVVEALGYELVDVEYVKEGRDSTLRIYIDKEG-GIDLDDCEEVSRQISAVLDVED 68 (154)
T ss_pred HHHHHHHHHHHCCCEEEEEEEEecCCCcEEEEEEECCC-CCCHHHHHHHHHHHHHHhcccc
Confidence 33456778899999999999998765543344454322 2555689999999999998544
No 332
>PF02576 DUF150: Uncharacterised BCR, YhbC family COG0779; InterPro: IPR003728 The RimP protein facilitates maturation of the 30S ribsomal subunit, and is required for the efficient production of translationally competent ribosmomes [].; PDB: 1IB8_A.
Probab=29.25 E-value=2.5e+02 Score=23.17 Aligned_cols=54 Identities=11% Similarity=0.196 Sum_probs=37.3
Q ss_pred HHHHHHhCCceEEEEEEEecCCeeeeEEEEEeCCCCCChHHHHHHHHHHHHHcCC
Q 022480 234 IMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGGAALNSSLSQVLVNCLRYYLRR 288 (296)
Q Consensus 234 It~~La~~gv~I~~AkI~T~G~ra~D~F~V~~~g~~L~~~~~~~L~~~L~~~l~~ 288 (296)
|..++..+|+.+...++...|+...=..+|..++. ++=+.|+++...+...|+.
T Consensus 2 i~~~~~~~g~~l~~v~~~~~~~~~~l~V~id~~~g-v~lddc~~~sr~i~~~LD~ 55 (141)
T PF02576_consen 2 IEPLLEELGLELVDVEVVKEGGNRILRVFIDKDGG-VSLDDCEKVSRAISALLDA 55 (141)
T ss_dssp HHHHH-S-SSEEEEEEEEEETTEEEEEEEEE-SS----HHHHHHHHHHHGGGTTT
T ss_pred cccchhhcCCEEEEEEEEECCCCEEEEEEEEeCCC-CCHHHHHHHHHHHHHHHcc
Confidence 45678899999999999998876443344433444 7777899999999999887
No 333
>PF14226 DIOX_N: non-haem dioxygenase in morphine synthesis N-terminal; PDB: 3OOX_A 1BK0_A 1IPS_B 1QIQ_A 1OC1_A 2Y86_A 2Y60_A 1W03_A 2VE1_A 1QJF_A ....
Probab=28.47 E-value=13 Score=29.24 Aligned_cols=51 Identities=16% Similarity=0.241 Sum_probs=36.4
Q ss_pred eCCCcchHHHHHHHHHhCCceEEEEEEEecCCeeeeEEEEEeCCCCCChHHHHHHHHHHHHHcCCCCCcc
Q 022480 224 TADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGGAALNSSLSQVLVNCLRYYLRRPETDI 293 (296)
Q Consensus 224 t~DRPGLL~dIt~~La~~gv~I~~AkI~T~G~ra~D~F~V~~~g~~L~~~~~~~L~~~L~~~l~~~~~~~ 293 (296)
..+|+.++..|.+++.+.|. |||.++| |..+.++++.+..+.....|..++
T Consensus 10 ~~~~~~~~~~l~~A~~~~GF-----------------f~l~nhG--i~~~l~~~~~~~~~~fF~lp~e~K 60 (116)
T PF14226_consen 10 PADREEVAEQLRDACEEWGF-----------------FYLVNHG--IPQELIDRVFAAAREFFALPLEEK 60 (116)
T ss_dssp HHHHHHHHHHHHHHHHHTSE-----------------EEEESSS--SSHHHHHHHHHHHHHHHCSHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCE-----------------EEEeccc--ccchhhHHHHHHHHHHHHhhHHHH
Confidence 45677889999999999885 7786665 556666777777777666655443
No 334
>PRK06291 aspartate kinase; Provisional
Probab=28.28 E-value=3.6e+02 Score=27.01 Aligned_cols=39 Identities=15% Similarity=0.202 Sum_probs=31.1
Q ss_pred CCeEEEEEEeC---CCccHHHHHHHHHHHCCceEEEEEEEEe
Q 022480 100 SDATIVQLSFG---DRLGALIDTMNALKDLGLDVAKGTVNTE 138 (296)
Q Consensus 100 ~~~t~V~V~~~---DrpGLLa~i~~vL~~~glnI~~A~I~T~ 138 (296)
.+...|.|.|. +++|+.+++..+|...|+||+.-...+.
T Consensus 396 ~~~a~IsvvG~gm~~~~gv~~rif~aL~~~~I~v~~isqgsS 437 (465)
T PRK06291 396 KDVCVVAVVGAGMAGTPGVAGRIFSALGESGINIKMISQGSS 437 (465)
T ss_pred CCEEEEEEEcCCccCCcChHHHHHHHHHHCCCCEEEEEeccc
Confidence 45567888885 7999999999999999999985444333
No 335
>PRK08841 aspartate kinase; Validated
Probab=28.21 E-value=82 Score=30.97 Aligned_cols=61 Identities=16% Similarity=0.157 Sum_probs=41.7
Q ss_pred CcEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCeeeeEEEEEeCCCCCChHHHHHHHHHHHHHcC
Q 022480 216 KRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGGAALNSSLSQVLVNCLRYYLR 287 (296)
Q Consensus 216 ~~TvleV~t~DRPGLL~dIt~~La~~gv~I~~AkI~T~G~ra~D~F~V~~~g~~L~~~~~~~L~~~L~~~l~ 287 (296)
+...|.+.+...||+++++.++|.+.|++|...- + ++ ..=.|.|.. +..++..++|...+-
T Consensus 317 ~~a~vsvVG~~~~gv~~~~~~aL~~~~I~i~~i~--~-s~-~~is~vv~~-------~~~~~av~~lH~~f~ 377 (392)
T PRK08841 317 SVSLLTLVGLEANGMVEHACNLLAQNGIDVRQCS--T-EP-QSSMLVLDP-------ANVDRAANILHKTYV 377 (392)
T ss_pred CEEEEEEECCCChHHHHHHHHHHHhCCCCEEEEE--C-CC-cEEEEEEeH-------HHHHHHHHHHHHHHc
Confidence 4688999999999999999999999999995543 2 33 333355532 223455566665544
No 336
>PRK09084 aspartate kinase III; Validated
Probab=27.09 E-value=3e+02 Score=27.45 Aligned_cols=34 Identities=24% Similarity=0.458 Sum_probs=29.8
Q ss_pred CcEEEEEEeC---CCcchHHHHHHHHHhCCceEEEEE
Q 022480 216 KRSLLYIETA---DRPGLLVEIMKIIADVNVDVESAE 249 (296)
Q Consensus 216 ~~TvleV~t~---DRPGLL~dIt~~La~~gv~I~~Ak 249 (296)
+.+.|.|.+. +.+|++++|..+|+++||+|....
T Consensus 305 ~i~lItv~~~~~~~~~g~~a~if~~l~~~~I~Vd~I~ 341 (448)
T PRK09084 305 NQTLLTLHSLNMLHARGFLAEVFGILARHKISVDLIT 341 (448)
T ss_pred CEEEEEEecCCCCccccHHHHHHHHHHHcCCeEEEEe
Confidence 4678888755 789999999999999999999886
No 337
>PLN02551 aspartokinase
Probab=26.18 E-value=3.8e+02 Score=27.48 Aligned_cols=38 Identities=16% Similarity=0.129 Sum_probs=30.2
Q ss_pred CCeEEEEEEeC--CCccHHHHHHHHHHHCCceEEEEEEEE
Q 022480 100 SDATIVQLSFG--DRLGALIDTMNALKDLGLDVAKGTVNT 137 (296)
Q Consensus 100 ~~~t~V~V~~~--DrpGLLa~i~~vL~~~glnI~~A~I~T 137 (296)
.+...|.|+|. ..+|+++++..+|...|+||+.-...+
T Consensus 443 ~~vAiISvVG~~~~~~gvaariF~aLa~~gInV~mIsqga 482 (521)
T PLN02551 443 QGRSIISLIGNVQRSSLILEKVFRVLRTNGVNVQMISQGA 482 (521)
T ss_pred CCEEEEEEEccCCCCccHHHHHHHHHHHCCCCeEEEEecC
Confidence 45667888764 689999999999999999998654433
No 338
>PRK14645 hypothetical protein; Provisional
Probab=25.21 E-value=4.3e+02 Score=22.53 Aligned_cols=60 Identities=10% Similarity=0.002 Sum_probs=45.5
Q ss_pred hHHHHHHHHHhCCceEEEEEEEecCCeeeeEEEEEe-CCCCCChHHHHHHHHHHHHHcCCC
Q 022480 230 LLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSY-GGAALNSSLSQVLVNCLRYYLRRP 289 (296)
Q Consensus 230 LL~dIt~~La~~gv~I~~AkI~T~G~ra~D~F~V~~-~g~~L~~~~~~~L~~~L~~~l~~~ 289 (296)
+-..+..++..+|+.+...++...|..-.=..+|.. +|..++=+.|+++...|-..|+..
T Consensus 11 i~~li~~~~~~~G~elvdve~~~~~~~~ilrV~ID~~~~~~v~lddC~~vSr~is~~LD~~ 71 (154)
T PRK14645 11 LQQLAEGALEPLGYEVLEVQVQRSGGKRIVLVRIDRKDEQPVTVEDLERASRALEAELDRL 71 (154)
T ss_pred HHHHHHHHHHHcCCEEEEEEEEeCCCCeEEEEEEECCCCCCcCHHHHHHHHHHHHHHhccc
Confidence 555677889999999999999877654333455543 466787778999999999999854
No 339
>cd04934 ACT_AK-Hom3_1 CT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydro
Probab=23.14 E-value=78 Score=23.30 Aligned_cols=54 Identities=15% Similarity=0.101 Sum_probs=34.2
Q ss_pred CCCccHHHHHHHHHHHCCceEEEEEEEEeCCeEEEEEEEeecCCCCCCCChHHHHHHHHHHHH
Q 022480 110 GDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIIN 172 (296)
Q Consensus 110 ~DrpGLLa~i~~vL~~~glnI~~A~I~T~~~~~~d~F~V~~~~~g~~l~~~~~l~~L~~~L~~ 172 (296)
.-.+|+++++.+.|+++|+||.--.. ++ .--.|.+.. .. +.+ +.++.|...|.+
T Consensus 12 ~~~~g~~~~If~~la~~~I~vd~I~~---s~-~~isftv~~---~~-~~~-~~l~~l~~el~~ 65 (73)
T cd04934 12 SLSHGFLARIFAILDKYRLSVDLIST---SE-VHVSMALHM---EN-AED-TNLDAAVKDLQK 65 (73)
T ss_pred ccccCHHHHHHHHHHHcCCcEEEEEe---CC-CEEEEEEeh---hh-cCh-HHHHHHHHHHHH
Confidence 44689999999999999999986532 22 112355543 21 221 266666666665
No 340
>COG2061 ACT-domain-containing protein, predicted allosteric regulator of homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=23.13 E-value=98 Score=26.83 Aligned_cols=34 Identities=15% Similarity=0.331 Sum_probs=29.4
Q ss_pred eEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEE
Q 022480 102 ATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTV 135 (296)
Q Consensus 102 ~t~V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I 135 (296)
...+.|.-+|+||-|..+-+=|+..|.||..--=
T Consensus 5 ritldIEL~D~PGQLl~vLqPls~~g~NiItIiH 38 (170)
T COG2061 5 RITLDIELKDKPGQLLKVLQPLSKTGANIITIIH 38 (170)
T ss_pred EEEEEEEecCCCcchhhhhcchhhcCccEEEEEe
Confidence 4567888999999999999999999999986433
No 341
>PF09904 HTH_43: Winged helix-turn helix; InterPro: IPR017162 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.; PDB: 3KE2_B.
Probab=22.45 E-value=1.9e+02 Score=22.68 Aligned_cols=40 Identities=8% Similarity=0.229 Sum_probs=25.5
Q ss_pred HHHHHHHHHhCCceEEEEEEEecCCeeeeEEEEEeCCCCCChH
Q 022480 231 LVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGGAALNSS 273 (296)
Q Consensus 231 L~dIt~~La~~gv~I~~AkI~T~G~ra~D~F~V~~~g~~L~~~ 273 (296)
+.+..++|.+.||.+...+ .|+|-.+=+|--.+=++|+.+
T Consensus 38 ~Qd~i~aL~~~~I~~~Fvq---~G~R~~~GyY~i~~WG~id~~ 77 (90)
T PF09904_consen 38 IQDTIKALPELGIECEFVQ---DGERNNAGYYRISDWGPIDRK 77 (90)
T ss_dssp HHHHHHGGGGGT-EEEEE-----TTS-S--EEEEEE-TTB-HH
T ss_pred HHHHHHHhhcCCeEEEEEe---cCccCCCCcEEeeecCCCCHH
Confidence 6788999999999999888 788877766665545577766
No 342
>PRK14640 hypothetical protein; Provisional
Probab=22.00 E-value=4.9e+02 Score=22.01 Aligned_cols=58 Identities=7% Similarity=0.012 Sum_probs=42.9
Q ss_pred hHHHHHHHHHhCCceEEEEEEEecCCeeeeEEEEEe-CCCCCChHHHHHHHHHHHHHcCCC
Q 022480 230 LLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSY-GGAALNSSLSQVLVNCLRYYLRRP 289 (296)
Q Consensus 230 LL~dIt~~La~~gv~I~~AkI~T~G~ra~D~F~V~~-~g~~L~~~~~~~L~~~L~~~l~~~ 289 (296)
+-.-+..++..+|+.+...++...|..-.=..+|.. +| ++=+.|+.+..+|..+|+..
T Consensus 8 i~~li~p~~~~~G~el~dve~~~~~~~~~lrV~ID~~~g--v~lddC~~vSr~is~~LD~~ 66 (152)
T PRK14640 8 LTDLLEAPVVALGFELWGIEFIRAGKHSTLRVYIDGENG--VSVENCAEVSHQVGAIMDVE 66 (152)
T ss_pred HHHHHHHHHHhcCCEEEEEEEEecCCCcEEEEEEECCCC--CCHHHHHHHHHHHHHHhccc
Confidence 334566778899999999999877654433455544 44 66668999999999999854
No 343
>PRK14637 hypothetical protein; Provisional
Probab=21.67 E-value=5e+02 Score=22.02 Aligned_cols=62 Identities=16% Similarity=0.204 Sum_probs=45.5
Q ss_pred CCCccHHHHHHHHHHHCCceEEEEEEEEeCCeEEEEEEEeecCCCCCCCChHHHHHHHHHHHHhhc
Q 022480 110 GDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLL 175 (296)
Q Consensus 110 ~DrpGLLa~i~~vL~~~glnI~~A~I~T~~~~~~d~F~V~~~~~g~~l~~~~~l~~L~~~L~~~L~ 175 (296)
+--.|-...+..++..+|+.+.+..+...+...+=..+|.. ++| ++ =+.++.+.+.|...|+
T Consensus 5 ~~~~~~~~~v~p~~~~~g~eLvdve~~~~~~~~~lrV~ID~-~~g--V~-iddC~~vSr~Is~~LD 66 (151)
T PRK14637 5 KKDLGYFSECEPVVEGLGCKLVDLSRRVQQAQGRVRAVIYS-AGG--VG-LDDCARVHRILVPRLE 66 (151)
T ss_pred cccccHHHHHHHHHHhcCCEEEEEEEEecCCCcEEEEEEEC-CCC--CC-HHHHHHHHHHHHHHhc
Confidence 34468888999999999999999999988776543444543 245 43 3778888888777664
No 344
>PRK00907 hypothetical protein; Provisional
Probab=21.57 E-value=3.2e+02 Score=21.35 Aligned_cols=48 Identities=17% Similarity=0.207 Sum_probs=35.9
Q ss_pred cEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEE----EecCCeeeeEEEEE
Q 022480 217 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEI----DTEGLVAKDKFHVS 264 (296)
Q Consensus 217 ~TvleV~t~DRPGLL~dIt~~La~~gv~I~~AkI----~T~G~ra~D~F~V~ 264 (296)
.+.+.|.|.++++|...|..++..+.-......+ +..|.-..=.+.|+
T Consensus 17 ~fpiKVmG~a~~~l~~~V~~vv~~h~p~~~~~~i~~r~Ss~GkY~Svtv~i~ 68 (92)
T PRK00907 17 TFELSAMGTAERGLETELPRLLAATGVELLQERISWKHSSSGKYVSVRIGFR 68 (92)
T ss_pred CCeEEEEEcCchhHHHHHHHHHHHhCCCCCcCcEEeccCCCCEEEEEEEEEE
Confidence 3889999999999999999999988776554444 44555555555554
No 345
>COG3603 Uncharacterized conserved protein [Function unknown]
Probab=21.54 E-value=2.3e+02 Score=23.51 Aligned_cols=39 Identities=13% Similarity=0.129 Sum_probs=31.0
Q ss_pred CCCeEEEEEEeC---CCccHHHHHHHHHHHCCceEEEEEEEE
Q 022480 99 NSDATIVQLSFG---DRLGALIDTMNALKDLGLDVAKGTVNT 137 (296)
Q Consensus 99 ~~~~t~V~V~~~---DrpGLLa~i~~vL~~~glnI~~A~I~T 137 (296)
+.|+..+.+.++ |-+|+|+.+.+.|++.|+-|.--.-+.
T Consensus 60 ~~GW~~lk~~gpf~FgltGilasV~~pLsd~gigIFavStyd 101 (128)
T COG3603 60 EKGWSCLKFEGPFDFGLTGILASVSQPLSDNGIGIFAVSTYD 101 (128)
T ss_pred cCCeEEEEEeccccCCcchhhhhhhhhHhhCCccEEEEEecc
Confidence 457777777765 889999999999999999998644433
No 346
>PRK08961 bifunctional aspartate kinase/diaminopimelate decarboxylase protein; Provisional
Probab=21.19 E-value=3.9e+02 Score=29.10 Aligned_cols=33 Identities=18% Similarity=0.335 Sum_probs=28.4
Q ss_pred CcEEEEEEe---CCCcchHHHHHHHHHhCCceEEEE
Q 022480 216 KRSLLYIET---ADRPGLLVEIMKIIADVNVDVESA 248 (296)
Q Consensus 216 ~~TvleV~t---~DRPGLL~dIt~~La~~gv~I~~A 248 (296)
+-+.|.|.+ .+.+|++++|...|+++||+|...
T Consensus 321 ~v~lItv~~~~~~~~~g~~a~if~~la~~~I~Vd~I 356 (861)
T PRK08961 321 GIVLVSMETIGMWQQVGFLADVFTLFKKHGLSVDLI 356 (861)
T ss_pred CEEEEEEecCCccccccHHHHHHHHHHHcCCeEEEE
Confidence 357888864 478999999999999999999887
No 347
>PRK10738 hypothetical protein; Provisional
Probab=20.29 E-value=2.3e+02 Score=23.39 Aligned_cols=49 Identities=14% Similarity=0.295 Sum_probs=33.2
Q ss_pred HHHHHHHHhCCceEEEEEEEecCCeee------eEEEEEe--CCCCCChHHHHHHHH
Q 022480 232 VEIMKIIADVNVDVESAEIDTEGLVAK------DKFHVSY--GGAALNSSLSQVLVN 280 (296)
Q Consensus 232 ~dIt~~La~~gv~I~~AkI~T~G~ra~------D~F~V~~--~g~~L~~~~~~~L~~ 280 (296)
.++...+...++++...++...|++.. ..+++.. +|..+++++++++.+
T Consensus 50 i~v~~~l~k~~~~~~~~~v~v~~~r~~~~p~~f~~I~~~~~~~g~~l~~e~~~rav~ 106 (134)
T PRK10738 50 IDVVSILQKGRQDVVDCEVKLTSERREEAPRLFTHINLHFIVTGKDLKDAAVARAVD 106 (134)
T ss_pred HHHHHHHHHCCCCcccEEEEEEEEEcccCCCcccEEEEEEEEECCCCCHHHHHHHHH
Confidence 356778889999999999988776543 2345543 676677765444444
No 348
>cd07247 SgaA_N_like N-terminal domain of Streptomyces griseus SgaA (suppression of growth disturbance caused by A-factor at a high concentration under high osmolality during early growth phase), and similar domains. SgaA suppresses the growth disturbances caused by high osmolarity and a high concentration of A-factor, a microbial hormone, during the early growth phase in Streptomyces griseus. A-factor (2-isocapryloyl-3R-hydroxymethyl-gamma-butyrolactone) controls morphological differentiation and secondary metabolism in Streptomyces griseus. It is a chemical signaling molecule that at a very low concentration acts as a switch for yellow pigment production, aerial mycelium formation, streptomycin production, and streptomycin resistance. The structure and amino acid sequence of SgaA are closely related to a group of antibiotics resistance proteins, including bleomycin resistance protein, mitomycin resistance protein, and fosfomycin resistance proteins. SgaA might also function as a strep
Probab=20.26 E-value=3.7e+02 Score=19.97 Aligned_cols=49 Identities=16% Similarity=0.083 Sum_probs=35.2
Q ss_pred CcEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCeeeeEEEEEe-CCCCC
Q 022480 216 KRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSY-GGAAL 270 (296)
Q Consensus 216 ~~TvleV~t~DRPGLL~dIt~~La~~gv~I~~AkI~T~G~ra~D~F~V~~-~g~~L 270 (296)
....+.+...| +....+.|...|+++........ ... ..|++.+ +|..+
T Consensus 61 ~~~~~~f~v~d----i~~~~~~l~~~g~~~~~~~~~~~-~~~-~~~~~~DPdG~~~ 110 (114)
T cd07247 61 PGWLVYFAVDD----VDAAAARVEAAGGKVLVPPTDIP-GVG-RFAVFADPEGAVF 110 (114)
T ss_pred CeEEEEEEeCC----HHHHHHHHHHCCCEEEeCCcccC-CcE-EEEEEECCCCCEE
Confidence 35667777888 77888889999999886644332 222 4799998 88765
No 349
>PLN02704 flavonol synthase
Probab=20.15 E-value=1.1e+02 Score=29.24 Aligned_cols=58 Identities=14% Similarity=0.210 Sum_probs=41.6
Q ss_pred cEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCeeeeEEEEEeCCCCCChHHHHHHHHHHHHHcCCCCCcc
Q 022480 217 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGGAALNSSLSQVLVNCLRYYLRRPETDI 293 (296)
Q Consensus 217 ~TvleV~t~DRPGLL~dIt~~La~~gv~I~~AkI~T~G~ra~D~F~V~~~g~~L~~~~~~~L~~~L~~~l~~~~~~~ 293 (296)
--+|++...|+..++.+|.+++.+.|+ |+|.++| |..+..+++.+..+.....|..++
T Consensus 43 iPvIDls~~~~~~~~~~l~~Ac~~~GF-----------------f~l~nHG--I~~~l~~~~~~~~~~FF~LP~e~K 100 (335)
T PLN02704 43 VPTIDLSDPDEEKLTRLIAEASKEWGM-----------------FQIVNHG--IPSEVISKLQKVGKEFFELPQEEK 100 (335)
T ss_pred CCeEECCCccHHHHHHHHHHHHHHcCE-----------------EEEEcCC--CCHHHHHHHHHHHHHHHcCCHHHH
Confidence 346777767777888999999999986 7785444 445666777777777776666554
Done!