BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022481
(296 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure
Length = 115
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 44/78 (56%)
Query: 202 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN 261
L +A KNG A VKKLLS+G D N K G + LHLAA +I +L+ GA+++ ++
Sbjct: 13 LHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARS 72
Query: 262 AQGESPLDCAPVTLQYKM 279
G +P A +++
Sbjct: 73 KDGNTPEHLAKKNGHHEI 90
Score = 34.7 bits (78), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 31/59 (52%)
Query: 202 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCK 260
L A KNG A VK LL++G D N K G + HLA +I +L GA+++ +
Sbjct: 46 LHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNAR 104
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 53.5 bits (127), Expect = 1e-07, Method: Composition-based stats.
Identities = 27/67 (40%), Positives = 39/67 (58%)
Query: 205 AIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQG 264
A +NG VK LL G D N DK G + LHLAA ++ +L+E+GA+++ K+ G
Sbjct: 9 AARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNG 68
Query: 265 ESPLDCA 271
+PL A
Sbjct: 69 RTPLHLA 75
Score = 42.0 bits (97), Expect = 4e-04, Method: Composition-based stats.
Identities = 22/51 (43%), Positives = 29/51 (56%)
Query: 205 AIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGA 255
A +NG VK LL G D N DK G + LHLAA ++ +L+E+GA
Sbjct: 42 AARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92
Score = 33.9 bits (76), Expect = 0.11, Method: Composition-based stats.
Identities = 15/41 (36%), Positives = 26/41 (63%)
Query: 231 GMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCA 271
G + LHLAA ++ +L+E+GA+++ K+ G +PL A
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLA 42
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 40/70 (57%)
Query: 202 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN 261
L A +NG VK LL G D N DK G + LHLAA ++ +L+E+GA+++ K+
Sbjct: 6 LHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKD 65
Query: 262 AQGESPLDCA 271
G +PL A
Sbjct: 66 KNGRTPLHLA 75
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 40/70 (57%)
Query: 202 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN 261
L A +NG VK LL G D N DK G + LHLAA ++ +L+E+GA+++ K+
Sbjct: 39 LHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKD 98
Query: 262 AQGESPLDCA 271
G +PL A
Sbjct: 99 KNGRTPLHLA 108
Score = 40.8 bits (94), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 30/54 (55%)
Query: 202 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGA 255
L A +NG VK LL G D N DK G + LHLAA ++ +L+E+GA
Sbjct: 72 LHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 125
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 26/41 (63%)
Query: 231 GMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCA 271
G + LHLAA ++ +L+E+GA+++ K+ G +PL A
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLA 42
>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein
pdb|2RFM|B Chain B, Structure Of A Thermophilic Ankyrin Repeat Protein
Length = 192
Score = 50.8 bits (120), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 42/67 (62%)
Query: 205 AIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQG 264
A+KN +KLLS+G + N D G + L + +F +++++ L+E GAN++ +N +G
Sbjct: 75 AVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEG 134
Query: 265 ESPLDCA 271
E+PL A
Sbjct: 135 ETPLIVA 141
Score = 28.5 bits (62), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 32/63 (50%)
Query: 228 DKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDK 287
D +G + L A NR IA L+ G+N++ K+ G++PL + + +M + E
Sbjct: 65 DIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHG 124
Query: 288 NNV 290
NV
Sbjct: 125 ANV 127
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 50.8 bits (120), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 41/72 (56%)
Query: 202 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN 261
L A NG V+ LL G D N D GM+ L LAALF +I +L+++GA+++ +
Sbjct: 51 LHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNAND 110
Query: 262 AQGESPLDCAPV 273
+G +PL A +
Sbjct: 111 MEGHTPLHLAAM 122
Score = 44.3 bits (103), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 41/70 (58%)
Query: 202 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN 261
LR A G V+ LL G D N D +G + LHLAA+F +I +L+++GA+++ ++
Sbjct: 84 LRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQD 143
Query: 262 AQGESPLDCA 271
G++ D +
Sbjct: 144 KFGKTAFDIS 153
Score = 41.2 bits (95), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 42/75 (56%)
Query: 199 GEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMD 258
G+ L +A + G V+ L++ G D N D G + LHLAA +I +L+++GA+++
Sbjct: 15 GKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVN 74
Query: 259 CKNAQGESPLDCAPV 273
+ G +PL A +
Sbjct: 75 AVDHAGMTPLRLAAL 89
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 48/85 (56%)
Query: 199 GEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMD 258
G+ L +A + G V+ L++ G D N D G++ LHLAA+ +I +L++ GA++D
Sbjct: 15 GKKLLEAARAGQDDEVRILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVD 74
Query: 259 CKNAQGESPLDCAPVTLQYKMRQKM 283
+ G +PL A +T ++ + +
Sbjct: 75 AADVYGFTPLHLAAMTGHLEIVEVL 99
Score = 40.8 bits (94), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 37/71 (52%)
Query: 202 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN 261
L A +G V+ LL G D + D G + LHLAA+ +I +L++ GA+++ +
Sbjct: 51 LHLAAVSGHLEIVEVLLKHGADVDAADVYGFTPLHLAAMTGHLEIVEVLLKYGADVNAFD 110
Query: 262 AQGESPLDCAP 272
G +PL A
Sbjct: 111 MTGSTPLHLAA 121
Score = 35.4 bits (80), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 36/70 (51%)
Query: 202 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN 261
L A G V+ LL G D N D G + LHLAA +I +L++ GA+++ ++
Sbjct: 84 LHLAAMTGHLEIVEVLLKYGADVNAFDMTGSTPLHLAADEGHLEIVEVLLKYGADVNAQD 143
Query: 262 AQGESPLDCA 271
G++ D +
Sbjct: 144 KFGKTAFDIS 153
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 42/73 (57%)
Query: 199 GEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMD 258
G+ L +A +NG+ VK LL G D N D G + LHLAA ++ +L+ GA+ +
Sbjct: 5 GKRLIEAAENGNKDRVKDLLENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPN 64
Query: 259 CKNAQGESPLDCA 271
K++ G++PL A
Sbjct: 65 AKDSDGKTPLHLA 77
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 40/70 (57%)
Query: 202 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN 261
L A +NG VK LLS+G D N D G + LHLAA ++ +L+ GA+ + K+
Sbjct: 41 LHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKD 100
Query: 262 AQGESPLDCA 271
+ G++PL A
Sbjct: 101 SDGKTPLHLA 110
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 39/70 (55%)
Query: 202 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN 261
L A +NG VK LLS+G D N D G + LHLAA ++ +L+ GA+ + +
Sbjct: 74 LHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNTSD 133
Query: 262 AQGESPLDCA 271
+ G +PLD A
Sbjct: 134 SDGRTPLDLA 143
Score = 31.2 bits (69), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 28/57 (49%)
Query: 202 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMD 258
L A +NG VK LLS+G D N D G + L LA ++ +L + G ++
Sbjct: 107 LHLAAENGHKEVVKLLLSQGADPNTSDSDGRTPLDLAREHGNEEVVKLLEKQGGWLE 163
>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From
Lactococcal Phage Tp901-1
Length = 136
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 46/70 (65%)
Query: 199 GEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMD 258
G+ L +A + G V+ L++ G D N DK G++ LHLAA+ + +I +L+++GA+++
Sbjct: 15 GKKLLEAARAGQDDEVRILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVN 74
Query: 259 CKNAQGESPL 268
+A GE+PL
Sbjct: 75 AIDAIGETPL 84
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 34/58 (58%)
Query: 214 VKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCA 271
V+ LL G D N D G + LHL A++ +I +L++ GA+++ ++ G++ D +
Sbjct: 63 VEVLLKNGADVNAIDAIGETPLHLVAMYGHLEIVEVLLKHGADVNAQDKFGKTAFDIS 120
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 41/73 (56%)
Query: 199 GEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMD 258
G+ L +A +NG+ VK L+ G D N D G + LH AA +I +L+ GA+++
Sbjct: 5 GKRLIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVN 64
Query: 259 CKNAQGESPLDCA 271
K++ G +PL A
Sbjct: 65 AKDSDGRTPLHYA 77
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 38/70 (54%)
Query: 202 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN 261
L A K G VK L+S+G D N D G + LH AA +I +L+ GA+++ +
Sbjct: 74 LHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNTSD 133
Query: 262 AQGESPLDCA 271
+ G +PLD A
Sbjct: 134 SDGRTPLDLA 143
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 38/70 (54%)
Query: 202 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN 261
L A K G VK L+S+G D N D G + LH AA +I +L+ GA+++ K+
Sbjct: 41 LHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKD 100
Query: 262 AQGESPLDCA 271
+ G +PL A
Sbjct: 101 SDGRTPLHYA 110
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 27/57 (47%)
Query: 202 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMD 258
L A K G VK L+S+G D N D G + L LA +I +L + G ++
Sbjct: 107 LHYAAKEGHKEIVKLLISKGADVNTSDSDGRTPLDLAREHGNEEIVKLLEKQGGWLE 163
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 40/68 (58%), Gaps = 1/68 (1%)
Query: 205 AIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQG 264
AIK G V+ LL G D N DK G + LHLAAL+ +I +L+++GA+++ + G
Sbjct: 55 AIK-GHLEIVEVLLKHGADVNAADKMGDTPLHLAALYGHLEIVEVLLKNGADVNATDTYG 113
Query: 265 ESPLDCAP 272
+PL A
Sbjct: 114 FTPLHLAA 121
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 53/95 (55%)
Query: 199 GEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMD 258
G+ L +A + G V+ L++ G D N D G + LHLAA+ +I +L++ GA+++
Sbjct: 15 GKKLLEAARAGQDDEVRILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVN 74
Query: 259 CKNAQGESPLDCAPVTLQYKMRQKMEEDKNNVGST 293
+ G++PL A + ++ + + ++ +V +T
Sbjct: 75 AADKMGDTPLHLAALYGHLEIVEVLLKNGADVNAT 109
Score = 37.0 bits (84), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 33/58 (56%)
Query: 214 VKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCA 271
V+ LL G D N D G + LHLAA +I +L++ GA+++ ++ G++ D +
Sbjct: 96 VEVLLKNGADVNATDTYGFTPLHLAADAGHLEIVEVLLKYGADVNAQDKFGKTAFDIS 153
>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264.
pdb|4GPM|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264
Length = 169
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 39/70 (55%)
Query: 202 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN 261
L A +NG VK L+S+G D N D G + LH AA ++ +L+ GA+++ +
Sbjct: 74 LHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSD 133
Query: 262 AQGESPLDCA 271
+ G +PLD A
Sbjct: 134 SDGRTPLDLA 143
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 39/70 (55%)
Query: 202 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN 261
L A +NG VK L+S+G D N D G + LH AA ++ +L+ GA+++ K+
Sbjct: 41 LHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKD 100
Query: 262 AQGESPLDCA 271
+ G +PL A
Sbjct: 101 SDGRTPLHHA 110
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 41/73 (56%)
Query: 199 GEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMD 258
G+ L +A +NG+ VK L+ G D N D G + LH AA ++ +L+ GA+++
Sbjct: 5 GKRLIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVN 64
Query: 259 CKNAQGESPLDCA 271
K++ G +PL A
Sbjct: 65 AKDSDGRTPLHHA 77
Score = 31.6 bits (70), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 28/57 (49%)
Query: 202 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMD 258
L A +NG VK L+S+G D N D G + L LA ++ +L + G ++
Sbjct: 107 LHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLAREHGNEEVVKLLEKQGGWLE 163
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 47.8 bits (112), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 42/73 (57%)
Query: 199 GEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMD 258
G+ L +A + G V+ L++ G D N D QG + LHLAA +I +L++ GA+++
Sbjct: 15 GKKLLEAARAGQDDEVRILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVN 74
Query: 259 CKNAQGESPLDCA 271
++ G +PL A
Sbjct: 75 ARDTDGWTPLHLA 87
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 34/58 (58%)
Query: 214 VKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCA 271
V+ LL G D N D G + LHLAA +I +L++ GA+++ ++A G +PL A
Sbjct: 63 VEVLLKHGADVNARDTDGWTPLHLAADNGHLEIVEVLLKYGADVNAQDAYGLTPLHLA 120
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 38/70 (54%)
Query: 202 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN 261
L A NG V+ LL G D N D G++ LHLAA +I +L++ GA+++ ++
Sbjct: 84 LHLAADNGHLEIVEVLLKYGADVNAQDAYGLTPLHLAADRGHLEIVEVLLKHGADVNAQD 143
Query: 262 AQGESPLDCA 271
G++ D +
Sbjct: 144 KFGKTAFDIS 153
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 47.8 bits (112), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 44/74 (59%)
Query: 199 GEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMD 258
G+ L +A + G V+ L++ G D N D G + LHLAA F +I +L+++GA+++
Sbjct: 15 GKKLLEAARAGQDDEVRILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVN 74
Query: 259 CKNAQGESPLDCAP 272
K++ G +PL A
Sbjct: 75 AKDSLGVTPLHLAA 88
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 36/64 (56%)
Query: 209 GDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPL 268
G V+ LL G D N D G++ LHLAA +I +L+++GA+++ ++ G +PL
Sbjct: 58 GHLEIVEVLLKNGADVNAKDSLGVTPLHLAARRGHLEIVEVLLKNGADVNASDSHGFTPL 117
Query: 269 DCAP 272
A
Sbjct: 118 HLAA 121
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 38/70 (54%)
Query: 202 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN 261
L A + G V+ LL G D N D G + LHLAA +I +L+++GA+++ ++
Sbjct: 84 LHLAARRGHLEIVEVLLKNGADVNASDSHGFTPLHLAAKRGHLEIVEVLLKNGADVNAQD 143
Query: 262 AQGESPLDCA 271
G++ D +
Sbjct: 144 KFGKTAFDIS 153
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 47.8 bits (112), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 40/73 (54%)
Query: 199 GEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMD 258
G+ L +A +NG+ VK LL G D N D G + LH AA +I +L+ GA+ +
Sbjct: 5 GKRLIEAAENGNKDRVKDLLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPN 64
Query: 259 CKNAQGESPLDCA 271
K++ G +PL A
Sbjct: 65 AKDSDGRTPLHYA 77
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 38/70 (54%)
Query: 202 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN 261
L A +NG VK LLS+G D N D G + LH AA +I +L+ GA+ + +
Sbjct: 74 LHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNTSD 133
Query: 262 AQGESPLDCA 271
+ G +PLD A
Sbjct: 134 SDGRTPLDLA 143
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 38/70 (54%)
Query: 202 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN 261
L A +NG VK LLS+G D N D G + LH AA +I +L+ GA+ + K+
Sbjct: 41 LHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKD 100
Query: 262 AQGESPLDCA 271
+ G +PL A
Sbjct: 101 SDGRTPLHYA 110
Score = 32.0 bits (71), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 28/57 (49%)
Query: 202 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMD 258
L A +NG VK LLS+G D N D G + L LA +I +L + G ++
Sbjct: 107 LHYAAENGHKEIVKLLLSKGADPNTSDSDGRTPLDLAREHGNEEIVKLLEKQGGWLE 163
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 47.8 bits (112), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 43/74 (58%)
Query: 199 GEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMD 258
G+ L +A + G V+ L++ G D N D G + LHLAA F +I +L+++GA+++
Sbjct: 15 GKKLLEAARAGQDDEVRILMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVN 74
Query: 259 CKNAQGESPLDCAP 272
++ G +PL A
Sbjct: 75 ADDSLGVTPLHLAA 88
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 36/70 (51%)
Query: 202 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN 261
L A G V+ LL G D N D G + LHLAA +I +L++ GA+++ ++
Sbjct: 84 LHLAADRGHLEVVEVLLKNGADVNANDHNGFTPLHLAANIGHLEIVEVLLKHGADVNAQD 143
Query: 262 AQGESPLDCA 271
G++ D +
Sbjct: 144 KFGKTAFDIS 153
Score = 37.4 bits (85), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 35/64 (54%)
Query: 209 GDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPL 268
G V+ LL G D N D G++ LHLAA ++ +L+++GA+++ + G +PL
Sbjct: 58 GHLEIVEVLLKNGADVNADDSLGVTPLHLAADRGHLEVVEVLLKNGADVNANDHNGFTPL 117
Query: 269 DCAP 272
A
Sbjct: 118 HLAA 121
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 47.8 bits (112), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 47/85 (55%)
Query: 199 GEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMD 258
G+ L +A + G V+ L++ G D N D G++ LHLAA + +I +L++ GA+++
Sbjct: 15 GKKLLEAARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVN 74
Query: 259 CKNAQGESPLDCAPVTLQYKMRQKM 283
+ G +PL A + ++ + +
Sbjct: 75 AIDIXGSTPLHLAALIGHLEIVEVL 99
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 38/72 (52%)
Query: 202 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN 261
L A G V+ LL G D N D G + LHLAAL +I +L++ GA+++ +
Sbjct: 51 LHLAATYGHLEIVEVLLKHGADVNAIDIXGSTPLHLAALIGHLEIVEVLLKHGADVNAVD 110
Query: 262 AQGESPLDCAPV 273
G++PL A +
Sbjct: 111 TWGDTPLHLAAI 122
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 35/63 (55%)
Query: 209 GDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPL 268
G V+ LL G D N D G + LHLAA+ +I +L++ GA+++ ++ G++
Sbjct: 91 GHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQDKFGKTAF 150
Query: 269 DCA 271
D +
Sbjct: 151 DIS 153
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 47.8 bits (112), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 47/85 (55%)
Query: 199 GEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMD 258
G+ L +A + G V+ L++ G D N D G++ LHLAA + +I +L++ GA+++
Sbjct: 15 GKKLLEAARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVN 74
Query: 259 CKNAQGESPLDCAPVTLQYKMRQKM 283
+ G +PL A + ++ + +
Sbjct: 75 AIDIMGSTPLHLAALIGHLEIVEVL 99
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 38/72 (52%)
Query: 202 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN 261
L A G V+ LL G D N D G + LHLAAL +I +L++ GA+++ +
Sbjct: 51 LHLAATYGHLEIVEVLLKHGADVNAIDIMGSTPLHLAALIGHLEIVEVLLKHGADVNAVD 110
Query: 262 AQGESPLDCAPV 273
G++PL A +
Sbjct: 111 TWGDTPLHLAAI 122
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 35/63 (55%)
Query: 209 GDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPL 268
G V+ LL G D N D G + LHLAA+ +I +L++ GA+++ ++ G++
Sbjct: 91 GHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQDKFGKTAF 150
Query: 269 DCA 271
D +
Sbjct: 151 DIS 153
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 47.8 bits (112), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 43/73 (58%)
Query: 199 GEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMD 258
G+ L +A + G V+ L++ G D N DK G + LHLAA +I +L+++GA+++
Sbjct: 3 GKKLLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN 62
Query: 259 CKNAQGESPLDCA 271
K+ G +PL A
Sbjct: 63 AKDKDGYTPLHLA 75
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 39/70 (55%)
Query: 202 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN 261
L A + G V+ LL G D N DK G + LHLAA +I +L+++GA+++ K+
Sbjct: 39 LHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKD 98
Query: 262 AQGESPLDCA 271
G +PL A
Sbjct: 99 KDGYTPLHLA 108
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 40/70 (57%)
Query: 202 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN 261
L A + G V+ LL G D N DK G + LHLAA +I +L+++GA+++ ++
Sbjct: 72 LHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQD 131
Query: 262 AQGESPLDCA 271
G++P D A
Sbjct: 132 KFGKTPFDLA 141
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 43/73 (58%)
Query: 199 GEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMD 258
G+ L +A + G V+ L++ G D N DK G + LHLAA +I +L+++GA+++
Sbjct: 3 GKKLLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN 62
Query: 259 CKNAQGESPLDCA 271
K+ G +PL A
Sbjct: 63 AKDKDGYTPLHLA 75
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 39/70 (55%)
Query: 202 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN 261
L A + G V+ LL G D N DK G + LHLAA +I +L+++GA+++ K+
Sbjct: 39 LHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKD 98
Query: 262 AQGESPLDCA 271
G +PL A
Sbjct: 99 KDGYTPLHLA 108
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 40/70 (57%)
Query: 202 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN 261
L A + G V+ LL G D N DK G + LHLAA +I +L+++GA+++ ++
Sbjct: 72 LHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQD 131
Query: 262 AQGESPLDCA 271
G++P D A
Sbjct: 132 KFGKTPFDLA 141
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 43/73 (58%)
Query: 199 GEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMD 258
G+ L +A + G V+ L++ G D N DK G + LHLAA +I +L+++GA+++
Sbjct: 15 GKKLLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN 74
Query: 259 CKNAQGESPLDCA 271
K+ G +PL A
Sbjct: 75 AKDKDGYTPLHLA 87
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 39/70 (55%)
Query: 202 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN 261
L A + G V+ LL G D N DK G + LHLAA +I +L+++GA+++ K+
Sbjct: 51 LHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKD 110
Query: 262 AQGESPLDCA 271
G +PL A
Sbjct: 111 KDGYTPLHLA 120
Score = 40.8 bits (94), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 39/70 (55%)
Query: 202 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN 261
L A + G V+ LL G D N DK G + LHLAA +I +L+++GA+++ ++
Sbjct: 84 LHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQD 143
Query: 262 AQGESPLDCA 271
G++ D +
Sbjct: 144 KFGKTAFDIS 153
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 37/71 (52%)
Query: 202 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN 261
L + NG ++ LL D N DK G + LHLAA +I +L++ GA+++ +
Sbjct: 51 LHLVVNNGHLEIIEVLLKYAADVNASDKSGWTPLHLAAYRGHLEIVEVLLKYGADVNAMD 110
Query: 262 AQGESPLDCAP 272
QG +PL A
Sbjct: 111 YQGYTPLHLAA 121
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 37/70 (52%)
Query: 202 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN 261
L A G V+ LL G D N D QG + LHLAA +I +L++ GA+++ ++
Sbjct: 84 LHLAAYRGHLEIVEVLLKYGADVNAMDYQGYTPLHLAAEDGHLEIVEVLLKYGADVNAQD 143
Query: 262 AQGESPLDCA 271
G++ D +
Sbjct: 144 KFGKTAFDIS 153
Score = 35.0 bits (79), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 38/74 (51%)
Query: 199 GEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMD 258
G+ L +A + G V+ L++ G D N D G++ LHL +I +L++ A+++
Sbjct: 15 GKKLLEAARAGQDDEVRILMANGADVNANDWFGITPLHLVVNNGHLEIIEVLLKYAADVN 74
Query: 259 CKNAQGESPLDCAP 272
+ G +PL A
Sbjct: 75 ASDKSGWTPLHLAA 88
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 44/82 (53%)
Query: 202 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN 261
L A NG V+ LL G D N D G++ LHLAA +I +L++ GA+++ +
Sbjct: 43 LHLAAANGQLEIVEVLLKNGADVNASDSAGITPLHLAAYDGHLEIVEVLLKHGADVNAYD 102
Query: 262 AQGESPLDCAPVTLQYKMRQKM 283
G +PL A ++ Q ++ + +
Sbjct: 103 RAGWTPLHLAALSGQLEIVEVL 124
Score = 44.7 bits (104), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 39/69 (56%)
Query: 202 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN 261
L A +G V+ LL G D N D+ G + LHLAAL + +I +L++ GA+++ ++
Sbjct: 76 LHLAAYDGHLEIVEVLLKHGADVNAYDRAGWTPLHLAALSGQLEIVEVLLKHGADVNAQD 135
Query: 262 AQGESPLDC 270
A G + D
Sbjct: 136 ALGLTAFDI 144
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 43/74 (58%)
Query: 199 GEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMD 258
G+ L +A G V+ L++ G D N D G++ LHLAA + +I +L+++GA+++
Sbjct: 7 GKKLLEAAAAGQDDEVRILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGADVN 66
Query: 259 CKNAQGESPLDCAP 272
++ G +PL A
Sbjct: 67 ASDSAGITPLHLAA 80
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 45/75 (60%)
Query: 199 GEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMD 258
G+ L +A + G V+ L++ G D N D++G + LHLAA ++ +I +L++ GA+++
Sbjct: 15 GKKLLEAARAGQDDEVRILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVN 74
Query: 259 CKNAQGESPLDCAPV 273
+ G +PL A +
Sbjct: 75 AHDNDGSTPLHLAAL 89
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 35/58 (60%)
Query: 214 VKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCA 271
V+ LL G D N D G + LHLAALF +I +L++ GA+++ ++ G++ D +
Sbjct: 63 VEVLLKHGADVNAHDNDGSTPLHLAALFGHLEIVEVLLKHGADVNAQDKFGKTAFDIS 120
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 47/87 (54%)
Query: 199 GEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMD 258
G+ L +A + G V+ L++ G D N D G++ LHLAA +I +L++ GA+++
Sbjct: 15 GKKLLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVN 74
Query: 259 CKNAQGESPLDCAPVTLQYKMRQKMEE 285
++ G +PL A ++ + + E
Sbjct: 75 ARDIWGRTPLHLAATVGHLEIVEVLLE 101
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 37/70 (52%)
Query: 202 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN 261
L A K G V+ LL G D N D G + LHLAA +I +L+E GA+++ ++
Sbjct: 51 LHLAAKRGHLEIVEVLLKHGADVNARDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQD 110
Query: 262 AQGESPLDCA 271
G++ D +
Sbjct: 111 KFGKTAFDIS 120
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 42/74 (56%)
Query: 199 GEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMD 258
G+ L +A + G V+ L++ G D N D G + LHLAA + +I +L+++GA+++
Sbjct: 15 GKKLLEAARAGRDDEVRILMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGADVN 74
Query: 259 CKNAQGESPLDCAP 272
+ G +PL A
Sbjct: 75 AYDTLGSTPLHLAA 88
Score = 44.7 bits (104), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 36/64 (56%)
Query: 209 GDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPL 268
G V+ LL G D N D G + LHLAA F +I +L+++GA+++ K+ G +PL
Sbjct: 58 GHLEIVEVLLKNGADVNAYDTLGSTPLHLAAHFGHLEIVEVLLKNGADVNAKDDNGITPL 117
Query: 269 DCAP 272
A
Sbjct: 118 HLAA 121
Score = 36.6 bits (83), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 35/63 (55%)
Query: 209 GDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPL 268
G V+ LL G D N D G++ LHLAA +I +L++ GA+++ ++ G++
Sbjct: 91 GHLEIVEVLLKNGADVNAKDDNGITPLHLAANRGHLEIVEVLLKYGADVNAQDKFGKTAF 150
Query: 269 DCA 271
D +
Sbjct: 151 DIS 153
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 44/75 (58%)
Query: 199 GEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMD 258
G+ L +A + G V+ L++ G D N D+ G++ LHLAA +I +L++ GA+++
Sbjct: 15 GKKLLEAARAGQDDEVRILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVN 74
Query: 259 CKNAQGESPLDCAPV 273
++ G +PL A +
Sbjct: 75 AEDNFGITPLHLAAI 89
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 39/70 (55%)
Query: 202 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN 261
L A + G V+ LL G D N D G++ LHLAA+ +I +L++ GA+++ ++
Sbjct: 51 LHLAAQLGHLEIVEVLLKYGADVNAEDNFGITPLHLAAIRGHLEIVEVLLKHGADVNAQD 110
Query: 262 AQGESPLDCA 271
G++ D +
Sbjct: 111 KFGKTAFDIS 120
>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|B Chain B, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|C Chain C, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
Length = 240
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 39/76 (51%)
Query: 196 EVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGA 255
++N L A + G + V +L+ G D + D +G S +HLAA F T I L+ G
Sbjct: 74 DLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQ 133
Query: 256 NMDCKNAQGESPLDCA 271
++D + G +PL A
Sbjct: 134 DVDMMDQNGMTPLMWA 149
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Query: 215 KKLLSEGVDANFCDK-QGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCAPV 273
+ LL+ V N DK + LH A L T + +L+E+GAN+D +N +GES LD A
Sbjct: 160 RLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQ 219
Query: 274 TLQYKMRQKMEEDKNNVG 291
M ++E + G
Sbjct: 220 RKNVWMINHLQEARQAKG 237
Score = 34.7 bits (78), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 6/67 (8%)
Query: 215 KKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCAPVT 274
++L+ G D DK+ ++LLH AA+ NR D+ + GA +D Q L+ P
Sbjct: 26 RELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVD----QLGGDLNSTP-- 79
Query: 275 LQYKMRQ 281
L + RQ
Sbjct: 80 LHWATRQ 86
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 47/87 (54%)
Query: 199 GEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMD 258
G+ L +A + G V+ L++ G D N D G++ LHLAA +I +L++ GA+++
Sbjct: 15 GKKLLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVN 74
Query: 259 CKNAQGESPLDCAPVTLQYKMRQKMEE 285
++ G +PL A ++ + + E
Sbjct: 75 ASDSWGRTPLHLAATVGHLEIVEVLLE 101
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 37/70 (52%)
Query: 202 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN 261
L A K G V+ LL G D N D G + LHLAA +I +L+E GA+++ ++
Sbjct: 51 LHLAAKRGHLEIVEVLLKHGADVNASDSWGRTPLHLAATVGHLEIVEVLLEYGADVNAQD 110
Query: 262 AQGESPLDCA 271
G++ D +
Sbjct: 111 KFGKTAFDIS 120
>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And
The Myosin Phosphatase Targeting Subunit 1 (mypt1)
Length = 299
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 36/63 (57%)
Query: 209 GDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPL 268
GD V +LL G D N+ + G++ LH A + + D+ L+E+GAN++ + +G PL
Sbjct: 51 GDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPL 110
Query: 269 DCA 271
A
Sbjct: 111 HAA 113
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 32/57 (56%)
Query: 214 VKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDC 270
VK L+ G + N D +G LH AA DIA L+ GA++ N++G++PLD
Sbjct: 89 VKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDI 145
Score = 35.4 bits (80), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 34/73 (46%)
Query: 199 GEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMD 258
G L A G +K L+ D N D G + LH AA + + + IL+E+ +M+
Sbjct: 200 GTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDME 259
Query: 259 CKNAQGESPLDCA 271
N G++ D A
Sbjct: 260 AVNKVGQTAFDVA 272
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 39/74 (52%)
Query: 199 GEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMD 258
G L +A + G V+ L++ G D N D G + LHLAA +I +L++ GA++D
Sbjct: 15 GRKLLEAARAGQDDEVRILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVD 74
Query: 259 CKNAQGESPLDCAP 272
+ G +PL A
Sbjct: 75 ASDVFGYTPLHLAA 88
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 39/71 (54%)
Query: 202 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN 261
L A +G V+ LL G D + D G + LHLAA + +I +L+++GA+++ +
Sbjct: 51 LHLAAYSGHLEIVEVLLKHGADVDASDVFGYTPLHLAAYWGHLEIVEVLLKNGADVNAMD 110
Query: 262 AQGESPLDCAP 272
+ G +PL A
Sbjct: 111 SDGMTPLHLAA 121
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 38/70 (54%)
Query: 202 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN 261
L A G V+ LL G D N D GM+ LHLAA + +I +L++ GA+++ ++
Sbjct: 84 LHLAAYWGHLEIVEVLLKNGADVNAMDSDGMTPLHLAAKWGYLEIVEVLLKHGADVNAQD 143
Query: 262 AQGESPLDCA 271
G++ D +
Sbjct: 144 KFGKTAFDIS 153
>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4
Length = 136
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 46/87 (52%)
Query: 199 GEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMD 258
G+ L +A + G V+ L++ G D N D G++ LHLAA +I +L++ GA+++
Sbjct: 15 GKKLLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVN 74
Query: 259 CKNAQGESPLDCAPVTLQYKMRQKMEE 285
+ G +PL A ++ + + E
Sbjct: 75 ASDIWGRTPLHLAATVGHLEIVEVLLE 101
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 37/70 (52%)
Query: 202 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN 261
L A K G V+ LL G D N D G + LHLAA +I +L+E GA+++ ++
Sbjct: 51 LHLAAKRGHLEIVEVLLKHGADVNASDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQD 110
Query: 262 AQGESPLDCA 271
G++ D +
Sbjct: 111 KFGKTAFDIS 120
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 38/71 (53%)
Query: 202 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN 261
L A K G V+ LL G D N D G + LHLAA +I +L++ GA+++ K+
Sbjct: 51 LHLAAKTGHLEIVEVLLKYGADVNAWDNYGATPLHLAADNGHLEIVEVLLKHGADVNAKD 110
Query: 262 AQGESPLDCAP 272
+G +PL A
Sbjct: 111 YEGFTPLHLAA 121
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 38/70 (54%)
Query: 202 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN 261
L A NG V+ LL G D N D +G + LHLAA +I +L++ GA+++ ++
Sbjct: 84 LHLAADNGHLEIVEVLLKHGADVNAKDYEGFTPLHLAAYDGHLEIVEVLLKYGADVNAQD 143
Query: 262 AQGESPLDCA 271
G++ D +
Sbjct: 144 KFGKTAFDIS 153
Score = 41.2 bits (95), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 40/74 (54%)
Query: 199 GEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMD 258
G+ L +A + G V+ L++ G D N D G + LHLAA +I +L++ GA+++
Sbjct: 15 GKKLLEAARAGQDDEVRILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGADVN 74
Query: 259 CKNAQGESPLDCAP 272
+ G +PL A
Sbjct: 75 AWDNYGATPLHLAA 88
>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 91
Score = 44.7 bits (104), Expect = 6e-05, Method: Composition-based stats.
Identities = 23/71 (32%), Positives = 42/71 (59%)
Query: 199 GEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMD 258
G+ L +A + G V+ L++ G D N DK G + LHLAA +I +L+++GA+++
Sbjct: 3 GKKLLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN 62
Query: 259 CKNAQGESPLD 269
++ G++ D
Sbjct: 63 AQDKFGKTAFD 73
>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin
Length = 227
Score = 44.7 bits (104), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 45/97 (46%), Gaps = 9/97 (9%)
Query: 202 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN 261
L A G VK LL +G N ++ G + LH AA NR +IA +L+E GAN D K+
Sbjct: 78 LHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKD 137
Query: 262 ---------AQGESPLDCAPVTLQYKMRQKMEEDKNN 289
A + L + L YK +++ + N
Sbjct: 138 HYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGN 174
Score = 36.2 bits (82), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 33/70 (47%)
Query: 202 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN 261
L A G V+ LL GV N D G S LH+AA R +I L+ GA ++ N
Sbjct: 45 LHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVN 104
Query: 262 AQGESPLDCA 271
G +PL A
Sbjct: 105 QNGCTPLHYA 114
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 46/102 (45%), Gaps = 2/102 (1%)
Query: 183 VTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFN 242
+ GA + YE + A G+ + LL N D +G + LHLA
Sbjct: 127 LEGGANPDAKDHYEATA--MHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEE 184
Query: 243 RTDIAFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKME 284
R + A +L+ GA++ +N + ++PL A L +++ +E
Sbjct: 185 RVEEAKLLVSQGASIYIENKEEKTPLQVAKGGLGLILKRMVE 226
>pdb|1UOH|A Chain A, Human Gankyrin
pdb|1TR4|A Chain A, Solution Structure Of Human Oncogenic Protein Gankyrin
Length = 226
Score = 44.7 bits (104), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 45/97 (46%), Gaps = 9/97 (9%)
Query: 202 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN 261
L A G VK LL +G N ++ G + LH AA NR +IA +L+E GAN D K+
Sbjct: 77 LHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKD 136
Query: 262 ---------AQGESPLDCAPVTLQYKMRQKMEEDKNN 289
A + L + L YK +++ + N
Sbjct: 137 HYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGN 173
Score = 36.2 bits (82), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 33/70 (47%)
Query: 202 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN 261
L A G V+ LL GV N D G S LH+AA R +I L+ GA ++ N
Sbjct: 44 LHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVN 103
Query: 262 AQGESPLDCA 271
G +PL A
Sbjct: 104 QNGCTPLHYA 113
Score = 33.5 bits (75), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 46/102 (45%), Gaps = 2/102 (1%)
Query: 183 VTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFN 242
+ GA + YE + A G+ + LL N D +G + LHLA
Sbjct: 126 LEGGANPDAKDHYEATA--MHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEE 183
Query: 243 RTDIAFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKME 284
R + A +L+ GA++ +N + ++PL A L +++ +E
Sbjct: 184 RVEEAKLLVSQGASIYIENKEEKTPLQVAKGGLGLILKRMVE 225
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 44.7 bits (104), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 37/71 (52%)
Query: 202 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN 261
L A NG V+ LL G D N D G++ LHLAA +I +L++ GA+++ +
Sbjct: 51 LHLAASNGHLEIVEVLLKNGADVNASDLTGITPLHLAAATGHLEIVEVLLKHGADVNAYD 110
Query: 262 AQGESPLDCAP 272
G +PL A
Sbjct: 111 NDGHTPLHLAA 121
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 46/85 (54%)
Query: 199 GEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMD 258
G+ L +A + G V+ L++ G D N D G + LHLAA +I +L+++GA+++
Sbjct: 15 GKKLLEAARAGQDDEVRILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVN 74
Query: 259 CKNAQGESPLDCAPVTLQYKMRQKM 283
+ G +PL A T ++ + +
Sbjct: 75 ASDLTGITPLHLAAATGHLEIVEVL 99
Score = 40.8 bits (94), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 37/70 (52%)
Query: 202 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN 261
L A G V+ LL G D N D G + LHLAA + +I +L++ GA+++ ++
Sbjct: 84 LHLAAATGHLEIVEVLLKHGADVNAYDNDGHTPLHLAAKYGHLEIVEVLLKHGADVNAQD 143
Query: 262 AQGESPLDCA 271
G++ D +
Sbjct: 144 KFGKTAFDIS 153
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 154
Score = 44.3 bits (103), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 34/59 (57%)
Query: 214 VKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCAP 272
V+ LL G D N D G + LHLAA +I +L++ GA+++ K+A G +PL A
Sbjct: 51 VEVLLRNGADVNAVDTNGTTPLHLAASLGHLEIVEVLLKYGADVNAKDATGITPLYLAA 109
Score = 44.3 bits (103), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 41/74 (55%)
Query: 199 GEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMD 258
G+ L +A + G V+ L++ G DAN D G + LH+AA +I +L+ +GA+++
Sbjct: 3 GKKLLEAARAGQDDEVRILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVN 62
Query: 259 CKNAQGESPLDCAP 272
+ G +PL A
Sbjct: 63 AVDTNGTTPLHLAA 76
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 34/57 (59%)
Query: 214 VKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDC 270
V+ LL G D N D G++ L+LAA + +I +L++ GA+++ ++ G++ D
Sbjct: 84 VEVLLKYGADVNAKDATGITPLYLAAYWGHLEIVEVLLKHGADVNAQDKFGKTAFDI 140
>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
pdb|4GRG|B Chain B, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
Length = 135
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 40/74 (54%)
Query: 199 GEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMD 258
G+ L +A + G V+ L + G D N D G + LHLAA+ +I +L+++GA+++
Sbjct: 15 GKKLLEAARAGQDDEVRILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVN 74
Query: 259 CKNAQGESPLDCAP 272
G +PL A
Sbjct: 75 ATGNTGRTPLHLAA 88
Score = 35.8 bits (81), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 33/58 (56%)
Query: 214 VKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCA 271
V+ LL G D N G + LHLAA + +I +L++ GA+++ ++ G++ D +
Sbjct: 63 VEVLLKNGADVNATGNTGRTPLHLAAWADHLEIVEVLLKHGADVNAQDKFGKTAFDIS 120
>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|C Chain C, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 231
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 45/97 (46%), Gaps = 9/97 (9%)
Query: 202 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN 261
L A G VK LL +G N ++ G + LH AA NR +IA +L+E GAN D K+
Sbjct: 77 LHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKD 136
Query: 262 ---------AQGESPLDCAPVTLQYKMRQKMEEDKNN 289
A + L + L YK +++ + N
Sbjct: 137 HYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGN 173
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 33/70 (47%)
Query: 202 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN 261
L A G V+ LL GV N D G S LH+AA +I L+ GA+++ N
Sbjct: 44 LHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVN 103
Query: 262 AQGESPLDCA 271
G +PL A
Sbjct: 104 QNGCTPLHYA 113
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 38/83 (45%)
Query: 202 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN 261
+ A G+ V LL N D +G + LHLA R + A L+ GA++ +N
Sbjct: 143 MHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIEN 202
Query: 262 AQGESPLDCAPVTLQYKMRQKME 284
+ ++PL A L +++ E
Sbjct: 203 KEEKTPLQVAKGGLGLILKRLAE 225
>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|B Chain B, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|C Chain C, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
Length = 136
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 46/89 (51%), Gaps = 2/89 (2%)
Query: 183 VTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFN 242
+ NGA + EY + L A +G V+ LL G D N D G + LHLAA
Sbjct: 34 MANGADVNAKDEYGLTP--LYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIG 91
Query: 243 RTDIAFILMESGANMDCKNAQGESPLDCA 271
+IA +L++ GA+++ ++ G++ D +
Sbjct: 92 HLEIAEVLLKHGADVNAQDKFGKTAFDIS 120
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 43/74 (58%)
Query: 199 GEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMD 258
G+ L +A + G V+ L++ G D N D+ G++ L+LA +I +L+++GA+++
Sbjct: 15 GKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVN 74
Query: 259 CKNAQGESPLDCAP 272
+A G +PL A
Sbjct: 75 AVDAIGFTPLHLAA 88
>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|C Chain C, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
Length = 231
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 45/97 (46%), Gaps = 9/97 (9%)
Query: 202 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN 261
L A G VK LL +G N ++ G + LH AA NR +IA +L+E GAN D K+
Sbjct: 77 LHIAASAGRDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKD 136
Query: 262 ---------AQGESPLDCAPVTLQYKMRQKMEEDKNN 289
A + L + L YK +++ + N
Sbjct: 137 HYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGN 173
Score = 36.6 bits (83), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 34/70 (48%)
Query: 202 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN 261
L A G V+ LL GV N D G S LH+AA R +I L+ GA+++ N
Sbjct: 44 LHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLVKGAHVNAVN 103
Query: 262 AQGESPLDCA 271
G +PL A
Sbjct: 104 QNGCTPLHYA 113
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 38/83 (45%)
Query: 202 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN 261
+ A G+ V LL N D +G + LHLA R + A L+ GA++ +N
Sbjct: 143 MHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIEN 202
Query: 262 AQGESPLDCAPVTLQYKMRQKME 284
+ ++PL A L +++ E
Sbjct: 203 KEEKTPLQVAKGGLGLILKRLAE 225
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 46/95 (48%)
Query: 202 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN 261
L A + G A V LLS+ + N +K G++ LHL A +A +L++ G +D
Sbjct: 249 LHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATT 308
Query: 262 AQGESPLDCAPVTLQYKMRQKMEEDKNNVGSTTSV 296
G +PL A K+ + + + + +V + T +
Sbjct: 309 RMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKL 343
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 36/70 (51%)
Query: 202 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN 261
L A G+ VK LL D N K G S LH AA TDI +L+++GA+ + +
Sbjct: 315 LHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVS 374
Query: 262 AQGESPLDCA 271
+ G +PL A
Sbjct: 375 SDGTTPLAIA 384
Score = 37.4 bits (85), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 39/81 (48%)
Query: 209 GDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPL 268
G VK LL G N + + + LH+AA T++A L+++ A ++ K ++PL
Sbjct: 25 GHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPL 84
Query: 269 DCAPVTLQYKMRQKMEEDKNN 289
CA M + + E+ N
Sbjct: 85 HCAARIGHTNMVKLLLENNAN 105
Score = 36.6 bits (83), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 37/70 (52%)
Query: 202 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN 261
L A+ + + VK LL G + G + LH+AA N+ ++A L++ G + + ++
Sbjct: 183 LHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAES 242
Query: 262 AQGESPLDCA 271
QG +PL A
Sbjct: 243 VQGVTPLHLA 252
Score = 35.8 bits (81), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 31/69 (44%)
Query: 202 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN 261
L A K + LL G AN QG++ LHLAA ++ +L+ AN + N
Sbjct: 216 LHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGN 275
Query: 262 AQGESPLDC 270
G +PL
Sbjct: 276 KSGLTPLHL 284
Score = 34.7 bits (78), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 29/70 (41%)
Query: 202 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN 261
L A K G + LL N K G++ LH+A N DI +L+ G +
Sbjct: 150 LHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPA 209
Query: 262 AQGESPLDCA 271
G +PL A
Sbjct: 210 WNGYTPLHIA 219
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 33/70 (47%)
Query: 202 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN 261
L A + G V LL + K+G + LH+AA + + +A +L+E A+ +
Sbjct: 117 LHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAG 176
Query: 262 AQGESPLDCA 271
G +PL A
Sbjct: 177 KNGLTPLHVA 186
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 29/67 (43%)
Query: 205 AIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQG 264
A + G VK LL + N G + LH+AA + L+E A+ C +G
Sbjct: 87 AARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKG 146
Query: 265 ESPLDCA 271
+PL A
Sbjct: 147 FTPLHVA 153
Score = 32.7 bits (73), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 30/70 (42%)
Query: 202 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN 261
L A + G K LL N K + LH AA T++ +L+E+ AN +
Sbjct: 51 LHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLAT 110
Query: 262 AQGESPLDCA 271
G +PL A
Sbjct: 111 TAGHTPLHIA 120
Score = 31.6 bits (70), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 17/70 (24%), Positives = 31/70 (44%)
Query: 202 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN 261
L + G L+ GV + + G + LH+A+ + + L++ A+++ K
Sbjct: 282 LHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKT 341
Query: 262 AQGESPLDCA 271
G SPL A
Sbjct: 342 KLGYSPLHQA 351
>pdb|3ZKJ|A Chain A, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
pdb|3ZKJ|D Chain D, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
Length = 261
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Query: 199 GEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMD 258
G L A +N A VKKLL G D N Q S LH A ++A +LM+ GA+
Sbjct: 135 GTPLYLACENQQRACVKKLLESGADVNQGKGQD-SPLHAVARTASEELACLLMDFGADTQ 193
Query: 259 CKNAQGESPLDCAP 272
KNA+G+ P++ P
Sbjct: 194 AKNAEGKRPVELVP 207
>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 92
Score = 42.4 bits (98), Expect = 3e-04, Method: Composition-based stats.
Identities = 22/71 (30%), Positives = 41/71 (57%)
Query: 199 GEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMD 258
G+ L +A + G V+ L++ G D DK G + LHLAA ++ +L+E+GA+++
Sbjct: 7 GKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVN 66
Query: 259 CKNAQGESPLD 269
++ G++ D
Sbjct: 67 AQDKFGKTAFD 77
>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat
Domain In Complex With Pinch1 Lim1 Domain
pdb|3IXE|A Chain A, Structural Basis Of Competition Between Pinch1 And Pinch2
For Binding To The Ankyrin Repeat Domain Of
Integrin-Linked Kinase
Length = 179
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 44/89 (49%)
Query: 202 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN 261
L A +G V+KLL D N ++ G LH A + + +A L+ +GA + N
Sbjct: 76 LHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICN 135
Query: 262 AQGESPLDCAPVTLQYKMRQKMEEDKNNV 290
GE P+D A L+ +R++ E+ N+
Sbjct: 136 KYGEMPVDKAKAPLRELLRERAEKMGQNL 164
Score = 34.3 bits (77), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
Query: 207 KNGDAAAVKKLLSEGV-DANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGE 265
+ G+A AV+ L D N D G S LH A R+ + +L+ GA ++ N +
Sbjct: 14 REGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDD 73
Query: 266 SPLDCAPVTLQYKMRQKMEEDKNNVGST 293
+PL A + QK+ + K ++ +
Sbjct: 74 TPLHLAASHGHRDIVQKLLQYKADINAV 101
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 41.2 bits (95), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 41/74 (55%)
Query: 199 GEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMD 258
G+ L +A + G V+ L++ G D N D G + LHLAA +I +L+++GA+++
Sbjct: 15 GKKLLEAARAGQDDEVRILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVN 74
Query: 259 CKNAQGESPLDCAP 272
+ G +PL A
Sbjct: 75 ALDFSGSTPLHLAA 88
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 37/73 (50%)
Query: 202 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN 261
L A + G V+ LL G D N D G + LHLAA +I +L++ GA+++ +
Sbjct: 51 LHLAARVGHLEIVEVLLKNGADVNALDFSGSTPLHLAAKRGHLEIVEVLLKYGADVNADD 110
Query: 262 AQGESPLDCAPVT 274
G +PL A T
Sbjct: 111 TIGSTPLHLAADT 123
Score = 36.6 bits (83), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 37/70 (52%)
Query: 202 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN 261
L A K G V+ LL G D N D G + LHLAA +I +L++ GA+++ ++
Sbjct: 84 LHLAAKRGHLEIVEVLLKYGADVNADDTIGSTPLHLAADTGHLEIVEVLLKYGADVNAQD 143
Query: 262 AQGESPLDCA 271
G++ D +
Sbjct: 144 KFGKTAFDIS 153
>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B7B|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B95|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
pdb|3B95|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
Length = 237
Score = 40.8 bits (94), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 33/64 (51%)
Query: 214 VKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCAPV 273
VK LLS+G D N D + LH AA DIA IL+ + ++ N G+SPL A
Sbjct: 127 VKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAAR 186
Query: 274 TLQY 277
+Y
Sbjct: 187 ENRY 190
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 33/60 (55%)
Query: 217 LLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCAPVTLQ 276
LL+ D + + G S LH+AA NR D + + +++ KN +GE+PL CA + Q
Sbjct: 163 LLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQ 222
Score = 32.3 bits (72), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 202 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESG-ANMDCK 260
L +A +N AVK L+ G + D +G + LHLAA ++ L+ +G +++C+
Sbjct: 48 LMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQ 107
Query: 261 NAQGESPLDCA 271
+ G +P+ A
Sbjct: 108 DDGGWTPMIWA 118
Score = 28.5 bits (62), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 43/92 (46%)
Query: 192 RMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILM 251
+ME++ L A + G L+ G + + C + + L AA N + L+
Sbjct: 5 KMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLI 64
Query: 252 ESGANMDCKNAQGESPLDCAPVTLQYKMRQKM 283
++GA +D K+A+G + L A Y++ Q +
Sbjct: 65 KAGALVDPKDAEGSTCLHLAAKKGHYEVVQYL 96
>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex
Length = 171
Score = 40.8 bits (94), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 44/89 (49%)
Query: 202 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN 261
L A +G V+KLL D N ++ G LH A + + +A L+ +GA + N
Sbjct: 71 LHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICN 130
Query: 262 AQGESPLDCAPVTLQYKMRQKMEEDKNNV 290
GE P+D A L+ +R++ E+ N+
Sbjct: 131 KYGEMPVDKAKAPLRELLRERAEKMGQNL 159
Score = 33.5 bits (75), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 41/89 (46%), Gaps = 1/89 (1%)
Query: 207 KNGDAAAVKKLLSEGV-DANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGE 265
+ G+A AV+ L D N D G S LH A R+ + +L+ GA ++ N +
Sbjct: 9 REGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDD 68
Query: 266 SPLDCAPVTLQYKMRQKMEEDKNNVGSTT 294
+PL A + QK+ + K ++ +
Sbjct: 69 TPLHLAASHGHRDIVQKLLQYKADINAVN 97
>pdb|3D9H|A Chain A, Crystal Structure Of The Splice Variant Of Human Asb9
(Hasb9-2), An Ankyrin Repeat Protein
Length = 285
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Query: 199 GEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMD 258
G L A +N A VKKLL G D N Q S LH ++A +LM+ GA+
Sbjct: 191 GTPLYLACENQQRACVKKLLESGADVNQGKGQD-SPLHAVVRTASEELACLLMDFGADTQ 249
Query: 259 CKNAQGESPLDCAP 272
KNA+G+ P++ P
Sbjct: 250 AKNAEGKRPVELVP 263
>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8K|B Chain B, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8L|A Chain A, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|B Chain B, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|C Chain C, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|D Chain D, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
Length = 337
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 49/94 (52%), Gaps = 9/94 (9%)
Query: 202 LRDAIKNGDAAAVKKLLSE-GVDANFCDKQGM-SLLHLAALFNRTD-----IAFILMESG 254
L DA + G +K LL E G D N CD G +L+H AL + D I +L++ G
Sbjct: 172 LMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIH--ALLSSDDSDVEAITHLLLDHG 229
Query: 255 ANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKN 288
A+++ + +G++PL A + Q++ E ++
Sbjct: 230 ADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEH 263
Score = 32.0 bits (71), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 26/52 (50%)
Query: 209 GDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCK 260
G +K LS+G D N CD G + AA++ + L + GAN++ +
Sbjct: 103 GSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLR 154
>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin
Repeat Domain Of Varp
Length = 269
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 32/58 (55%)
Query: 214 VKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCA 271
+ K+ + G+ N + G S LH+AAL R D+ +L++ GAN +NA PL A
Sbjct: 69 LAKVPASGLGVNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLA 126
Score = 31.2 bits (69), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 30/67 (44%)
Query: 205 AIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQG 264
A G V LL G N + +G + LH A + + +L+ GA++ N +
Sbjct: 159 ACSGGHHELVALLLQHGASINASNNKGNTALHEAVIEKHVFVVELLLLHGASVQVLNKRQ 218
Query: 265 ESPLDCA 271
+ +DCA
Sbjct: 219 RTAVDCA 225
>pdb|1YCS|B Chain B, P53-53bp2 Complex
Length = 239
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 39/70 (55%)
Query: 202 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN 261
L D+ G+ V++++ E D + + +G++ LH A T+I L++ G N++ +
Sbjct: 41 LLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAAD 100
Query: 262 AQGESPLDCA 271
+ G +PL CA
Sbjct: 101 SDGWTPLHCA 110
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 36/73 (49%), Gaps = 9/73 (12%)
Query: 192 RMEYEV------NGEG---LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFN 242
R+ YEV N EG L +A+ G VK L+ GV+ N D G + LH AA N
Sbjct: 55 RIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCN 114
Query: 243 RTDIAFILMESGA 255
+ L+ESGA
Sbjct: 115 NVQVCKFLVESGA 127
>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|D Chain D, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|F Chain F, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|H Chain H, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|J Chain J, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|L Chain L, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
Length = 239
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 39/70 (55%)
Query: 202 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN 261
L D+ G+ V++++ E D + + +G++ LH A T+I L++ G N++ +
Sbjct: 41 LLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAAD 100
Query: 262 AQGESPLDCA 271
+ G +PL CA
Sbjct: 101 SDGWTPLHCA 110
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 36/73 (49%), Gaps = 9/73 (12%)
Query: 192 RMEYEV------NGEG---LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFN 242
R+ YEV N EG L +A+ G VK L+ GV+ N D G + LH AA N
Sbjct: 55 RIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCN 114
Query: 243 RTDIAFILMESGA 255
+ L+ESGA
Sbjct: 115 NVQVCKFLVESGA 127
>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease
Length = 285
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 49/94 (52%), Gaps = 9/94 (9%)
Query: 202 LRDAIKNGDAAAVKKLLSE-GVDANFCDKQGM-SLLHLAALFNRTD-----IAFILMESG 254
L DA + G +K LL E G D N CD G +L+H AL + D I +L++ G
Sbjct: 152 LMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIH--ALLSSDDSDVEAITHLLLDHG 209
Query: 255 ANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKN 288
A+++ + +G++PL A + Q++ E ++
Sbjct: 210 ADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEH 243
Score = 31.2 bits (69), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 26/52 (50%)
Query: 209 GDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCK 260
G +K LS+G D N CD G + AA++ + L + GAN++ +
Sbjct: 83 GSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLR 134
>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution.
pdb|2F8Y|B Chain B, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution
Length = 223
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 38/65 (58%), Gaps = 2/65 (3%)
Query: 209 GDA-AAVKKLLSEGVDA-NFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGES 266
GDA A + + +G N D+ G + LHLAA ++R+D A L+E+ A+ + ++ G +
Sbjct: 1 GDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRT 60
Query: 267 PLDCA 271
PL A
Sbjct: 61 PLHAA 65
Score = 32.0 bits (71), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 34/58 (58%)
Query: 214 VKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCA 271
++ L++ D N D G S LH AA N D A +L+++GAN D +N + E+PL A
Sbjct: 108 LEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLA 165
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 213 AVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGA-NMDCKNAQGESPLDCA 271
A K+LL DAN D G + LH A + + IL+ + A ++D + G +PL A
Sbjct: 40 AAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILA 99
>pdb|3JUE|A Chain A, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
pdb|3JUE|B Chain B, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
Length = 368
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 29/55 (52%)
Query: 217 LLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCA 271
LL G + N D G LH A + T +A + ++ GA++ ++++G PL A
Sbjct: 254 LLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIA 308
>pdb|4F1P|A Chain A, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
pdb|4F1P|B Chain B, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
Length = 368
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 29/55 (52%)
Query: 217 LLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCA 271
LL G + N D G LH A + T +A + ++ GA++ ++++G PL A
Sbjct: 254 LLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIA 308
>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex
pdb|3UTM|B Chain B, Crystal Structure Of A Mouse Tankyrase-Axin Complex
Length = 351
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 44/86 (51%), Gaps = 5/86 (5%)
Query: 190 KPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGM-SLLH--LAALF-NRTD 245
+ R+ YE G L A + D A VKK L+ + NF Q + LH +A+L R
Sbjct: 170 RERLTYEFKGHSLLQAAREADLAKVKKTLALEI-INFKQPQSHETALHCAVASLHPKRKQ 228
Query: 246 IAFILMESGANMDCKNAQGESPLDCA 271
+A +L+ GAN++ KN +PL A
Sbjct: 229 VAELLLRKGANVNEKNKDFMTPLHVA 254
Score = 36.2 bits (82), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 42/77 (54%), Gaps = 1/77 (1%)
Query: 196 EVNGEGLRDAIKNGDAAAVKKLLSE-GVDANFCDKQGMSLLHLAALFNRTDIAFILMESG 254
E + L +A ++G+ + LL+ V+ + D + + LHLAA +NR I +L++ G
Sbjct: 22 EYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHG 81
Query: 255 ANMDCKNAQGESPLDCA 271
A++ K+ G PL A
Sbjct: 82 ADVHAKDKGGLVPLHNA 98
Score = 35.4 bits (80), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 33/71 (46%)
Query: 202 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN 261
L +A G + LL G N D + LH AA NR ++ +L+ GA+ N
Sbjct: 95 LHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVN 154
Query: 262 AQGESPLDCAP 272
G+S +D AP
Sbjct: 155 CHGKSAVDMAP 165
>pdb|3T9K|A Chain A, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
pdb|3T9K|B Chain B, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
Length = 390
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 29/55 (52%)
Query: 217 LLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCA 271
LL G + N D G LH A + T +A + ++ GA++ ++++G PL A
Sbjct: 254 LLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIA 308
>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|B Chain B, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|C Chain C, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
Length = 239
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 33/65 (50%)
Query: 214 VKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCAPV 273
V+ L++ D N D G + LH AA N T+ IL+ AN D ++ + E+PL A
Sbjct: 134 VEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAAR 193
Query: 274 TLQYK 278
Y+
Sbjct: 194 EGSYE 198
Score = 32.3 bits (72), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 47/87 (54%), Gaps = 6/87 (6%)
Query: 191 PRMEYEVNGEGL---RDAIKNGDAAA--VKKLLSEGVDANFC-DKQGMSLLHLAALFNRT 244
P M V G GL D N D+ A + LL++G + N DK G + LHLAA F R
Sbjct: 5 PLMIAAVRGGGLDTGEDIENNEDSTAQVISDLLAQGAELNATMDKTGETSLHLAARFARA 64
Query: 245 DIAFILMESGANMDCKNAQGESPLDCA 271
D A L+++GA+ + ++ G +PL A
Sbjct: 65 DAAKRLLDAGADANSQDNTGRTPLHAA 91
>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
pdb|2HE0|B Chain B, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
Length = 253
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 30/47 (63%)
Query: 225 NFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCA 271
N D+ G + LHLAA ++R+D A L+E+ A+ + ++ G +PL A
Sbjct: 51 NQTDRTGATALHLAAAYSRSDAAKRLLEASADANIQDNMGRTPLHAA 97
Score = 32.0 bits (71), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 36/65 (55%)
Query: 214 VKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCAPV 273
++ L++ D N D G S LH AA N D A +L+++GAN D +N + E+PL A
Sbjct: 140 LEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAR 199
Query: 274 TLQYK 278
Y+
Sbjct: 200 EGSYE 204
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 213 AVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGA-NMDCKNAQGESPLDCA 271
A K+LL DAN D G + LH A + + IL+ + A ++D + G +PL A
Sbjct: 72 AAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILA 131
>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On
Hes-1 Promoter Dna Sequence
pdb|3NBN|B Chain B, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3NBN|E Chain E, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3V79|K Chain K, Structure Of Human Notch1 Transcription Complex Including
Csl, Ram, Ank, And Maml-1 On Hes-1 Promoter Dna Sequence
Length = 256
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 212 AAVKKLLSEGVDA-NFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDC 270
A + + +G N D+ G + LHLAA ++R+D A L+E+ A+ + ++ G +PL
Sbjct: 38 AVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHA 97
Query: 271 A 271
A
Sbjct: 98 A 98
Score = 32.3 bits (72), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 36/65 (55%)
Query: 214 VKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCAPV 273
++ L++ D N D G S LH AA N D A +L+++GAN D +N + E+PL A
Sbjct: 141 LEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAR 200
Query: 274 TLQYK 278
Y+
Sbjct: 201 EGSYE 205
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 213 AVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGA-NMDCKNAQGESPLDCA 271
A K+LL DAN D G + LH A + + IL+ + A ++D + G +PL A
Sbjct: 73 AAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILA 132
>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain
pdb|1YYH|B Chain B, Crystal Structure Of The Human Notch 1 Ankyrin Domain
Length = 253
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 212 AAVKKLLSEGVDA-NFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDC 270
A + + +G N D+ G + LHLAA ++R+D A L+E+ A+ + ++ G +PL
Sbjct: 37 AVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHA 96
Query: 271 A 271
A
Sbjct: 97 A 97
Score = 32.3 bits (72), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 36/65 (55%)
Query: 214 VKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCAPV 273
++ L++ D N D G S LH AA N D A +L+++GAN D +N + E+PL A
Sbjct: 140 LEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAR 199
Query: 274 TLQYK 278
Y+
Sbjct: 200 EGSYE 204
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 213 AVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGA-NMDCKNAQGESPLDCA 271
A K+LL DAN D G + LH A + + IL+ + A ++D + G +PL A
Sbjct: 72 AAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILA 131
>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 110
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 41/73 (56%)
Query: 199 GEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMD 258
G+ L +A + G V+ L++ G D DK G + LHLAA ++ +L+E+GA++
Sbjct: 25 GKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVX 84
Query: 259 CKNAQGESPLDCA 271
++ G++ D +
Sbjct: 85 AQDKFGKTAFDIS 97
>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1
Length = 167
Score = 37.0 bits (84), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 202 LRDAIKNGDAAAVKKLLS-EGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCK 260
L +A K GD VKKL + + V+ + + + LH AA +NR + L++ GA++ K
Sbjct: 14 LLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAK 73
Query: 261 NAQGESPLDCAPVTLQYKMRQKM 283
+ G PL A Y++ + +
Sbjct: 74 DKGGLVPLHNACSYGHYEVAELL 96
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 32/68 (47%)
Query: 202 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN 261
L +A G + L+ G N D + LH AA + +I +L++ GA+ KN
Sbjct: 81 LHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKN 140
Query: 262 AQGESPLD 269
G +PLD
Sbjct: 141 RDGNTPLD 148
>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWS|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWT|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWV|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWW|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWW|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWX|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
pdb|3TWX|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
Length = 165
Score = 37.0 bits (84), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 202 LRDAIKNGDAAAVKKLLS-EGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCK 260
L +A K GD VKKL + + V+ + + + LH AA +NR + L++ GA++ K
Sbjct: 12 LLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAK 71
Query: 261 NAQGESPLDCAPVTLQYKMRQKM 283
+ G PL A Y++ + +
Sbjct: 72 DKGGLVPLHNACSYGHYEVAELL 94
Score = 33.5 bits (75), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 32/68 (47%)
Query: 202 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN 261
L +A G + L+ G N D + LH AA + +I +L++ GA+ KN
Sbjct: 79 LHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKN 138
Query: 262 AQGESPLD 269
G +PLD
Sbjct: 139 RDGNTPLD 146
>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
pdb|2QC9|B Chain B, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
Length = 210
Score = 37.0 bits (84), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 29/47 (61%)
Query: 225 NFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCA 271
N D+ G + LHLAA ++R+D A L+E+ A+ ++ G +PL A
Sbjct: 16 NQTDRTGETALHLAARYSRSDAAKRLLEASADAXIQDNMGRTPLHAA 62
Score = 31.6 bits (70), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 34/58 (58%)
Query: 214 VKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCA 271
++ L++ D N D G S LH AA N D A +L+++GAN D +N + E+PL A
Sbjct: 105 LEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNKEETPLFLA 162
>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
pdb|3TWQ|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
Length = 175
Score = 36.6 bits (83), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 202 LRDAIKNGDAAAVKKLLS-EGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCK 260
L +A K GD VKKL + + V+ + + + LH AA +NR + L++ GA++ K
Sbjct: 16 LLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAK 75
Query: 261 NAQGESPLDCAPVTLQYKMRQKM 283
+ G PL A Y++ + +
Sbjct: 76 DKGGLVPLHNACSYGHYEVAELL 98
Score = 33.1 bits (74), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 32/68 (47%)
Query: 202 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN 261
L +A G + L+ G N D + LH AA + +I +L++ GA+ KN
Sbjct: 83 LHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKN 142
Query: 262 AQGESPLD 269
G +PLD
Sbjct: 143 RDGNTPLD 150
>pdb|3UI2|A Chain A, Crystal Structure Of The Cpsrp54 Tail Bound To Cpsrp43
Length = 244
Score = 36.6 bits (83), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 40/63 (63%), Gaps = 2/63 (3%)
Query: 216 KLLSE-GVDANFCD-KQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCAPV 273
+LL+E G D + D + G++ LH+AA + R ++ L+E GA+++ ++ +G + L+ A
Sbjct: 94 RLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELARE 153
Query: 274 TLQ 276
L+
Sbjct: 154 ILK 156
>pdb|2VGE|A Chain A, Crystal Structure Of The C-Terminal Region Of Human Iaspp
Length = 229
Score = 36.2 bits (82), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 38/70 (54%)
Query: 202 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN 261
L DA G+ V++ + E D + +++G++ LH A I L+ +GAN++ +
Sbjct: 25 LLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSPD 84
Query: 262 AQGESPLDCA 271
+ G +PL CA
Sbjct: 85 SHGWTPLHCA 94
>pdb|3DEO|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
pdb|3DEP|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
Length = 183
Score = 35.8 bits (81), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 40/63 (63%), Gaps = 2/63 (3%)
Query: 216 KLLSE-GVDANFCD-KQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCAPV 273
+LL+E G D + D + G++ LH+AA + R ++ L+E GA+++ ++ +G + L+ A
Sbjct: 93 RLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELARE 152
Query: 274 TLQ 276
L+
Sbjct: 153 ILK 155
>pdb|1VFY|A Chain A, Phosphatidylinositol-3-Phosphate Binding Fyve Domain Of
Vps27p Protein From Saccharomyces Cerevisiae
Length = 73
Score = 35.4 bits (80), Expect = 0.035, Method: Composition-based stats.
Identities = 19/63 (30%), Positives = 27/63 (42%)
Query: 2 SIEPPAFQEATRCDVCKCSFNTFXXXXXXXXXXXXXXXEHSSDQMTLPQFGIHTNVRVCA 61
S P + ++ C +C F+ EHSS+ + LP GI+ VRVC
Sbjct: 2 SKTPADWIDSDACMICSKKFSLLNRKHHCRSCGGVFCQEHSSNSIPLPDLGIYEPVRVCD 61
Query: 62 DCF 64
CF
Sbjct: 62 SCF 64
>pdb|3LJN|A Chain A, Ankyrin Repeat Protein From Leishmania Major
Length = 364
Score = 35.4 bits (80), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
Query: 225 NFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPL----DCAPVTLQYKMR 280
++ +KQG S LH A L N D+A +E G +++ ++ + PL A V L ++
Sbjct: 205 DYANKQGNSHLHWAILINWEDVAXRFVEXGIDVNXEDNEHTVPLYLSVRAAXVLLTKELL 264
Query: 281 QK 282
QK
Sbjct: 265 QK 266
>pdb|3ZYQ|A Chain A, Crystal Structure Of The Tandem Vhs And Fyve Domains Of
Hepatocyte Growth Factor-Regulated Tyrosine Kinase
Substrate (Hgs-Hrs) At 1.48 A Resolution
pdb|4AVX|A Chain A, Hepatocyte Growth Factor-Regulated Tyrosine Kinase
Substrate (Hgs-Hrs) Bound To An Ip2 Compound At 1.68 A
Resolution
Length = 226
Score = 35.0 bits (79), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 26/64 (40%)
Query: 6 PAFQEATRCDVCKCSFNTFXXXXXXXXXXXXXXXEHSSDQMTLPQFGIHTNVRVCADCFN 65
P + +A C C+ F + SS T+P+FGI VRVC C+
Sbjct: 159 PDWVDAEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSKYSTIPKFGIEKEVRVCEPCYE 218
Query: 66 SSSR 69
+R
Sbjct: 219 QLNR 222
>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Rfxank
Length = 172
Score = 34.3 bits (77), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 32/63 (50%)
Query: 209 GDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPL 268
G+ V+ LL G D + K+ S L LA+ TDI +L+E +++ + G +PL
Sbjct: 47 GEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPL 106
Query: 269 DCA 271
A
Sbjct: 107 LYA 109
Score = 32.0 bits (71), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
Query: 214 VKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCAPV 273
V LL VD N D G + L A N L+ GA++ + G +P+D A V
Sbjct: 85 VGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLA-V 143
Query: 274 TLQYKMRQKMEED 286
L Y+ Q++ E+
Sbjct: 144 ALGYRKVQQVIEN 156
>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank
Length = 172
Score = 33.9 bits (76), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 32/63 (50%)
Query: 209 GDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPL 268
G+ V+ LL G D + K+ S L LA+ TDI +L+E +++ + G +PL
Sbjct: 47 GEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPL 106
Query: 269 DCA 271
A
Sbjct: 107 LYA 109
Score = 31.6 bits (70), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
Query: 214 VKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCAPV 273
V LL VD N D G + L A N L+ GA++ + G +P+D A V
Sbjct: 85 VGLLLERDVDINIYDWNGGTPLLYAVHGNHVKCVEALLARGADLTTEADSGYTPMDLA-V 143
Query: 274 TLQYKMRQKMEED 286
L Y+ Q++ E+
Sbjct: 144 ALGYRKVQQVIEN 156
>pdb|3AAA|C Chain C, Crystal Structure Of Actin Capping Protein In Complex With
V-1
Length = 123
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 34/64 (53%)
Query: 205 AIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQG 264
A+KNGD VK +++G D N + G LH AA + +I L+ GA+++ +
Sbjct: 14 ALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHH 73
Query: 265 ESPL 268
+PL
Sbjct: 74 ITPL 77
>pdb|1MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, 44 Structures
pdb|2MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, Minimized Average
Structure
pdb|2KXP|C Chain C, Solution Nmr Structure Of V-1 Bound To Capping Protein
(Cp)
Length = 118
Score = 33.5 bits (75), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 34/64 (53%)
Query: 205 AIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQG 264
A+KNGD VK +++G D N + G LH AA + +I L+ GA+++ +
Sbjct: 9 ALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHH 68
Query: 265 ESPL 268
+PL
Sbjct: 69 ITPL 72
>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
pdb|3C5R|B Chain B, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
Length = 137
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 30/63 (47%)
Query: 209 GDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPL 268
GD +V+ LL G D N D G + LH A + +L++ A ++ Q +SPL
Sbjct: 21 GDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDSPL 80
Query: 269 DCA 271
A
Sbjct: 81 HDA 83
Score = 31.2 bits (69), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 30/68 (44%)
Query: 202 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN 261
L +A +G V+ LL N Q S LH AA DI +L+ GA+ + N
Sbjct: 47 LHEACNHGHLKVVELLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVN 106
Query: 262 AQGESPLD 269
G P+D
Sbjct: 107 IFGLRPVD 114
>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA
Length = 153
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 31/66 (46%), Gaps = 5/66 (7%)
Query: 202 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMD--- 258
L A G A V+ LL G D N D M+ LH A N ++ +L++ GA++
Sbjct: 71 LHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQS 130
Query: 259 --CKNA 262
CK A
Sbjct: 131 KFCKTA 136
Score = 30.8 bits (68), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 3/74 (4%)
Query: 199 GEGLRDAIKNGDAAAVKKLLSEGVDANFC-DKQGMSLLHLAALFNRTDIAFILMESGANM 257
G+ L +A + G V+ L++ G A F D G S LHLAA + +L+ +G +
Sbjct: 3 GKKLLEAARAGQDDEVRILMANG--APFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSR 60
Query: 258 DCKNAQGESPLDCA 271
D + +PL A
Sbjct: 61 DARTKVDRTPLHMA 74
>pdb|2RFA|A Chain A, Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat Domain
Length = 232
Score = 33.1 bits (74), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 39/78 (50%), Gaps = 6/78 (7%)
Query: 202 LRDAIKNGDAAAVKKLLS-EGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGAN---- 256
L A K D A+ KLL EG + + G + LH+AAL++ + A +LME+
Sbjct: 7 LLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFE 66
Query: 257 -MDCKNAQGESPLDCAPV 273
M + +G++ L A +
Sbjct: 67 PMTSELYEGQTALHIAVI 84
>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d
Length = 156
Score = 32.7 bits (73), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 3/71 (4%)
Query: 202 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTD-IAFILMESGANMDCK 260
+ DA + G +K L+ G D N D G +HLA T ++F+ ES ++ +
Sbjct: 72 VHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAES--DLHRR 129
Query: 261 NAQGESPLDCA 271
+A+G +PL+ A
Sbjct: 130 DARGLTPLELA 140
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
Query: 199 GEGLRDAIKNGDAAAVKKLLS-EGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANM 257
G+ L A GD V++LL E V + ++ G + L + +F T IA L++ GA+
Sbjct: 3 GDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVM-MFGSTAIALELLKQGASP 61
Query: 258 DCKNAQGESPLDCAPVT 274
+ ++ G SP+ A T
Sbjct: 62 NVQDTSGTSPVHDAART 78
>pdb|3SO8|A Chain A, Crystal Structure Of Ankra
Length = 162
Score = 32.7 bits (73), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Query: 214 VKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCAPV 273
VK LL GVD N D G + L A N +L+ESGA+ + G + +D A V
Sbjct: 83 VKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLA-V 141
Query: 274 TLQYKMRQKMEE 285
L Y+ Q++ E
Sbjct: 142 ALGYRSVQQVIE 153
Score = 31.2 bits (69), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 33/70 (47%)
Query: 202 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN 261
L A +G A V+ LL G D K S L LA TDI +L++ G +++ +
Sbjct: 38 LMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYD 97
Query: 262 AQGESPLDCA 271
G +PL A
Sbjct: 98 WNGGTPLLYA 107
>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
pdb|1K1A|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
Length = 241
Score = 32.7 bits (73), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 33/70 (47%)
Query: 202 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN 261
L A++N + V+ LL G + N G S LH A+ + L+ SGA+ KN
Sbjct: 154 LIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKN 213
Query: 262 AQGESPLDCA 271
++PL A
Sbjct: 214 CHNDTPLMVA 223
Score = 28.1 bits (61), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Query: 214 VKKLLSEGVDANFCD-KQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCA 271
V+ LL G D + D K G S L A N + +L++ GAN++ + G S L A
Sbjct: 132 VQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSA 190
>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
pdb|3V31|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 167
Score = 32.7 bits (73), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Query: 214 VKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCAPV 273
VK LL GVD N D G + L A N +L+ESGA+ + G + +D A V
Sbjct: 85 VKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLA-V 143
Query: 274 TLQYKMRQKMEE 285
L Y+ Q++ E
Sbjct: 144 ALGYRSVQQVIE 155
Score = 31.2 bits (69), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 33/70 (47%)
Query: 202 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN 261
L A +G A V+ LL G D K S L LA TDI +L++ G +++ +
Sbjct: 40 LMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYD 99
Query: 262 AQGESPLDCA 271
G +PL A
Sbjct: 100 WNGGTPLLYA 109
>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex
Length = 236
Score = 32.3 bits (72), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Query: 202 LRDAIKNGDAAAVKKLLSEGVDANFCDK-QGMSLLHLAALFNRTDIAFILMESGANMDCK 260
L A +G V+ L+S G D N + G + LHLA D+ +L++ GA+++
Sbjct: 121 LHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRV 180
Query: 261 NAQGESP 267
QG SP
Sbjct: 181 TYQGYSP 187
Score = 29.3 bits (64), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 28/47 (59%)
Query: 225 NFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCA 271
NF + + LHLA + N+ +IA L+ +G + + ++ +G +PL A
Sbjct: 39 NFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLA 85
>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
pdb|1BI8|D Chain D, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
Length = 166
Score = 32.3 bits (72), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 3/71 (4%)
Query: 202 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTD-IAFILMESGANMDCK 260
+ DA + G +K L+ G D N D G +HLA T ++F+ ES ++ +
Sbjct: 78 VHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAES--DLHRR 135
Query: 261 NAQGESPLDCA 271
+A+G +PL+ A
Sbjct: 136 DARGLTPLELA 146
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
Query: 199 GEGLRDAIKNGDAAAVKKLLS-EGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANM 257
G+ L A GD V++LL E V + ++ G + L + +F T IA L++ GA+
Sbjct: 9 GDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVM-MFGSTAIALELLKQGASP 67
Query: 258 DCKNAQGESPLDCAPVT 274
+ ++ G SP+ A T
Sbjct: 68 NVQDTSGTSPVHDAART 84
>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q)
pdb|1MX4|B Chain B, Structure Of P18ink4c (F82q)
Length = 168
Score = 32.3 bits (72), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 36/66 (54%)
Query: 206 IKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGE 265
+K G+ ++LL G + + D+ G +++H AA + D L+E A+++ ++ +G
Sbjct: 45 MKLGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGQLDTLQTLLEFQADVNIEDNEGN 104
Query: 266 SPLDCA 271
PL A
Sbjct: 105 LPLHLA 110
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 46/96 (47%), Gaps = 3/96 (3%)
Query: 202 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIA-FILMESGANMDCK 260
+ DA + G ++ LL D N D +G LHLAA + F++ + +N+ +
Sbjct: 74 IHDAARAGQLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHR 133
Query: 261 NAQGESPLDCAPVTLQYKMRQKMEEDKNNVGSTTSV 296
N +G++ D A + + ++ M+ N G T++
Sbjct: 134 NHKGDTACDLARLYGRNEVVSLMQ--ANGAGGATNL 167
>pdb|1BI7|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structure Of The Cdk6-P16ink4a Tumor Suppressor
Complex
Length = 156
Score = 32.3 bits (72), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Query: 209 GDAAAVKKLLSEGVDANFCDKQGMSL-LHLAALFNRTDIAFILMESGANMDCKNAQGESP 267
G A + LL G + N D ++ +H AA D +L +GA +D ++A G P
Sbjct: 55 GSARVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLP 114
Query: 268 LDCA 271
+D A
Sbjct: 115 VDLA 118
>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex
pdb|1NFI|F Chain F, I-Kappa-B-AlphaNF-Kappa-B Complex
Length = 213
Score = 32.3 bits (72), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Query: 202 LRDAIKNGDAAAVKKLLSEGVDANFCDK-QGMSLLHLAALFNRTDIAFILMESGANMDCK 260
L A +G V+ L+S G D N + G + LHLA D+ +L++ GA+++
Sbjct: 118 LHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRV 177
Query: 261 NAQGESP 267
QG SP
Sbjct: 178 TYQGYSP 184
Score = 28.9 bits (63), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 28/47 (59%)
Query: 225 NFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCA 271
NF + + LHLA + N+ +IA L+ +G + + ++ +G +PL A
Sbjct: 36 NFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLA 82
>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 183
Score = 32.3 bits (72), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Query: 214 VKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCAPV 273
VK LL GVD N D G + L A N +L+ESGA+ + G + +D A V
Sbjct: 101 VKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLA-V 159
Query: 274 TLQYKMRQKMEE 285
L Y+ Q++ E
Sbjct: 160 ALGYRSVQQVIE 171
Score = 31.2 bits (69), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 33/70 (47%)
Query: 202 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN 261
L A +G A V+ LL G D K S L LA TDI +L++ G +++ +
Sbjct: 56 LMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYD 115
Query: 262 AQGESPLDCA 271
G +PL A
Sbjct: 116 WNGGTPLLYA 125
>pdb|1DC2|A Chain A, Solution Nmr Structure Of Tumor Suppressor P16ink4a, 20
Structures
pdb|1A5E|A Chain A, Solution Nmr Structure Of Tumor Suppressor P16ink4a, 18
Structures
pdb|2A5E|A Chain A, Solution Nmr Structure Of Tumor Suppressor P16ink4a,
Restrained Minimized Mean Structure
Length = 156
Score = 32.3 bits (72), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Query: 209 GDAAAVKKLLSEGVDANFCDKQGMSL-LHLAALFNRTDIAFILMESGANMDCKNAQGESP 267
G A + LL G + N D ++ +H AA D +L +GA +D ++A G P
Sbjct: 55 GSARVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLP 114
Query: 268 LDCA 271
+D A
Sbjct: 115 VDLA 118
>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n)
pdb|1MX6|B Chain B, Structure Of P18ink4c (F92n)
Length = 168
Score = 32.0 bits (71), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 36/66 (54%)
Query: 206 IKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGE 265
+K G+ ++LL G + + D+ G +++H AA D L+E+ A+++ ++ +G
Sbjct: 45 MKLGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLENQADVNIEDNEGN 104
Query: 266 SPLDCA 271
PL A
Sbjct: 105 LPLHLA 110
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 46/96 (47%), Gaps = 3/96 (3%)
Query: 202 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIA-FILMESGANMDCK 260
+ DA + G ++ LL D N D +G LHLAA + F++ + +N+ +
Sbjct: 74 IHDAARAGFLDTLQTLLENQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHR 133
Query: 261 NAQGESPLDCAPVTLQYKMRQKMEEDKNNVGSTTSV 296
N +G++ D A + + ++ M+ N G T++
Sbjct: 134 NHKGDTACDLARLYGRNEVVSLMQ--ANGAGGATNL 167
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 31.6 bits (70), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Query: 222 VDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCA 271
+DA D G + LH AAL+N+ D +L++ A + N GE+ LD A
Sbjct: 200 LDAKAAD--GNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIA 247
>pdb|1YMP|A Chain A, The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin
Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold
pdb|1YMP|B Chain B, The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin
Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold
Length = 135
Score = 31.2 bits (69), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 34/58 (58%)
Query: 214 VKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCA 271
++ L++ D N D G S LH AA N D A +L+++GAN D +N + E+PL A
Sbjct: 31 LEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNKEETPLFLA 88
>pdb|2B0O|E Chain E, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|F Chain F, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|G Chain G, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|H Chain H, Crystal Structure Of Uplc1 Gap Domain
Length = 301
Score = 31.2 bits (69), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Query: 222 VDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCA 271
+DA D G + LH AAL+N+ D +L++ A + N GE+ LD A
Sbjct: 219 LDAKAAD--GNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIA 266
>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6)
pdb|1IHB|B Chain B, Crystal Structure Of P18-Ink4c(Ink6)
Length = 162
Score = 31.2 bits (69), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 35/66 (53%)
Query: 206 IKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGE 265
+K G+ ++LL G + + D+ G +++H AA D L+E A+++ ++ +G
Sbjct: 45 MKLGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGN 104
Query: 266 SPLDCA 271
PL A
Sbjct: 105 LPLHLA 110
Score = 28.9 bits (63), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
Query: 202 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIA-FILMESGANMDCK 260
+ DA + G ++ LL D N D +G LHLAA + F++ + +N+ +
Sbjct: 74 IHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHR 133
Query: 261 NAQGESPLDCAPV 273
N +G++ D A +
Sbjct: 134 NHKGDTACDLARL 146
>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures
pdb|1G3N|B Chain B, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
pdb|1G3N|F Chain F, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
Length = 168
Score = 31.2 bits (69), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 35/66 (53%)
Query: 206 IKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGE 265
+K G+ ++LL G + + D+ G +++H AA D L+E A+++ ++ +G
Sbjct: 45 MKLGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGN 104
Query: 266 SPLDCA 271
PL A
Sbjct: 105 LPLHLA 110
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 46/96 (47%), Gaps = 3/96 (3%)
Query: 202 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIA-FILMESGANMDCK 260
+ DA + G ++ LL D N D +G LHLAA + F++ + +N+ +
Sbjct: 74 IHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHR 133
Query: 261 NAQGESPLDCAPVTLQYKMRQKMEEDKNNVGSTTSV 296
N +G++ D A + + ++ M+ N G T++
Sbjct: 134 NHKGDTACDLARLYGRNEVVSLMQ--ANGAGGATNL 167
>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures
Length = 168
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 3/71 (4%)
Query: 202 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTD-IAFILMESGANMDCK 260
+ DA + G +K L+ G D N D G +HLA + ++F+ ES ++ +
Sbjct: 80 VHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGHSSVVSFLAPES--DLHHR 137
Query: 261 NAQGESPLDCA 271
+A G +PL+ A
Sbjct: 138 DASGLTPLELA 148
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 51/102 (50%), Gaps = 5/102 (4%)
Query: 199 GEGLRDAIKNGDAAAVKKLLS-EGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANM 257
G+ L A GD V++LL E V + ++ G + L + +F +A L++ GA+
Sbjct: 11 GDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVM-MFGSPAVALELLKQGASP 69
Query: 258 DCKNAQGESPL-DCAPVTLQYKMRQKMEE--DKNNVGSTTSV 296
+ ++A G SP+ D A ++ +E D N + ST S+
Sbjct: 70 NVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSL 111
>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX
Length = 166
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 3/71 (4%)
Query: 202 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTD-IAFILMESGANMDCK 260
+ DA + G +K L+ G D N D G +HLA + ++F+ ES ++ +
Sbjct: 78 VHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGHSSVVSFLAPES--DLHHR 135
Query: 261 NAQGESPLDCA 271
+A G +PL+ A
Sbjct: 136 DASGLTPLELA 146
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 51/102 (50%), Gaps = 5/102 (4%)
Query: 199 GEGLRDAIKNGDAAAVKKLLS-EGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANM 257
G+ L A GD V++LL E V + ++ G + L + +F +A L++ GA+
Sbjct: 9 GDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVM-MFGSPAVALELLKQGASP 67
Query: 258 DCKNAQGESPL-DCAPVTLQYKMRQKMEE--DKNNVGSTTSV 296
+ ++A G SP+ D A ++ +E D N + ST S+
Sbjct: 68 NVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSL 109
>pdb|1DVP|A Chain A, Crystal Structure Of The Vhs And Fyve Tandem Domains Of
Hrs, A Protein Involved In Membrane Trafficking And
Signal Transduction
Length = 220
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 42 SSDQMTLPQFGIHTNVRVCADCFNSSSR 69
++ Q LP++GI VRVC CF + R
Sbjct: 192 TAKQCPLPKYGIEKEVRVCDGCFAALQR 219
>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c
pdb|1MX2|B Chain B, Structure Of F71n Mutant Of P18ink4c
Length = 168
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 35/66 (53%)
Query: 206 IKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGE 265
+K G+ ++LL G + + D+ G +++H AA D L+E A+++ ++ +G
Sbjct: 45 MKLGNPEIARRLLLRGANPDLKDRTGNAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGN 104
Query: 266 SPLDCA 271
PL A
Sbjct: 105 LPLHLA 110
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 46/96 (47%), Gaps = 3/96 (3%)
Query: 202 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIA-FILMESGANMDCK 260
+ DA + G ++ LL D N D +G LHLAA + F++ + +N+ +
Sbjct: 74 IHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHR 133
Query: 261 NAQGESPLDCAPVTLQYKMRQKMEEDKNNVGSTTSV 296
N +G++ D A + + ++ M+ N G T++
Sbjct: 134 NHKGDTACDLARLYGRNEVVSLMQ--ANGAGGATNL 167
>pdb|1OY3|D Chain D, Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer Complex
Length = 282
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
Query: 202 LRDAIKNGDAAAVKKLLSEGVDANFCDKQ-GMSLLHLAALFNRTDIAFILMESGANMDCK 260
L A+ + DA V+ L G D N + G + LHLA + +L+++GA+ +
Sbjct: 162 LHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTAR 221
Query: 261 NAQGESPLDCA 271
G +PL A
Sbjct: 222 MYGGRTPLGSA 232
>pdb|1K3Z|D Chain D, X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodimer
Complex
Length = 282
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
Query: 202 LRDAIKNGDAAAVKKLLSEGVDANFCDKQ-GMSLLHLAALFNRTDIAFILMESGANMDCK 260
L A+ + DA V+ L G D N + G + LHLA + +L+++GA+ +
Sbjct: 162 LHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTAR 221
Query: 261 NAQGESPLDCA 271
G +PL A
Sbjct: 222 MYGGRTPLGSA 232
>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|E Chain E, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
Length = 228
Score = 28.5 bits (62), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Query: 209 GDAAAVKKLLSEGV--DANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGES 266
G+ VK L + D N QG++ LHLA +++ L+E+GA++ K+ +
Sbjct: 83 GNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQI 142
Query: 267 PLDCA 271
PL A
Sbjct: 143 PLHRA 147
>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein
Gankyrin, An Interactor Of Rb And Cdk46
Length = 231
Score = 28.5 bits (62), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Query: 209 GDAAAVKKLLSEGV--DANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGES 266
G+ VK L + D N QG++ LHLA +++ L+E+GA++ K+ +
Sbjct: 83 GNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQI 142
Query: 267 PLDCA 271
PL A
Sbjct: 143 PLHRA 147
>pdb|1D9S|A Chain A, Tumor Suppressor P15(Ink4b) Structure By Comparative
Modeling And Nmr Data
Length = 136
Score = 28.5 bits (62), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Query: 209 GDAAAVKKLLSEGVDANFCDKQGMSL-LHLAALFNRTDIAFILMESGANMDCKNAQGESP 267
G A + LL G + N D ++ +H AA D +L +GA +D +A G P
Sbjct: 55 GSAQVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLP 114
Query: 268 LDCA 271
+D A
Sbjct: 115 VDLA 118
>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two
Different Crystal Forms
Length = 243
Score = 28.5 bits (62), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Query: 209 GDAAAVKKLLSEGV--DANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGES 266
G+ VK L + D N QG++ LHLA +++ L+E+GA++ K+ +
Sbjct: 83 GNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQI 142
Query: 267 PLDCA 271
PL A
Sbjct: 143 PLHRA 147
>pdb|1DCQ|A Chain A, Crystal Structure Of The Arf-Gap Domain And Ankyrin
Repeats Of Papbeta
Length = 278
Score = 28.1 bits (61), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
Query: 228 DKQ---GMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCA 271
DKQ G + LH L + + +L+ A+++ N GE+PLD A
Sbjct: 199 DKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIA 245
>pdb|3HRA|A Chain A, Crystal Structure Of Ef0377 An Ankyrin Repeat Protein
Length = 201
Score = 28.1 bits (61), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 36/79 (45%), Gaps = 6/79 (7%)
Query: 199 GEGLRDAIKNGDAAAVKKLLSEGV-DANFCDKQGMSLLHLAALFNR-----TDIAFILME 252
G L A + G VK LL +G D +F + G + L A DI +LME
Sbjct: 107 GNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLME 166
Query: 253 SGANMDCKNAQGESPLDCA 271
+GA+ K+ G + +D A
Sbjct: 167 NGADQSIKDNSGRTAMDYA 185
Score = 28.1 bits (61), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 40/74 (54%), Gaps = 3/74 (4%)
Query: 195 YEVNGEGLRDAIKNGDAAAVKKLLSEG-VDANFCDKQGMSLLHLAALFNRTDIAFILMES 253
YEV L +A D VK++L + + D +G + L++A N +IA L++
Sbjct: 4 YEVGA--LLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDR 61
Query: 254 GANMDCKNAQGESP 267
GA+++ +N+ +SP
Sbjct: 62 GADINLQNSISDSP 75
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.127 0.371
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,441,903
Number of Sequences: 62578
Number of extensions: 253601
Number of successful extensions: 702
Number of sequences better than 100.0: 111
Number of HSP's better than 100.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 356
Number of HSP's gapped (non-prelim): 327
length of query: 296
length of database: 14,973,337
effective HSP length: 98
effective length of query: 198
effective length of database: 8,840,693
effective search space: 1750457214
effective search space used: 1750457214
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 51 (24.3 bits)