Query 022481
Match_columns 296
No_of_seqs 523 out of 3065
Neff 9.0
Searched_HMMs 46136
Date Fri Mar 29 03:52:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022481.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022481hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4412 26S proteasome regulat 99.9 8.2E-25 1.8E-29 173.0 8.0 123 166-295 46-170 (226)
2 KOG4412 26S proteasome regulat 99.9 4.2E-24 9E-29 169.1 7.2 128 161-295 75-203 (226)
3 PF12796 Ank_2: Ankyrin repeat 99.9 3E-21 6.5E-26 141.0 11.3 89 202-294 1-89 (89)
4 PHA02743 Viral ankyrin protein 99.8 4.4E-21 9.6E-26 156.6 10.3 116 173-295 39-159 (166)
5 PHA02791 ankyrin-like protein; 99.8 3.5E-21 7.6E-26 169.5 10.1 119 169-295 105-225 (284)
6 KOG0509 Ankyrin repeat and DHH 99.8 1.7E-21 3.7E-26 180.2 8.2 125 164-295 50-176 (600)
7 KOG0509 Ankyrin repeat and DHH 99.8 3.9E-21 8.5E-26 177.9 7.9 122 167-294 87-208 (600)
8 PHA02859 ankyrin repeat protei 99.8 2.3E-20 5E-25 158.0 11.4 120 169-295 64-190 (209)
9 KOG0508 Ankyrin repeat protein 99.8 2.1E-21 4.5E-26 173.6 4.4 124 162-292 88-211 (615)
10 PF01363 FYVE: FYVE zinc finge 99.8 1.1E-21 2.3E-26 136.3 1.9 65 4-68 2-68 (69)
11 PHA02791 ankyrin-like protein; 99.8 2.9E-20 6.2E-25 163.7 11.0 116 165-289 37-153 (284)
12 KOG0502 Integral membrane anky 99.8 2.9E-20 6.3E-25 151.6 9.4 106 182-294 151-256 (296)
13 PHA02878 ankyrin repeat protei 99.8 4.2E-20 9.2E-25 175.2 11.6 116 172-294 148-265 (477)
14 PHA02875 ankyrin repeat protei 99.8 7.1E-20 1.5E-24 170.5 10.3 117 169-292 113-230 (413)
15 PLN03192 Voltage-dependent pot 99.8 6.2E-20 1.3E-24 184.2 10.1 129 160-295 527-686 (823)
16 PHA02875 ankyrin repeat protei 99.8 1.7E-19 3.7E-24 168.0 10.9 128 161-295 71-199 (413)
17 PHA03095 ankyrin-like protein; 99.8 2.4E-19 5.3E-24 169.5 11.8 123 166-295 22-150 (471)
18 PHA02874 ankyrin repeat protei 99.8 3.7E-19 8.1E-24 166.8 12.5 118 171-295 104-221 (434)
19 PHA02798 ankyrin-like protein; 99.8 2.4E-19 5.2E-24 170.5 10.4 120 168-294 48-178 (489)
20 PHA02878 ankyrin repeat protei 99.8 2.7E-19 5.8E-24 169.7 10.6 126 161-295 171-298 (477)
21 KOG0195 Integrin-linked kinase 99.8 2.5E-19 5.3E-24 151.7 8.8 118 171-295 13-131 (448)
22 PHA02859 ankyrin repeat protei 99.8 2.2E-19 4.9E-24 152.0 8.7 124 162-295 25-156 (209)
23 PHA02946 ankyin-like protein; 99.8 5.2E-19 1.1E-23 165.8 11.3 118 170-295 51-171 (446)
24 smart00064 FYVE Protein presen 99.8 5.3E-20 1.1E-24 127.4 3.4 66 3-68 2-67 (68)
25 PHA02884 ankyrin repeat protei 99.8 1.5E-18 3.3E-23 153.1 13.1 118 165-285 40-158 (300)
26 PHA02736 Viral ankyrin protein 99.8 3.6E-19 7.8E-24 143.5 8.1 96 197-292 54-154 (154)
27 PHA02716 CPXV016; CPX019; EVM0 99.8 4.7E-19 1E-23 172.6 10.4 120 169-295 190-350 (764)
28 PHA02874 ankyrin repeat protei 99.8 7.5E-19 1.6E-23 164.7 10.7 129 160-295 37-188 (434)
29 PHA03100 ankyrin repeat protei 99.8 6.8E-19 1.5E-23 166.9 10.0 118 170-294 155-280 (480)
30 KOG0512 Fetal globin-inducing 99.8 9.5E-19 2.1E-23 137.8 9.0 93 201-293 66-159 (228)
31 PHA02741 hypothetical protein; 99.8 2.2E-18 4.8E-23 141.1 11.6 88 201-288 63-156 (169)
32 PHA02795 ankyrin-like protein; 99.8 8.2E-19 1.8E-23 160.9 9.8 129 164-293 155-291 (437)
33 PHA03100 ankyrin repeat protei 99.8 8.3E-19 1.8E-23 166.3 9.7 123 165-294 80-206 (480)
34 PHA02741 hypothetical protein; 99.8 1.1E-18 2.4E-23 142.8 8.4 104 185-295 15-130 (169)
35 PHA02743 Viral ankyrin protein 99.8 2.7E-18 5.9E-23 140.1 10.0 96 200-295 22-126 (166)
36 PHA02716 CPXV016; CPX019; EVM0 99.8 2.3E-18 5.1E-23 167.8 10.5 121 168-295 152-315 (764)
37 PHA02884 ankyrin repeat protei 99.8 2.3E-18 4.9E-23 152.0 8.9 96 200-295 35-135 (300)
38 PHA03095 ankyrin-like protein; 99.8 2.5E-18 5.4E-23 162.7 9.7 116 169-291 200-317 (471)
39 PHA02795 ankyrin-like protein; 99.7 5.2E-18 1.1E-22 155.6 10.3 119 168-295 128-252 (437)
40 KOG0512 Fetal globin-inducing 99.7 4.8E-18 1E-22 133.9 8.4 120 169-295 74-196 (228)
41 PHA02989 ankyrin repeat protei 99.7 7.4E-18 1.6E-22 160.5 10.9 119 170-295 87-216 (494)
42 PHA02876 ankyrin repeat protei 99.7 7.7E-18 1.7E-22 166.3 11.2 119 170-295 354-474 (682)
43 PHA02989 ankyrin repeat protei 99.7 8.5E-18 1.8E-22 160.1 10.6 120 169-295 122-287 (494)
44 KOG0508 Ankyrin repeat protein 99.7 3.8E-18 8.3E-23 152.8 7.4 135 160-294 44-180 (615)
45 PHA02730 ankyrin-like protein; 99.7 1E-17 2.2E-22 160.7 10.2 119 169-295 357-493 (672)
46 KOG4177 Ankyrin [Cell wall/mem 99.7 8.8E-18 1.9E-22 167.2 9.9 109 174-289 523-631 (1143)
47 KOG4214 Myotrophin and similar 99.7 1.5E-17 3.2E-22 117.8 7.6 91 201-292 5-95 (117)
48 KOG0510 Ankyrin repeat protein 99.7 6.1E-18 1.3E-22 160.1 7.3 128 161-295 276-408 (929)
49 PHA02798 ankyrin-like protein; 99.7 2.7E-17 5.8E-22 156.5 10.9 117 171-294 89-216 (489)
50 PHA02917 ankyrin-like protein; 99.7 3.1E-17 6.7E-22 160.0 11.0 115 173-294 14-168 (661)
51 KOG4177 Ankyrin [Cell wall/mem 99.7 1.2E-17 2.7E-22 166.1 8.1 129 159-294 475-603 (1143)
52 PHA02946 ankyin-like protein; 99.7 2.2E-17 4.8E-22 154.8 8.8 93 201-295 144-240 (446)
53 KOG0514 Ankyrin repeat protein 99.7 3.7E-17 7.9E-22 142.4 7.8 121 166-286 276-429 (452)
54 PHA02917 ankyrin-like protein; 99.7 4.6E-17 9.9E-22 158.8 9.4 119 166-292 111-258 (661)
55 KOG0514 Ankyrin repeat protein 99.7 2.5E-17 5.4E-22 143.4 6.4 104 184-294 261-404 (452)
56 PHA02876 ankyrin repeat protei 99.7 1.5E-16 3.3E-21 157.2 11.7 114 173-293 289-404 (682)
57 KOG0502 Integral membrane anky 99.7 8.8E-18 1.9E-22 137.2 1.7 124 164-295 166-289 (296)
58 PHA02736 Viral ankyrin protein 99.7 9.8E-17 2.1E-21 129.3 6.6 96 198-295 17-124 (154)
59 KOG1729 FYVE finger containing 99.7 1.2E-17 2.6E-22 144.8 0.5 67 2-69 159-226 (288)
60 PLN03192 Voltage-dependent pot 99.6 8.5E-16 1.8E-20 154.5 12.4 97 199-295 526-653 (823)
61 KOG1818 Membrane trafficking a 99.6 4.7E-17 1E-21 152.4 2.8 70 4-73 158-227 (634)
62 PHA02792 ankyrin-like protein; 99.6 7.8E-16 1.7E-20 146.4 9.8 117 170-295 320-441 (631)
63 KOG0510 Ankyrin repeat protein 99.6 3.3E-16 7.2E-21 148.5 7.2 135 157-291 224-368 (929)
64 PTZ00322 6-phosphofructo-2-kin 99.6 1.6E-15 3.5E-20 148.7 12.0 94 201-294 85-185 (664)
65 KOG0515 p53-interacting protei 99.6 3.8E-15 8.1E-20 135.2 12.3 93 201-293 553-645 (752)
66 PF13857 Ank_5: Ankyrin repeat 99.6 4E-16 8.8E-21 103.5 4.5 55 217-271 1-56 (56)
67 PHA02792 ankyrin-like protein; 99.6 1.1E-15 2.3E-20 145.5 8.4 122 165-291 346-480 (631)
68 PF12796 Ank_2: Ankyrin repeat 99.6 1.2E-15 2.5E-20 111.2 6.6 83 168-261 7-89 (89)
69 KOG0505 Myosin phosphatase, re 99.6 6.4E-16 1.4E-20 140.8 5.9 122 167-295 82-262 (527)
70 PHA02730 ankyrin-like protein; 99.6 5.3E-15 1.1E-19 142.1 11.4 96 198-293 41-146 (672)
71 cd00065 FYVE FYVE domain; Zinc 99.6 3.5E-16 7.5E-21 104.3 2.1 55 11-65 2-56 (57)
72 KOG1819 FYVE finger-containing 99.6 2.3E-16 5E-21 142.2 1.6 63 4-66 894-961 (990)
73 cd00204 ANK ankyrin repeats; 99.6 2.6E-14 5.7E-19 109.3 12.9 99 197-295 6-104 (126)
74 KOG0195 Integrin-linked kinase 99.6 1.1E-15 2.5E-20 129.6 5.4 119 166-291 42-160 (448)
75 KOG0505 Myosin phosphatase, re 99.6 3.5E-15 7.5E-20 136.0 6.8 126 163-295 45-229 (527)
76 PF13637 Ank_4: Ankyrin repeat 99.6 7.6E-15 1.6E-19 96.7 6.2 54 231-284 1-54 (54)
77 PTZ00303 phosphatidylinositol 99.5 2.7E-15 5.9E-20 141.1 3.2 67 2-68 450-530 (1374)
78 PF13637 Ank_4: Ankyrin repeat 99.5 1.9E-14 4.1E-19 94.8 6.2 54 198-251 1-54 (54)
79 COG0666 Arp FOG: Ankyrin repea 99.5 3.3E-14 7.3E-19 119.9 9.2 112 169-287 84-203 (235)
80 COG0666 Arp FOG: Ankyrin repea 99.5 8.7E-14 1.9E-18 117.4 11.2 96 199-294 74-177 (235)
81 KOG4214 Myotrophin and similar 99.5 1.6E-14 3.4E-19 102.5 5.2 92 172-271 16-107 (117)
82 KOG0507 CASK-interacting adapt 99.5 1.2E-14 2.5E-19 137.1 5.7 120 160-286 51-170 (854)
83 TIGR00870 trp transient-recept 99.5 3.2E-14 6.8E-19 142.0 8.5 129 160-295 19-206 (743)
84 KOG0507 CASK-interacting adapt 99.5 5.2E-14 1.1E-18 132.8 7.8 99 197-295 48-146 (854)
85 cd00204 ANK ankyrin repeats; 99.5 1.9E-13 4.1E-18 104.5 9.5 110 168-284 17-126 (126)
86 KOG1710 MYND Zn-finger and ank 99.5 1.2E-13 2.6E-18 117.3 8.8 111 169-286 23-134 (396)
87 KOG3676 Ca2+-permeable cation 99.5 8.7E-14 1.9E-18 132.6 8.8 102 194-295 180-306 (782)
88 KOG1710 MYND Zn-finger and ank 99.5 8.5E-14 1.8E-18 118.1 6.4 97 200-296 14-111 (396)
89 TIGR00870 trp transient-recept 99.5 1.4E-13 3.1E-18 137.3 8.2 95 196-290 126-243 (743)
90 KOG0515 p53-interacting protei 99.4 1E-12 2.2E-17 119.6 9.8 94 192-285 577-673 (752)
91 PF13857 Ank_5: Ankyrin repeat 99.4 1E-12 2.2E-17 87.1 4.8 55 177-238 1-56 (56)
92 PTZ00322 6-phosphofructo-2-kin 99.3 1.7E-12 3.6E-17 127.5 7.0 104 162-272 86-196 (664)
93 KOG1842 FYVE finger-containing 99.3 8.5E-14 1.8E-18 124.0 -2.0 67 3-70 172-261 (505)
94 KOG3676 Ca2+-permeable cation 99.3 2E-12 4.2E-17 123.5 6.4 118 169-286 195-330 (782)
95 KOG4369 RTK signaling protein 99.2 1E-11 2.2E-16 121.4 4.1 128 160-294 759-887 (2131)
96 KOG0506 Glutaminase (contains 99.1 6.1E-11 1.3E-15 106.9 6.0 90 199-288 507-597 (622)
97 KOG0818 GTPase-activating prot 99.1 2.2E-10 4.9E-15 103.7 9.1 86 201-286 136-222 (669)
98 KOG4369 RTK signaling protein 99.1 2.7E-11 5.8E-16 118.5 3.0 124 165-293 864-988 (2131)
99 KOG0782 Predicted diacylglycer 99.1 1.4E-10 3.1E-15 106.5 5.8 104 176-286 884-989 (1004)
100 KOG1841 Smad anchor for recept 99.0 1E-10 2.2E-15 114.7 3.5 61 2-63 548-608 (1287)
101 KOG1409 Uncharacterized conser 99.0 8.7E-11 1.9E-15 102.2 1.3 91 3-97 274-375 (404)
102 KOG0783 Uncharacterized conser 99.0 1.9E-10 4.1E-15 109.9 3.2 83 184-273 45-128 (1267)
103 PF13606 Ank_3: Ankyrin repeat 99.0 6.7E-10 1.5E-14 63.4 4.0 28 231-258 2-29 (30)
104 PF13606 Ank_3: Ankyrin repeat 99.0 6.4E-10 1.4E-14 63.5 3.5 30 263-292 1-30 (30)
105 KOG0705 GTPase-activating prot 98.9 2.3E-09 5.1E-14 98.9 8.3 89 201-289 627-719 (749)
106 PF00023 Ank: Ankyrin repeat H 98.9 1.3E-09 2.9E-14 63.8 4.3 31 231-261 2-32 (33)
107 KOG0522 Ankyrin repeat protein 98.9 2E-09 4.3E-14 98.7 7.5 86 201-286 23-110 (560)
108 PF00023 Ank: Ankyrin repeat H 98.9 1.2E-09 2.5E-14 64.1 3.8 33 263-295 1-33 (33)
109 KOG0783 Uncharacterized conser 98.9 7.5E-10 1.6E-14 105.9 1.7 72 224-295 45-117 (1267)
110 KOG0511 Ankyrin repeat protein 98.8 3.2E-08 7E-13 87.4 8.7 82 201-285 39-120 (516)
111 KOG2384 Major histocompatibili 98.6 9E-08 2E-12 77.2 6.5 53 201-253 15-68 (223)
112 KOG0705 GTPase-activating prot 98.6 7.4E-08 1.6E-12 89.2 6.1 82 174-258 640-721 (749)
113 KOG0521 Putative GTPase activa 98.6 3.9E-08 8.4E-13 97.1 4.5 89 197-285 655-743 (785)
114 KOG0782 Predicted diacylglycer 98.6 2.3E-07 5E-12 85.8 8.6 95 201-295 869-965 (1004)
115 KOG1843 Uncharacterized conser 98.5 2.8E-08 6.1E-13 88.4 0.8 66 2-67 151-218 (473)
116 KOG0818 GTPase-activating prot 98.5 2.2E-07 4.8E-12 84.7 6.2 82 165-252 140-221 (669)
117 KOG0506 Glutaminase (contains 98.3 1.9E-07 4.1E-12 84.7 1.4 86 162-254 510-596 (622)
118 KOG0520 Uncharacterized conser 98.3 6.2E-07 1.3E-11 88.6 4.0 96 197-293 573-670 (975)
119 KOG2384 Major histocompatibili 98.2 4.2E-06 9E-11 67.7 7.6 68 221-288 2-70 (223)
120 KOG3609 Receptor-activated Ca2 98.2 1.9E-06 4.1E-11 83.6 6.3 96 183-292 54-159 (822)
121 KOG0511 Ankyrin repeat protein 98.2 1.9E-06 4.1E-11 76.4 5.7 58 232-289 37-94 (516)
122 KOG0522 Ankyrin repeat protein 98.2 3E-06 6.6E-11 78.2 6.6 68 179-253 43-110 (560)
123 KOG4424 Predicted Rho/Rac guan 98.0 1.1E-06 2.4E-11 81.8 0.6 62 8-70 412-474 (623)
124 KOG0521 Putative GTPase activa 98.0 4.1E-06 8.8E-11 83.0 4.3 76 219-294 642-719 (785)
125 KOG1811 Predicted Zn2+-binding 98.0 8.2E-07 1.8E-11 83.1 -1.5 67 3-69 314-385 (1141)
126 KOG0520 Uncharacterized conser 97.8 8.4E-06 1.8E-10 80.8 2.4 85 201-286 611-702 (975)
127 KOG0230 Phosphatidylinositol-4 97.7 5.8E-05 1.3E-09 77.4 5.5 52 9-71 3-54 (1598)
128 KOG2505 Ankyrin repeat protein 97.6 0.00016 3.4E-09 66.6 6.4 71 211-284 404-480 (591)
129 smart00248 ANK ankyrin repeats 97.4 0.00035 7.6E-09 37.8 4.1 26 231-256 2-27 (30)
130 PF02318 FYVE_2: FYVE-type zin 97.3 9.7E-05 2.1E-09 56.5 1.8 51 10-67 53-104 (118)
131 smart00248 ANK ankyrin repeats 97.3 0.00037 8.1E-09 37.7 3.6 29 263-291 1-29 (30)
132 KOG0230 Phosphatidylinositol-4 97.3 0.00015 3.2E-09 74.6 2.8 34 6-41 92-125 (1598)
133 KOG3609 Receptor-activated Ca2 97.0 0.00081 1.7E-08 65.9 4.9 81 201-288 28-112 (822)
134 PF06128 Shigella_OspC: Shigel 96.5 0.011 2.5E-07 49.5 7.1 90 200-290 181-280 (284)
135 KOG2505 Ankyrin repeat protein 96.4 0.003 6.5E-08 58.4 3.7 67 172-239 405-471 (591)
136 TIGR00622 ssl1 transcription f 94.4 0.03 6.4E-07 41.9 2.3 41 4-44 48-98 (112)
137 KOG1729 FYVE finger containing 94.2 0.0064 1.4E-07 53.5 -1.9 64 3-66 12-81 (288)
138 KOG0993 Rab5 GTPase effector R 94.2 0.0013 2.9E-08 59.1 -6.2 67 3-71 460-528 (542)
139 PF07975 C1_4: TFIIH C1-like d 93.7 0.011 2.4E-07 37.7 -1.1 30 13-42 1-36 (51)
140 KOG1841 Smad anchor for recept 93.5 0.17 3.8E-06 51.5 6.3 55 2-69 648-702 (1287)
141 KOG3576 Ovo and related transc 92.2 0.027 5.8E-07 46.4 -1.1 32 7-38 113-156 (267)
142 PF11929 DUF3447: Domain of un 91.8 0.38 8.3E-06 33.4 4.6 47 200-253 8-54 (76)
143 PF11929 DUF3447: Domain of un 91.7 0.25 5.5E-06 34.4 3.6 48 232-286 7-54 (76)
144 PRK00464 nrdR transcriptional 91.3 0.085 1.8E-06 42.1 0.9 26 12-37 1-38 (154)
145 PF06128 Shigella_OspC: Shigel 90.9 0.5 1.1E-05 39.9 5.0 55 202-256 219-279 (284)
146 KOG4275 Predicted E3 ubiquitin 90.4 0.042 9.1E-07 47.6 -1.7 53 6-67 39-91 (350)
147 PF09538 FYDLN_acid: Protein o 89.3 0.21 4.5E-06 37.4 1.5 31 7-37 5-36 (108)
148 smart00154 ZnF_AN1 AN1-like Zi 88.7 0.24 5.2E-06 29.7 1.2 26 14-41 1-26 (39)
149 PF13717 zinc_ribbon_4: zinc-r 88.5 0.23 5E-06 29.2 1.0 25 13-37 4-35 (36)
150 PF07191 zinc-ribbons_6: zinc- 88.0 0.31 6.6E-06 33.2 1.5 57 13-71 3-64 (70)
151 TIGR02300 FYDLN_acid conserved 87.9 0.29 6.2E-06 37.3 1.4 31 7-37 5-36 (129)
152 PHA02768 hypothetical protein; 86.8 0.25 5.4E-06 32.0 0.5 26 12-37 6-41 (55)
153 PF13719 zinc_ribbon_5: zinc-r 86.4 0.37 8E-06 28.5 1.0 25 13-37 4-35 (37)
154 PF03158 DUF249: Multigene fam 86.3 1.5 3.3E-05 35.8 4.8 79 201-285 107-191 (192)
155 PF14634 zf-RING_5: zinc-RING 84.3 0.17 3.8E-06 31.1 -1.1 33 13-46 1-33 (44)
156 COG5151 SSL1 RNA polymerase II 81.0 0.75 1.6E-05 40.4 1.1 41 3-43 354-404 (421)
157 PRK00398 rpoP DNA-directed RNA 79.8 1.1 2.4E-05 27.8 1.3 26 12-37 4-31 (46)
158 KOG3173 Predicted Zn-finger pr 79.7 0.9 2E-05 36.8 1.1 28 11-41 105-132 (167)
159 KOG0320 Predicted E3 ubiquitin 79.5 0.24 5.1E-06 40.0 -2.2 50 11-71 131-181 (187)
160 PF12773 DZR: Double zinc ribb 79.1 1.3 2.7E-05 27.9 1.5 29 8-36 9-38 (50)
161 KOG3799 Rab3 effector RIM1 and 78.4 0.86 1.9E-05 35.0 0.6 53 9-66 63-116 (169)
162 PF13639 zf-RING_2: Ring finge 77.9 0.53 1.1E-05 28.8 -0.6 34 12-46 1-34 (44)
163 PF03107 C1_2: C1 domain; Int 77.9 1.7 3.7E-05 24.3 1.6 29 13-42 2-30 (30)
164 KOG2164 Predicted E3 ubiquitin 77.7 0.58 1.3E-05 44.0 -0.6 52 11-69 186-237 (513)
165 PF07282 OrfB_Zn_ribbon: Putat 77.2 1.8 3.9E-05 29.3 1.9 31 7-37 24-56 (69)
166 PRK03564 formate dehydrogenase 77.1 2.2 4.8E-05 38.1 2.9 61 10-70 186-265 (309)
167 PF10571 UPF0547: Uncharacteri 76.9 1.1 2.4E-05 24.2 0.6 23 13-37 2-24 (26)
168 PF01485 IBR: IBR domain; Int 76.5 2.1 4.5E-05 28.1 2.0 35 10-44 17-57 (64)
169 PF03158 DUF249: Multigene fam 75.7 4.8 0.0001 33.0 4.2 87 200-291 78-170 (192)
170 cd00162 RING RING-finger (Real 73.1 0.36 7.8E-06 29.0 -2.3 30 13-45 1-30 (45)
171 TIGR02098 MJ0042_CXXC MJ0042 f 72.5 2.3 4.9E-05 25.1 1.3 11 13-23 4-14 (38)
172 PRK00432 30S ribosomal protein 70.8 2.8 6.1E-05 26.6 1.5 27 11-37 20-47 (50)
173 PF15135 UPF0515: Uncharacteri 69.9 2.7 5.7E-05 35.9 1.5 36 4-39 125-167 (278)
174 PRK00420 hypothetical protein; 68.7 3.1 6.6E-05 31.3 1.5 25 11-35 23-48 (112)
175 PF01927 Mut7-C: Mut7-C RNAse 68.7 3.6 7.7E-05 32.6 2.0 19 5-23 85-103 (147)
176 TIGR02605 CxxC_CxxC_SSSS putat 67.8 2.2 4.7E-05 27.1 0.5 13 13-25 7-19 (52)
177 PF13912 zf-C2H2_6: C2H2-type 67.1 1.6 3.5E-05 23.4 -0.2 12 13-24 3-14 (27)
178 COG1773 Rubredoxin [Energy pro 66.1 2.9 6.3E-05 27.0 0.8 15 26-40 2-16 (55)
179 TIGR00100 hypA hydrogenase nic 65.9 2.9 6.3E-05 31.6 0.9 23 12-34 71-93 (115)
180 PF04438 zf-HIT: HIT zinc fing 65.7 3.3 7.1E-05 23.2 0.9 23 12-39 3-25 (30)
181 PF13923 zf-C3HC4_2: Zinc fing 65.2 1.7 3.7E-05 25.8 -0.4 29 14-45 1-29 (39)
182 smart00647 IBR In Between Ring 65.2 6.2 0.00013 25.8 2.4 35 10-44 17-57 (64)
183 COG1996 RPC10 DNA-directed RNA 65.0 2.9 6.4E-05 26.3 0.7 24 12-35 7-32 (49)
184 PLN03208 E3 ubiquitin-protein 64.4 1.3 2.8E-05 36.6 -1.4 56 10-69 17-80 (193)
185 TIGR01562 FdhE formate dehydro 64.3 5.3 0.00011 35.7 2.4 62 9-71 182-266 (305)
186 KOG0317 Predicted E3 ubiquitin 63.9 1.9 4.2E-05 37.6 -0.4 46 12-69 240-285 (293)
187 PF01155 HypA: Hydrogenase exp 63.4 2.2 4.8E-05 32.1 -0.1 24 12-35 71-94 (113)
188 PF13445 zf-RING_UBOX: RING-ty 63.0 2 4.3E-05 26.3 -0.4 30 14-44 1-30 (43)
189 COG2126 RPL37A Ribosomal prote 62.4 3.9 8.5E-05 26.6 0.9 7 30-36 19-25 (61)
190 KOG3576 Ovo and related transc 62.0 1.8 3.9E-05 35.9 -0.9 57 9-65 143-220 (267)
191 PF06750 DiS_P_DiS: Bacterial 61.8 4.4 9.5E-05 29.4 1.2 12 11-22 33-44 (92)
192 PF14803 Nudix_N_2: Nudix N-te 61.8 5.5 0.00012 23.1 1.3 28 37-65 2-30 (34)
193 PF03604 DNA_RNApol_7kD: DNA d 61.4 5.4 0.00012 22.7 1.3 23 13-35 2-25 (32)
194 KOG0823 Predicted E3 ubiquitin 61.3 1.9 4.2E-05 36.4 -0.9 35 31-70 63-97 (230)
195 PF08271 TF_Zn_Ribbon: TFIIB z 61.3 4.7 0.0001 24.5 1.1 9 13-21 2-10 (43)
196 PF01286 XPA_N: XPA protein N- 61.0 4.6 0.0001 23.4 0.9 12 11-22 3-14 (34)
197 PRK14559 putative protein seri 60.8 4.2 9E-05 40.3 1.2 32 9-44 13-50 (645)
198 PRK12495 hypothetical protein; 60.7 1E+02 0.0023 26.1 9.4 32 27-72 42-73 (226)
199 smart00659 RPOLCX RNA polymera 60.4 4.8 0.0001 24.8 1.0 22 13-34 4-26 (44)
200 PF06221 zf-C2HC5: Putative zi 60.2 3.1 6.7E-05 27.2 0.1 17 23-39 14-30 (57)
201 KOG0978 E3 ubiquitin ligase in 59.8 0.91 2E-05 44.7 -3.5 45 12-67 644-688 (698)
202 PF09947 DUF2180: Uncharacteri 58.3 2.9 6.2E-05 28.4 -0.3 56 13-68 2-67 (68)
203 KOG1314 DHHC-type Zn-finger pr 58.0 5 0.00011 36.2 1.1 33 2-36 77-114 (414)
204 smart00834 CxxC_CXXC_SSSS Puta 57.7 4.3 9.4E-05 24.1 0.5 13 13-25 7-19 (41)
205 PRK12380 hydrogenase nickel in 57.6 5 0.00011 30.2 0.9 23 12-34 71-93 (113)
206 KOG2462 C2H2-type Zn-finger pr 57.5 4 8.8E-05 35.5 0.4 12 57-68 243-254 (279)
207 cd02341 ZZ_ZZZ3 Zinc finger, Z 56.3 3.9 8.4E-05 25.7 0.1 29 13-43 2-34 (48)
208 PRK00564 hypA hydrogenase nick 56.1 5.5 0.00012 30.3 0.9 23 12-34 72-95 (117)
209 PF10367 Vps39_2: Vacuolar sor 56.0 8.7 0.00019 28.1 2.0 32 10-43 77-108 (109)
210 KOG2462 C2H2-type Zn-finger pr 55.5 3.1 6.7E-05 36.2 -0.6 26 12-37 188-225 (279)
211 PRK04136 rpl40e 50S ribosomal 54.2 7.4 0.00016 24.3 1.1 23 11-35 14-36 (48)
212 PF09723 Zn-ribbon_8: Zinc rib 54.0 5.4 0.00012 24.2 0.5 9 14-22 8-16 (42)
213 PF12760 Zn_Tnp_IS1595: Transp 52.9 8.7 0.00019 23.7 1.3 28 8-35 15-45 (46)
214 PRK03824 hypA hydrogenase nick 52.4 6.7 0.00014 30.6 0.9 13 25-37 68-80 (135)
215 KOG1595 CCCH-type Zn-finger pr 52.4 3.1 6.6E-05 39.5 -1.2 89 197-287 57-155 (528)
216 KOG4739 Uncharacterized protei 52.4 5.4 0.00012 34.0 0.4 44 13-68 5-48 (233)
217 PF01529 zf-DHHC: DHHC palmito 50.0 8.4 0.00018 31.0 1.2 26 10-37 47-72 (174)
218 PF01428 zf-AN1: AN1-like Zinc 49.3 9.8 0.00021 23.1 1.1 15 27-41 13-27 (43)
219 PF00301 Rubredoxin: Rubredoxi 49.2 8.5 0.00018 24.1 0.8 13 27-39 1-13 (47)
220 PF11781 RRN7: RNA polymerase 48.7 11 0.00023 22.1 1.2 24 13-36 10-34 (36)
221 PF02150 RNA_POL_M_15KD: RNA p 48.2 9.6 0.00021 22.1 0.9 7 37-43 3-9 (35)
222 KOG1311 DHHC-type Zn-finger pr 48.1 8.1 0.00018 34.4 0.8 26 10-37 112-137 (299)
223 PRK03681 hypA hydrogenase nick 48.0 8.8 0.00019 29.0 0.9 11 13-23 72-82 (114)
224 PF00097 zf-C3HC4: Zinc finger 48.0 4.7 0.0001 23.9 -0.5 30 14-46 1-30 (41)
225 cd02340 ZZ_NBR1_like Zinc fing 47.5 7.5 0.00016 23.7 0.4 30 13-44 2-32 (43)
226 KOG1814 Predicted E3 ubiquitin 47.4 9.1 0.0002 35.3 1.0 36 9-44 366-403 (445)
227 PF07503 zf-HYPF: HypF finger; 47.4 6.4 0.00014 22.9 0.0 28 14-44 2-30 (35)
228 COG1997 RPL43A Ribosomal prote 47.4 11 0.00023 26.9 1.2 28 11-39 35-65 (89)
229 cd02249 ZZ Zinc finger, ZZ typ 46.7 6.6 0.00014 24.2 0.0 29 13-43 2-31 (46)
230 COG0675 Transposase and inacti 46.4 12 0.00026 33.5 1.7 27 8-37 306-332 (364)
231 KOG1356 Putative transcription 45.6 9.2 0.0002 38.4 0.8 34 11-46 229-262 (889)
232 PF07649 C1_3: C1-like domain; 45.4 3.7 8E-05 22.8 -1.1 28 13-41 2-29 (30)
233 PLN02400 cellulose synthase 45.3 17 0.00037 37.9 2.7 55 10-71 35-92 (1085)
234 PF13901 DUF4206: Domain of un 45.2 12 0.00026 31.3 1.4 45 29-73 2-51 (202)
235 PLN02638 cellulose synthase A 45.2 15 0.00032 38.4 2.2 57 8-71 14-73 (1079)
236 smart00531 TFIIE Transcription 45.1 9.5 0.00021 30.1 0.7 13 11-23 99-111 (147)
237 PF05443 ROS_MUCR: ROS/MUCR tr 44.7 7.4 0.00016 30.2 0.0 18 10-28 71-88 (132)
238 KOG3795 Uncharacterized conser 44.4 9.6 0.00021 30.8 0.6 24 20-43 8-34 (230)
239 PF09297 zf-NADH-PPase: NADH p 44.4 14 0.00031 20.8 1.2 25 37-65 5-29 (32)
240 KOG3896 Dynactin, subunit p62 44.1 9.4 0.0002 34.2 0.6 29 17-46 15-43 (449)
241 smart00291 ZnF_ZZ Zinc-binding 43.9 10 0.00023 23.1 0.6 29 11-41 4-33 (44)
242 TIGR00244 transcriptional regu 43.8 11 0.00024 29.7 0.9 13 25-37 26-38 (147)
243 PF15616 TerY-C: TerY-C metal 43.2 13 0.00029 28.7 1.2 25 11-40 77-101 (131)
244 COG4855 Uncharacterized protei 43.0 4.2 9.1E-05 27.2 -1.3 62 7-68 3-74 (76)
245 PF10497 zf-4CXXC_R1: Zinc-fin 42.9 5.5 0.00012 29.6 -0.9 56 9-66 5-70 (105)
246 PHA00732 hypothetical protein 42.9 17 0.00036 25.5 1.6 11 13-23 3-13 (79)
247 KOG1709 Guanidinoacetate methy 42.7 22 0.00047 30.2 2.5 39 178-223 2-40 (271)
248 KOG2593 Transcription initiati 42.5 9.9 0.00021 35.3 0.5 34 11-44 128-170 (436)
249 KOG0153 Predicted RNA-binding 42.4 3.8 8.3E-05 36.7 -2.1 17 10-26 40-56 (377)
250 PRK04023 DNA polymerase II lar 42.3 17 0.00037 37.6 2.1 47 10-70 625-676 (1121)
251 cd00202 ZnF_GATA Zinc finger D 42.0 20 0.00044 23.1 1.7 35 38-72 2-36 (54)
252 PF13465 zf-H2C2_2: Zinc-finge 41.9 14 0.00031 19.6 0.9 13 25-37 12-24 (26)
253 KOG3836 HLH transcription fact 41.9 6.5 0.00014 38.0 -0.8 54 205-258 403-456 (605)
254 TIGR00570 cdk7 CDK-activating 41.9 6.5 0.00014 35.0 -0.7 50 12-70 4-56 (309)
255 TIGR01384 TFS_arch transcripti 41.7 14 0.0003 27.2 1.1 10 13-22 2-11 (104)
256 PF14446 Prok-RING_1: Prokaryo 41.5 17 0.00037 23.5 1.3 28 10-37 4-31 (54)
257 COG5574 PEX10 RING-finger-cont 41.3 6 0.00013 34.2 -1.0 47 12-68 216-262 (271)
258 PF10170 C6_DPF: Cysteine-rich 41.1 11 0.00025 27.4 0.5 30 27-66 49-80 (97)
259 PF14445 Prok-RING_2: Prokaryo 40.7 3.1 6.6E-05 26.2 -2.1 46 11-68 7-52 (57)
260 COG3058 FdhE Uncharacterized p 40.7 9.7 0.00021 33.2 0.2 67 4-70 178-265 (308)
261 PTZ00218 40S ribosomal protein 40.7 14 0.0003 23.8 0.8 13 57-69 34-46 (54)
262 PF13248 zf-ribbon_3: zinc-rib 40.2 15 0.00033 19.6 0.8 6 14-19 5-10 (26)
263 PF07754 DUF1610: Domain of un 40.2 17 0.00037 19.2 1.0 9 27-35 16-24 (24)
264 PF00130 C1_1: Phorbol esters/ 40.1 24 0.00053 22.1 2.0 36 9-44 9-45 (53)
265 COG1327 Predicted transcriptio 40.1 12 0.00026 29.6 0.6 16 55-70 26-41 (156)
266 KOG1829 Uncharacterized conser 40.0 9.3 0.0002 37.1 -0.1 56 13-68 342-404 (580)
267 TIGR00595 priA primosomal prot 40.0 20 0.00043 34.6 2.1 18 201-218 384-402 (505)
268 TIGR00280 L37a ribosomal prote 39.9 15 0.00032 26.5 1.0 31 11-41 35-67 (91)
269 COG3357 Predicted transcriptio 39.7 13 0.00029 26.6 0.7 15 23-37 54-68 (97)
270 COG3791 Uncharacterized conser 39.7 12 0.00027 29.0 0.6 12 11-22 26-37 (133)
271 PRK11595 DNA utilization prote 39.5 7.7 0.00017 33.0 -0.6 23 12-36 21-43 (227)
272 PF14353 CpXC: CpXC protein 39.4 13 0.00029 28.4 0.8 25 13-37 3-48 (128)
273 PF13913 zf-C2HC_2: zinc-finge 39.3 5.3 0.00011 21.2 -1.1 12 12-23 3-14 (25)
274 PRK09678 DNA-binding transcrip 39.2 18 0.00039 24.9 1.3 26 12-37 2-39 (72)
275 PF13920 zf-C3HC4_3: Zinc fing 39.2 2.9 6.2E-05 26.3 -2.6 45 12-68 3-48 (50)
276 PF00096 zf-C2H2: Zinc finger, 39.1 11 0.00025 18.9 0.2 11 13-23 2-12 (23)
277 PRK03976 rpl37ae 50S ribosomal 39.0 15 0.00034 26.4 0.9 31 11-41 36-68 (90)
278 PF04981 NMD3: NMD3 family ; 38.1 14 0.0003 31.8 0.7 34 36-69 14-47 (236)
279 PRK14873 primosome assembly pr 37.9 17 0.00037 36.3 1.4 33 13-45 394-432 (665)
280 smart00661 RPOL9 RNA polymeras 37.6 26 0.00056 21.9 1.8 10 56-65 19-28 (52)
281 PF02591 DUF164: Putative zinc 37.6 13 0.00029 23.9 0.4 26 11-36 22-55 (56)
282 COG1198 PriA Primosomal protei 37.5 21 0.00046 35.9 2.0 32 13-44 446-484 (730)
283 KOG1315 Predicted DHHC-type Zn 37.5 16 0.00034 32.8 1.0 24 10-35 108-131 (307)
284 cd00350 rubredoxin_like Rubred 37.2 18 0.0004 20.5 0.9 11 27-37 1-11 (33)
285 cd02336 ZZ_RSC8 Zinc finger, Z 36.6 13 0.00028 23.0 0.2 11 56-66 22-32 (45)
286 smart00109 C1 Protein kinase C 36.6 17 0.00037 22.1 0.8 33 10-42 10-42 (49)
287 PF09862 DUF2089: Protein of u 36.4 18 0.00038 27.3 0.9 24 14-39 1-24 (113)
288 TIGR00373 conserved hypothetic 36.1 17 0.00036 29.2 0.8 26 12-37 110-138 (158)
289 PF14569 zf-UDP: Zinc-binding 36.0 4.4 9.6E-05 28.1 -2.1 58 6-70 4-64 (80)
290 PHA02942 putative transposase; 35.5 25 0.00055 32.6 2.0 29 9-37 323-352 (383)
291 KOG4323 Polycomb-like PHD Zn-f 35.2 13 0.00027 35.1 0.0 60 12-71 169-229 (464)
292 KOG3836 HLH transcription fact 35.0 12 0.00027 36.2 -0.1 53 238-290 403-455 (605)
293 PTZ00255 60S ribosomal protein 34.9 21 0.00046 25.7 1.1 31 11-41 36-68 (90)
294 PF04216 FdhE: Protein involve 34.7 11 0.00025 33.3 -0.4 61 11-71 172-252 (290)
295 KOG1924 RhoA GTPase effector D 34.6 1.9E+02 0.004 29.6 7.6 9 233-241 700-708 (1102)
296 KOG1818 Membrane trafficking a 34.6 3.9 8.5E-05 39.9 -3.5 51 12-63 55-106 (634)
297 COG1545 Predicted nucleic-acid 34.5 20 0.00043 28.1 1.0 10 28-37 30-39 (140)
298 PF01780 Ribosomal_L37ae: Ribo 34.5 19 0.00042 25.9 0.8 26 13-38 37-64 (90)
299 PF00643 zf-B_box: B-box zinc 34.3 10 0.00022 22.6 -0.5 29 11-43 3-31 (42)
300 PF02148 zf-UBP: Zn-finger in 33.9 25 0.00053 23.2 1.3 24 14-40 1-24 (63)
301 PRK05978 hypothetical protein; 33.9 20 0.00043 28.4 0.9 25 13-37 35-62 (148)
302 PLN03148 Blue copper-like prot 33.8 58 0.0013 26.4 3.6 20 114-133 104-123 (167)
303 COG1779 C4-type Zn-finger prot 33.7 31 0.00067 28.7 2.0 10 227-236 160-169 (201)
304 PRK12496 hypothetical protein; 33.7 19 0.00041 29.1 0.8 13 25-37 125-137 (164)
305 PF13453 zf-TFIIB: Transcripti 33.4 22 0.00047 21.3 0.8 11 55-65 17-27 (41)
306 PF10013 DUF2256: Uncharacteri 33.2 18 0.0004 21.9 0.5 16 10-25 7-22 (42)
307 cd00729 rubredoxin_SM Rubredox 32.8 23 0.0005 20.3 0.9 12 27-38 2-13 (34)
308 PRK06266 transcription initiat 32.6 17 0.00036 29.8 0.3 26 12-37 118-146 (178)
309 PF09332 Mcm10: Mcm10 replicat 32.6 18 0.00039 32.9 0.5 11 26-36 284-294 (344)
310 KOG2932 E3 ubiquitin ligase in 32.0 17 0.00036 32.3 0.2 31 11-44 90-120 (389)
311 cd00730 rubredoxin Rubredoxin; 31.9 24 0.00051 22.4 0.9 13 27-39 1-13 (50)
312 PRK14890 putative Zn-ribbon RN 31.9 32 0.00069 22.6 1.4 27 10-36 6-34 (59)
313 COG4530 Uncharacterized protei 31.8 22 0.00048 26.4 0.8 27 11-37 9-36 (129)
314 PHA01732 proline-rich protein 31.7 81 0.0018 22.4 3.5 9 124-132 2-10 (94)
315 PF15227 zf-C3HC4_4: zinc fing 31.7 10 0.00022 22.9 -0.8 15 32-46 15-29 (42)
316 cd02335 ZZ_ADA2 Zinc finger, Z 31.6 18 0.0004 22.6 0.3 30 13-43 2-32 (49)
317 CHL00112 rpl28 ribosomal prote 31.5 32 0.00068 23.0 1.4 59 11-69 2-61 (63)
318 PF12647 RNHCP: RNHCP domain; 31.4 28 0.0006 25.1 1.2 26 10-35 3-32 (92)
319 PRK00359 rpmB 50S ribosomal pr 31.4 21 0.00045 24.9 0.6 60 11-70 2-62 (76)
320 cd02345 ZZ_dah Zinc finger, ZZ 31.4 16 0.00035 22.9 0.0 20 13-34 2-22 (49)
321 PF12172 DUF35_N: Rubredoxin-l 30.6 20 0.00044 20.8 0.4 8 29-36 13-20 (37)
322 PRK08351 DNA-directed RNA poly 30.4 30 0.00066 22.9 1.2 16 29-44 5-24 (61)
323 PRK04179 rpl37e 50S ribosomal 30.3 24 0.00052 23.4 0.7 7 30-36 20-26 (62)
324 COG1645 Uncharacterized Zn-fin 29.8 27 0.0006 27.0 1.1 26 11-44 28-53 (131)
325 COG1998 RPS31 Ribosomal protei 29.7 30 0.00065 21.8 1.0 24 12-35 20-45 (51)
326 PF10892 DUF2688: Protein of u 29.6 17 0.00038 23.4 -0.0 11 27-37 10-20 (60)
327 PLN02189 cellulose synthase 29.4 35 0.00076 35.6 2.0 55 10-71 33-90 (1040)
328 smart00184 RING Ring finger. E 29.2 11 0.00024 21.1 -0.9 15 31-45 14-28 (39)
329 COG3364 Zn-ribbon containing p 29.2 20 0.00044 26.3 0.2 12 27-38 2-13 (112)
330 PF01907 Ribosomal_L37e: Ribos 28.9 33 0.00071 22.2 1.1 7 30-36 18-24 (55)
331 PF06397 Desulfoferrod_N: Desu 28.5 27 0.00058 20.5 0.6 11 27-37 6-16 (36)
332 COG5273 Uncharacterized protei 28.1 28 0.00061 31.2 1.0 25 10-36 108-132 (309)
333 PF05191 ADK_lid: Adenylate ki 27.7 29 0.00062 20.3 0.7 33 28-70 2-34 (36)
334 TIGR00599 rad18 DNA repair pro 27.6 21 0.00045 33.2 0.1 32 10-45 25-56 (397)
335 KOG3183 Predicted Zn-finger pr 27.4 25 0.00054 30.0 0.5 56 11-70 8-68 (250)
336 PRK05580 primosome assembly pr 27.4 37 0.00079 34.1 1.8 15 29-43 383-398 (679)
337 PF02945 Endonuclease_7: Recom 27.3 19 0.00041 25.4 -0.2 26 11-36 22-50 (81)
338 PF14835 zf-RING_6: zf-RING of 27.0 35 0.00076 22.9 1.1 29 12-44 8-37 (65)
339 PF00569 ZZ: Zinc finger, ZZ t 27.0 20 0.00042 22.1 -0.1 22 11-33 4-25 (46)
340 PF04181 RPAP2_Rtr1: Rtr1/RPAP 26.8 25 0.00054 24.4 0.4 12 115-126 19-30 (79)
341 PLN02436 cellulose synthase A 26.8 46 0.001 34.9 2.4 55 10-71 35-92 (1094)
342 PHA02926 zinc finger-like prot 26.8 12 0.00025 31.7 -1.5 56 11-68 170-230 (242)
343 cd02342 ZZ_UBA_plant Zinc fing 26.6 24 0.00051 21.6 0.2 29 13-42 2-31 (43)
344 cd02339 ZZ_Mind_bomb Zinc fing 26.5 26 0.00057 21.6 0.4 30 13-43 2-32 (45)
345 PF11023 DUF2614: Protein of u 26.4 26 0.00056 26.3 0.4 25 13-37 71-95 (114)
346 PF13894 zf-C2H2_4: C2H2-type 26.4 34 0.00073 16.8 0.8 9 29-37 2-10 (24)
347 PHA00733 hypothetical protein 26.3 29 0.00063 26.7 0.7 14 9-22 38-51 (128)
348 KOG4591 Uncharacterized conser 25.9 47 0.001 27.8 1.8 47 228-274 219-270 (280)
349 COG1439 Predicted nucleic acid 25.9 33 0.00072 28.0 1.0 15 23-37 135-149 (177)
350 KOG0513 Ca2+-independent phosp 25.6 3.3 7.1E-05 39.7 -5.6 70 200-278 138-207 (503)
351 PF13240 zinc_ribbon_2: zinc-r 25.2 32 0.00069 17.8 0.5 20 14-35 2-21 (23)
352 COG4338 Uncharacterized protei 24.8 15 0.00033 22.9 -0.9 19 8-26 9-27 (54)
353 PRK06393 rpoE DNA-directed RNA 24.8 34 0.00074 22.9 0.7 16 28-43 6-25 (64)
354 PF01667 Ribosomal_S27e: Ribos 24.5 47 0.001 21.5 1.3 26 13-38 9-37 (55)
355 cd04476 RPA1_DBD_C RPA1_DBD_C: 24.1 35 0.00076 27.3 0.8 26 12-37 35-61 (166)
356 PF13790 DUF4182: Domain of un 24.0 52 0.0011 19.5 1.3 30 34-63 2-31 (38)
357 PF00641 zf-RanBP: Zn-finger i 23.5 36 0.00079 18.6 0.6 20 14-35 7-26 (30)
358 smart00504 Ubox Modified RING 23.4 30 0.00066 22.3 0.3 30 13-46 3-32 (63)
359 PF03966 Trm112p: Trm112p-like 23.3 50 0.0011 22.2 1.3 14 24-37 50-63 (68)
360 KOG1813 Predicted E3 ubiquitin 23.2 59 0.0013 28.8 2.0 29 12-44 242-270 (313)
361 PRK14559 putative protein seri 23.0 60 0.0013 32.4 2.3 48 12-69 2-53 (645)
362 PRK12495 hypothetical protein; 22.9 43 0.00092 28.3 1.1 27 10-44 41-67 (226)
363 COG4098 comFA Superfamily II D 22.8 36 0.00078 31.1 0.6 11 24-34 36-46 (441)
364 PF13005 zf-IS66: zinc-finger 22.6 47 0.001 20.2 1.0 12 12-23 3-14 (47)
365 PF12874 zf-met: Zinc-finger o 22.5 33 0.00071 17.6 0.2 10 13-22 2-11 (25)
366 smart00401 ZnF_GATA zinc finge 22.2 72 0.0016 20.2 1.8 35 38-72 6-40 (52)
367 KOG0006 E3 ubiquitin-protein l 22.0 21 0.00046 31.8 -0.9 28 16-43 322-352 (446)
368 cd07153 Fur_like Ferric uptake 22.0 43 0.00094 24.8 0.9 15 28-42 74-88 (116)
369 KOG1595 CCCH-type Zn-finger pr 22.0 19 0.00042 34.3 -1.2 63 230-294 57-123 (528)
370 TIGR01031 rpmF_bact ribosomal 21.8 64 0.0014 20.8 1.5 8 56-63 38-45 (55)
371 COG0375 HybF Zn finger protein 21.6 39 0.00085 25.5 0.6 22 13-34 72-93 (115)
372 smart00778 Prim_Zn_Ribbon Zinc 21.4 53 0.0012 19.4 1.0 14 12-25 4-19 (37)
373 COG2051 RPS27A Ribosomal prote 21.3 57 0.0012 22.0 1.2 26 13-38 21-49 (67)
374 KOG1313 DHHC-type Zn-finger pr 21.3 40 0.00087 29.5 0.6 25 10-36 101-125 (309)
375 PRK06260 threonine synthase; V 21.3 54 0.0012 30.4 1.6 25 12-36 4-28 (397)
376 KOG1924 RhoA GTPase effector D 20.6 2.4E+02 0.0052 28.8 5.7 6 266-271 862-867 (1102)
377 cd02338 ZZ_PCMF_like Zinc fing 20.6 37 0.0008 21.3 0.2 19 13-33 2-21 (49)
378 PF09889 DUF2116: Uncharacteri 20.6 43 0.00093 22.0 0.5 29 27-71 3-32 (59)
379 smart00355 ZnF_C2H2 zinc finge 20.4 40 0.00088 16.7 0.3 10 13-22 2-11 (26)
380 cd00029 C1 Protein kinase C co 20.4 41 0.0009 20.4 0.4 34 10-43 10-44 (50)
381 PF09845 DUF2072: Zn-ribbon co 20.3 1.2E+02 0.0026 23.5 2.9 10 28-37 2-11 (131)
382 PRK11582 flagella biosynthesis 20.3 31 0.00067 27.5 -0.2 18 28-45 70-87 (169)
383 PRK12366 replication factor A; 20.2 46 0.00099 33.2 0.9 25 12-36 533-557 (637)
384 PRK07591 threonine synthase; V 20.2 58 0.0013 30.6 1.5 25 12-37 19-43 (421)
No 1
>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=8.2e-25 Score=173.04 Aligned_cols=123 Identities=26% Similarity=0.315 Sum_probs=91.2
Q ss_pred CCCCCCcCccccc-CCCCCCCCCCCCCccccccChHHHHHHHHcCCHHHHHHHHHc-CCCCcccCCCCCcHHHHHHHcCC
Q 022481 166 RGSTSNSNFSSIF-NPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSE-GVDANFCDKQGMSLLHLAALFNR 243 (296)
Q Consensus 166 ~~~~~~~~~~~ll-~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~-gadvn~~d~~g~TpLh~A~~~g~ 243 (296)
.+.+...++.+|+ +.+..+|..|+.||+ |||.|+..|+.++|+.|+.+ |+|+|..+..|.|+||||+-.|+
T Consensus 46 ~S~g~~eiv~fLlsq~nv~~ddkDdaGWt-------Plhia~s~g~~evVk~Ll~r~~advna~tn~G~T~LHyAagK~r 118 (226)
T KOG4412|consen 46 CSFGHVEIVYFLLSQPNVKPDDKDDAGWT-------PLHIAASNGNDEVVKELLNRSGADVNATTNGGQTCLHYAAGKGR 118 (226)
T ss_pred eecCchhHHHHHHhcCCCCCCCccccCCc-------hhhhhhhcCcHHHHHHHhcCCCCCcceecCCCcceehhhhcCCh
Confidence 3445666677776 556666666665555 77777777777777777776 77777777777777777777777
Q ss_pred HHHHHHHHHCCCCCCccCCCCCCHhhHhhhcCcHHHHHHHHHcCCCCCCCCC
Q 022481 244 TDIAFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKNNVGSTTS 295 (296)
Q Consensus 244 ~~iv~~LL~~ga~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gadi~~~n~ 295 (296)
.+|+++||++|+.++++|..|.||||.|+..|+++++++|+..||.+|.+|+
T Consensus 119 ~eIaqlLle~ga~i~~kD~~~qtplHRAAavGklkvie~Li~~~a~~n~qDk 170 (226)
T KOG4412|consen 119 LEIAQLLLEKGALIRIKDKQGQTPLHRAAAVGKLKVIEYLISQGAPLNTQDK 170 (226)
T ss_pred hhHHHHHHhcCCCCcccccccCchhHHHHhccchhhHHHHHhcCCCCCcccc
Confidence 7777777777777777777777777777777777777777777777777764
No 2
>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=4.2e-24 Score=169.07 Aligned_cols=128 Identities=20% Similarity=0.228 Sum_probs=118.9
Q ss_pred cccCCCCCCCCcCcccccCC-CCCCCCCCCCCccccccChHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHH
Q 022481 161 NTARSRGSTSNSNFSSIFNP-GQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAA 239 (296)
Q Consensus 161 ~~~~~~~~~~~~~~~~ll~~-g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~ 239 (296)
+...+++.++..+++.|+.. |+++|..+..|.+ +||||+..|.++++++|+++|+.++.+|..|.||||.|+
T Consensus 75 Plhia~s~g~~evVk~Ll~r~~advna~tn~G~T-------~LHyAagK~r~eIaqlLle~ga~i~~kD~~~qtplHRAA 147 (226)
T KOG4412|consen 75 PLHIAASNGNDEVVKELLNRSGADVNATTNGGQT-------CLHYAAGKGRLEIAQLLLEKGALIRIKDKQGQTPLHRAA 147 (226)
T ss_pred hhhhhhhcCcHHHHHHHhcCCCCCcceecCCCcc-------eehhhhcCChhhHHHHHHhcCCCCcccccccCchhHHHH
Confidence 34556667788889999988 9999998876666 999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHCCCCCCccCCCCCCHhhHhhhcCcHHHHHHHHHcCCCCCCCCC
Q 022481 240 LFNRTDIAFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKNNVGSTTS 295 (296)
Q Consensus 240 ~~g~~~iv~~LL~~ga~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gadi~~~n~ 295 (296)
.-|.++++++|+..|+.+|.+|..|+||||.|...|+.+...+|+++||+++..|+
T Consensus 148 avGklkvie~Li~~~a~~n~qDk~G~TpL~~al~e~~~d~a~lLV~~gAd~~~edk 203 (226)
T KOG4412|consen 148 AVGKLKVIEYLISQGAPLNTQDKYGFTPLHHALAEGHPDVAVLLVRAGADTDREDK 203 (226)
T ss_pred hccchhhHHHHHhcCCCCCcccccCccHHHHHHhccCchHHHHHHHhccceeeccc
Confidence 99999999999999999999999999999999889999999999999999998875
No 3
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=99.86 E-value=3e-21 Score=140.98 Aligned_cols=89 Identities=28% Similarity=0.419 Sum_probs=83.9
Q ss_pred HHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHhhHhhhcCcHHHHH
Q 022481 202 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQ 281 (296)
Q Consensus 202 Lh~A~~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~iv~~LL~~ga~~~~~d~~g~TpL~~A~~~g~~~iv~ 281 (296)
||+|++.|+++++++|++.+.+++. |.||||+|+..|+.+++++|+++|++++.+|.+|+||||+|+..|+.++++
T Consensus 1 L~~A~~~~~~~~~~~ll~~~~~~~~----~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~ 76 (89)
T PF12796_consen 1 LHIAAQNGNLEILKFLLEKGADINL----GNTALHYAAENGNLEIVKLLLENGADINSQDKNGNTALHYAAENGNLEIVK 76 (89)
T ss_dssp HHHHHHTTTHHHHHHHHHTTSTTTS----SSBHHHHHHHTTTHHHHHHHHHTTTCTT-BSTTSSBHHHHHHHTTHHHHHH
T ss_pred CHHHHHcCCHHHHHHHHHCcCCCCC----CCCHHHHHHHcCCHHHHHHHHHhcccccccCCCCCCHHHHHHHcCCHHHHH
Confidence 7999999999999999999998886 899999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCCCCCC
Q 022481 282 KMEEDKNNVGSTT 294 (296)
Q Consensus 282 ~Ll~~gadi~~~n 294 (296)
+|+++|++++.+|
T Consensus 77 ~Ll~~g~~~~~~n 89 (89)
T PF12796_consen 77 LLLEHGADVNIRN 89 (89)
T ss_dssp HHHHTTT-TTSS-
T ss_pred HHHHcCCCCCCcC
Confidence 9999999999886
No 4
>PHA02743 Viral ankyrin protein; Provisional
Probab=99.85 E-value=4.4e-21 Score=156.62 Aligned_cols=116 Identities=21% Similarity=0.173 Sum_probs=104.6
Q ss_pred CcccccCCCCCCCCCCCCCccccccChHHHHHHHHcCCHH---HHHHHHHcCCCCcccC-CCCCcHHHHHHHcCCHHHHH
Q 022481 173 NFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAA---AVKKLLSEGVDANFCD-KQGMSLLHLAALFNRTDIAF 248 (296)
Q Consensus 173 ~~~~ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~---~v~~Ll~~gadvn~~d-~~g~TpLh~A~~~g~~~iv~ 248 (296)
++++|+..|..++..+..+++ +||+|+..|+.+ ++++|++.|+++|.+| ..|.||||+|+..++.++++
T Consensus 39 ~~~~l~~~g~~~~~~d~~g~t-------~Lh~Aa~~g~~~~~~~i~~Ll~~Gadin~~d~~~g~TpLh~A~~~g~~~iv~ 111 (166)
T PHA02743 39 VAPFISGDGHLLHRYDHHGRQ-------CTHMVAWYDRANAVMKIELLVNMGADINARELGTGNTLLHIAASTKNYELAE 111 (166)
T ss_pred HHHHHhhcchhhhccCCCCCc-------HHHHHHHhCccCHHHHHHHHHHcCCCCCCCCCCCCCcHHHHHHHhCCHHHHH
Confidence 345677888888877777666 999999998765 4899999999999998 58999999999999999999
Q ss_pred HHHH-CCCCCCccCCCCCCHhhHhhhcCcHHHHHHHHHcCCCCCCCCC
Q 022481 249 ILME-SGANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKNNVGSTTS 295 (296)
Q Consensus 249 ~LL~-~ga~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gadi~~~n~ 295 (296)
+|++ .|++++.+|..|+||||+|+..++.+++++|+++|++++.++.
T Consensus 112 ~Ll~~~gad~~~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~ 159 (166)
T PHA02743 112 WLCRQLGVNLGAINYQHETAYHIAYKMRDRRMMEILRANGAVCDDPLS 159 (166)
T ss_pred HHHhccCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCccc
Confidence 9995 7999999999999999999999999999999999999998875
No 5
>PHA02791 ankyrin-like protein; Provisional
Probab=99.85 E-value=3.5e-21 Score=169.54 Aligned_cols=119 Identities=15% Similarity=0.063 Sum_probs=77.9
Q ss_pred CCCcCcccccCCCCCCCCCCCCCccccccChHHHHHHHHcCCHHHHHHHHHcCCCCcccC-CCCCcHHHHHHHcCCHHHH
Q 022481 169 TSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCD-KQGMSLLHLAALFNRTDIA 247 (296)
Q Consensus 169 ~~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~gadvn~~d-~~g~TpLh~A~~~g~~~iv 247 (296)
+...++++|+..|++++..+..++ .||||+|+..|+.++|++||+++.+. .| ..|.||||+|+.+|+.+++
T Consensus 105 g~~eivk~Ll~~gadin~~~~~g~------~TpL~~Aa~~g~~eivk~LL~~~~~~--~d~~~g~TpLh~Aa~~g~~eiv 176 (284)
T PHA02791 105 GNMQTVKLFVKKNWRLMFYGKTGW------KTSFYHAVMLNDVSIVSYFLSEIPST--FDLAILLSCIHITIKNGHVDMM 176 (284)
T ss_pred CCHHHHHHHHHCCCCcCccCCCCC------cHHHHHHHHcCCHHHHHHHHhcCCcc--cccccCccHHHHHHHcCCHHHH
Confidence 344444555555554444333322 13666666666666666666654332 12 2467788888888888888
Q ss_pred HHHHHCCCCCCccCCCCCCH-hhHhhhcCcHHHHHHHHHcCCCCCCCCC
Q 022481 248 FILMESGANMDCKNAQGESP-LDCAPVTLQYKMRQKMEEDKNNVGSTTS 295 (296)
Q Consensus 248 ~~LL~~ga~~~~~d~~g~Tp-L~~A~~~g~~~iv~~Ll~~gadi~~~n~ 295 (296)
++||++||++|.+|..|.|| ||+|+..|+.++|++|+++||+++++|.
T Consensus 177 ~lLL~~gAd~n~~d~~g~t~~L~~Aa~~~~~e~v~lLl~~Ga~in~~~~ 225 (284)
T PHA02791 177 ILLLDYMTSTNTNNSLLFIPDIKLAIDNKDLEMLQALFKYDINIYSVNL 225 (284)
T ss_pred HHHHHCCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCccCcc
Confidence 88888888888887777766 8888888888888888888888877763
No 6
>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]
Probab=99.85 E-value=1.7e-21 Score=180.23 Aligned_cols=125 Identities=19% Similarity=0.206 Sum_probs=77.2
Q ss_pred CCCCCCCCcCcccccCC-CCCCCCCCCCCccccccChHHHHHHHHcCCHHHHHHHHHcCCCCcccC-CCCCcHHHHHHHc
Q 022481 164 RSRGSTSNSNFSSIFNP-GQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCD-KQGMSLLHLAALF 241 (296)
Q Consensus 164 ~~~~~~~~~~~~~ll~~-g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~gadvn~~d-~~g~TpLh~A~~~ 241 (296)
.+..-+..+.++.|++. |..++..|..+-+ +||||+.+++++++++||++|+++|..+ ..+.||||||+++
T Consensus 50 ~A~q~G~l~~v~~lve~~g~~v~~~D~~g~t-------lLHWAAiNNrl~v~r~li~~gadvn~~gG~l~stPLHWAar~ 122 (600)
T KOG0509|consen 50 KATQYGELETVKELVESEGESVNNPDREGVT-------LLHWAAINNRLDVARYLISHGADVNAIGGVLGSTPLHWAARN 122 (600)
T ss_pred hHhhcchHHHHHHHHhhcCcCCCCCCcCCcc-------ceeHHHHcCcHHHHHHHHHcCCCccccCCCCCCCcchHHHHc
Confidence 33444444555566655 6666655554444 6666666666666666666666666665 4456666666666
Q ss_pred CCHHHHHHHHHCCCCCCccCCCCCCHhhHhhhcCcHHHHHHHHHcCCCCCCCCC
Q 022481 242 NRTDIAFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKNNVGSTTS 295 (296)
Q Consensus 242 g~~~iv~~LL~~ga~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gadi~~~n~ 295 (296)
|+..+|.+||++|||++++|.+|.||||+|+..|+.-+|-+||.+|+|+|.+|+
T Consensus 123 G~~~vv~lLlqhGAdpt~~D~~G~~~lHla~~~~~~~~vayll~~~~d~d~~D~ 176 (600)
T KOG0509|consen 123 GHISVVDLLLQHGADPTLKDKQGLTPLHLAAQFGHTALVAYLLSKGADIDLRDN 176 (600)
T ss_pred CcHHHHHHHHHcCCCCceecCCCCcHHHHHHHhCchHHHHHHHHhcccCCCcCC
Confidence 666666666666666666666666666666666666666666666666666654
No 7
>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]
Probab=99.84 E-value=3.9e-21 Score=177.87 Aligned_cols=122 Identities=25% Similarity=0.296 Sum_probs=112.8
Q ss_pred CCCCCcCcccccCCCCCCCCCCCCCccccccChHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHH
Q 022481 167 GSTSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDI 246 (296)
Q Consensus 167 ~~~~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~i 246 (296)
-....+++++|++.|+++|....... .||||||+++|++.+|++|+++|||++.+|.+|.|+||+|+++|++-+
T Consensus 87 iNNrl~v~r~li~~gadvn~~gG~l~------stPLHWAar~G~~~vv~lLlqhGAdpt~~D~~G~~~lHla~~~~~~~~ 160 (600)
T KOG0509|consen 87 INNRLDVARYLISHGADVNAIGGVLG------STPLHWAARNGHISVVDLLLQHGADPTLKDKQGLTPLHLAAQFGHTAL 160 (600)
T ss_pred HcCcHHHHHHHHHcCCCccccCCCCC------CCcchHHHHcCcHHHHHHHHHcCCCCceecCCCCcHHHHHHHhCchHH
Confidence 34566789999999999999874322 259999999999999999999999999999999999999999999999
Q ss_pred HHHHHHCCCCCCccCCCCCCHhhHhhhcCcHHHHHHHHHcCCCCCCCC
Q 022481 247 AFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKNNVGSTT 294 (296)
Q Consensus 247 v~~LL~~ga~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gadi~~~n 294 (296)
|-+||.+|+|+|.+|.+|+||||+|+.+|....++.||..|++++.+|
T Consensus 161 vayll~~~~d~d~~D~~grTpLmwAaykg~~~~v~~LL~f~a~~~~~d 208 (600)
T KOG0509|consen 161 VAYLLSKGADIDLRDNNGRTPLMWAAYKGFALFVRRLLKFGASLLLTD 208 (600)
T ss_pred HHHHHHhcccCCCcCCCCCCHHHHHHHhcccHHHHHHHHhcccccccc
Confidence 999999999999999999999999999999888999999999998887
No 8
>PHA02859 ankyrin repeat protein; Provisional
Probab=99.83 E-value=2.3e-20 Score=157.99 Aligned_cols=120 Identities=17% Similarity=0.158 Sum_probs=106.9
Q ss_pred CCCcCcccccCCCCCCCCCCC-CCccccccChHHHHHHHHc---CCHHHHHHHHHcCCCCcccCCCCCcHHHHHHH--cC
Q 022481 169 TSNSNFSSIFNPGQVTNGATD-KPRMEYEVNGEGLRDAIKN---GDAAAVKKLLSEGVDANFCDKQGMSLLHLAAL--FN 242 (296)
Q Consensus 169 ~~~~~~~~ll~~g~~~~~~~~-~~~~~~~~~~t~Lh~A~~~---g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~--~g 242 (296)
+...++++|++.|++++..+. .+.+ |||+|+.. ++.+++++|+++|+++|.+|..|.||||+|+. .+
T Consensus 64 ~~~eiv~~Ll~~gadvn~~~~~~g~T-------pLh~a~~~~~~~~~eiv~~Ll~~gadin~~d~~G~TpLh~a~~~~~~ 136 (209)
T PHA02859 64 VNVEILKFLIENGADVNFKTRDNNLS-------ALHHYLSFNKNVEPEILKILIDSGSSITEEDEDGKNLLHMYMCNFNV 136 (209)
T ss_pred CCHHHHHHHHHCCCCCCccCCCCCCC-------HHHHHHHhCccccHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhccC
Confidence 356789999999999998763 4555 99998764 57999999999999999999999999999976 46
Q ss_pred CHHHHHHHHHCCCCCCccCCCCCCHhhH-hhhcCcHHHHHHHHHcCCCCCCCCC
Q 022481 243 RTDIAFILMESGANMDCKNAQGESPLDC-APVTLQYKMRQKMEEDKNNVGSTTS 295 (296)
Q Consensus 243 ~~~iv~~LL~~ga~~~~~d~~g~TpL~~-A~~~g~~~iv~~Ll~~gadi~~~n~ 295 (296)
+.+++++|+++|++++.+|..|.||||. |+..++.+++++|+++|++++.+|.
T Consensus 137 ~~~iv~~Li~~gadin~~d~~g~t~Lh~~a~~~~~~~iv~~Ll~~Gadi~~~d~ 190 (209)
T PHA02859 137 RINVIKLLIDSGVSFLNKDFDNNNILYSYILFHSDKKIFDFLTSLGIDINETNK 190 (209)
T ss_pred CHHHHHHHHHcCCCcccccCCCCcHHHHHHHhcCCHHHHHHHHHcCCCCCCCCC
Confidence 8999999999999999999999999995 5668899999999999999999875
No 9
>KOG0508 consensus Ankyrin repeat protein [General function prediction only]
Probab=99.83 E-value=2.1e-21 Score=173.61 Aligned_cols=124 Identities=21% Similarity=0.286 Sum_probs=115.5
Q ss_pred ccCCCCCCCCcCcccccCCCCCCCCCCCCCccccccChHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHc
Q 022481 162 TARSRGSTSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALF 241 (296)
Q Consensus 162 ~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~ 241 (296)
...++..+...+++.|+..|+.+|.......+ ||..||.-|++++||+|+++|+|++..|..|.|.||+|+..
T Consensus 88 LWaAsaAGHl~vVk~L~~~ga~VN~tT~TNSt-------PLraACfDG~leivKyLvE~gad~~IanrhGhTcLmIa~yk 160 (615)
T KOG0508|consen 88 LWAASAAGHLEVVKLLLRRGASVNDTTRTNST-------PLRAACFDGHLEIVKYLVEHGADPEIANRHGHTCLMIACYK 160 (615)
T ss_pred hhHHhccCcHHHHHHHHHhcCccccccccCCc-------cHHHHHhcchhHHHHHHHHcCCCCcccccCCCeeEEeeecc
Confidence 44556677888999999999999987766555 99999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHCCCCCCccCCCCCCHhhHhhhcCcHHHHHHHHHcCCCCCC
Q 022481 242 NRTDIAFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKNNVGS 292 (296)
Q Consensus 242 g~~~iv~~LL~~ga~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gadi~~ 292 (296)
|+.+|+++||+.|||+|.++..|+|+||.++..|+.+++++|+.+|+.++.
T Consensus 161 Gh~~I~qyLle~gADvn~ks~kGNTALH~caEsG~vdivq~Ll~~ga~i~~ 211 (615)
T KOG0508|consen 161 GHVDIAQYLLEQGADVNAKSYKGNTALHDCAESGSVDIVQLLLKHGAKIDV 211 (615)
T ss_pred CchHHHHHHHHhCCCcchhcccCchHHHhhhhcccHHHHHHHHhCCceeee
Confidence 999999999999999999999999999999999999999999999997764
No 10
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=99.83 E-value=1.1e-21 Score=136.30 Aligned_cols=65 Identities=42% Similarity=0.847 Sum_probs=49.5
Q ss_pred CCCCCccccccccccccccccccccccccccceEcCCCCCCceecC--CCCCCCceeccccchhhhc
Q 022481 4 EPPAFQEATRCDVCKCSFNTFRRRHHCRCCGRTLCHEHSSDQMTLP--QFGIHTNVRVCADCFNSSS 68 (296)
Q Consensus 4 ~w~~~~~~~~C~~C~~~f~~~~r~hhCr~Cg~~~C~~c~~~~~~~~--~~~~~~~~rvC~~C~~~~~ 68 (296)
.|+++.++..|+.|+++|++|+||||||.||++||..|+.++..++ ..+..+++|||+.||..++
T Consensus 2 ~W~~d~~~~~C~~C~~~F~~~~rrhhCr~CG~~vC~~Cs~~~~~~~~~~~~~~~~~RvC~~C~~~~~ 68 (69)
T PF01363_consen 2 HWVPDSEASNCMICGKKFSLFRRRHHCRNCGRVVCSSCSSQRIPLPTPSSGSGEPVRVCDSCYSKLQ 68 (69)
T ss_dssp -SSSGGG-SB-TTT--B-BSSS-EEE-TTT--EEECCCS-EEEEET--GGTESEEEEE-HHHHHHHH
T ss_pred CcCCCCCCCcCcCcCCcCCCceeeEccCCCCCEECCchhCCEEcccccccCCCCcCEECHHHHHHhc
Confidence 6999999999999999999999999999999999999999999888 5666789999999999875
No 11
>PHA02791 ankyrin-like protein; Provisional
Probab=99.83 E-value=2.9e-20 Score=163.75 Aligned_cols=116 Identities=16% Similarity=0.127 Sum_probs=81.9
Q ss_pred CCCCCCCcCcccccCCCCCCCCCCCCCccccccChHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCH
Q 022481 165 SRGSTSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRT 244 (296)
Q Consensus 165 ~~~~~~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~ 244 (296)
++..+...++++|+..|++++..+ +.||||+|+..|+.+++++|++.|++++.+|..|+||||+|+..|+.
T Consensus 37 Aa~~g~~eiv~~Ll~~ga~~n~~d---------~~TpLh~Aa~~g~~eiV~lLL~~Gadvn~~d~~G~TpLh~Aa~~g~~ 107 (284)
T PHA02791 37 AIADNNVRLVCTLLNAGALKNLLE---------NEFPLHQAATLEDTKIVKILLFSGMDDSQFDDKGNTALYYAVDSGNM 107 (284)
T ss_pred HHHcCCHHHHHHHHHCcCCCcCCC---------CCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCH
Confidence 334455566677777776665432 13477777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHCCCCCCccCCCCC-CHhhHhhhcCcHHHHHHHHHcCCC
Q 022481 245 DIAFILMESGANMDCKNAQGE-SPLDCAPVTLQYKMRQKMEEDKNN 289 (296)
Q Consensus 245 ~iv~~LL~~ga~~~~~d~~g~-TpL~~A~~~g~~~iv~~Ll~~gad 289 (296)
+++++|+++|++++.++..|+ ||||+|+..|+.+++++|+++|++
T Consensus 108 eivk~Ll~~gadin~~~~~g~~TpL~~Aa~~g~~eivk~LL~~~~~ 153 (284)
T PHA02791 108 QTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPS 153 (284)
T ss_pred HHHHHHHHCCCCcCccCCCCCcHHHHHHHHcCCHHHHHHHHhcCCc
Confidence 777777777777777777664 677777777777777777777654
No 12
>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]
Probab=99.82 E-value=2.9e-20 Score=151.56 Aligned_cols=106 Identities=23% Similarity=0.181 Sum_probs=98.1
Q ss_pred CCCCCCCCCCccccccChHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCccC
Q 022481 182 QVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN 261 (296)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~iv~~LL~~ga~~~~~d 261 (296)
..+|..|..| -|||+||+..|++++|++||+.|+|++...++..|+|++|...|.++||++||+++.|+|..|
T Consensus 151 n~VN~~De~G-------fTpLiWAaa~G~i~vV~fLL~~GAdp~~lgk~resALsLAt~ggytdiV~lLL~r~vdVNvyD 223 (296)
T KOG0502|consen 151 NKVNACDEFG-------FTPLIWAAAKGHIPVVQFLLNSGADPDALGKYRESALSLATRGGYTDIVELLLTREVDVNVYD 223 (296)
T ss_pred ccccCccccC-------chHhHHHHhcCchHHHHHHHHcCCChhhhhhhhhhhHhHHhcCChHHHHHHHHhcCCCcceec
Confidence 3445555544 459999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHhhHhhhcCcHHHHHHHHHcCCCCCCCC
Q 022481 262 AQGESPLDCAPVTLQYKMRQKMEEDKNNVGSTT 294 (296)
Q Consensus 262 ~~g~TpL~~A~~~g~~~iv~~Ll~~gadi~~~n 294 (296)
++|-|||-+|++.|+.++++.||+.|||++..+
T Consensus 224 wNGgTpLlyAvrgnhvkcve~Ll~sGAd~t~e~ 256 (296)
T KOG0502|consen 224 WNGGTPLLYAVRGNHVKCVESLLNSGADVTQED 256 (296)
T ss_pred cCCCceeeeeecCChHHHHHHHHhcCCCccccc
Confidence 999999999999999999999999999998765
No 13
>PHA02878 ankyrin repeat protein; Provisional
Probab=99.82 E-value=4.2e-20 Score=175.16 Aligned_cols=116 Identities=26% Similarity=0.300 Sum_probs=99.1
Q ss_pred cCcccccCCCCCCCCCCCC-CccccccChHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHH
Q 022481 172 SNFSSIFNPGQVTNGATDK-PRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFIL 250 (296)
Q Consensus 172 ~~~~~ll~~g~~~~~~~~~-~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~iv~~L 250 (296)
.++++|++.|++++..+.. +.+ |||+|+..|+.+++++|+++|++++..|..|+||||+|+..++.+++++|
T Consensus 148 ~iv~~Ll~~gadin~~~~~~g~t-------pLh~A~~~~~~~iv~~Ll~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~L 220 (477)
T PHA02878 148 EITKLLLSYGADINMKDRHKGNT-------ALHYATENKDQRLTELLLSYGANVNIPDKTNNSPLHHAVKHYNKPIVHIL 220 (477)
T ss_pred HHHHHHHHcCCCCCccCCCCCCC-------HHHHHHhCCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCCHHHHHHH
Confidence 3678888888888887766 555 89999998999999999888888888888889999999888888999999
Q ss_pred HHCCCCCCccCCCCCCHhhHhhhc-CcHHHHHHHHHcCCCCCCCC
Q 022481 251 MESGANMDCKNAQGESPLDCAPVT-LQYKMRQKMEEDKNNVGSTT 294 (296)
Q Consensus 251 L~~ga~~~~~d~~g~TpL~~A~~~-g~~~iv~~Ll~~gadi~~~n 294 (296)
+++|++++.+|..|+||||+|+.. ++.+++++|+++|++++.++
T Consensus 221 l~~ga~in~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~gadvn~~~ 265 (477)
T PHA02878 221 LENGASTDARDKCGNTPLHISVGYCKDYDILKLLLEHGVDVNAKS 265 (477)
T ss_pred HHcCCCCCCCCCCCCCHHHHHHHhcCCHHHHHHHHHcCCCCCccC
Confidence 988999988888899999988865 67888888888888888765
No 14
>PHA02875 ankyrin repeat protein; Provisional
Probab=99.81 E-value=7.1e-20 Score=170.51 Aligned_cols=117 Identities=17% Similarity=0.143 Sum_probs=56.7
Q ss_pred CCCcCcccccCCCCCCCCCCCCCccccccChHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHH
Q 022481 169 TSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAF 248 (296)
Q Consensus 169 ~~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~iv~ 248 (296)
+..+++++|++.|++++..+..+.+ |||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.++++
T Consensus 113 ~~~~iv~~Ll~~gad~~~~~~~g~t-------pLh~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~g~~eiv~ 185 (413)
T PHA02875 113 KKLDIMKLLIARGADPDIPNTDKFS-------PLHLAVMMGDIKGIELLIDHKACLDIEDCCGCTPLIIAMAKGDIAICK 185 (413)
T ss_pred CCHHHHHHHHhCCCCCCCCCCCCCC-------HHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHH
Confidence 3344444444444444444433333 555555555555555555555555555555555555555555555555
Q ss_pred HHHHCCCCCCccCCCCC-CHhhHhhhcCcHHHHHHHHHcCCCCCC
Q 022481 249 ILMESGANMDCKNAQGE-SPLDCAPVTLQYKMRQKMEEDKNNVGS 292 (296)
Q Consensus 249 ~LL~~ga~~~~~d~~g~-TpL~~A~~~g~~~iv~~Ll~~gadi~~ 292 (296)
+|+++|++++..+..|. ||||+|+..|+.+++++|+++|+|+++
T Consensus 186 ~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~iv~~Ll~~gad~n~ 230 (413)
T PHA02875 186 MLLDSGANIDYFGKNGCVAALCYAIENNKIDIVRLFIKRGADCNI 230 (413)
T ss_pred HHHhCCCCCCcCCCCCCchHHHHHHHcCCHHHHHHHHHCCcCcch
Confidence 55555555554444432 444445555555555555555555443
No 15
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=99.81 E-value=6.2e-20 Score=184.21 Aligned_cols=129 Identities=19% Similarity=0.188 Sum_probs=114.2
Q ss_pred ccccCCCCCCCCcCcccccCCCCCCCCCCCCCccccccChHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHH
Q 022481 160 ENTARSRGSTSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAA 239 (296)
Q Consensus 160 ~~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~ 239 (296)
.+...++..++...++.|+..|+++|..+..+.+ |||+|+..|+.+++++|+++|+++|.+|.+|+||||+|+
T Consensus 527 ~~L~~Aa~~g~~~~l~~Ll~~G~d~n~~d~~G~T-------pLh~Aa~~g~~~~v~~Ll~~gadin~~d~~G~TpL~~A~ 599 (823)
T PLN03192 527 SNLLTVASTGNAALLEELLKAKLDPDIGDSKGRT-------PLHIAASKGYEDCVLVLLKHACNVHIRDANGNTALWNAI 599 (823)
T ss_pred hHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCC-------HHHHHHHcChHHHHHHHHhcCCCCCCcCCCCCCHHHHHH
Confidence 3345556677888899999999999998887776 999999999999999999999999999999999988665
Q ss_pred H-------------------------------cCCHHHHHHHHHCCCCCCccCCCCCCHhhHhhhcCcHHHHHHHHHcCC
Q 022481 240 L-------------------------------FNRTDIAFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKN 288 (296)
Q Consensus 240 ~-------------------------------~g~~~iv~~LL~~ga~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga 288 (296)
. .|+.+++++|+++|+++|.+|.+|+||||+|+..|+.+++++|+++||
T Consensus 600 ~~g~~~iv~~L~~~~~~~~~~~~~~~L~~Aa~~g~~~~v~~Ll~~Gadin~~d~~G~TpLh~A~~~g~~~iv~~Ll~~GA 679 (823)
T PLN03192 600 SAKHHKIFRILYHFASISDPHAAGDLLCTAAKRNDLTAMKELLKQGLNVDSEDHQGATALQVAMAEDHVDMVRLLIMNGA 679 (823)
T ss_pred HhCCHHHHHHHHhcCcccCcccCchHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCcHHHHHHHHHcCC
Confidence 4 455566777888999999999999999999999999999999999999
Q ss_pred CCCCCCC
Q 022481 289 NVGSTTS 295 (296)
Q Consensus 289 di~~~n~ 295 (296)
|++..|+
T Consensus 680 dv~~~~~ 686 (823)
T PLN03192 680 DVDKANT 686 (823)
T ss_pred CCCCCCC
Confidence 9998874
No 16
>PHA02875 ankyrin repeat protein; Provisional
Probab=99.80 E-value=1.7e-19 Score=167.96 Aligned_cols=128 Identities=16% Similarity=0.179 Sum_probs=114.5
Q ss_pred cccCCCCCCCCcCcccccCCCCCCCCC-CCCCccccccChHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHH
Q 022481 161 NTARSRGSTSNSNFSSIFNPGQVTNGA-TDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAA 239 (296)
Q Consensus 161 ~~~~~~~~~~~~~~~~ll~~g~~~~~~-~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~ 239 (296)
+...+...+....++.|+..|...+.. +.. |.||||+|+..|+.+++++|+++|++++.++..|.||||+|+
T Consensus 71 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~-------g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~~~~g~tpLh~A~ 143 (413)
T PHA02875 71 ELHDAVEEGDVKAVEELLDLGKFADDVFYKD-------GMTPLHLATILKKLDIMKLLIARGADPDIPNTDKFSPLHLAV 143 (413)
T ss_pred HHHHHHHCCCHHHHHHHHHcCCcccccccCC-------CCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHH
Confidence 345556667888899999998766543 333 445999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHCCCCCCccCCCCCCHhhHhhhcCcHHHHHHHHHcCCCCCCCCC
Q 022481 240 LFNRTDIAFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKNNVGSTTS 295 (296)
Q Consensus 240 ~~g~~~iv~~LL~~ga~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gadi~~~n~ 295 (296)
..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++..+.
T Consensus 144 ~~~~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~g~~eiv~~Ll~~ga~~n~~~~ 199 (413)
T PHA02875 144 MMGDIKGIELLIDHKACLDIEDCCGCTPLIIAMAKGDIAICKMLLDSGANIDYFGK 199 (413)
T ss_pred HcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCcCCC
Confidence 99999999999999999999999999999999999999999999999999987653
No 17
>PHA03095 ankyrin-like protein; Provisional
Probab=99.80 E-value=2.4e-19 Score=169.53 Aligned_cols=123 Identities=19% Similarity=0.263 Sum_probs=104.3
Q ss_pred CCCCCCcCcccccCCCCCCCCCCCCCccccccChHHHHHHHHcC---CHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcC
Q 022481 166 RGSTSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNG---DAAAVKKLLSEGVDANFCDKQGMSLLHLAALFN 242 (296)
Q Consensus 166 ~~~~~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g---~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g 242 (296)
......++++.|++.|++++..+..+.+ |||+|+..+ +.+++++|++.|+++|.+|..|+||||+|+..+
T Consensus 22 ~~~~~~~~v~~Ll~~ga~vn~~~~~g~t-------~Lh~a~~~~~~~~~~iv~~Ll~~Gadin~~~~~g~TpLh~A~~~~ 94 (471)
T PHA03095 22 ASNVTVEEVRRLLAAGADVNFRGEYGKT-------PLHLYLHYSSEKVKDIVRLLLEAGADVNAPERCGFTPLHLYLYNA 94 (471)
T ss_pred CCCCCHHHHHHHHHcCCCcccCCCCCCC-------HHHHHHHhcCCChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcC
Confidence 3445566788888999988887776666 999999888 889999999999999999999999999999998
Q ss_pred -CHHHHHHHHHCCCCCCccCCCCCCHhhHhh--hcCcHHHHHHHHHcCCCCCCCCC
Q 022481 243 -RTDIAFILMESGANMDCKNAQGESPLDCAP--VTLQYKMRQKMEEDKNNVGSTTS 295 (296)
Q Consensus 243 -~~~iv~~LL~~ga~~~~~d~~g~TpL~~A~--~~g~~~iv~~Ll~~gadi~~~n~ 295 (296)
+.+++++|+++|++++.+|..|+||||+|+ ..++.+++++|+++|++++.+|.
T Consensus 95 ~~~~iv~lLl~~ga~in~~~~~g~tpLh~a~~~~~~~~~iv~~Ll~~gad~~~~d~ 150 (471)
T PHA03095 95 TTLDVIKLLIKAGADVNAKDKVGRTPLHVYLSGFNINPKVIRLLLRKGADVNALDL 150 (471)
T ss_pred CcHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhCCcCCHHHHHHHHHcCCCCCccCC
Confidence 588999999999999999999999999988 55678899999999999887664
No 18
>PHA02874 ankyrin repeat protein; Provisional
Probab=99.80 E-value=3.7e-19 Score=166.78 Aligned_cols=118 Identities=29% Similarity=0.359 Sum_probs=108.4
Q ss_pred CcCcccccCCCCCCCCCCCCCccccccChHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHH
Q 022481 171 NSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFIL 250 (296)
Q Consensus 171 ~~~~~~ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~iv~~L 250 (296)
...++.|+..|++++..+..+.+ |||+|+..|+.++|++|+++|++++.+|..|.||||+|+..++.+++++|
T Consensus 104 ~~~i~~ll~~g~d~n~~~~~g~T-------~Lh~A~~~~~~~~v~~Ll~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~L 176 (434)
T PHA02874 104 KDMIKTILDCGIDVNIKDAELKT-------FLHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPIHIAIKHNFFDIIKLL 176 (434)
T ss_pred HHHHHHHHHCcCCCCCCCCCCcc-------HHHHHHHCCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHCCcHHHHHHH
Confidence 35677888888888887766665 99999999999999999999999999999999999999999999999999
Q ss_pred HHCCCCCCccCCCCCCHhhHhhhcCcHHHHHHHHHcCCCCCCCCC
Q 022481 251 MESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKNNVGSTTS 295 (296)
Q Consensus 251 L~~ga~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gadi~~~n~ 295 (296)
+++|++++..|..|+||||+|+..|+.+++++|+++|++++.++.
T Consensus 177 l~~g~~~n~~~~~g~tpL~~A~~~g~~~iv~~Ll~~g~~i~~~~~ 221 (434)
T PHA02874 177 LEKGAYANVKDNNGESPLHNAAEYGDYACIKLLIDHGNHIMNKCK 221 (434)
T ss_pred HHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCcCCCC
Confidence 999999999999999999999999999999999999999887653
No 19
>PHA02798 ankyrin-like protein; Provisional
Probab=99.79 E-value=2.4e-19 Score=170.51 Aligned_cols=120 Identities=19% Similarity=0.205 Sum_probs=109.8
Q ss_pred CCCCcCcccccCCCCCCCCCCCCCccccccChHHHHHHHHc-----CCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcC
Q 022481 168 STSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKN-----GDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFN 242 (296)
Q Consensus 168 ~~~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~-----g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g 242 (296)
.....++++|++.|+++|..+..+.+ |||+|+.+ +..+++++|+++|+|+|.+|..|+||||+|+..+
T Consensus 48 ~~~~~iv~~Ll~~Gadvn~~d~~g~T-------pL~~~~~n~~~~~~~~~iv~~Ll~~GadiN~~d~~G~TpLh~a~~~~ 120 (489)
T PHA02798 48 SPSTDIVKLFINLGANVNGLDNEYST-------PLCTILSNIKDYKHMLDIVKILIENGADINKKNSDGETPLYCLLSNG 120 (489)
T ss_pred CCCHHHHHHHHHCCCCCCCCCCCCCC-------hHHHHHHhHHhHHhHHHHHHHHHHCCCCCCCCCCCcCcHHHHHHHcC
Confidence 34667899999999999998877776 99998864 6789999999999999999999999999999875
Q ss_pred ---CHHHHHHHHHCCCCCCccCCCCCCHhhHhhhcCc---HHHHHHHHHcCCCCCCCC
Q 022481 243 ---RTDIAFILMESGANMDCKNAQGESPLDCAPVTLQ---YKMRQKMEEDKNNVGSTT 294 (296)
Q Consensus 243 ---~~~iv~~LL~~ga~~~~~d~~g~TpL~~A~~~g~---~~iv~~Ll~~gadi~~~n 294 (296)
+.+++++|+++||+++.+|..|.||||+|+..++ .+++++|+++|+|++..+
T Consensus 121 ~~~~~~iv~~Ll~~Gadvn~~d~~g~tpL~~a~~~~~~~~~~vv~~Ll~~gadin~~~ 178 (489)
T PHA02798 121 YINNLEILLFMIENGADTTLLDKDGFTMLQVYLQSNHHIDIEIIKLLLEKGVDINTHN 178 (489)
T ss_pred CcChHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCcchHHHHHHHHHhCCCccccc
Confidence 7899999999999999999999999999999887 999999999999998765
No 20
>PHA02878 ankyrin repeat protein; Provisional
Probab=99.79 E-value=2.7e-19 Score=169.71 Aligned_cols=126 Identities=20% Similarity=0.238 Sum_probs=114.0
Q ss_pred cccCCCCCCCCcCcccccCCCCCCCCCCCCCccccccChHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHH
Q 022481 161 NTARSRGSTSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAAL 240 (296)
Q Consensus 161 ~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~ 240 (296)
+..-++..+...++++|+..|++++..+..+.+ |||+|+..|+.+++++|++.|++++.+|..|.||||+|+.
T Consensus 171 pLh~A~~~~~~~iv~~Ll~~gad~n~~d~~g~t-------pLh~A~~~~~~~iv~~Ll~~ga~in~~d~~g~TpLh~A~~ 243 (477)
T PHA02878 171 ALHYATENKDQRLTELLLSYGANVNIPDKTNNS-------PLHHAVKHYNKPIVHILLENGASTDARDKCGNTPLHISVG 243 (477)
T ss_pred HHHHHHhCCCHHHHHHHHHCCCCCCCcCCCCCC-------HHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHH
Confidence 344455567788899999999999988877776 9999999999999999999999999999999999999997
Q ss_pred c-CCHHHHHHHHHCCCCCCccCC-CCCCHhhHhhhcCcHHHHHHHHHcCCCCCCCCC
Q 022481 241 F-NRTDIAFILMESGANMDCKNA-QGESPLDCAPVTLQYKMRQKMEEDKNNVGSTTS 295 (296)
Q Consensus 241 ~-g~~~iv~~LL~~ga~~~~~d~-~g~TpL~~A~~~g~~~iv~~Ll~~gadi~~~n~ 295 (296)
. ++.+++++|+++|+++|.++. .|.||||+| .++.+++++|+++|||+|+.|.
T Consensus 244 ~~~~~~iv~~Ll~~gadvn~~~~~~g~TpLh~A--~~~~~~v~~Ll~~gadin~~d~ 298 (477)
T PHA02878 244 YCKDYDILKLLLEHGVDVNAKSYILGLTALHSS--IKSERKLKLLLEYGADINSLNS 298 (477)
T ss_pred hcCCHHHHHHHHHcCCCCCccCCCCCCCHHHHH--ccCHHHHHHHHHCCCCCCCcCC
Confidence 5 789999999999999999986 799999999 5678999999999999998874
No 21
>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]
Probab=99.79 E-value=2.5e-19 Score=151.67 Aligned_cols=118 Identities=24% Similarity=0.211 Sum_probs=105.5
Q ss_pred CcCcccccC-CCCCCCCCCCCCccccccChHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHH
Q 022481 171 NSNFSSIFN-PGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFI 249 (296)
Q Consensus 171 ~~~~~~ll~-~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~iv~~ 249 (296)
.-.+++-|+ ...+.|.-|+.+-. |||||++.|+..+|+.||.+|+.+|..+....||||+|+..||.++|+.
T Consensus 13 a~qvrlwld~tehdln~gddhgfs-------plhwaakegh~aivemll~rgarvn~tnmgddtplhlaaahghrdivqk 85 (448)
T KOG0195|consen 13 AFQVRLWLDDTEHDLNVGDDHGFS-------PLHWAAKEGHVAIVEMLLSRGARVNSTNMGDDTPLHLAAAHGHRDIVQK 85 (448)
T ss_pred eEEEEEEecCcccccccccccCcc-------hhhhhhhcccHHHHHHHHhcccccccccCCCCcchhhhhhcccHHHHHH
Confidence 333444443 44566666666666 9999999999999999999999999999999999999999999999999
Q ss_pred HHHCCCCCCccCCCCCCHhhHhhhcCcHHHHHHHHHcCCCCCCCCC
Q 022481 250 LMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKNNVGSTTS 295 (296)
Q Consensus 250 LL~~ga~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gadi~~~n~ 295 (296)
||++.+|+|+.|..|+||||||+..|+..+.+-|+..||.+++.|+
T Consensus 86 ll~~kadvnavnehgntplhyacfwgydqiaedli~~ga~v~icnk 131 (448)
T KOG0195|consen 86 LLSRKADVNAVNEHGNTPLHYACFWGYDQIAEDLISCGAAVNICNK 131 (448)
T ss_pred HHHHhcccchhhccCCCchhhhhhhcHHHHHHHHHhccceeeeccc
Confidence 9999999999999999999999999999999999999999998775
No 22
>PHA02859 ankyrin repeat protein; Provisional
Probab=99.79 E-value=2.2e-19 Score=151.97 Aligned_cols=124 Identities=15% Similarity=0.187 Sum_probs=102.8
Q ss_pred ccCCCCCCCCcCcccccCCCCCCCCCCCCCccccccChHHHHHHHHcC--CHHHHHHHHHcCCCCcccC-CCCCcHHHHH
Q 022481 162 TARSRGSTSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNG--DAAAVKKLLSEGVDANFCD-KQGMSLLHLA 238 (296)
Q Consensus 162 ~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g--~~~~v~~Ll~~gadvn~~d-~~g~TpLh~A 238 (296)
...+...+....++.|+.. .+..+..+ .||||+|+..+ +.+++++||++|+++|.++ ..|+||||+|
T Consensus 25 L~~A~~~~~~~~vk~Li~~---~n~~~~~g-------~TpLh~a~~~~~~~~eiv~~Ll~~gadvn~~~~~~g~TpLh~a 94 (209)
T PHA02859 25 LFYYVEKDDIEGVKKWIKF---VNDCNDLY-------ETPIFSCLEKDKVNVEILKFLIENGADVNFKTRDNNLSALHHY 94 (209)
T ss_pred HHHHHHhCcHHHHHHHHHh---hhccCccC-------CCHHHHHHHcCCCCHHHHHHHHHCCCCCCccCCCCCCCHHHHH
Confidence 3444455666777777754 33444444 45999999854 8999999999999999997 5899999998
Q ss_pred HHc---CCHHHHHHHHHCCCCCCccCCCCCCHhhHhhh--cCcHHHHHHHHHcCCCCCCCCC
Q 022481 239 ALF---NRTDIAFILMESGANMDCKNAQGESPLDCAPV--TLQYKMRQKMEEDKNNVGSTTS 295 (296)
Q Consensus 239 ~~~---g~~~iv~~LL~~ga~~~~~d~~g~TpL~~A~~--~g~~~iv~~Ll~~gadi~~~n~ 295 (296)
+.. ++.+++++|+++|+++|.+|..|.||||+|+. .++.+++++|+++|++++.+|.
T Consensus 95 ~~~~~~~~~eiv~~Ll~~gadin~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~gadin~~d~ 156 (209)
T PHA02859 95 LSFNKNVEPEILKILIDSGSSITEEDEDGKNLLHMYMCNFNVRINVIKLLIDSGVSFLNKDF 156 (209)
T ss_pred HHhCccccHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCcccccC
Confidence 764 47999999999999999999999999999876 4689999999999999998874
No 23
>PHA02946 ankyin-like protein; Provisional
Probab=99.79 E-value=5.2e-19 Score=165.82 Aligned_cols=118 Identities=21% Similarity=0.218 Sum_probs=98.2
Q ss_pred CCcCcccccCCCCCCCCCCCCCccccccChHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcC--CHHHH
Q 022481 170 SNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFN--RTDIA 247 (296)
Q Consensus 170 ~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g--~~~iv 247 (296)
...+++.|++.|+++|..+..+.+ |||+|+..|+.++|++||++|+++|.+|..|.||||+|+..+ ..+++
T Consensus 51 ~~~iv~~Ll~~Gadvn~~d~~G~T-------pLh~Aa~~g~~eiv~lLL~~GAdin~~d~~g~TpLh~A~~~~~~~~e~v 123 (446)
T PHA02946 51 DERFVEELLHRGYSPNETDDDGNY-------PLHIASKINNNRIVAMLLTHGADPNACDKQHKTPLYYLSGTDDEVIERI 123 (446)
T ss_pred CHHHHHHHHHCcCCCCccCCCCCC-------HHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCchHHHH
Confidence 345788999999999998877776 999999999999999999999999999999999999998765 47889
Q ss_pred HHHHHCCCCCCc-cCCCCCCHhhHhhhcCcHHHHHHHHHcCCCCCCCCC
Q 022481 248 FILMESGANMDC-KNAQGESPLDCAPVTLQYKMRQKMEEDKNNVGSTTS 295 (296)
Q Consensus 248 ~~LL~~ga~~~~-~d~~g~TpL~~A~~~g~~~iv~~Ll~~gadi~~~n~ 295 (296)
++|+++|++++. .|..|.|||| |+..++.+++++|+++|++++.+|+
T Consensus 124 ~lLl~~Gadin~~~d~~g~tpL~-aa~~~~~~vv~~Ll~~gad~~~~d~ 171 (446)
T PHA02946 124 NLLVQYGAKINNSVDEEGCGPLL-ACTDPSERVFKKIMSIGFEARIVDK 171 (446)
T ss_pred HHHHHcCCCcccccCCCCCcHHH-HHHCCChHHHHHHHhccccccccCC
Confidence 999999998885 5777888886 4455677777777777777776653
No 24
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the PHA02884 ankyrin repeat protein; Provisional
Probab=99.78 E-value=1.5e-18 Score=153.13 Aligned_cols=118 Identities=17% Similarity=0.160 Sum_probs=76.4
Q ss_pred CCCCCCCcCcccccCCCCCCCCCCCCCccccccChHHHHHHHHcCCHHHHHHHHHcCCCCccc-CCCCCcHHHHHHHcCC
Q 022481 165 SRGSTSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFC-DKQGMSLLHLAALFNR 243 (296)
Q Consensus 165 ~~~~~~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~gadvn~~-d~~g~TpLh~A~~~g~ 243 (296)
+...+..++++.|++.|++++..+... ...|.||||+|+..|+.+++++|+++|+++|.. +..|.||||+|+..++
T Consensus 40 A~~~~~~eivk~LL~~GAdiN~~~~~s---d~~g~TpLh~Aa~~~~~eivklLL~~GADVN~~~~~~g~TpLh~Aa~~~~ 116 (300)
T PHA02884 40 SIKFHYTDIIDAILKLGADPEAPFPLS---ENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRYAEEAKITPLYISVLHGC 116 (300)
T ss_pred HHHcCCHHHHHHHHHCCCCccccCccc---CCCCCCHHHHHHHcCCHHHHHHHHHcCCCcCcccCCCCCCHHHHHHHcCC
Confidence 334455566777777777776653200 012334777777777777777777777777764 3457777777777777
Q ss_pred HHHHHHHHHCCCCCCccCCCCCCHhhHhhhcCcHHHHHHHHH
Q 022481 244 TDIAFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEE 285 (296)
Q Consensus 244 ~~iv~~LL~~ga~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~ 285 (296)
.+++++|+++|++++.+|..|.||||+|+..++.+++.++..
T Consensus 117 ~eivklLL~~GAdin~kd~~G~TpL~~A~~~~~~~~~~~~~~ 158 (300)
T PHA02884 117 LKCLEILLSYGADINIQTNDMVTPIELALMICNNFLAFMICD 158 (300)
T ss_pred HHHHHHHHHCCCCCCCCCCCCCCHHHHHHHhCChhHHHHhcC
Confidence 777777777777777777777777777777666666655543
No 26
>PHA02736 Viral ankyrin protein; Provisional
Probab=99.78 E-value=3.6e-19 Score=143.51 Aligned_cols=96 Identities=21% Similarity=0.169 Sum_probs=88.7
Q ss_pred cChHHHHHHHHcCCH---HHHHHHHHcCCCCcccC-CCCCcHHHHHHHcCCHHHHHHHHHC-CCCCCccCCCCCCHhhHh
Q 022481 197 VNGEGLRDAIKNGDA---AAVKKLLSEGVDANFCD-KQGMSLLHLAALFNRTDIAFILMES-GANMDCKNAQGESPLDCA 271 (296)
Q Consensus 197 ~~~t~Lh~A~~~g~~---~~v~~Ll~~gadvn~~d-~~g~TpLh~A~~~g~~~iv~~LL~~-ga~~~~~d~~g~TpL~~A 271 (296)
.|.|+||+|+..|+. +++++|++.|+++|.+| ..|+||||+|+..++.+++++|+.+ |++++.+|..|+||||+|
T Consensus 54 ~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gadin~~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n~~~~~g~tpL~~A 133 (154)
T PHA02736 54 HGKQCVHIVSNPDKADPQEKLKLLMEWGADINGKERVFGNTPLHIAVYTQNYELATWLCNQPGVNMEILNYAFKTPYYVA 133 (154)
T ss_pred CCCEEEEeecccCchhHHHHHHHHHHcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCccccCCCCCHHHHH
Confidence 355699999999987 46889999999999998 4899999999999999999999985 999999999999999999
Q ss_pred hhcCcHHHHHHHHHcCCCCCC
Q 022481 272 PVTLQYKMRQKMEEDKNNVGS 292 (296)
Q Consensus 272 ~~~g~~~iv~~Ll~~gadi~~ 292 (296)
+..|+.+++++|+++|++.++
T Consensus 134 ~~~~~~~i~~~Ll~~ga~~~~ 154 (154)
T PHA02736 134 CERHDAKMMNILRAKGAQCKV 154 (154)
T ss_pred HHcCCHHHHHHHHHcCCCCCC
Confidence 999999999999999999864
No 27
>PHA02716 CPXV016; CPX019; EVM010; Provisional
Probab=99.78 E-value=4.7e-19 Score=172.60 Aligned_cols=120 Identities=17% Similarity=0.227 Sum_probs=106.9
Q ss_pred CCCcCcccccCCCCCCCCCCCCCccccccChHHHHHHHHcCC--HHHHHHHHHcCCCCcccCCCCCcHHHHH--------
Q 022481 169 TSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGD--AAAVKKLLSEGVDANFCDKQGMSLLHLA-------- 238 (296)
Q Consensus 169 ~~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~--~~~v~~Ll~~gadvn~~d~~g~TpLh~A-------- 238 (296)
+...++++|++.|++++..+..+.+ |||+|+..|+ .++|++||++|+++|.+|..|+||||+|
T Consensus 190 ~~~eIVklLLe~GADVN~kD~~G~T-------PLH~Aa~~g~~~~eIVklLLe~GADVN~kD~~G~TPLh~Ai~~a~n~~ 262 (764)
T PHA02716 190 VDIDILEWLCNNGVNVNLQNNHLIT-------PLHTYLITGNVCASVIKKIIELGGDMDMKCVNGMSPIMTYIINIDNIN 262 (764)
T ss_pred CCHHHHHHHHHcCCCCCCCCCCCCC-------HHHHHHHcCCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhhhccC
Confidence 3457899999999999998877776 9999999995 4899999999999999999999999975
Q ss_pred -----------------------------HHcCCHHHHHHHHHCCCCCCccCCCCCCHhhHhhh--cCcHHHHHHHHHcC
Q 022481 239 -----------------------------ALFNRTDIAFILMESGANMDCKNAQGESPLDCAPV--TLQYKMRQKMEEDK 287 (296)
Q Consensus 239 -----------------------------~~~g~~~iv~~LL~~ga~~~~~d~~g~TpL~~A~~--~g~~~iv~~Ll~~g 287 (296)
+..|+.+++++||++|++++.+|..|+||||+|+. .++.+++++|+++|
T Consensus 263 ~EIvkiLie~~d~n~~~~~~~~L~~~i~AA~~g~leiVklLLe~GAdIN~kD~~G~TPLH~Aaa~~~~~~eIVklLLe~G 342 (764)
T PHA02716 263 PEITNIYIESLDGNKVKNIPMILHSYITLARNIDISVVYSFLQPGVKLHYKDSAGRTCLHQYILRHNISTDIIKLLHEYG 342 (764)
T ss_pred HHHHHHHHHhccccccccchhhhHHHHHHHHcCCHHHHHHHHhCCCceeccCCCCCCHHHHHHHHhCCCchHHHHHHHcC
Confidence 34578899999999999999999999999999764 46789999999999
Q ss_pred CCCCCCCC
Q 022481 288 NNVGSTTS 295 (296)
Q Consensus 288 adi~~~n~ 295 (296)
++++.+|+
T Consensus 343 ADIN~kD~ 350 (764)
T PHA02716 343 NDLNEPDN 350 (764)
T ss_pred CCCccCCC
Confidence 99998875
No 28
>PHA02874 ankyrin repeat protein; Provisional
Probab=99.78 E-value=7.5e-19 Score=164.74 Aligned_cols=129 Identities=21% Similarity=0.209 Sum_probs=115.9
Q ss_pred ccccCCCCCCCCcCcccccCCCCCCCCCCCCCccccccChHHHHHHHHcCCHHHHHHHHHcCC-----------------
Q 022481 160 ENTARSRGSTSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGV----------------- 222 (296)
Q Consensus 160 ~~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~ga----------------- 222 (296)
++...+...+...++++|+..|++++..+..+.+ |||+|+..|+.+++++|+++|+
T Consensus 37 tpL~~A~~~g~~~iv~~Ll~~Ga~~n~~~~~~~t-------~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~i~~ 109 (434)
T PHA02874 37 TPLIDAIRSGDAKIVELFIKHGADINHINTKIPH-------PLLTAIKIGAHDIIKLLIDNGVDTSILPIPCIEKDMIKT 109 (434)
T ss_pred CHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCC-------HHHHHHHcCCHHHHHHHHHCCCCCCcchhccCCHHHHHH
Confidence 4455566678889999999999999988776665 9999999999999999987764
Q ss_pred ------CCcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHhhHhhhcCcHHHHHHHHHcCCCCCCCCC
Q 022481 223 ------DANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKNNVGSTTS 295 (296)
Q Consensus 223 ------dvn~~d~~g~TpLh~A~~~g~~~iv~~LL~~ga~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gadi~~~n~ 295 (296)
+++.+|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++..|.
T Consensus 110 ll~~g~d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~g~~~n~~~~ 188 (434)
T PHA02874 110 ILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYANVKDN 188 (434)
T ss_pred HHHCcCCCCCCCCCCccHHHHHHHCCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCC
Confidence 5677889999999999999999999999999999999999999999999999999999999999999988763
No 29
>PHA03100 ankyrin repeat protein; Provisional
Probab=99.78 E-value=6.8e-19 Score=166.90 Aligned_cols=118 Identities=21% Similarity=0.257 Sum_probs=80.5
Q ss_pred CCcCcccccCCCCCCCCCCCCCccccccChHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCC------CcHHHHHHHcCC
Q 022481 170 SNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQG------MSLLHLAALFNR 243 (296)
Q Consensus 170 ~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~gadvn~~d~~g------~TpLh~A~~~g~ 243 (296)
...+++.|++.|++++..+..+.+ |||+|+..|+.+++++|+++|++++..+..| .||||+|+..++
T Consensus 155 ~~~iv~~Ll~~g~din~~d~~g~t-------pL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~t~l~~a~~~~~ 227 (480)
T PHA03100 155 DLKILKLLIDKGVDINAKNRYGYT-------PLHIAVEKGNIDVIKFLLDNGADINAGDIETLLFTIFETPLHIAACYNE 227 (480)
T ss_pred hHHHHHHHHHCCCCcccccCCCCC-------HHHHHHHhCCHHHHHHHHHcCCCccCCCCCCCcHHHHHhHHHHHHHhCc
Confidence 556677777777777776655444 6777777776666666666666666666666 666666666666
Q ss_pred --HHHHHHHHHCCCCCCccCCCCCCHhhHhhhcCcHHHHHHHHHcCCCCCCCC
Q 022481 244 --TDIAFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKNNVGSTT 294 (296)
Q Consensus 244 --~~iv~~LL~~ga~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gadi~~~n 294 (296)
.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|+|++.+|
T Consensus 228 ~~~~iv~~Ll~~g~din~~d~~g~TpL~~A~~~~~~~iv~~Ll~~gad~n~~d 280 (480)
T PHA03100 228 ITLEVVNYLLSYGVPINIKDVYGFTPLHYAVYNNNPEFVKYLLDLGANPNLVN 280 (480)
T ss_pred CcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccC
Confidence 666666666666666666666677777666666666776666666666654
No 30
>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]
Probab=99.78 E-value=9.5e-19 Score=137.83 Aligned_cols=93 Identities=28% Similarity=0.317 Sum_probs=65.0
Q ss_pred HHHHHHHcCCHHHHHHHHHcCCC-CcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHhhHhhhcCcHHH
Q 022481 201 GLRDAIKNGDAAAVKKLLSEGVD-ANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCAPVTLQYKM 279 (296)
Q Consensus 201 ~Lh~A~~~g~~~~v~~Ll~~gad-vn~~d~~g~TpLh~A~~~g~~~iv~~LL~~ga~~~~~d~~g~TpL~~A~~~g~~~i 279 (296)
-+.||+..+.+..|+.||+..++ +|.+|.+|+||||.|+.+|+.+||+.||..||+++++...||||||-|+..++.++
T Consensus 66 l~lwaae~nrl~eV~~lL~e~an~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn~~a~T~~GWTPLhSAckWnN~~v 145 (228)
T KOG0512|consen 66 LLLWAAEKNRLTEVQRLLSEKANHVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGANKEAKTNEGWTPLHSACKWNNFEV 145 (228)
T ss_pred HHHHHHhhccHHHHHHHHHhccccccccccccccHHHHHHhcCchHHHHHHHHccCCcccccccCccchhhhhcccchhH
Confidence 35667777777777777665443 66777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHcCCCCCCC
Q 022481 280 RQKMEEDKNNVGST 293 (296)
Q Consensus 280 v~~Ll~~gadi~~~ 293 (296)
+.+||++|||||+.
T Consensus 146 a~~LLqhgaDVnA~ 159 (228)
T KOG0512|consen 146 AGRLLQHGADVNAQ 159 (228)
T ss_pred HHHHHhccCccccc
Confidence 77777777777664
No 31
>PHA02741 hypothetical protein; Provisional
Probab=99.77 E-value=2.2e-18 Score=141.11 Aligned_cols=88 Identities=27% Similarity=0.285 Sum_probs=45.0
Q ss_pred HHHHHHHcCC----HHHHHHHHHcCCCCcccCC-CCCcHHHHHHHcCCHHHHHHHHH-CCCCCCccCCCCCCHhhHhhhc
Q 022481 201 GLRDAIKNGD----AAAVKKLLSEGVDANFCDK-QGMSLLHLAALFNRTDIAFILME-SGANMDCKNAQGESPLDCAPVT 274 (296)
Q Consensus 201 ~Lh~A~~~g~----~~~v~~Ll~~gadvn~~d~-~g~TpLh~A~~~g~~~iv~~LL~-~ga~~~~~d~~g~TpL~~A~~~ 274 (296)
|||+|+..|+ .+++++|++.|+++|.++. .|+||||+|+..++.+++++||+ .|++++..|.+|+||||+|...
T Consensus 63 ~Lh~A~~~g~~~~~~~ii~~Ll~~gadin~~~~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~tpL~~A~~~ 142 (169)
T PHA02741 63 CIHIAAEKHEAQLAAEIIDHLIELGADINAQEMLEGDTALHLAAHRRDHDLAEWLCCQPGIDLHFCNADNKSPFELAIDN 142 (169)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCCCCCCcCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCCHHHHHHHC
Confidence 5555555554 3445555555555555443 45555555555555555555554 2555555555555555555555
Q ss_pred CcHHHHHHHHHcCC
Q 022481 275 LQYKMRQKMEEDKN 288 (296)
Q Consensus 275 g~~~iv~~Ll~~ga 288 (296)
++.+++++|++.++
T Consensus 143 ~~~~iv~~L~~~~~ 156 (169)
T PHA02741 143 EDVAMMQILREIVA 156 (169)
T ss_pred CCHHHHHHHHHHHH
Confidence 55555555555433
No 32
>PHA02795 ankyrin-like protein; Provisional
Probab=99.77 E-value=8.2e-19 Score=160.89 Aligned_cols=129 Identities=19% Similarity=0.076 Sum_probs=107.2
Q ss_pred CCCCCCCCcCcccccCCCCCCCCCCCCCccccccChHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCC
Q 022481 164 RSRGSTSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNR 243 (296)
Q Consensus 164 ~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~ 243 (296)
.++..+...++++|+..|+..+...... .....+.+++|.|+..++.+++++|+++|+++|.+|..|.||||+|+..|+
T Consensus 155 ~A~~~~~~eIVk~Lls~Ga~~~n~~~~~-l~~~~~~t~l~~a~~~~~~eIve~LIs~GADIN~kD~~G~TpLh~Aa~~g~ 233 (437)
T PHA02795 155 RGICKKESSVVEFILNCGIPDENDVKLD-LYKIIQYTRGFLVDEPTVLEIYKLCIPYIEDINQLDAGGRTLLYRAIYAGY 233 (437)
T ss_pred HHHHcCcHHHHHHHHhcCCcccccccch-hhhhhccchhHHHHhcCHHHHHHHHHhCcCCcCcCCCCCCCHHHHHHHcCC
Confidence 3444567788889999887432221100 000124468999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHCCCCCCccCCCCCCHhhHhhhcC--------cHHHHHHHHHcCCCCCCC
Q 022481 244 TDIAFILMESGANMDCKNAQGESPLDCAPVTL--------QYKMRQKMEEDKNNVGST 293 (296)
Q Consensus 244 ~~iv~~LL~~ga~~~~~d~~g~TpL~~A~~~g--------~~~iv~~Ll~~gadi~~~ 293 (296)
.+++++|+++||+++.+|..|+||||+|+..| +.+++++|+++|++++..
T Consensus 234 ~eiVelLL~~GAdIN~~d~~G~TpLh~Aa~~g~~~~~~~~~~eIvelLL~~gadI~~~ 291 (437)
T PHA02795 234 IDLVSWLLENGANVNAVMSNGYTCLDVAVDRGSVIARRETHLKILEILLREPLSIDCI 291 (437)
T ss_pred HHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCcccccccHHHHHHHHHhCCCCCCch
Confidence 99999999999999999999999999999988 469999999999998764
No 33
>PHA03100 ankyrin repeat protein; Provisional
Probab=99.77 E-value=8.3e-19 Score=166.32 Aligned_cols=123 Identities=21% Similarity=0.270 Sum_probs=112.6
Q ss_pred CCCCCCCcCcccccCCCCCCCCCCCCCccccccChHHHHHHH--HcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcC
Q 022481 165 SRGSTSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAI--KNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFN 242 (296)
Q Consensus 165 ~~~~~~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~--~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g 242 (296)
+...+...+++.|++.|++++..+..+.+ |||+|+ ..|+.+++++|+++|++++..+..|.||||+|+..+
T Consensus 80 a~~~~~~~iv~~Ll~~ga~i~~~d~~g~t-------pL~~A~~~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~ 152 (480)
T PHA03100 80 YNLTDVKEIVKLLLEYGANVNAPDNNGIT-------PLLYAISKKSNSYSIVEYLLDNGANVNIKNSDGENLLHLYLESN 152 (480)
T ss_pred HHhhchHHHHHHHHHCCCCCCCCCCCCCc-------hhhHHHhcccChHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcC
Confidence 44556677889999999999887776666 999999 999999999999999999999999999999999999
Q ss_pred --CHHHHHHHHHCCCCCCccCCCCCCHhhHhhhcCcHHHHHHHHHcCCCCCCCC
Q 022481 243 --RTDIAFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKNNVGSTT 294 (296)
Q Consensus 243 --~~~iv~~LL~~ga~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gadi~~~n 294 (296)
+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++..+
T Consensus 153 ~~~~~iv~~Ll~~g~din~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~~ 206 (480)
T PHA03100 153 KIDLKILKLLIDKGVDINAKNRYGYTPLHIAVEKGNIDVIKFLLDNGADINAGD 206 (480)
T ss_pred CChHHHHHHHHHCCCCcccccCCCCCHHHHHHHhCCHHHHHHHHHcCCCccCCC
Confidence 9999999999999999999999999999999999999999999999998765
No 34
>PHA02741 hypothetical protein; Provisional
Probab=99.77 E-value=1.1e-18 Score=142.85 Aligned_cols=104 Identities=15% Similarity=0.203 Sum_probs=94.5
Q ss_pred CCCCCCCccccccChHHHHHHHHcCCHHHHHHH---H---HcCCCCcccCCCCCcHHHHHHHcCC----HHHHHHHHHCC
Q 022481 185 NGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKL---L---SEGVDANFCDKQGMSLLHLAALFNR----TDIAFILMESG 254 (296)
Q Consensus 185 ~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~L---l---~~gadvn~~d~~g~TpLh~A~~~g~----~~iv~~LL~~g 254 (296)
+..+..+.+ +||+|+..|+.+++++| + ..|++++.+|..|+||||+|+..|+ .+++++|+++|
T Consensus 15 ~~~~~~g~t-------~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~g 87 (169)
T PHA02741 15 AEKNSEGEN-------FFHEAARCGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELG 87 (169)
T ss_pred hccccCCCC-------HHHHHHHcCCHHHHHHHHHHhccchhhhhhhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 445667777 99999999999999986 6 5689999999999999999999999 58999999999
Q ss_pred CCCCccCC-CCCCHhhHhhhcCcHHHHHHHHH-cCCCCCCCCC
Q 022481 255 ANMDCKNA-QGESPLDCAPVTLQYKMRQKMEE-DKNNVGSTTS 295 (296)
Q Consensus 255 a~~~~~d~-~g~TpL~~A~~~g~~~iv~~Ll~-~gadi~~~n~ 295 (296)
+++|.++. .|+||||+|+..++.+++++|+. .|++++.+|.
T Consensus 88 adin~~~~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~n~ 130 (169)
T PHA02741 88 ADINAQEMLEGDTALHLAAHRRDHDLAEWLCCQPGIDLHFCNA 130 (169)
T ss_pred CCCCCCCcCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCC
Confidence 99999985 89999999999999999999998 5999998764
No 35
>PHA02743 Viral ankyrin protein; Provisional
Probab=99.76 E-value=2.7e-18 Score=140.14 Aligned_cols=96 Identities=18% Similarity=0.311 Sum_probs=87.1
Q ss_pred HHHHHHHHcCCH----HHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHH---HHHHHHCCCCCCccC-CCCCCHhhHh
Q 022481 200 EGLRDAIKNGDA----AAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDI---AFILMESGANMDCKN-AQGESPLDCA 271 (296)
Q Consensus 200 t~Lh~A~~~g~~----~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~i---v~~LL~~ga~~~~~d-~~g~TpL~~A 271 (296)
++||+|++.|++ +++++|++.|++++.+|..|+||||+|+..|+.++ +++|+++|+++|.+| ..|+||||+|
T Consensus 22 ~~l~~a~~~g~~~~l~~~~~~l~~~g~~~~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gadin~~d~~~g~TpLh~A 101 (166)
T PHA02743 22 NTFLRICRTGNIYELMEVAPFISGDGHLLHRYDHHGRQCTHMVAWYDRANAVMKIELLVNMGADINARELGTGNTLLHIA 101 (166)
T ss_pred cHHHHHHHcCCHHHHHHHHHHHhhcchhhhccCCCCCcHHHHHHHhCccCHHHHHHHHHHcCCCCCCCCCCCCCcHHHHH
Confidence 389999999998 56667888999999999999999999999988654 899999999999998 5899999999
Q ss_pred hhcCcHHHHHHHHH-cCCCCCCCCC
Q 022481 272 PVTLQYKMRQKMEE-DKNNVGSTTS 295 (296)
Q Consensus 272 ~~~g~~~iv~~Ll~-~gadi~~~n~ 295 (296)
+..++.+++++|++ .|++++.+|+
T Consensus 102 ~~~g~~~iv~~Ll~~~gad~~~~d~ 126 (166)
T PHA02743 102 ASTKNYELAEWLCRQLGVNLGAINY 126 (166)
T ss_pred HHhCCHHHHHHHHhccCCCccCcCC
Confidence 99999999999995 8999998874
No 36
>PHA02716 CPXV016; CPX019; EVM010; Provisional
Probab=99.76 E-value=2.3e-18 Score=167.78 Aligned_cols=121 Identities=17% Similarity=0.157 Sum_probs=106.7
Q ss_pred CCCCcCcccccCCC-CCCCCC-CCCCccccccChHHHHHHHHc--CCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCC
Q 022481 168 STSNSNFSSIFNPG-QVTNGA-TDKPRMEYEVNGEGLRDAIKN--GDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNR 243 (296)
Q Consensus 168 ~~~~~~~~~ll~~g-~~~~~~-~~~~~~~~~~~~t~Lh~A~~~--g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~ 243 (296)
.....++++|++.| +++|.. +..+.+ |||+|+.. ++.+++++|+++|+++|.+|..|+||||+|+..|+
T Consensus 152 ~v~leiVk~LLe~G~ADIN~~~d~~G~T-------pLH~A~~n~~~~~eIVklLLe~GADVN~kD~~G~TPLH~Aa~~g~ 224 (764)
T PHA02716 152 GIDLDLIKYMVDVGIVNLNYVCKKTGYG-------ILHAYLGNMYVDIDILEWLCNNGVNVNLQNNHLITPLHTYLITGN 224 (764)
T ss_pred CCCHHHHHHHHHCCCCCcccccCCCCCc-------HHHHHHHhccCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCC
Confidence 35667899999999 999887 666665 99998654 68899999999999999999999999999999995
Q ss_pred --HHHHHHHHHCCCCCCccCCCCCCHhhHh-------------------------------------hhcCcHHHHHHHH
Q 022481 244 --TDIAFILMESGANMDCKNAQGESPLDCA-------------------------------------PVTLQYKMRQKME 284 (296)
Q Consensus 244 --~~iv~~LL~~ga~~~~~d~~g~TpL~~A-------------------------------------~~~g~~~iv~~Ll 284 (296)
.+++++||++||++|.+|..|+||||+| +..|+.+++++|+
T Consensus 225 ~~~eIVklLLe~GADVN~kD~~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i~AA~~g~leiVklLL 304 (764)
T PHA02716 225 VCASVIKKIIELGGDMDMKCVNGMSPIMTYIINIDNINPEITNIYIESLDGNKVKNIPMILHSYITLARNIDISVVYSFL 304 (764)
T ss_pred CCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhhhccCHHHHHHHHHhccccccccchhhhHHHHHHHHcCCHHHHHHHH
Confidence 4899999999999999999999999975 3457789999999
Q ss_pred HcCCCCCCCCC
Q 022481 285 EDKNNVGSTTS 295 (296)
Q Consensus 285 ~~gadi~~~n~ 295 (296)
++|++++.+|.
T Consensus 305 e~GAdIN~kD~ 315 (764)
T PHA02716 305 QPGVKLHYKDS 315 (764)
T ss_pred hCCCceeccCC
Confidence 99999998764
No 37
>PHA02884 ankyrin repeat protein; Provisional
Probab=99.75 E-value=2.3e-18 Score=152.02 Aligned_cols=96 Identities=18% Similarity=0.113 Sum_probs=90.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHcCCCCcccC----CCCCcHHHHHHHcCCHHHHHHHHHCCCCCCccC-CCCCCHhhHhhhc
Q 022481 200 EGLRDAIKNGDAAAVKKLLSEGVDANFCD----KQGMSLLHLAALFNRTDIAFILMESGANMDCKN-AQGESPLDCAPVT 274 (296)
Q Consensus 200 t~Lh~A~~~g~~~~v~~Ll~~gadvn~~d----~~g~TpLh~A~~~g~~~iv~~LL~~ga~~~~~d-~~g~TpL~~A~~~ 274 (296)
++||+|+..|+.+++++|+++|+++|.++ ..|.||||+|+..++.+++++|+++||++|.++ ..|.||||+|+..
T Consensus 35 ~lL~~A~~~~~~eivk~LL~~GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADVN~~~~~~g~TpLh~Aa~~ 114 (300)
T PHA02884 35 NILYSSIKFHYTDIIDAILKLGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRYAEEAKITPLYISVLH 114 (300)
T ss_pred HHHHHHHHcCCHHHHHHHHHCCCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcCcccCCCCCCHHHHHHHc
Confidence 48999999999999999999999999974 589999999999999999999999999999964 5799999999999
Q ss_pred CcHHHHHHHHHcCCCCCCCCC
Q 022481 275 LQYKMRQKMEEDKNNVGSTTS 295 (296)
Q Consensus 275 g~~~iv~~Ll~~gadi~~~n~ 295 (296)
++.+++++|+++|++++.+|.
T Consensus 115 ~~~eivklLL~~GAdin~kd~ 135 (300)
T PHA02884 115 GCLKCLEILLSYGADINIQTN 135 (300)
T ss_pred CCHHHHHHHHHCCCCCCCCCC
Confidence 999999999999999998864
No 38
>PHA03095 ankyrin-like protein; Provisional
Probab=99.75 E-value=2.5e-18 Score=162.66 Aligned_cols=116 Identities=17% Similarity=0.217 Sum_probs=100.4
Q ss_pred CCCcCcccccCCCCCCCCCCCCCccccccChHHHHHHHHcCCH--HHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHH
Q 022481 169 TSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDA--AAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDI 246 (296)
Q Consensus 169 ~~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~--~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~i 246 (296)
+...+++.|+..|++++..+..+.+ |||+|+..|+. .+++.|++.|+++|.+|..|+||||+|+..|+.++
T Consensus 200 ~~~~i~~~Ll~~g~~~~~~d~~g~t-------pLh~Aa~~~~~~~~~v~~ll~~g~din~~d~~g~TpLh~A~~~~~~~~ 272 (471)
T PHA03095 200 PRARIVRELIRAGCDPAATDMLGNT-------PLHSMATGSSCKRSLVLPLLIAGISINARNRYGQTPLHYAAVFNNPRA 272 (471)
T ss_pred CcHHHHHHHHHcCCCCcccCCCCCC-------HHHHHHhcCCchHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHH
Confidence 3456677888888888888777666 99999988865 57888888999999999999999999999999999
Q ss_pred HHHHHHCCCCCCccCCCCCCHhhHhhhcCcHHHHHHHHHcCCCCC
Q 022481 247 AFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKNNVG 291 (296)
Q Consensus 247 v~~LL~~ga~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gadi~ 291 (296)
+++||++||+++.+|.+|+||||+|+..|+.+++++|++++++++
T Consensus 273 v~~LL~~gad~n~~~~~g~tpl~~A~~~~~~~~v~~LL~~~~~~~ 317 (471)
T PHA03095 273 CRRLIALGADINAVSSDGNTPLSLMVRNNNGRAVRAALAKNPSAE 317 (471)
T ss_pred HHHHHHcCCCCcccCCCCCCHHHHHHHhCCHHHHHHHHHhCCCHH
Confidence 999999999999999999999999999999999999999888774
No 39
>PHA02795 ankyrin-like protein; Provisional
Probab=99.75 E-value=5.2e-18 Score=155.65 Aligned_cols=119 Identities=13% Similarity=0.015 Sum_probs=106.2
Q ss_pred CCCCcCcccccCCCCCCCCCCCCCccccccChHHHHHHHHcCCHHHHHHHHHcCCCCcccC------CCCCcHHHHHHHc
Q 022481 168 STSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCD------KQGMSLLHLAALF 241 (296)
Q Consensus 168 ~~~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~gadvn~~d------~~g~TpLh~A~~~ 241 (296)
.+..+++++|+..|++++..+. . |+||+|+..++.+++++|+.+|++.+... ..+.|++|.|+..
T Consensus 128 ~n~~eiV~~LI~~GADIn~~~~--~-------t~lh~A~~~~~~eIVk~Lls~Ga~~~n~~~~~l~~~~~~t~l~~a~~~ 198 (437)
T PHA02795 128 YVEIDIVDFMVDHGAVIYKIEC--L-------NAYFRGICKKESSVVEFILNCGIPDENDVKLDLYKIIQYTRGFLVDEP 198 (437)
T ss_pred CCCHHHHHHHHHCCCCCCCCCC--C-------CHHHHHHHcCcHHHHHHHHhcCCcccccccchhhhhhccchhHHHHhc
Confidence 4677889999999999987432 3 49999999999999999999998543222 3488999999999
Q ss_pred CCHHHHHHHHHCCCCCCccCCCCCCHhhHhhhcCcHHHHHHHHHcCCCCCCCCC
Q 022481 242 NRTDIAFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKNNVGSTTS 295 (296)
Q Consensus 242 g~~~iv~~LL~~ga~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gadi~~~n~ 295 (296)
++.+++++|+++||++|.+|..|.||||+|+..|+.+++++|+++||+++++|+
T Consensus 199 ~~~eIve~LIs~GADIN~kD~~G~TpLh~Aa~~g~~eiVelLL~~GAdIN~~d~ 252 (437)
T PHA02795 199 TVLEIYKLCIPYIEDINQLDAGGRTLLYRAIYAGYIDLVSWLLENGANVNAVMS 252 (437)
T ss_pred CHHHHHHHHHhCcCCcCcCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCC
Confidence 999999999999999999999999999999999999999999999999999875
No 40
>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]
Probab=99.74 E-value=4.8e-18 Score=133.89 Aligned_cols=120 Identities=18% Similarity=0.220 Sum_probs=100.3
Q ss_pred CCCcCcccccCC-CCCCCCCCCCCccccccChHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHH
Q 022481 169 TSNSNFSSIFNP-GQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIA 247 (296)
Q Consensus 169 ~~~~~~~~ll~~-g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~iv 247 (296)
.....|+.||.. ...+|.+|..+.+ |||.|+++|+.++|+.|+..|++++.+...||||||-|+.-++.+++
T Consensus 74 nrl~eV~~lL~e~an~vNtrD~D~YT-------pLHRAaYn~h~div~~ll~~gAn~~a~T~~GWTPLhSAckWnN~~va 146 (228)
T KOG0512|consen 74 NRLTEVQRLLSEKANHVNTRDEDEYT-------PLHRAAYNGHLDIVHELLLSGANKEAKTNEGWTPLHSACKWNNFEVA 146 (228)
T ss_pred ccHHHHHHHHHhcccccccccccccc-------HHHHHHhcCchHHHHHHHHccCCcccccccCccchhhhhcccchhHH
Confidence 344456666654 4557777777666 99999999999999999999999999999999999999999999999
Q ss_pred HHHHHCCCCCCccCCCCCCHhhHhhhcCc-HHHHHHHHH-cCCCCCCCCC
Q 022481 248 FILMESGANMDCKNAQGESPLDCAPVTLQ-YKMRQKMEE-DKNNVGSTTS 295 (296)
Q Consensus 248 ~~LL~~ga~~~~~d~~g~TpL~~A~~~g~-~~iv~~Ll~-~gadi~~~n~ 295 (296)
.+||++|||||+.....+||||+|+...+ ...+++||. .+++...+++
T Consensus 147 ~~LLqhgaDVnA~t~g~ltpLhlaa~~rn~r~t~~~Ll~dryi~pg~~nn 196 (228)
T KOG0512|consen 147 GRLLQHGADVNAQTKGLLTPLHLAAGNRNSRDTLELLLHDRYIHPGLKNN 196 (228)
T ss_pred HHHHhccCcccccccccchhhHHhhcccchHHHHHHHhhccccChhhhcC
Confidence 99999999999999999999999998665 445666654 4666665554
No 41
>PHA02989 ankyrin repeat protein; Provisional
Probab=99.74 E-value=7.4e-18 Score=160.50 Aligned_cols=119 Identities=18% Similarity=0.214 Sum_probs=105.8
Q ss_pred CCcCcccccCCCCCCCCCCCCCccccccChHHHHHHHHc---CCHHHHHHHHHcCCCC-cccCCCCCcHHHHHHHc--CC
Q 022481 170 SNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKN---GDAAAVKKLLSEGVDA-NFCDKQGMSLLHLAALF--NR 243 (296)
Q Consensus 170 ~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~---g~~~~v~~Ll~~gadv-n~~d~~g~TpLh~A~~~--g~ 243 (296)
...++++|++.|+++|..+..|.+ |||.|+.. |+.+++++|+++|+|+ +.+|..|+||||+|+.. ++
T Consensus 87 ~~~iv~~Ll~~Gadin~~d~~g~t-------pL~~a~~~~~~~~~eiv~~Ll~~Gadin~~~d~~g~tpLh~a~~~~~~~ 159 (494)
T PHA02989 87 IKKIVKLLLKFGADINLKTFNGVS-------PIVCFIYNSNINNCDMLRFLLSKGINVNDVKNSRGYNLLHMYLESFSVK 159 (494)
T ss_pred HHHHHHHHHHCCCCCCCCCCCCCc-------HHHHHHHhcccCcHHHHHHHHHCCCCcccccCCCCCCHHHHHHHhccCC
Confidence 346789999999999998877766 99988765 6899999999999999 89999999999998764 68
Q ss_pred HHHHHHHHHCCCCCCc-cCCCCCCHhhHhhhc----CcHHHHHHHHHcCCCCCCCCC
Q 022481 244 TDIAFILMESGANMDC-KNAQGESPLDCAPVT----LQYKMRQKMEEDKNNVGSTTS 295 (296)
Q Consensus 244 ~~iv~~LL~~ga~~~~-~d~~g~TpL~~A~~~----g~~~iv~~Ll~~gadi~~~n~ 295 (296)
.+++++||++|++++. .+..|.||||+|+.. ++.+++++|+++|++++..|.
T Consensus 160 ~~iv~~Ll~~Gadi~~~~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~vn~~~~ 216 (494)
T PHA02989 160 KDVIKILLSFGVNLFEKTSLYGLTPMNIYLRNDIDVISIKVIKYLIKKGVNIETNNN 216 (494)
T ss_pred HHHHHHHHHcCCCccccccccCCChHHHHHhcccccccHHHHHHHHhCCCCccccCC
Confidence 9999999999999998 688999999998765 489999999999999998763
No 42
>PHA02876 ankyrin repeat protein; Provisional
Probab=99.74 E-value=7.7e-18 Score=166.35 Aligned_cols=119 Identities=17% Similarity=0.183 Sum_probs=104.4
Q ss_pred CCcCcccccCCCCCCCCCCCCCccccccChHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCC-HHHHH
Q 022481 170 SNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNR-TDIAF 248 (296)
Q Consensus 170 ~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~-~~iv~ 248 (296)
...++.+|+..|++++..+..+.+ |||+|+..|+.+++++|+++|++++..+..|.||||+|+..++ ..+++
T Consensus 354 ~~~iv~lLl~~gadin~~d~~G~T-------pLh~Aa~~~~~~iv~~Ll~~gad~~~~~~~g~T~Lh~A~~~~~~~~~vk 426 (682)
T PHA02876 354 NKDIVITLLELGANVNARDYCDKT-------PIHYAAVRNNVVIINTLLDYGADIEALSQKIGTALHFALCGTNPYMSVK 426 (682)
T ss_pred cHHHHHHHHHcCCCCccCCCCCCC-------HHHHHHHcCCHHHHHHHHHCCCCccccCCCCCchHHHHHHcCCHHHHHH
Confidence 345566777888888887766665 9999999999999999999999999999999999999987665 56789
Q ss_pred HHHHCCCCCCccCCCCCCHhhHhhhcC-cHHHHHHHHHcCCCCCCCCC
Q 022481 249 ILMESGANMDCKNAQGESPLDCAPVTL-QYKMRQKMEEDKNNVGSTTS 295 (296)
Q Consensus 249 ~LL~~ga~~~~~d~~g~TpL~~A~~~g-~~~iv~~Ll~~gadi~~~n~ 295 (296)
+|+++|+++|.+|..|+||||+|+..| +.+++++|+++|+++|.+|.
T Consensus 427 ~Ll~~gadin~~d~~G~TpLh~Aa~~~~~~~iv~lLl~~Gad~n~~d~ 474 (682)
T PHA02876 427 TLIDRGANVNSKNKDLSTPLHYACKKNCKLDVIEMLLDNGADVNAINI 474 (682)
T ss_pred HHHhCCCCCCcCCCCCChHHHHHHHhCCcHHHHHHHHHCCCCCCCCCC
Confidence 999999999999999999999999876 68999999999999998874
No 43
>PHA02989 ankyrin repeat protein; Provisional
Probab=99.74 E-value=8.5e-18 Score=160.11 Aligned_cols=120 Identities=14% Similarity=0.160 Sum_probs=99.5
Q ss_pred CCCcCcccccCCCCCC-CCCCCCCccccccChHHHHHHHHc--CCHHHHHHHHHcCCCCcc-cCCCCCcHHHHHHHcC--
Q 022481 169 TSNSNFSSIFNPGQVT-NGATDKPRMEYEVNGEGLRDAIKN--GDAAAVKKLLSEGVDANF-CDKQGMSLLHLAALFN-- 242 (296)
Q Consensus 169 ~~~~~~~~ll~~g~~~-~~~~~~~~~~~~~~~t~Lh~A~~~--g~~~~v~~Ll~~gadvn~-~d~~g~TpLh~A~~~g-- 242 (296)
+..+++++|++.|+++ +..+..|.+ |||+|+.. ++.++|++|+++|++++. .+..|.||||+|+..+
T Consensus 122 ~~~eiv~~Ll~~Gadin~~~d~~g~t-------pLh~a~~~~~~~~~iv~~Ll~~Gadi~~~~~~~g~tpL~~a~~~~~~ 194 (494)
T PHA02989 122 NNCDMLRFLLSKGINVNDVKNSRGYN-------LLHMYLESFSVKKDVIKILLSFGVNLFEKTSLYGLTPMNIYLRNDID 194 (494)
T ss_pred CcHHHHHHHHHCCCCcccccCCCCCC-------HHHHHHHhccCCHHHHHHHHHcCCCccccccccCCChHHHHHhcccc
Confidence 4567889999999999 677766665 99998764 688999999999999988 5788999999887654
Q ss_pred --CHHHHHHHHHCCCCCCc--------------------------------------cCCCCCCHhhHhhhcCcHHHHHH
Q 022481 243 --RTDIAFILMESGANMDC--------------------------------------KNAQGESPLDCAPVTLQYKMRQK 282 (296)
Q Consensus 243 --~~~iv~~LL~~ga~~~~--------------------------------------~d~~g~TpL~~A~~~g~~~iv~~ 282 (296)
+.+++++|+++|++++. +|..|+||||+|+..|+.+++++
T Consensus 195 ~~~~~iv~~Ll~~Ga~vn~~~~~~~t~l~~~~~~~~~~~~~~~~il~~l~~~advn~~d~~G~TpL~~Aa~~~~~~~v~~ 274 (494)
T PHA02989 195 VISIKVIKYLIKKGVNIETNNNGSESVLESFLDNNKILSKKEFKVLNFILKYIKINKKDKKGFNPLLISAKVDNYEAFNY 274 (494)
T ss_pred cccHHHHHHHHhCCCCccccCCccccHHHHHHHhchhhcccchHHHHHHHhCCCCCCCCCCCCCHHHHHHHhcCHHHHHH
Confidence 88889998888877654 44568999999999999999999
Q ss_pred HHHcCCCCCCCCC
Q 022481 283 MEEDKNNVGSTTS 295 (296)
Q Consensus 283 Ll~~gadi~~~n~ 295 (296)
|+++|||++.+|.
T Consensus 275 LL~~Gadin~~d~ 287 (494)
T PHA02989 275 LLKLGDDIYNVSK 287 (494)
T ss_pred HHHcCCCccccCC
Confidence 9999999998874
No 44
>KOG0508 consensus Ankyrin repeat protein [General function prediction only]
Probab=99.73 E-value=3.8e-18 Score=152.84 Aligned_cols=135 Identities=18% Similarity=0.128 Sum_probs=112.7
Q ss_pred ccccCCCCCCCCcCcccccC-CCCCCCCCCCCC-ccccccChHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHH
Q 022481 160 ENTARSRGSTSNSNFSSIFN-PGQVTNGATDKP-RMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHL 237 (296)
Q Consensus 160 ~~~~~~~~~~~~~~~~~ll~-~g~~~~~~~~~~-~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~ 237 (296)
.+..-++..|..+++++|+. .++++.....-. ....-.|-+||..|+..||+++|+.|+.+|++||.......|||--
T Consensus 44 tPL~iaaRnGH~~vVeyLle~~~a~~e~~GsV~FDge~IegappLWaAsaAGHl~vVk~L~~~ga~VN~tT~TNStPLra 123 (615)
T KOG0508|consen 44 TPLLIAARNGHADVVEYLLEHCRASPEQGGSVRFDGETIEGAPPLWAASAAGHLEVVKLLLRRGASVNDTTRTNSTPLRA 123 (615)
T ss_pred CceeeehhcCcHHHHHHHHHHhcCCccCCceEEeCCcccCCCchhhHHhccCcHHHHHHHHHhcCccccccccCCccHHH
Confidence 34455567778888898887 455543321110 0111245569999999999999999999999999998888999999
Q ss_pred HHHcCCHHHHHHHHHCCCCCCccCCCCCCHhhHhhhcCcHHHHHHHHHcCCCCCCCC
Q 022481 238 AALFNRTDIAFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKNNVGSTT 294 (296)
Q Consensus 238 A~~~g~~~iv~~LL~~ga~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gadi~~~n 294 (296)
|+.-|+++++++|+++|||++..|..|.|.||+|+..|+.+|+++|++.|||+|.++
T Consensus 124 ACfDG~leivKyLvE~gad~~IanrhGhTcLmIa~ykGh~~I~qyLle~gADvn~ks 180 (615)
T KOG0508|consen 124 ACFDGHLEIVKYLVEHGADPEIANRHGHTCLMIACYKGHVDIAQYLLEQGADVNAKS 180 (615)
T ss_pred HHhcchhHHHHHHHHcCCCCcccccCCCeeEEeeeccCchHHHHHHHHhCCCcchhc
Confidence 999999999999999999999999999999999999999999999999999999875
No 45
>PHA02730 ankyrin-like protein; Provisional
Probab=99.73 E-value=1e-17 Score=160.70 Aligned_cols=119 Identities=16% Similarity=0.167 Sum_probs=102.4
Q ss_pred CCCcCcccccCCCCCCCCCCCCCccccccChHHHHHHHHcCC----HHHHHHHHHcCC--CCcccCCCCCcHHHH---HH
Q 022481 169 TSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGD----AAAVKKLLSEGV--DANFCDKQGMSLLHL---AA 239 (296)
Q Consensus 169 ~~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~----~~~v~~Ll~~ga--dvn~~d~~g~TpLh~---A~ 239 (296)
....++++|++.|+++|.. .. |.||||+|+..++ .+++++||++|+ ++|.+|..|.||||. |.
T Consensus 357 v~ieIvelLIs~GAdIN~k-~~-------G~TpLH~Aa~~nnn~i~~eIvelLIs~Ga~~dIN~kd~~G~T~Lh~~i~a~ 428 (672)
T PHA02730 357 VSIPILRCMLDNGATMDKT-TD-------NNYPLHDYFVNNNNIVDVNVVRFIVENNGHMAINHVSNNGRLCMYGLILSR 428 (672)
T ss_pred CcHHHHHHHHHCCCCCCcC-CC-------CCcHHHHHHHHcCCcchHHHHHHHHHcCCCccccccccCCCchHhHHHHHH
Confidence 4567789999999999963 33 4459999998875 899999999997 699999999999994 33
Q ss_pred HcC---------CHHHHHHHHHCCCCCCccCCCCCCHhhHhhhcCcHHHHHHHHHcCCCCCCCCC
Q 022481 240 LFN---------RTDIAFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKNNVGSTTS 295 (296)
Q Consensus 240 ~~g---------~~~iv~~LL~~ga~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gadi~~~n~ 295 (296)
..+ ..+++++|+.+||++|.+|..|+||||+|+..++.+++++|+++||++|.+|+
T Consensus 429 ~~n~~~~~~e~~~~~ivk~LIs~GADINakD~~G~TPLh~Aa~~~~~eive~LI~~GAdIN~~d~ 493 (672)
T PHA02730 429 FNNCGYHCYETILIDVFDILSKYMDDIDMIDNENKTLLYYAVDVNNIQFARRLLEYGASVNTTSR 493 (672)
T ss_pred hccccccccchhHHHHHHHHHhcccchhccCCCCCCHHHHHHHhCCHHHHHHHHHCCCCCCCCCC
Confidence 232 23579999999999999999999999999999999999999999999999874
No 46
>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]
Probab=99.73 E-value=8.8e-18 Score=167.21 Aligned_cols=109 Identities=27% Similarity=0.302 Sum_probs=69.2
Q ss_pred cccccCCCCCCCCCCCCCccccccChHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHC
Q 022481 174 FSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMES 253 (296)
Q Consensus 174 ~~~ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~iv~~LL~~ 253 (296)
...++..|++++.++..+.+ |||.|+..|++.+|++||++|+|++.+|+.|+||||.|+..|+.+|+++|+++
T Consensus 523 ~~~l~~~ga~v~~~~~r~~T-------pLh~A~~~g~v~~VkfLLe~gAdv~ak~~~G~TPLH~Aa~~G~~~i~~LLlk~ 595 (1143)
T KOG4177|consen 523 AKILLEHGANVDLRTGRGYT-------PLHVAVHYGNVDLVKFLLEHGADVNAKDKLGYTPLHQAAQQGHNDIAELLLKH 595 (1143)
T ss_pred HHHHhhcCCceehhcccccc-------hHHHHHhcCCchHHHHhhhCCccccccCCCCCChhhHHHHcChHHHHHHHHHc
Confidence 34444555555554444443 66666666666666666666666666666666666666666666666666666
Q ss_pred CCCCCccCCCCCCHhhHhhhcCcHHHHHHHHHcCCC
Q 022481 254 GANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKNN 289 (296)
Q Consensus 254 ga~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad 289 (296)
||++|..|.+|.|||++|++.|+++++++|+..+++
T Consensus 596 GA~vna~d~~g~TpL~iA~~lg~~~~~k~l~~~~~~ 631 (1143)
T KOG4177|consen 596 GASVNAADLDGFTPLHIAVRLGYLSVVKLLKVVTAT 631 (1143)
T ss_pred CCCCCcccccCcchhHHHHHhcccchhhHHHhccCc
Confidence 666666666666666666666666666666666665
No 47
>KOG4214 consensus Myotrophin and similar proteins [Transcription]
Probab=99.72 E-value=1.5e-17 Score=117.76 Aligned_cols=91 Identities=25% Similarity=0.288 Sum_probs=85.9
Q ss_pred HHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHhhHhhhcCcHHHH
Q 022481 201 GLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCAPVTLQYKMR 280 (296)
Q Consensus 201 ~Lh~A~~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~iv~~LL~~ga~~~~~d~~g~TpL~~A~~~g~~~iv 280 (296)
-+.|++++|.++.|+..+..|.++|.. ..|++|||+|+.+|+++++++|+..||+++.+|++|-|||..|+..|+.++|
T Consensus 5 ~~~W~vkNG~~DeVk~~v~~g~nVn~~-~ggR~plhyAAD~GQl~ilefli~iGA~i~~kDKygITPLLsAvwEGH~~cV 83 (117)
T KOG4214|consen 5 SVAWNVKNGEIDEVKQSVNEGLNVNEI-YGGRTPLHYAADYGQLSILEFLISIGANIQDKDKYGITPLLSAVWEGHRDCV 83 (117)
T ss_pred hHhhhhccCcHHHHHHHHHccccHHHH-hCCcccchHhhhcchHHHHHHHHHhccccCCccccCCcHHHHHHHHhhHHHH
Confidence 689999999999999999999998854 4899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCCC
Q 022481 281 QKMEEDKNNVGS 292 (296)
Q Consensus 281 ~~Ll~~gadi~~ 292 (296)
++||++|||-.+
T Consensus 84 klLL~~GAdrt~ 95 (117)
T KOG4214|consen 84 KLLLQNGADRTI 95 (117)
T ss_pred HHHHHcCcccce
Confidence 999999998654
No 48
>KOG0510 consensus Ankyrin repeat protein [General function prediction only]
Probab=99.72 E-value=6.1e-18 Score=160.06 Aligned_cols=128 Identities=20% Similarity=0.213 Sum_probs=115.1
Q ss_pred cccCCCCCCCCcCcccccCCCCCCCCCCCCCccccccChHHHHHHHHcCCHHHHHHHHH-cC-CCCcccCCCCCcHHHHH
Q 022481 161 NTARSRGSTSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLS-EG-VDANFCDKQGMSLLHLA 238 (296)
Q Consensus 161 ~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~-~g-advn~~d~~g~TpLh~A 238 (296)
+..-++..|....+..|+..|++++..+.++.+ |||.||.+|++..|+.||+ .| ..+|..|..|+||||+|
T Consensus 276 pLH~a~r~G~~~svd~Ll~~Ga~I~~kn~d~~s-------pLH~AA~yg~~ntv~rLL~~~~~rllne~D~~g~tpLHla 348 (929)
T KOG0510|consen 276 PLHYAARQGGPESVDNLLGFGASINSKNKDEES-------PLHFAAIYGRINTVERLLQESDTRLLNESDLHGMTPLHLA 348 (929)
T ss_pred hHHHHHHcCChhHHHHHHHcCCcccccCCCCCC-------chHHHHHcccHHHHHHHHhCcCccccccccccCCCchhhh
Confidence 344455668888899999999999999987777 9999999999999999998 44 56788899999999999
Q ss_pred HHcCCHHHHHHHHHCCCCCC---ccCCCCCCHhhHhhhcCcHHHHHHHHHcCCCCCCCCC
Q 022481 239 ALFNRTDIAFILMESGANMD---CKNAQGESPLDCAPVTLQYKMRQKMEEDKNNVGSTTS 295 (296)
Q Consensus 239 ~~~g~~~iv~~LL~~ga~~~---~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gadi~~~n~ 295 (296)
+..||..++++||+.||+.+ ..|.+|.||||+|+..|+..+|++|+.+||+|+.+|.
T Consensus 349 a~~gH~~v~qlLl~~GA~~~~~~e~D~dg~TaLH~Aa~~g~~~av~~Li~~Ga~I~~~n~ 408 (929)
T KOG0510|consen 349 AKSGHDRVVQLLLNKGALFLNMSEADSDGNTALHLAAKYGNTSAVQKLISHGADIGVKNK 408 (929)
T ss_pred hhcCHHHHHHHHHhcChhhhcccccccCCchhhhHHHHhccHHHHHHHHHcCCceeeccc
Confidence 99999999999999999988 4599999999999999999999999999999977654
No 49
>PHA02798 ankyrin-like protein; Provisional
Probab=99.72 E-value=2.7e-17 Score=156.47 Aligned_cols=117 Identities=16% Similarity=0.267 Sum_probs=106.8
Q ss_pred CcCcccccCCCCCCCCCCCCCccccccChHHHHHHHHcC---CHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCC---H
Q 022481 171 NSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNG---DAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNR---T 244 (296)
Q Consensus 171 ~~~~~~ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g---~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~---~ 244 (296)
..++++|++.|+++|..+..|.+ |||+|+..+ +.+++++|+++|++++.+|..|.||||+|+..++ .
T Consensus 89 ~~iv~~Ll~~GadiN~~d~~G~T-------pLh~a~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~tpL~~a~~~~~~~~~ 161 (489)
T PHA02798 89 LDIVKILIENGADINKKNSDGET-------PLYCLLSNGYINNLEILLFMIENGADTTLLDKDGFTMLQVYLQSNHHIDI 161 (489)
T ss_pred HHHHHHHHHCCCCCCCCCCCcCc-------HHHHHHHcCCcChHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCcchH
Confidence 57789999999999999887776 999999975 7899999999999999999999999999999988 9
Q ss_pred HHHHHHHHCCCCCCccC-CCCCCHhhHhhhc----CcHHHHHHHHHcCCCCCCCC
Q 022481 245 DIAFILMESGANMDCKN-AQGESPLDCAPVT----LQYKMRQKMEEDKNNVGSTT 294 (296)
Q Consensus 245 ~iv~~LL~~ga~~~~~d-~~g~TpL~~A~~~----g~~~iv~~Ll~~gadi~~~n 294 (296)
+++++|+++|++++..+ ..|.||||.+... ++.+++++|+++|++++..+
T Consensus 162 ~vv~~Ll~~gadin~~~~~~~~t~Lh~~~~~~~~~~~~~ivk~Li~~Ga~i~~~~ 216 (489)
T PHA02798 162 EIIKLLLEKGVDINTHNNKEKYDTLHCYFKYNIDRIDADILKLFVDNGFIINKEN 216 (489)
T ss_pred HHHHHHHHhCCCcccccCcCCCcHHHHHHHhccccCCHHHHHHHHHCCCCcccCC
Confidence 99999999999999985 5799999988754 58999999999999998765
No 50
>PHA02917 ankyrin-like protein; Provisional
Probab=99.71 E-value=3.1e-17 Score=160.01 Aligned_cols=115 Identities=14% Similarity=0.121 Sum_probs=94.2
Q ss_pred CcccccCCCCCCCCCCCCCccccccChHHHHHHHHc---CCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcC-------
Q 022481 173 NFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKN---GDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFN------- 242 (296)
Q Consensus 173 ~~~~ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~---g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g------- 242 (296)
.++.|+..|...+..+..+.+ |||+|+.. |+.++|++||+.|++++..|..|+||||+|+..|
T Consensus 14 ~~~~l~~~~~~~~~~d~~g~t-------~Lh~a~~~~~~~~~~~v~~Ll~~ga~v~~~~~~g~TpL~~Aa~~g~~~v~~~ 86 (661)
T PHA02917 14 ELKQMLRDRDPNDTRNQFKNN-------ALHAYLFNEHCNNVEVVKLLLDSGTNPLHKNWRQLTPLEEYTNSRHVKVNKD 86 (661)
T ss_pred HHHHHHhccCcccccCCCCCc-------HHHHHHHhhhcCcHHHHHHHHHCCCCccccCCCCCCHHHHHHHcCChhHHHH
Confidence 356677777777766766665 89987555 7789999999889998888888889988777543
Q ss_pred ----------------------------CHHHHHHHHHCCCCCCccCCCCCCHhhHh--hhcCcHHHHHHHHHcCCCCCC
Q 022481 243 ----------------------------RTDIAFILMESGANMDCKNAQGESPLDCA--PVTLQYKMRQKMEEDKNNVGS 292 (296)
Q Consensus 243 ----------------------------~~~iv~~LL~~ga~~~~~d~~g~TpL~~A--~~~g~~~iv~~Ll~~gadi~~ 292 (296)
+.+++++||++|+|+|.+|.+|+||||+| +..|+.+++++|+++||+++.
T Consensus 87 ~~~~Ll~~~~~~n~~~~~~~~~~a~~~~~~e~vk~Ll~~Gadin~~d~~g~T~L~~~~a~~~~~~eivklLi~~Ga~vn~ 166 (661)
T PHA02917 87 IAMALLEATGYSNINDFNIFSYMKSKNVDVDLIKVLVEHGFDLSVKCENHRSVIENYVMTDDPVPEIIDLFIENGCSVLY 166 (661)
T ss_pred HHHHHHhccCCCCCCCcchHHHHHhhcCCHHHHHHHHHcCCCCCccCCCCccHHHHHHHccCCCHHHHHHHHHcCCCccc
Confidence 45778899999999999999999999964 357899999999999999986
Q ss_pred CC
Q 022481 293 TT 294 (296)
Q Consensus 293 ~n 294 (296)
.|
T Consensus 167 ~d 168 (661)
T PHA02917 167 ED 168 (661)
T ss_pred cc
Confidence 54
No 51
>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]
Probab=99.71 E-value=1.2e-17 Score=166.13 Aligned_cols=129 Identities=19% Similarity=0.251 Sum_probs=118.9
Q ss_pred CccccCCCCCCCCcCcccccCCCCCCCCCCCCCccccccChHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHH
Q 022481 159 TENTARSRGSTSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLA 238 (296)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A 238 (296)
.+....++..+....+..|++.++..+.....+.+ +||.|...+...+++.++++|++++.++..|+||||.|
T Consensus 475 ~T~Lhlaaq~Gh~~~~~llle~~~~~~~~~~~~l~-------~lhla~~~~~v~~~~~l~~~ga~v~~~~~r~~TpLh~A 547 (1143)
T KOG4177|consen 475 FTPLHLAAQEGHTEVVQLLLEGGANDNLDAKKGLT-------PLHLAADEDTVKVAKILLEHGANVDLRTGRGYTPLHVA 547 (1143)
T ss_pred CcchhhhhccCCchHHHHhhhcCCccCccchhccc-------hhhhhhhhhhHHHHHHHhhcCCceehhcccccchHHHH
Confidence 44455667778888889999999777777766666 99999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHCCCCCCccCCCCCCHhhHhhhcCcHHHHHHHHHcCCCCCCCC
Q 022481 239 ALFNRTDIAFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKNNVGSTT 294 (296)
Q Consensus 239 ~~~g~~~iv~~LL~~ga~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gadi~~~n 294 (296)
+.+|+.++|++||++|||++.+++.|+||||.|+..|+.+++++|+++||++|+.|
T Consensus 548 ~~~g~v~~VkfLLe~gAdv~ak~~~G~TPLH~Aa~~G~~~i~~LLlk~GA~vna~d 603 (1143)
T KOG4177|consen 548 VHYGNVDLVKFLLEHGADVNAKDKLGYTPLHQAAQQGHNDIAELLLKHGASVNAAD 603 (1143)
T ss_pred HhcCCchHHHHhhhCCccccccCCCCCChhhHHHHcChHHHHHHHHHcCCCCCccc
Confidence 99999999999999999999999999999999999999999999999999999876
No 52
>PHA02946 ankyin-like protein; Provisional
Probab=99.71 E-value=2.2e-17 Score=154.84 Aligned_cols=93 Identities=18% Similarity=0.257 Sum_probs=61.6
Q ss_pred HHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcC--CHHHHHHHHHCCCCCCccCCCCCCHhhHhhhcC--c
Q 022481 201 GLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFN--RTDIAFILMESGANMDCKNAQGESPLDCAPVTL--Q 276 (296)
Q Consensus 201 ~Lh~A~~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g--~~~iv~~LL~~ga~~~~~d~~g~TpL~~A~~~g--~ 276 (296)
||| |+..|+.+++++|++.|++++.+|..|+||||+|+..+ +.+++++|+++|++++.+|.+|+||||+|+..+ +
T Consensus 144 pL~-aa~~~~~~vv~~Ll~~gad~~~~d~~G~t~Lh~A~~~~~~~~~~v~~Ll~~Gadin~~d~~G~TpLH~Aa~~~~~~ 222 (446)
T PHA02946 144 PLL-ACTDPSERVFKKIMSIGFEARIVDKFGKNHIHRHLMSDNPKASTISWMMKLGISPSKPDHDGNTPLHIVCSKTVKN 222 (446)
T ss_pred HHH-HHHCCChHHHHHHHhccccccccCCCCCCHHHHHHHhcCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCCc
Confidence 554 33445555566666666666666666777777766543 356777777777777777777777777777664 6
Q ss_pred HHHHHHHHHcCCCCCCCCC
Q 022481 277 YKMRQKMEEDKNNVGSTTS 295 (296)
Q Consensus 277 ~~iv~~Ll~~gadi~~~n~ 295 (296)
.+++++|++ |+++|.+|+
T Consensus 223 ~~iv~lLl~-gadin~~d~ 240 (446)
T PHA02946 223 VDIINLLLP-STDVNKQNK 240 (446)
T ss_pred HHHHHHHHc-CCCCCCCCC
Confidence 677777774 777777664
No 53
>KOG0514 consensus Ankyrin repeat protein [General function prediction only]
Probab=99.70 E-value=3.7e-17 Score=142.40 Aligned_cols=121 Identities=18% Similarity=0.206 Sum_probs=93.2
Q ss_pred CCCCCCcCcccccCCC-CCCCCCCCCCccccc-------------------------------cChHHHHHHHHcCCHHH
Q 022481 166 RGSTSNSNFSSIFNPG-QVTNGATDKPRMEYE-------------------------------VNGEGLRDAIKNGDAAA 213 (296)
Q Consensus 166 ~~~~~~~~~~~ll~~g-~~~~~~~~~~~~~~~-------------------------------~~~t~Lh~A~~~g~~~~ 213 (296)
.+.++..+|+.||+.| .+++.++..|.++.- .|+|+||+|+.+|+.++
T Consensus 276 VSHaNF~VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~mgnVNaKAsQ~gQTALMLAVSHGr~d~ 355 (452)
T KOG0514|consen 276 VSHANFDVVSILLDSGVCDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKMGDVNAKASQHGQTALMLAVSHGRVDM 355 (452)
T ss_pred ecccchHHHHHHhccCcccccccccccccHHHHHHHHhhcchhhHHHHHHHHhccCcchhhhhhcchhhhhhhhcCcHHH
Confidence 3445777888999887 678888877665331 46778888888888888
Q ss_pred HHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHC-CCCCCccCCCCCCHhhHhhhcCcHHHHHHHHHc
Q 022481 214 VKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMES-GANMDCKNAQGESPLDCAPVTLQYKMRQKMEED 286 (296)
Q Consensus 214 v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~iv~~LL~~-ga~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ 286 (296)
|+.||..|+|||.+|.+|-|+||.|+.+||.+|+++||.. ++|+...|.+|.|+|.+|...|+.+|.-+|..+
T Consensus 356 vk~LLacgAdVNiQDdDGSTALMCA~EHGhkEivklLLA~p~cd~sLtD~DgSTAl~IAleagh~eIa~mlYa~ 429 (452)
T KOG0514|consen 356 VKALLACGADVNIQDDDGSTALMCAAEHGHKEIVKLLLAVPSCDISLTDVDGSTALSIALEAGHREIAVMLYAH 429 (452)
T ss_pred HHHHHHccCCCccccCCccHHHhhhhhhChHHHHHHHhccCcccceeecCCCchhhhhHHhcCchHHHHHHHHH
Confidence 8888888888888888888888888888888888888776 778888888888888888888888877666543
No 54
>PHA02917 ankyrin-like protein; Provisional
Probab=99.69 E-value=4.6e-17 Score=158.81 Aligned_cols=119 Identities=10% Similarity=0.147 Sum_probs=102.7
Q ss_pred CCCCCCcCcccccCCCCCCCCCCCCCccccccChHHHHHHH--HcCCHHHHHHHHHcCCCCcccCC---CC---------
Q 022481 166 RGSTSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAI--KNGDAAAVKKLLSEGVDANFCDK---QG--------- 231 (296)
Q Consensus 166 ~~~~~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~--~~g~~~~v~~Ll~~gadvn~~d~---~g--------- 231 (296)
+..+...++++|++.|+++|..+..+.+ |||+|+ ..|+.+++++||++|+++|..|. .|
T Consensus 111 ~~~~~~e~vk~Ll~~Gadin~~d~~g~T-------~L~~~~a~~~~~~eivklLi~~Ga~vn~~d~~~~~g~~~~~~~~~ 183 (661)
T PHA02917 111 SKNVDVDLIKVLVEHGFDLSVKCENHRS-------VIENYVMTDDPVPEIIDLFIENGCSVLYEDEDDEYGYAYDDYQPR 183 (661)
T ss_pred hhcCCHHHHHHHHHcCCCCCccCCCCcc-------HHHHHHHccCCCHHHHHHHHHcCCCcccccccccccccccccccc
Confidence 3445678899999999999999888777 999654 57899999999999999987653 34
Q ss_pred --CcHHHHHHH-----------cCCHHHHHHHHHCCCCCCccCCCCCCHhhHhhhcCcH--HHHHHHHHcCCCCCC
Q 022481 232 --MSLLHLAAL-----------FNRTDIAFILMESGANMDCKNAQGESPLDCAPVTLQY--KMRQKMEEDKNNVGS 292 (296)
Q Consensus 232 --~TpLh~A~~-----------~g~~~iv~~LL~~ga~~~~~d~~g~TpL~~A~~~g~~--~iv~~Ll~~gadi~~ 292 (296)
.||||+|+. +++.+++++|+++|||+|.+|.+|.||||+|+..|+. ++|++|++ |++++.
T Consensus 184 ~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~Gadvn~~d~~G~TpLh~A~~~g~~~~eivk~Li~-g~d~~~ 258 (661)
T PHA02917 184 NCGTVLHLYIISHLYSESDTRAYVRPEVVKCLINHGIKPSSIDKNYCTALQYYIKSSHIDIDIVKLLMK-GIDNTA 258 (661)
T ss_pred ccccHHHHHHhhcccccccccccCcHHHHHHHHHCCCCcccCCCCCCcHHHHHHHcCCCcHHHHHHHHh-CCcccc
Confidence 599999986 5689999999999999999999999999999999985 79999985 887753
No 55
>KOG0514 consensus Ankyrin repeat protein [General function prediction only]
Probab=99.69 E-value=2.5e-17 Score=143.43 Aligned_cols=104 Identities=22% Similarity=0.324 Sum_probs=88.4
Q ss_pred CCCCCCCCccccccChHHHHHHHHcCCHHHHHHHHHcC-CCCcccCC---------------------------------
Q 022481 184 TNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEG-VDANFCDK--------------------------------- 229 (296)
Q Consensus 184 ~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~g-advn~~d~--------------------------------- 229 (296)
+|..|.+|++ +|||++.++++++|+.||+.| +++|.+|+
T Consensus 261 VNlaDsNGNT-------ALHYsVSHaNF~VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~mgnVN 333 (452)
T KOG0514|consen 261 VNLADSNGNT-------ALHYAVSHANFDVVSILLDSGVCDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKMGDVN 333 (452)
T ss_pred hhhhcCCCCe-------eeeeeecccchHHHHHHhccCcccccccccccccHHHHHHHHhhcchhhHHHHHHHHhccCcc
Confidence 4566655555 999999999999999999987 56666554
Q ss_pred -----CCCcHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHhhHhhhcCcHHHHHHHHHc-CCCCCCCC
Q 022481 230 -----QGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEED-KNNVGSTT 294 (296)
Q Consensus 230 -----~g~TpLh~A~~~g~~~iv~~LL~~ga~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~-gadi~~~n 294 (296)
.|.|+||+|+.+|+.++|+.||.-|||+|.+|.+|.|+|+.|+.+|+.||+++||.. +.|+..+|
T Consensus 334 aKAsQ~gQTALMLAVSHGr~d~vk~LLacgAdVNiQDdDGSTALMCA~EHGhkEivklLLA~p~cd~sLtD 404 (452)
T KOG0514|consen 334 AKASQHGQTALMLAVSHGRVDMVKALLACGADVNIQDDDGSTALMCAAEHGHKEIVKLLLAVPSCDISLTD 404 (452)
T ss_pred hhhhhhcchhhhhhhhcCcHHHHHHHHHccCCCccccCCccHHHhhhhhhChHHHHHHHhccCcccceeec
Confidence 356678888889999999999999999999999999999999999999999999975 77776655
No 56
>PHA02876 ankyrin repeat protein; Provisional
Probab=99.68 E-value=1.5e-16 Score=157.16 Aligned_cols=114 Identities=23% Similarity=0.332 Sum_probs=67.2
Q ss_pred CcccccCCCCCCCCCCCCCccccccChHHHHHHHHcC-CHHHHHHHHHcCCCCcccCCCCCcHHHHHHHc-CCHHHHHHH
Q 022481 173 NFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNG-DAAAVKKLLSEGVDANFCDKQGMSLLHLAALF-NRTDIAFIL 250 (296)
Q Consensus 173 ~~~~ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g-~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~-g~~~iv~~L 250 (296)
++++|+..|++++..+..+.+ |||+|+..| +.+++++|+..|++++..|..|+||||+|+.. ++.+++++|
T Consensus 289 iv~lLl~~gadin~~d~~g~T-------pLh~Aa~~g~~~~~v~~Ll~~gadin~~d~~g~TpLh~A~~~~~~~~iv~lL 361 (682)
T PHA02876 289 LVPKLLERGADVNAKNIKGET-------PLYLMAKNGYDTENIRTLIMLGADVNAADRLYITPLHQASTLDRNKDIVITL 361 (682)
T ss_pred HHHHHHHCCCCCCCcCCCCCC-------HHHHHHHhCCCHHHHHHHHHcCCCCCCcccCCCcHHHHHHHhCCcHHHHHHH
Confidence 566677777777766655554 666666655 35555555555555555555555555555543 345555555
Q ss_pred HHCCCCCCccCCCCCCHhhHhhhcCcHHHHHHHHHcCCCCCCC
Q 022481 251 MESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKNNVGST 293 (296)
Q Consensus 251 L~~ga~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gadi~~~ 293 (296)
+++|++++.+|..|.||||+|+..|+.+++++|+++|++++..
T Consensus 362 l~~gadin~~d~~G~TpLh~Aa~~~~~~iv~~Ll~~gad~~~~ 404 (682)
T PHA02876 362 LELGANVNARDYCDKTPIHYAAVRNNVVIINTLLDYGADIEAL 404 (682)
T ss_pred HHcCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcccc
Confidence 5555555555555555555555555555555555555555543
No 57
>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]
Probab=99.68 E-value=8.8e-18 Score=137.15 Aligned_cols=124 Identities=21% Similarity=0.142 Sum_probs=111.8
Q ss_pred CCCCCCCCcCcccccCCCCCCCCCCCCCccccccChHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCC
Q 022481 164 RSRGSTSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNR 243 (296)
Q Consensus 164 ~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~ 243 (296)
=++..+....+++||+.|++++.......+ +|+.|...|..++|++||.++.|+|..|.+|-|||.||++.++
T Consensus 166 WAaa~G~i~vV~fLL~~GAdp~~lgk~res-------ALsLAt~ggytdiV~lLL~r~vdVNvyDwNGgTpLlyAvrgnh 238 (296)
T KOG0502|consen 166 WAAAKGHIPVVQFLLNSGADPDALGKYRES-------ALSLATRGGYTDIVELLLTREVDVNVYDWNGGTPLLYAVRGNH 238 (296)
T ss_pred HHHhcCchHHHHHHHHcCCChhhhhhhhhh-------hHhHHhcCChHHHHHHHHhcCCCcceeccCCCceeeeeecCCh
Confidence 344557778899999999999988776665 9999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHCCCCCCccCCCCCCHhhHhhhcCcHHHHHHHHHcCCCCCCCCC
Q 022481 244 TDIAFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKNNVGSTTS 295 (296)
Q Consensus 244 ~~iv~~LL~~ga~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gadi~~~n~ 295 (296)
.++++.||..||+++..+..|++++.+|+..|+. +|+..+++-+.++.+|+
T Consensus 239 vkcve~Ll~sGAd~t~e~dsGy~~mdlAValGyr-~Vqqvie~h~lkl~Q~~ 289 (296)
T KOG0502|consen 239 VKCVESLLNSGADVTQEDDSGYWIMDLAVALGYR-IVQQVIEKHALKLCQDS 289 (296)
T ss_pred HHHHHHHHhcCCCcccccccCCcHHHHHHHhhhH-HHHHHHHHHHHHHhhcc
Confidence 9999999999999999999999999999999988 88888887776655553
No 58
>PHA02736 Viral ankyrin protein; Provisional
Probab=99.67 E-value=9.8e-17 Score=129.28 Aligned_cols=96 Identities=22% Similarity=0.268 Sum_probs=79.4
Q ss_pred ChHHHHHHHHcCCHHHHHHHHHcCC--C-----CcccCCCCCcHHHHHHHcCCHH---HHHHHHHCCCCCCccCC-CCCC
Q 022481 198 NGEGLRDAIKNGDAAAVKKLLSEGV--D-----ANFCDKQGMSLLHLAALFNRTD---IAFILMESGANMDCKNA-QGES 266 (296)
Q Consensus 198 ~~t~Lh~A~~~g~~~~v~~Ll~~ga--d-----vn~~d~~g~TpLh~A~~~g~~~---iv~~LL~~ga~~~~~d~-~g~T 266 (296)
|.||||+|+..|+. +.+++..+. + ++..|..|+||||+|+..|+.+ ++++|+++|++++.+|. .|+|
T Consensus 17 g~tpLh~A~~~g~~--~~l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gadin~~~~~~g~T 94 (154)
T PHA02736 17 GENILHYLCRNGGV--TDLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLMEWGADINGKERVFGNT 94 (154)
T ss_pred CCCHHHHHHHhCCH--HHHHHHHHHhcchhHHHHHHhcCCCCEEEEeecccCchhHHHHHHHHHHcCCCccccCCCCCCc
Confidence 45599999999984 333332222 2 3456889999999999999874 68899999999999984 8999
Q ss_pred HhhHhhhcCcHHHHHHHHH-cCCCCCCCCC
Q 022481 267 PLDCAPVTLQYKMRQKMEE-DKNNVGSTTS 295 (296)
Q Consensus 267 pL~~A~~~g~~~iv~~Ll~-~gadi~~~n~ 295 (296)
|||+|+..|+.+++++|+. .|++++.+|.
T Consensus 95 ~Lh~A~~~~~~~i~~~Ll~~~g~d~n~~~~ 124 (154)
T PHA02736 95 PLHIAVYTQNYELATWLCNQPGVNMEILNY 124 (154)
T ss_pred HHHHHHHhCCHHHHHHHHhCCCCCCccccC
Confidence 9999999999999999998 5999998764
No 59
>KOG1729 consensus FYVE finger containing protein [General function prediction only]
Probab=99.66 E-value=1.2e-17 Score=144.76 Aligned_cols=67 Identities=37% Similarity=0.776 Sum_probs=62.4
Q ss_pred CCCCCCCccccccccccc-cccccccccccccccceEcCCCCCCceecCCCCCCCceeccccchhhhcc
Q 022481 2 SIEPPAFQEATRCDVCKC-SFNTFRRRHHCRCCGRTLCHEHSSDQMTLPQFGIHTNVRVCADCFNSSSR 69 (296)
Q Consensus 2 ~~~w~~~~~~~~C~~C~~-~f~~~~r~hhCr~Cg~~~C~~c~~~~~~~~~~~~~~~~rvC~~C~~~~~~ 69 (296)
.-.|.||.++..|+.|++ .|+++.||||||+||.|||..|+.+++.+|... .+++|||+.||..+..
T Consensus 159 ~~~W~PD~ea~~C~~C~~~~Ftl~~RRHHCR~CG~ivC~~Cs~n~~~l~~~~-~k~~rvC~~CF~el~~ 226 (288)
T KOG1729|consen 159 AAVWLPDSEATECMVCGCTEFTLSERRHHCRNCGDIVCAPCSRNRFLLPNLS-TKPIRVCDICFEELEK 226 (288)
T ss_pred CCcccCcccceecccCCCccccHHHHHHHHHhcchHhhhhhhcCcccccccC-CCCceecHHHHHHHhc
Confidence 357999999999999999 999999999999999999999999998887776 6899999999999976
No 60
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=99.65 E-value=8.5e-16 Score=154.48 Aligned_cols=97 Identities=24% Similarity=0.335 Sum_probs=86.6
Q ss_pred hHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHhhHhhhc----
Q 022481 199 GEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCAPVT---- 274 (296)
Q Consensus 199 ~t~Lh~A~~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~iv~~LL~~ga~~~~~d~~g~TpL~~A~~~---- 274 (296)
.++||.||..|+.++++.|++.|+|+|..|..|.||||+|+..|+.+++++|+++|+++|.+|.+|+||||+|+..
T Consensus 526 ~~~L~~Aa~~g~~~~l~~Ll~~G~d~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadin~~d~~G~TpL~~A~~~g~~~ 605 (823)
T PLN03192 526 ASNLLTVASTGNAALLEELLKAKLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNVHIRDANGNTALWNAISAKHHK 605 (823)
T ss_pred hhHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcChHHHHHHHHhcCCCCCCcCCCCCCHHHHHHHhCCHH
Confidence 3589999999999999999999999999999999999999999999999999999999999999999999866554
Q ss_pred ---------------------------CcHHHHHHHHHcCCCCCCCCC
Q 022481 275 ---------------------------LQYKMRQKMEEDKNNVGSTTS 295 (296)
Q Consensus 275 ---------------------------g~~~iv~~Ll~~gadi~~~n~ 295 (296)
|+.+++++|+++|+|+|.+|+
T Consensus 606 iv~~L~~~~~~~~~~~~~~~L~~Aa~~g~~~~v~~Ll~~Gadin~~d~ 653 (823)
T PLN03192 606 IFRILYHFASISDPHAAGDLLCTAAKRNDLTAMKELLKQGLNVDSEDH 653 (823)
T ss_pred HHHHHHhcCcccCcccCchHHHHHHHhCCHHHHHHHHHCCCCCCCCCC
Confidence 455566667788888887764
No 61
>KOG1818 consensus Membrane trafficking and cell signaling protein HRS, contains VHS and FYVE domains [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.65 E-value=4.7e-17 Score=152.42 Aligned_cols=70 Identities=36% Similarity=0.861 Sum_probs=65.2
Q ss_pred CCCCCccccccccccccccccccccccccccceEcCCCCCCceecCCCCCCCceeccccchhhhcccCCC
Q 022481 4 EPPAFQEATRCDVCKCSFNTFRRRHHCRCCGRTLCHEHSSDQMTLPQFGIHTNVRVCADCFNSSSRTGKD 73 (296)
Q Consensus 4 ~w~~~~~~~~C~~C~~~f~~~~r~hhCr~Cg~~~C~~c~~~~~~~~~~~~~~~~rvC~~C~~~~~~~~~~ 73 (296)
.-+.|.+...|+.|..+|++|+|+||||+||+|||..|+++.+.+|.+|++++||||+.||+.+.+....
T Consensus 158 ~~pdW~D~~~C~rCr~~F~~~~rkHHCr~CG~vFC~qcss~s~~lP~~Gi~~~VRVCd~C~E~l~~~s~~ 227 (634)
T KOG1818|consen 158 TAPDWIDSEECLRCRVKFGLTNRKHHCRNCGQVFCGQCSSKSLTLPKLGIEKPVRVCDSCYELLTRASVG 227 (634)
T ss_pred CCcccccccccceeeeeeeeccccccccccchhhccCccccccCcccccccccceehhhhHHHhhhcccc
Confidence 4567888899999999999999999999999999999999999999999999999999999999877555
No 62
>PHA02792 ankyrin-like protein; Provisional
Probab=99.63 E-value=7.8e-16 Score=146.39 Aligned_cols=117 Identities=13% Similarity=0.058 Sum_probs=100.7
Q ss_pred CCcCcccccCCCCCCCCCCCCCccccccChHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCC--CcHHHHHHHcCCH---
Q 022481 170 SNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQG--MSLLHLAALFNRT--- 244 (296)
Q Consensus 170 ~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~gadvn~~d~~g--~TpLh~A~~~g~~--- 244 (296)
...++++|++.|++.+. ... ...++.|+..|+.++|++|+++|++++.+|..| .||||+|......
T Consensus 320 ~ieiIK~LId~Ga~~~r--~~~-------~n~~~~Aa~~gn~eIVelLIs~GADIN~kD~~g~~~TpLh~A~~n~~~~v~ 390 (631)
T PHA02792 320 YINVIKCMIDEGATLYR--FKH-------INKYFQKFDNRDPKVVEYILKNGNVVVEDDDNIINIMPLFPTLSIHESDVL 390 (631)
T ss_pred cHHHHHHHHHCCCcccc--CCc-------chHHHHHHHcCCHHHHHHHHHcCCchhhhcCCCCChhHHHHHHHhccHhHH
Confidence 44557889999998752 112 227999999999999999999999999999775 6999998777654
Q ss_pred HHHHHHHHCCCCCCccCCCCCCHhhHhhhcCcHHHHHHHHHcCCCCCCCCC
Q 022481 245 DIAFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKNNVGSTTS 295 (296)
Q Consensus 245 ~iv~~LL~~ga~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gadi~~~n~ 295 (296)
+++++|+++||++|.+|..|+||||+|+..++.+++++|+++|++++.+|.
T Consensus 391 ~IlklLIs~GADIN~kD~~G~TPLh~Aa~~~n~eivelLLs~GADIN~kD~ 441 (631)
T PHA02792 391 SILKLCKPYIDDINKIDKHGRSILYYCIESHSVSLVEWLIDNGADINITTK 441 (631)
T ss_pred HHHHHHHhcCCccccccccCcchHHHHHHcCCHHHHHHHHHCCCCCCCcCC
Confidence 468899999999999999999999999999999999999999999998875
No 63
>KOG0510 consensus Ankyrin repeat protein [General function prediction only]
Probab=99.63 E-value=3.3e-16 Score=148.45 Aligned_cols=135 Identities=19% Similarity=0.155 Sum_probs=113.4
Q ss_pred CCCccccCCCCCCCCcCcccccCCCCCCCCCCC--------CCccccccChHHHHHHHHcCCHHHHHHHHHcCCCCcccC
Q 022481 157 KKTENTARSRGSTSNSNFSSIFNPGQVTNGATD--------KPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCD 228 (296)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~ll~~g~~~~~~~~--------~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~gadvn~~d 228 (296)
....+...+...+....++.+|+.|........ .-......|.||||+|++.|+.+.++.|+..|++++.++
T Consensus 224 ~~~~pLhlAve~g~~e~lk~~L~n~~~~a~~~~~~~~q~kelv~~~d~dg~tpLH~a~r~G~~~svd~Ll~~Ga~I~~kn 303 (929)
T KOG0510|consen 224 EKATPLHLAVEGGDIEMLKMCLQNGKKIADVQLDAMQQEKELVNDEDNDGCTPLHYAARQGGPESVDNLLGFGASINSKN 303 (929)
T ss_pred CCCcchhhhhhcCCHHHHHHHHhCccccchhhhHHHHHHHHHhhcccccCCchHHHHHHcCChhHHHHHHHcCCcccccC
Confidence 455666667777888888888888765533220 012223356779999999999999999999999999999
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHHH-CC-CCCCccCCCCCCHhhHhhhcCcHHHHHHHHHcCCCCC
Q 022481 229 KQGMSLLHLAALFNRTDIAFILME-SG-ANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKNNVG 291 (296)
Q Consensus 229 ~~g~TpLh~A~~~g~~~iv~~LL~-~g-a~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gadi~ 291 (296)
.++.||||.|+.+|+...++-||+ .| ..+|..|..|.||||+|+..|+.+++++||+.||+..
T Consensus 304 ~d~~spLH~AA~yg~~ntv~rLL~~~~~rllne~D~~g~tpLHlaa~~gH~~v~qlLl~~GA~~~ 368 (929)
T KOG0510|consen 304 KDEESPLHFAAIYGRINTVERLLQESDTRLLNESDLHGMTPLHLAAKSGHDRVVQLLLNKGALFL 368 (929)
T ss_pred CCCCCchHHHHHcccHHHHHHHHhCcCccccccccccCCCchhhhhhcCHHHHHHHHHhcChhhh
Confidence 999999999999999999999999 54 5678899999999999999999999999999999876
No 64
>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional
Probab=99.63 E-value=1.6e-15 Score=148.68 Aligned_cols=94 Identities=26% Similarity=0.350 Sum_probs=89.9
Q ss_pred HHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHhhHhhhcCcHHHH
Q 022481 201 GLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCAPVTLQYKMR 280 (296)
Q Consensus 201 ~Lh~A~~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~iv~~LL~~ga~~~~~d~~g~TpL~~A~~~g~~~iv 280 (296)
.|+.|+..|+.+.+++|++.|+++|.+|..|+||||+|+..|+.+++++||++|++++.+|..|+||||+|+..|+.+++
T Consensus 85 ~L~~aa~~G~~~~vk~LL~~Gadin~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadvn~~d~~G~TpLh~A~~~g~~~iv 164 (664)
T PTZ00322 85 ELCQLAASGDAVGARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEENGFREVV 164 (664)
T ss_pred HHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCcHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHc-------CCCCCCCC
Q 022481 281 QKMEED-------KNNVGSTT 294 (296)
Q Consensus 281 ~~Ll~~-------gadi~~~n 294 (296)
++|+++ |++++..+
T Consensus 165 ~~Ll~~~~~~~~~ga~~~~~~ 185 (664)
T PTZ00322 165 QLLSRHSQCHFELGANAKPDS 185 (664)
T ss_pred HHHHhCCCcccccCCCCCccc
Confidence 999999 77776554
No 65
>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]
Probab=99.62 E-value=3.8e-15 Score=135.17 Aligned_cols=93 Identities=27% Similarity=0.378 Sum_probs=87.9
Q ss_pred HHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHhhHhhhcCcHHHH
Q 022481 201 GLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCAPVTLQYKMR 280 (296)
Q Consensus 201 ~Lh~A~~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~iv~~LL~~ga~~~~~d~~g~TpL~~A~~~g~~~iv 280 (296)
.|..|+..|.+++|+.++..--|+...+..|.|+||-|+..||++||+|||+.|+|+|+.|.+||||||.|+..++..|+
T Consensus 553 LLLDaaLeGEldlVq~~i~ev~DpSqpNdEGITaLHNAiCaghyeIVkFLi~~ganVNa~DSdGWTPLHCAASCNnv~~c 632 (752)
T KOG0515|consen 553 LLLDAALEGELDLVQRIIYEVTDPSQPNDEGITALHNAICAGHYEIVKFLIEFGANVNAADSDGWTPLHCAASCNNVPMC 632 (752)
T ss_pred HHHhhhhcchHHHHHHHHHhhcCCCCCCccchhHHhhhhhcchhHHHHHHHhcCCcccCccCCCCchhhhhhhcCchHHH
Confidence 46779999999999999988889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCCCC
Q 022481 281 QKMEEDKNNVGST 293 (296)
Q Consensus 281 ~~Ll~~gadi~~~ 293 (296)
+.|++.||-|.+.
T Consensus 633 kqLVe~GaavfAs 645 (752)
T KOG0515|consen 633 KQLVESGAAVFAS 645 (752)
T ss_pred HHHHhccceEEee
Confidence 9999999977553
No 66
>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A.
Probab=99.62 E-value=4e-16 Score=103.55 Aligned_cols=55 Identities=36% Similarity=0.634 Sum_probs=33.5
Q ss_pred HHHcC-CCCcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHhhHh
Q 022481 217 LLSEG-VDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCA 271 (296)
Q Consensus 217 Ll~~g-advn~~d~~g~TpLh~A~~~g~~~iv~~LL~~ga~~~~~d~~g~TpL~~A 271 (296)
||++| +++|.+|..|.||||+|+.+|+.+++++||++|++++.+|.+|+||||+|
T Consensus 1 LL~~~~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~~~~d~~G~Tpl~~A 56 (56)
T PF13857_consen 1 LLEHGPADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGADPNAKDKDGQTPLHYA 56 (56)
T ss_dssp -----T--TT---TTS--HHHHHHHHT-HHHHHHHHHCT--TT---TTS--HHHH-
T ss_pred CCccCcCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCCCCCCcCCCCCHHHhC
Confidence 67888 99999999999999999999999999999999999999999999999987
No 67
>PHA02792 ankyrin-like protein; Provisional
Probab=99.61 E-value=1.1e-15 Score=145.46 Aligned_cols=122 Identities=16% Similarity=0.139 Sum_probs=104.9
Q ss_pred CCCCCCCcCcccccCCCCCCCCCCCCCccccccChHHHHHHHHcCCH---HHHHHHHHcCCCCcccCCCCCcHHHHHHHc
Q 022481 165 SRGSTSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDA---AAVKKLLSEGVDANFCDKQGMSLLHLAALF 241 (296)
Q Consensus 165 ~~~~~~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~---~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~ 241 (296)
++..+...++++|+..|++++..+..+. +.||||+|+..... +++++|+++|+++|.+|..|+||||+|+..
T Consensus 346 Aa~~gn~eIVelLIs~GADIN~kD~~g~-----~~TpLh~A~~n~~~~v~~IlklLIs~GADIN~kD~~G~TPLh~Aa~~ 420 (631)
T PHA02792 346 KFDNRDPKVVEYILKNGNVVVEDDDNII-----NIMPLFPTLSIHESDVLSILKLCKPYIDDINKIDKHGRSILYYCIES 420 (631)
T ss_pred HHHcCCHHHHHHHHHcCCchhhhcCCCC-----ChhHHHHHHHhccHhHHHHHHHHHhcCCccccccccCcchHHHHHHc
Confidence 3456677889999999999998876543 23599998877654 468889999999999999999999999999
Q ss_pred CCHHHHHHHHHCCCCCCccCCCCCCHhhHhhh----------cCcHHHHHHHHHcCCCCC
Q 022481 242 NRTDIAFILMESGANMDCKNAQGESPLDCAPV----------TLQYKMRQKMEEDKNNVG 291 (296)
Q Consensus 242 g~~~iv~~LL~~ga~~~~~d~~g~TpL~~A~~----------~g~~~iv~~Ll~~gadi~ 291 (296)
++.+++++|+++|++++.+|..|.||||+|.. ....+++++||++|.+++
T Consensus 421 ~n~eivelLLs~GADIN~kD~~G~TpL~~A~~~~~~~~~~i~~~~~~il~lLLs~~p~i~ 480 (631)
T PHA02792 421 HSVSLVEWLIDNGADINITTKYGSTCIGICVILAHACIPEIAELYIKILEIILSKLPTIE 480 (631)
T ss_pred CCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHHHhcccHHHHHHHHHHHHHHHhcCCChh
Confidence 99999999999999999999999999999975 223677999999998765
No 68
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=99.61 E-value=1.2e-15 Score=111.23 Aligned_cols=83 Identities=31% Similarity=0.390 Sum_probs=71.3
Q ss_pred CCCCcCcccccCCCCCCCCCCCCCccccccChHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHH
Q 022481 168 STSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIA 247 (296)
Q Consensus 168 ~~~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~iv 247 (296)
.+....++.|+..+.+.+. +.+ +||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++
T Consensus 7 ~~~~~~~~~ll~~~~~~~~----~~~-------~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~ 75 (89)
T PF12796_consen 7 NGNLEILKFLLEKGADINL----GNT-------ALHYAAENGNLEIVKLLLENGADINSQDKNGNTALHYAAENGNLEIV 75 (89)
T ss_dssp TTTHHHHHHHHHTTSTTTS----SSB-------HHHHHHHTTTHHHHHHHHHTTTCTT-BSTTSSBHHHHHHHTTHHHHH
T ss_pred cCCHHHHHHHHHCcCCCCC----CCC-------HHHHHHHcCCHHHHHHHHHhcccccccCCCCCCHHHHHHHcCCHHHH
Confidence 3455667788887776665 333 99999999999999999999999999999999999999999999999
Q ss_pred HHHHHCCCCCCccC
Q 022481 248 FILMESGANMDCKN 261 (296)
Q Consensus 248 ~~LL~~ga~~~~~d 261 (296)
++|+++|++++.+|
T Consensus 76 ~~Ll~~g~~~~~~n 89 (89)
T PF12796_consen 76 KLLLEHGADVNIRN 89 (89)
T ss_dssp HHHHHTTT-TTSS-
T ss_pred HHHHHcCCCCCCcC
Confidence 99999999999876
No 69
>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.61 E-value=6.4e-16 Score=140.77 Aligned_cols=122 Identities=20% Similarity=0.229 Sum_probs=101.8
Q ss_pred CCCCCcCcccccCCCCCCCCCCCCCccccccChHHHHHHHHcCCHHHHHHHHHcCCCCcc--------------------
Q 022481 167 GSTSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANF-------------------- 226 (296)
Q Consensus 167 ~~~~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~gadvn~-------------------- 226 (296)
......++.+|++.|+++|..+..+|+ |||.|+..|++.++++||.+|+++..
T Consensus 82 id~~~e~v~~l~e~ga~Vn~~d~e~wt-------Plhaaascg~~~i~~~li~~gA~~~avNsdg~~P~dl~e~ea~~~~ 154 (527)
T KOG0505|consen 82 IDDNLEMVKFLVENGANVNAQDNEGWT-------PLHAAASCGYLNIVEYLIQHGANLLAVNSDGNMPYDLAEDEATLDV 154 (527)
T ss_pred hcccHHHHHHHHHhcCCccccccccCC-------cchhhcccccHHHHHHHHHhhhhhhhccCCCCCccccccCcchhHH
Confidence 334556688888888888888877777 88888888888888888888764222
Q ss_pred ---------------------------------------cCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCH
Q 022481 227 ---------------------------------------CDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESP 267 (296)
Q Consensus 227 ---------------------------------------~d~~g~TpLh~A~~~g~~~iv~~LL~~ga~~~~~d~~g~Tp 267 (296)
.+..|-|.||.|+.+|.+++.++||++|.+++.+|.+||||
T Consensus 155 l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l~~G~~~d~~~~rG~T~lHvAaa~Gy~e~~~lLl~ag~~~~~~D~dgWtP 234 (527)
T KOG0505|consen 155 LETEMARQGIDIEAARKAEEQTMLDDARQWLNAGAELDARHARGATALHVAAANGYTEVAALLLQAGYSVNIKDYDGWTP 234 (527)
T ss_pred HHHHHHHhcccHHHHhhhhHHHHHHHHHHHHhccccccccccccchHHHHHHhhhHHHHHHHHHHhccCcccccccCCCc
Confidence 12347788999999999999999999999999999999999
Q ss_pred hhHhhhcCcHHHHHHHHHcCCCCCCCCC
Q 022481 268 LDCAPVTLQYKMRQKMEEDKNNVGSTTS 295 (296)
Q Consensus 268 L~~A~~~g~~~iv~~Ll~~gadi~~~n~ 295 (296)
||.|+..|..+++++|+++|+++++.+.
T Consensus 235 lHAAA~Wg~~~~~elL~~~ga~~d~~t~ 262 (527)
T KOG0505|consen 235 LHAAAHWGQEDACELLVEHGADMDAKTK 262 (527)
T ss_pred ccHHHHhhhHhHHHHHHHhhcccchhhh
Confidence 9999999999999999999999987654
No 70
>PHA02730 ankyrin-like protein; Provisional
Probab=99.60 E-value=5.3e-15 Score=142.10 Aligned_cols=96 Identities=16% Similarity=0.209 Sum_probs=85.9
Q ss_pred ChHHHHHHHHcC---CHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcC--CHHHHHHHHHCCC--CCCccCCCCCCHhhH
Q 022481 198 NGEGLRDAIKNG---DAAAVKKLLSEGVDANFCDKQGMSLLHLAALFN--RTDIAFILMESGA--NMDCKNAQGESPLDC 270 (296)
Q Consensus 198 ~~t~Lh~A~~~g---~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g--~~~iv~~LL~~ga--~~~~~d~~g~TpL~~ 270 (296)
|.||||+|+..| +.++|++||++||+++.+|..|+||||+|+..+ +.+++++||++|+ +++..+..+.+||+.
T Consensus 41 G~TaLh~A~~~~~~~~~eivklLLs~GAdin~kD~~G~TPLh~Aa~~~~~~~eIv~~Ll~~~~~~~~~~~~~~~d~~l~~ 120 (672)
T PHA02730 41 GNNALHCYVSNKCDTDIKIVRLLLSRGVERLCRNNEGLTPLGVYSKRKYVKSQIVHLLISSYSNASNELTSNINDFDLYS 120 (672)
T ss_pred CCcHHHHHHHcCCcCcHHHHHHHHhCCCCCcccCCCCCChHHHHHHcCCCcHHHHHHHHhcCCCCCcccccccCCchHHH
Confidence 445999999997 599999999999999999999999999999976 7999999999965 558888889999999
Q ss_pred hhh--cCcHHHHHHHHH-cCCCCCCC
Q 022481 271 APV--TLQYKMRQKMEE-DKNNVGST 293 (296)
Q Consensus 271 A~~--~g~~~iv~~Ll~-~gadi~~~ 293 (296)
++. .++.++|++|++ .++|++..
T Consensus 121 y~~s~n~~~~~vk~Li~~~~~~~~~~ 146 (672)
T PHA02730 121 YMSSDNIDLRLLKYLIVDKRIRPSKN 146 (672)
T ss_pred HHHhcCCcHHHHHHHHHhcCCChhhh
Confidence 888 899999999996 67887765
No 71
>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;
Probab=99.59 E-value=3.5e-16 Score=104.32 Aligned_cols=55 Identities=45% Similarity=0.978 Sum_probs=50.9
Q ss_pred ccccccccccccccccccccccccceEcCCCCCCceecCCCCCCCceeccccchh
Q 022481 11 ATRCDVCKCSFNTFRRRHHCRCCGRTLCHEHSSDQMTLPQFGIHTNVRVCADCFN 65 (296)
Q Consensus 11 ~~~C~~C~~~f~~~~r~hhCr~Cg~~~C~~c~~~~~~~~~~~~~~~~rvC~~C~~ 65 (296)
+..|+.|+++|+++.||||||.||++||..|+.++..++.....+++|||+.||.
T Consensus 2 ~~~C~~C~~~F~~~~rk~~Cr~Cg~~~C~~C~~~~~~~~~~~~~~~~rvC~~C~~ 56 (57)
T cd00065 2 ASSCMGCGKPFTLTRRRHHCRNCGRIFCSKCSSNRIPLPSMGGGKPVRVCDSCYE 56 (57)
T ss_pred cCcCcccCccccCCccccccCcCcCCcChHHcCCeeecCcccCCCccEeChHHhC
Confidence 5689999999999999999999999999999999999887556799999999986
No 72
>KOG1819 consensus FYVE finger-containing proteins [General function prediction only]
Probab=99.59 E-value=2.3e-16 Score=142.22 Aligned_cols=63 Identities=38% Similarity=0.866 Sum_probs=60.3
Q ss_pred CCCCCccccccccccccccccccccccccccceEcCCCCCCceecCCCCCCCceeccc-----cchhh
Q 022481 4 EPPAFQEATRCDVCKCSFNTFRRRHHCRCCGRTLCHEHSSDQMTLPQFGIHTNVRVCA-----DCFNS 66 (296)
Q Consensus 4 ~w~~~~~~~~C~~C~~~f~~~~r~hhCr~Cg~~~C~~c~~~~~~~~~~~~~~~~rvC~-----~C~~~ 66 (296)
.|.||.++..||.|+.+|++|+||||||+||.|||..|+....++|.+|..+.+|||. .||..
T Consensus 894 awipd~~a~~cmacq~pf~afrrrhhcrncggifcg~cs~asapip~~gl~ka~rvcrpqsnldc~~r 961 (990)
T KOG1819|consen 894 AWIPDEDAEQCMACQMPFNAFRRRHHCRNCGGIFCGKCSCASAPIPEHGLDKAPRVCRPQSNLDCLTR 961 (990)
T ss_pred ccCCCCcchhhhhccCcHHHHHHhhhhcccCceeecccccCCCCCcccccccCceecCCcccccceee
Confidence 5999999999999999999999999999999999999999999999999999999999 78754
No 73
>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.
Probab=99.59 E-value=2.6e-14 Score=109.33 Aligned_cols=99 Identities=28% Similarity=0.391 Sum_probs=91.5
Q ss_pred cChHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHhhHhhhcCc
Q 022481 197 VNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCAPVTLQ 276 (296)
Q Consensus 197 ~~~t~Lh~A~~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~iv~~LL~~ga~~~~~d~~g~TpL~~A~~~g~ 276 (296)
.|.|+||+|+..++.+++++|++.|.+.+..+..|.||||+|+..++.+++++|+++|++++..+..|.||+|+|+..++
T Consensus 6 ~g~t~l~~a~~~~~~~~i~~li~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~ 85 (126)
T cd00204 6 DGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNARDKDGNTPLHLAARNGN 85 (126)
T ss_pred CCCCHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCc
Confidence 35569999999999999999999999988999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCCCCCC
Q 022481 277 YKMRQKMEEDKNNVGSTTS 295 (296)
Q Consensus 277 ~~iv~~Ll~~gadi~~~n~ 295 (296)
.+++++|+++|.+++..|.
T Consensus 86 ~~~~~~L~~~~~~~~~~~~ 104 (126)
T cd00204 86 LDVVKLLLKHGADVNARDK 104 (126)
T ss_pred HHHHHHHHHcCCCCcccCC
Confidence 9999999999988776653
No 74
>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]
Probab=99.59 E-value=1.1e-15 Score=129.58 Aligned_cols=119 Identities=24% Similarity=0.293 Sum_probs=104.0
Q ss_pred CCCCCCcCcccccCCCCCCCCCCCCCccccccChHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHH
Q 022481 166 RGSTSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTD 245 (296)
Q Consensus 166 ~~~~~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~ 245 (296)
+..+...+++.|+..|+.+|..+-...+ |||.|+.+|+.++|+.||++.+|+|+.+..|+||||||+.-|.-.
T Consensus 42 akegh~aivemll~rgarvn~tnmgddt-------plhlaaahghrdivqkll~~kadvnavnehgntplhyacfwgydq 114 (448)
T KOG0195|consen 42 AKEGHVAIVEMLLSRGARVNSTNMGDDT-------PLHLAAAHGHRDIVQKLLSRKADVNAVNEHGNTPLHYACFWGYDQ 114 (448)
T ss_pred hhcccHHHHHHHHhcccccccccCCCCc-------chhhhhhcccHHHHHHHHHHhcccchhhccCCCchhhhhhhcHHH
Confidence 3445667789999999999998766555 999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHCCCCCCccCCCCCCHhhHhhhcCcHHHHHHHHHcCCCCC
Q 022481 246 IAFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKNNVG 291 (296)
Q Consensus 246 iv~~LL~~ga~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gadi~ 291 (296)
|++-|+..||-++..|++|.|||..|.-.-...+.++..++|-++|
T Consensus 115 iaedli~~ga~v~icnk~g~tpldkakp~l~~~l~e~aek~gq~~n 160 (448)
T KOG0195|consen 115 IAEDLISCGAAVNICNKKGMTPLDKAKPMLKNTLLEIAEKHGQSPN 160 (448)
T ss_pred HHHHHHhccceeeecccCCCCchhhhchHHHHHHHHHHHHhCCCCC
Confidence 9999999999999999999999999865544455555566777766
No 75
>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.57 E-value=3.5e-15 Score=136.05 Aligned_cols=126 Identities=21% Similarity=0.225 Sum_probs=110.6
Q ss_pred cCCCCCCCCcCcccccCCCCCCCCCCCCCccccccChHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcC
Q 022481 163 ARSRGSTSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFN 242 (296)
Q Consensus 163 ~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g 242 (296)
..+...+....++.|+..|+.++..+..+.+ +||.++...+.++|++|+++|++||..|..||||||.|+-.|
T Consensus 45 l~A~~~~d~~ev~~ll~~ga~~~~~n~DglT-------alhq~~id~~~e~v~~l~e~ga~Vn~~d~e~wtPlhaaascg 117 (527)
T KOG0505|consen 45 LEACSRGDLEEVRKLLNRGASPNLCNVDGLT-------ALHQACIDDNLEMVKFLVENGANVNAQDNEGWTPLHAAASCG 117 (527)
T ss_pred HhccccccHHHHHHHhccCCCccccCCccch-------hHHHHHhcccHHHHHHHHHhcCCccccccccCCcchhhcccc
Confidence 4445567777899999999888777777666 999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHCCCCCCccC-----------------------------------------------------------CC
Q 022481 243 RTDIAFILMESGANMDCKN-----------------------------------------------------------AQ 263 (296)
Q Consensus 243 ~~~iv~~LL~~ga~~~~~d-----------------------------------------------------------~~ 263 (296)
+..++++||.+||++...| ..
T Consensus 118 ~~~i~~~li~~gA~~~avNsdg~~P~dl~e~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l~~G~~~d~~~~r 197 (527)
T KOG0505|consen 118 YLNIVEYLIQHGANLLAVNSDGNMPYDLAEDEATLDVLETEMARQGIDIEAARKAEEQTMLDDARQWLNAGAELDARHAR 197 (527)
T ss_pred cHHHHHHHHHhhhhhhhccCCCCCccccccCcchhHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHHHhccccccccccc
Confidence 9999999999887644332 34
Q ss_pred CCCHhhHhhhcCcHHHHHHHHHcCCCCCCCCC
Q 022481 264 GESPLDCAPVTLQYKMRQKMEEDKNNVGSTTS 295 (296)
Q Consensus 264 g~TpL~~A~~~g~~~iv~~Ll~~gadi~~~n~ 295 (296)
|-|.||+|+..|+.++.++|+++|.+++++|.
T Consensus 198 G~T~lHvAaa~Gy~e~~~lLl~ag~~~~~~D~ 229 (527)
T KOG0505|consen 198 GATALHVAAANGYTEVAALLLQAGYSVNIKDY 229 (527)
T ss_pred cchHHHHHHhhhHHHHHHHHHHhccCcccccc
Confidence 77999999999999999999999999998873
No 76
>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A ....
Probab=99.56 E-value=7.6e-15 Score=96.72 Aligned_cols=54 Identities=26% Similarity=0.411 Sum_probs=26.6
Q ss_pred CCcHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHhhHhhhcCcHHHHHHHH
Q 022481 231 GMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKME 284 (296)
Q Consensus 231 g~TpLh~A~~~g~~~iv~~LL~~ga~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll 284 (296)
|+|+||+|+..|+.+++++|+++|+++|.+|.+|+||||+|+..|+.+++++||
T Consensus 1 g~t~lh~A~~~g~~~~~~~Ll~~~~din~~d~~g~t~lh~A~~~g~~~~~~~Ll 54 (54)
T PF13637_consen 1 GRTPLHWAARSGNLEIVKLLLEHGADINAQDEDGRTPLHYAAKNGNIDIVKFLL 54 (54)
T ss_dssp SSBHHHHHHHTT-HHHHHHHHHTTSGTT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred CChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence 445555555555555555555555555555555555555555555555555553
No 77
>PTZ00303 phosphatidylinositol kinase; Provisional
Probab=99.54 E-value=2.7e-15 Score=141.05 Aligned_cols=67 Identities=25% Similarity=0.526 Sum_probs=53.2
Q ss_pred CCCCCCCcc-cccccccccccccc-----ccccccccccceEcCCCCCCceecC-----CCC---CCCceeccccchhhh
Q 022481 2 SIEPPAFQE-ATRCDVCKCSFNTF-----RRRHHCRCCGRTLCHEHSSDQMTLP-----QFG---IHTNVRVCADCFNSS 67 (296)
Q Consensus 2 ~~~w~~~~~-~~~C~~C~~~f~~~-----~r~hhCr~Cg~~~C~~c~~~~~~~~-----~~~---~~~~~rvC~~C~~~~ 67 (296)
...|++|++ ++.|+.|+++|+++ .||||||+||++||..||+++..++ ..+ ...+.|||+.||+.+
T Consensus 450 APvWqpDDEaSdtC~~C~kkFfSlsK~L~~RKHHCRkCGrVFC~~CSSnRs~yp~aKLpKPgsseE~ppRRVCD~CYdq~ 529 (1374)
T PTZ00303 450 NPSWQKDDESSDSCPSCGRAFISLSRPLGTRAHHCRSCGIRLCVFCITKRAHYSFAKLAKPGSSDEAEERLVCDTCYKEY 529 (1374)
T ss_pred CCCCCCCcccCCcccCcCCcccccccccccccccccCCccccCccccCCcccCcccccCCCCCcccccccchhHHHHHHH
Confidence 357999998 48899999999865 5999999999999999999876432 222 123678999999665
Q ss_pred c
Q 022481 68 S 68 (296)
Q Consensus 68 ~ 68 (296)
.
T Consensus 530 E 530 (1374)
T PTZ00303 530 E 530 (1374)
T ss_pred H
Confidence 4
No 78
>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A ....
Probab=99.53 E-value=1.9e-14 Score=94.79 Aligned_cols=54 Identities=35% Similarity=0.407 Sum_probs=45.9
Q ss_pred ChHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHH
Q 022481 198 NGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILM 251 (296)
Q Consensus 198 ~~t~Lh~A~~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~iv~~LL 251 (296)
|.|+||+|+..|+.+++++|+++|+++|.+|.+|+||||+|+.+|+.+++++||
T Consensus 1 g~t~lh~A~~~g~~~~~~~Ll~~~~din~~d~~g~t~lh~A~~~g~~~~~~~Ll 54 (54)
T PF13637_consen 1 GRTPLHWAARSGNLEIVKLLLEHGADINAQDEDGRTPLHYAAKNGNIDIVKFLL 54 (54)
T ss_dssp SSBHHHHHHHTT-HHHHHHHHHTTSGTT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred CChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence 456999999999999999999999999999999999999999999999999997
No 79
>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]
Probab=99.53 E-value=3.3e-14 Score=119.92 Aligned_cols=112 Identities=26% Similarity=0.328 Sum_probs=94.3
Q ss_pred CCCcCcccccCCCCCCCCCCCCCccccccChHHHHHHHHcCC-----HHHHHHHHHcCC---CCcccCCCCCcHHHHHHH
Q 022481 169 TSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGD-----AAAVKKLLSEGV---DANFCDKQGMSLLHLAAL 240 (296)
Q Consensus 169 ~~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~-----~~~v~~Ll~~ga---dvn~~d~~g~TpLh~A~~ 240 (296)
+....+..++..|.+++..+..+.+ +||+|+..++ .+++++||+.|+ +.+.+|..|+||||+|+.
T Consensus 84 ~~~~~~~~l~~~~~~~~~~~~~g~t-------~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~g~tpl~~A~~ 156 (235)
T COG0666 84 GDDKIVKLLLASGADVNAKDADGDT-------PLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDGNTPLHWAAL 156 (235)
T ss_pred CcHHHHHHHHHcCCCcccccCCCCc-------HHHHHHhcCCcccchHHHHHHHHHcCCCCCCccccCCCCCchhHHHHH
Confidence 3444456888888888888877776 8999999988 899999999888 555568889999999999
Q ss_pred cCCHHHHHHHHHCCCCCCccCCCCCCHhhHhhhcCcHHHHHHHHHcC
Q 022481 241 FNRTDIAFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDK 287 (296)
Q Consensus 241 ~g~~~iv~~LL~~ga~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~g 287 (296)
.|+.+++++|++.|++++..+..|.|+|++|+..++.+++..|++.+
T Consensus 157 ~~~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~ 203 (235)
T COG0666 157 NGDADIVELLLEAGADPNSRNSYGVTALDPAAKNGRIELVKLLLDKG 203 (235)
T ss_pred cCchHHHHHHHhcCCCCcccccCCCcchhhhcccchHHHHHHHHhcC
Confidence 99999999999999999988888999999999999999988888864
No 80
>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]
Probab=99.52 E-value=8.7e-14 Score=117.38 Aligned_cols=96 Identities=31% Similarity=0.415 Sum_probs=90.9
Q ss_pred hHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCC-----HHHHHHHHHCCC---CCCccCCCCCCHhhH
Q 022481 199 GEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNR-----TDIAFILMESGA---NMDCKNAQGESPLDC 270 (296)
Q Consensus 199 ~t~Lh~A~~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~-----~~iv~~LL~~ga---~~~~~d~~g~TpL~~ 270 (296)
.+++|+++..+..+++++|+..|++++.+|..|.||||+|+..++ .+++++||++|+ +.+.+|..|+||||+
T Consensus 74 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~g~tpl~~ 153 (235)
T COG0666 74 RLPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDGNTPLHW 153 (235)
T ss_pred cCHHHHHHHcCcHHHHHHHHHcCCCcccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCccccCCCCCchhHH
Confidence 349999999999999999999999999999999999999999999 999999999999 666779999999999
Q ss_pred hhhcCcHHHHHHHHHcCCCCCCCC
Q 022481 271 APVTLQYKMRQKMEEDKNNVGSTT 294 (296)
Q Consensus 271 A~~~g~~~iv~~Ll~~gadi~~~n 294 (296)
|+..|+.+++++|++.|++++..|
T Consensus 154 A~~~~~~~~~~~ll~~~~~~~~~~ 177 (235)
T COG0666 154 AALNGDADIVELLLEAGADPNSRN 177 (235)
T ss_pred HHHcCchHHHHHHHhcCCCCcccc
Confidence 999999999999999999998764
No 81
>KOG4214 consensus Myotrophin and similar proteins [Transcription]
Probab=99.52 E-value=1.6e-14 Score=102.50 Aligned_cols=92 Identities=21% Similarity=0.238 Sum_probs=78.0
Q ss_pred cCcccccCCCCCCCCCCCCCccccccChHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHH
Q 022481 172 SNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILM 251 (296)
Q Consensus 172 ~~~~~ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~iv~~LL 251 (296)
+.++..+..|.++|... .|.+|||||+..|.++++++|+..|++++.+|++|.|||.-|+..||.++|++||
T Consensus 16 DeVk~~v~~g~nVn~~~--------ggR~plhyAAD~GQl~ilefli~iGA~i~~kDKygITPLLsAvwEGH~~cVklLL 87 (117)
T KOG4214|consen 16 DEVKQSVNEGLNVNEIY--------GGRTPLHYAADYGQLSILEFLISIGANIQDKDKYGITPLLSAVWEGHRDCVKLLL 87 (117)
T ss_pred HHHHHHHHccccHHHHh--------CCcccchHhhhcchHHHHHHHHHhccccCCccccCCcHHHHHHHHhhHHHHHHHH
Confidence 34555555665555433 3445999999999999999999999999999999999999999999999999999
Q ss_pred HCCCCCCccCCCCCCHhhHh
Q 022481 252 ESGANMDCKNAQGESPLDCA 271 (296)
Q Consensus 252 ~~ga~~~~~d~~g~TpL~~A 271 (296)
++||+-..+.-+|.+.+..+
T Consensus 88 ~~GAdrt~~~PdG~~~~eat 107 (117)
T KOG4214|consen 88 QNGADRTIHAPDGTALIEAT 107 (117)
T ss_pred HcCcccceeCCCchhHHhhc
Confidence 99999999988898776644
No 82
>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]
Probab=99.52 E-value=1.2e-14 Score=137.12 Aligned_cols=120 Identities=21% Similarity=0.142 Sum_probs=105.8
Q ss_pred ccccCCCCCCCCcCcccccCCCCCCCCCCCCCccccccChHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHH
Q 022481 160 ENTARSRGSTSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAA 239 (296)
Q Consensus 160 ~~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~ 239 (296)
+.+..+.-.+...++++|++..+..+..+..+.. |||+|++.|+.++++.||.++..+|..+..|.||||+|+
T Consensus 51 Talhha~Lng~~~is~llle~ea~ldl~d~kg~~-------plhlaaw~g~~e~vkmll~q~d~~na~~~e~~tplhlaa 123 (854)
T KOG0507|consen 51 TLLHHAVLNGQNQISKLLLDYEALLDLCDTKGIL-------PLHLAAWNGNLEIVKMLLLQTDILNAVNIENETPLHLAA 123 (854)
T ss_pred hHHHHHHhcCchHHHHHHhcchhhhhhhhccCcc-------eEEehhhcCcchHHHHHHhcccCCCcccccCcCccchhh
Confidence 3344445567788889999998888888866665 999999999999999999999889999999999999999
Q ss_pred HcCCHHHHHHHHHCCCCCCccCCCCCCHhhHhhhcCcHHHHHHHHHc
Q 022481 240 LFNRTDIAFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEED 286 (296)
Q Consensus 240 ~~g~~~iv~~LL~~ga~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ 286 (296)
+.||.+++.+||.+|+|.-.+|+.+.|+|.+|++.|..++|++|++.
T Consensus 124 qhgh~dvv~~Ll~~~adp~i~nns~~t~ldlA~qfgr~~Vvq~ll~~ 170 (854)
T KOG0507|consen 124 QHGHLEVVFYLLKKNADPFIRNNSKETVLDLASRFGRAEVVQMLLQK 170 (854)
T ss_pred hhcchHHHHHHHhcCCCccccCcccccHHHHHHHhhhhHHHHHHhhh
Confidence 99999999999999999999999999999999999999999999987
No 83
>TIGR00870 trp transient-receptor-potential calcium channel protein. after chronic exposure to capsaicin. (McCleskey and Gold, 1999).
Probab=99.51 E-value=3.2e-14 Score=141.99 Aligned_cols=129 Identities=23% Similarity=0.219 Sum_probs=100.1
Q ss_pred ccccCCCCCCCCcCcccccCC--CCCCCCCCCCCccccccChHHHH-HHHHcCCHHHHHHHHHcCCC-------------
Q 022481 160 ENTARSRGSTSNSNFSSIFNP--GQVTNGATDKPRMEYEVNGEGLR-DAIKNGDAAAVKKLLSEGVD------------- 223 (296)
Q Consensus 160 ~~~~~~~~~~~~~~~~~ll~~--g~~~~~~~~~~~~~~~~~~t~Lh-~A~~~g~~~~v~~Ll~~gad------------- 223 (296)
.....++..++...++.+++. +.++|..|..+.+ ||| .|+.+++.+++++|+++|+.
T Consensus 19 ~~~l~A~~~g~~~~v~~lL~~~~~~~in~~d~~G~t-------~Lh~~A~~~~~~eiv~lLl~~g~~~~~G~T~Lh~A~~ 91 (743)
T TIGR00870 19 KAFLPAAERGDLASVYRDLEEPKKLNINCPDRLGRS-------ALFVAAIENENLELTELLLNLSCRGAVGDTLLHAISL 91 (743)
T ss_pred HHHHHHHHcCCHHHHHHHhccccccCCCCcCccchh-------HHHHHHHhcChHHHHHHHHhCCCCCCcChHHHHHHHh
Confidence 334455666777778888877 6777766665555 888 77777777888887777630
Q ss_pred -------------------------Ccc----cCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCccC-------------
Q 022481 224 -------------------------ANF----CDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN------------- 261 (296)
Q Consensus 224 -------------------------vn~----~d~~g~TpLh~A~~~g~~~iv~~LL~~ga~~~~~d------------- 261 (296)
++. .+..|.||||+|+.+|+.+++++||++||+++.++
T Consensus 92 ~~~~~v~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~~~~~~~~~~~~~~ 171 (743)
T TIGR00870 92 EYVDAVEAILLHLLAAFRKSGPLELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGASVPARACGDFFVKSQGVDS 171 (743)
T ss_pred ccHHHHHHHHHHHhhcccccCchhhhccccccccCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCcCCchhhcCCCCCc
Confidence 000 11358999999999999999999999999999753
Q ss_pred -CCCCCHhhHhhhcCcHHHHHHHHHcCCCCCCCCC
Q 022481 262 -AQGESPLDCAPVTLQYKMRQKMEEDKNNVGSTTS 295 (296)
Q Consensus 262 -~~g~TpL~~A~~~g~~~iv~~Ll~~gadi~~~n~ 295 (296)
..|.||||+|+..|+.+++++|+++|+|++.+|+
T Consensus 172 ~~~g~tpL~~Aa~~~~~~iv~lLl~~gadin~~d~ 206 (743)
T TIGR00870 172 FYHGESPLNAAACLGSPSIVALLSEDPADILTADS 206 (743)
T ss_pred ccccccHHHHHHHhCCHHHHHHHhcCCcchhhHhh
Confidence 3589999999999999999999999999998775
No 84
>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]
Probab=99.49 E-value=5.2e-14 Score=132.82 Aligned_cols=99 Identities=22% Similarity=0.238 Sum_probs=94.7
Q ss_pred cChHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHhhHhhhcCc
Q 022481 197 VNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCAPVTLQ 276 (296)
Q Consensus 197 ~~~t~Lh~A~~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~iv~~LL~~ga~~~~~d~~g~TpL~~A~~~g~ 276 (296)
.|-|+||.|+.+|+..++++|+++.+-++..|..|.+|||+|++.|+.+++++||.++..+|+.+..|.||||.|+.+|+
T Consensus 48 ~gfTalhha~Lng~~~is~llle~ea~ldl~d~kg~~plhlaaw~g~~e~vkmll~q~d~~na~~~e~~tplhlaaqhgh 127 (854)
T KOG0507|consen 48 SGFTLLHHAVLNGQNQISKLLLDYEALLDLCDTKGILPLHLAAWNGNLEIVKMLLLQTDILNAVNIENETPLHLAAQHGH 127 (854)
T ss_pred cchhHHHHHHhcCchHHHHHHhcchhhhhhhhccCcceEEehhhcCcchHHHHHHhcccCCCcccccCcCccchhhhhcc
Confidence 34569999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCCCCCC
Q 022481 277 YKMRQKMEEDKNNVGSTTS 295 (296)
Q Consensus 277 ~~iv~~Ll~~gadi~~~n~ 295 (296)
++++.+|+.+|+|.-++|+
T Consensus 128 ~dvv~~Ll~~~adp~i~nn 146 (854)
T KOG0507|consen 128 LEVVFYLLKKNADPFIRNN 146 (854)
T ss_pred hHHHHHHHhcCCCccccCc
Confidence 9999999999999988875
No 85
>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.
Probab=99.49 E-value=1.9e-13 Score=104.51 Aligned_cols=110 Identities=28% Similarity=0.384 Sum_probs=99.9
Q ss_pred CCCCcCcccccCCCCCCCCCCCCCccccccChHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHH
Q 022481 168 STSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIA 247 (296)
Q Consensus 168 ~~~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~iv 247 (296)
.+....+..|+..+...+..+..+.+ +||+|+..++.+++++|++.|++++..+..|.||+|+|+..++.+++
T Consensus 17 ~~~~~~i~~li~~~~~~~~~~~~g~~-------~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~ 89 (126)
T cd00204 17 NGHLEVVKLLLENGADVNAKDNDGRT-------PLHLAAKNGHLEIVKLLLEKGADVNARDKDGNTPLHLAARNGNLDVV 89 (126)
T ss_pred cCcHHHHHHHHHcCCCCCccCCCCCc-------HHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCcHHHH
Confidence 34456788888888887666666665 99999999999999999999999999999999999999999999999
Q ss_pred HHHHHCCCCCCccCCCCCCHhhHhhhcCcHHHHHHHH
Q 022481 248 FILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKME 284 (296)
Q Consensus 248 ~~LL~~ga~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll 284 (296)
++|+++|.+++..|..|.|||++|...++.+++++|+
T Consensus 90 ~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~Ll 126 (126)
T cd00204 90 KLLLKHGADVNARDKDGRTPLHLAAKNGHLEVVKLLL 126 (126)
T ss_pred HHHHHcCCCCcccCCCCCCHHHHHHhcCCHHHHHHhC
Confidence 9999999999999999999999999999999999885
No 86
>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]
Probab=99.48 E-value=1.2e-13 Score=117.26 Aligned_cols=111 Identities=20% Similarity=0.187 Sum_probs=82.1
Q ss_pred CCCcCcccccCCCCCCCCCCCCCccccccChHHHHHHHHcCCHHHHHHHHHcCCCCccc-CCCCCcHHHHHHHcCCHHHH
Q 022481 169 TSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFC-DKQGMSLLHLAALFNRTDIA 247 (296)
Q Consensus 169 ~~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~gadvn~~-d~~g~TpLh~A~~~g~~~iv 247 (296)
++......||..-..+|..|+.|.+ +|..|++.|+.++|++||+.|+|||.. +..++||||+|+..|+.++.
T Consensus 23 ndt~~a~~LLs~vr~vn~~D~sGMs-------~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTpLmFAALSGn~dvc 95 (396)
T KOG1710|consen 23 NDTEAALALLSTVRQVNQRDPSGMS-------VLAHAAYKGNLTLVELLLELGADVNDKQHGTLYTPLMFAALSGNQDVC 95 (396)
T ss_pred CcHHHHHHHHHHhhhhhccCCCccc-------HHHHHHhcCcHHHHHHHHHhCCCcCcccccccccHHHHHHHcCCchHH
Confidence 3334444555555556666666665 888888888888888888888888753 45578888888888888888
Q ss_pred HHHHHCCCCCCccCCCCCCHhhHhhhcCcHHHHHHHHHc
Q 022481 248 FILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEED 286 (296)
Q Consensus 248 ~~LL~~ga~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ 286 (296)
++||+.|+.+...|.-|+|+-++|+.-|+.++|.++-.+
T Consensus 96 rllldaGa~~~~vNsvgrTAaqmAAFVG~H~CV~iINN~ 134 (396)
T KOG1710|consen 96 RLLLDAGARMYLVNSVGRTAAQMAAFVGHHECVAIINNH 134 (396)
T ss_pred HHHHhccCccccccchhhhHHHHHHHhcchHHHHHHhcc
Confidence 888888888888888888888888888888888765443
No 87
>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=99.48 E-value=8.7e-14 Score=132.60 Aligned_cols=102 Identities=26% Similarity=0.271 Sum_probs=92.6
Q ss_pred ccccChHHHHHHHHcCCHHHHHHHHHcCCCCccc---------C--------------CCCCcHHHHHHHcCCHHHHHHH
Q 022481 194 EYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFC---------D--------------KQGMSLLHLAALFNRTDIAFIL 250 (296)
Q Consensus 194 ~~~~~~t~Lh~A~~~g~~~~v~~Ll~~gadvn~~---------d--------------~~g~TpLh~A~~~g~~~iv~~L 250 (296)
++-.|+|+||.|+.+.+.++|++||+.||||+++ | ..|..||-+||-.++.+++++|
T Consensus 180 eeY~GqSaLHiAIv~~~~~~V~lLl~~gADV~aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlL 259 (782)
T KOG3676|consen 180 EEYYGQSALHIAIVNRDAELVRLLLAAGADVHARACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLL 259 (782)
T ss_pred HhhcCcchHHHHHHhccHHHHHHHHHcCCchhhHhhccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHH
Confidence 3346889999999999999999999999999985 1 2478999999999999999999
Q ss_pred HHCCCCCCccCCCCCCHhhHhhhcCcHHHHHHHHHcCCC--CCCCCC
Q 022481 251 MESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKNN--VGSTTS 295 (296)
Q Consensus 251 L~~ga~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad--i~~~n~ 295 (296)
+++|||++++|.+|+|.||..+..-..+|-.++|++|++ ..++|+
T Consensus 260 l~~gAd~~aqDS~GNTVLH~lVi~~~~~My~~~L~~ga~~l~~v~N~ 306 (782)
T KOG3676|consen 260 LAHGADPNAQDSNGNTVLHMLVIHFVTEMYDLALELGANALEHVRNN 306 (782)
T ss_pred HhcCCCCCccccCCChHHHHHHHHHHHHHHHHHHhcCCCcccccccc
Confidence 999999999999999999999999999999999999999 666654
No 88
>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]
Probab=99.46 E-value=8.5e-14 Score=118.14 Aligned_cols=97 Identities=27% Similarity=0.258 Sum_probs=90.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCcc-CCCCCCHhhHhhhcCcHH
Q 022481 200 EGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCK-NAQGESPLDCAPVTLQYK 278 (296)
Q Consensus 200 t~Lh~A~~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~iv~~LL~~ga~~~~~-d~~g~TpL~~A~~~g~~~ 278 (296)
.+|..++..|+.+....||..--++|.+|..|+|+|..|+..|+.+++++||++|||+|.. +..++||||+|+..|+.+
T Consensus 14 ~~Lle~i~Kndt~~a~~LLs~vr~vn~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTpLmFAALSGn~d 93 (396)
T KOG1710|consen 14 SPLLEAIDKNDTEAALALLSTVRQVNQRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLYTPLMFAALSGNQD 93 (396)
T ss_pred hHHHHHHccCcHHHHHHHHHHhhhhhccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcccccccccHHHHHHHcCCch
Confidence 3899999999999999999876679999999999999999999999999999999999975 556999999999999999
Q ss_pred HHHHHHHcCCCCCCCCCC
Q 022481 279 MRQKMEEDKNNVGSTTSV 296 (296)
Q Consensus 279 iv~~Ll~~gadi~~~n~l 296 (296)
+.++||+.||.+...|++
T Consensus 94 vcrllldaGa~~~~vNsv 111 (396)
T KOG1710|consen 94 VCRLLLDAGARMYLVNSV 111 (396)
T ss_pred HHHHHHhccCccccccch
Confidence 999999999999888864
No 89
>TIGR00870 trp transient-receptor-potential calcium channel protein. after chronic exposure to capsaicin. (McCleskey and Gold, 1999).
Probab=99.45 E-value=1.4e-13 Score=137.31 Aligned_cols=95 Identities=20% Similarity=0.140 Sum_probs=83.6
Q ss_pred ccChHHHHHHHHcCCHHHHHHHHHcCCCCcccC--------------CCCCcHHHHHHHcCCHHHHHHHHHCCCCCCccC
Q 022481 196 EVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCD--------------KQGMSLLHLAALFNRTDIAFILMESGANMDCKN 261 (296)
Q Consensus 196 ~~~~t~Lh~A~~~g~~~~v~~Ll~~gadvn~~d--------------~~g~TpLh~A~~~g~~~iv~~LL~~ga~~~~~d 261 (296)
..|.||||+|+..|+.++|++||++|++++.++ ..|.||||+|+..|+.+++++|+++|+|++.+|
T Consensus 126 ~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~~~~~~~~~~~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~gadin~~d 205 (743)
T TIGR00870 126 TPGITALHLAAHRQNYEIVKLLLERGASVPARACGDFFVKSQGVDSFYHGESPLNAAACLGSPSIVALLSEDPADILTAD 205 (743)
T ss_pred CCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCcCCchhhcCCCCCcccccccHHHHHHHhCCHHHHHHHhcCCcchhhHh
Confidence 357789999999999999999999999999753 358999999999999999999999999999999
Q ss_pred CCCCCHhhHhhhcC---------cHHHHHHHHHcCCCC
Q 022481 262 AQGESPLDCAPVTL---------QYKMRQKMEEDKNNV 290 (296)
Q Consensus 262 ~~g~TpL~~A~~~g---------~~~iv~~Ll~~gadi 290 (296)
..|+||||+|+..+ ...+.+++++.+++.
T Consensus 206 ~~g~T~Lh~A~~~~~~~~~~~~l~~~~~~~l~~ll~~~ 243 (743)
T TIGR00870 206 SLGNTLLHLLVMENEFKAEYEELSCQMYNFALSLLDKL 243 (743)
T ss_pred hhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999886 234667777766654
No 90
>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]
Probab=99.41 E-value=1e-12 Score=119.61 Aligned_cols=94 Identities=24% Similarity=0.207 Sum_probs=83.0
Q ss_pred ccccccChHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCccC-CCCCCHhhH
Q 022481 192 RMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN-AQGESPLDC 270 (296)
Q Consensus 192 ~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~iv~~LL~~ga~~~~~d-~~g~TpL~~ 270 (296)
...++.|.|+||-|+..||.+||+|||+.|++||..|.+||||||+|+..+++.+++.|++.||-|.+.. .++.||..-
T Consensus 577 SqpNdEGITaLHNAiCaghyeIVkFLi~~ganVNa~DSdGWTPLHCAASCNnv~~ckqLVe~GaavfAsTlSDmeTa~eK 656 (752)
T KOG0515|consen 577 SQPNDEGITALHNAICAGHYEIVKFLIEFGANVNAADSDGWTPLHCAASCNNVPMCKQLVESGAAVFASTLSDMETAAEK 656 (752)
T ss_pred CCCCccchhHHhhhhhcchhHHHHHHHhcCCcccCccCCCCchhhhhhhcCchHHHHHHHhccceEEeeecccccchhhh
Confidence 3445677789999999999999999999999999999999999999999999999999999999988765 458888876
Q ss_pred hh--hcCcHHHHHHHHH
Q 022481 271 AP--VTLQYKMRQKMEE 285 (296)
Q Consensus 271 A~--~~g~~~iv~~Ll~ 285 (296)
+- ..|+..+.++|-.
T Consensus 657 Cee~eeGY~~CsqyL~~ 673 (752)
T KOG0515|consen 657 CEEMEEGYDQCSQYLYG 673 (752)
T ss_pred cchhhhhHHHHHHHHHH
Confidence 63 4788899998864
No 91
>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A.
Probab=99.35 E-value=1e-12 Score=87.10 Aligned_cols=55 Identities=31% Similarity=0.408 Sum_probs=32.5
Q ss_pred ccCCC-CCCCCCCCCCccccccChHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHH
Q 022481 177 IFNPG-QVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLA 238 (296)
Q Consensus 177 ll~~g-~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A 238 (296)
||+.| .+++..+..+.+ |||+|+..|+.++|++||+.|++++.+|..|+||||+|
T Consensus 1 LL~~~~~~~n~~d~~G~T-------~LH~A~~~g~~~~v~~Ll~~g~d~~~~d~~G~Tpl~~A 56 (56)
T PF13857_consen 1 LLEHGPADVNAQDKYGNT-------PLHWAARYGHSEVVRLLLQNGADPNAKDKDGQTPLHYA 56 (56)
T ss_dssp -----T--TT---TTS---------HHHHHHHHT-HHHHHHHHHCT--TT---TTS--HHHH-
T ss_pred CCccCcCCCcCcCCCCCc-------HHHHHHHcCcHHHHHHHHHCcCCCCCCcCCCCCHHHhC
Confidence 45666 777777777766 99999999999999999999999999999999999997
No 92
>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional
Probab=99.33 E-value=1.7e-12 Score=127.53 Aligned_cols=104 Identities=24% Similarity=0.243 Sum_probs=93.2
Q ss_pred ccCCCCCCCCcCcccccCCCCCCCCCCCCCccccccChHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHc
Q 022481 162 TARSRGSTSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALF 241 (296)
Q Consensus 162 ~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~ 241 (296)
...++..+....++.|+..|+++|..+..+.+ |||+|+..|+.+++++||++|+++|.+|..|.||||+|+..
T Consensus 86 L~~aa~~G~~~~vk~LL~~Gadin~~d~~G~T-------pLh~Aa~~g~~eiv~~LL~~Gadvn~~d~~G~TpLh~A~~~ 158 (664)
T PTZ00322 86 LCQLAASGDAVGARILLTGGADPNCRDYDGRT-------PLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEEN 158 (664)
T ss_pred HHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCc-------HHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHC
Confidence 33455667788899999999999988877666 99999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHC-------CCCCCccCCCCCCHhhHhh
Q 022481 242 NRTDIAFILMES-------GANMDCKNAQGESPLDCAP 272 (296)
Q Consensus 242 g~~~iv~~LL~~-------ga~~~~~d~~g~TpL~~A~ 272 (296)
|+.+++++|+++ |++++..+..|.+|+..+.
T Consensus 159 g~~~iv~~Ll~~~~~~~~~ga~~~~~~~~g~~~~~~~~ 196 (664)
T PTZ00322 159 GFREVVQLLSRHSQCHFELGANAKPDSFTGKPPSLEDS 196 (664)
T ss_pred CcHHHHHHHHhCCCcccccCCCCCccccCCCCccchhh
Confidence 999999999999 9999999988888776554
No 93
>KOG1842 consensus FYVE finger-containing protein [General function prediction only]
Probab=99.33 E-value=8.5e-14 Score=124.02 Aligned_cols=67 Identities=31% Similarity=0.634 Sum_probs=54.9
Q ss_pred CCCCCCccccccccccccccccccccccccccceEcCCCCCCceecC-----------------C-----C-CCCCceec
Q 022481 3 IEPPAFQEATRCDVCKCSFNTFRRRHHCRCCGRTLCHEHSSDQMTLP-----------------Q-----F-GIHTNVRV 59 (296)
Q Consensus 3 ~~w~~~~~~~~C~~C~~~f~~~~r~hhCr~Cg~~~C~~c~~~~~~~~-----------------~-----~-~~~~~~rv 59 (296)
|+|..|.++..|..|..+|++.+||||||.||+|+|.+|+.+- +++ . . ....++|+
T Consensus 172 VpW~DDs~V~~CP~Ca~~F~l~rRrHHCRLCG~VmC~~C~k~i-Sle~a~~ltsss~~dt~~e~~qq~~~lH~~~~~iRl 250 (505)
T KOG1842|consen 172 VPWLDDSSVQFCPECANSFGLTRRRHHCRLCGRVMCRDCSKFI-SLEIAIGLTSSSASDTHFEPNQQKDDLHQHPQPIRL 250 (505)
T ss_pred ccccCCCcccccccccchhhhHHHhhhhhhcchHHHHHHHHhc-ChHHHHHHhhccCCCCCcCcccCcccccCChhHhHH
Confidence 7899999999999999999999999999999999999998652 210 0 0 01346899
Q ss_pred cccchhhhccc
Q 022481 60 CADCFNSSSRT 70 (296)
Q Consensus 60 C~~C~~~~~~~ 70 (296)
|..|...+..+
T Consensus 251 C~hCl~~L~~R 261 (505)
T KOG1842|consen 251 CMHCLDNLFRR 261 (505)
T ss_pred HHHHHHHHHHH
Confidence 99999887653
No 94
>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=99.32 E-value=2e-12 Score=123.50 Aligned_cols=118 Identities=24% Similarity=0.264 Sum_probs=103.8
Q ss_pred CCCcCcccccCCCCCCCCCCCC-------C-----cccc----ccChHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCC
Q 022481 169 TSNSNFSSIFNPGQVTNGATDK-------P-----RMEY----EVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGM 232 (296)
Q Consensus 169 ~~~~~~~~ll~~g~~~~~~~~~-------~-----~~~~----~~~~t~Lh~A~~~g~~~~v~~Ll~~gadvn~~d~~g~ 232 (296)
.+...+++|+..|++++.+-.- . .+.| --|..||-+||-.+..+++++|+++|||++.+|..|+
T Consensus 195 ~~~~~V~lLl~~gADV~aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl~~gAd~~aqDS~GN 274 (782)
T KOG3676|consen 195 RDAELVRLLLAAGADVHARACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLLAHGADPNAQDSNGN 274 (782)
T ss_pred ccHHHHHHHHHcCCchhhHhhccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHHhcCCCCCccccCCC
Confidence 4667789999999998764321 1 1111 1356799999999999999999999999999999999
Q ss_pred cHHHHHHHcCCHHHHHHHHHCCCC--CCccCCCCCCHhhHhhhcCcHHHHHHHHHc
Q 022481 233 SLLHLAALFNRTDIAFILMESGAN--MDCKNAQGESPLDCAPVTLQYKMRQKMEED 286 (296)
Q Consensus 233 TpLh~A~~~g~~~iv~~LL~~ga~--~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ 286 (296)
|.||..+..-..++..++|++|++ ...+|+.|.|||.+|+..|+.+|.+.+++.
T Consensus 275 TVLH~lVi~~~~~My~~~L~~ga~~l~~v~N~qgLTPLtLAaklGk~emf~~ile~ 330 (782)
T KOG3676|consen 275 TVLHMLVIHFVTEMYDLALELGANALEHVRNNQGLTPLTLAAKLGKKEMFQHILER 330 (782)
T ss_pred hHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCChHHHHHHhhhHHHHHHHHHh
Confidence 999999999999999999999999 999999999999999999999999999997
No 95
>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]
Probab=99.19 E-value=1e-11 Score=121.38 Aligned_cols=128 Identities=21% Similarity=0.224 Sum_probs=113.9
Q ss_pred ccccCCCCCCCCcCcccccCCCCCCCCCCCCCccccccChHHHHHHHHcCCHHHHHHHHHcCCCCccc-CCCCCcHHHHH
Q 022481 160 ENTARSRGSTSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFC-DKQGMSLLHLA 238 (296)
Q Consensus 160 ~~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~gadvn~~-d~~g~TpLh~A 238 (296)
.++..+-..+..+++.+|+..|+++..++..+-. +|.+|+-.||..+|+.||++-++++.+ |+.+.|+|.+|
T Consensus 759 t~LT~acaggh~e~vellv~rganiehrdkkgf~-------plImaatagh~tvV~~llk~ha~veaQsdrtkdt~lSla 831 (2131)
T KOG4369|consen 759 TNLTSACAGGHREEVELLVVRGANIEHRDKKGFV-------PLIMAATAGHITVVQDLLKAHADVEAQSDRTKDTMLSLA 831 (2131)
T ss_pred ccccccccCccHHHHHHHHHhcccccccccccch-------hhhhhcccCchHHHHHHHhhhhhhhhhcccccCceEEEe
Confidence 3344444556677789999999999999988887 999999999999999999999999875 67799999999
Q ss_pred HHcCCHHHHHHHHHCCCCCCccCCCCCCHhhHhhhcCcHHHHHHHHHcCCCCCCCC
Q 022481 239 ALFNRTDIAFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKNNVGSTT 294 (296)
Q Consensus 239 ~~~g~~~iv~~LL~~ga~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gadi~~~n 294 (296)
+-.|++++|++||.+|++-..++-..+|||.+|...|+.+||++||.+|+.||.+.
T Consensus 832 csggr~~vvelLl~~gankehrnvsDytPlsla~Sggy~~iI~~llS~GseInSrt 887 (2131)
T KOG4369|consen 832 CSGGRTRVVELLLNAGANKEHRNVSDYTPLSLARSGGYTKIIHALLSSGSEINSRT 887 (2131)
T ss_pred cCCCcchHHHHHHHhhccccccchhhcCchhhhcCcchHHHHHHHhhccccccccc
Confidence 99999999999999999999999999999999999999999999999999998764
No 96
>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]
Probab=99.14 E-value=6.1e-11 Score=106.89 Aligned_cols=90 Identities=26% Similarity=0.316 Sum_probs=85.2
Q ss_pred hHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHC-CCCCCccCCCCCCHhhHhhhcCcH
Q 022481 199 GEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMES-GANMDCKNAQGESPLDCAPVTLQY 277 (296)
Q Consensus 199 ~t~Lh~A~~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~iv~~LL~~-ga~~~~~d~~g~TpL~~A~~~g~~ 277 (296)
.-.+++|++.|++..++.+.-.|.|++.+|.+.+|+||.|+..|+.+++++||+. +.+++.+|.+|+|||+-|...++.
T Consensus 507 ~i~~~~aa~~GD~~alrRf~l~g~D~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~rtPlDdA~~F~h~ 586 (622)
T KOG0506|consen 507 VINVMYAAKNGDLSALRRFALQGMDLETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGRTPLDDAKHFKHK 586 (622)
T ss_pred hhhhhhhhhcCCHHHHHHHHHhcccccccccccchhheeecccCceeHHHHHHHHHcCCCChhhccCCCcchHhHhcCcH
Confidence 3479999999999999999999999999999999999999999999999999988 999999999999999999999999
Q ss_pred HHHHHHHHcCC
Q 022481 278 KMRQKMEEDKN 288 (296)
Q Consensus 278 ~iv~~Ll~~ga 288 (296)
+++++|.+.-.
T Consensus 587 ~v~k~L~~~~~ 597 (622)
T KOG0506|consen 587 EVVKLLEEAQY 597 (622)
T ss_pred HHHHHHHHHhc
Confidence 99999988643
No 97
>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]
Probab=99.13 E-value=2.2e-10 Score=103.74 Aligned_cols=86 Identities=27% Similarity=0.378 Sum_probs=81.1
Q ss_pred HHHHHHHcCCHHHHHHHHHcCCCCcccCC-CCCcHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHhhHhhhcCcHHH
Q 022481 201 GLRDAIKNGDAAAVKKLLSEGVDANFCDK-QGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCAPVTLQYKM 279 (296)
Q Consensus 201 ~Lh~A~~~g~~~~v~~Ll~~gadvn~~d~-~g~TpLh~A~~~g~~~iv~~LL~~ga~~~~~d~~g~TpL~~A~~~g~~~i 279 (296)
-||..++.|+++..-.||..|+++|..+. .|.||||.|+..|+..-+++|+-+|||+++.|.+|.||+.+|-..|+.++
T Consensus 136 QLhasvRt~nlet~LRll~lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~~a~d~~GmtP~~~AR~~gH~~l 215 (669)
T KOG0818|consen 136 QLHSSVRTGNLETCLRLLSLGAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYGADPGAQDSSGMTPVDYARQGGHHEL 215 (669)
T ss_pred HHHHHhhcccHHHHHHHHHcccccCCCCcccCCchhHHHHhccchhhhhHHhhccCCCCCCCCCCCcHHHHHHhcCchHH
Confidence 69999999999999999999999999885 59999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHc
Q 022481 280 RQKMEED 286 (296)
Q Consensus 280 v~~Ll~~ 286 (296)
.+-|++.
T Consensus 216 aeRl~e~ 222 (669)
T KOG0818|consen 216 AERLVEI 222 (669)
T ss_pred HHHHHHH
Confidence 8887764
No 98
>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]
Probab=99.12 E-value=2.7e-11 Score=118.49 Aligned_cols=124 Identities=21% Similarity=0.244 Sum_probs=91.9
Q ss_pred CCCCCCCcCcccccCCCCCCCCCCCCCccccccChHHHHHHHHcCCHHHHHHHHHcCCCCcccC-CCCCcHHHHHHHcCC
Q 022481 165 SRGSTSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCD-KQGMSLLHLAALFNR 243 (296)
Q Consensus 165 ~~~~~~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~gadvn~~d-~~g~TpLh~A~~~g~ 243 (296)
.++.+...++..||..|..+|.+.... .|..||+.|..+|+.+.++.||+.|.|||..- .+.+|+|-+|...|+
T Consensus 864 a~Sggy~~iI~~llS~GseInSrtgSk-----lgisPLmlatmngh~~at~~ll~~gsdiNaqIeTNrnTaltla~fqgr 938 (2131)
T KOG4369|consen 864 ARSGGYTKIIHALLSSGSEINSRTGSK-----LGISPLMLATMNGHQAATLSLLQPGSDINAQIETNRNTALTLALFQGR 938 (2131)
T ss_pred hcCcchHHHHHHHhhcccccccccccc-----cCcchhhhhhhccccHHHHHHhcccchhccccccccccceeeccccCc
Confidence 344445555666666666665543222 12337888888888888888887777777653 346678888888888
Q ss_pred HHHHHHHHHCCCCCCccCCCCCCHhhHhhhcCcHHHHHHHHHcCCCCCCC
Q 022481 244 TDIAFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKNNVGST 293 (296)
Q Consensus 244 ~~iv~~LL~~ga~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gadi~~~ 293 (296)
.+++.+||.+.+++..+...|.|||+-++..|+.++-++||.+|||+|+.
T Consensus 939 ~evv~lLLa~~anvehRaktgltplme~AsgGyvdvg~~li~~gad~nas 988 (2131)
T KOG4369|consen 939 PEVVFLLLAAQANVEHRAKTGLTPLMEMASGGYVDVGNLLIAAGADTNAS 988 (2131)
T ss_pred chHHHHHHHHhhhhhhhcccCCcccchhhcCCccccchhhhhcccccccC
Confidence 88888888888888888889999999999999999999999999998863
No 99
>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]
Probab=99.08 E-value=1.4e-10 Score=106.54 Aligned_cols=104 Identities=21% Similarity=0.263 Sum_probs=90.8
Q ss_pred cccCCCCCCCCCCCCCccccccChHHHHHHHHcCCHHHHHHHHHcCCC--CcccCCCCCcHHHHHHHcCCHHHHHHHHHC
Q 022481 176 SIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVD--ANFCDKQGMSLLHLAALFNRTDIAFILMES 253 (296)
Q Consensus 176 ~ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~gad--vn~~d~~g~TpLh~A~~~g~~~iv~~LL~~ 253 (296)
.+...|+..-.++....+ .||+|+..|+-++|++||++|.. ++..|..|.|+||-|+..++..+.++|++.
T Consensus 884 E~h~~gg~ll~~~~~~~s-------llh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~~~r~vc~~lvda 956 (1004)
T KOG0782|consen 884 ETHLNGGSLLIQGPDHCS-------LLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQRNRAVCQLLVDA 956 (1004)
T ss_pred HHHhcCCceEeeCcchhh-------HHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhcchHHHHHHHhc
Confidence 334456666666655554 89999999999999999999853 677889999999999999999999999999
Q ss_pred CCCCCccCCCCCCHhhHhhhcCcHHHHHHHHHc
Q 022481 254 GANMDCKNAQGESPLDCAPVTLQYKMRQKMEED 286 (296)
Q Consensus 254 ga~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ 286 (296)
||.+-..|..|.||-..|-..|..++..+|..+
T Consensus 957 gasl~ktd~kg~tp~eraqqa~d~dlaayle~r 989 (1004)
T KOG0782|consen 957 GASLRKTDSKGKTPQERAQQAGDPDLAAYLESR 989 (1004)
T ss_pred chhheecccCCCChHHHHHhcCCchHHHHHhhh
Confidence 999999999999999999999999999998764
No 100
>KOG1841 consensus Smad anchor for receptor activation [Defense mechanisms]
Probab=99.04 E-value=1e-10 Score=114.68 Aligned_cols=61 Identities=30% Similarity=0.531 Sum_probs=49.6
Q ss_pred CCCCCCCccccccccccccccccccccccccccceEcCCCCCCceecCCCCCCCceeccccc
Q 022481 2 SIEPPAFQEATRCDVCKCSFNTFRRRHHCRCCGRTLCHEHSSDQMTLPQFGIHTNVRVCADC 63 (296)
Q Consensus 2 ~~~w~~~~~~~~C~~C~~~f~~~~r~hhCr~Cg~~~C~~c~~~~~~~~~~~~~~~~rvC~~C 63 (296)
.-.|.||.++..||.|..+|++++||||||.||+|+|..|+..+..+-... ...-|||..|
T Consensus 548 qP~wvpdse~pncm~clqkft~ikrrhhcRacgkVlcgvccnek~~leyl~-e~~~rv~nV~ 608 (1287)
T KOG1841|consen 548 QPSWVPDSEAPNCMDCLQKFTPIKRRHHCRACGKVLCGVCCNEKSALEYLS-ESEGRVSNVD 608 (1287)
T ss_pred CCccCccccCchHHHHHhhcccccccccchhccceeehhhcchhhhhhhcC-cccccccccc
Confidence 457999999999999999999999999999999999999999987764331 2333444433
No 101
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.01 E-value=8.7e-11 Score=102.17 Aligned_cols=91 Identities=26% Similarity=0.688 Sum_probs=74.3
Q ss_pred CCCCCCccccccccccccccc-c----------ccccccccccceEcCCCCCCceecCCCCCCCceeccccchhhhcccC
Q 022481 3 IEPPAFQEATRCDVCKCSFNT-F----------RRRHHCRCCGRTLCHEHSSDQMTLPQFGIHTNVRVCADCFNSSSRTG 71 (296)
Q Consensus 3 ~~w~~~~~~~~C~~C~~~f~~-~----------~r~hhCr~Cg~~~C~~c~~~~~~~~~~~~~~~~rvC~~C~~~~~~~~ 71 (296)
++-+.|.+...|..|.++|.. | .|.||||.||..||..|++++...|..|....+|+|+.||..+....
T Consensus 274 ~etpewl~s~~cQ~c~qpffwn~~~m~~~k~~glr~h~crkcg~avc~~c~s~~~~~p~mg~e~~vR~~~~c~~~i~~~~ 353 (404)
T KOG1409|consen 274 VETPEWLDSDSCQKCNQPFFWNFRQMWDRKQLGLRQHHCRKCGKAVCGKCSSNRSSYPTMGFEFSVRVCDSCYPTIKDEE 353 (404)
T ss_pred ecCccccccchhhhhCchHHHHHHHHHhhhhhhhhhhhhhhhhhhcCcccccCccccccccceeEEEEecccchhhhcCC
Confidence 445677788899999999862 1 38999999999999999999999999999999999999999998887
Q ss_pred CCCCCCCCCCcCCCccccccccCCCC
Q 022481 72 KDNLQVSSDGVNSVTDTFSRLDIDSD 97 (296)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (296)
+...+.+.+.... +..+++++.
T Consensus 354 ~t~LA~phei~tg----Itamhlqet 375 (404)
T KOG1409|consen 354 RTPLAIPHEIKTG----ITAMHLQET 375 (404)
T ss_pred CCccccccccccc----eeEEEhhhh
Confidence 7666666555444 566677654
No 102
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=98.99 E-value=1.9e-10 Score=109.85 Aligned_cols=83 Identities=27% Similarity=0.392 Sum_probs=76.6
Q ss_pred CCCCCCCCccccccChHHHHHHHHcCCHHHHHHHHHcCCCCcccCCC-CCcHHHHHHHcCCHHHHHHHHHCCCCCCccCC
Q 022481 184 TNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQ-GMSLLHLAALFNRTDIAFILMESGANMDCKNA 262 (296)
Q Consensus 184 ~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~gadvn~~d~~-g~TpLh~A~~~g~~~iv~~LL~~ga~~~~~d~ 262 (296)
.|..|..|++ +||+|+..+..+++++||++|+|++.+|.. |+||||-|+.+|+++++-+||.+|+.+.++|.
T Consensus 45 anikD~~GR~-------alH~~~S~~k~~~l~wLlqhGidv~vqD~ESG~taLHRaiyyG~idca~lLL~~g~SL~i~Dk 117 (1267)
T KOG0783|consen 45 ANIKDRYGRT-------ALHIAVSENKNSFLRWLLQHGIDVFVQDEESGYTALHRAIYYGNIDCASLLLSKGRSLRIKDK 117 (1267)
T ss_pred hhHHHhhccc-------eeeeeeccchhHHHHHHHhcCceeeeccccccchHhhHhhhhchHHHHHHHHhcCCceEEecc
Confidence 4566666666 999999999999999999999999999965 99999999999999999999999999999999
Q ss_pred CCCCHhhHhhh
Q 022481 263 QGESPLDCAPV 273 (296)
Q Consensus 263 ~g~TpL~~A~~ 273 (296)
+|..||++.++
T Consensus 118 eglsplq~~~r 128 (1267)
T KOG0783|consen 118 EGLSPLQFLSR 128 (1267)
T ss_pred cCCCHHHHHhh
Confidence 99999998776
No 103
>PF13606 Ank_3: Ankyrin repeat
Probab=98.99 E-value=6.7e-10 Score=63.43 Aligned_cols=28 Identities=39% Similarity=0.540 Sum_probs=14.1
Q ss_pred CCcHHHHHHHcCCHHHHHHHHHCCCCCC
Q 022481 231 GMSLLHLAALFNRTDIAFILMESGANMD 258 (296)
Q Consensus 231 g~TpLh~A~~~g~~~iv~~LL~~ga~~~ 258 (296)
|+||||+|+..|+.+++++||++|+|+|
T Consensus 2 G~T~Lh~A~~~g~~e~v~~Ll~~gadvn 29 (30)
T PF13606_consen 2 GNTPLHLAASNGNIEIVKYLLEHGADVN 29 (30)
T ss_pred CCCHHHHHHHhCCHHHHHHHHHcCCCCC
Confidence 4455555555555555555555555444
No 104
>PF13606 Ank_3: Ankyrin repeat
Probab=98.97 E-value=6.4e-10 Score=63.50 Aligned_cols=30 Identities=20% Similarity=0.321 Sum_probs=28.6
Q ss_pred CCCCHhhHhhhcCcHHHHHHHHHcCCCCCC
Q 022481 263 QGESPLDCAPVTLQYKMRQKMEEDKNNVGS 292 (296)
Q Consensus 263 ~g~TpL~~A~~~g~~~iv~~Ll~~gadi~~ 292 (296)
+|+||||+|+..|+.+++++|+++|+|+|+
T Consensus 1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gadvn~ 30 (30)
T PF13606_consen 1 NGNTPLHLAASNGNIEIVKYLLEHGADVNA 30 (30)
T ss_pred CCCCHHHHHHHhCCHHHHHHHHHcCCCCCC
Confidence 589999999999999999999999999985
No 105
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=98.95 E-value=2.3e-09 Score=98.87 Aligned_cols=89 Identities=22% Similarity=0.199 Sum_probs=79.9
Q ss_pred HHHHHHHcCCHHHHHHHHHcCCCC--cc--cCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHhhHhhhcCc
Q 022481 201 GLRDAIKNGDAAAVKKLLSEGVDA--NF--CDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCAPVTLQ 276 (296)
Q Consensus 201 ~Lh~A~~~g~~~~v~~Ll~~gadv--n~--~d~~g~TpLh~A~~~g~~~iv~~LL~~ga~~~~~d~~g~TpL~~A~~~g~ 276 (296)
-|..|+...++..+-+||.+|... |. -+.+|.|+||+|+..|+..+.++|+-+|+|+-++|.+|+|+|.||-..|.
T Consensus 627 qLl~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv~~rda~g~t~l~yar~a~s 706 (749)
T KOG0705|consen 627 QLLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVDVMARDAHGRTALFYARQAGS 706 (749)
T ss_pred HHHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhCccceecccCCchhhhhHhhccc
Confidence 577888888999999999998543 32 35678999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCC
Q 022481 277 YKMRQKMEEDKNN 289 (296)
Q Consensus 277 ~~iv~~Ll~~gad 289 (296)
.+++.+||++|.-
T Consensus 707 qec~d~llq~gcp 719 (749)
T KOG0705|consen 707 QECIDVLLQYGCP 719 (749)
T ss_pred HHHHHHHHHcCCC
Confidence 9999999999874
No 106
>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....
Probab=98.94 E-value=1.3e-09 Score=63.80 Aligned_cols=31 Identities=32% Similarity=0.561 Sum_probs=15.6
Q ss_pred CCcHHHHHHHcCCHHHHHHHHHCCCCCCccC
Q 022481 231 GMSLLHLAALFNRTDIAFILMESGANMDCKN 261 (296)
Q Consensus 231 g~TpLh~A~~~g~~~iv~~LL~~ga~~~~~d 261 (296)
|+||||+|+..|+.+++++||++|++++.+|
T Consensus 2 G~TpLh~A~~~~~~~~v~~Ll~~ga~~~~~d 32 (33)
T PF00023_consen 2 GNTPLHYAAQRGHPDIVKLLLKHGADINARD 32 (33)
T ss_dssp SBBHHHHHHHTTCHHHHHHHHHTTSCTTCBC
T ss_pred cccHHHHHHHHHHHHHHHHHHHCcCCCCCCC
Confidence 4455555555555555555555555554443
No 107
>KOG0522 consensus Ankyrin repeat protein [General function prediction only]
Probab=98.94 E-value=2e-09 Score=98.70 Aligned_cols=86 Identities=27% Similarity=0.302 Sum_probs=76.9
Q ss_pred HHHHHHHcCCHHHHHHHH--HcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHhhHhhhcCcHH
Q 022481 201 GLRDAIKNGDAAAVKKLL--SEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCAPVTLQYK 278 (296)
Q Consensus 201 ~Lh~A~~~g~~~~v~~Ll--~~gadvn~~d~~g~TpLh~A~~~g~~~iv~~LL~~ga~~~~~d~~g~TpL~~A~~~g~~~ 278 (296)
+||+++...+.+-+..++ +.+..++..|..|.||||+|+..|+...++.||.+||++..+|++|++|||.|+..|+..
T Consensus 23 ~lh~~~~~~~~~sl~~el~~~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv~~kN~~gWs~L~EAv~~g~~q 102 (560)
T KOG0522|consen 23 PLHWAVVTTDSDSLEQELLAKVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGADVSIKNNEGWSPLHEAVSTGNEQ 102 (560)
T ss_pred ccchhhhccchhhHHHHHhhhhhceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCCccccccccccHHHHHHHcCCHH
Confidence 699999998877665544 346778899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHc
Q 022481 279 MRQKMEED 286 (296)
Q Consensus 279 iv~~Ll~~ 286 (296)
++..+|.+
T Consensus 103 ~i~~vlr~ 110 (560)
T KOG0522|consen 103 IITEVLRH 110 (560)
T ss_pred HHHHHHHH
Confidence 88887765
No 108
>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....
Probab=98.93 E-value=1.2e-09 Score=64.05 Aligned_cols=33 Identities=12% Similarity=0.246 Sum_probs=31.5
Q ss_pred CCCCHhhHhhhcCcHHHHHHHHHcCCCCCCCCC
Q 022481 263 QGESPLDCAPVTLQYKMRQKMEEDKNNVGSTTS 295 (296)
Q Consensus 263 ~g~TpL~~A~~~g~~~iv~~Ll~~gadi~~~n~ 295 (296)
+|+||||+|+..|+.+++++|+++|++++++|+
T Consensus 1 dG~TpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~ 33 (33)
T PF00023_consen 1 DGNTPLHYAAQRGHPDIVKLLLKHGADINARDN 33 (33)
T ss_dssp TSBBHHHHHHHTTCHHHHHHHHHTTSCTTCBCT
T ss_pred CcccHHHHHHHHHHHHHHHHHHHCcCCCCCCCC
Confidence 589999999999999999999999999999985
No 109
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=98.86 E-value=7.5e-10 Score=105.88 Aligned_cols=72 Identities=18% Similarity=0.201 Sum_probs=68.0
Q ss_pred CcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCccCCC-CCCHhhHhhhcCcHHHHHHHHHcCCCCCCCCC
Q 022481 224 ANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQ-GESPLDCAPVTLQYKMRQKMEEDKNNVGSTTS 295 (296)
Q Consensus 224 vn~~d~~g~TpLh~A~~~g~~~iv~~LL~~ga~~~~~d~~-g~TpL~~A~~~g~~~iv~~Ll~~gadi~~~n~ 295 (296)
.|..|..|+|+||+|+..+..+++++||++|++++.+|.. |+||||.|...|+++++-+||.+|+.+.++|+
T Consensus 45 anikD~~GR~alH~~~S~~k~~~l~wLlqhGidv~vqD~ESG~taLHRaiyyG~idca~lLL~~g~SL~i~Dk 117 (1267)
T KOG0783|consen 45 ANIKDRYGRTALHIAVSENKNSFLRWLLQHGIDVFVQDEESGYTALHRAIYYGNIDCASLLLSKGRSLRIKDK 117 (1267)
T ss_pred hhHHHhhccceeeeeeccchhHHHHHHHhcCceeeeccccccchHhhHhhhhchHHHHHHHHhcCCceEEecc
Confidence 7889999999999999999999999999999999999976 99999999999999999999999998877664
No 110
>KOG0511 consensus Ankyrin repeat protein [General function prediction only]
Probab=98.77 E-value=3.2e-08 Score=87.39 Aligned_cols=82 Identities=28% Similarity=0.358 Sum_probs=71.1
Q ss_pred HHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHhhHhhhcCcHHHH
Q 022481 201 GLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCAPVTLQYKMR 280 (296)
Q Consensus 201 ~Lh~A~~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~iv~~LL~~ga~~~~~d~~g~TpL~~A~~~g~~~iv 280 (296)
-|.+|++.|+.+.|+.|++.|.+||..|.+..+||.+|...||.++|++||++||-...-..+|...+.-|. +..|-
T Consensus 39 elceacR~GD~d~v~~LVetgvnVN~vD~fD~spL~lAsLcGHe~vvklLLenGAiC~rdtf~G~RC~YgaL---nd~IR 115 (516)
T KOG0511|consen 39 ELCEACRAGDVDRVRYLVETGVNVNAVDRFDSSPLYLASLCGHEDVVKLLLENGAICSRDTFDGDRCHYGAL---NDRIR 115 (516)
T ss_pred HHHHHhhcccHHHHHHHHHhCCCcchhhcccccHHHHHHHcCcHHHHHHHHHcCCcccccccCcchhhhhhh---hHHHH
Confidence 689999999999999999999999999999999999999999999999999999988877778887765444 34444
Q ss_pred HHHHH
Q 022481 281 QKMEE 285 (296)
Q Consensus 281 ~~Ll~ 285 (296)
++||.
T Consensus 116 ~mlls 120 (516)
T KOG0511|consen 116 RMLLS 120 (516)
T ss_pred HHHHH
Confidence 45544
No 111
>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]
Probab=98.62 E-value=9e-08 Score=77.15 Aligned_cols=53 Identities=25% Similarity=0.246 Sum_probs=32.3
Q ss_pred HHHHHHHcCCHHHHHHHHHcC-CCCcccCCCCCcHHHHHHHcCCHHHHHHHHHC
Q 022481 201 GLRDAIKNGDAAAVKKLLSEG-VDANFCDKQGMSLLHLAALFNRTDIAFILMES 253 (296)
Q Consensus 201 ~Lh~A~~~g~~~~v~~Ll~~g-advn~~d~~g~TpLh~A~~~g~~~iv~~LL~~ 253 (296)
+||.|+..|..+++.+|+.+| +++.+.|..|.+++.+|-..|+.+++..|-++
T Consensus 15 almcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~ 68 (223)
T KOG2384|consen 15 ALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFEN 68 (223)
T ss_pred HHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHH
Confidence 666666666666666666665 55666666666666666666666666665555
No 112
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=98.59 E-value=7.4e-08 Score=89.18 Aligned_cols=82 Identities=17% Similarity=0.143 Sum_probs=68.3
Q ss_pred cccccCCCCCCCCCCCCCccccccChHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHC
Q 022481 174 FSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMES 253 (296)
Q Consensus 174 ~~~ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~iv~~LL~~ 253 (296)
+-+||..|.....-...+ ...|.|+||+|+..|++.+.++|+.+|+|+..+|..|+|+|.||-+.|..+++..||++
T Consensus 640 ~~lLLAhg~~~e~~~t~~---~~~grt~LHLa~~~gnVvl~QLLiWyg~dv~~rda~g~t~l~yar~a~sqec~d~llq~ 716 (749)
T KOG0705|consen 640 AILLLAHGSREEVNETCG---EGDGRTALHLAARKGNVVLAQLLIWYGVDVMARDAHGRTALFYARQAGSQECIDVLLQY 716 (749)
T ss_pred HHHHHhccCchhhhcccc---CCCCcchhhhhhhhcchhHHHHHHHhCccceecccCCchhhhhHhhcccHHHHHHHHHc
Confidence 456677776554333222 23567899999999999999999999999999999999999999999999999999999
Q ss_pred CCCCC
Q 022481 254 GANMD 258 (296)
Q Consensus 254 ga~~~ 258 (296)
|...+
T Consensus 717 gcp~e 721 (749)
T KOG0705|consen 717 GCPDE 721 (749)
T ss_pred CCCcc
Confidence 97544
No 113
>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]
Probab=98.59 E-value=3.9e-08 Score=97.11 Aligned_cols=89 Identities=30% Similarity=0.399 Sum_probs=82.2
Q ss_pred cChHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHhhHhhhcCc
Q 022481 197 VNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCAPVTLQ 276 (296)
Q Consensus 197 ~~~t~Lh~A~~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~iv~~LL~~ga~~~~~d~~g~TpL~~A~~~g~ 276 (296)
.|.++||.|+..|...++++||+.|+++|..|..|.||||.+...|++..+..|+++||+.++.+.+|.++|++|....+
T Consensus 655 ~~~s~lh~a~~~~~~~~~e~ll~~ga~vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~~~a~~~~~~~~l~~a~~~~~ 734 (785)
T KOG0521|consen 655 IGCSLLHVAVGTGDSGAVELLLQNGADVNALDSKGRTPLHHATASGHTSIACLLLKRGADPNAFDPDGKLPLDIAMEAAN 734 (785)
T ss_pred cccchhhhhhccchHHHHHHHHhcCCcchhhhccCCCcchhhhhhcccchhhhhccccccccccCccCcchhhHHhhhcc
Confidence 45779999999999999999999999999999999999999999999999999999999999999999999999987777
Q ss_pred HHHHHHHHH
Q 022481 277 YKMRQKMEE 285 (296)
Q Consensus 277 ~~iv~~Ll~ 285 (296)
.+++-+|.-
T Consensus 735 ~d~~~l~~l 743 (785)
T KOG0521|consen 735 ADIVLLLRL 743 (785)
T ss_pred ccHHHHHhh
Confidence 777666543
No 114
>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]
Probab=98.57 E-value=2.3e-07 Score=85.83 Aligned_cols=95 Identities=20% Similarity=0.238 Sum_probs=85.0
Q ss_pred HHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCC--CCccCCCCCCHhhHhhhcCcHH
Q 022481 201 GLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGAN--MDCKNAQGESPLDCAPVTLQYK 278 (296)
Q Consensus 201 ~Lh~A~~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~iv~~LL~~ga~--~~~~d~~g~TpL~~A~~~g~~~ 278 (296)
-|..|+..+++--++.+..+|.++-.++.+-.|.||+|+..|+-+||+|||++|.. +++.|..|.|+||-|+..++..
T Consensus 869 eil~av~~~D~~klqE~h~~gg~ll~~~~~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~~~r~ 948 (1004)
T KOG0782|consen 869 EILRAVLSSDLMKLQETHLNGGSLLIQGPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQRNRA 948 (1004)
T ss_pred HHHHHHHhccHHHHHHHHhcCCceEeeCcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhcchH
Confidence 47788888888777777778999999999999999999999999999999999854 6778899999999999999999
Q ss_pred HHHHHHHcCCCCCCCCC
Q 022481 279 MRQKMEEDKNNVGSTTS 295 (296)
Q Consensus 279 iv~~Ll~~gadi~~~n~ 295 (296)
+.++|++.||.+..+|+
T Consensus 949 vc~~lvdagasl~ktd~ 965 (1004)
T KOG0782|consen 949 VCQLLVDAGASLRKTDS 965 (1004)
T ss_pred HHHHHHhcchhheeccc
Confidence 99999999998877664
No 115
>KOG1843 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.50 E-value=2.8e-08 Score=88.39 Aligned_cols=66 Identities=15% Similarity=0.046 Sum_probs=57.3
Q ss_pred CCCCCCCcccccccccccccc-ccccccccccccceEcCCCCCCceecC-CCCCCCceeccccchhhh
Q 022481 2 SIEPPAFQEATRCDVCKCSFN-TFRRRHHCRCCGRTLCHEHSSDQMTLP-QFGIHTNVRVCADCFNSS 67 (296)
Q Consensus 2 ~~~w~~~~~~~~C~~C~~~f~-~~~r~hhCr~Cg~~~C~~c~~~~~~~~-~~~~~~~~rvC~~C~~~~ 67 (296)
+-.|.++..+..|+.|...|+ .+.||||||.|+.+||..|+..+..+| .+....+.|||+.|+..+
T Consensus 151 ap~f~yskskglfagvSvegsaI~erR~anR~~yg~~cra~~ilsg~vp~p~a~d~l~RVldS~~~nl 218 (473)
T KOG1843|consen 151 APVFLYSKSKGLFAGVSVEGSAIIERREANRKFYGIFCRAKSILSGLVPVPFAADPLQRVLDSCAFNL 218 (473)
T ss_pred CccccccccccceeeeecccceeeecchhhhhhcCccchhhhhhccCCCCCcccCCHHHHHhhHhhcc
Confidence 457999999999999999999 567999999999999999998775554 344567899999999988
No 116
>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]
Probab=98.49 E-value=2.2e-07 Score=84.68 Aligned_cols=82 Identities=21% Similarity=0.165 Sum_probs=69.5
Q ss_pred CCCCCCCcCcccccCCCCCCCCCCCCCccccccChHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCH
Q 022481 165 SRGSTSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRT 244 (296)
Q Consensus 165 ~~~~~~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~ 244 (296)
...++.....-.||..|++.|...... |.||||.|++.|...-+++|+-+|+|++..|..|+||+.||-..||-
T Consensus 140 svRt~nlet~LRll~lGA~~N~~hpek------g~TpLHvAAk~Gq~~Q~ElL~vYGAD~~a~d~~GmtP~~~AR~~gH~ 213 (669)
T KOG0818|consen 140 SVRTGNLETCLRLLSLGAQANFFHPEK------GNTPLHVAAKAGQILQAELLAVYGADPGAQDSSGMTPVDYARQGGHH 213 (669)
T ss_pred HhhcccHHHHHHHHHcccccCCCCccc------CCchhHHHHhccchhhhhHHhhccCCCCCCCCCCCcHHHHHHhcCch
Confidence 334444455556889999999887643 44799999999999999999999999999999999999999999999
Q ss_pred HHHHHHHH
Q 022481 245 DIAFILME 252 (296)
Q Consensus 245 ~iv~~LL~ 252 (296)
++.+.|++
T Consensus 214 ~laeRl~e 221 (669)
T KOG0818|consen 214 ELAERLVE 221 (669)
T ss_pred HHHHHHHH
Confidence 98887776
No 117
>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]
Probab=98.31 E-value=1.9e-07 Score=84.74 Aligned_cols=86 Identities=22% Similarity=0.198 Sum_probs=74.6
Q ss_pred ccCCCCCCCCcCcccccCCCCCCCCCCCCCccccccChHHHHHHHHcCCHHHHHHHHHc-CCCCcccCCCCCcHHHHHHH
Q 022481 162 TARSRGSTSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSE-GVDANFCDKQGMSLLHLAAL 240 (296)
Q Consensus 162 ~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~-gadvn~~d~~g~TpLh~A~~ 240 (296)
..-++-.++...++.+.-.|.+.+..|...++ +||.||..|+++++++||+. +.+++.+|.+|+|||.-|..
T Consensus 510 ~~~aa~~GD~~alrRf~l~g~D~~~~DyD~RT-------aLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~rtPlDdA~~ 582 (622)
T KOG0506|consen 510 VMYAAKNGDLSALRRFALQGMDLETKDYDDRT-------ALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGRTPLDDAKH 582 (622)
T ss_pred hhhhhhcCCHHHHHHHHHhcccccccccccch-------hheeecccCceeHHHHHHHHHcCCCChhhccCCCcchHhHh
Confidence 34455566777777788888888888877776 99999999999999999975 89999999999999999999
Q ss_pred cCCHHHHHHHHHCC
Q 022481 241 FNRTDIAFILMESG 254 (296)
Q Consensus 241 ~g~~~iv~~LL~~g 254 (296)
++|.+++++|-++-
T Consensus 583 F~h~~v~k~L~~~~ 596 (622)
T KOG0506|consen 583 FKHKEVVKLLEEAQ 596 (622)
T ss_pred cCcHHHHHHHHHHh
Confidence 99999999998763
No 118
>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]
Probab=98.27 E-value=6.2e-07 Score=88.59 Aligned_cols=96 Identities=20% Similarity=0.185 Sum_probs=80.5
Q ss_pred cChHHHHHHHHcCCHHHHHHHHHc-CCCCcccCCCCCcHHHHHHHcCCHHHHHHH-HHCCCCCCccCCCCCCHhhHhhhc
Q 022481 197 VNGEGLRDAIKNGDAAAVKKLLSE-GVDANFCDKQGMSLLHLAALFNRTDIAFIL-MESGANMDCKNAQGESPLDCAPVT 274 (296)
Q Consensus 197 ~~~t~Lh~A~~~g~~~~v~~Ll~~-gadvn~~d~~g~TpLh~A~~~g~~~iv~~L-L~~ga~~~~~d~~g~TpL~~A~~~ 274 (296)
.+++.||.++..+..-+++.+++. |......|.+|.-.+|+++ .++++.+-+| +-.|..++.+|..|+||||||+..
T Consensus 573 r~~lllhL~a~~lyawLie~~~e~~~~~~~eld~d~qgV~hfca-~lg~ewA~ll~~~~~~ai~i~D~~G~tpL~wAa~~ 651 (975)
T KOG0520|consen 573 RDMLLLHLLAELLYAWLIEKVIEWAGSGDLELDRDGQGVIHFCA-ALGYEWAFLPISADGVAIDIRDRNGWTPLHWAAFR 651 (975)
T ss_pred cchHHHHHHHHHhHHHHHHHHhcccccCchhhcccCCChhhHhh-hcCCceeEEEEeecccccccccCCCCcccchHhhc
Confidence 568899999999999999999986 7777777888888999954 4555555444 456999999999999999999999
Q ss_pred CcHHHHHHHHHcCCCCCCC
Q 022481 275 LQYKMRQKMEEDKNNVGST 293 (296)
Q Consensus 275 g~~~iv~~Ll~~gadi~~~ 293 (296)
|+..++..|++.|++..+.
T Consensus 652 G~e~l~a~l~~lga~~~~~ 670 (975)
T KOG0520|consen 652 GREKLVASLIELGADPGAV 670 (975)
T ss_pred CHHHHHHHHHHhccccccc
Confidence 9999999999999877643
No 119
>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]
Probab=98.25 E-value=4.2e-06 Score=67.69 Aligned_cols=68 Identities=16% Similarity=0.098 Sum_probs=64.3
Q ss_pred CCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHCC-CCCCccCCCCCCHhhHhhhcCcHHHHHHHHHcCC
Q 022481 221 GVDANFCDKQGMSLLHLAALFNRTDIAFILMESG-ANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKN 288 (296)
Q Consensus 221 gadvn~~d~~g~TpLh~A~~~g~~~iv~~LL~~g-a~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga 288 (296)
+.+||.+|.+|||+||.|+..|..+.+.+|+.+| +.+...|..|.+++.+|-..|..+.++.|.+.--
T Consensus 2 e~~in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~~~ 70 (223)
T KOG2384|consen 2 EGNINARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFENDR 70 (223)
T ss_pred CCCccchhhhcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHHhc
Confidence 4689999999999999999999999999999999 9999999999999999999999999999988643
No 120
>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=98.23 E-value=1.9e-06 Score=83.60 Aligned_cols=96 Identities=17% Similarity=0.099 Sum_probs=67.0
Q ss_pred CCCCCCCCCccccccChHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCC-----
Q 022481 183 VTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANM----- 257 (296)
Q Consensus 183 ~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~iv~~LL~~ga~~----- 257 (296)
++|..|..|+. +|+.|+.+.+.+++++|++++..+ .-+|.+|+..|..++|++|+.+-...
T Consensus 54 ninc~d~lGr~-------al~iai~nenle~~eLLl~~~~~~-------gdALL~aI~~~~v~~VE~ll~~~~~~~~~~~ 119 (822)
T KOG3609|consen 54 NINCRDPLGRL-------ALHIAIDNENLELQELLLDTSSEE-------GDALLLAIAVGSVPLVELLLVHFVDAPYLER 119 (822)
T ss_pred chhccChHhhh-------ceecccccccHHHHHHHhcCcccc-------chHHHHHHHHHHHHHHHHHHhcccccchhcc
Confidence 34455555554 777777777777777777765544 24667777777777777777653221
Q ss_pred -----CccCCCCCCHhhHhhhcCcHHHHHHHHHcCCCCCC
Q 022481 258 -----DCKNAQGESPLDCAPVTLQYKMRQKMEEDKNNVGS 292 (296)
Q Consensus 258 -----~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gadi~~ 292 (296)
...-.-+-|||.+|+..+++||+++||.+|+.+-.
T Consensus 120 ~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~kg~~i~~ 159 (822)
T KOG3609|consen 120 SGDANSPHFTPDITPLMLAAHLNNFEILQCLLTRGHCIPI 159 (822)
T ss_pred ccccCcccCCCCccHHHHHHHhcchHHHHHHHHcCCCCCC
Confidence 11223467999999999999999999999998754
No 121
>KOG0511 consensus Ankyrin repeat protein [General function prediction only]
Probab=98.23 E-value=1.9e-06 Score=76.44 Aligned_cols=58 Identities=21% Similarity=0.163 Sum_probs=55.1
Q ss_pred CcHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHhhHhhhcCcHHHHHHHHHcCCC
Q 022481 232 MSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKNN 289 (296)
Q Consensus 232 ~TpLh~A~~~g~~~iv~~LL~~ga~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad 289 (296)
.--|..|++.|..+.|++|++.|.++|.+|.....||.+|...|+.++|++||++||-
T Consensus 37 f~elceacR~GD~d~v~~LVetgvnVN~vD~fD~spL~lAsLcGHe~vvklLLenGAi 94 (516)
T KOG0511|consen 37 FGELCEACRAGDVDRVRYLVETGVNVNAVDRFDSSPLYLASLCGHEDVVKLLLENGAI 94 (516)
T ss_pred hHHHHHHhhcccHHHHHHHHHhCCCcchhhcccccHHHHHHHcCcHHHHHHHHHcCCc
Confidence 4458889999999999999999999999999999999999999999999999999984
No 122
>KOG0522 consensus Ankyrin repeat protein [General function prediction only]
Probab=98.20 E-value=3e-06 Score=78.17 Aligned_cols=68 Identities=25% Similarity=0.285 Sum_probs=59.4
Q ss_pred CCCCCCCCCCCCCccccccChHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHC
Q 022481 179 NPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMES 253 (296)
Q Consensus 179 ~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~iv~~LL~~ 253 (296)
+.+..++..|..+.+ |||.|+..|+.+.++.|+..|+++..+|..||++||.|+..|+.+++..+|.+
T Consensus 43 ~~~~~id~~D~~g~T-------pLhlAV~Lg~~~~a~~Ll~a~Adv~~kN~~gWs~L~EAv~~g~~q~i~~vlr~ 110 (560)
T KOG0522|consen 43 KVSLVIDRRDPPGRT-------PLHLAVRLGHVEAARILLSAGADVSIKNNEGWSPLHEAVSTGNEQIITEVLRH 110 (560)
T ss_pred hhhceeccccCCCCc-------cHHHHHHhcCHHHHHHHHhcCCCccccccccccHHHHHHHcCCHHHHHHHHHH
Confidence 345566677766655 99999999999999999999999999999999999999999999988777654
No 123
>KOG4424 consensus Predicted Rho/Rac guanine nucleotide exchange factor/faciogenital dysplasia protein 3 [Signal transduction mechanisms]
Probab=98.05 E-value=1.1e-06 Score=81.78 Aligned_cols=62 Identities=32% Similarity=0.560 Sum_probs=52.7
Q ss_pred Ccccccccccccccc-ccccccccccccceEcCCCCCCceecCCCCCCCceeccccchhhhccc
Q 022481 8 FQEATRCDVCKCSFN-TFRRRHHCRCCGRTLCHEHSSDQMTLPQFGIHTNVRVCADCFNSSSRT 70 (296)
Q Consensus 8 ~~~~~~C~~C~~~f~-~~~r~hhCr~Cg~~~C~~c~~~~~~~~~~~~~~~~rvC~~C~~~~~~~ 70 (296)
+.+...|+.|+.+|+ ...|||||+.||.++|+.|+..+..+.. ...+..|||..||......
T Consensus 412 ~~k~~~c~~c~e~~~s~t~~R~~~k~~~~vlc~~cs~~~~~l~~-~~s~ssrv~~~~~~~~~~a 474 (623)
T KOG4424|consen 412 DNKVTSCDSCEETFNSITFRRHRCKAKGAVLCDKCSDFMAKLSY-DNSRSSRVCMDRYLTPSGA 474 (623)
T ss_pred ccccccchhhcCchhhHHHhhhhhhhccceeeccccchhhhhcc-cccchhhhhhhhccCCCCC
Confidence 677889999999999 4679999999999999999998876643 4468899999999876544
No 124
>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]
Probab=98.04 E-value=4.1e-06 Score=83.04 Aligned_cols=76 Identities=20% Similarity=0.276 Sum_probs=67.8
Q ss_pred HcCCCCccc--CCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHhhHhhhcCcHHHHHHHHHcCCCCCCCC
Q 022481 219 SEGVDANFC--DKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKNNVGSTT 294 (296)
Q Consensus 219 ~~gadvn~~--d~~g~TpLh~A~~~g~~~iv~~LL~~ga~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gadi~~~n 294 (296)
..++++|.. -..|.|+||.|+..+...++++||++|+++|..|..|+||||.+...|+...+.+|+++||+.++.|
T Consensus 642 ~~~~~~n~~~~~~~~~s~lh~a~~~~~~~~~e~ll~~ga~vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~~~a~~ 719 (785)
T KOG0521|consen 642 AHGCCENWPVVLCIGCSLLHVAVGTGDSGAVELLLQNGADVNALDSKGRTPLHHATASGHTSIACLLLKRGADPNAFD 719 (785)
T ss_pred cchhhhccchhhhcccchhhhhhccchHHHHHHHHhcCCcchhhhccCCCcchhhhhhcccchhhhhccccccccccC
Confidence 345555543 2457999999999999999999999999999999999999999999999999999999999998765
No 125
>KOG1811 consensus Predicted Zn2+-binding protein, contains FYVE domain [General function prediction only]
Probab=97.98 E-value=8.2e-07 Score=83.11 Aligned_cols=67 Identities=24% Similarity=0.487 Sum_probs=56.1
Q ss_pred CCCCCCc----cccccccc-cccccccccccccccccceEcCCCCCCceecCCCCCCCceeccccchhhhcc
Q 022481 3 IEPPAFQ----EATRCDVC-KCSFNTFRRRHHCRCCGRTLCHEHSSDQMTLPQFGIHTNVRVCADCFNSSSR 69 (296)
Q Consensus 3 ~~w~~~~----~~~~C~~C-~~~f~~~~r~hhCr~Cg~~~C~~c~~~~~~~~~~~~~~~~rvC~~C~~~~~~ 69 (296)
..|+|+. .-..|+.| ...|..|+||||||.||...|..|...+....+.|...+.++|+.|+.....
T Consensus 314 ~nfq~darrafs~a~~~a~~R~~~kd~~Rk~~~~g~Ga~e~aa~ea~kgiqEd~gse~~Adg~Dq~psvsia 385 (1141)
T KOG1811|consen 314 HNFQPDARRAFSEAICMACCREHFKDFNRKHHCRGCGALECAACEAKKGIQEDCGSENPADGCDQCPSVSIA 385 (1141)
T ss_pred hhcChhhhhhhhhhHHHHHHHHHHHHHHHhhhccccchHHHhHHHHhhhhhhcccccCcccccccccchhhH
Confidence 3588877 44678865 5579999999999999999999999998888888888899999999966443
No 126
>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]
Probab=97.83 E-value=8.4e-06 Score=80.80 Aligned_cols=85 Identities=20% Similarity=0.200 Sum_probs=68.5
Q ss_pred HHHHHHHcCCHHHHHHH-HHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCc------cCCCCCCHhhHhhh
Q 022481 201 GLRDAIKNGDAAAVKKL-LSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDC------KNAQGESPLDCAPV 273 (296)
Q Consensus 201 ~Lh~A~~~g~~~~v~~L-l~~gadvn~~d~~g~TpLh~A~~~g~~~iv~~LL~~ga~~~~------~d~~g~TpL~~A~~ 273 (296)
.+|.++ .++++.+-+| +..|..++.+|..||||||||+.+|+..++..|++.|++..+ .+-.|.|+-.+|..
T Consensus 611 V~hfca-~lg~ewA~ll~~~~~~ai~i~D~~G~tpL~wAa~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~s 689 (975)
T KOG0520|consen 611 VIHFCA-ALGYEWAFLPISADGVAIDIRDRNGWTPLHWAAFRGREKLVASLIELGADPGAVTDPSPETPGGKTAADLARA 689 (975)
T ss_pred hhhHhh-hcCCceeEEEEeecccccccccCCCCcccchHhhcCHHHHHHHHHHhccccccccCCCCCCCCCCchhhhhhc
Confidence 788844 4555555444 457999999999999999999999999999999988876543 34468999999999
Q ss_pred cCcHHHHHHHHHc
Q 022481 274 TLQYKMRQKMEED 286 (296)
Q Consensus 274 ~g~~~iv~~Ll~~ 286 (296)
.|+..+..+|-+.
T Consensus 690 ~g~~gia~~lse~ 702 (975)
T KOG0520|consen 690 NGHKGIAGYLSEK 702 (975)
T ss_pred ccccchHHHHhhh
Confidence 9998888777653
No 127
>KOG0230 consensus Phosphatidylinositol-4-phosphate 5-kinase and related FYVE finger-containing proteins [Signal transduction mechanisms]
Probab=97.67 E-value=5.8e-05 Score=77.43 Aligned_cols=52 Identities=35% Similarity=0.851 Sum_probs=42.2
Q ss_pred ccccccccccccccccccccccccccceEcCCCCCCceecCCCCCCCceeccccchhhhcccC
Q 022481 9 QEATRCDVCKCSFNTFRRRHHCRCCGRTLCHEHSSDQMTLPQFGIHTNVRVCADCFNSSSRTG 71 (296)
Q Consensus 9 ~~~~~C~~C~~~f~~~~r~hhCr~Cg~~~C~~c~~~~~~~~~~~~~~~~rvC~~C~~~~~~~~ 71 (296)
.....|..|+ +.++||||||.||++||++|.... .+.+|||..|+.......
T Consensus 3 ~s~~~~~~~~---t~~~~~~~~~~~g~~~~~~~~~~~--------~~~i~~~~~~~~~~~~~~ 54 (1598)
T KOG0230|consen 3 QSSNVCYDCD---TSVNRRHHCRVCGRVFCSKCQDSP--------ETSIRVCNECRGQWEQGN 54 (1598)
T ss_pred ccccchhccc---cccccCCCCcccCceeccccCCCC--------ccceeehhhhhhhccccC
Confidence 4556788888 888999999999999999998321 238999999999876553
No 128
>KOG2505 consensus Ankyrin repeat protein [General function prediction only]
Probab=97.58 E-value=0.00016 Score=66.64 Aligned_cols=71 Identities=18% Similarity=0.284 Sum_probs=57.8
Q ss_pred HHHHHHHHHcCCCCccc------CCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHhhHhhhcCcHHHHHHHH
Q 022481 211 AAAVKKLLSEGVDANFC------DKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKME 284 (296)
Q Consensus 211 ~~~v~~Ll~~gadvn~~------d~~g~TpLh~A~~~g~~~iv~~LL~~ga~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll 284 (296)
...|++|.+++++.|.. +...-|+||+|+..|...+|.+||+.|+|+..+|..|.||..++. +.++-..++
T Consensus 404 p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp~~kd~~Grtpy~ls~---nkdVk~~F~ 480 (591)
T KOG2505|consen 404 PDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEGCDPSTKDGAGRTPYSLSA---NKDVKSIFI 480 (591)
T ss_pred hhHHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHHhcCCchhcccCCCCcccccc---cHHHHHHHH
Confidence 45678888888777542 445679999999999999999999999999999999999999987 444444333
No 129
>smart00248 ANK ankyrin repeats. Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.
Probab=97.39 E-value=0.00035 Score=37.79 Aligned_cols=26 Identities=35% Similarity=0.547 Sum_probs=12.1
Q ss_pred CCcHHHHHHHcCCHHHHHHHHHCCCC
Q 022481 231 GMSLLHLAALFNRTDIAFILMESGAN 256 (296)
Q Consensus 231 g~TpLh~A~~~g~~~iv~~LL~~ga~ 256 (296)
|.|+||+|+..++.+++++|+++|.+
T Consensus 2 ~~~~l~~~~~~~~~~~~~~ll~~~~~ 27 (30)
T smart00248 2 GRTPLHLAAENGNLEVVKLLLDKGAD 27 (30)
T ss_pred CCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 34444444444444444444444443
No 130
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=97.34 E-value=9.7e-05 Score=56.52 Aligned_cols=51 Identities=18% Similarity=0.479 Sum_probs=41.0
Q ss_pred ccccccccccccccc-ccccccccccceEcCCCCCCceecCCCCCCCceeccccchhhh
Q 022481 10 EATRCDVCKCSFNTF-RRRHHCRCCGRTLCHEHSSDQMTLPQFGIHTNVRVCADCFNSS 67 (296)
Q Consensus 10 ~~~~C~~C~~~f~~~-~r~hhCr~Cg~~~C~~c~~~~~~~~~~~~~~~~rvC~~C~~~~ 67 (296)
....|..|+++|+++ ++.+.|..|+.-||..|... ....+..+|..|+...
T Consensus 53 ~~~~C~~C~~~fg~l~~~~~~C~~C~~~VC~~C~~~-------~~~~~~WlC~vC~k~r 104 (118)
T PF02318_consen 53 GERHCARCGKPFGFLFNRGRVCVDCKHRVCKKCGVY-------SKKEPIWLCKVCQKQR 104 (118)
T ss_dssp CCSB-TTTS-BCSCTSTTCEEETTTTEEEETTSEEE-------TSSSCCEEEHHHHHHH
T ss_pred CCcchhhhCCcccccCCCCCcCCcCCccccCccCCc-------CCCCCCEEChhhHHHH
Confidence 456899999999966 68999999999999999865 2246789999999764
No 131
>smart00248 ANK ankyrin repeats. Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.
Probab=97.32 E-value=0.00037 Score=37.68 Aligned_cols=29 Identities=14% Similarity=0.291 Sum_probs=26.7
Q ss_pred CCCCHhhHhhhcCcHHHHHHHHHcCCCCC
Q 022481 263 QGESPLDCAPVTLQYKMRQKMEEDKNNVG 291 (296)
Q Consensus 263 ~g~TpL~~A~~~g~~~iv~~Ll~~gadi~ 291 (296)
.|.||||+|+..++.+++++|+++|.+++
T Consensus 1 ~~~~~l~~~~~~~~~~~~~~ll~~~~~~~ 29 (30)
T smart00248 1 DGRTPLHLAAENGNLEVVKLLLDKGADIN 29 (30)
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence 47899999999999999999999999875
No 132
>KOG0230 consensus Phosphatidylinositol-4-phosphate 5-kinase and related FYVE finger-containing proteins [Signal transduction mechanisms]
Probab=97.29 E-value=0.00015 Score=74.57 Aligned_cols=34 Identities=38% Similarity=0.938 Sum_probs=32.7
Q ss_pred CCCccccccccccccccccccccccccccceEcCCC
Q 022481 6 PAFQEATRCDVCKCSFNTFRRRHHCRCCGRTLCHEH 41 (296)
Q Consensus 6 ~~~~~~~~C~~C~~~f~~~~r~hhCr~Cg~~~C~~c 41 (296)
+++...+.|..|.++|..|||+||| ||+|||..|
T Consensus 92 m~d~s~~ec~~~~~~~~t~Rr~~~~--~gqi~~ss~ 125 (1598)
T KOG0230|consen 92 MPDSSSKECYDCEQKFETFRRKHHC--CGQIFCSSC 125 (1598)
T ss_pred CCccccchhhhhccchhhhhccccc--CccccCCcc
Confidence 6788899999999999999999999 999999999
No 133
>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=97.03 E-value=0.00081 Score=65.86 Aligned_cols=81 Identities=21% Similarity=0.159 Sum_probs=72.3
Q ss_pred HHHHHHHcCCHHHHHHHHHc--C--CCCcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHhhHhhhcCc
Q 022481 201 GLRDAIKNGDAAAVKKLLSE--G--VDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCAPVTLQ 276 (296)
Q Consensus 201 ~Lh~A~~~g~~~~v~~Ll~~--g--advn~~d~~g~TpLh~A~~~g~~~iv~~LL~~ga~~~~~d~~g~TpL~~A~~~g~ 276 (296)
....|+..|+...|+..++. . .++|.+|.-|.++|++|+.+.+.+++++|++++..+ ..+|.+|+..|.
T Consensus 28 ~fL~a~E~gd~~~V~k~l~~~~~~~lninc~d~lGr~al~iai~nenle~~eLLl~~~~~~-------gdALL~aI~~~~ 100 (822)
T KOG3609|consen 28 GFLLAHENGDVPLVAKALEYKAVSKLNINCRDPLGRLALHIAIDNENLELQELLLDTSSEE-------GDALLLAIAVGS 100 (822)
T ss_pred HHHHHHHcCChHHHHHHHHhccccccchhccChHhhhceecccccccHHHHHHHhcCcccc-------chHHHHHHHHHH
Confidence 67899999999999999975 2 678899999999999999999999999999997665 348999999999
Q ss_pred HHHHHHHHHcCC
Q 022481 277 YKMRQKMEEDKN 288 (296)
Q Consensus 277 ~~iv~~Ll~~ga 288 (296)
.++|++|+.+-.
T Consensus 101 v~~VE~ll~~~~ 112 (822)
T KOG3609|consen 101 VPLVELLLVHFV 112 (822)
T ss_pred HHHHHHHHhccc
Confidence 999999999744
No 134
>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC. The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].
Probab=96.48 E-value=0.011 Score=49.47 Aligned_cols=90 Identities=14% Similarity=0.070 Sum_probs=64.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHcCCCCcccC----CCCCcHHHHH--HHcCCHHHHHHHHHCC-CCCCcc---CCCCCCHhh
Q 022481 200 EGLRDAIKNGDAAAVKKLLSEGVDANFCD----KQGMSLLHLA--ALFNRTDIAFILMESG-ANMDCK---NAQGESPLD 269 (296)
Q Consensus 200 t~Lh~A~~~g~~~~v~~Ll~~gadvn~~d----~~g~TpLh~A--~~~g~~~iv~~LL~~g-a~~~~~---d~~g~TpL~ 269 (296)
++|.+++.++..+++.+||.+- +...+| ..+.-=+-|+ ....+..++++.|.+| +++|.+ -+.|.|-|+
T Consensus 181 ~Am~~si~~~K~dva~~lls~f-~ft~~dv~~~~~~~ydieY~LS~h~a~~kvL~~Fi~~Glv~vN~~F~~~NSGdtMLD 259 (284)
T PF06128_consen 181 QAMWLSIGNAKEDVALYLLSKF-NFTKQDVASMEKELYDIEYLLSEHSASYKVLEYFINRGLVDVNKKFQKVNSGDTMLD 259 (284)
T ss_pred HHHHHHhcccHHHHHHHHHhhc-ceecchhhhcCcchhhHHHHHhhcCCcHHHHHHHHhccccccchhhhccCCcchHHH
Confidence 3777888888888888888641 222222 1122233333 2345677889999997 677753 567999999
Q ss_pred HhhhcCcHHHHHHHHHcCCCC
Q 022481 270 CAPVTLQYKMRQKMEEDKNNV 290 (296)
Q Consensus 270 ~A~~~g~~~iv~~Ll~~gadi 290 (296)
-|...++.+|+.+||++||-.
T Consensus 260 NA~Ky~~~emi~~Llk~GA~~ 280 (284)
T PF06128_consen 260 NAMKYKNSEMIAFLLKYGAIS 280 (284)
T ss_pred hHHhcCcHHHHHHHHHcCccc
Confidence 999999999999999999954
No 135
>KOG2505 consensus Ankyrin repeat protein [General function prediction only]
Probab=96.43 E-value=0.003 Score=58.44 Aligned_cols=67 Identities=21% Similarity=0.139 Sum_probs=50.9
Q ss_pred cCcccccCCCCCCCCCCCCCccccccChHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHH
Q 022481 172 SNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAA 239 (296)
Q Consensus 172 ~~~~~ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~ 239 (296)
..+..|...+...|..-..... +....|+||+|+..|.-++|.+||+.|+|+...|..|.||..++.
T Consensus 405 ~~ie~lken~lsgnf~~~pe~~-~~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp~~kd~~Grtpy~ls~ 471 (591)
T KOG2505|consen 405 DSIEALKENLLSGNFDVTPEAN-DYLTSTFLHYAAAQGARKCVKYFLEEGCDPSTKDGAGRTPYSLSA 471 (591)
T ss_pred hHHHHHHhcCCccccccccccc-ccccchHHHHHHhcchHHHHHHHHHhcCCchhcccCCCCcccccc
Confidence 3455566666665543322222 223457999999999999999999999999999999999999987
No 136
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=94.44 E-value=0.03 Score=41.89 Aligned_cols=41 Identities=17% Similarity=0.386 Sum_probs=30.7
Q ss_pred CCCCCcccccccccccccccc----------ccccccccccceEcCCCCCC
Q 022481 4 EPPAFQEATRCDVCKCSFNTF----------RRRHHCRCCGRTLCHEHSSD 44 (296)
Q Consensus 4 ~w~~~~~~~~C~~C~~~f~~~----------~r~hhCr~Cg~~~C~~c~~~ 44 (296)
.|........|..|+++|.-. ..|+.|..|+++||.+|=.+
T Consensus 48 ~~~~~~~~~~C~~C~~~f~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~f 98 (112)
T TIGR00622 48 PLEEYNGSRFCFGCQGPFPKPPVSPFDELKDSHRYVCAVCKNVFCVDCDVF 98 (112)
T ss_pred cccccCCCCcccCcCCCCCCcccccccccccccceeCCCCCCccccccchh
Confidence 444333445799999999742 35788999999999999543
No 137
>KOG1729 consensus FYVE finger containing protein [General function prediction only]
Probab=94.22 E-value=0.0064 Score=53.48 Aligned_cols=64 Identities=27% Similarity=0.413 Sum_probs=49.0
Q ss_pred CCCCCCccccccccccccccccccccccccccceEcCCCCC-Cceec---CCC--CCCCceeccccchhh
Q 022481 3 IEPPAFQEATRCDVCKCSFNTFRRRHHCRCCGRTLCHEHSS-DQMTL---PQF--GIHTNVRVCADCFNS 66 (296)
Q Consensus 3 ~~w~~~~~~~~C~~C~~~f~~~~r~hhCr~Cg~~~C~~c~~-~~~~~---~~~--~~~~~~rvC~~C~~~ 66 (296)
+.|.-+.++..|..|...|.++.|+|||+.||++||..|.. ..... +.+ -.....+.|..|+..
T Consensus 12 ~~~~~~~e~~s~~~~~~e~~~~~r~~~~~~~grv~~~q~~~~k~~rk~~q~r~~~l~~D~~~~~~~~~~~ 81 (288)
T KOG1729|consen 12 VDWQANSEANSCRNCKVEFCFGRRGHPCRECGRVLCRQGTLVKRCRKKLQSRSFFLFNDILVYGNIVSDN 81 (288)
T ss_pred HHHHHhccchhhhhhcccchhhhccCcccccchhhhhhhhhHHHHhcccccccccccccchhhcccccCH
Confidence 46888999999999999999999999999999999999987 11111 111 124456777777765
No 138
>KOG0993 consensus Rab5 GTPase effector Rabaptin-5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.20 E-value=0.0013 Score=59.12 Aligned_cols=67 Identities=16% Similarity=0.335 Sum_probs=57.5
Q ss_pred CCCCCCcccccccccccccccccccccccc--ccceEcCCCCCCceecCCCCCCCceeccccchhhhcccC
Q 022481 3 IEPPAFQEATRCDVCKCSFNTFRRRHHCRC--CGRTLCHEHSSDQMTLPQFGIHTNVRVCADCFNSSSRTG 71 (296)
Q Consensus 3 ~~w~~~~~~~~C~~C~~~f~~~~r~hhCr~--Cg~~~C~~c~~~~~~~~~~~~~~~~rvC~~C~~~~~~~~ 71 (296)
+.|.-+.++..|..|-.+|..++-+-||-+ |++|||-+|+.. .+|......+.+||+-|+..+.+..
T Consensus 460 le~ql~~~ve~c~~~~aS~~slk~e~erl~qq~eqi~~~~~~Ka--tvp~l~~e~~akv~rlq~eL~~seq 528 (542)
T KOG0993|consen 460 LEWQLDDDVEQCSNCDASFASLKVEPERLHQQCEQIFCMNCLKA--TVPSLPNERPAKVCRLQHELLNSEQ 528 (542)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhHHHh--hcccccccchHHHHHHHHHHhhhcc
Confidence 568888899999999999999998888887 999999999864 5567766789999999999886553
No 139
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=93.66 E-value=0.011 Score=37.66 Aligned_cols=30 Identities=23% Similarity=0.528 Sum_probs=19.7
Q ss_pred cccccccccccc------ccccccccccceEcCCCC
Q 022481 13 RCDVCKCSFNTF------RRRHHCRCCGRTLCHEHS 42 (296)
Q Consensus 13 ~C~~C~~~f~~~------~r~hhCr~Cg~~~C~~c~ 42 (296)
.|..|+++|... ..++.|..|+++||.+|=
T Consensus 1 ~CfgC~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD 36 (51)
T PF07975_consen 1 YCFGCQKPFPDGPEKKADSSRYRCPKCKNHFCIDCD 36 (51)
T ss_dssp EETTTTEE-TTS-------EEE--TTTT--B-HHHH
T ss_pred CCccCCCCCCCcccccccCCeEECCCCCCccccCcC
Confidence 488999999875 368999999999999884
No 140
>KOG1841 consensus Smad anchor for receptor activation [Defense mechanisms]
Probab=93.50 E-value=0.17 Score=51.48 Aligned_cols=55 Identities=20% Similarity=0.140 Sum_probs=45.6
Q ss_pred CCCCCCCccccccccccccccccccccccccccceEcCCCCCCceecCCCCCCCceeccccchhhhcc
Q 022481 2 SIEPPAFQEATRCDVCKCSFNTFRRRHHCRCCGRTLCHEHSSDQMTLPQFGIHTNVRVCADCFNSSSR 69 (296)
Q Consensus 2 ~~~w~~~~~~~~C~~C~~~f~~~~r~hhCr~Cg~~~C~~c~~~~~~~~~~~~~~~~rvC~~C~~~~~~ 69 (296)
+-.|.+|.-+..|+.|.+.|.++.+||||| |.++ +... ..+..|+|..|...+..
T Consensus 648 ksVw~aDg~aPng~la~t~~~~~~e~~hsr--~~ls----------~~~~-s~~~~~~~n~t~s~~rn 702 (1287)
T KOG1841|consen 648 KSVWFADGIAPNGELAETRFTFTGERHHSR--GKLS----------LLYS-SRKEARPCNITHSVLRN 702 (1287)
T ss_pred cceeccCCcCCCceecccceeeeccccccc--cccc----------cccc-ccccCCCCcccCccchh
Confidence 457999999999999999999999999999 8887 1122 24678999999988765
No 141
>KOG3576 consensus Ovo and related transcription factors [Transcription]
Probab=92.18 E-value=0.027 Score=46.35 Aligned_cols=32 Identities=31% Similarity=0.716 Sum_probs=25.1
Q ss_pred CCcccccccccccccccc---c---------cccccccccceEc
Q 022481 7 AFQEATRCDVCKCSFNTF---R---------RRHHCRCCGRTLC 38 (296)
Q Consensus 7 ~~~~~~~C~~C~~~f~~~---~---------r~hhCr~Cg~~~C 38 (296)
++.+.-.|.+|+|.|++- + |||-|+.||+-|=
T Consensus 113 sd~d~ftCrvCgK~F~lQRmlnrh~kch~~vkr~lct~cgkgfn 156 (267)
T KOG3576|consen 113 SDQDSFTCRVCGKKFGLQRMLNRHLKCHSDVKRHLCTFCGKGFN 156 (267)
T ss_pred CCCCeeeeehhhhhhhHHHHHHHHhhhccHHHHHHHhhccCccc
Confidence 456677899999999843 2 6888999998873
No 142
>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].
Probab=91.83 E-value=0.38 Score=33.45 Aligned_cols=47 Identities=23% Similarity=0.248 Sum_probs=39.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHC
Q 022481 200 EGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMES 253 (296)
Q Consensus 200 t~Lh~A~~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~iv~~LL~~ 253 (296)
.-|..|+..|+.++++.+++.+ .++ ...|..|+..-+.+++++|++.
T Consensus 8 ~tl~~Ai~GGN~eII~~c~~~~-~~~------~~~l~~AI~~H~n~i~~~l~~~ 54 (76)
T PF11929_consen 8 KTLEYAIIGGNFEIINICLKKN-KPD------NDCLEYAIKSHNNEIADWLIEN 54 (76)
T ss_pred HHHHHHHhCCCHHHHHHHHHHh-ccH------HHHHHHHHHHhhHHHHHHHHHh
Confidence 3689999999999999999765 222 3579999999999999999986
No 143
>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].
Probab=91.72 E-value=0.25 Score=34.35 Aligned_cols=48 Identities=17% Similarity=0.143 Sum_probs=40.4
Q ss_pred CcHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHhhHhhhcCcHHHHHHHHHc
Q 022481 232 MSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEED 286 (296)
Q Consensus 232 ~TpLh~A~~~g~~~iv~~LL~~ga~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ 286 (296)
..-|..|+..|+.++++.+++.+ .++ ...|..|+...+.+++++|+++
T Consensus 7 ~~tl~~Ai~GGN~eII~~c~~~~-~~~------~~~l~~AI~~H~n~i~~~l~~~ 54 (76)
T PF11929_consen 7 KKTLEYAIIGGNFEIINICLKKN-KPD------NDCLEYAIKSHNNEIADWLIEN 54 (76)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHh-ccH------HHHHHHHHHHhhHHHHHHHHHh
Confidence 35688999999999999999765 222 3579999999999999999986
No 144
>PRK00464 nrdR transcriptional regulator NrdR; Validated
Probab=91.33 E-value=0.085 Score=42.13 Aligned_cols=26 Identities=35% Similarity=0.892 Sum_probs=19.9
Q ss_pred ccccccccccc------------ccccccccccccceE
Q 022481 12 TRCDVCKCSFN------------TFRRRHHCRCCGRTL 37 (296)
Q Consensus 12 ~~C~~C~~~f~------------~~~r~hhCr~Cg~~~ 37 (296)
..|..|+.+++ ..+|+++|+.||..|
T Consensus 1 m~cp~c~~~~~~~~~s~~~~~~~~~~~~~~c~~c~~~f 38 (154)
T PRK00464 1 MRCPFCGHPDTRVIDSRPAEDGNAIRRRRECLACGKRF 38 (154)
T ss_pred CcCCCCCCCCCEeEeccccCCCCceeeeeeccccCCcc
Confidence 36899998772 355779999998877
No 145
>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC. The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].
Probab=90.88 E-value=0.5 Score=39.91 Aligned_cols=55 Identities=18% Similarity=0.311 Sum_probs=43.9
Q ss_pred HHHHHHc--CCHHHHHHHHHcC-CCCccc---CCCCCcHHHHHHHcCCHHHHHHHHHCCCC
Q 022481 202 LRDAIKN--GDAAAVKKLLSEG-VDANFC---DKQGMSLLHLAALFNRTDIAFILMESGAN 256 (296)
Q Consensus 202 Lh~A~~~--g~~~~v~~Ll~~g-advn~~---d~~g~TpLh~A~~~g~~~iv~~LL~~ga~ 256 (296)
+-|+... .+..+++..|.+| +++|.+ -..|.|-|.-|..+++.+++.+||++||-
T Consensus 219 ieY~LS~h~a~~kvL~~Fi~~Glv~vN~~F~~~NSGdtMLDNA~Ky~~~emi~~Llk~GA~ 279 (284)
T PF06128_consen 219 IEYLLSEHSASYKVLEYFINRGLVDVNKKFQKVNSGDTMLDNAMKYKNSEMIAFLLKYGAI 279 (284)
T ss_pred HHHHHhhcCCcHHHHHHHHhccccccchhhhccCCcchHHHhHHhcCcHHHHHHHHHcCcc
Confidence 4444433 4677888888887 677753 46799999999999999999999999984
No 146
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=90.38 E-value=0.042 Score=47.62 Aligned_cols=53 Identities=21% Similarity=0.585 Sum_probs=44.1
Q ss_pred CCCccccccccccccccccccccccccccceEcCCCCCCceecCCCCCCCceeccccchhhh
Q 022481 6 PAFQEATRCDVCKCSFNTFRRRHHCRCCGRTLCHEHSSDQMTLPQFGIHTNVRVCADCFNSS 67 (296)
Q Consensus 6 ~~~~~~~~C~~C~~~f~~~~r~hhCr~Cg~~~C~~c~~~~~~~~~~~~~~~~rvC~~C~~~~ 67 (296)
.+-..+.+|..|+..|.-+.+||-|--|-+-||..|+.. ....|.|..|...-
T Consensus 39 s~~~~~p~ckacg~~f~~~~~k~~c~dckk~fc~tcs~v---------~~~lr~c~~c~r~~ 91 (350)
T KOG4275|consen 39 SSSSQAPHCKACGEEFEDAQSKSDCEDCKKEFCATCSRV---------SISLRTCTSCRRVN 91 (350)
T ss_pred CcccccchhhhhchhHhhhhhhhhhhhhhHHHHHHHHHh---------cccchhhhHHHHHH
Confidence 445567799999999999999999999999999999932 24578899998653
No 147
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=89.29 E-value=0.21 Score=37.38 Aligned_cols=31 Identities=19% Similarity=0.588 Sum_probs=23.5
Q ss_pred CCccccccccccccccccccc-cccccccceE
Q 022481 7 AFQEATRCDVCKCSFNTFRRR-HHCRCCGRTL 37 (296)
Q Consensus 7 ~~~~~~~C~~C~~~f~~~~r~-hhCr~Cg~~~ 37 (296)
.|-.-..|..|+++|-=|+|. .+|.+||.+|
T Consensus 5 elGtKR~Cp~CG~kFYDLnk~PivCP~CG~~~ 36 (108)
T PF09538_consen 5 ELGTKRTCPSCGAKFYDLNKDPIVCPKCGTEF 36 (108)
T ss_pred ccCCcccCCCCcchhccCCCCCccCCCCCCcc
Confidence 455567899999999977664 4488888776
No 148
>smart00154 ZnF_AN1 AN1-like Zinc finger. Zinc finger at the C-terminus of An1, a ubiquitin-like protein in Xenopus laevis.
Probab=88.72 E-value=0.24 Score=29.74 Aligned_cols=26 Identities=35% Similarity=0.944 Sum_probs=19.6
Q ss_pred cccccccccccccccccccccceEcCCC
Q 022481 14 CDVCKCSFNTFRRRHHCRCCGRTLCHEH 41 (296)
Q Consensus 14 C~~C~~~f~~~~r~hhCr~Cg~~~C~~c 41 (296)
|..|++.-.++ -..|+.||.+||...
T Consensus 1 C~~C~~~~~l~--~f~C~~C~~~FC~~H 26 (39)
T smart00154 1 CHFCRKKVGLT--GFKCRHCGNLFCGEH 26 (39)
T ss_pred CcccCCccccc--CeECCccCCcccccc
Confidence 56787754444 678999999998765
No 149
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=88.50 E-value=0.23 Score=29.23 Aligned_cols=25 Identities=24% Similarity=0.761 Sum_probs=18.8
Q ss_pred cccccccccccc-------ccccccccccceE
Q 022481 13 RCDVCKCSFNTF-------RRRHHCRCCGRTL 37 (296)
Q Consensus 13 ~C~~C~~~f~~~-------~r~hhCr~Cg~~~ 37 (296)
.|..|+++|.+- .++-.|..||.+|
T Consensus 4 ~Cp~C~~~y~i~d~~ip~~g~~v~C~~C~~~f 35 (36)
T PF13717_consen 4 TCPNCQAKYEIDDEKIPPKGRKVRCSKCGHVF 35 (36)
T ss_pred ECCCCCCEEeCCHHHCCCCCcEEECCCCCCEe
Confidence 588888888743 2678888888876
No 150
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=88.04 E-value=0.31 Score=33.19 Aligned_cols=57 Identities=19% Similarity=0.474 Sum_probs=33.2
Q ss_pred ccccccccccccccccccccccce-----EcCCCCCCceecCCCCCCCceeccccchhhhcccC
Q 022481 13 RCDVCKCSFNTFRRRHHCRCCGRT-----LCHEHSSDQMTLPQFGIHTNVRVCADCFNSSSRTG 71 (296)
Q Consensus 13 ~C~~C~~~f~~~~r~hhCr~Cg~~-----~C~~c~~~~~~~~~~~~~~~~rvC~~C~~~~~~~~ 71 (296)
.|..|+........+.||..|+.- +|.+|-..-..|..=| ----.|..|+..+++.+
T Consensus 3 ~CP~C~~~L~~~~~~~~C~~C~~~~~~~a~CPdC~~~Le~LkACG--AvdYFC~~c~gLiSKkr 64 (70)
T PF07191_consen 3 TCPKCQQELEWQGGHYHCEACQKDYKKEAFCPDCGQPLEVLKACG--AVDYFCNHCHGLISKKR 64 (70)
T ss_dssp B-SSS-SBEEEETTEEEETTT--EEEEEEE-TTT-SB-EEEEETT--EEEEE-TTTT-EE-TTT
T ss_pred cCCCCCCccEEeCCEEECccccccceecccCCCcccHHHHHHHhc--ccceeeccCCceeecce
Confidence 688999998887889999999865 6888876544443333 23467888888776553
No 151
>TIGR02300 FYDLN_acid conserved hypothetical protein TIGR02300. Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=87.88 E-value=0.29 Score=37.33 Aligned_cols=31 Identities=13% Similarity=0.226 Sum_probs=22.8
Q ss_pred CCccccccccccccccccc-cccccccccceE
Q 022481 7 AFQEATRCDVCKCSFNTFR-RRHHCRCCGRTL 37 (296)
Q Consensus 7 ~~~~~~~C~~C~~~f~~~~-r~hhCr~Cg~~~ 37 (296)
.|-....|+.|+++|--++ +-.+|.+||..|
T Consensus 5 elGtKr~Cp~cg~kFYDLnk~p~vcP~cg~~~ 36 (129)
T TIGR02300 5 DLGTKRICPNTGSKFYDLNRRPAVSPYTGEQF 36 (129)
T ss_pred hhCccccCCCcCccccccCCCCccCCCcCCcc
Confidence 4455678999999998554 556777777765
No 152
>PHA02768 hypothetical protein; Provisional
Probab=86.78 E-value=0.25 Score=32.01 Aligned_cols=26 Identities=23% Similarity=0.549 Sum_probs=17.9
Q ss_pred cccccccccccccc------ccc----ccccccceE
Q 022481 12 TRCDVCKCSFNTFR------RRH----HCRCCGRTL 37 (296)
Q Consensus 12 ~~C~~C~~~f~~~~------r~h----hCr~Cg~~~ 37 (296)
-.|..|++.|+... |+| .|-.||++|
T Consensus 6 y~C~~CGK~Fs~~~~L~~H~r~H~k~~kc~~C~k~f 41 (55)
T PHA02768 6 YECPICGEIYIKRKSMITHLRKHNTNLKLSNCKRIS 41 (55)
T ss_pred cCcchhCCeeccHHHHHHHHHhcCCcccCCccccee
Confidence 37999999998431 334 477777766
No 153
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=86.39 E-value=0.37 Score=28.51 Aligned_cols=25 Identities=28% Similarity=0.769 Sum_probs=19.0
Q ss_pred cccccccccccc-------ccccccccccceE
Q 022481 13 RCDVCKCSFNTF-------RRRHHCRCCGRTL 37 (296)
Q Consensus 13 ~C~~C~~~f~~~-------~r~hhCr~Cg~~~ 37 (296)
.|..|+..|.+- .++..|..||.+|
T Consensus 4 ~CP~C~~~f~v~~~~l~~~~~~vrC~~C~~~f 35 (37)
T PF13719_consen 4 TCPNCQTRFRVPDDKLPAGGRKVRCPKCGHVF 35 (37)
T ss_pred ECCCCCceEEcCHHHcccCCcEEECCCCCcEe
Confidence 688888888743 3678888888876
No 154
>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses. These proteins may be involved in promoting survival of infected macrophages [].
Probab=86.28 E-value=1.5 Score=35.82 Aligned_cols=79 Identities=18% Similarity=0.027 Sum_probs=51.7
Q ss_pred HHHHHHHcCCHHHH----HHHHHcCCCCcccCC--CCCcHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHhhHhhhc
Q 022481 201 GLRDAIKNGDAAAV----KKLLSEGVDANFCDK--QGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCAPVT 274 (296)
Q Consensus 201 ~Lh~A~~~g~~~~v----~~Ll~~gadvn~~d~--~g~TpLh~A~~~g~~~iv~~LL~~ga~~~~~d~~g~TpL~~A~~~ 274 (296)
-+-.|....++++. ++++++...-+..|. --..-|.+|+..|-...+.-.|++|.+++. ++|-.|+..
T Consensus 107 iFdIA~~~kDlsLyslGY~l~~~~~~~~~~~d~~~ll~~hl~~a~~kgll~F~letlkygg~~~~------~vls~Av~y 180 (192)
T PF03158_consen 107 IFDIAFAKKDLSLYSLGYKLLFNRMMSEHNEDPTSLLTQHLEKAAAKGLLPFVLETLKYGGNVDI------IVLSQAVKY 180 (192)
T ss_pred hhhhhhhccchhHHHHHHHHHHhhcccccccCHHHHHHHHHHHHHHCCCHHHHHHHHHcCCcccH------HHHHHHHHh
Confidence 46677777777643 223344322211111 112456778888888888888888887774 788888888
Q ss_pred CcHHHHHHHHH
Q 022481 275 LQYKMRQKMEE 285 (296)
Q Consensus 275 g~~~iv~~Ll~ 285 (296)
++..|+.+++.
T Consensus 181 nhRkIL~yfi~ 191 (192)
T PF03158_consen 181 NHRKILDYFIR 191 (192)
T ss_pred hHHHHHHHhhc
Confidence 88888888764
No 155
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=84.31 E-value=0.17 Score=31.12 Aligned_cols=33 Identities=21% Similarity=0.611 Sum_probs=24.0
Q ss_pred ccccccccccccccccccccccceEcCCCCCCce
Q 022481 13 RCDVCKCSFNTFRRRHHCRCCGRTLCHEHSSDQM 46 (296)
Q Consensus 13 ~C~~C~~~f~~~~r~hhCr~Cg~~~C~~c~~~~~ 46 (296)
+|.+|.+.| .-.++-.=-.||.+||..|.....
T Consensus 1 ~C~~C~~~~-~~~~~~~l~~CgH~~C~~C~~~~~ 33 (44)
T PF14634_consen 1 HCNICFEKY-SEERRPRLTSCGHIFCEKCLKKLK 33 (44)
T ss_pred CCcCcCccc-cCCCCeEEcccCCHHHHHHHHhhc
Confidence 478888888 223445556899999999987644
No 156
>COG5151 SSL1 RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription / DNA replication, recombination, and repair]
Probab=81.00 E-value=0.75 Score=40.43 Aligned_cols=41 Identities=27% Similarity=0.532 Sum_probs=33.0
Q ss_pred CCCCCCcccccccccccccc----------ccccccccccccceEcCCCCC
Q 022481 3 IEPPAFQEATRCDVCKCSFN----------TFRRRHHCRCCGRTLCHEHSS 43 (296)
Q Consensus 3 ~~w~~~~~~~~C~~C~~~f~----------~~~r~hhCr~Cg~~~C~~c~~ 43 (296)
++|-..-....|..|+-+|- +...|+.|..|-.-||.+|-.
T Consensus 354 ~p~~~~~ks~~Cf~CQ~~fp~~~~~~~~~~~ss~rY~Ce~CK~~FC~dCdv 404 (421)
T COG5151 354 KPEGTNPKSTHCFVCQGPFPKPPVSPFDESTSSGRYQCELCKSTFCSDCDV 404 (421)
T ss_pred ccCCCCCCCccceeccCCCCCCCCCcccccccccceechhhhhhhhhhhHH
Confidence 45666667789999999875 235799999999999999953
No 157
>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional
Probab=79.80 E-value=1.1 Score=27.79 Aligned_cols=26 Identities=19% Similarity=0.498 Sum_probs=17.7
Q ss_pred ccccccccccccccc--ccccccccceE
Q 022481 12 TRCDVCKCSFNTFRR--RHHCRCCGRTL 37 (296)
Q Consensus 12 ~~C~~C~~~f~~~~r--~hhCr~Cg~~~ 37 (296)
-.|..|+..|.+..+ ..+|..||.-+
T Consensus 4 y~C~~CG~~~~~~~~~~~~~Cp~CG~~~ 31 (46)
T PRK00398 4 YKCARCGREVELDEYGTGVRCPYCGYRI 31 (46)
T ss_pred EECCCCCCEEEECCCCCceECCCCCCeE
Confidence 368888888875544 47777777543
No 158
>KOG3173 consensus Predicted Zn-finger protein [General function prediction only]
Probab=79.72 E-value=0.9 Score=36.83 Aligned_cols=28 Identities=36% Similarity=0.866 Sum_probs=23.7
Q ss_pred ccccccccccccccccccccccccceEcCCC
Q 022481 11 ATRCDVCKCSFNTFRRRHHCRCCGRTLCHEH 41 (296)
Q Consensus 11 ~~~C~~C~~~f~~~~r~hhCr~Cg~~~C~~c 41 (296)
...|..|+++-++.- .||| ||.+||..+
T Consensus 105 ~~rC~~C~kk~gltg--f~Cr-CG~~fC~~H 132 (167)
T KOG3173|consen 105 KKRCFKCRKKVGLTG--FKCR-CGNTFCGTH 132 (167)
T ss_pred chhhhhhhhhhcccc--cccc-cCCcccccc
Confidence 467999999888886 9997 899998765
No 159
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=79.54 E-value=0.24 Score=40.04 Aligned_cols=50 Identities=20% Similarity=0.543 Sum_probs=34.7
Q ss_pred cccccccccccccccccc-ccccccceEcCCCCCCceecCCCCCCCceeccccchhhhcccC
Q 022481 11 ATRCDVCKCSFNTFRRRH-HCRCCGRTLCHEHSSDQMTLPQFGIHTNVRVCADCFNSSSRTG 71 (296)
Q Consensus 11 ~~~C~~C~~~f~~~~r~h-hCr~Cg~~~C~~c~~~~~~~~~~~~~~~~rvC~~C~~~~~~~~ 71 (296)
.-.|.+|-..|+- |. ---.||+|||..|...-+ +..++|-.|..++....
T Consensus 131 ~~~CPiCl~~~se---k~~vsTkCGHvFC~~Cik~al--------k~~~~CP~C~kkIt~k~ 181 (187)
T KOG0320|consen 131 TYKCPICLDSVSE---KVPVSTKCGHVFCSQCIKDAL--------KNTNKCPTCRKKITHKQ 181 (187)
T ss_pred ccCCCceecchhh---ccccccccchhHHHHHHHHHH--------HhCCCCCCcccccchhh
Confidence 3567777766652 22 346799999999976532 45788999998776543
No 160
>PF12773 DZR: Double zinc ribbon
Probab=79.05 E-value=1.3 Score=27.92 Aligned_cols=29 Identities=21% Similarity=0.501 Sum_probs=18.2
Q ss_pred Ccccccccccccccc-ccccccccccccce
Q 022481 8 FQEATRCDVCKCSFN-TFRRRHHCRCCGRT 36 (296)
Q Consensus 8 ~~~~~~C~~C~~~f~-~~~r~hhCr~Cg~~ 36 (296)
..++..|..|+.++. .......|..||..
T Consensus 9 ~~~~~fC~~CG~~l~~~~~~~~~C~~Cg~~ 38 (50)
T PF12773_consen 9 PDDAKFCPHCGTPLPPPDQSKKICPNCGAE 38 (50)
T ss_pred CccccCChhhcCChhhccCCCCCCcCCcCC
Confidence 345777888888776 23345566666653
No 161
>KOG3799 consensus Rab3 effector RIM1 and related proteins, contain Rab3a binding domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=78.44 E-value=0.86 Score=34.97 Aligned_cols=53 Identities=21% Similarity=0.567 Sum_probs=39.3
Q ss_pred ccccccccccc-cccccccccccccccceEcCCCCCCceecCCCCCCCceeccccchhh
Q 022481 9 QEATRCDVCKC-SFNTFRRRHHCRCCGRTLCHEHSSDQMTLPQFGIHTNVRVCADCFNS 66 (296)
Q Consensus 9 ~~~~~C~~C~~-~f~~~~r~hhCr~Cg~~~C~~c~~~~~~~~~~~~~~~~rvC~~C~~~ 66 (296)
.+...|.+|.| +|---- -|.|.+|.--||++|... +.+.. ++-..||..|-..
T Consensus 63 ~ddatC~IC~KTKFADG~-GH~C~YCq~r~CARCGGr-v~lrs---NKv~wvcnlc~k~ 116 (169)
T KOG3799|consen 63 GDDATCGICHKTKFADGC-GHNCSYCQTRFCARCGGR-VSLRS---NKVMWVCNLCRKQ 116 (169)
T ss_pred CcCcchhhhhhccccccc-CcccchhhhhHHHhcCCe-eeecc---CceEEeccCCcHH
Confidence 45678999998 565322 599999999999999854 34322 4677899999754
No 162
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=77.91 E-value=0.53 Score=28.81 Aligned_cols=34 Identities=15% Similarity=0.402 Sum_probs=24.8
Q ss_pred cccccccccccccccccccccccceEcCCCCCCce
Q 022481 12 TRCDVCKCSFNTFRRRHHCRCCGRTLCHEHSSDQM 46 (296)
Q Consensus 12 ~~C~~C~~~f~~~~r~hhCr~Cg~~~C~~c~~~~~ 46 (296)
+.|.+|...|..-..-.-.. ||.+||..|...++
T Consensus 1 d~C~IC~~~~~~~~~~~~l~-C~H~fh~~Ci~~~~ 34 (44)
T PF13639_consen 1 DECPICLEEFEDGEKVVKLP-CGHVFHRSCIKEWL 34 (44)
T ss_dssp -CETTTTCBHHTTSCEEEET-TSEEEEHHHHHHHH
T ss_pred CCCcCCChhhcCCCeEEEcc-CCCeeCHHHHHHHH
Confidence 36999999997644444444 99999999976654
No 163
>PF03107 C1_2: C1 domain; InterPro: IPR004146 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in DAG_PE-bind (IPR002219 from INTERPRO), therefore we have termed this domain DC1 for divergent C1 domain. This domain probably also binds to two zinc ions. The function of proteins with this domain is uncertain, however this domain may bind to molecules such as diacylglycerol. This family are found in plant proteins.
Probab=77.90 E-value=1.7 Score=24.28 Aligned_cols=29 Identities=34% Similarity=0.644 Sum_probs=23.9
Q ss_pred ccccccccccccccccccccccceEcCCCC
Q 022481 13 RCDVCKCSFNTFRRRHHCRCCGRTLCHEHS 42 (296)
Q Consensus 13 ~C~~C~~~f~~~~r~hhCr~Cg~~~C~~c~ 42 (296)
.|.+|++...-+. -++|..|+..+...|.
T Consensus 2 ~C~~C~~~~~~~~-~Y~C~~c~f~lh~~Ca 30 (30)
T PF03107_consen 2 WCDVCRRKIDGFY-FYHCSECCFTLHVRCA 30 (30)
T ss_pred CCCCCCCCcCCCE-eEEeCCCCCeEcCccC
Confidence 5889999888776 8999999988877763
No 164
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=77.73 E-value=0.58 Score=43.96 Aligned_cols=52 Identities=15% Similarity=0.307 Sum_probs=39.8
Q ss_pred ccccccccccccccccccccccccceEcCCCCCCceecCCCCCCCceeccccchhhhcc
Q 022481 11 ATRCDVCKCSFNTFRRRHHCRCCGRTLCHEHSSDQMTLPQFGIHTNVRVCADCFNSSSR 69 (296)
Q Consensus 11 ~~~C~~C~~~f~~~~r~hhCr~Cg~~~C~~c~~~~~~~~~~~~~~~~rvC~~C~~~~~~ 69 (296)
-..|.+|-.++.+-.|- .||+|||..|.-+..... ..+.-+-|.-|+..+..
T Consensus 186 ~~~CPICL~~~~~p~~t----~CGHiFC~~CiLqy~~~s---~~~~~~~CPiC~s~I~~ 237 (513)
T KOG2164|consen 186 DMQCPICLEPPSVPVRT----NCGHIFCGPCILQYWNYS---AIKGPCSCPICRSTITL 237 (513)
T ss_pred CCcCCcccCCCCccccc----ccCceeeHHHHHHHHhhh---cccCCccCCchhhhccc
Confidence 46899999988765443 399999999987665443 34667889999998865
No 165
>PF07282 OrfB_Zn_ribbon: Putative transposase DNA-binding domain; InterPro: IPR010095 This entry represents a region of a sequence similarity between a family of putative transposases of Thermoanaerobacter tengcongensis, smaller related proteins from Bacillus anthracis, putative transposes described by IPR001959 from INTERPRO, and other proteins. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=77.17 E-value=1.8 Score=29.30 Aligned_cols=31 Identities=19% Similarity=0.401 Sum_probs=24.3
Q ss_pred CCccccccccccccccc--cccccccccccceE
Q 022481 7 AFQEATRCDVCKCSFNT--FRRRHHCRCCGRTL 37 (296)
Q Consensus 7 ~~~~~~~C~~C~~~f~~--~~r~hhCr~Cg~~~ 37 (296)
+....+.|..|+..-.. -.|.+.|..||..+
T Consensus 24 ~~~TSq~C~~CG~~~~~~~~~r~~~C~~Cg~~~ 56 (69)
T PF07282_consen 24 EAYTSQTCPRCGHRNKKRRSGRVFTCPNCGFEM 56 (69)
T ss_pred CCCCccCccCcccccccccccceEEcCCCCCEE
Confidence 34467889999986554 67899999999875
No 166
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=77.09 E-value=2.2 Score=38.09 Aligned_cols=61 Identities=20% Similarity=0.400 Sum_probs=40.6
Q ss_pred ccccccccccc--cccc-------cccccccccc------ceEcCCCCCCc-eecCCCC---CCCceeccccchhhhccc
Q 022481 10 EATRCDVCKCS--FNTF-------RRRHHCRCCG------RTLCHEHSSDQ-MTLPQFG---IHTNVRVCADCFNSSSRT 70 (296)
Q Consensus 10 ~~~~C~~C~~~--f~~~-------~r~hhCr~Cg------~~~C~~c~~~~-~~~~~~~---~~~~~rvC~~C~~~~~~~ 70 (296)
....|.+|+.. .+.+ .|..||-.|+ ++-|..|-..+ +...... ....+-+|..|...++..
T Consensus 186 ~~~~CPvCGs~P~~s~v~~~~~~G~RyL~CslC~teW~~~R~~C~~Cg~~~~l~y~~~~~~~~~~r~e~C~~C~~YlK~~ 265 (309)
T PRK03564 186 QRQFCPVCGSMPVSSVVQIGTTQGLRYLHCNLCESEWHVVRVKCSNCEQSGKLHYWSLDSEQAAVKAESCGDCGTYLKIL 265 (309)
T ss_pred CCCCCCCCCCcchhheeeccCCCCceEEEcCCCCCcccccCccCCCCCCCCceeeeeecCCCcceEeeecccccccceec
Confidence 46899999985 3432 3788999998 46788887643 2211111 123557899999988765
No 167
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=76.93 E-value=1.1 Score=24.21 Aligned_cols=23 Identities=22% Similarity=0.632 Sum_probs=13.7
Q ss_pred ccccccccccccccccccccccceE
Q 022481 13 RCDVCKCSFNTFRRRHHCRCCGRTL 37 (296)
Q Consensus 13 ~C~~C~~~f~~~~r~hhCr~Cg~~~ 37 (296)
.|..|++...... .-|..||..|
T Consensus 2 ~CP~C~~~V~~~~--~~Cp~CG~~F 24 (26)
T PF10571_consen 2 TCPECGAEVPESA--KFCPHCGYDF 24 (26)
T ss_pred cCCCCcCCchhhc--CcCCCCCCCC
Confidence 5666766655443 3467777665
No 168
>PF01485 IBR: IBR domain; InterPro: IPR002867 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a cysteine-rich (C6HC) zinc finger domain that is present in Triad1, and which is conserved in other proteins encoded by various eukaryotes. The C6HC consensus pattern is: C-x(4)-C-x(14-30)-C-x(1-4)-C-x(4)-C-x(2)-C-x(4)-H-x(4)-C The C6HC zinc finger motif is the fourth family member of the zinc-binding RING, LIM, and LAP/PHD fingers. Strikingly, in most of the proteins the C6HC domain is flanked by two RING finger structures IPR001841 from INTERPRO. The novel C6HC motif has been called DRIL (double RING finger linked). The strong conservation of the larger tripartite TRIAD (twoRING fingers and DRIL) structure indicates that the three subdomains are functionally linked and identifies a novel class of proteins []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CT7_A 1WD2_A 2JMO_A 1WIM_A.
Probab=76.48 E-value=2.1 Score=28.14 Aligned_cols=35 Identities=17% Similarity=0.482 Sum_probs=21.2
Q ss_pred ccccccc--cccccccccc----ccccccccceEcCCCCCC
Q 022481 10 EATRCDV--CKCSFNTFRR----RHHCRCCGRTLCHEHSSD 44 (296)
Q Consensus 10 ~~~~C~~--C~~~f~~~~r----~hhCr~Cg~~~C~~c~~~ 44 (296)
+...|.. |+..|..-.. ...|..||..||..|...
T Consensus 17 ~~~~Cp~~~C~~~~~~~~~~~~~~~~C~~C~~~fC~~C~~~ 57 (64)
T PF01485_consen 17 NIRWCPNPDCEYIIEKDDGCNSPIVTCPSCGTEFCFKCGEP 57 (64)
T ss_dssp -CC--TTSST---ECS-SSTTS--CCTTSCCSEECSSSTSE
T ss_pred CccCCCCCCCcccEEecCCCCCCeeECCCCCCcCccccCcc
Confidence 4468876 9988774432 268999999999999754
No 169
>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses. These proteins may be involved in promoting survival of infected macrophages [].
Probab=75.73 E-value=4.8 Score=33.01 Aligned_cols=87 Identities=11% Similarity=-0.003 Sum_probs=48.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHH----HHHHHCCCCCCccCCC--CCCHhhHhhh
Q 022481 200 EGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIA----FILMESGANMDCKNAQ--GESPLDCAPV 273 (296)
Q Consensus 200 t~Lh~A~~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~iv----~~LL~~ga~~~~~d~~--g~TpL~~A~~ 273 (296)
+.+-.|+...+.++|+++-+. +.. .+-.+-.-.|....+.++. .+++++...-.-.|.. -.--|+.|+.
T Consensus 78 ~LFElAC~~qkydiV~WI~qn---L~i--~~~~~iFdIA~~~kDlsLyslGY~l~~~~~~~~~~~d~~~ll~~hl~~a~~ 152 (192)
T PF03158_consen 78 ELFELACEEQKYDIVKWIGQN---LHI--YNPEDIFDIAFAKKDLSLYSLGYKLLFNRMMSEHNEDPTSLLTQHLEKAAA 152 (192)
T ss_pred HHHHHHHHHccccHHHHHhhc---cCC--CCchhhhhhhhhccchhHHHHHHHHHHhhcccccccCHHHHHHHHHHHHHH
Confidence 356677878888888877332 111 1223455667666666643 2344442222111100 0124567788
Q ss_pred cCcHHHHHHHHHcCCCCC
Q 022481 274 TLQYKMRQKMEEDKNNVG 291 (296)
Q Consensus 274 ~g~~~iv~~Ll~~gadi~ 291 (296)
.|....+.-.|++|.+++
T Consensus 153 kgll~F~letlkygg~~~ 170 (192)
T PF03158_consen 153 KGLLPFVLETLKYGGNVD 170 (192)
T ss_pred CCCHHHHHHHHHcCCccc
Confidence 888888888888888776
No 170
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=73.13 E-value=0.36 Score=28.98 Aligned_cols=30 Identities=23% Similarity=0.551 Sum_probs=21.3
Q ss_pred ccccccccccccccccccccccceEcCCCCCCc
Q 022481 13 RCDVCKCSFNTFRRRHHCRCCGRTLCHEHSSDQ 45 (296)
Q Consensus 13 ~C~~C~~~f~~~~r~hhCr~Cg~~~C~~c~~~~ 45 (296)
.|.+|...| .....-..||..||..|....
T Consensus 1 ~C~iC~~~~---~~~~~~~~C~H~~c~~C~~~~ 30 (45)
T cd00162 1 ECPICLEEF---REPVVLLPCGHVFCRSCIDKW 30 (45)
T ss_pred CCCcCchhh---hCceEecCCCChhcHHHHHHH
Confidence 377887777 334445569999999997654
No 171
>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain. This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.
Probab=72.55 E-value=2.3 Score=25.05 Aligned_cols=11 Identities=45% Similarity=1.023 Sum_probs=7.0
Q ss_pred ccccccccccc
Q 022481 13 RCDVCKCSFNT 23 (296)
Q Consensus 13 ~C~~C~~~f~~ 23 (296)
.|..|++.|.+
T Consensus 4 ~CP~C~~~~~v 14 (38)
T TIGR02098 4 QCPNCKTSFRV 14 (38)
T ss_pred ECCCCCCEEEe
Confidence 46677776653
No 172
>PRK00432 30S ribosomal protein S27ae; Validated
Probab=70.81 E-value=2.8 Score=26.60 Aligned_cols=27 Identities=33% Similarity=0.642 Sum_probs=18.0
Q ss_pred cccccccccccc-ccccccccccccceE
Q 022481 11 ATRCDVCKCSFN-TFRRRHHCRCCGRTL 37 (296)
Q Consensus 11 ~~~C~~C~~~f~-~~~r~hhCr~Cg~~~ 37 (296)
...|..|+..|- .-..+++|..||..+
T Consensus 20 ~~fCP~Cg~~~m~~~~~r~~C~~Cgyt~ 47 (50)
T PRK00432 20 NKFCPRCGSGFMAEHLDRWHCGKCGYTE 47 (50)
T ss_pred cCcCcCCCcchheccCCcEECCCcCCEE
Confidence 457888887533 223577888888765
No 173
>PF15135 UPF0515: Uncharacterised protein UPF0515
Probab=69.91 E-value=2.7 Score=35.94 Aligned_cols=36 Identities=22% Similarity=0.602 Sum_probs=28.4
Q ss_pred CCCCCccccccccccccccccc-------cccccccccceEcC
Q 022481 4 EPPAFQEATRCDVCKCSFNTFR-------RRHHCRCCGRTLCH 39 (296)
Q Consensus 4 ~w~~~~~~~~C~~C~~~f~~~~-------r~hhCr~Cg~~~C~ 39 (296)
.|+.-.++..|..|.++|...- -.+||..||+.|=+
T Consensus 125 rvp~rKeVSRCr~C~~rYDPVP~dkmwG~aef~C~~C~h~F~G 167 (278)
T PF15135_consen 125 RVPQRKEVSRCRKCRKRYDPVPCDKMWGIAEFHCPKCRHNFRG 167 (278)
T ss_pred ccCcccccccccccccccCCCccccccceeeeecccccccchh
Confidence 3566678999999999987542 57899999999854
No 174
>PRK00420 hypothetical protein; Validated
Probab=68.73 E-value=3.1 Score=31.31 Aligned_cols=25 Identities=20% Similarity=0.531 Sum_probs=14.9
Q ss_pred cccccccccccccc-ccccccccccc
Q 022481 11 ATRCDVCKCSFNTF-RRRHHCRCCGR 35 (296)
Q Consensus 11 ~~~C~~C~~~f~~~-~r~hhCr~Cg~ 35 (296)
...|..|+.+|.-+ ..+..|..||.
T Consensus 23 ~~~CP~Cg~pLf~lk~g~~~Cp~Cg~ 48 (112)
T PRK00420 23 SKHCPVCGLPLFELKDGEVVCPVHGK 48 (112)
T ss_pred cCCCCCCCCcceecCCCceECCCCCC
Confidence 46899999876543 33444444444
No 175
>PF01927 Mut7-C: Mut7-C RNAse domain; InterPro: IPR002782 This prokaryotic family of proteins have no known function. The proteins contain four conserved cysteines that may be involved in metal binding or disulphide bridges.
Probab=68.72 E-value=3.6 Score=32.57 Aligned_cols=19 Identities=16% Similarity=0.253 Sum_probs=11.1
Q ss_pred CCCCccccccccccccccc
Q 022481 5 PPAFQEATRCDVCKCSFNT 23 (296)
Q Consensus 5 w~~~~~~~~C~~C~~~f~~ 23 (296)
+..+..-..|..|+..+..
T Consensus 85 ~~~~~~~sRC~~CN~~L~~ 103 (147)
T PF01927_consen 85 LRLDPIFSRCPKCNGPLRP 103 (147)
T ss_pred cccCCCCCccCCCCcEeee
Confidence 3334445677777776543
No 176
>TIGR02605 CxxC_CxxC_SSSS putative regulatory protein, FmdB family. This model represents a region of about 50 amino acids found in a number of small proteins in a wide range of bacteria. The region begins usually with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One member of this family is has been noted as a putative regulatory protein, designated FmdB (PubMed:8841393). Most members of this family have a C-terminal region containing highly degenerate sequence, such as SSTSESTKSSGSSGSSGSSESKASGSTEKSTSSTTAAAAV in Mycobacterium tuberculosis and VAVGGSAPAPSPAPRAGGGGGGCCGGGCCG in Streptomyces avermitilis. These low complexity regions, which are not included in the model, resemble low-complexity C-terminal regions of some heterocycle-containing bacteriocin precursors.
Probab=67.75 E-value=2.2 Score=27.09 Aligned_cols=13 Identities=31% Similarity=0.938 Sum_probs=8.8
Q ss_pred ccccccccccccc
Q 022481 13 RCDVCKCSFNTFR 25 (296)
Q Consensus 13 ~C~~C~~~f~~~~ 25 (296)
.|..|+..|..+.
T Consensus 7 ~C~~Cg~~fe~~~ 19 (52)
T TIGR02605 7 RCTACGHRFEVLQ 19 (52)
T ss_pred EeCCCCCEeEEEE
Confidence 5777777777654
No 177
>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B.
Probab=67.09 E-value=1.6 Score=23.36 Aligned_cols=12 Identities=33% Similarity=0.977 Sum_probs=9.6
Q ss_pred cccccccccccc
Q 022481 13 RCDVCKCSFNTF 24 (296)
Q Consensus 13 ~C~~C~~~f~~~ 24 (296)
.|..|++.|...
T Consensus 3 ~C~~C~~~F~~~ 14 (27)
T PF13912_consen 3 ECDECGKTFSSL 14 (27)
T ss_dssp EETTTTEEESSH
T ss_pred CCCccCCccCCh
Confidence 588999999844
No 178
>COG1773 Rubredoxin [Energy production and conversion]
Probab=66.14 E-value=2.9 Score=27.03 Aligned_cols=15 Identities=33% Similarity=0.758 Sum_probs=12.4
Q ss_pred cccccccccceEcCC
Q 022481 26 RRHHCRCCGRTLCHE 40 (296)
Q Consensus 26 r~hhCr~Cg~~~C~~ 40 (296)
+++.|+.||.||=..
T Consensus 2 ~~~~C~~CG~vYd~e 16 (55)
T COG1773 2 KRWRCSVCGYVYDPE 16 (55)
T ss_pred CceEecCCceEeccc
Confidence 489999999998543
No 179
>TIGR00100 hypA hydrogenase nickel insertion protein HypA. In Hpylori, hypA mutant abolished hydrogenase activity and decrease in urease activity. Nickel supplementation in media restored urease activity and partial hydrogenase activity. HypA probably involved in inserting Ni in enzymes.
Probab=65.91 E-value=2.9 Score=31.63 Aligned_cols=23 Identities=17% Similarity=0.416 Sum_probs=13.6
Q ss_pred ccccccccccccccccccccccc
Q 022481 12 TRCDVCKCSFNTFRRRHHCRCCG 34 (296)
Q Consensus 12 ~~C~~C~~~f~~~~r~hhCr~Cg 34 (296)
-.|..|++.|........|..||
T Consensus 71 ~~C~~Cg~~~~~~~~~~~CP~Cg 93 (115)
T TIGR00100 71 CECEDCSEEVSPEIDLYRCPKCH 93 (115)
T ss_pred EEcccCCCEEecCCcCccCcCCc
Confidence 46777777776654444455554
No 180
>PF04438 zf-HIT: HIT zinc finger; InterPro: IPR007529 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the HIT-type zinc finger, which contains 7 conserved cysteines and one histidine that can potentially coordinate two zinc atoms. It has been named after the first protein that originally defined the domain: the yeast HIT1 protein (P46973 from SWISSPROT) []. The HIT-type zinc finger displays some sequence similarities to the MYND-type zinc finger. The function of this domain is unknown but it is mainly found in nuclear proteins involved in gene regulation and chromatin remodeling. This domain is also found in the thyroid receptor interacting protein 3 (TRIP-3) Q15649 from SWISSPROT, that specifically interacts with the ligand binding domain of the thyroid receptor. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 2YQP_A 2YQQ_A 1X4S_A.
Probab=65.72 E-value=3.3 Score=23.23 Aligned_cols=23 Identities=30% Similarity=0.847 Sum_probs=15.4
Q ss_pred cccccccccccccccccccccccceEcC
Q 022481 12 TRCDVCKCSFNTFRRRHHCRCCGRTLCH 39 (296)
Q Consensus 12 ~~C~~C~~~f~~~~r~hhCr~Cg~~~C~ 39 (296)
..|.+|+. ..++.|..||..+|+
T Consensus 3 ~~C~vC~~-----~~kY~Cp~C~~~~CS 25 (30)
T PF04438_consen 3 KLCSVCGN-----PAKYRCPRCGARYCS 25 (30)
T ss_dssp EEETSSSS-----EESEE-TTT--EESS
T ss_pred CCCccCcC-----CCEEECCCcCCceeC
Confidence 46788876 347899999999986
No 181
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=65.23 E-value=1.7 Score=25.76 Aligned_cols=29 Identities=24% Similarity=0.602 Sum_probs=19.2
Q ss_pred cccccccccccccccccccccceEcCCCCCCc
Q 022481 14 CDVCKCSFNTFRRRHHCRCCGRTLCHEHSSDQ 45 (296)
Q Consensus 14 C~~C~~~f~~~~r~hhCr~Cg~~~C~~c~~~~ 45 (296)
|.+|...+ +.....-.||.+||..|....
T Consensus 1 C~iC~~~~---~~~~~~~~CGH~fC~~C~~~~ 29 (39)
T PF13923_consen 1 CPICLDEL---RDPVVVTPCGHSFCKECIEKY 29 (39)
T ss_dssp ETTTTSB----SSEEEECTTSEEEEHHHHHHH
T ss_pred CCCCCCcc---cCcCEECCCCCchhHHHHHHH
Confidence 45665433 335567889999999996554
No 182
>smart00647 IBR In Between Ring fingers. the domains occurs between pairs og RING fingers
Probab=65.21 E-value=6.2 Score=25.81 Aligned_cols=35 Identities=20% Similarity=0.474 Sum_probs=26.5
Q ss_pred cccccc--cccccccc----cccccccccccceEcCCCCCC
Q 022481 10 EATRCD--VCKCSFNT----FRRRHHCRCCGRTLCHEHSSD 44 (296)
Q Consensus 10 ~~~~C~--~C~~~f~~----~~r~hhCr~Cg~~~C~~c~~~ 44 (296)
....|. .|+..+.. ...+-.|..||..||..|...
T Consensus 17 ~~~~CP~~~C~~~~~~~~~~~~~~v~C~~C~~~fC~~C~~~ 57 (64)
T smart00647 17 DLKWCPAPDCSAAIIVTEEEGCNRVTCPKCGFSFCFRCKVP 57 (64)
T ss_pred CccCCCCCCCcceEEecCCCCCCeeECCCCCCeECCCCCCc
Confidence 455687 78775543 456889999999999999754
No 183
>COG1996 RPC10 DNA-directed RNA polymerase, subunit RPC10 (contains C4-type Zn-finger) [Transcription]
Probab=65.00 E-value=2.9 Score=26.34 Aligned_cols=24 Identities=25% Similarity=0.605 Sum_probs=16.0
Q ss_pred ccccccccccccc--ccccccccccc
Q 022481 12 TRCDVCKCSFNTF--RRRHHCRCCGR 35 (296)
Q Consensus 12 ~~C~~C~~~f~~~--~r~hhCr~Cg~ 35 (296)
-.|..|++.|.+. .+-..|..||.
T Consensus 7 Y~C~~Cg~~~~~~~~~~~irCp~Cg~ 32 (49)
T COG1996 7 YKCARCGREVELDQETRGIRCPYCGS 32 (49)
T ss_pred EEhhhcCCeeehhhccCceeCCCCCc
Confidence 4689999999754 34555665553
No 184
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=64.35 E-value=1.3 Score=36.65 Aligned_cols=56 Identities=14% Similarity=0.339 Sum_probs=36.6
Q ss_pred cccccccccccccccccccccccccceEcCCCCCCceecCC--------CCCCCceeccccchhhhcc
Q 022481 10 EATRCDVCKCSFNTFRRRHHCRCCGRTLCHEHSSDQMTLPQ--------FGIHTNVRVCADCFNSSSR 69 (296)
Q Consensus 10 ~~~~C~~C~~~f~~~~r~hhCr~Cg~~~C~~c~~~~~~~~~--------~~~~~~~rvC~~C~~~~~~ 69 (296)
+.-.|.+|...|.- -.--.||++||..|...+..... ....+....|-.|...++.
T Consensus 17 ~~~~CpICld~~~d----PVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~ 80 (193)
T PLN03208 17 GDFDCNICLDQVRD----PVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSE 80 (193)
T ss_pred CccCCccCCCcCCC----cEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCCh
Confidence 34679999887642 22357999999999865532111 1112345689999988764
No 185
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=64.26 E-value=5.3 Score=35.70 Aligned_cols=62 Identities=18% Similarity=0.389 Sum_probs=40.2
Q ss_pred cccccccccccc--cccc--------cccccccccc------ceEcCCCCCCceecCCCC-----CCCcee--ccccchh
Q 022481 9 QEATRCDVCKCS--FNTF--------RRRHHCRCCG------RTLCHEHSSDQMTLPQFG-----IHTNVR--VCADCFN 65 (296)
Q Consensus 9 ~~~~~C~~C~~~--f~~~--------~r~hhCr~Cg------~~~C~~c~~~~~~~~~~~-----~~~~~r--vC~~C~~ 65 (296)
.....|.+|+.. .+.+ .|..||-.|+ ++-|..|-+.+ .+-.+. ....+| +|..|..
T Consensus 182 ~~~~~CPvCGs~P~~s~~~~~~~~~G~RyL~CslC~teW~~~R~~C~~Cg~~~-~l~y~~~e~~~~~~~~r~e~C~~C~~ 260 (305)
T TIGR01562 182 ESRTLCPACGSPPVASMVRQGGKETGLRYLSCSLCATEWHYVRVKCSHCEESK-HLAYLSLEHDAEKAVLKAETCDSCQG 260 (305)
T ss_pred CCCCcCCCCCChhhhhhhcccCCCCCceEEEcCCCCCcccccCccCCCCCCCC-ceeeEeecCCCCCcceEEeecccccc
Confidence 346699999984 2322 3788999998 46788886653 221111 122345 9999999
Q ss_pred hhcccC
Q 022481 66 SSSRTG 71 (296)
Q Consensus 66 ~~~~~~ 71 (296)
.++...
T Consensus 261 YlK~~~ 266 (305)
T TIGR01562 261 YLKILY 266 (305)
T ss_pred chhhhc
Confidence 887653
No 186
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=63.89 E-value=1.9 Score=37.61 Aligned_cols=46 Identities=17% Similarity=0.403 Sum_probs=31.3
Q ss_pred cccccccccccccccccccccccceEcCCCCCCceecCCCCCCCceeccccchhhhcc
Q 022481 12 TRCDVCKCSFNTFRRRHHCRCCGRTLCHEHSSDQMTLPQFGIHTNVRVCADCFNSSSR 69 (296)
Q Consensus 12 ~~C~~C~~~f~~~~r~hhCr~Cg~~~C~~c~~~~~~~~~~~~~~~~rvC~~C~~~~~~ 69 (296)
..|..|=. .++.--|-.||+|||+.|...+..- +.. |.-|....+.
T Consensus 240 ~kC~LCLe----~~~~pSaTpCGHiFCWsCI~~w~~e------k~e--CPlCR~~~~p 285 (293)
T KOG0317|consen 240 RKCSLCLE----NRSNPSATPCGHIFCWSCILEWCSE------KAE--CPLCREKFQP 285 (293)
T ss_pred CceEEEec----CCCCCCcCcCcchHHHHHHHHHHcc------ccC--CCcccccCCC
Confidence 57887755 3446679999999999997655432 222 7777766543
No 187
>PF01155 HypA: Hydrogenase expression/synthesis hypA family; InterPro: IPR000688 Bacterial membrane-bound nickel-dependent hydrogenases requires a number of accessory proteins which are involved in their maturation. The exact role of these proteins is not yet clear, but some seem to be required for the incorporation of the nickel ions []. One of these proteins is generally known as hypA. It is a protein of about 12 to 14 kDa that contains, in its C-terminal region, four conserved cysteines that form a zinc-finger like motif. Escherichia coli has two proteins that belong to this family, hypA and hybF. A homologue, MJ0214, has also been found in a number of archaeal species, including the genome of Methanocaldococcus jannaschii (Methanococcus jannaschii).; GO: 0016151 nickel ion binding, 0006464 protein modification process; PDB: 2KDX_A 3A44_D 3A43_B.
Probab=63.38 E-value=2.2 Score=32.15 Aligned_cols=24 Identities=29% Similarity=0.685 Sum_probs=14.6
Q ss_pred cccccccccccccccccccccccc
Q 022481 12 TRCDVCKCSFNTFRRRHHCRCCGR 35 (296)
Q Consensus 12 ~~C~~C~~~f~~~~r~hhCr~Cg~ 35 (296)
-.|..|+..|..-.....|..||.
T Consensus 71 ~~C~~Cg~~~~~~~~~~~CP~Cgs 94 (113)
T PF01155_consen 71 ARCRDCGHEFEPDEFDFSCPRCGS 94 (113)
T ss_dssp EEETTTS-EEECHHCCHH-SSSSS
T ss_pred EECCCCCCEEecCCCCCCCcCCcC
Confidence 468888888876655566666653
No 188
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=63.02 E-value=2 Score=26.33 Aligned_cols=30 Identities=27% Similarity=0.634 Sum_probs=13.5
Q ss_pred cccccccccccccccccccccceEcCCCCCC
Q 022481 14 CDVCKCSFNTFRRRHHCRCCGRTLCHEHSSD 44 (296)
Q Consensus 14 C~~C~~~f~~~~r~hhCr~Cg~~~C~~c~~~ 44 (296)
|.+|.. |+.....--=-.||.+||.+|..+
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~ 30 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQK 30 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHH
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHH
Confidence 667777 754333333345888888887644
No 189
>COG2126 RPL37A Ribosomal protein L37E [Translation, ribosomal structure and biogenesis]
Probab=62.43 E-value=3.9 Score=26.58 Aligned_cols=7 Identities=71% Similarity=1.739 Sum_probs=4.8
Q ss_pred cccccce
Q 022481 30 CRCCGRT 36 (296)
Q Consensus 30 Cr~Cg~~ 36 (296)
||.||+.
T Consensus 19 CRRCGr~ 25 (61)
T COG2126 19 CRRCGRR 25 (61)
T ss_pred hhhccch
Confidence 7777764
No 190
>KOG3576 consensus Ovo and related transcription factors [Transcription]
Probab=61.95 E-value=1.8 Score=35.92 Aligned_cols=57 Identities=26% Similarity=0.579 Sum_probs=37.8
Q ss_pred cccccccccccccc-ccc-----------cccccccccceEcCCCCCCce--ecC----CCC---CCCceeccccchh
Q 022481 9 QEATRCDVCKCSFN-TFR-----------RRHHCRCCGRTLCHEHSSDQM--TLP----QFG---IHTNVRVCADCFN 65 (296)
Q Consensus 9 ~~~~~C~~C~~~f~-~~~-----------r~hhCr~Cg~~~C~~c~~~~~--~~~----~~~---~~~~~rvC~~C~~ 65 (296)
....-|..|+|.|+ .|. |-+.|..|++.|-.+|+-..- .+- .+. ....+.||..|--
T Consensus 143 vkr~lct~cgkgfndtfdlkrh~rthtgvrpykc~~c~kaftqrcsleshl~kvhgv~~~yaykerr~kl~vcedcg~ 220 (267)
T KOG3576|consen 143 VKRHLCTFCGKGFNDTFDLKRHTRTHTGVRPYKCSLCEKAFTQRCSLESHLKKVHGVQHQYAYKERRAKLYVCEDCGY 220 (267)
T ss_pred HHHHHHhhccCcccchhhhhhhhccccCccccchhhhhHHHHhhccHHHHHHHHcCchHHHHHHHhhhheeeecccCC
Confidence 34567999999998 231 567899999999999975321 111 111 2345789999953
No 191
>PF06750 DiS_P_DiS: Bacterial Peptidase A24 N-terminal domain; InterPro: IPR010627 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This domain is found at the N terminus of bacterial aspartic peptidases belonging to MEROPS peptidase family A24 (clan AD), subfamily A24A (type IV prepilin peptidase, IPR000045 from INTERPRO). It's function has not been specifically determined; however some of the family have been characterised as bifunctional [], and this domain may contain the N-methylation activity. The domain consists of an intracellular region between a pair of transmembrane domains. This intracellular region contains an invariant proline and four conserved cysteines. These Cys residues are arranged in a two-pair motif, with the Cys residues of a pair separated (usually) by 2 aa and with each pair separated by 21 largely hydrophilic residues (C-X-X-C...X21...C-X-X-C); they have been shown to be essential to the overall function of the enzyme [, ]. The bifunctional enzyme prepilin peptidase (PilD) from Pseudomonas aeruginosa is a key determinant in both type-IV pilus biogenesis and extracellular protein secretion, in its roles as a leader peptidase and methyl transferase (MTase). It is responsible for endopeptidic cleavage of the unique leader peptides that characterise type-IV pilin precursors, as well as proteins with homologous leader sequences that are essential components of the general secretion pathway found in a variety of Gram-negative pathogens. Following removal of the leader peptides, the same enzyme is responsible for the second posttranslational modification that characterises the type-IV pilins and their homologues, namely N-methylation of the newly exposed N-terminal amino acid residue [].
Probab=61.83 E-value=4.4 Score=29.35 Aligned_cols=12 Identities=17% Similarity=0.631 Sum_probs=6.5
Q ss_pred cccccccccccc
Q 022481 11 ATRCDVCKCSFN 22 (296)
Q Consensus 11 ~~~C~~C~~~f~ 22 (296)
.+.|..|+++..
T Consensus 33 rS~C~~C~~~L~ 44 (92)
T PF06750_consen 33 RSHCPHCGHPLS 44 (92)
T ss_pred CCcCcCCCCcCc
Confidence 455666665543
No 192
>PF14803 Nudix_N_2: Nudix N-terminal; PDB: 3CNG_C.
Probab=61.79 E-value=5.5 Score=23.06 Aligned_cols=28 Identities=18% Similarity=0.368 Sum_probs=12.3
Q ss_pred EcCCCCCC-ceecCCCCCCCceeccccchh
Q 022481 37 LCHEHSSD-QMTLPQFGIHTNVRVCADCFN 65 (296)
Q Consensus 37 ~C~~c~~~-~~~~~~~~~~~~~rvC~~C~~ 65 (296)
||..|... ...+|.. -.+...||..|-.
T Consensus 2 fC~~CG~~l~~~ip~g-d~r~R~vC~~Cg~ 30 (34)
T PF14803_consen 2 FCPQCGGPLERRIPEG-DDRERLVCPACGF 30 (34)
T ss_dssp B-TTT--B-EEE--TT--SS-EEEETTTTE
T ss_pred ccccccChhhhhcCCC-CCccceECCCCCC
Confidence 44555433 2344433 2577889998853
No 193
>PF03604 DNA_RNApol_7kD: DNA directed RNA polymerase, 7 kDa subunit; InterPro: IPR006591 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Each class of RNA polymerase is assembled from 9 to 15 different polypeptides. Rbp10 (RNA polymerase CX) is a domain found in RNA polymerase subunit 10; present in RNA polymerase I, II and III.; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 2PMZ_Z 3HKZ_X 2NVX_L 3S1Q_L 2JA6_L 3S17_L 3HOW_L 3HOV_L 3PO2_L 3HOZ_L ....
Probab=61.36 E-value=5.4 Score=22.73 Aligned_cols=23 Identities=22% Similarity=0.541 Sum_probs=14.4
Q ss_pred cccccccccccc-ccccccccccc
Q 022481 13 RCDVCKCSFNTF-RRRHHCRCCGR 35 (296)
Q Consensus 13 ~C~~C~~~f~~~-~r~hhCr~Cg~ 35 (296)
.|..|+..|.+- .-...|+.||.
T Consensus 2 ~C~~Cg~~~~~~~~~~irC~~CG~ 25 (32)
T PF03604_consen 2 ICGECGAEVELKPGDPIRCPECGH 25 (32)
T ss_dssp BESSSSSSE-BSTSSTSSBSSSS-
T ss_pred CCCcCCCeeEcCCCCcEECCcCCC
Confidence 477888888743 23467888875
No 194
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=61.29 E-value=1.9 Score=36.41 Aligned_cols=35 Identities=20% Similarity=0.405 Sum_probs=25.1
Q ss_pred ccccceEcCCCCCCceecCCCCCCCceeccccchhhhccc
Q 022481 31 RCCGRTLCHEHSSDQMTLPQFGIHTNVRVCADCFNSSSRT 70 (296)
Q Consensus 31 r~Cg~~~C~~c~~~~~~~~~~~~~~~~rvC~~C~~~~~~~ 70 (296)
-.||+.||+-|.-++... ....+.|-.|...++..
T Consensus 63 TlCGHLFCWpClyqWl~~-----~~~~~~cPVCK~~Vs~~ 97 (230)
T KOG0823|consen 63 TLCGHLFCWPCLYQWLQT-----RPNSKECPVCKAEVSID 97 (230)
T ss_pred eecccceehHHHHHHHhh-----cCCCeeCCccccccccc
Confidence 479999999999877544 23456677887776543
No 195
>PF08271 TF_Zn_Ribbon: TFIIB zinc-binding; InterPro: IPR013137 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger motif found in transcription factor IIB (TFIIB). In eukaryotes the initiation of transcription of protein encoding genes by the polymerase II complexe (Pol II) is modulated by general and specific transcription factors. The general transcription factors operate through common promoters elements (such as the TATA box). At least seven different proteins associate to form the general transcription factors: TFIIA, -IIB, -IID, -IIE, -IIF, -IIG, and -IIH []. TFIIB and TFIID are responsible for promoter recognition and interaction with pol II; together with Pol II, they form a minimal initiation complex capable of transcription under certain conditions. The TATA box of a Pol II promoter is bound in the initiation complex by the TBP subunit of TFIID, which bends the DNA around the C-terminal domain of TFIIB whereas the N-terminal zinc finger of TFIIB interacts with Pol II [, ]. The TFIIB zinc finger adopts a zinc ribbon fold characterised by two beta-hairpins forming two structurally similar zinc-binding sub-sites []. The zinc finger contacts the rbp1 subunit of Pol II through its dock domain, a conserved region of about 70 amino acids located close to the polymerase active site []. In the Pol II complex this surface is located near the RNA exit groove. Interestingly this sequence is best conserved in the three polymerases that utilise a TFIIB-like general transcription factor (Pol II, Pol III, and archaeal RNA polymerase) but not in Pol I []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1VD4_A 1PFT_A 3K1F_M 3K7A_M 1RO4_A 1RLY_A 1DL6_A.
Probab=61.28 E-value=4.7 Score=24.52 Aligned_cols=9 Identities=22% Similarity=0.667 Sum_probs=4.8
Q ss_pred ccccccccc
Q 022481 13 RCDVCKCSF 21 (296)
Q Consensus 13 ~C~~C~~~f 21 (296)
.|..|+.+.
T Consensus 2 ~Cp~Cg~~~ 10 (43)
T PF08271_consen 2 KCPNCGSKE 10 (43)
T ss_dssp SBTTTSSSE
T ss_pred CCcCCcCCc
Confidence 455665543
No 196
>PF01286 XPA_N: XPA protein N-terminal; InterPro: IPR022652 Xeroderma pigmentosum (XP) [] is a human autosomal recessive disease, characterised by a high incidence of sunlight-induced skin cancer. Skin cells of individual's with this condition are hypersensitive to ultraviolet light, due to defects in the incision step of DNA excision repair. There are a minimum of seven genetic complementation groups involved in this pathway: XP-A to XP-G. XP-A is the most severe form of the disease and is due to defects in a 30 kDa nuclear protein called XPA (or XPAC) []. The sequence of the XPA protein is conserved from higher eukaryotes [] to yeast (gene RAD14) []. XPA is a hydrophilic protein of 247 to 296 amino-acid residues which has a C4-type zinc finger motif in its central section. This entry contains the zinc-finger containing region in the XPA protein. It is found N-terminal to PF05181 from PFAM ; PDB: 1D4U_A 1XPA_A.
Probab=61.00 E-value=4.6 Score=23.38 Aligned_cols=12 Identities=33% Similarity=0.769 Sum_probs=4.9
Q ss_pred cccccccccccc
Q 022481 11 ATRCDVCKCSFN 22 (296)
Q Consensus 11 ~~~C~~C~~~f~ 22 (296)
...|..|+++|.
T Consensus 3 ~~~C~eC~~~f~ 14 (34)
T PF01286_consen 3 YPKCDECGKPFM 14 (34)
T ss_dssp -EE-TTT--EES
T ss_pred CchHhHhCCHHH
Confidence 345666666665
No 197
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=60.83 E-value=4.2 Score=40.31 Aligned_cols=32 Identities=22% Similarity=0.633 Sum_probs=21.5
Q ss_pred ccccccccccccccccccccccccccce------EcCCCCCC
Q 022481 9 QEATRCDVCKCSFNTFRRRHHCRCCGRT------LCHEHSSD 44 (296)
Q Consensus 9 ~~~~~C~~C~~~f~~~~r~hhCr~Cg~~------~C~~c~~~ 44 (296)
..++.|..|+.++.. ..|..||.. ||..|...
T Consensus 13 ~~akFC~~CG~~l~~----~~Cp~CG~~~~~~~~fC~~CG~~ 50 (645)
T PRK14559 13 NNNRFCQKCGTSLTH----KPCPQCGTEVPVDEAHCPNCGAE 50 (645)
T ss_pred CCCccccccCCCCCC----CcCCCCCCCCCcccccccccCCc
Confidence 346678888887753 258888776 67777544
No 198
>PRK12495 hypothetical protein; Provisional
Probab=60.75 E-value=1e+02 Score=26.07 Aligned_cols=32 Identities=22% Similarity=0.629 Sum_probs=20.1
Q ss_pred ccccccccceEcCCCCCCceecCCCCCCCceeccccchhhhcccCC
Q 022481 27 RHHCRCCGRTLCHEHSSDQMTLPQFGIHTNVRVCADCFNSSSRTGK 72 (296)
Q Consensus 27 ~hhCr~Cg~~~C~~c~~~~~~~~~~~~~~~~rvC~~C~~~~~~~~~ 72 (296)
..||..||.- ||.+ .-+.+|..|-..+.....
T Consensus 42 a~hC~~CG~P-----------Ipa~---pG~~~Cp~CQ~~~~~~~~ 73 (226)
T PRK12495 42 NAHCDECGDP-----------IFRH---DGQEFCPTCQQPVTEDGA 73 (226)
T ss_pred hhhcccccCc-----------ccCC---CCeeECCCCCCccccccc
Confidence 4677777643 3322 457888888887765443
No 199
>smart00659 RPOLCX RNA polymerase subunit CX. present in RNA polymerase I, II and III
Probab=60.37 E-value=4.8 Score=24.80 Aligned_cols=22 Identities=27% Similarity=0.605 Sum_probs=13.9
Q ss_pred cccccccccccc-cccccccccc
Q 022481 13 RCDVCKCSFNTF-RRRHHCRCCG 34 (296)
Q Consensus 13 ~C~~C~~~f~~~-~r~hhCr~Cg 34 (296)
.|..|+..|.+- ...-.|+.||
T Consensus 4 ~C~~Cg~~~~~~~~~~irC~~CG 26 (44)
T smart00659 4 ICGECGRENEIKSKDVVRCRECG 26 (44)
T ss_pred ECCCCCCEeecCCCCceECCCCC
Confidence 588899988865 2334444444
No 200
>PF06221 zf-C2HC5: Putative zinc finger motif, C2HC5-type; InterPro: IPR009349 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This zinc finger appears to be common in activating signal cointegrator 1/thyroid receptor interacting protein 4. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=60.20 E-value=3.1 Score=27.22 Aligned_cols=17 Identities=29% Similarity=0.880 Sum_probs=13.2
Q ss_pred ccccccccccccceEcC
Q 022481 23 TFRRRHHCRCCGRTLCH 39 (296)
Q Consensus 23 ~~~r~hhCr~Cg~~~C~ 39 (296)
+|.---+|-.||+|+|.
T Consensus 14 L~~~~~NCl~CGkIiC~ 30 (57)
T PF06221_consen 14 LFPYAPNCLNCGKIICE 30 (57)
T ss_pred CccccccccccChhhcc
Confidence 33446789999999986
No 201
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=59.79 E-value=0.91 Score=44.71 Aligned_cols=45 Identities=24% Similarity=0.628 Sum_probs=31.7
Q ss_pred cccccccccccccccccccccccceEcCCCCCCceecCCCCCCCceeccccchhhh
Q 022481 12 TRCDVCKCSFNTFRRRHHCRCCGRTLCHEHSSDQMTLPQFGIHTNVRVCADCFNSS 67 (296)
Q Consensus 12 ~~C~~C~~~f~~~~r~hhCr~Cg~~~C~~c~~~~~~~~~~~~~~~~rvC~~C~~~~ 67 (296)
-.|..|...|-- --=-.||++||..|...+. ....|-|..|-..+
T Consensus 644 LkCs~Cn~R~Kd----~vI~kC~H~FC~~Cvq~r~-------etRqRKCP~Cn~aF 688 (698)
T KOG0978|consen 644 LKCSVCNTRWKD----AVITKCGHVFCEECVQTRY-------ETRQRKCPKCNAAF 688 (698)
T ss_pred eeCCCccCchhh----HHHHhcchHHHHHHHHHHH-------HHhcCCCCCCCCCC
Confidence 468888865541 1113699999999987643 35789999997654
No 202
>PF09947 DUF2180: Uncharacterized protein conserved in archaea (DUF2180); InterPro: IPR017211 This group represents a predicted zinc finger protein, AF1427 type.
Probab=58.25 E-value=2.9 Score=28.36 Aligned_cols=56 Identities=21% Similarity=0.460 Sum_probs=31.8
Q ss_pred ccccccccccccccccccccccceEcCCCCCCc-eecCCCCC---------CCceeccccchhhhc
Q 022481 13 RCDVCKCSFNTFRRRHHCRCCGRTLCHEHSSDQ-MTLPQFGI---------HTNVRVCADCFNSSS 68 (296)
Q Consensus 13 ~C~~C~~~f~~~~r~hhCr~Cg~~~C~~c~~~~-~~~~~~~~---------~~~~rvC~~C~~~~~ 68 (296)
.|+.|.+.=.-..----|..||.-+|.+++... .++..-++ .-+.-+|..|+..+.
T Consensus 2 kCY~Ca~~gkdt~AVavCivCG~GlC~~H~~~e~~~~~~g~yp~~~~~~~~~l~RilC~~C~~a~~ 67 (68)
T PF09947_consen 2 KCYDCAEEGKDTDAVAVCIVCGAGLCMDHSKREEIPVWEGGYPFPSKKLKKPLPRILCPECHAALK 67 (68)
T ss_pred cchhhhhcCCCccceehHHhcCchhhHHHHhhhheeeeccCCCCccccccCCCCeeecHHHHHHhh
Confidence 355554432222233468999999999997653 22211111 113347999998764
No 203
>KOG1314 consensus DHHC-type Zn-finger protein [General function prediction only]
Probab=57.96 E-value=5 Score=36.18 Aligned_cols=33 Identities=27% Similarity=0.597 Sum_probs=21.8
Q ss_pred CCCCCCCccc-----cccccccccccccccccccccccce
Q 022481 2 SIEPPAFQEA-----TRCDVCKCSFNTFRRRHHCRCCGRT 36 (296)
Q Consensus 2 ~~~w~~~~~~-----~~C~~C~~~f~~~~r~hhCr~Cg~~ 36 (296)
-..|.|.... ..|..|+- | ---|-||||.|.+-
T Consensus 77 p~~wkPe~~~D~~~lqfCk~Cqg-Y-KapRSHHCrkCnrC 114 (414)
T KOG1314|consen 77 PLGWKPENPKDEMFLQFCKKCQG-Y-KAPRSHHCRKCNRC 114 (414)
T ss_pred CCCCCCCCChhHHHHHHHhhccC-c-CCCccccchHHHHH
Confidence 4568774332 46777764 1 23589999999875
No 204
>smart00834 CxxC_CXXC_SSSS Putative regulatory protein. CxxC_CXXC_SSSS represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=57.72 E-value=4.3 Score=24.08 Aligned_cols=13 Identities=31% Similarity=0.974 Sum_probs=7.9
Q ss_pred ccccccccccccc
Q 022481 13 RCDVCKCSFNTFR 25 (296)
Q Consensus 13 ~C~~C~~~f~~~~ 25 (296)
.|..|++.|..+.
T Consensus 7 ~C~~Cg~~fe~~~ 19 (41)
T smart00834 7 RCEDCGHTFEVLQ 19 (41)
T ss_pred EcCCCCCEEEEEE
Confidence 5666777666443
No 205
>PRK12380 hydrogenase nickel incorporation protein HybF; Provisional
Probab=57.64 E-value=5 Score=30.24 Aligned_cols=23 Identities=17% Similarity=0.472 Sum_probs=13.0
Q ss_pred ccccccccccccccccccccccc
Q 022481 12 TRCDVCKCSFNTFRRRHHCRCCG 34 (296)
Q Consensus 12 ~~C~~C~~~f~~~~r~hhCr~Cg 34 (296)
-.|..|+..|..-.+..-|..||
T Consensus 71 ~~C~~Cg~~~~~~~~~~~CP~Cg 93 (113)
T PRK12380 71 AWCWDCSQVVEIHQHDAQCPHCH 93 (113)
T ss_pred EEcccCCCEEecCCcCccCcCCC
Confidence 35667776666544444455555
No 206
>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]
Probab=57.54 E-value=4 Score=35.48 Aligned_cols=12 Identities=25% Similarity=0.459 Sum_probs=7.7
Q ss_pred eeccccchhhhc
Q 022481 57 VRVCADCFNSSS 68 (296)
Q Consensus 57 ~rvC~~C~~~~~ 68 (296)
.--|..|.+.+.
T Consensus 243 ~~qC~~C~KsFs 254 (279)
T KOG2462|consen 243 KHQCPRCGKSFA 254 (279)
T ss_pred cccCcchhhHHH
Confidence 556777766543
No 207
>cd02341 ZZ_ZZZ3 Zinc finger, ZZ type. Zinc finger present in ZZZ3 (ZZ finger containing 3) and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.
Probab=56.29 E-value=3.9 Score=25.73 Aligned_cols=29 Identities=31% Similarity=0.779 Sum_probs=19.8
Q ss_pred ccccccc-ccccccccccccccc---ceEcCCCCC
Q 022481 13 RCDVCKC-SFNTFRRRHHCRCCG---RTLCHEHSS 43 (296)
Q Consensus 13 ~C~~C~~-~f~~~~r~hhCr~Cg---~~~C~~c~~ 43 (296)
.|..|+. ++. ..|+||..|. .=+|..|-.
T Consensus 2 ~Cd~C~~~pI~--G~R~~C~~C~~~d~DlC~~C~~ 34 (48)
T cd02341 2 KCDSCGIEPIP--GTRYHCSECDDGDFDLCQDCVV 34 (48)
T ss_pred CCCCCCCCccc--cceEECCCCCCCCCccCHHHHh
Confidence 4788887 443 5689999887 446666643
No 208
>PRK00564 hypA hydrogenase nickel incorporation protein; Provisional
Probab=56.08 E-value=5.5 Score=30.25 Aligned_cols=23 Identities=22% Similarity=0.496 Sum_probs=13.0
Q ss_pred ccccccccccccccccc-cccccc
Q 022481 12 TRCDVCKCSFNTFRRRH-HCRCCG 34 (296)
Q Consensus 12 ~~C~~C~~~f~~~~r~h-hCr~Cg 34 (296)
-.|..|+..|..-...+ +|..||
T Consensus 72 ~~C~~Cg~~~~~~~~~~~~CP~Cg 95 (117)
T PRK00564 72 LECKDCSHVFKPNALDYGVCEKCH 95 (117)
T ss_pred EEhhhCCCccccCCccCCcCcCCC
Confidence 46777777776543322 355554
No 209
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=55.98 E-value=8.7 Score=28.12 Aligned_cols=32 Identities=22% Similarity=0.416 Sum_probs=23.6
Q ss_pred cccccccccccccccccccccccccceEcCCCCC
Q 022481 10 EATRCDVCKCSFNTFRRRHHCRCCGRTLCHEHSS 43 (296)
Q Consensus 10 ~~~~C~~C~~~f~~~~r~hhCr~Cg~~~C~~c~~ 43 (296)
+...|..|+++|+. ....-..||.+|-..|..
T Consensus 77 ~~~~C~vC~k~l~~--~~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 77 ESTKCSVCGKPLGN--SVFVVFPCGHVVHYSCIK 108 (109)
T ss_pred CCCCccCcCCcCCC--ceEEEeCCCeEEeccccc
Confidence 45679999998864 445556788888888864
No 210
>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]
Probab=55.46 E-value=3.1 Score=36.17 Aligned_cols=26 Identities=23% Similarity=0.866 Sum_probs=17.9
Q ss_pred ccccccccccc---ccc---------cccccccccceE
Q 022481 12 TRCDVCKCSFN---TFR---------RRHHCRCCGRTL 37 (296)
Q Consensus 12 ~~C~~C~~~f~---~~~---------r~hhCr~Cg~~~ 37 (296)
-.|.+|+|.|+ +|. |-.-|..||+.|
T Consensus 188 c~C~iCGKaFSRPWLLQGHiRTHTGEKPF~C~hC~kAF 225 (279)
T KOG2462|consen 188 CECGICGKAFSRPWLLQGHIRTHTGEKPFSCPHCGKAF 225 (279)
T ss_pred cccccccccccchHHhhcccccccCCCCccCCcccchh
Confidence 46888888887 332 445677777776
No 211
>PRK04136 rpl40e 50S ribosomal protein L40e; Provisional
Probab=54.24 E-value=7.4 Score=24.32 Aligned_cols=23 Identities=30% Similarity=0.609 Sum_probs=14.5
Q ss_pred ccccccccccccccccccccccccc
Q 022481 11 ATRCDVCKCSFNTFRRRHHCRCCGR 35 (296)
Q Consensus 11 ~~~C~~C~~~f~~~~r~hhCr~Cg~ 35 (296)
...|+.|...- --|-..||.||.
T Consensus 14 k~ICrkC~ARn--p~~A~~CRKCg~ 36 (48)
T PRK04136 14 KKICMRCNARN--PWRATKCRKCGY 36 (48)
T ss_pred ccchhcccCCC--CccccccccCCC
Confidence 45677777643 235677887774
No 212
>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=54.01 E-value=5.4 Score=24.19 Aligned_cols=9 Identities=33% Similarity=1.091 Sum_probs=4.2
Q ss_pred ccccccccc
Q 022481 14 CDVCKCSFN 22 (296)
Q Consensus 14 C~~C~~~f~ 22 (296)
|..|+..|.
T Consensus 8 C~~Cg~~fe 16 (42)
T PF09723_consen 8 CEECGHEFE 16 (42)
T ss_pred eCCCCCEEE
Confidence 444444444
No 213
>PF12760 Zn_Tnp_IS1595: Transposase zinc-ribbon domain; InterPro: IPR024442 This zinc binding domain is found in a range of transposase proteins such as ISSPO8, ISSOD11, ISRSSP2 etc. It may be a zinc-binding beta ribbon domain that could bind DNA.
Probab=52.88 E-value=8.7 Score=23.72 Aligned_cols=28 Identities=21% Similarity=0.699 Sum_probs=16.3
Q ss_pred Ccccccccccccc--cccc-ccccccccccc
Q 022481 8 FQEATRCDVCKCS--FNTF-RRRHHCRCCGR 35 (296)
Q Consensus 8 ~~~~~~C~~C~~~--f~~~-~r~hhCr~Cg~ 35 (296)
|.+...|..|+.. +.+- +.++.|+.|++
T Consensus 15 W~~g~~CP~Cg~~~~~~~~~~~~~~C~~C~~ 45 (46)
T PF12760_consen 15 WPDGFVCPHCGSTKHYRLKTRGRYRCKACRK 45 (46)
T ss_pred CCCCCCCCCCCCeeeEEeCCCCeEECCCCCC
Confidence 3344668888763 2222 35677777764
No 214
>PRK03824 hypA hydrogenase nickel incorporation protein; Provisional
Probab=52.45 E-value=6.7 Score=30.60 Aligned_cols=13 Identities=31% Similarity=0.731 Sum_probs=7.1
Q ss_pred ccccccccccceE
Q 022481 25 RRRHHCRCCGRTL 37 (296)
Q Consensus 25 ~r~hhCr~Cg~~~ 37 (296)
.-+..|+.||.+|
T Consensus 68 p~~~~C~~CG~~~ 80 (135)
T PRK03824 68 EAVLKCRNCGNEW 80 (135)
T ss_pred ceEEECCCCCCEE
Confidence 3455566666554
No 215
>KOG1595 consensus CCCH-type Zn-finger protein [General function prediction only]
Probab=52.41 E-value=3.1 Score=39.51 Aligned_cols=89 Identities=15% Similarity=0.026 Sum_probs=64.2
Q ss_pred cChHHHHHHHHcCCHHHHHHHHHcC-CCCcccCCCCCcHHHHHHHc---CCHHHHHHHHHCCCCCCccCCCCCCHh---h
Q 022481 197 VNGEGLRDAIKNGDAAAVKKLLSEG-VDANFCDKQGMSLLHLAALF---NRTDIAFILMESGANMDCKNAQGESPL---D 269 (296)
Q Consensus 197 ~~~t~Lh~A~~~g~~~~v~~Ll~~g-advn~~d~~g~TpLh~A~~~---g~~~iv~~LL~~ga~~~~~d~~g~TpL---~ 269 (296)
...|+|+.|+..|.++++.+++-.+ .++|..=.+|.. |.++.. +.++.+..|+.+++..+..|..|+-+. |
T Consensus 57 ~qR~~~~v~~~~Gs~~~~~~i~~~~~~e~~~~C~~~~~--~C~~~g~s~~~~e~~~hL~~~k~~~~~tda~g~~~~~v~~ 134 (528)
T KOG1595|consen 57 NQRRRRPVARRDGSFNYSPDIYCTKYDEVTGICPDGDE--HCAVLGRSVGDTERTYHLRYYKTLPCVTDARGNCVKNVLH 134 (528)
T ss_pred ccccccchhhhcCccccccceeecchhhccccCCCCcc--cchhcccccCCcceeEeccccccccCccccCCCcccCccc
Confidence 3456999999999999999998654 555554445555 666544 567788889999999999988887655 3
Q ss_pred Hhhh---cCcHHHHHHHHHcC
Q 022481 270 CAPV---TLQYKMRQKMEEDK 287 (296)
Q Consensus 270 ~A~~---~g~~~iv~~Ll~~g 287 (296)
.|.. .+...+++.|++.+
T Consensus 135 ~~~~~~~~~~r~~~~~l~e~~ 155 (528)
T KOG1595|consen 135 CAFAHGPNDLRPPVEDLLELQ 155 (528)
T ss_pred ccccCCccccccHHHHHHhcc
Confidence 3333 34466788888775
No 216
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=52.40 E-value=5.4 Score=34.00 Aligned_cols=44 Identities=18% Similarity=0.378 Sum_probs=29.6
Q ss_pred ccccccccccccccccccccccceEcCCCCCCceecCCCCCCCceeccccchhhhc
Q 022481 13 RCDVCKCSFNTFRRRHHCRCCGRTLCHEHSSDQMTLPQFGIHTNVRVCADCFNSSS 68 (296)
Q Consensus 13 ~C~~C~~~f~~~~r~hhCr~Cg~~~C~~c~~~~~~~~~~~~~~~~rvC~~C~~~~~ 68 (296)
+|..|+..=+ ....+=-.|++|||..|...-. -++|..|...+.
T Consensus 5 hCn~C~~~~~--~~~f~LTaC~HvfC~~C~k~~~----------~~~C~lCkk~ir 48 (233)
T KOG4739|consen 5 HCNKCFRFPS--QDPFFLTACRHVFCEPCLKASS----------PDVCPLCKKSIR 48 (233)
T ss_pred EeccccccCC--CCceeeeechhhhhhhhcccCC----------ccccccccceee
Confidence 6777766322 4455556899999999986521 128999987653
No 217
>PF01529 zf-DHHC: DHHC palmitoyltransferase; InterPro: IPR001594 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the DHHC-type zinc finger domain, which is also known as NEW1 []. The DHHC Zn-finger was first isolated in the Drosophila putative transcription factor DNZ1 and was named after a conserved sequence motif []. This domain has palmitoyltransferase activity; this post-translational modification attaches the C16 saturated fatty acid palmitate via a thioester linkage, predominantly to cysteine residues []. This domain is found in the DHHC proteins which are palmitoyl transferases []; the DHHC motif is found within a cysteine-rich domain which is thought to contain the catalytic site. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding
Probab=50.02 E-value=8.4 Score=30.96 Aligned_cols=26 Identities=42% Similarity=0.903 Sum_probs=18.4
Q ss_pred cccccccccccccccccccccccccceE
Q 022481 10 EATRCDVCKCSFNTFRRRHHCRCCGRTL 37 (296)
Q Consensus 10 ~~~~C~~C~~~f~~~~r~hhCr~Cg~~~ 37 (296)
+...|..|... .-.|-|||+.||+.+
T Consensus 47 ~~~~C~~C~~~--kp~Rs~HC~~C~~CV 72 (174)
T PF01529_consen 47 ELKYCSTCKII--KPPRSHHCRVCNRCV 72 (174)
T ss_pred CCEECcccCCc--CCCcceecccccccc
Confidence 34667777653 445899999998764
No 218
>PF01428 zf-AN1: AN1-like Zinc finger; InterPro: IPR000058 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the AN1-type zinc finger domain, which has a dimetal (zinc)-bound alpha/beta fold. This domain was first identified as a zinc finger at the C terminus of AN1 Q91889 from SWISSPROT, a ubiquitin-like protein in Xenopus laevis []. The AN1-type zinc finger contains six conserved cysteines and two histidines that could potentially coordinate 2 zinc atoms. Certain stress-associated proteins (SAP) contain AN1 domain, often in combination with A20 zinc finger domains (SAP8) or C2H2 domains (SAP16) []. For example, the human protein Znf216 has an A20 zinc-finger at the N terminus and an AN1 zinc-finger at the C terminus, acting to negatively regulate the NFkappaB activation pathway and to interact with components of the immune response like RIP, IKKgamma and TRAF6. The interact of Znf216 with IKK-gamma and RIP is mediated by the A20 zinc-finger domain, while its interaction with TRAF6 is mediated by the AN1 zinc-finger domain; therefore, both zinc-finger domains are involved in regulating the immune response []. The AN1 zinc finger domain is also found in proteins containing a ubiquitin-like domain, which are involved in the ubiquitination pathway []. Proteins containing an AN1-type zinc finger include: Ascidian posterior end mark 6 (pem-6) protein []. Human AWP1 protein (associated with PRK1), which is expressed during early embryogenesis []. Human immunoglobulin mu binding protein 2 (SMUBP-2), mutations in which cause muscular atrophy with respiratory distress type 1 []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 1WFP_A 1WYS_A 1WG2_A 1WFH_A 1X4W_A 1WFE_A 1WFL_A 1X4V_A.
Probab=49.33 E-value=9.8 Score=23.13 Aligned_cols=15 Identities=33% Similarity=1.189 Sum_probs=9.8
Q ss_pred ccccccccceEcCCC
Q 022481 27 RHHCRCCGRTLCHEH 41 (296)
Q Consensus 27 ~hhCr~Cg~~~C~~c 41 (296)
-..|+.||..||..+
T Consensus 13 ~~~C~~C~~~FC~~H 27 (43)
T PF01428_consen 13 PFKCKHCGKSFCLKH 27 (43)
T ss_dssp HEE-TTTS-EE-TTT
T ss_pred CeECCCCCcccCccc
Confidence 567999999998765
No 219
>PF00301 Rubredoxin: Rubredoxin; InterPro: IPR004039 Rubredoxin is a low molecular weight iron-containing bacterial protein involved in electron transfer [, ], sometimes replacing ferredoxin as an electron carrier []. The 3-D structures of a number of rubredoxins have been solved [, ]. The fold belongs to the alpha+beta class, with 2 alpha-helices and 2-3 beta-strands. Its active site contains an iron ion which is co-ordinated by the sulphurs of four conserved cysteine residues forming an almost regular tetrahedron. The conserved cysteines reside on two loops, which are the most conserved regions of the protein. In addition, a ring of acidic residues in the proximity of the [Fe(Cys)4] centre is also well-conserved []. ; GO: 0009055 electron carrier activity, 0046872 metal ion binding; PDB: 2RDV_C 1RDV_A 1S24_A 1T9O_B 1B2J_A 1SMW_A 2PVE_B 1BFY_A 1T9P_C 1C09_C ....
Probab=49.22 E-value=8.5 Score=24.07 Aligned_cols=13 Identities=23% Similarity=0.623 Sum_probs=10.7
Q ss_pred ccccccccceEcC
Q 022481 27 RHHCRCCGRTLCH 39 (296)
Q Consensus 27 ~hhCr~Cg~~~C~ 39 (296)
|+.|+.||.|+=.
T Consensus 1 ky~C~~CgyvYd~ 13 (47)
T PF00301_consen 1 KYQCPVCGYVYDP 13 (47)
T ss_dssp EEEETTTSBEEET
T ss_pred CcCCCCCCEEEcC
Confidence 6889999999854
No 220
>PF11781 RRN7: RNA polymerase I-specific transcription initiation factor Rrn7; InterPro: IPR021752 Rrn7 is a transcription binding factor that associates strongly with both Rrn6 and Rrn11 to form a complex which itself binds the TATA-binding protein and is required for transcription by the core domain of the RNA PolI promoter [],[].
Probab=48.70 E-value=11 Score=22.10 Aligned_cols=24 Identities=25% Similarity=0.555 Sum_probs=14.5
Q ss_pred cccccccccc-ccccccccccccce
Q 022481 13 RCDVCKCSFN-TFRRRHHCRCCGRT 36 (296)
Q Consensus 13 ~C~~C~~~f~-~~~r~hhCr~Cg~~ 36 (296)
.|.+|+..|. .-..++-|..||.+
T Consensus 10 ~C~~C~~~~~~~~dG~~yC~~cG~~ 34 (36)
T PF11781_consen 10 PCPVCGSRWFYSDDGFYYCDRCGHQ 34 (36)
T ss_pred cCCCCCCeEeEccCCEEEhhhCceE
Confidence 4777877643 34456666666654
No 221
>PF02150 RNA_POL_M_15KD: RNA polymerases M/15 Kd subunit; InterPro: IPR001529 DNA-directed RNA polymerases 2.7.7.6 from EC (also known as DNA-dependent RNA polymerases) are responsible for the polymerisation of ribonucleotides into a sequence complementary to the template DNA. In eukaryotes, there are three different forms of DNA-directed RNA polymerases transcribing different sets of genes. Most RNA polymerases are multimeric enzymes and are composed of a variable number of subunits. The core RNA polymerase complex consists of five subunits (two alpha, one beta, one beta-prime and one omega) and is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. The core RNA polymerase complex forms a "crab claw"-like structure with an internal channel running along the full length []. The key functional sites of the enzyme, as defined by mutational and cross-linking analysis, are located on the inner wall of this channel. RNA synthesis follows after the attachment of RNA polymerase to a specific site, the promoter, on the template DNA strand. The RNA synthesis process continues until a termination sequence is reached. The RNA product, which is synthesised in the 5' to 3'direction, is known as the primary transcript. Eukaryotic nuclei contain three distinct types of RNA polymerases that differ in the RNA they synthesise: RNA polymerase I: located in the nucleoli, synthesises precursors of most ribosomal RNAs. RNA polymerase II: occurs in the nucleoplasm, synthesises mRNA precursors. RNA polymerase III: also occurs in the nucleoplasm, synthesises the precursors of 5S ribosomal RNA, the tRNAs, and a variety of other small nuclear and cytosolic RNAs. Eukaryotic cells are also known to contain separate mitochondrial and chloroplast RNA polymerases. Eukaryotic RNA polymerases, whose molecular masses vary in size from 500 to 700 kDa, contain two non-identical large (>100 kDa) subunits and an array of up to 12 different small (less than 50 kDa) subunits. In archaebacteria, there is generally a single form of RNA polymerase which also consist of an oligomeric assemblage of 10 to 13 polypeptides. It has recently been shown [], [] that small subunits of about 15 kDa, found in polymerase types I and II, are highly conserved. These proteins contain a probable zinc finger in their N-terminal region and a C-terminal zinc ribbon domain (see IPR001222 from INTERPRO).; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 3H0G_I 3M4O_I 3S14_I 2E2J_I 4A3J_I 3HOZ_I 1TWA_I 3S1Q_I 3S1N_I 1TWG_I ....
Probab=48.24 E-value=9.6 Score=22.13 Aligned_cols=7 Identities=29% Similarity=0.762 Sum_probs=3.6
Q ss_pred EcCCCCC
Q 022481 37 LCHEHSS 43 (296)
Q Consensus 37 ~C~~c~~ 43 (296)
||..|.+
T Consensus 3 FCp~C~n 9 (35)
T PF02150_consen 3 FCPECGN 9 (35)
T ss_dssp BETTTTS
T ss_pred eCCCCCc
Confidence 5555544
No 222
>KOG1311 consensus DHHC-type Zn-finger proteins [General function prediction only]
Probab=48.11 E-value=8.1 Score=34.36 Aligned_cols=26 Identities=31% Similarity=0.696 Sum_probs=20.3
Q ss_pred cccccccccccccccccccccccccceE
Q 022481 10 EATRCDVCKCSFNTFRRRHHCRCCGRTL 37 (296)
Q Consensus 10 ~~~~C~~C~~~f~~~~r~hhCr~Cg~~~ 37 (296)
+.+.|..|+.- .-.|-|||+.|++-+
T Consensus 112 ~~~~C~~C~~~--rPpRs~HCsvC~~CV 137 (299)
T KOG1311|consen 112 EWKYCDTCQLY--RPPRSSHCSVCNNCV 137 (299)
T ss_pred ceEEcCcCccc--CCCCcccchhhcccc
Confidence 35789999874 567899999988754
No 223
>PRK03681 hypA hydrogenase nickel incorporation protein; Validated
Probab=47.99 E-value=8.8 Score=28.97 Aligned_cols=11 Identities=18% Similarity=0.625 Sum_probs=6.3
Q ss_pred ccccccccccc
Q 022481 13 RCDVCKCSFNT 23 (296)
Q Consensus 13 ~C~~C~~~f~~ 23 (296)
.|..|+..|..
T Consensus 72 ~C~~Cg~~~~~ 82 (114)
T PRK03681 72 WCETCQQYVTL 82 (114)
T ss_pred EcccCCCeeec
Confidence 46666665554
No 224
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=47.96 E-value=4.7 Score=23.89 Aligned_cols=30 Identities=20% Similarity=0.532 Sum_probs=18.8
Q ss_pred cccccccccccccccccccccceEcCCCCCCce
Q 022481 14 CDVCKCSFNTFRRRHHCRCCGRTLCHEHSSDQM 46 (296)
Q Consensus 14 C~~C~~~f~~~~r~hhCr~Cg~~~C~~c~~~~~ 46 (296)
|.+|...|.... .=..||..||..|....+
T Consensus 1 C~iC~~~~~~~~---~~~~C~H~fC~~C~~~~~ 30 (41)
T PF00097_consen 1 CPICLEPFEDPV---ILLPCGHSFCRDCLRKWL 30 (41)
T ss_dssp ETTTSSBCSSEE---EETTTSEEEEHHHHHHHH
T ss_pred CCcCCccccCCC---EEecCCCcchHHHHHHHH
Confidence 556666555332 345788888888876543
No 225
>cd02340 ZZ_NBR1_like Zinc finger, ZZ type. Zinc finger present in Drosophila ref(2)P, NBR1, Human sequestosome 1 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Drosophila ref(2)P appears to control the multiplication of sigma rhabdovirus. NBR1 (Next to BRCA1 gene 1 protein) interacts with fasciculation and elongation protein zeta-1 (FEZ1) and calcium and integrin binding protein (CIB), and may function in cell signalling pathways. Sequestosome 1 is a phosphotyrosine independent ligand for the Lck SH2 domain and binds noncovalently to ubiquitin via its UBA domain.
Probab=47.48 E-value=7.5 Score=23.73 Aligned_cols=30 Identities=27% Similarity=0.622 Sum_probs=21.6
Q ss_pred ccccccccccccccccccccc-cceEcCCCCCC
Q 022481 13 RCDVCKCSFNTFRRRHHCRCC-GRTLCHEHSSD 44 (296)
Q Consensus 13 ~C~~C~~~f~~~~r~hhCr~C-g~~~C~~c~~~ 44 (296)
.|..|++ ..+-.|++|..| ..-+|..|-..
T Consensus 2 ~Cd~C~~--~i~G~ry~C~~C~d~dLC~~C~~~ 32 (43)
T cd02340 2 ICDGCQG--PIVGVRYKCLVCPDYDLCESCEAK 32 (43)
T ss_pred CCCCCCC--cCcCCeEECCCCCCccchHHhhCc
Confidence 5888988 345568999998 46677777543
No 226
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=47.42 E-value=9.1 Score=35.26 Aligned_cols=36 Identities=25% Similarity=0.624 Sum_probs=29.6
Q ss_pred ccccccccccccccccc--cccccccccceEcCCCCCC
Q 022481 9 QEATRCDVCKCSFNTFR--RRHHCRCCGRTLCHEHSSD 44 (296)
Q Consensus 9 ~~~~~C~~C~~~f~~~~--r~hhCr~Cg~~~C~~c~~~ 44 (296)
...+.|..|........ -|+||-.||..||.-|+..
T Consensus 366 ~N~krCP~C~v~IEr~eGCnKM~C~~c~~~fc~~c~~~ 403 (445)
T KOG1814|consen 366 SNSKRCPKCKVVIERSEGCNKMHCTKCGTYFCWICAEL 403 (445)
T ss_pred hcCCCCCcccceeecCCCccceeeccccccceeehhhh
Confidence 35788999998776554 4899999999999999754
No 227
>PF07503 zf-HYPF: HypF finger; InterPro: IPR011125 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Proteins of the HypF family are involved in the maturation and regulation of hydrogenase []. In the N terminus they appear to have two zinc finger domains that are similar to those found in the DnaJ chaperone []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3TTD_A 3TSQ_A 3TTC_A 3TSP_A 3TTF_A 3TSU_A.
Probab=47.39 E-value=6.4 Score=22.95 Aligned_cols=28 Identities=25% Similarity=0.557 Sum_probs=15.8
Q ss_pred cccccccc-cccccccccccccceEcCCCCCC
Q 022481 14 CDVCKCSF-NTFRRRHHCRCCGRTLCHEHSSD 44 (296)
Q Consensus 14 C~~C~~~f-~~~~r~hhCr~Cg~~~C~~c~~~ 44 (296)
|..|.+.+ ....||+|=. .+-|..|...
T Consensus 2 C~~C~~Ey~~p~~RR~~~~---~isC~~CGPr 30 (35)
T PF07503_consen 2 CDDCLKEYFDPSNRRFHYQ---FISCTNCGPR 30 (35)
T ss_dssp -HHHHHHHCSTTSTTTT-T---T--BTTCC-S
T ss_pred CHHHHHHHcCCCCCcccCc---CccCCCCCCC
Confidence 77888875 5778888743 4556666543
No 228
>COG1997 RPL43A Ribosomal protein L37AE/L43A [Translation, ribosomal structure and biogenesis]
Probab=47.36 E-value=11 Score=26.87 Aligned_cols=28 Identities=21% Similarity=0.529 Sum_probs=15.7
Q ss_pred ccccccccccccc---cccccccccccceEcC
Q 022481 11 ATRCDVCKCSFNT---FRRRHHCRCCGRTLCH 39 (296)
Q Consensus 11 ~~~C~~C~~~f~~---~~r~hhCr~Cg~~~C~ 39 (296)
...|..|+++ .. -.....|+.||..|=.
T Consensus 35 ~~~Cp~C~~~-~VkR~a~GIW~C~kCg~~fAG 65 (89)
T COG1997 35 KHVCPFCGRT-TVKRIATGIWKCRKCGAKFAG 65 (89)
T ss_pred CCcCCCCCCc-ceeeeccCeEEcCCCCCeecc
Confidence 3567777765 21 1235567777766633
No 229
>cd02249 ZZ Zinc finger, ZZ type. Zinc finger present in dystrophin, CBP/p300 and many other proteins. The ZZ motif coordinates one or two zinc ions and most likely participates in ligand binding or molecular scaffolding. Many proteins containing ZZ motifs have other zinc-binding motifs as well, and the majority serve as scaffolds in pathways involving acetyltransferase, protein kinase, or ubiqitin-related activity. ZZ proteins can be grouped into the following functional classes: chromatin modifying, cytoskeletal scaffolding, ubiquitin binding or conjugating, and membrane receptor or ion-channel modifying proteins.
Probab=46.68 E-value=6.6 Score=24.24 Aligned_cols=29 Identities=31% Similarity=0.650 Sum_probs=19.6
Q ss_pred cccccccccccccccccccccc-ceEcCCCCC
Q 022481 13 RCDVCKCSFNTFRRRHHCRCCG-RTLCHEHSS 43 (296)
Q Consensus 13 ~C~~C~~~f~~~~r~hhCr~Cg-~~~C~~c~~ 43 (296)
.|..|++.+ ...|.+|..|. .-+|..|-.
T Consensus 2 ~C~~C~~~i--~g~r~~C~~C~d~dLC~~Cf~ 31 (46)
T cd02249 2 SCDGCLKPI--VGVRYHCLVCEDFDLCSSCYA 31 (46)
T ss_pred CCcCCCCCC--cCCEEECCCCCCCcCHHHHHC
Confidence 488898843 44788888886 445655543
No 230
>COG0675 Transposase and inactivated derivatives [DNA replication, recombination, and repair]
Probab=46.44 E-value=12 Score=33.46 Aligned_cols=27 Identities=22% Similarity=0.538 Sum_probs=20.8
Q ss_pred CccccccccccccccccccccccccccceE
Q 022481 8 FQEATRCDVCKCSFNTFRRRHHCRCCGRTL 37 (296)
Q Consensus 8 ~~~~~~C~~C~~~f~~~~r~hhCr~Cg~~~ 37 (296)
....+.|..|+. +..|.+.|..||..+
T Consensus 306 ~~tS~~C~~cg~---~~~r~~~C~~cg~~~ 332 (364)
T COG0675 306 YYTSKTCPCCGH---LSGRLFKCPRCGFVH 332 (364)
T ss_pred CCCcccccccCC---ccceeEECCCCCCee
Confidence 345689999999 446778888888776
No 231
>KOG1356 consensus Putative transcription factor 5qNCA, contains JmjC domain [Transcription]
Probab=45.56 E-value=9.2 Score=38.45 Aligned_cols=34 Identities=24% Similarity=0.579 Sum_probs=27.6
Q ss_pred ccccccccccccccccccccccccceEcCCCCCCce
Q 022481 11 ATRCDVCKCSFNTFRRRHHCRCCGRTLCHEHSSDQM 46 (296)
Q Consensus 11 ~~~C~~C~~~f~~~~r~hhCr~Cg~~~C~~c~~~~~ 46 (296)
...|..|.+ ++|+-..-|+.||..||-.|...+.
T Consensus 229 ~~mC~~C~~--tlfn~hw~C~~C~~~~Cl~C~r~~~ 262 (889)
T KOG1356|consen 229 REMCDRCET--TLFNIHWRCPRCGFGVCLDCYRKWY 262 (889)
T ss_pred chhhhhhcc--cccceeEEccccCCeeeecchhhcc
Confidence 467999999 4454467799999999999998764
No 232
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=45.45 E-value=3.7 Score=22.80 Aligned_cols=28 Identities=29% Similarity=0.546 Sum_probs=9.9
Q ss_pred ccccccccccccccccccccccceEcCCC
Q 022481 13 RCDVCKCSFNTFRRRHHCRCCGRTLCHEH 41 (296)
Q Consensus 13 ~C~~C~~~f~~~~r~hhCr~Cg~~~C~~c 41 (296)
.|..|+++... ..-++|..|..++...|
T Consensus 2 ~C~~C~~~~~~-~~~Y~C~~Cdf~lH~~C 29 (30)
T PF07649_consen 2 RCDACGKPIDG-GWFYRCSECDFDLHEEC 29 (30)
T ss_dssp --TTTS----S---EEE-TTT-----HHH
T ss_pred cCCcCCCcCCC-CceEECccCCCccChhc
Confidence 57888887765 45688888877764433
No 233
>PLN02400 cellulose synthase
Probab=45.27 E-value=17 Score=37.93 Aligned_cols=55 Identities=15% Similarity=0.384 Sum_probs=40.6
Q ss_pred cccccccccccccccc---cccccccccceEcCCCCCCceecCCCCCCCceeccccchhhhcccC
Q 022481 10 EATRCDVCKCSFNTFR---RRHHCRCCGRTLCHEHSSDQMTLPQFGIHTNVRVCADCFNSSSRTG 71 (296)
Q Consensus 10 ~~~~C~~C~~~f~~~~---r~hhCr~Cg~~~C~~c~~~~~~~~~~~~~~~~rvC~~C~~~~~~~~ 71 (296)
....|++|+-..++.. =-.-|..||.-+|..|-.+.. ..-..+|..|...+++..
T Consensus 35 ~gqiCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCYEYER-------keGnq~CPQCkTrYkR~K 92 (1085)
T PLN02400 35 NGQICQICGDDVGVTETGDVFVACNECAFPVCRPCYEYER-------KDGTQCCPQCKTRYRRHK 92 (1085)
T ss_pred CCceeeecccccCcCCCCCEEEEEccCCCccccchhheec-------ccCCccCcccCCcccccc
Confidence 4569999999766321 126799999999999985532 345688999988887664
No 234
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=45.23 E-value=12 Score=31.32 Aligned_cols=45 Identities=11% Similarity=0.079 Sum_probs=34.8
Q ss_pred ccccccceEcCCCCCC-ceecCCC----CCCCceeccccchhhhcccCCC
Q 022481 29 HCRCCGRTLCHEHSSD-QMTLPQF----GIHTNVRVCADCFNSSSRTGKD 73 (296)
Q Consensus 29 hCr~Cg~~~C~~c~~~-~~~~~~~----~~~~~~rvC~~C~~~~~~~~~~ 73 (296)
.|...|+.||..|-.. ...+|.. .-.++..||+..+..|......
T Consensus 2 ~C~Y~G~yyC~~CH~~~~~vIParil~~WDf~~~pVs~~a~~~L~~~~~~ 51 (202)
T PF13901_consen 2 FCDYTGKYYCSSCHWNDTSVIPARILHNWDFRPYPVSRFAKQFLDQIWSK 51 (202)
T ss_pred ccCCCCCcCCCCCCCCCceeccHHHHHhcCCCccHHHHHHHHHHHHhccC
Confidence 5899999999999766 4666633 2247889999999999876544
No 235
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=45.15 E-value=15 Score=38.37 Aligned_cols=57 Identities=14% Similarity=0.350 Sum_probs=41.3
Q ss_pred Cccccccccccccccccc---cccccccccceEcCCCCCCceecCCCCCCCceeccccchhhhcccC
Q 022481 8 FQEATRCDVCKCSFNTFR---RRHHCRCCGRTLCHEHSSDQMTLPQFGIHTNVRVCADCFNSSSRTG 71 (296)
Q Consensus 8 ~~~~~~C~~C~~~f~~~~---r~hhCr~Cg~~~C~~c~~~~~~~~~~~~~~~~rvC~~C~~~~~~~~ 71 (296)
......|.+|+-..++.. =-.-|.-||.-+|..|-.+.. ..-...|-.|...+++..
T Consensus 14 ~~~~qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYEYEr-------~eG~q~CPqCktrYkr~k 73 (1079)
T PLN02638 14 HGGGQVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYEYER-------KDGNQSCPQCKTKYKRHK 73 (1079)
T ss_pred ccCCceeeecccccCcCCCCCEEEEeccCCCccccchhhhhh-------hcCCccCCccCCchhhhc
Confidence 345679999999766321 127899999999999975532 345678999988877554
No 236
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=45.10 E-value=9.5 Score=30.14 Aligned_cols=13 Identities=15% Similarity=0.611 Sum_probs=8.6
Q ss_pred ccccccccccccc
Q 022481 11 ATRCDVCKCSFNT 23 (296)
Q Consensus 11 ~~~C~~C~~~f~~ 23 (296)
.-.|..|++.|++
T Consensus 99 ~Y~Cp~C~~~y~~ 111 (147)
T smart00531 99 YYKCPNCQSKYTF 111 (147)
T ss_pred EEECcCCCCEeeH
Confidence 3457777777764
No 237
>PF05443 ROS_MUCR: ROS/MUCR transcriptional regulator protein; InterPro: IPR008807 This family consists of several ROS/MUCR transcriptional regulator proteins. The ros chromosomal gene is present in octopine and nopaline strains of Agrobacterium tumefaciens as well as in Rhizobium meliloti (Sinorhizobium meliloti). This gene encodes a 15.5 kDa protein that specifically represses the virC and virD operons in the virulence region of the Ti plasmid [] and is necessary for succinoglycan production []. S. meliloti can produce two types of acidic exopolysaccharides, succinoglycan and galactoglucan, that are interchangeable for infection of Medicago sativa (Alfalfa) nodules. MucR from S. meliloti acts as a transcriptional repressor that blocks the expression of the exp genes responsible for galactoglucan production therefore allowing the exclusive production of succinoglycan [].; GO: 0003677 DNA binding, 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2JSP_A.
Probab=44.65 E-value=7.4 Score=30.21 Aligned_cols=18 Identities=33% Similarity=0.676 Sum_probs=10.7
Q ss_pred ccccccccccccccccccc
Q 022481 10 EATRCDVCKCSFNTFRRRH 28 (296)
Q Consensus 10 ~~~~C~~C~~~f~~~~r~h 28 (296)
+.-.|..|+++|..+ +||
T Consensus 71 d~i~clecGk~~k~L-krH 88 (132)
T PF05443_consen 71 DYIICLECGKKFKTL-KRH 88 (132)
T ss_dssp S-EE-TBT--EESBH-HHH
T ss_pred CeeEEccCCcccchH-HHH
Confidence 445799999999988 444
No 238
>KOG3795 consensus Uncharacterized conserved protein [Function unknown]
Probab=44.45 E-value=9.6 Score=30.82 Aligned_cols=24 Identities=25% Similarity=0.614 Sum_probs=19.1
Q ss_pred cccccccccccccccc---eEcCCCCC
Q 022481 20 SFNTFRRRHHCRCCGR---TLCHEHSS 43 (296)
Q Consensus 20 ~f~~~~r~hhCr~Cg~---~~C~~c~~ 43 (296)
.|.....||.|+.||. .||-.|.-
T Consensus 8 ~~d~ieGRs~C~~C~~SRkFfCY~C~V 34 (230)
T KOG3795|consen 8 SFDPIEGRSTCPGCKSSRKFFCYDCRV 34 (230)
T ss_pred ccCcccccccCCCCCCcceEEEEeecc
Confidence 4566788999999986 48988863
No 239
>PF09297 zf-NADH-PPase: NADH pyrophosphatase zinc ribbon domain; InterPro: IPR015376 This domain has a zinc ribbon structure and is often found between two NUDIX domains.; GO: 0016787 hydrolase activity, 0046872 metal ion binding; PDB: 1VK6_A 2GB5_A.
Probab=44.43 E-value=14 Score=20.75 Aligned_cols=25 Identities=20% Similarity=0.454 Sum_probs=12.1
Q ss_pred EcCCCCCCceecCCCCCCCceeccccchh
Q 022481 37 LCHEHSSDQMTLPQFGIHTNVRVCADCFN 65 (296)
Q Consensus 37 ~C~~c~~~~~~~~~~~~~~~~rvC~~C~~ 65 (296)
||..|.......+. ...|+|..|-.
T Consensus 5 fC~~CG~~t~~~~~----g~~r~C~~Cg~ 29 (32)
T PF09297_consen 5 FCGRCGAPTKPAPG----GWARRCPSCGH 29 (32)
T ss_dssp B-TTT--BEEE-SS----SS-EEESSSS-
T ss_pred ccCcCCccccCCCC----cCEeECCCCcC
Confidence 67777655443322 46899988853
No 240
>KOG3896 consensus Dynactin, subunit p62 [Cell motility]
Probab=44.08 E-value=9.4 Score=34.21 Aligned_cols=29 Identities=21% Similarity=0.569 Sum_probs=24.7
Q ss_pred ccccccccccccccccccceEcCCCCCCce
Q 022481 17 CKCSFNTFRRRHHCRCCGRTLCHEHSSDQM 46 (296)
Q Consensus 17 C~~~f~~~~r~hhCr~Cg~~~C~~c~~~~~ 46 (296)
|+ .|..+.--..||+|-++-|..|..+.+
T Consensus 15 cg-~~~pl~~L~FCRyC~klrc~~Cv~hEv 43 (449)
T KOG3896|consen 15 CG-KFRPLPDLVFCRYCFKLRCDDCVLHEV 43 (449)
T ss_pred cc-ccccccceeeeeccccccccccccccc
Confidence 55 688888889999999999999987754
No 241
>smart00291 ZnF_ZZ Zinc-binding domain, present in Dystrophin, CREB-binding protein. Putative zinc-binding domain present in dystrophin-like proteins, and CREB-binding protein/p300 homologues. The ZZ in dystrophin appears to bind calmodulin. A missense mutation of one of the conserved cysteines in dystrophin results in a patient with Duchenne muscular dystrophy [3].
Probab=43.93 E-value=10 Score=23.12 Aligned_cols=29 Identities=31% Similarity=0.739 Sum_probs=17.7
Q ss_pred ccccccccccccccccccccccccc-eEcCCC
Q 022481 11 ATRCDVCKCSFNTFRRRHHCRCCGR-TLCHEH 41 (296)
Q Consensus 11 ~~~C~~C~~~f~~~~r~hhCr~Cg~-~~C~~c 41 (296)
...|..|++.+ ...|+||..|.. -+|..|
T Consensus 4 ~~~C~~C~~~i--~g~ry~C~~C~d~dlC~~C 33 (44)
T smart00291 4 SYSCDTCGKPI--VGVRYHCLVCPDYDLCQSC 33 (44)
T ss_pred CcCCCCCCCCC--cCCEEECCCCCCccchHHH
Confidence 34688888844 455778887732 244444
No 242
>TIGR00244 transcriptional regulator NrdR. Members of this almost entirely bacterial family contain an ATP cone domain (PFAM:PF03477). There is never more than one member per genome. Common gene symbols given include nrdR, ybaD, ribX and ytcG. The member from Streptomyces coelicolor is found upstream in the operon of the class II oxygen-independent ribonucleotide reductase gene nrdJ and was shown to repress nrdJ expression. Many members of this family are found near genes for riboflavin biosynthesis in Gram-negative bacteria, suggesting a role in that pathway. However, a phylogenetic profiling study associates members of this family with the presence of a palindromic signal with consensus acaCwAtATaTwGtgt, termed the NrdR-box, an upstream element for most operons for ribonucleotide reductase of all three classes in bacterial genomes.
Probab=43.84 E-value=11 Score=29.67 Aligned_cols=13 Identities=38% Similarity=0.864 Sum_probs=5.9
Q ss_pred ccccccccccceE
Q 022481 25 RRRHHCRCCGRTL 37 (296)
Q Consensus 25 ~r~hhCr~Cg~~~ 37 (296)
+||..|-.||+-|
T Consensus 26 RRRReC~~C~~RF 38 (147)
T TIGR00244 26 RRRRECLECHERF 38 (147)
T ss_pred eecccCCccCCcc
Confidence 3444444444443
No 243
>PF15616 TerY-C: TerY-C metal binding domain
Probab=43.17 E-value=13 Score=28.72 Aligned_cols=25 Identities=28% Similarity=0.805 Sum_probs=19.7
Q ss_pred ccccccccccccccccccccccccceEcCC
Q 022481 11 ATRCDVCKCSFNTFRRRHHCRCCGRTLCHE 40 (296)
Q Consensus 11 ~~~C~~C~~~f~~~~r~hhCr~Cg~~~C~~ 40 (296)
...|..|+..|.+. -| .||+|+|..
T Consensus 77 ~PgCP~CGn~~~fa----~C-~CGkl~Ci~ 101 (131)
T PF15616_consen 77 APGCPHCGNQYAFA----VC-GCGKLFCID 101 (131)
T ss_pred CCCCCCCcChhcEE----Ee-cCCCEEEeC
Confidence 36899999998874 46 799999853
No 244
>COG4855 Uncharacterized protein conserved in archaea [Function unknown]
Probab=43.05 E-value=4.2 Score=27.24 Aligned_cols=62 Identities=19% Similarity=0.378 Sum_probs=40.1
Q ss_pred CCccccccccccccccccccccccccccceEcCCCCCCc-eecCCCCC---------CCceeccccchhhhc
Q 022481 7 AFQEATRCDVCKCSFNTFRRRHHCRCCGRTLCHEHSSDQ-MTLPQFGI---------HTNVRVCADCFNSSS 68 (296)
Q Consensus 7 ~~~~~~~C~~C~~~f~~~~r~hhCr~Cg~~~C~~c~~~~-~~~~~~~~---------~~~~rvC~~C~~~~~ 68 (296)
.|.....|..|...=.-..----|-.||+-+|-.+..+. .++-.-++ .-|.-+|..|++.+.
T Consensus 3 ~~~~~mKCY~C~eeGKDtdAV~iCIVCG~GlC~EHli~eE~p~w~G~YP~p~k~~K~~lpRilC~~C~~a~~ 74 (76)
T COG4855 3 RWSNMMKCYDCAEEGKDTDAVGICIVCGMGLCMEHLIREETPMWGGGYPFPAKKLKKTLPRILCVECHEAIK 74 (76)
T ss_pred chhhhhHHHHHHHhCCCcccEEEEEEeCchHHHHHHHhhhcccccCCCCCcchhhhccCCceeeHHHHHHhh
Confidence 356667788887655444455679999999998776543 22222221 224568999999875
No 245
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=42.94 E-value=5.5 Score=29.64 Aligned_cols=56 Identities=13% Similarity=0.303 Sum_probs=34.8
Q ss_pred cccccccccccccccccccccc------ccc---cceEcCCCCCCceec-CCCCCCCceeccccchhh
Q 022481 9 QEATRCDVCKCSFNTFRRRHHC------RCC---GRTLCHEHSSDQMTL-PQFGIHTNVRVCADCFNS 66 (296)
Q Consensus 9 ~~~~~C~~C~~~f~~~~r~hhC------r~C---g~~~C~~c~~~~~~~-~~~~~~~~~rvC~~C~~~ 66 (296)
.....|.+|.++.. ..+..| ..| ...||..|...+... +......+..+|..|..+
T Consensus 5 ~~g~~CHqCrqKt~--~~~~~C~~~~~~~~C~~~~~~fC~~CL~~ryge~~~ev~~~~~W~CP~Crgi 70 (105)
T PF10497_consen 5 VNGKTCHQCRQKTL--DFKTICTGHWKNSSCRGCRGKFCGGCLRNRYGENVEEVLEDPNWKCPKCRGI 70 (105)
T ss_pred CCCCCchhhcCCCC--CCceEcCCCCCCCCCccCcceehHhHHHHHHhhhHHHHhcCCceECCCCCCe
Confidence 34578999988543 222333 666 999999997765322 111123567888888764
No 246
>PHA00732 hypothetical protein
Probab=42.92 E-value=17 Score=25.53 Aligned_cols=11 Identities=27% Similarity=0.782 Sum_probs=9.1
Q ss_pred ccccccccccc
Q 022481 13 RCDVCKCSFNT 23 (296)
Q Consensus 13 ~C~~C~~~f~~ 23 (296)
.|..|++.|..
T Consensus 3 ~C~~Cgk~F~s 13 (79)
T PHA00732 3 KCPICGFTTVT 13 (79)
T ss_pred cCCCCCCccCC
Confidence 58999999974
No 247
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=42.67 E-value=22 Score=30.25 Aligned_cols=39 Identities=15% Similarity=0.102 Sum_probs=20.0
Q ss_pred cCCCCCCCCCCCCCccccccChHHHHHHHHcCCHHHHHHHHHcCCC
Q 022481 178 FNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVD 223 (296)
Q Consensus 178 l~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~gad 223 (296)
++.|+.-|..+....+ +=-.|...++.+.-+.|++.|+.
T Consensus 2 le~ga~wn~id~~n~t-------~gd~a~ern~~rly~~lv~~gv~ 40 (271)
T KOG1709|consen 2 LEYGAGWNFIDYENKT-------VGDLALERNQSRLYRRLVEAGVP 40 (271)
T ss_pred cccCCCccccChhhCC-------chHHHHHccHHHHHHHHHHcCCc
Confidence 4455555555544444 44455555555555555555543
No 248
>KOG2593 consensus Transcription initiation factor IIE, alpha subunit [Transcription]
Probab=42.47 E-value=9.9 Score=35.28 Aligned_cols=34 Identities=21% Similarity=0.601 Sum_probs=26.6
Q ss_pred cccccccccccccc---------ccccccccccceEcCCCCCC
Q 022481 11 ATRCDVCKCSFNTF---------RRRHHCRCCGRTLCHEHSSD 44 (296)
Q Consensus 11 ~~~C~~C~~~f~~~---------~r~hhCr~Cg~~~C~~c~~~ 44 (296)
.-.|+.|+++|+.+ ....||-.||.-+=..|+..
T Consensus 128 ~Y~Cp~C~kkyt~Lea~~L~~~~~~~F~C~~C~gelveDe~~~ 170 (436)
T KOG2593|consen 128 GYVCPNCQKKYTSLEALQLLDNETGEFHCENCGGELVEDENKL 170 (436)
T ss_pred cccCCccccchhhhHHHHhhcccCceEEEecCCCchhcccccC
Confidence 45799999999843 36899999988887777643
No 249
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=42.43 E-value=3.8 Score=36.74 Aligned_cols=17 Identities=29% Similarity=0.788 Sum_probs=14.2
Q ss_pred ccccccccccccccccc
Q 022481 10 EATRCDVCKCSFNTFRR 26 (296)
Q Consensus 10 ~~~~C~~C~~~f~~~~r 26 (296)
.-+.|.+|.++|+.|+.
T Consensus 40 ~gkECKICtrPfT~Frw 56 (377)
T KOG0153|consen 40 YGKECKICTRPFTIFRW 56 (377)
T ss_pred cCCccceecCcceEEEe
Confidence 34789999999999874
No 250
>PRK04023 DNA polymerase II large subunit; Validated
Probab=42.32 E-value=17 Score=37.60 Aligned_cols=47 Identities=17% Similarity=0.429 Sum_probs=31.5
Q ss_pred cccccccccccccccccccccccccc-----eEcCCCCCCceecCCCCCCCceeccccchhhhccc
Q 022481 10 EATRCDVCKCSFNTFRRRHHCRCCGR-----TLCHEHSSDQMTLPQFGIHTNVRVCADCFNSSSRT 70 (296)
Q Consensus 10 ~~~~C~~C~~~f~~~~r~hhCr~Cg~-----~~C~~c~~~~~~~~~~~~~~~~rvC~~C~~~~~~~ 70 (296)
....|..|++... ...|..||. .||..|.... ....|..|-..+...
T Consensus 625 g~RfCpsCG~~t~----~frCP~CG~~Te~i~fCP~CG~~~----------~~y~CPKCG~El~~~ 676 (1121)
T PRK04023 625 GRRKCPSCGKETF----YRRCPFCGTHTEPVYRCPRCGIEV----------EEDECEKCGREPTPY 676 (1121)
T ss_pred cCccCCCCCCcCC----cccCCCCCCCCCcceeCccccCcC----------CCCcCCCCCCCCCcc
Confidence 3568999999752 357999995 4899994321 113488887665443
No 251
>cd00202 ZnF_GATA Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] promoter elements; a subset of family members may also bind protein; zinc-finger consensus topology is C-X(2)-C-X(17)-C-X(2)-C
Probab=41.96 E-value=20 Score=23.06 Aligned_cols=35 Identities=17% Similarity=0.284 Sum_probs=22.6
Q ss_pred cCCCCCCceecCCCCCCCceeccccchhhhcccCC
Q 022481 38 CHEHSSDQMTLPQFGIHTNVRVCADCFNSSSRTGK 72 (296)
Q Consensus 38 C~~c~~~~~~~~~~~~~~~~rvC~~C~~~~~~~~~ 72 (296)
|..|....-++-..+......+|+.|.........
T Consensus 2 C~~C~~~~Tp~WR~g~~~~~~LCNaCgl~~~k~~~ 36 (54)
T cd00202 2 CSNCGTTTTPLWRRGPSGGSTLCNACGLYWKKHGV 36 (54)
T ss_pred CCCCCCCCCcccccCCCCcchHHHHHHHHHHhcCC
Confidence 55665555555455544667899999887766643
No 252
>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A ....
Probab=41.93 E-value=14 Score=19.59 Aligned_cols=13 Identities=23% Similarity=0.897 Sum_probs=8.9
Q ss_pred ccccccccccceE
Q 022481 25 RRRHHCRCCGRTL 37 (296)
Q Consensus 25 ~r~hhCr~Cg~~~ 37 (296)
.|.+.|..||+.|
T Consensus 12 ~k~~~C~~C~k~F 24 (26)
T PF13465_consen 12 EKPYKCPYCGKSF 24 (26)
T ss_dssp SSSEEESSSSEEE
T ss_pred CCCCCCCCCcCee
Confidence 3567777777765
No 253
>KOG3836 consensus HLH transcription factor EBF/Olf-1 and related DNA binding proteins [Transcription]
Probab=41.90 E-value=6.5 Score=38.03 Aligned_cols=54 Identities=24% Similarity=0.343 Sum_probs=39.3
Q ss_pred HHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCC
Q 022481 205 AIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMD 258 (296)
Q Consensus 205 A~~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~iv~~LL~~ga~~~ 258 (296)
|+..+....+-.|++.|+..+..|..|.+|+|++...|..++++.++....+++
T Consensus 403 ~~~~~~ss~v~~lik~~~~~~~~d~f~~~p~~~~~~sgdp~~~~~~~~~~~~~~ 456 (605)
T KOG3836|consen 403 AALNNSSSLVFTLIKKGAHPNDDDKFGFTPLHIPQISGDPRIIQLLLNCKVAIS 456 (605)
T ss_pred hhhcCCccceeeeecccCccchhcccccccccccCCCCCHHHhhhhhhhhhhhh
Confidence 444455556666777788888888888888888888888888888776544433
No 254
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=41.88 E-value=6.5 Score=35.05 Aligned_cols=50 Identities=22% Similarity=0.464 Sum_probs=30.6
Q ss_pred ccccccccc--cccccc-ccccccccceEcCCCCCCceecCCCCCCCceeccccchhhhccc
Q 022481 12 TRCDVCKCS--FNTFRR-RHHCRCCGRTLCHEHSSDQMTLPQFGIHTNVRVCADCFNSSSRT 70 (296)
Q Consensus 12 ~~C~~C~~~--f~~~~r-~hhCr~Cg~~~C~~c~~~~~~~~~~~~~~~~rvC~~C~~~~~~~ 70 (296)
..|..|... ++.-.+ -.+ .||+.||..|....... ....|..|...+...
T Consensus 4 ~~CP~Ck~~~y~np~~kl~i~--~CGH~~C~sCv~~l~~~-------~~~~CP~C~~~lrk~ 56 (309)
T TIGR00570 4 QGCPRCKTTKYRNPSLKLMVN--VCGHTLCESCVDLLFVR-------GSGSCPECDTPLRKN 56 (309)
T ss_pred CCCCcCCCCCccCcccccccC--CCCCcccHHHHHHHhcC-------CCCCCCCCCCccchh
Confidence 479999884 332111 223 79999999998764321 123688886655443
No 255
>TIGR01384 TFS_arch transcription factor S, archaeal. There has been an apparent duplication event in the Halobacteriaceae lineage (Haloarcula, Haloferax, Haloquadratum, Halobacterium and Natromonas). There appears to be a separate duplication in Methanosphaera stadtmanae.
Probab=41.72 E-value=14 Score=27.16 Aligned_cols=10 Identities=20% Similarity=0.547 Sum_probs=4.9
Q ss_pred cccccccccc
Q 022481 13 RCDVCKCSFN 22 (296)
Q Consensus 13 ~C~~C~~~f~ 22 (296)
.|..|+..+.
T Consensus 2 fC~~Cg~~l~ 11 (104)
T TIGR01384 2 FCPKCGSLMT 11 (104)
T ss_pred CCcccCcccc
Confidence 3555555443
No 256
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=41.52 E-value=17 Score=23.46 Aligned_cols=28 Identities=29% Similarity=0.584 Sum_probs=17.1
Q ss_pred cccccccccccccccccccccccccceE
Q 022481 10 EATRCDVCKCSFNTFRRRHHCRCCGRTL 37 (296)
Q Consensus 10 ~~~~C~~C~~~f~~~~r~hhCr~Cg~~~ 37 (296)
....|..|+++|..-.-..-|.-||..+
T Consensus 4 ~~~~C~~Cg~~~~~~dDiVvCp~Cgapy 31 (54)
T PF14446_consen 4 EGCKCPVCGKKFKDGDDIVVCPECGAPY 31 (54)
T ss_pred cCccChhhCCcccCCCCEEECCCCCCcc
Confidence 4567888999886544444455554443
No 257
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=41.25 E-value=6 Score=34.23 Aligned_cols=47 Identities=17% Similarity=0.339 Sum_probs=29.3
Q ss_pred cccccccccccccccccccccccceEcCCCCCCceecCCCCCCCceeccccchhhhc
Q 022481 12 TRCDVCKCSFNTFRRRHHCRCCGRTLCHEHSSDQMTLPQFGIHTNVRVCADCFNSSS 68 (296)
Q Consensus 12 ~~C~~C~~~f~~~~r~hhCr~Cg~~~C~~c~~~~~~~~~~~~~~~~rvC~~C~~~~~ 68 (296)
-.|.+|-..-. .--|+.||+|||..|.-.. ...+..-.|.-|-.+..
T Consensus 216 ~kC~lC~e~~~----~ps~t~CgHlFC~~Cl~~~------~t~~k~~~CplCRak~~ 262 (271)
T COG5574 216 YKCFLCLEEPE----VPSCTPCGHLFCLSCLLIS------WTKKKYEFCPLCRAKVY 262 (271)
T ss_pred cceeeeecccC----CcccccccchhhHHHHHHH------HHhhccccCchhhhhcc
Confidence 35777766333 3468999999999996442 11233445777765543
No 258
>PF10170 C6_DPF: Cysteine-rich domain; InterPro: IPR018785 This entry represents the N-terminal approximately 100 amino acids of a family of proteins found in a range of organisms, including human, chicken and Drosophila [, , ]. It contains between six and eight highly conserved cysteine residues and a characteristic DPF sequence motif. One member is putatively named as receptor for egg jelly protein but this could not confirmed.
Probab=41.11 E-value=11 Score=27.38 Aligned_cols=30 Identities=27% Similarity=0.669 Sum_probs=23.4
Q ss_pred ccccccccceEcC--CCCCCceecCCCCCCCceeccccchhh
Q 022481 27 RHHCRCCGRTLCH--EHSSDQMTLPQFGIHTNVRVCADCFNS 66 (296)
Q Consensus 27 ~hhCr~Cg~~~C~--~c~~~~~~~~~~~~~~~~rvC~~C~~~ 66 (296)
--+|..||+.||. +||-+. ..|.|..|...
T Consensus 49 Ga~CS~C~~~VC~~~~CSlFY----------tkrFC~pC~~~ 80 (97)
T PF10170_consen 49 GAPCSICGKPVCVGQDCSLFY----------TKRFCLPCVKR 80 (97)
T ss_pred CccccccCCceEcCCCccEEe----------eCceeHHHHHH
Confidence 3689999999996 487542 46899999865
No 259
>PF14445 Prok-RING_2: Prokaryotic RING finger family 2
Probab=40.71 E-value=3.1 Score=26.21 Aligned_cols=46 Identities=26% Similarity=0.584 Sum_probs=33.5
Q ss_pred ccccccccccccccccccccccccceEcCCCCCCceecCCCCCCCceeccccchhhhc
Q 022481 11 ATRCDVCKCSFNTFRRRHHCRCCGRTLCHEHSSDQMTLPQFGIHTNVRVCADCFNSSS 68 (296)
Q Consensus 11 ~~~C~~C~~~f~~~~r~hhCr~Cg~~~C~~c~~~~~~~~~~~~~~~~rvC~~C~~~~~ 68 (296)
.-.|..|+..|..- .-..|-.||+--|+.|-.. ....|+.|-..++
T Consensus 7 ry~CDLCn~~~p~~-~LRQCvlCGRWaC~sCW~d-----------eYY~CksC~Gii~ 52 (57)
T PF14445_consen 7 RYSCDLCNSSHPIS-ELRQCVLCGRWACNSCWQD-----------EYYTCKSCNGIIN 52 (57)
T ss_pred hHhHHhhcccCcHH-HHHHHhhhchhhhhhhhhh-----------hHhHHHhhhchhh
Confidence 45788999988743 3357999999999999643 3456777776654
No 260
>COG3058 FdhE Uncharacterized protein involved in formate dehydrogenase formation [Posttranslational modification, protein turnover, chaperones]
Probab=40.70 E-value=9.7 Score=33.25 Aligned_cols=67 Identities=18% Similarity=0.382 Sum_probs=43.4
Q ss_pred CCCCCcccccccccccc-ccc---c------cccccccccc------ceEcCCCCCCc-eecCCCCC----CCceecccc
Q 022481 4 EPPAFQEATRCDVCKCS-FNT---F------RRRHHCRCCG------RTLCHEHSSDQ-MTLPQFGI----HTNVRVCAD 62 (296)
Q Consensus 4 ~w~~~~~~~~C~~C~~~-f~~---~------~r~hhCr~Cg------~~~C~~c~~~~-~~~~~~~~----~~~~rvC~~ 62 (296)
.|.+.+....|..|+.. -.. + -|--||..|- ++-|.+|-..+ ..+-.+.. .-..-+|+.
T Consensus 178 ~~~e~e~~~~CPvCGS~PvaSmV~~g~~~~GlRYL~CslC~teW~~VR~KC~nC~~t~~l~y~sl~s~E~A~vkAEtC~~ 257 (308)
T COG3058 178 ARVENESRQYCPVCGSMPVASMVQIGETEQGLRYLHCSLCETEWHYVRVKCSNCEQSKKLHYWSLESSELAAVKAETCGD 257 (308)
T ss_pred ccccccccccCCCcCCCCcceeeeecCccccchhhhhhhHHHHHHHHHHHhccccccCCccceeccchhhhHhhhhcCCc
Confidence 57788888999999873 211 1 2778999986 56788886543 22222221 123568999
Q ss_pred chhhhccc
Q 022481 63 CFNSSSRT 70 (296)
Q Consensus 63 C~~~~~~~ 70 (296)
|...|+-.
T Consensus 258 C~sYlKil 265 (308)
T COG3058 258 CNSYLKIL 265 (308)
T ss_pred HHHHHHHH
Confidence 98877643
No 261
>PTZ00218 40S ribosomal protein S29; Provisional
Probab=40.65 E-value=14 Score=23.82 Aligned_cols=13 Identities=31% Similarity=0.991 Sum_probs=9.3
Q ss_pred eeccccchhhhcc
Q 022481 57 VRVCADCFNSSSR 69 (296)
Q Consensus 57 ~rvC~~C~~~~~~ 69 (296)
.-+|..||.++..
T Consensus 34 L~~CRqCFRe~A~ 46 (54)
T PTZ00218 34 LNVCRQCFRENAE 46 (54)
T ss_pred cchhhHHHHHhhH
Confidence 4588888877643
No 262
>PF13248 zf-ribbon_3: zinc-ribbon domain
Probab=40.21 E-value=15 Score=19.60 Aligned_cols=6 Identities=33% Similarity=1.082 Sum_probs=2.6
Q ss_pred cccccc
Q 022481 14 CDVCKC 19 (296)
Q Consensus 14 C~~C~~ 19 (296)
|..|++
T Consensus 5 Cp~Cg~ 10 (26)
T PF13248_consen 5 CPNCGA 10 (26)
T ss_pred CcccCC
Confidence 444444
No 263
>PF07754 DUF1610: Domain of unknown function (DUF1610); InterPro: IPR011668 This domain is found in archaeal species. It is likely to bind zinc via its four well-conserved cysteine residues.
Probab=40.18 E-value=17 Score=19.24 Aligned_cols=9 Identities=33% Similarity=0.800 Sum_probs=5.9
Q ss_pred ccccccccc
Q 022481 27 RHHCRCCGR 35 (296)
Q Consensus 27 ~hhCr~Cg~ 35 (296)
++.|.+||.
T Consensus 16 ~f~CPnCG~ 24 (24)
T PF07754_consen 16 PFPCPNCGF 24 (24)
T ss_pred eEeCCCCCC
Confidence 466777774
No 264
>PF00130 C1_1: Phorbol esters/diacylglycerol binding domain (C1 domain); InterPro: IPR002219 Diacylglycerol (DAG) is an important second messenger. Phorbol esters (PE) are analogues of DAG and potent tumour promoters that cause a variety of physiological changes when administered to both cells and tissues. DAG activates a family of serine/threonine protein kinases, collectively known as protein kinase C (PKC) []. Phorbol esters can directly stimulate PKC. The N-terminal region of PKC, known as C1, has been shown [] to bind PE and DAG in a phospholipid and zinc-dependent fashion. The C1 region contains one or two copies (depending on the isozyme of PKC) of a cysteine-rich domain, which is about 50 amino-acid residues long, and which is essential for DAG/PE-binding. The DAG/PE-binding domain binds two zinc ions; the ligands of these metal ions are probably the six cysteines and two histidines that are conserved in this domain.; GO: 0035556 intracellular signal transduction; PDB: 1RFH_A 2FNF_X 3PFQ_A 1PTQ_A 1PTR_A 2VRW_B 1XA6_A 2ENN_A 1TBN_A 1TBO_A ....
Probab=40.14 E-value=24 Score=22.10 Aligned_cols=36 Identities=25% Similarity=0.444 Sum_probs=26.5
Q ss_pred ccccccccccccc-cccccccccccccceEcCCCCCC
Q 022481 9 QEATRCDVCKCSF-NTFRRRHHCRCCGRTLCHEHSSD 44 (296)
Q Consensus 9 ~~~~~C~~C~~~f-~~~~r~hhCr~Cg~~~C~~c~~~ 44 (296)
.....|..|++.. ++...-.+|+.|+.++=.+|...
T Consensus 9 ~~~~~C~~C~~~i~g~~~~g~~C~~C~~~~H~~C~~~ 45 (53)
T PF00130_consen 9 SKPTYCDVCGKFIWGLGKQGYRCSWCGLVCHKKCLSK 45 (53)
T ss_dssp SSTEB-TTSSSBECSSSSCEEEETTTT-EEETTGGCT
T ss_pred CCCCCCcccCcccCCCCCCeEEECCCCChHhhhhhhh
Confidence 3567899999976 56677899999999987777654
No 265
>COG1327 Predicted transcriptional regulator, consists of a Zn-ribbon and ATP-cone domains [Transcription]
Probab=40.13 E-value=12 Score=29.60 Aligned_cols=16 Identities=19% Similarity=0.360 Sum_probs=8.4
Q ss_pred Cceeccccchhhhccc
Q 022481 55 TNVRVCADCFNSSSRT 70 (296)
Q Consensus 55 ~~~rvC~~C~~~~~~~ 70 (296)
+.-|.|..|....+..
T Consensus 26 RRRReC~~C~~RFTTf 41 (156)
T COG1327 26 RRRRECLECGERFTTF 41 (156)
T ss_pred hhhhcccccccccchh
Confidence 3445666665554443
No 266
>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]
Probab=40.04 E-value=9.3 Score=37.14 Aligned_cols=56 Identities=20% Similarity=0.336 Sum_probs=38.4
Q ss_pred cccccccccc--ccccccccccccceEcCCCCCCce-ecCCCCC----CCceeccccchhhhc
Q 022481 13 RCDVCKCSFN--TFRRRHHCRCCGRTLCHEHSSDQM-TLPQFGI----HTNVRVCADCFNSSS 68 (296)
Q Consensus 13 ~C~~C~~~f~--~~~r~hhCr~Cg~~~C~~c~~~~~-~~~~~~~----~~~~rvC~~C~~~~~ 68 (296)
.|..|++.++ ++.|=.-|+.+|..||..|-..-. .+|.... .++..||+.=+..|.
T Consensus 342 ~CAgC~~~i~~~~~~~~R~C~y~G~y~C~~Ch~~~~svIPARVl~~WDf~~y~Vs~~a~~~L~ 404 (580)
T KOG1829|consen 342 RCAGCGHTIGPDLEQRPRLCRYLGKYFCDCCHQNDKSVIPARVLHNWDFTKYPVSNFAKQFLD 404 (580)
T ss_pred eecccCCCcccccccchhHhhhhhhhhCchhcccCcccccccceecccCcccccchhHHHHHH
Confidence 7999999998 567778899999999999966543 3343221 234556655554443
No 267
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=39.97 E-value=20 Score=34.62 Aligned_cols=18 Identities=22% Similarity=0.100 Sum_probs=7.9
Q ss_pred HHHHHHHcCCHH-HHHHHH
Q 022481 201 GLRDAIKNGDAA-AVKKLL 218 (296)
Q Consensus 201 ~Lh~A~~~g~~~-~v~~Ll 218 (296)
++..+...++.+ ..+..|
T Consensus 384 ~~~~~~~~~d~~~f~~~el 402 (505)
T TIGR00595 384 PAIQAALTGDYEAFYEQEL 402 (505)
T ss_pred HHHHHHHhCCHHHHHHHHH
Confidence 444444444443 444444
No 268
>TIGR00280 L37a ribosomal protein L37a. This model finds eukaryotic ribosomal protein L37a and its archaeal orthologs. The nomeclature is tricky because eukaryotes have proteins called both L37 and L37a.
Probab=39.90 E-value=15 Score=26.47 Aligned_cols=31 Identities=19% Similarity=0.400 Sum_probs=18.0
Q ss_pred cccccccccc-cc-ccccccccccccceEcCCC
Q 022481 11 ATRCDVCKCS-FN-TFRRRHHCRCCGRTLCHEH 41 (296)
Q Consensus 11 ~~~C~~C~~~-f~-~~~r~hhCr~Cg~~~C~~c 41 (296)
...|..|++. +. ......+|+.||..|-...
T Consensus 35 ~y~CpfCgk~~vkR~a~GIW~C~~C~~~~AGGA 67 (91)
T TIGR00280 35 KYVCPFCGKKTVKRGSTGIWTCRKCGAKFAGGA 67 (91)
T ss_pred CccCCCCCCCceEEEeeEEEEcCCCCCEEeCCc
Confidence 4567777652 21 2234567888887775443
No 269
>COG3357 Predicted transcriptional regulator containing an HTH domain fused to a Zn-ribbon [Transcription]
Probab=39.74 E-value=13 Score=26.56 Aligned_cols=15 Identities=27% Similarity=0.678 Sum_probs=11.0
Q ss_pred ccccccccccccceE
Q 022481 23 TFRRRHHCRCCGRTL 37 (296)
Q Consensus 23 ~~~r~hhCr~Cg~~~ 37 (296)
++.+--.|+.||..|
T Consensus 54 Llv~Pa~CkkCGfef 68 (97)
T COG3357 54 LLVRPARCKKCGFEF 68 (97)
T ss_pred EEecChhhcccCccc
Confidence 455667788888887
No 270
>COG3791 Uncharacterized conserved protein [Function unknown]
Probab=39.74 E-value=12 Score=28.99 Aligned_cols=12 Identities=25% Similarity=0.603 Sum_probs=8.8
Q ss_pred cccccccccccc
Q 022481 11 ATRCDVCKCSFN 22 (296)
Q Consensus 11 ~~~C~~C~~~f~ 22 (296)
.=+|..|+|.++
T Consensus 26 ~ChCs~Crk~~G 37 (133)
T COG3791 26 ACHCSDCRKASG 37 (133)
T ss_pred eeCchHhhhhhC
Confidence 346788999865
No 271
>PRK11595 DNA utilization protein GntX; Provisional
Probab=39.54 E-value=7.7 Score=33.05 Aligned_cols=23 Identities=30% Similarity=0.790 Sum_probs=14.7
Q ss_pred cccccccccccccccccccccccce
Q 022481 12 TRCDVCKCSFNTFRRRHHCRCCGRT 36 (296)
Q Consensus 12 ~~C~~C~~~f~~~~r~hhCr~Cg~~ 36 (296)
..|..|...|.++ .++|..||..
T Consensus 21 ~lC~~C~~~l~~~--~~~C~~Cg~~ 43 (227)
T PRK11595 21 GICSVCSRALRTL--KTCCPQCGLP 43 (227)
T ss_pred cccHHHHhhCCcc--cCcCccCCCc
Confidence 3566676666654 4677777753
No 272
>PF14353 CpXC: CpXC protein
Probab=39.44 E-value=13 Score=28.40 Aligned_cols=25 Identities=24% Similarity=0.606 Sum_probs=18.2
Q ss_pred ccccccccccccc---------------------cccccccccceE
Q 022481 13 RCDVCKCSFNTFR---------------------RRHHCRCCGRTL 37 (296)
Q Consensus 13 ~C~~C~~~f~~~~---------------------r~hhCr~Cg~~~ 37 (296)
.|..|+++|..-. =.+.|..||..+
T Consensus 3 tCP~C~~~~~~~v~~~I~~~~~p~l~e~il~g~l~~~~CP~Cg~~~ 48 (128)
T PF14353_consen 3 TCPHCGHEFEFEVWTSINADEDPELKEKILDGSLFSFTCPSCGHKF 48 (128)
T ss_pred CCCCCCCeeEEEEEeEEcCcCCHHHHHHHHcCCcCEEECCCCCCce
Confidence 6889999886221 168888888876
No 273
>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type
Probab=39.29 E-value=5.3 Score=21.25 Aligned_cols=12 Identities=33% Similarity=0.894 Sum_probs=8.6
Q ss_pred cccccccccccc
Q 022481 12 TRCDVCKCSFNT 23 (296)
Q Consensus 12 ~~C~~C~~~f~~ 23 (296)
..|..|+++|..
T Consensus 3 ~~C~~CgR~F~~ 14 (25)
T PF13913_consen 3 VPCPICGRKFNP 14 (25)
T ss_pred CcCCCCCCEECH
Confidence 357788888864
No 274
>PRK09678 DNA-binding transcriptional regulator; Provisional
Probab=39.25 E-value=18 Score=24.86 Aligned_cols=26 Identities=31% Similarity=0.761 Sum_probs=13.9
Q ss_pred ccccccccccc----------ccccccccc--cccceE
Q 022481 12 TRCDVCKCSFN----------TFRRRHHCR--CCGRTL 37 (296)
Q Consensus 12 ~~C~~C~~~f~----------~~~r~hhCr--~Cg~~~ 37 (296)
..|..|+..-. +.+|.+.|. .||..|
T Consensus 2 m~CP~Cg~~a~irtSr~~s~~~~~~Y~qC~N~eCg~tF 39 (72)
T PRK09678 2 FHCPLCQHAAHARTSRYITDTTKERYHQCQNVNCSATF 39 (72)
T ss_pred ccCCCCCCccEEEEChhcChhhheeeeecCCCCCCCEE
Confidence 35666666441 223556666 666655
No 275
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=39.18 E-value=2.9 Score=26.27 Aligned_cols=45 Identities=18% Similarity=0.423 Sum_probs=28.2
Q ss_pred cccccccccccccccccccccccce-EcCCCCCCceecCCCCCCCceeccccchhhhc
Q 022481 12 TRCDVCKCSFNTFRRRHHCRCCGRT-LCHEHSSDQMTLPQFGIHTNVRVCADCFNSSS 68 (296)
Q Consensus 12 ~~C~~C~~~f~~~~r~hhCr~Cg~~-~C~~c~~~~~~~~~~~~~~~~rvC~~C~~~~~ 68 (296)
..|.+|...+. ...-..||++ ||..|...... ..+.|..|...++
T Consensus 3 ~~C~iC~~~~~----~~~~~pCgH~~~C~~C~~~~~~--------~~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 3 EECPICFENPR----DVVLLPCGHLCFCEECAERLLK--------RKKKCPICRQPIE 48 (50)
T ss_dssp SB-TTTSSSBS----SEEEETTCEEEEEHHHHHHHHH--------TTSBBTTTTBB-S
T ss_pred CCCccCCccCC----ceEEeCCCChHHHHHHhHHhcc--------cCCCCCcCChhhc
Confidence 46888888654 2445579999 99999765432 3456666665543
No 276
>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....
Probab=39.07 E-value=11 Score=18.94 Aligned_cols=11 Identities=36% Similarity=1.084 Sum_probs=7.8
Q ss_pred ccccccccccc
Q 022481 13 RCDVCKCSFNT 23 (296)
Q Consensus 13 ~C~~C~~~f~~ 23 (296)
.|..|++.|..
T Consensus 2 ~C~~C~~~f~~ 12 (23)
T PF00096_consen 2 KCPICGKSFSS 12 (23)
T ss_dssp EETTTTEEESS
T ss_pred CCCCCCCccCC
Confidence 47778887763
No 277
>PRK03976 rpl37ae 50S ribosomal protein L37Ae; Reviewed
Probab=39.03 E-value=15 Score=26.35 Aligned_cols=31 Identities=23% Similarity=0.456 Sum_probs=18.3
Q ss_pred cccccccccc-cc-ccccccccccccceEcCCC
Q 022481 11 ATRCDVCKCS-FN-TFRRRHHCRCCGRTLCHEH 41 (296)
Q Consensus 11 ~~~C~~C~~~-f~-~~~r~hhCr~Cg~~~C~~c 41 (296)
...|..|++. |. ......+|+.||..|-..-
T Consensus 36 ~y~CpfCgk~~vkR~a~GIW~C~~C~~~~AGGA 68 (90)
T PRK03976 36 KHVCPVCGRPKVKRVGTGIWECRKCGAKFAGGA 68 (90)
T ss_pred CccCCCCCCCceEEEEEEEEEcCCCCCEEeCCc
Confidence 4567777542 22 2234578888888775543
No 278
>PF04981 NMD3: NMD3 family ; InterPro: IPR007064 The NMD3 protein is involved in nonsense mediated mRNA decay. This N-terminal region contains four conserved CXXC motifs that could be metal binding. NMD3 is involved in export of the 60S ribosomal subunit is mediated by the adapter protein Nmd3p in a Crm1p-dependent pathway [].
Probab=38.09 E-value=14 Score=31.76 Aligned_cols=34 Identities=15% Similarity=0.325 Sum_probs=22.7
Q ss_pred eEcCCCCCCceecCCCCCCCceeccccchhhhcc
Q 022481 36 TLCHEHSSDQMTLPQFGIHTNVRVCADCFNSSSR 69 (296)
Q Consensus 36 ~~C~~c~~~~~~~~~~~~~~~~rvC~~C~~~~~~ 69 (296)
-+|..|......+-.....-.+.+|..|-.....
T Consensus 14 ~lC~~C~~~~~~i~ei~~~i~v~~C~~Cg~~~~~ 47 (236)
T PF04981_consen 14 GLCPDCYLKRFDIIEIPDRIEVTICPKCGRYRIG 47 (236)
T ss_pred ccChHHhcccCCeeecCCccCceECCCCCCEECC
Confidence 4788887766655443323467888888877654
No 279
>PRK14873 primosome assembly protein PriA; Provisional
Probab=37.90 E-value=17 Score=36.31 Aligned_cols=33 Identities=33% Similarity=0.739 Sum_probs=15.4
Q ss_pred cccccccccccc--ccccccccccce----EcCCCCCCc
Q 022481 13 RCDVCKCSFNTF--RRRHHCRCCGRT----LCHEHSSDQ 45 (296)
Q Consensus 13 ~C~~C~~~f~~~--~r~hhCr~Cg~~----~C~~c~~~~ 45 (296)
.|..|.-+.++- .++-.|+.||.. .|..|.+..
T Consensus 394 ~C~~C~~~L~~h~~~~~l~Ch~CG~~~~p~~Cp~Cgs~~ 432 (665)
T PRK14873 394 RCRHCTGPLGLPSAGGTPRCRWCGRAAPDWRCPRCGSDR 432 (665)
T ss_pred ECCCCCCceeEecCCCeeECCCCcCCCcCccCCCCcCCc
Confidence 455555544432 224456666543 344554443
No 280
>smart00661 RPOL9 RNA polymerase subunit 9.
Probab=37.65 E-value=26 Score=21.86 Aligned_cols=10 Identities=30% Similarity=0.494 Sum_probs=6.8
Q ss_pred ceeccccchh
Q 022481 56 NVRVCADCFN 65 (296)
Q Consensus 56 ~~rvC~~C~~ 65 (296)
...||..|--
T Consensus 19 ~~~vC~~Cg~ 28 (52)
T smart00661 19 RRFVCRKCGY 28 (52)
T ss_pred CEEECCcCCC
Confidence 4677888753
No 281
>PF02591 DUF164: Putative zinc ribbon domain; InterPro: IPR003743 This entry describes proteins of unknown function.
Probab=37.63 E-value=13 Score=23.90 Aligned_cols=26 Identities=27% Similarity=0.678 Sum_probs=16.9
Q ss_pred cccccccccccc-----ccc---cccccccccce
Q 022481 11 ATRCDVCKCSFN-----TFR---RRHHCRCCGRT 36 (296)
Q Consensus 11 ~~~C~~C~~~f~-----~~~---r~hhCr~Cg~~ 36 (296)
...|..|+.... .++ .-.+|.+||+|
T Consensus 22 ~~~C~gC~~~l~~~~~~~i~~~~~i~~Cp~CgRi 55 (56)
T PF02591_consen 22 GGTCSGCHMELPPQELNEIRKGDEIVFCPNCGRI 55 (56)
T ss_pred CCccCCCCEEcCHHHHHHHHcCCCeEECcCCCcc
Confidence 357888887654 222 34778888876
No 282
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=37.54 E-value=21 Score=35.95 Aligned_cols=32 Identities=25% Similarity=0.659 Sum_probs=15.3
Q ss_pred ccccccccccc--cccccccccccce-----EcCCCCCC
Q 022481 13 RCDVCKCSFNT--FRRRHHCRCCGRT-----LCHEHSSD 44 (296)
Q Consensus 13 ~C~~C~~~f~~--~~r~hhCr~Cg~~-----~C~~c~~~ 44 (296)
.|..|...+++ ..++-.|+.||+- .|.+|.+.
T Consensus 446 ~Cp~Cd~~lt~H~~~~~L~CH~Cg~~~~~p~~Cp~Cgs~ 484 (730)
T COG1198 446 ECPNCDSPLTLHKATGQLRCHYCGYQEPIPQSCPECGSE 484 (730)
T ss_pred cCCCCCcceEEecCCCeeEeCCCCCCCCCCCCCCCCCCC
Confidence 45555554442 2344455555544 45555444
No 283
>KOG1315 consensus Predicted DHHC-type Zn-finger protein [General function prediction only]
Probab=37.53 E-value=16 Score=32.77 Aligned_cols=24 Identities=46% Similarity=1.054 Sum_probs=14.2
Q ss_pred cccccccccccccccccccccccccc
Q 022481 10 EATRCDVCKCSFNTFRRRHHCRCCGR 35 (296)
Q Consensus 10 ~~~~C~~C~~~f~~~~r~hhCr~Cg~ 35 (296)
....|..|+. -.-.|-|||+.|++
T Consensus 108 ~~R~C~kC~~--iKPdRaHHCsvC~r 131 (307)
T KOG1315|consen 108 AVRYCDKCKC--IKPDRAHHCSVCNR 131 (307)
T ss_pred Cceeeccccc--ccCCccccchhhhh
Confidence 4455665554 12347888888754
No 284
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=37.24 E-value=18 Score=20.52 Aligned_cols=11 Identities=27% Similarity=0.751 Sum_probs=8.8
Q ss_pred ccccccccceE
Q 022481 27 RHHCRCCGRTL 37 (296)
Q Consensus 27 ~hhCr~Cg~~~ 37 (296)
++.|+.||.++
T Consensus 1 ~~~C~~CGy~y 11 (33)
T cd00350 1 KYVCPVCGYIY 11 (33)
T ss_pred CEECCCCCCEE
Confidence 46799999886
No 285
>cd02336 ZZ_RSC8 Zinc finger, ZZ type. Zinc finger present in RSC8 and related proteins. RSC8 is a component of the RSC complex, which is closely related to the SWI/SNF complex and is involved in remodeling chromatin structure. The ZZ motif coordinates a zinc ion and most likely participates in ligand binding or molecular scaffolding.
Probab=36.63 E-value=13 Score=23.00 Aligned_cols=11 Identities=18% Similarity=0.939 Sum_probs=7.0
Q ss_pred ceeccccchhh
Q 022481 56 NVRVCADCFNS 66 (296)
Q Consensus 56 ~~rvC~~C~~~ 66 (296)
..-+|..||..
T Consensus 22 ~~dLC~~CF~~ 32 (45)
T cd02336 22 KYDLCPSCYQE 32 (45)
T ss_pred ccccChHHHhC
Confidence 35567777764
No 286
>smart00109 C1 Protein kinase C conserved region 1 (C1) domains (Cysteine-rich domains). Some bind phorbol esters and diacylglycerol. Some bind RasGTP. Zinc-binding domains.
Probab=36.57 E-value=17 Score=22.07 Aligned_cols=33 Identities=21% Similarity=0.396 Sum_probs=21.8
Q ss_pred cccccccccccccccccccccccccceEcCCCC
Q 022481 10 EATRCDVCKCSFNTFRRRHHCRCCGRTLCHEHS 42 (296)
Q Consensus 10 ~~~~C~~C~~~f~~~~r~hhCr~Cg~~~C~~c~ 42 (296)
....|..|++.+..+..-..|+.|+.++=.+|.
T Consensus 10 ~~~~C~~C~~~i~~~~~~~~C~~C~~~~H~~C~ 42 (49)
T smart00109 10 KPTKCCVCRKSIWGSFQGLRCSWCKVKCHKKCA 42 (49)
T ss_pred CCCCccccccccCcCCCCcCCCCCCchHHHHHH
Confidence 356799999887654345678888766544443
No 287
>PF09862 DUF2089: Protein of unknown function (DUF2089); InterPro: IPR018658 This family consists of various hypothetical prokaryotic proteins.
Probab=36.36 E-value=18 Score=27.29 Aligned_cols=24 Identities=29% Similarity=0.732 Sum_probs=13.8
Q ss_pred cccccccccccccccccccccceEcC
Q 022481 14 CDVCKCSFNTFRRRHHCRCCGRTLCH 39 (296)
Q Consensus 14 C~~C~~~f~~~~r~hhCr~Cg~~~C~ 39 (296)
|..|+.++.. .+.+|..||-.+-+
T Consensus 1 CPvCg~~l~v--t~l~C~~C~t~i~G 24 (113)
T PF09862_consen 1 CPVCGGELVV--TRLKCPSCGTEIEG 24 (113)
T ss_pred CCCCCCceEE--EEEEcCCCCCEEEe
Confidence 5666665433 35666666666543
No 288
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=36.12 E-value=17 Score=29.21 Aligned_cols=26 Identities=23% Similarity=0.382 Sum_probs=19.8
Q ss_pred ccccccccccccc---ccccccccccceE
Q 022481 12 TRCDVCKCSFNTF---RRRHHCRCCGRTL 37 (296)
Q Consensus 12 ~~C~~C~~~f~~~---~r~hhCr~Cg~~~ 37 (296)
-.|..|+..|++. .--.+|..||...
T Consensus 110 Y~Cp~c~~r~tf~eA~~~~F~Cp~Cg~~L 138 (158)
T TIGR00373 110 FICPNMCVRFTFNEAMELNFTCPRCGAML 138 (158)
T ss_pred EECCCCCcEeeHHHHHHcCCcCCCCCCEe
Confidence 4699999998853 4578888888763
No 289
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=36.01 E-value=4.4 Score=28.10 Aligned_cols=58 Identities=16% Similarity=0.343 Sum_probs=21.2
Q ss_pred CCCcccccccccccccccccc---ccccccccceEcCCCCCCceecCCCCCCCceeccccchhhhccc
Q 022481 6 PAFQEATRCDVCKCSFNTFRR---RHHCRCCGRTLCHEHSSDQMTLPQFGIHTNVRVCADCFNSSSRT 70 (296)
Q Consensus 6 ~~~~~~~~C~~C~~~f~~~~r---~hhCr~Cg~~~C~~c~~~~~~~~~~~~~~~~rvC~~C~~~~~~~ 70 (296)
..+.....|.+|+...++..- =.-|..|+.-+|..|..+.. ..-..+|..|...+.+.
T Consensus 4 ~k~~~~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYEr-------keg~q~CpqCkt~ykr~ 64 (80)
T PF14569_consen 4 LKNLNGQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYER-------KEGNQVCPQCKTRYKRH 64 (80)
T ss_dssp -S--SS-B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHH-------HTS-SB-TTT--B----
T ss_pred hhhcCCcccccccCccccCCCCCEEEEEcccCCccchhHHHHHh-------hcCcccccccCCCcccc
Confidence 344567899999998775321 24588888888888865532 23467888888655543
No 290
>PHA02942 putative transposase; Provisional
Probab=35.47 E-value=25 Score=32.57 Aligned_cols=29 Identities=24% Similarity=0.582 Sum_probs=19.8
Q ss_pred ccccccccccccc-cccccccccccccceE
Q 022481 9 QEATRCDVCKCSF-NTFRRRHHCRCCGRTL 37 (296)
Q Consensus 9 ~~~~~C~~C~~~f-~~~~r~hhCr~Cg~~~ 37 (296)
-....|..|+..= .+-.|.+.|..||...
T Consensus 323 yTSq~Cs~CG~~~~~l~~r~f~C~~CG~~~ 352 (383)
T PHA02942 323 YSSVSCPKCGHKMVEIAHRYFHCPSCGYEN 352 (383)
T ss_pred CCCccCCCCCCccCcCCCCEEECCCCCCEe
Confidence 3567888888632 2335678888888775
No 291
>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only]
Probab=35.18 E-value=13 Score=35.14 Aligned_cols=60 Identities=17% Similarity=0.294 Sum_probs=41.0
Q ss_pred cccccccc-cccccccccccccccceEcCCCCCCceecCCCCCCCceeccccchhhhcccC
Q 022481 12 TRCDVCKC-SFNTFRRRHHCRCCGRTLCHEHSSDQMTLPQFGIHTNVRVCADCFNSSSRTG 71 (296)
Q Consensus 12 ~~C~~C~~-~f~~~~r~hhCr~Cg~~~C~~c~~~~~~~~~~~~~~~~rvC~~C~~~~~~~~ 71 (296)
..|.+|+. .++.++|-..|+.|+.-|=..|..-.+..-.++-...+..|..|-.......
T Consensus 169 ~qc~vC~~g~~~~~NrmlqC~~C~~~fHq~Chqp~i~~~l~~D~~~~w~C~~C~~~~~~~~ 229 (464)
T KOG4323|consen 169 LQCSVCYCGGPGAGNRMLQCDKCRQWYHQACHQPLIKDELAGDPFYEWFCDVCNRGPKKVP 229 (464)
T ss_pred ceeeeeecCCcCccceeeeecccccHHHHHhccCCCCHhhccCccceEeehhhccchhhcc
Confidence 35999996 6889999999999999875444433322223333456788999987655443
No 292
>KOG3836 consensus HLH transcription factor EBF/Olf-1 and related DNA binding proteins [Transcription]
Probab=34.98 E-value=12 Score=36.22 Aligned_cols=53 Identities=25% Similarity=0.335 Sum_probs=44.1
Q ss_pred HHHcCCHHHHHHHHHCCCCCCccCCCCCCHhhHhhhcCcHHHHHHHHHcCCCC
Q 022481 238 AALFNRTDIAFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKNNV 290 (296)
Q Consensus 238 A~~~g~~~iv~~LL~~ga~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gadi 290 (296)
|+..+....+-.|++.|+.++..|..|.||+|++...|..++.+.++....++
T Consensus 403 ~~~~~~ss~v~~lik~~~~~~~~d~f~~~p~~~~~~sgdp~~~~~~~~~~~~~ 455 (605)
T KOG3836|consen 403 AALNNSSSLVFTLIKKGAHPNDDDKFGFTPLHIPQISGDPRIIQLLLNCKVAI 455 (605)
T ss_pred hhhcCCccceeeeecccCccchhcccccccccccCCCCCHHHhhhhhhhhhhh
Confidence 45556666777788899999999999999999999999999999888754443
No 293
>PTZ00255 60S ribosomal protein L37a; Provisional
Probab=34.93 E-value=21 Score=25.65 Aligned_cols=31 Identities=16% Similarity=0.355 Sum_probs=18.2
Q ss_pred cccccccccc-cc-ccccccccccccceEcCCC
Q 022481 11 ATRCDVCKCS-FN-TFRRRHHCRCCGRTLCHEH 41 (296)
Q Consensus 11 ~~~C~~C~~~-f~-~~~r~hhCr~Cg~~~C~~c 41 (296)
...|..|++. +. ......+|+.||..|-..-
T Consensus 36 ~y~CpfCgk~~vkR~a~GIW~C~~C~~~~AGGA 68 (90)
T PTZ00255 36 KYFCPFCGKHAVKRQAVGIWRCKGCKKTVAGGA 68 (90)
T ss_pred CccCCCCCCCceeeeeeEEEEcCCCCCEEeCCc
Confidence 4567778642 21 2234577888888775543
No 294
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=34.73 E-value=11 Score=33.34 Aligned_cols=61 Identities=25% Similarity=0.511 Sum_probs=32.1
Q ss_pred cccccccccc--cccc-------ccccccccccc------eEcCCCCCCc-eecCCC----CCCCceeccccchhhhccc
Q 022481 11 ATRCDVCKCS--FNTF-------RRRHHCRCCGR------TLCHEHSSDQ-MTLPQF----GIHTNVRVCADCFNSSSRT 70 (296)
Q Consensus 11 ~~~C~~C~~~--f~~~-------~r~hhCr~Cg~------~~C~~c~~~~-~~~~~~----~~~~~~rvC~~C~~~~~~~ 70 (296)
...|.+|+.. .+.+ .|..||..||. +-|..|.+.. ..+..+ .....+-||+.|...++..
T Consensus 172 ~g~CPvCGs~P~~s~l~~~~~~G~R~L~Cs~C~t~W~~~R~~Cp~Cg~~~~~~l~~~~~e~~~~~rve~C~~C~~YlK~v 251 (290)
T PF04216_consen 172 RGYCPVCGSPPVLSVLRGGEREGKRYLHCSLCGTEWRFVRIKCPYCGNTDHEKLEYFTVEGEPAYRVEVCESCGSYLKTV 251 (290)
T ss_dssp -SS-TTT---EEEEEEE------EEEEEETTT--EEE--TTS-TTT---SS-EEE--------SEEEEEETTTTEEEEEE
T ss_pred CCcCCCCCCcCceEEEecCCCCccEEEEcCCCCCeeeecCCCCcCCCCCCCcceeeEecCCCCcEEEEECCcccchHHHH
Confidence 4799999984 2222 37889999995 4788887653 222222 1124567899999988766
Q ss_pred C
Q 022481 71 G 71 (296)
Q Consensus 71 ~ 71 (296)
.
T Consensus 252 d 252 (290)
T PF04216_consen 252 D 252 (290)
T ss_dssp E
T ss_pred h
Confidence 5
No 295
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=34.60 E-value=1.9e+02 Score=29.58 Aligned_cols=9 Identities=11% Similarity=0.305 Sum_probs=3.4
Q ss_pred cHHHHHHHc
Q 022481 233 SLLHLAALF 241 (296)
Q Consensus 233 TpLh~A~~~ 241 (296)
|+-.+++..
T Consensus 700 taQnLsIfl 708 (1102)
T KOG1924|consen 700 TAQNLSIFL 708 (1102)
T ss_pred HHHHHHHHH
Confidence 333344333
No 296
>KOG1818 consensus Membrane trafficking and cell signaling protein HRS, contains VHS and FYVE domains [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=34.58 E-value=3.9 Score=39.91 Aligned_cols=51 Identities=16% Similarity=0.183 Sum_probs=37.5
Q ss_pred ccccccccccccccccccccccc-ceEcCCCCCCceecCCCCCCCceeccccc
Q 022481 12 TRCDVCKCSFNTFRRRHHCRCCG-RTLCHEHSSDQMTLPQFGIHTNVRVCADC 63 (296)
Q Consensus 12 ~~C~~C~~~f~~~~r~hhCr~Cg-~~~C~~c~~~~~~~~~~~~~~~~rvC~~C 63 (296)
.+|..|-+.|++..+.|+|++|| .++|.-|++.++.+-... ....|+|..=
T Consensus 55 ~h~np~~~~~~~~~~d~cvkn~G~gv~~ei~tre~m~~~~~~-l~~~~~~e~v 106 (634)
T KOG1818|consen 55 DHENPNVQLFTLKLTDHCVKNCGHGVHCEIATREFMDLLKSL-LESQRIHEEV 106 (634)
T ss_pred hccCCCcccchhhhHHHHHhcCCcchhHHHHHHHHHHHHHhh-hccccccchH
Confidence 47888999999999999999999 889988888776543333 2334444443
No 297
>COG1545 Predicted nucleic-acid-binding protein containing a Zn-ribbon [General function prediction only]
Probab=34.51 E-value=20 Score=28.11 Aligned_cols=10 Identities=40% Similarity=1.149 Sum_probs=7.3
Q ss_pred cccccccceE
Q 022481 28 HHCRCCGRTL 37 (296)
Q Consensus 28 hhCr~Cg~~~ 37 (296)
..|..||++|
T Consensus 30 ~kC~~CG~v~ 39 (140)
T COG1545 30 TKCKKCGRVY 39 (140)
T ss_pred EEcCCCCeEE
Confidence 4688888775
No 298
>PF01780 Ribosomal_L37ae: Ribosomal L37ae protein family; InterPro: IPR002674 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This ribosomal protein is found in archaebacteria and eukaryotes []. Ribosomal protein L37 has a single zinc finger-like motif of the C2-C2 type [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 4A1E_Y 4A17_Y 4A1C_Y 4A1A_Y 3O58_g 3IZS_m 3O5H_g 1S1I_9 3IZR_m 1YSH_D ....
Probab=34.49 E-value=19 Score=25.86 Aligned_cols=26 Identities=19% Similarity=0.597 Sum_probs=12.0
Q ss_pred ccccccccc-c-ccccccccccccceEc
Q 022481 13 RCDVCKCSF-N-TFRRRHHCRCCGRTLC 38 (296)
Q Consensus 13 ~C~~C~~~f-~-~~~r~hhCr~Cg~~~C 38 (296)
.|..|++.= . .-....+|+.||..|-
T Consensus 37 ~Cp~Cgk~~vkR~a~GIW~C~~C~~~~A 64 (90)
T PF01780_consen 37 TCPFCGKTSVKRVATGIWKCKKCGKKFA 64 (90)
T ss_dssp EESSSSSSEEEEEETTEEEETTTTEEEE
T ss_pred cCCCCCCceeEEeeeEEeecCCCCCEEe
Confidence 455555521 1 1112355666665553
No 299
>PF00643 zf-B_box: B-box zinc finger; InterPro: IPR000315 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents B-box-type zinc finger domains, which are around 40 residues in length. B-box zinc fingers can be divided into two groups, where types 1 and 2 B-box domains differ in their consensus sequence and in the spacing of the 7-8 zinc-binding residues. Several proteins contain both types 1 and 2 B-boxes, suggesting some level of cooperativity between these two domains. B-box domains are found in over 1500 proteins from a variety of organisms. They are found in TRIM (tripartite motif) proteins that consist of an N-terminal RING finger (originally called an A-box), followed by 1-2 B-box domains and a coiled-coil domain (also called RBCC for Ring, B-box, Coiled-Coil). TRIM proteins contain a type 2 B-box domain, and may also contain a type 1 B-box. In proteins that do not contain RING or coiled-coil domains, the B-box domain is primarily type 2. Many type 2 B-box proteins are involved in ubiquitinylation. Proteins containing a B-box zinc finger domain include transcription factors, ribonucleoproteins and proto-oncoproteins; for example, MID1, MID2, TRIM9, TNL, TRIM36, TRIM63, TRIFIC, NCL1 and CONSTANS-like proteins []. The microtubule-associated E3 ligase MID1 (6.3.2 from EC) contains a type 1 B-box zinc finger domain. MID1 specifically binds Alpha-4, which in turn recruits the catalytic subunit of phosphatase 2A (PP2Ac). This complex is required for targeting of PP2Ac for proteasome-mediated degradation. The MID1 B-box coordinates two zinc ions and adopts a beta/beta/alpha cross-brace structure similar to that of ZZ, PHD, RING and FYVE zinc fingers [, ]. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 3DDT_B 2D8U_A 3Q1D_A 2EGM_A 2YVR_B 2DJA_A 2DQ5_A 2JUN_A 2YRG_A 2DID_A ....
Probab=34.26 E-value=10 Score=22.57 Aligned_cols=29 Identities=21% Similarity=0.438 Sum_probs=18.2
Q ss_pred ccccccccccccccccccccccccceEcCCCCC
Q 022481 11 ATRCDVCKCSFNTFRRRHHCRCCGRTLCHEHSS 43 (296)
Q Consensus 11 ~~~C~~C~~~f~~~~r~hhCr~Cg~~~C~~c~~ 43 (296)
...|..+.... -+.-|..|+..+|..|..
T Consensus 3 ~~~C~~H~~~~----~~~~C~~C~~~~C~~C~~ 31 (42)
T PF00643_consen 3 EPKCPEHPEEP----LSLFCEDCNEPLCSECTV 31 (42)
T ss_dssp SSB-SSTTTSB----EEEEETTTTEEEEHHHHH
T ss_pred CccCccCCccc----eEEEecCCCCccCccCCC
Confidence 34566666531 245688888888888854
No 300
>PF02148 zf-UBP: Zn-finger in ubiquitin-hydrolases and other protein; InterPro: IPR001607 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents UBP-type zinc finger domains, which display some similarity with the Zn-binding domain of the insulinase family. The UBP-type zinc finger domain is found only in a small subfamily of ubiquitin C-terminal hydrolases (deubiquitinases or UBP) [, ], All members of this subfamily are isopeptidase-T, which are known to cleave isopeptide bonds between ubiquitin moieties. Some of the proteins containing an UBP zinc finger include: Homo sapiens (Human) deubiquitinating enzyme 13 (UBPD) Human deubiquitinating enzyme 5 (UBP5) Dictyostelium discoideum (Slime mold) deubiquitinating enzyme A (UBPA) Saccharomyces cerevisiae (Baker's yeast) deubiquitinating enzyme 8 (UBP8) Yeast deubiquitinating enzyme 14 (UBP14) More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3GV4_A 3PHD_B 3C5K_A 2UZG_A 3IHP_B 2G43_B 2G45_D 2I50_A 3MHH_A 3MHS_A ....
Probab=33.89 E-value=25 Score=23.25 Aligned_cols=24 Identities=29% Similarity=0.704 Sum_probs=15.8
Q ss_pred cccccccccccccccccccccceEcCC
Q 022481 14 CDVCKCSFNTFRRRHHCRCCGRTLCHE 40 (296)
Q Consensus 14 C~~C~~~f~~~~r~hhCr~Cg~~~C~~ 40 (296)
|..|+.. ..+-.-|-.||.++|.+
T Consensus 1 C~~C~~~---~~~lw~CL~Cg~~~C~~ 24 (63)
T PF02148_consen 1 CSVCGST---NSNLWLCLTCGYVGCGR 24 (63)
T ss_dssp -SSSHTC---SSSEEEETTTS-EEETT
T ss_pred CCCCCCc---CCceEEeCCCCcccccC
Confidence 4556532 34567799999999986
No 301
>PRK05978 hypothetical protein; Provisional
Probab=33.86 E-value=20 Score=28.42 Aligned_cols=25 Identities=32% Similarity=0.881 Sum_probs=12.8
Q ss_pred ccccccc--ccc-ccccccccccccceE
Q 022481 13 RCDVCKC--SFN-TFRRRHHCRCCGRTL 37 (296)
Q Consensus 13 ~C~~C~~--~f~-~~~r~hhCr~Cg~~~ 37 (296)
.|..|++ -|. +++=+.+|..||.-|
T Consensus 35 rCP~CG~G~LF~g~Lkv~~~C~~CG~~~ 62 (148)
T PRK05978 35 RCPACGEGKLFRAFLKPVDHCAACGEDF 62 (148)
T ss_pred cCCCCCCCcccccccccCCCccccCCcc
Confidence 4666655 243 334455566655544
No 302
>PLN03148 Blue copper-like protein; Provisional
Probab=33.76 E-value=58 Score=26.40 Aligned_cols=20 Identities=30% Similarity=0.459 Sum_probs=15.9
Q ss_pred ccccccCCceeeecCCCCCC
Q 022481 114 VLECKCGMPLCICEAPAPAA 133 (296)
Q Consensus 114 ~~~~~~~~p~c~~~~P~p~~ 133 (296)
..-|.-||-|-|--.|.|+|
T Consensus 104 ~ghC~~GmKl~I~V~~~~~p 123 (167)
T PLN03148 104 NGQCFNGMKVTILVHPLPPP 123 (167)
T ss_pred CCccccCCEEEEEEcCCCCC
Confidence 46999999999988876533
No 303
>COG1779 C4-type Zn-finger protein [General function prediction only]
Probab=33.75 E-value=31 Score=28.67 Aligned_cols=10 Identities=30% Similarity=0.185 Sum_probs=5.0
Q ss_pred cCCCCCcHHH
Q 022481 227 CDKQGMSLLH 236 (296)
Q Consensus 227 ~d~~g~TpLh 236 (296)
.|..|.+.++
T Consensus 160 eDp~G~S~I~ 169 (201)
T COG1779 160 EDPLGNSAII 169 (201)
T ss_pred ECCCCCceee
Confidence 3555555544
No 304
>PRK12496 hypothetical protein; Provisional
Probab=33.73 E-value=19 Score=29.07 Aligned_cols=13 Identities=23% Similarity=0.764 Sum_probs=10.3
Q ss_pred ccccccccccceE
Q 022481 25 RRRHHCRCCGRTL 37 (296)
Q Consensus 25 ~r~hhCr~Cg~~~ 37 (296)
++++.|..||+.|
T Consensus 125 ~w~~~C~gC~~~~ 137 (164)
T PRK12496 125 KWRKVCKGCKKKY 137 (164)
T ss_pred eeeEECCCCCccc
Confidence 4578899999887
No 305
>PF13453 zf-TFIIB: Transcription factor zinc-finger
Probab=33.36 E-value=22 Score=21.27 Aligned_cols=11 Identities=27% Similarity=0.791 Sum_probs=5.8
Q ss_pred Cceeccccchh
Q 022481 55 TNVRVCADCFN 65 (296)
Q Consensus 55 ~~~rvC~~C~~ 65 (296)
-++-+|..|..
T Consensus 17 ~~id~C~~C~G 27 (41)
T PF13453_consen 17 VEIDVCPSCGG 27 (41)
T ss_pred EEEEECCCCCe
Confidence 34555655554
No 306
>PF10013 DUF2256: Uncharacterized protein conserved in bacteria (DUF2256); InterPro: IPR017136 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=33.15 E-value=18 Score=21.91 Aligned_cols=16 Identities=25% Similarity=0.513 Sum_probs=12.7
Q ss_pred cccccccccccccccc
Q 022481 10 EATRCDVCKCSFNTFR 25 (296)
Q Consensus 10 ~~~~C~~C~~~f~~~~ 25 (296)
..+.|..|+.+|+.-+
T Consensus 7 p~K~C~~C~rpf~WRK 22 (42)
T PF10013_consen 7 PSKICPVCGRPFTWRK 22 (42)
T ss_pred CCCcCcccCCcchHHH
Confidence 4578999999998543
No 307
>cd00729 rubredoxin_SM Rubredoxin, Small Modular nonheme iron binding domain containing a [Fe(SCys)4] center, present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=32.83 E-value=23 Score=20.33 Aligned_cols=12 Identities=25% Similarity=0.462 Sum_probs=9.3
Q ss_pred ccccccccceEc
Q 022481 27 RHHCRCCGRTLC 38 (296)
Q Consensus 27 ~hhCr~Cg~~~C 38 (296)
.+-|+.||.|+=
T Consensus 2 ~~~C~~CG~i~~ 13 (34)
T cd00729 2 VWVCPVCGYIHE 13 (34)
T ss_pred eEECCCCCCEeE
Confidence 467999999863
No 308
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=32.63 E-value=17 Score=29.85 Aligned_cols=26 Identities=27% Similarity=0.552 Sum_probs=18.4
Q ss_pred ccccccccccccc---ccccccccccceE
Q 022481 12 TRCDVCKCSFNTF---RRRHHCRCCGRTL 37 (296)
Q Consensus 12 ~~C~~C~~~f~~~---~r~hhCr~Cg~~~ 37 (296)
-.|..|+..|++. .--.+|..||...
T Consensus 118 Y~Cp~C~~rytf~eA~~~~F~Cp~Cg~~L 146 (178)
T PRK06266 118 FFCPNCHIRFTFDEAMEYGFRCPQCGEML 146 (178)
T ss_pred EECCCCCcEEeHHHHhhcCCcCCCCCCCC
Confidence 4688888888853 4567777777653
No 309
>PF09332 Mcm10: Mcm10 replication factor; InterPro: IPR015411 Mcm10 is a eukaryotic DNA replication factor that regulates the stability and chromatin association of DNA polymerase alpha []. ; PDB: 2KWQ_A.
Probab=32.57 E-value=18 Score=32.91 Aligned_cols=11 Identities=36% Similarity=0.945 Sum_probs=4.1
Q ss_pred cccccccccce
Q 022481 26 RRHHCRCCGRT 36 (296)
Q Consensus 26 r~hhCr~Cg~~ 36 (296)
|=..|..||.-
T Consensus 284 RFFkC~~C~~R 294 (344)
T PF09332_consen 284 RFFKCKDCGNR 294 (344)
T ss_dssp EEEE-T-TS-E
T ss_pred eeEECCCCCCe
Confidence 44456666553
No 310
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=32.04 E-value=17 Score=32.31 Aligned_cols=31 Identities=23% Similarity=0.566 Sum_probs=22.3
Q ss_pred ccccccccccccccccccccccccceEcCCCCCC
Q 022481 11 ATRCDVCKCSFNTFRRRHHCRCCGRTLCHEHSSD 44 (296)
Q Consensus 11 ~~~C~~C~~~f~~~~r~hhCr~Cg~~~C~~c~~~ 44 (296)
+..|..|.++.-..-|-.- |-.+||-+|...
T Consensus 90 VHfCd~Cd~PI~IYGRmIP---CkHvFCl~CAr~ 120 (389)
T KOG2932|consen 90 VHFCDRCDFPIAIYGRMIP---CKHVFCLECARS 120 (389)
T ss_pred eEeecccCCcceeeecccc---cchhhhhhhhhc
Confidence 5678888888776666554 456899888754
No 311
>cd00730 rubredoxin Rubredoxin; nonheme iron binding domains containing a [Fe(SCys)4] center. Rubredoxins are small nonheme iron proteins. The iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc. They are believed to be involved in electron transfer.
Probab=31.95 E-value=24 Score=22.38 Aligned_cols=13 Identities=31% Similarity=0.703 Sum_probs=10.4
Q ss_pred ccccccccceEcC
Q 022481 27 RHHCRCCGRTLCH 39 (296)
Q Consensus 27 ~hhCr~Cg~~~C~ 39 (296)
++.|+.||.|+=.
T Consensus 1 ~y~C~~CgyiYd~ 13 (50)
T cd00730 1 KYECRICGYIYDP 13 (50)
T ss_pred CcCCCCCCeEECC
Confidence 5789999999854
No 312
>PRK14890 putative Zn-ribbon RNA-binding protein; Provisional
Probab=31.90 E-value=32 Score=22.62 Aligned_cols=27 Identities=22% Similarity=0.626 Sum_probs=20.6
Q ss_pred cccccccccccccccc--cccccccccce
Q 022481 10 EATRCDVCKCSFNTFR--RRHHCRCCGRT 36 (296)
Q Consensus 10 ~~~~C~~C~~~f~~~~--r~hhCr~Cg~~ 36 (296)
....|..|+....... -++.|.+||.+
T Consensus 6 ~~~~CtSCg~~i~~~~~~~~F~CPnCG~~ 34 (59)
T PRK14890 6 EPPKCTSCGIEIAPREKAVKFLCPNCGEV 34 (59)
T ss_pred cCccccCCCCcccCCCccCEeeCCCCCCe
Confidence 4567999998776443 47899999987
No 313
>COG4530 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.79 E-value=22 Score=26.39 Aligned_cols=27 Identities=11% Similarity=0.052 Sum_probs=18.7
Q ss_pred ccccccccccccccccc-cccccccceE
Q 022481 11 ATRCDVCKCSFNTFRRR-HHCRCCGRTL 37 (296)
Q Consensus 11 ~~~C~~C~~~f~~~~r~-hhCr~Cg~~~ 37 (296)
...|..|+++|--++|+ .-|.+||..|
T Consensus 9 KridPetg~KFYDLNrdPiVsPytG~s~ 36 (129)
T COG4530 9 KRIDPETGKKFYDLNRDPIVSPYTGKSY 36 (129)
T ss_pred cccCccccchhhccCCCccccCcccccc
Confidence 35789999999977664 4555555544
No 314
>PHA01732 proline-rich protein
Probab=31.71 E-value=81 Score=22.40 Aligned_cols=9 Identities=56% Similarity=1.206 Sum_probs=5.4
Q ss_pred eeecCCCCC
Q 022481 124 CICEAPAPA 132 (296)
Q Consensus 124 c~~~~P~p~ 132 (296)
||..+|.+.
T Consensus 2 C~fgAP~~p 10 (94)
T PHA01732 2 CIFRAPKPP 10 (94)
T ss_pred cccCCCCCC
Confidence 566666653
No 315
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=31.68 E-value=10 Score=22.95 Aligned_cols=15 Identities=20% Similarity=0.563 Sum_probs=12.0
Q ss_pred cccceEcCCCCCCce
Q 022481 32 CCGRTLCHEHSSDQM 46 (296)
Q Consensus 32 ~Cg~~~C~~c~~~~~ 46 (296)
.||.+||..|.....
T Consensus 15 ~CGH~FC~~Cl~~~~ 29 (42)
T PF15227_consen 15 PCGHSFCRSCLERLW 29 (42)
T ss_dssp SSSSEEEHHHHHHHH
T ss_pred CCcCHHHHHHHHHHH
Confidence 699999999976543
No 316
>cd02335 ZZ_ADA2 Zinc finger, ZZ type. Zinc finger present in ADA2, a putative transcriptional adaptor, and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.
Probab=31.61 E-value=18 Score=22.60 Aligned_cols=30 Identities=33% Similarity=0.639 Sum_probs=18.7
Q ss_pred ccccccccccccccccccccc-cceEcCCCCC
Q 022481 13 RCDVCKCSFNTFRRRHHCRCC-GRTLCHEHSS 43 (296)
Q Consensus 13 ~C~~C~~~f~~~~r~hhCr~C-g~~~C~~c~~ 43 (296)
.|..|.+...- ..|++|-.| ..-+|..|-.
T Consensus 2 ~Cd~C~~~~~~-g~r~~C~~C~d~dLC~~Cf~ 32 (49)
T cd02335 2 HCDYCSKDITG-TIRIKCAECPDFDLCLECFS 32 (49)
T ss_pred CCCCcCCCCCC-CcEEECCCCCCcchhHHhhh
Confidence 58888886542 257888877 4445555543
No 317
>CHL00112 rpl28 ribosomal protein L28; Provisional
Probab=31.53 E-value=32 Score=23.00 Aligned_cols=59 Identities=5% Similarity=0.072 Sum_probs=29.1
Q ss_pred ccccccccccccccccccc-cccccceEcCCCCCCceecCCCCCCCceeccccchhhhcc
Q 022481 11 ATRCDVCKCSFNTFRRRHH-CRCCGRTLCHEHSSDQMTLPQFGIHTNVRVCADCFNSSSR 69 (296)
Q Consensus 11 ~~~C~~C~~~f~~~~r~hh-Cr~Cg~~~C~~c~~~~~~~~~~~~~~~~rvC~~C~~~~~~ 69 (296)
+..|.+|++.=.+-+...| =+.--+.|=.+=-..++.++..+....+|||..|...+..
T Consensus 2 sr~C~i~GK~~~~Gn~vSHs~~kTkR~f~pNLq~vr~~~~~~~~~~kl~Vstr~Lrt~~k 61 (63)
T CHL00112 2 SKKCQLTGKKANNGYTVSHSHKRTKKLQKVNLQTKKIWSNTQNRWVKLKISTKAIKTLKK 61 (63)
T ss_pred CCeeccCCCcCccCceeEccCcccCceecccccEEEEEECCCCeEEEEEEEHHHhhhccc
Confidence 3579999995333222222 1122222211111122233333333567999999988764
No 318
>PF12647 RNHCP: RNHCP domain; InterPro: IPR024439 This domain is found in uncharacterised bacterial proteins. It is typically between 94 and 143 amino acids in length and has a conserved RNHCP sequence motif.
Probab=31.41 E-value=28 Score=25.14 Aligned_cols=26 Identities=27% Similarity=0.604 Sum_probs=18.6
Q ss_pred cccccccccccccc----cccccccccccc
Q 022481 10 EATRCDVCKCSFNT----FRRRHHCRCCGR 35 (296)
Q Consensus 10 ~~~~C~~C~~~f~~----~~r~hhCr~Cg~ 35 (296)
+.-.|..|+..... ...|.||..|=.
T Consensus 3 ~~F~C~~CG~~V~p~~~g~~~RNHCP~CL~ 32 (92)
T PF12647_consen 3 ESFTCVHCGLTVSPLAAGSAHRNHCPSCLS 32 (92)
T ss_pred cccCccccCCCcccCCCCCCccCcCccccc
Confidence 56678999987754 236889888743
No 319
>PRK00359 rpmB 50S ribosomal protein L28; Reviewed
Probab=31.39 E-value=21 Score=24.86 Aligned_cols=60 Identities=12% Similarity=0.118 Sum_probs=34.4
Q ss_pred ccccccccccccccccc-cccccccceEcCCCCCCceecCCCCCCCceeccccchhhhccc
Q 022481 11 ATRCDVCKCSFNTFRRR-HHCRCCGRTLCHEHSSDQMTLPQFGIHTNVRVCADCFNSSSRT 70 (296)
Q Consensus 11 ~~~C~~C~~~f~~~~r~-hhCr~Cg~~~C~~c~~~~~~~~~~~~~~~~rvC~~C~~~~~~~ 70 (296)
+..|.+|++.=.+-+.. |.=+..-+.|=.+--..++..+..|....++||..|...+...
T Consensus 2 sr~C~i~GK~~~~Gn~vShs~~kTkR~~~pNlq~~~~~~~~~g~~v~~~vst~~Lrti~k~ 62 (76)
T PRK00359 2 SRVCEITGKGPMVGNNVSHSNNKTKRRFLPNLQKVRFWVEEEGRFVRLRVSARALRTIDKK 62 (76)
T ss_pred CCccccCCCCCccCCeeeecCCccCceecccceEEEEEEccCCEEEEEEEEchheeeehhh
Confidence 35799999953322211 1113333444333333344445666667899999999977654
No 320
>cd02345 ZZ_dah Zinc finger, ZZ type. Zinc finger present in Drosophila dah and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Dah (discontinuous actin hexagon) is a membrane associated protein essential for cortical furrow formation in Drosophila.
Probab=31.37 E-value=16 Score=22.94 Aligned_cols=20 Identities=25% Similarity=0.821 Sum_probs=13.0
Q ss_pred ccccccc-ccccccccccccccc
Q 022481 13 RCDVCKC-SFNTFRRRHHCRCCG 34 (296)
Q Consensus 13 ~C~~C~~-~f~~~~r~hhCr~Cg 34 (296)
.|..|.+ .|. -.|++|-.|.
T Consensus 2 ~C~~C~~~~i~--g~R~~C~~C~ 22 (49)
T cd02345 2 SCSACRKQDIS--GIRFPCQVCR 22 (49)
T ss_pred cCCCCCCCCce--EeeEECCCCC
Confidence 4777887 565 3466777663
No 321
>PF12172 DUF35_N: Rubredoxin-like zinc ribbon domain (DUF35_N); InterPro: IPR022002 This domain has no known function and is found in conserved hypothetical archaeal and bacterial proteins. The domain is duplicated in O53566 from SWISSPROT. The structure of a DUF35 representative reveals two long N-terminal helices followed by a rubredoxin-like zinc ribbon domain represented in this family and a C-terminal OB fold domain. Zinc is chelated by the four conserved cysteines in the alignment. ; PDB: 3IRB_A.
Probab=30.64 E-value=20 Score=20.81 Aligned_cols=8 Identities=63% Similarity=1.514 Sum_probs=2.7
Q ss_pred ccccccce
Q 022481 29 HCRCCGRT 36 (296)
Q Consensus 29 hCr~Cg~~ 36 (296)
+|+.||.+
T Consensus 13 rC~~Cg~~ 20 (37)
T PF12172_consen 13 RCRDCGRV 20 (37)
T ss_dssp E-TTT--E
T ss_pred EcCCCCCE
Confidence 45555555
No 322
>PRK08351 DNA-directed RNA polymerase subunit E''; Validated
Probab=30.41 E-value=30 Score=22.92 Aligned_cols=16 Identities=31% Similarity=0.625 Sum_probs=9.8
Q ss_pred ccccccceE----cCCCCCC
Q 022481 29 HCRCCGRTL----CHEHSSD 44 (296)
Q Consensus 29 hCr~Cg~~~----C~~c~~~ 44 (296)
-||.|.+|+ |..|.+.
T Consensus 5 AC~~C~~i~~~~~CP~Cgs~ 24 (61)
T PRK08351 5 ACRHCHYITTEDRCPVCGSR 24 (61)
T ss_pred hhhhCCcccCCCcCCCCcCC
Confidence 577777765 5555543
No 323
>PRK04179 rpl37e 50S ribosomal protein L37e; Reviewed
Probab=30.35 E-value=24 Score=23.39 Aligned_cols=7 Identities=71% Similarity=1.735 Sum_probs=4.5
Q ss_pred cccccce
Q 022481 30 CRCCGRT 36 (296)
Q Consensus 30 Cr~Cg~~ 36 (296)
||.||+.
T Consensus 20 CrRCG~~ 26 (62)
T PRK04179 20 CRRCGRH 26 (62)
T ss_pred hcccCcc
Confidence 6666654
No 324
>COG1645 Uncharacterized Zn-finger containing protein [General function prediction only]
Probab=29.78 E-value=27 Score=26.96 Aligned_cols=26 Identities=27% Similarity=0.572 Sum_probs=17.3
Q ss_pred ccccccccccccccccccccccccceEcCCCCCC
Q 022481 11 ATRCDVCKCSFNTFRRRHHCRCCGRTLCHEHSSD 44 (296)
Q Consensus 11 ~~~C~~C~~~f~~~~r~hhCr~Cg~~~C~~c~~~ 44 (296)
..+|..|+.+. |+ .=|.|||..|-..
T Consensus 28 ~~hCp~Cg~PL--F~------KdG~v~CPvC~~~ 53 (131)
T COG1645 28 AKHCPKCGTPL--FR------KDGEVFCPVCGYR 53 (131)
T ss_pred HhhCcccCCcc--ee------eCCeEECCCCCce
Confidence 35788888753 32 2478888888743
No 325
>COG1998 RPS31 Ribosomal protein S27AE [Translation, ribosomal structure and biogenesis]
Probab=29.68 E-value=30 Score=21.82 Aligned_cols=24 Identities=29% Similarity=0.585 Sum_probs=12.3
Q ss_pred cccccccc-ccccc-ccccccccccc
Q 022481 12 TRCDVCKC-SFNTF-RRRHHCRCCGR 35 (296)
Q Consensus 12 ~~C~~C~~-~f~~~-~r~hhCr~Cg~ 35 (296)
..|..|+. .|-.. ..|.+|-.||.
T Consensus 20 ~~CPrCG~gvfmA~H~dR~~CGkCgy 45 (51)
T COG1998 20 RFCPRCGPGVFMADHKDRWACGKCGY 45 (51)
T ss_pred ccCCCCCCcchhhhcCceeEeccccc
Confidence 45666665 34322 23556666654
No 326
>PF10892 DUF2688: Protein of unknown function (DUF2688); InterPro: IPR024392 Members of this protein family are annotated as KleB, and may play a role in the regulation of transcription in plasmids.
Probab=29.63 E-value=17 Score=23.42 Aligned_cols=11 Identities=36% Similarity=1.153 Sum_probs=8.4
Q ss_pred ccccccccceE
Q 022481 27 RHHCRCCGRTL 37 (296)
Q Consensus 27 ~hhCr~Cg~~~ 37 (296)
.-+||+||.-+
T Consensus 10 ~t~CrRCGk~i 20 (60)
T PF10892_consen 10 ETPCRRCGKSI 20 (60)
T ss_pred eehhhhhCccH
Confidence 35899999864
No 327
>PLN02189 cellulose synthase
Probab=29.37 E-value=35 Score=35.61 Aligned_cols=55 Identities=16% Similarity=0.407 Sum_probs=40.1
Q ss_pred cccccccccccccccc---cccccccccceEcCCCCCCceecCCCCCCCceeccccchhhhcccC
Q 022481 10 EATRCDVCKCSFNTFR---RRHHCRCCGRTLCHEHSSDQMTLPQFGIHTNVRVCADCFNSSSRTG 71 (296)
Q Consensus 10 ~~~~C~~C~~~f~~~~---r~hhCr~Cg~~~C~~c~~~~~~~~~~~~~~~~rvC~~C~~~~~~~~ 71 (296)
....|.+|+-..++.. --.-|.-||.-+|..|-.+.. ..-...|..|...+.+..
T Consensus 33 ~~~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer-------~eg~q~CpqCkt~Y~r~k 90 (1040)
T PLN02189 33 DGQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYER-------REGTQNCPQCKTRYKRLK 90 (1040)
T ss_pred cCccccccccccCcCCCCCEEEeeccCCCccccchhhhhh-------hcCCccCcccCCchhhcc
Confidence 4568999999776321 126799999999999975532 345678999988877554
No 328
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=29.23 E-value=11 Score=21.07 Aligned_cols=15 Identities=27% Similarity=0.549 Sum_probs=10.6
Q ss_pred ccccceEcCCCCCCc
Q 022481 31 RCCGRTLCHEHSSDQ 45 (296)
Q Consensus 31 r~Cg~~~C~~c~~~~ 45 (296)
..||.+||..|....
T Consensus 14 ~~C~H~~c~~C~~~~ 28 (39)
T smart00184 14 LPCGHTFCRSCIRKW 28 (39)
T ss_pred ecCCChHHHHHHHHH
Confidence 458888888886543
No 329
>COG3364 Zn-ribbon containing protein [General function prediction only]
Probab=29.21 E-value=20 Score=26.26 Aligned_cols=12 Identities=33% Similarity=0.908 Sum_probs=10.1
Q ss_pred ccccccccceEc
Q 022481 27 RHHCRCCGRTLC 38 (296)
Q Consensus 27 ~hhCr~Cg~~~C 38 (296)
-|.|-+||.+|=
T Consensus 2 pH~CtrCG~vf~ 13 (112)
T COG3364 2 PHQCTRCGEVFD 13 (112)
T ss_pred Cceecccccccc
Confidence 389999999983
No 330
>PF01907 Ribosomal_L37e: Ribosomal protein L37e; InterPro: IPR001569 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. A number of eukaryotic and archaeal ribosomal proteins can be grouped on the basis of sequence similarities. One of these families consists of proteins of 56 to 96 amino-acid residues that share a highly conserved region located in the N-terminal part.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 4A19_A 4A1D_A 4A18_A 4A1B_A 1S1I_Y 3O5H_d 3IZS_l 3O58_d 2ZKR_2 3IZR_l ....
Probab=28.93 E-value=33 Score=22.18 Aligned_cols=7 Identities=71% Similarity=1.739 Sum_probs=3.8
Q ss_pred cccccce
Q 022481 30 CRCCGRT 36 (296)
Q Consensus 30 Cr~Cg~~ 36 (296)
||.||..
T Consensus 18 CrRCG~~ 24 (55)
T PF01907_consen 18 CRRCGRR 24 (55)
T ss_dssp -TTTSSE
T ss_pred ecccCCe
Confidence 6666665
No 331
>PF06397 Desulfoferrod_N: Desulfoferrodoxin, N-terminal domain; InterPro: IPR004462 This domain is found as essentially the full length of desulforedoxin, a 37-residue homodimeric non-haem iron protein. It is also found as the N-terminal domain of desulfoferrodoxin (rbo), a homodimeric non-haem iron protein with 2 Fe atoms per monomer in different oxidation states. This domain binds the ferric rather than the ferrous Fe of desulfoferrodoxin. Neelaredoxin, a monomeric blue non-haem iron protein, lacks this domain.; GO: 0005506 iron ion binding; PDB: 1DFX_A 1VZI_B 2JI2_D 1VZH_B 2JI3_C 2JI1_C 1VZG_A 1CFW_A 2LK5_B 1DHG_B ....
Probab=28.54 E-value=27 Score=20.50 Aligned_cols=11 Identities=27% Similarity=0.769 Sum_probs=6.2
Q ss_pred ccccccccceE
Q 022481 27 RHHCRCCGRTL 37 (296)
Q Consensus 27 ~hhCr~Cg~~~ 37 (296)
-+.|..||.||
T Consensus 6 ~YkC~~CGniV 16 (36)
T PF06397_consen 6 FYKCEHCGNIV 16 (36)
T ss_dssp EEE-TTT--EE
T ss_pred EEEccCCCCEE
Confidence 46788999887
No 332
>COG5273 Uncharacterized protein containing DHHC-type Zn finger [General function prediction only]
Probab=28.07 E-value=28 Score=31.25 Aligned_cols=25 Identities=32% Similarity=0.763 Sum_probs=16.2
Q ss_pred cccccccccccccccccccccccccce
Q 022481 10 EATRCDVCKCSFNTFRRRHHCRCCGRT 36 (296)
Q Consensus 10 ~~~~C~~C~~~f~~~~r~hhCr~Cg~~ 36 (296)
....|..|+. -.--|-|||+.|++-
T Consensus 108 ~~~~C~~C~~--~KP~RS~HC~~Cn~C 132 (309)
T COG5273 108 TENFCSTCNI--YKPPRSHHCSICNRC 132 (309)
T ss_pred cceecccccc--ccCCCCccchhhcch
Confidence 3455666654 223488999988875
No 333
>PF05191 ADK_lid: Adenylate kinase, active site lid; InterPro: IPR007862 Adenylate kinases (ADK; 2.7.4.3 from EC) are phosphotransferases that catalyse the Mg-dependent reversible conversion of ATP and AMP to two molecules of ADP, an essential reaction for many processes in living cells. In large variants of adenylate kinase, the AMP and ATP substrates are buried in a domain that undergoes conformational changes from an open to a closed state when bound to substrate; the ligand is then contained within a highly specific environment required for catalysis. Adenylate kinase is a 3-domain protein consisting of a large central CORE domain flanked by a LID domain on one side and the AMP-binding NMPbind domain on the other []. The LID domain binds ATP and covers the phosphates at the active site. The substrates first bind the CORE domain, followed by closure of the active site by the LID and NMPbind domains. Comparisons of adenylate kinases have revealed a particular divergence in the active site lid. In some organisms, particularly the Gram-positive bacteria, residues in the lid domain have been mutated to cysteines and these cysteine residues (two CX(n)C motifs) are responsible for the binding of a zinc ion. The bound zinc ion in the lid domain is clearly structurally homologous to Zinc-finger domains. However, it is unclear whether the adenylate kinase lid is a novel zinc-finger DNA/RNA binding domain, or that the lid bound zinc serves a purely structural function [].; GO: 0004017 adenylate kinase activity; PDB: 3BE4_A 2OSB_B 2ORI_A 2EU8_A 3DL0_A 1P3J_A 2QAJ_A 2OO7_A 2P3S_A 3DKV_A ....
Probab=27.75 E-value=29 Score=20.31 Aligned_cols=33 Identities=24% Similarity=0.498 Sum_probs=19.2
Q ss_pred cccccccceEcCCCCCCceecCCCCCCCceeccccchhhhccc
Q 022481 28 HHCRCCGRTLCHEHSSDQMTLPQFGIHTNVRVCADCFNSSSRT 70 (296)
Q Consensus 28 hhCr~Cg~~~C~~c~~~~~~~~~~~~~~~~rvC~~C~~~~~~~ 70 (296)
.-|..||.+| +. .+.-.+.--+|+.|-..|.++
T Consensus 2 r~C~~Cg~~Y------h~----~~~pP~~~~~Cd~cg~~L~qR 34 (36)
T PF05191_consen 2 RICPKCGRIY------HI----EFNPPKVEGVCDNCGGELVQR 34 (36)
T ss_dssp EEETTTTEEE------ET----TTB--SSTTBCTTTTEBEBEE
T ss_pred cCcCCCCCcc------cc----ccCCCCCCCccCCCCCeeEeC
Confidence 4578888887 11 111124457899888776544
No 334
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=27.63 E-value=21 Score=33.21 Aligned_cols=32 Identities=25% Similarity=0.543 Sum_probs=23.5
Q ss_pred cccccccccccccccccccccccccceEcCCCCCCc
Q 022481 10 EATRCDVCKCSFNTFRRRHHCRCCGRTLCHEHSSDQ 45 (296)
Q Consensus 10 ~~~~C~~C~~~f~~~~r~hhCr~Cg~~~C~~c~~~~ 45 (296)
..-.|.+|...|.. .---.||+.||..|....
T Consensus 25 ~~l~C~IC~d~~~~----PvitpCgH~FCs~CI~~~ 56 (397)
T TIGR00599 25 TSLRCHICKDFFDV----PVLTSCSHTFCSLCIRRC 56 (397)
T ss_pred cccCCCcCchhhhC----ccCCCCCCchhHHHHHHH
Confidence 45689999987752 123589999999997643
No 335
>KOG3183 consensus Predicted Zn-finger protein [General function prediction only]
Probab=27.44 E-value=25 Score=30.04 Aligned_cols=56 Identities=27% Similarity=0.606 Sum_probs=36.7
Q ss_pred ccccc--cccc-cccccccccccccccceEcCCCCCCceec-C-CCCCCCceeccccchhhhccc
Q 022481 11 ATRCD--VCKC-SFNTFRRRHHCRCCGRTLCHEHSSDQMTL-P-QFGIHTNVRVCADCFNSSSRT 70 (296)
Q Consensus 11 ~~~C~--~C~~-~f~~~~r~hhCr~Cg~~~C~~c~~~~~~~-~-~~~~~~~~rvC~~C~~~~~~~ 70 (296)
.++|. .|.+ -|= -.+|-.|+.|||.++-.+...- | .+.....|.||..|-.-+...
T Consensus 8 GkHCs~~~CkqlDFL----Pf~Cd~C~~~FC~eHrsye~H~Cp~~~~~~~~v~icp~cs~pv~~~ 68 (250)
T KOG3183|consen 8 GKHCSVPYCKQLDFL----PFKCDGCSGIFCLEHRSYESHHCPKGLRIDVQVPICPLCSKPVPTK 68 (250)
T ss_pred ccccCcchhhhcccc----ceeeCCccchhhhccchHhhcCCCcccccceeecccCCCCCCCCCC
Confidence 35676 6755 343 3589999999998886654221 1 122356789999998766544
No 336
>PRK05580 primosome assembly protein PriA; Validated
Probab=27.40 E-value=37 Score=34.11 Aligned_cols=15 Identities=33% Similarity=0.833 Sum_probs=8.1
Q ss_pred ccccccceE-cCCCCC
Q 022481 29 HCRCCGRTL-CHEHSS 43 (296)
Q Consensus 29 hCr~Cg~~~-C~~c~~ 43 (296)
.|+.||.++ |..|..
T Consensus 383 ~C~~Cg~~~~C~~C~~ 398 (679)
T PRK05580 383 LCRDCGWVAECPHCDA 398 (679)
T ss_pred EhhhCcCccCCCCCCC
Confidence 466666553 555543
No 337
>PF02945 Endonuclease_7: Recombination endonuclease VII; InterPro: IPR004211 This family of proteins which includes Bacteriophage T4 endonuclease VII, Mycobacteriophage D29 gene 59, and other as yet uncharacterised proteins. The T4 endonuclease VII (Endo VII) recognises a broad spectrum of DNA substrates ranging from branched DNAs to single base mismatches. The structure of this enzyme has been resolved and it was found that the monomers form an elongated, intertwined molecular dimer that exibits extreme domain swapping. Two pairs of antiparallel helices which form a novel 'four-helix cross' motif are the major dimerisation elements [].; PDB: 3GOX_A 3FC3_A 1EN7_B 1E7L_B 2QNF_A 2QNC_A 1E7D_A.
Probab=27.31 E-value=19 Score=25.37 Aligned_cols=26 Identities=27% Similarity=0.533 Sum_probs=13.4
Q ss_pred ccccccccccccccccc---cccccccce
Q 022481 11 ATRCDVCKCSFNTFRRR---HHCRCCGRT 36 (296)
Q Consensus 11 ~~~C~~C~~~f~~~~r~---hhCr~Cg~~ 36 (296)
...|.+|++++....++ =||..+|.|
T Consensus 22 ~~~C~iC~~~~~~~~~~~~vDHdH~tG~v 50 (81)
T PF02945_consen 22 GGRCAICGKPLPGESRKLVVDHDHKTGRV 50 (81)
T ss_dssp TTE-TTT-SEEETTCGGCEEEE-TTTTBE
T ss_pred CCcCcCCCCCcccCCCcceecCCCCCCCc
Confidence 35899999855433332 366666664
No 338
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=27.00 E-value=35 Score=22.88 Aligned_cols=29 Identities=24% Similarity=0.630 Sum_probs=13.1
Q ss_pred ccccccccccccccccccc-ccccceEcCCCCCC
Q 022481 12 TRCDVCKCSFNTFRRRHHC-RCCGRTLCHEHSSD 44 (296)
Q Consensus 12 ~~C~~C~~~f~~~~r~hhC-r~Cg~~~C~~c~~~ 44 (296)
-.|..|.. + -|.-+| -.|.++||..|.+.
T Consensus 8 LrCs~C~~---~-l~~pv~l~~CeH~fCs~Ci~~ 37 (65)
T PF14835_consen 8 LRCSICFD---I-LKEPVCLGGCEHIFCSSCIRD 37 (65)
T ss_dssp TS-SSS-S------SS-B---SSS--B-TTTGGG
T ss_pred cCCcHHHH---H-hcCCceeccCccHHHHHHhHH
Confidence 34555543 3 345555 78999999999855
No 339
>PF00569 ZZ: Zinc finger, ZZ type; InterPro: IPR000433 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents ZZ-type zinc finger domains, named because of their ability to bind two zinc ions []. These domains contain 4-6 Cys residues that participate in zinc binding (plus additional Ser/His residues), including a Cys-X2-Cys motif found in other zinc finger domains. These zinc fingers are thought to be involved in protein-protein interactions. The structure of the ZZ domain shows that it belongs to the family of cross-brace zinc finger motifs that include the PHD, RING, and FYVE domains []. ZZ-type zinc finger domains are found in: Transcription factors P300 and CBP. Plant proteins involved in light responses, such as Hrb1. E3 ubiquitin ligases MEX and MIB2 (6.3.2 from EC). Dystrophin and its homologues. Single copies of the ZZ zinc finger occur in the transcriptional adaptor/coactivator proteins P300, in cAMP response element-binding protein (CREB)-binding protein (CBP) and ADA2. CBP provides several binding sites for transcriptional coactivators. The site of interaction with the tumour suppressor protein p53 and the oncoprotein E1A with CBP/P300 is a Cys-rich region that incorporates two zinc-binding motifs: ZZ-type and TAZ2-type. The ZZ-type zinc finger of CBP contains two twisted anti-parallel beta-sheets and a short alpha-helix, and binds two zinc ions []. One zinc ion is coordinated by four cysteine residues via 2 Cys-X2-Cys motifs, and the third zinc ion via a third Cys-X-Cys motif and a His-X-His motif. The first zinc cluster is strictly conserved, whereas the second zinc cluster displays variability in the position of the two His residues. In Arabidopsis thaliana (Mouse-ear cress), the hypersensitive to red and blue 1 (Hrb1) protein, which regulating both red and blue light responses, contains a ZZ-type zinc finger domain []. ZZ-type zinc finger domains have also been identified in the testis-specific E3 ubiquitin ligase MEX that promotes death receptor-induced apoptosis []. MEX has four putative zinc finger domains: one ZZ-type, one SWIM-type and two RING-type. The region containing the ZZ-type and RING-type zinc fingers is required for interaction with UbcH5a and MEX self-association, whereas the SWIM domain was critical for MEX ubiquitination. In addition, the Cys-rich domains of dystrophin, utrophin and an 87kDa post-synaptic protein contain a ZZ-type zinc finger with high sequence identity to P300/CBP ZZ-type zinc fingers. In dystrophin and utrophin, the ZZ-type zinc finger lies between a WW domain (flanked by and EF hand) and the C-terminal coiled-coil domain. Dystrophin is thought to act as a link between the actin cytoskeleton and the extracellular matrix, and perturbations of the dystrophin-associated complex, for example, between dystrophin and the transmembrane glycoprotein beta-dystroglycan, may lead to muscular dystrophy. Dystrophin and its autosomal homologue utrophin interact with beta-dystroglycan via their C-terminal regions, which are comprised of a WW domain, an EF hand domain and a ZZ-type zinc finger domain []. The WW domain is the primary site of interaction between dystrophin or utrophin and dystroglycan, while the EF hand and ZZ-type zinc finger domains stabilise and strengthen this interaction. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 1TOT_A 2DIP_A 2FC7_A 2E5R_A.
Probab=26.98 E-value=20 Score=22.14 Aligned_cols=22 Identities=32% Similarity=0.720 Sum_probs=12.5
Q ss_pred ccccccccccccccccccccccc
Q 022481 11 ATRCDVCKCSFNTFRRRHHCRCC 33 (296)
Q Consensus 11 ~~~C~~C~~~f~~~~r~hhCr~C 33 (296)
...|..|+.. .....|+||..|
T Consensus 4 ~~~C~~C~~~-~i~g~Ry~C~~C 25 (46)
T PF00569_consen 4 GYTCDGCGTD-PIIGVRYHCLVC 25 (46)
T ss_dssp SCE-SSS-SS-SEESSEEEESSS
T ss_pred CeECcCCCCC-cCcCCeEECCCC
Confidence 4568888873 223457888776
No 340
>PF04181 RPAP2_Rtr1: Rtr1/RPAP2 family; InterPro: IPR007308 This entry represents a domain found in PAP2 (RNAP II associated polypeptide) protein and the yeast Rtr1 proteins. Its function is not known however it is thought to be a zinc finger.
Probab=26.83 E-value=25 Score=24.45 Aligned_cols=12 Identities=42% Similarity=1.027 Sum_probs=8.9
Q ss_pred cccccCCceeee
Q 022481 115 LECKCGMPLCIC 126 (296)
Q Consensus 115 ~~~~~~~p~c~~ 126 (296)
....||+|||.=
T Consensus 19 ~~~~CGYplC~~ 30 (79)
T PF04181_consen 19 INGLCGYPLCSN 30 (79)
T ss_pred hCCCCCCccCCC
Confidence 346899999853
No 341
>PLN02436 cellulose synthase A
Probab=26.81 E-value=46 Score=34.87 Aligned_cols=55 Identities=15% Similarity=0.366 Sum_probs=39.8
Q ss_pred cccccccccccccccc---cccccccccceEcCCCCCCceecCCCCCCCceeccccchhhhcccC
Q 022481 10 EATRCDVCKCSFNTFR---RRHHCRCCGRTLCHEHSSDQMTLPQFGIHTNVRVCADCFNSSSRTG 71 (296)
Q Consensus 10 ~~~~C~~C~~~f~~~~---r~hhCr~Cg~~~C~~c~~~~~~~~~~~~~~~~rvC~~C~~~~~~~~ 71 (296)
....|++|+-..++.. =-.-|.-||.-+|..|-.+. ...-...|..|...+.+..
T Consensus 35 ~~~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyeye-------r~eg~~~Cpqckt~Y~r~k 92 (1094)
T PLN02436 35 SGQTCQICGDEIELTVDGEPFVACNECAFPVCRPCYEYE-------RREGNQACPQCKTRYKRIK 92 (1094)
T ss_pred CCccccccccccCcCCCCCEEEeeccCCCccccchhhhh-------hhcCCccCcccCCchhhcc
Confidence 4569999999765321 12679999999999997543 2345678999988877554
No 342
>PHA02926 zinc finger-like protein; Provisional
Probab=26.79 E-value=12 Score=31.73 Aligned_cols=56 Identities=13% Similarity=0.192 Sum_probs=32.5
Q ss_pred cccccccccccccc-----ccccccccccceEcCCCCCCceecCCCCCCCceeccccchhhhc
Q 022481 11 ATRCDVCKCSFNTF-----RRRHHCRCCGRTLCHEHSSDQMTLPQFGIHTNVRVCADCFNSSS 68 (296)
Q Consensus 11 ~~~C~~C~~~f~~~-----~r~hhCr~Cg~~~C~~c~~~~~~~~~~~~~~~~rvC~~C~~~~~ 68 (296)
...|.+|-....-- +|--.=..|+++||-.|-..+..-.. + .+..|-|..|...+.
T Consensus 170 E~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~-~-~~~~rsCPiCR~~f~ 230 (242)
T PHA02926 170 EKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRR-E-TGASDNCPICRTRFR 230 (242)
T ss_pred CCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhcc-c-cCcCCcCCCCcceee
Confidence 46788887642110 01112238999999999877654211 1 234667777766543
No 343
>cd02342 ZZ_UBA_plant Zinc finger, ZZ type. Zinc finger present in plant ubiquitin-associated (UBA) proteins. The ZZ motif coordinates a zinc ion and most likely participates in ligand binding or molecular scaffolding.
Probab=26.58 E-value=24 Score=21.61 Aligned_cols=29 Identities=21% Similarity=0.343 Sum_probs=16.0
Q ss_pred ccccccccccccccccccccccce-EcCCCC
Q 022481 13 RCDVCKCSFNTFRRRHHCRCCGRT-LCHEHS 42 (296)
Q Consensus 13 ~C~~C~~~f~~~~r~hhCr~Cg~~-~C~~c~ 42 (296)
.|..|+. +...-.|++|..|... +|..|-
T Consensus 2 ~CDgCg~-~PI~G~RykC~~C~dyDLC~~C~ 31 (43)
T cd02342 2 QCDGCGV-LPITGPRYKSKVKEDYDLCTICF 31 (43)
T ss_pred CCCCCCC-CcccccceEeCCCCCCccHHHHh
Confidence 4667775 2234457777776443 444443
No 344
>cd02339 ZZ_Mind_bomb Zinc finger, ZZ type. Zinc finger present in Drosophila Mind bomb (D-mib) and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Mind bomb is an E3 ubiqitin ligase that has been shown to regulate signaling by the Notch ligand Delta in Drosophila melanogaster.
Probab=26.51 E-value=26 Score=21.60 Aligned_cols=30 Identities=27% Similarity=0.634 Sum_probs=19.0
Q ss_pred ccccccccccccccccccccc-cceEcCCCCC
Q 022481 13 RCDVCKCSFNTFRRRHHCRCC-GRTLCHEHSS 43 (296)
Q Consensus 13 ~C~~C~~~f~~~~r~hhCr~C-g~~~C~~c~~ 43 (296)
.|..|++. .+...|++|..| ..-+|..|-.
T Consensus 2 ~Cd~C~~~-~i~G~RykC~~C~dyDLC~~C~~ 32 (45)
T cd02339 2 ICDTCRKQ-GIIGIRWKCAECPNYDLCTTCYH 32 (45)
T ss_pred CCCCCCCC-CcccCeEECCCCCCccchHHHhC
Confidence 47778752 233457888888 4556777644
No 345
>PF11023 DUF2614: Protein of unknown function (DUF2614); InterPro: IPR020912 This entry describes proteins of unknown function, which are thought to be membrane proteins.; GO: 0005887 integral to plasma membrane
Probab=26.39 E-value=26 Score=26.26 Aligned_cols=25 Identities=24% Similarity=0.554 Sum_probs=18.0
Q ss_pred ccccccccccccccccccccccceE
Q 022481 13 RCDVCKCSFNTFRRRHHCRCCGRTL 37 (296)
Q Consensus 13 ~C~~C~~~f~~~~r~hhCr~Cg~~~ 37 (296)
.|..|++..-.+-|.--|-+|++..
T Consensus 71 ~CP~C~K~TKmLGr~D~CM~C~~pL 95 (114)
T PF11023_consen 71 ECPNCGKQTKMLGRVDACMHCKEPL 95 (114)
T ss_pred ECCCCCChHhhhchhhccCcCCCcC
Confidence 5888888777777777777776543
No 346
>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A ....
Probab=26.35 E-value=34 Score=16.82 Aligned_cols=9 Identities=33% Similarity=1.294 Sum_probs=3.5
Q ss_pred ccccccceE
Q 022481 29 HCRCCGRTL 37 (296)
Q Consensus 29 hCr~Cg~~~ 37 (296)
.|..||..|
T Consensus 2 ~C~~C~~~~ 10 (24)
T PF13894_consen 2 QCPICGKSF 10 (24)
T ss_dssp E-SSTS-EE
T ss_pred CCcCCCCcC
Confidence 355555544
No 347
>PHA00733 hypothetical protein
Probab=26.35 E-value=29 Score=26.74 Aligned_cols=14 Identities=21% Similarity=0.019 Sum_probs=7.7
Q ss_pred cccccccccccccc
Q 022481 9 QEATRCDVCKCSFN 22 (296)
Q Consensus 9 ~~~~~C~~C~~~f~ 22 (296)
.....|.+|.+.|.
T Consensus 38 ~~~~~~~~~~~~~~ 51 (128)
T PHA00733 38 QKRLIRAVVKTLIY 51 (128)
T ss_pred hhhHHHHHHhhhcc
Confidence 34455666666554
No 348
>KOG4591 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=25.90 E-value=47 Score=27.76 Aligned_cols=47 Identities=28% Similarity=0.379 Sum_probs=35.1
Q ss_pred CCCCCcHHHHHHHcCCHHHHH-HHHHCCCC----CCccCCCCCCHhhHhhhc
Q 022481 228 DKQGMSLLHLAALFNRTDIAF-ILMESGAN----MDCKNAQGESPLDCAPVT 274 (296)
Q Consensus 228 d~~g~TpLh~A~~~g~~~iv~-~LL~~ga~----~~~~d~~g~TpL~~A~~~ 274 (296)
|.....|||-|+.-++.+++- |+++..+. +|-.|.+|..+|.+|...
T Consensus 219 d~kTe~~LHk~iki~REDVl~LYfie~dakiP~~LNd~D~nG~~ALdiAL~~ 270 (280)
T KOG4591|consen 219 DGKTENPLHKAIKIEREDVLFLYFIEMDAKIPGILNDADHNGALALDIALCR 270 (280)
T ss_pred cCCCcchhHHhhhccccceeeehhhhccccccccccccCCCchHHHHHHHHH
Confidence 345567899999888888754 56776654 466788899999988754
No 349
>COG1439 Predicted nucleic acid-binding protein, consists of a PIN domain and a Zn-ribbon module [General function prediction only]
Probab=25.87 E-value=33 Score=27.97 Aligned_cols=15 Identities=27% Similarity=0.621 Sum_probs=9.9
Q ss_pred ccccccccccccceE
Q 022481 23 TFRRRHHCRCCGRTL 37 (296)
Q Consensus 23 ~~~r~hhCr~Cg~~~ 37 (296)
.++.+..|..|+++|
T Consensus 135 v~~w~~rC~GC~~~f 149 (177)
T COG1439 135 VRKWRLRCHGCKRIF 149 (177)
T ss_pred EeeeeEEEecCceec
Confidence 344567777777775
No 350
>KOG0513 consensus Ca2+-independent phospholipase A2 [Lipid transport and metabolism]
Probab=25.57 E-value=3.3 Score=39.68 Aligned_cols=70 Identities=14% Similarity=0.036 Sum_probs=41.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHhhHhhhcCcHH
Q 022481 200 EGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCAPVTLQYK 278 (296)
Q Consensus 200 t~Lh~A~~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~iv~~LL~~ga~~~~~d~~g~TpL~~A~~~g~~~ 278 (296)
+.++........+.+..++.++..-+..+..|.|+||.+...++. +..++.. |-.+.+|+++....+...
T Consensus 138 ~~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~g~t~L~~tl~~~~~--~~~i~~l-------dl~~~~P~lf~~~~~~~~ 207 (503)
T KOG0513|consen 138 LALRILVSGDKYSGAEVLLTKYEIADAREVLGNTKLHLTLTKENL--LVVIPCL-------DLKSLTPNLFSIYDALGT 207 (503)
T ss_pred cceeeeecCccccceeecccccccchhhhhcCCceeeeeccCCCc--ceEEEee-------ccCcCCceeeeeeccccc
Confidence 366666666666666666666555555666788888887777666 2222222 223356666665544333
No 351
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=25.18 E-value=32 Score=17.84 Aligned_cols=20 Identities=25% Similarity=0.728 Sum_probs=9.3
Q ss_pred cccccccccccccccccccccc
Q 022481 14 CDVCKCSFNTFRRRHHCRCCGR 35 (296)
Q Consensus 14 C~~C~~~f~~~~r~hhCr~Cg~ 35 (296)
|..|+++..-- -.-|..||.
T Consensus 2 Cp~CG~~~~~~--~~fC~~CG~ 21 (23)
T PF13240_consen 2 CPNCGAEIEDD--AKFCPNCGT 21 (23)
T ss_pred CcccCCCCCCc--CcchhhhCC
Confidence 55566555421 122555553
No 352
>COG4338 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.85 E-value=15 Score=22.87 Aligned_cols=19 Identities=21% Similarity=0.441 Sum_probs=14.0
Q ss_pred Ccccccccccccccccccc
Q 022481 8 FQEATRCDVCKCSFNTFRR 26 (296)
Q Consensus 8 ~~~~~~C~~C~~~f~~~~r 26 (296)
+--.+.|..|+.+|+.-++
T Consensus 9 ~lp~KICpvCqRPFsWRkK 27 (54)
T COG4338 9 TLPDKICPVCQRPFSWRKK 27 (54)
T ss_pred ccchhhhhhhcCchHHHHH
Confidence 3345789999999986543
No 353
>PRK06393 rpoE DNA-directed RNA polymerase subunit E''; Validated
Probab=24.76 E-value=34 Score=22.91 Aligned_cols=16 Identities=31% Similarity=0.814 Sum_probs=10.6
Q ss_pred cccccccceE----cCCCCC
Q 022481 28 HHCRCCGRTL----CHEHSS 43 (296)
Q Consensus 28 hhCr~Cg~~~----C~~c~~ 43 (296)
.-||.|.+|+ |..|.+
T Consensus 6 ~AC~~C~~i~~~~~Cp~Cgs 25 (64)
T PRK06393 6 RACKKCKRLTPEKTCPVHGD 25 (64)
T ss_pred hhHhhCCcccCCCcCCCCCC
Confidence 3588888886 555544
No 354
>PF01667 Ribosomal_S27e: Ribosomal protein S27; InterPro: IPR000592 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. A number of eukaryotic and archaeal ribosomal proteins can be grouped on the basis of sequence similarities. One of these families include mammalian, yeast, Chlamydomonas reinhardtii and Entamoeba histolytica S27, and Methanocaldococcus jannaschii (Methanococcus jannaschii) MJ0250 []. These proteins have from 62 to 87 amino acids. They contain, in their central section, a putative zinc-finger region of the type C-x(2)-C-x(14)-C-x(2)-C.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 1QXF_A 3IZ6_X 2XZN_6 2XZM_6 3U5G_b 3IZB_X 3U5C_b.
Probab=24.46 E-value=47 Score=21.51 Aligned_cols=26 Identities=27% Similarity=0.666 Sum_probs=11.7
Q ss_pred ccccccc---cccccccccccccccceEc
Q 022481 13 RCDVCKC---SFNTFRRRHHCRCCGRTLC 38 (296)
Q Consensus 13 ~C~~C~~---~f~~~~r~hhCr~Cg~~~C 38 (296)
.|..|.+ -|+--.....|..||.++|
T Consensus 9 kCp~C~~~q~vFSha~t~V~C~~Cg~~L~ 37 (55)
T PF01667_consen 9 KCPGCYNIQTVFSHAQTVVKCVVCGTVLA 37 (55)
T ss_dssp E-TTT-SEEEEETT-SS-EE-SSSTSEEE
T ss_pred ECCCCCCeeEEEecCCeEEEcccCCCEec
Confidence 4556655 3554445556666666654
No 355
>cd04476 RPA1_DBD_C RPA1_DBD_C: A subfamily of OB folds corresponding to the C-terminal OB fold, the ssDNA-binding domain (DBD)-C, of human RPA1 (also called RPA70). RPA1 is the large subunit of Replication protein A (RPA). RPA is a nuclear ssDNA-binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). In addition to DBD-C, RPA1 contains three other OB folds: DBD-A, DBD-B, and RPA1N. The major DNA binding activity of RPA is associated with RPA1 DBD-A and DBD-B. RPA1 DBD-C is involved in DNA binding and trimerization. It contains two structural insertions not found to date in other OB-folds: a zinc ribbon and a three-helix bundle. RPA1 DBD-C also contains a Cys4-type zinc-binding motif, which plays a role in the ssDNA binding fun
Probab=24.10 E-value=35 Score=27.30 Aligned_cols=26 Identities=15% Similarity=0.433 Sum_probs=19.2
Q ss_pred cccccccccccccc-cccccccccceE
Q 022481 12 TRCDVCKCSFNTFR-RRHHCRCCGRTL 37 (296)
Q Consensus 12 ~~C~~C~~~f~~~~-r~hhCr~Cg~~~ 37 (296)
..|..|+++...-. ....|..|+..+
T Consensus 35 ~aC~~C~kkv~~~~~~~~~C~~C~~~~ 61 (166)
T cd04476 35 PACPGCNKKVVEEGNGTYRCEKCNKSV 61 (166)
T ss_pred ccccccCcccEeCCCCcEECCCCCCcC
Confidence 46888988876554 678888887765
No 356
>PF13790 DUF4182: Domain of unknown function (DUF4182)
Probab=23.95 E-value=52 Score=19.54 Aligned_cols=30 Identities=17% Similarity=0.382 Sum_probs=14.5
Q ss_pred cceEcCCCCCCceecCCCCCCCceeccccc
Q 022481 34 GRTLCHEHSSDQMTLPQFGIHTNVRVCADC 63 (296)
Q Consensus 34 g~~~C~~c~~~~~~~~~~~~~~~~rvC~~C 63 (296)
|-|+|..|-..-..++.-+...-.-+|..|
T Consensus 2 GtIvCq~C~~~Id~~e~ekV~~lYg~C~~~ 31 (38)
T PF13790_consen 2 GTIVCQHCNETIDHFETEKVTTLYGKCGKC 31 (38)
T ss_pred CEEEeccccceeeeecCCcEEEEEEECCCC
Confidence 567777775543333333322333445544
No 357
>PF00641 zf-RanBP: Zn-finger in Ran binding protein and others; InterPro: IPR001876 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the zinc finger domain found in RanBP2 proteins. Ran is an evolutionary conserved member of the Ras superfamily that regulates all receptor-mediated transport between the nucleus and the cytoplasm. Ran binding protein 2 (RanBP2) is a 358kDa nucleoporin located on the cytoplasmic side of the nuclear pore complex which plays a role in nuclear protein import []. RanBP2 contains multiple zinc fingers which mediate binding to RanGDP []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9G_A 2EBR_A 2WX0_C 2WX1_C 2WWZ_C 3GJ6_B 2LK0_A 2LK1_A 3GJ5_B 3GJ8_B ....
Probab=23.50 E-value=36 Score=18.64 Aligned_cols=20 Identities=35% Similarity=0.911 Sum_probs=8.9
Q ss_pred cccccccccccccccccccccc
Q 022481 14 CDVCKCSFNTFRRRHHCRCCGR 35 (296)
Q Consensus 14 C~~C~~~f~~~~r~hhCr~Cg~ 35 (296)
|..|. |.-+.++-+|..||.
T Consensus 7 C~~C~--~~N~~~~~~C~~C~~ 26 (30)
T PF00641_consen 7 CPSCT--FMNPASRSKCVACGA 26 (30)
T ss_dssp ETTTT--EEEESSSSB-TTT--
T ss_pred CCCCc--CCchHHhhhhhCcCC
Confidence 44444 334445666776653
No 358
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=23.39 E-value=30 Score=22.35 Aligned_cols=30 Identities=10% Similarity=0.063 Sum_probs=19.0
Q ss_pred ccccccccccccccccccccccceEcCCCCCCce
Q 022481 13 RCDVCKCSFNTFRRRHHCRCCGRTLCHEHSSDQM 46 (296)
Q Consensus 13 ~C~~C~~~f~~~~r~hhCr~Cg~~~C~~c~~~~~ 46 (296)
.|.+|++.|.- --...||++||..|....+
T Consensus 3 ~Cpi~~~~~~~----Pv~~~~G~v~~~~~i~~~~ 32 (63)
T smart00504 3 LCPISLEVMKD----PVILPSGQTYERRAIEKWL 32 (63)
T ss_pred CCcCCCCcCCC----CEECCCCCEEeHHHHHHHH
Confidence 46677776543 2345778888887765543
No 359
>PF03966 Trm112p: Trm112p-like protein; InterPro: IPR005651 This family of short proteins have no known function. The bacterial members are about 60-70 amino acids in length and the eukaryotic examples are about 120 amino acids in length. The C terminus contains the strongest conservation. The function of this family is uncertain. The bacterial members are about 60-70 amino acids in length and the eukaryotic examples are about 120 amino acids in length. The C terminus contains the strongest conservation. The entry contains 2 families: Trm112, which is required for tRNA methylation in Saccharomyces cerevisiae (Baker's yeast) and is found in complexes with 2 tRNA methylases (TRM9 and TRM11) also with putative methyltransferase YDR140W []. The zinc-finger protein Ynr046w is plurifunctional and a component of the eRF1 methyltransferase in yeast []. The crystal structure of Ynr046w has been determined to 1.7 A resolution. It comprises a zinc-binding domain built from both the N- and C-terminal sequences and an inserted domain, absent from bacterial and archaeal orthologs of the protein, composed of three alpha-helices []. UPF0434, which are proteins that are functionally uncharacterised. ; PDB: 3Q87_A 2KPI_A 2K5R_A 2HF1_A 2JS4_A 2J6A_A 2JR6_A 2PK7_A 2JNY_A.
Probab=23.33 E-value=50 Score=22.16 Aligned_cols=14 Identities=29% Similarity=0.622 Sum_probs=7.3
Q ss_pred cccccccccccceE
Q 022481 24 FRRRHHCRCCGRTL 37 (296)
Q Consensus 24 ~~r~hhCr~Cg~~~ 37 (296)
....-.|+.||+.|
T Consensus 50 ~eg~L~Cp~c~r~Y 63 (68)
T PF03966_consen 50 VEGELICPECGREY 63 (68)
T ss_dssp TTTEEEETTTTEEE
T ss_pred cCCEEEcCCCCCEE
Confidence 33455555555554
No 360
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=23.18 E-value=59 Score=28.78 Aligned_cols=29 Identities=21% Similarity=0.503 Sum_probs=22.0
Q ss_pred cccccccccccccccccccccccceEcCCCCCC
Q 022481 12 TRCDVCKCSFNTFRRRHHCRCCGRTLCHEHSSD 44 (296)
Q Consensus 12 ~~C~~C~~~f~~~~r~hhCr~Cg~~~C~~c~~~ 44 (296)
..|.+|.+.|-.-. =-.||..||..|+..
T Consensus 242 f~c~icr~~f~~pV----vt~c~h~fc~~ca~~ 270 (313)
T KOG1813|consen 242 FKCFICRKYFYRPV----VTKCGHYFCEVCALK 270 (313)
T ss_pred ccccccccccccch----hhcCCceeehhhhcc
Confidence 45999999886322 246999999999865
No 361
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=22.96 E-value=60 Score=32.39 Aligned_cols=48 Identities=17% Similarity=0.556 Sum_probs=32.0
Q ss_pred cccccccccccccccccccccccce----EcCCCCCCceecCCCCCCCceeccccchhhhcc
Q 022481 12 TRCDVCKCSFNTFRRRHHCRCCGRT----LCHEHSSDQMTLPQFGIHTNVRVCADCFNSSSR 69 (296)
Q Consensus 12 ~~C~~C~~~f~~~~r~hhCr~Cg~~----~C~~c~~~~~~~~~~~~~~~~rvC~~C~~~~~~ 69 (296)
..|..|+..-.- .-.-|..||.- +|..|... .....+.|..|-..+..
T Consensus 2 ~~Cp~Cg~~n~~--~akFC~~CG~~l~~~~Cp~CG~~--------~~~~~~fC~~CG~~~~~ 53 (645)
T PRK14559 2 LICPQCQFENPN--NNRFCQKCGTSLTHKPCPQCGTE--------VPVDEAHCPNCGAETGT 53 (645)
T ss_pred CcCCCCCCcCCC--CCccccccCCCCCCCcCCCCCCC--------CCcccccccccCCcccc
Confidence 468888876432 34468888876 47777644 13457899999766543
No 362
>PRK12495 hypothetical protein; Provisional
Probab=22.87 E-value=43 Score=28.33 Aligned_cols=27 Identities=22% Similarity=0.489 Sum_probs=18.4
Q ss_pred cccccccccccccccccccccccccceEcCCCCCC
Q 022481 10 EATRCDVCKCSFNTFRRRHHCRCCGRTLCHEHSSD 44 (296)
Q Consensus 10 ~~~~C~~C~~~f~~~~r~hhCr~Cg~~~C~~c~~~ 44 (296)
...+|..|+.+.- +.=|.+||..|-..
T Consensus 41 sa~hC~~CG~PIp--------a~pG~~~Cp~CQ~~ 67 (226)
T PRK12495 41 TNAHCDECGDPIF--------RHDGQEFCPTCQQP 67 (226)
T ss_pred chhhcccccCccc--------CCCCeeECCCCCCc
Confidence 3578999999754 33467777777543
No 363
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=22.83 E-value=36 Score=31.09 Aligned_cols=11 Identities=27% Similarity=0.733 Sum_probs=7.2
Q ss_pred ccccccccccc
Q 022481 24 FRRRHHCRCCG 34 (296)
Q Consensus 24 ~~r~hhCr~Cg 34 (296)
.++|.+|++||
T Consensus 36 ~~gk~~C~RC~ 46 (441)
T COG4098 36 ENGKYRCNRCG 46 (441)
T ss_pred ccCcEEehhcC
Confidence 35667777766
No 364
>PF13005 zf-IS66: zinc-finger binding domain of transposase IS66 ; InterPro: IPR024474 This entry represents a predicted helix-turn-helix domain from insertion element IS66 transposases [].
Probab=22.62 E-value=47 Score=20.22 Aligned_cols=12 Identities=17% Similarity=0.512 Sum_probs=7.4
Q ss_pred cccccccccccc
Q 022481 12 TRCDVCKCSFNT 23 (296)
Q Consensus 12 ~~C~~C~~~f~~ 23 (296)
..|..|+..|..
T Consensus 3 ~~C~~Cg~~l~~ 14 (47)
T PF13005_consen 3 RACPDCGGELKE 14 (47)
T ss_pred CcCCCCCceeeE
Confidence 456667666653
No 365
>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A.
Probab=22.49 E-value=33 Score=17.57 Aligned_cols=10 Identities=50% Similarity=1.235 Sum_probs=7.4
Q ss_pred cccccccccc
Q 022481 13 RCDVCKCSFN 22 (296)
Q Consensus 13 ~C~~C~~~f~ 22 (296)
.|.+|++.|+
T Consensus 2 ~C~~C~~~f~ 11 (25)
T PF12874_consen 2 YCDICNKSFS 11 (25)
T ss_dssp EETTTTEEES
T ss_pred CCCCCCCCcC
Confidence 4777888776
No 366
>smart00401 ZnF_GATA zinc finger binding to DNA consensus sequence [AT]GATA[AG].
Probab=22.19 E-value=72 Score=20.23 Aligned_cols=35 Identities=20% Similarity=0.345 Sum_probs=17.6
Q ss_pred cCCCCCCceecCCCCCCCceeccccchhhhcccCC
Q 022481 38 CHEHSSDQMTLPQFGIHTNVRVCADCFNSSSRTGK 72 (296)
Q Consensus 38 C~~c~~~~~~~~~~~~~~~~rvC~~C~~~~~~~~~ 72 (296)
|..|.....++-..+......+|..|--.......
T Consensus 6 C~~C~~~~T~~WR~g~~g~~~LCnaCgl~~~k~~~ 40 (52)
T smart00401 6 CSNCGTTETPLWRRGPSGNKTLCNACGLYYKKHGG 40 (52)
T ss_pred cCCCCCCCCCccccCCCCCCcEeecccHHHHHcCC
Confidence 33443333333333333446778888766655433
No 367
>KOG0006 consensus E3 ubiquitin-protein ligase (Parkin protein) [Posttranslational modification, protein turnover, chaperones]
Probab=22.04 E-value=21 Score=31.76 Aligned_cols=28 Identities=25% Similarity=0.611 Sum_probs=20.9
Q ss_pred ccccccc--cccccccccc-ccceEcCCCCC
Q 022481 16 VCKCSFN--TFRRRHHCRC-CGRTLCHEHSS 43 (296)
Q Consensus 16 ~C~~~f~--~~~r~hhCr~-Cg~~~C~~c~~ 43 (296)
.|+..|- .-.||..|.. ||.+||.+|-.
T Consensus 322 gCG~gll~EPD~rkvtC~~gCgf~FCR~C~e 352 (446)
T KOG0006|consen 322 GCGAGLLPEPDQRKVTCEGGCGFAFCRECKE 352 (446)
T ss_pred CCCcccccCCCCCcccCCCCchhHhHHHHHh
Confidence 3666443 2358999998 99999999864
No 368
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=22.03 E-value=43 Score=24.75 Aligned_cols=15 Identities=27% Similarity=0.640 Sum_probs=11.5
Q ss_pred cccccccceEcCCCC
Q 022481 28 HHCRCCGRTLCHEHS 42 (296)
Q Consensus 28 hhCr~Cg~~~C~~c~ 42 (296)
..|+.||+|++-.+.
T Consensus 74 ~~C~~Cg~i~~~~~~ 88 (116)
T cd07153 74 LICTKCGKVIDFEDC 88 (116)
T ss_pred eEeCCCCCEEEecCc
Confidence 458999999987654
No 369
>KOG1595 consensus CCCH-type Zn-finger protein [General function prediction only]
Probab=22.02 E-value=19 Score=34.35 Aligned_cols=63 Identities=10% Similarity=-0.038 Sum_probs=48.1
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHHCC-CCCCccCCCCCCHhhHhhh---cCcHHHHHHHHHcCCCCCCCC
Q 022481 230 QGMSLLHLAALFNRTDIAFILMESG-ANMDCKNAQGESPLDCAPV---TLQYKMRQKMEEDKNNVGSTT 294 (296)
Q Consensus 230 ~g~TpLh~A~~~g~~~iv~~LL~~g-a~~~~~d~~g~TpL~~A~~---~g~~~iv~~Ll~~gadi~~~n 294 (296)
+-.|+|++|+..|.++++.+++..+ .++|..-.+|.. |.++. .|..+.+..|+..++..+++|
T Consensus 57 ~qR~~~~v~~~~Gs~~~~~~i~~~~~~e~~~~C~~~~~--~C~~~g~s~~~~e~~~hL~~~k~~~~~td 123 (528)
T KOG1595|consen 57 NQRRRRPVARRDGSFNYSPDIYCTKYDEVTGICPDGDE--HCAVLGRSVGDTERTYHLRYYKTLPCVTD 123 (528)
T ss_pred ccccccchhhhcCccccccceeecchhhccccCCCCcc--cchhcccccCCcceeEeccccccccCccc
Confidence 4579999999999999999887653 667766666666 44443 466788888888888888765
No 370
>TIGR01031 rpmF_bact ribosomal protein L32. This protein describes bacterial ribosomal protein L32. The noise cutoff is set low enough to include the equivalent protein from mitochondria and chloroplasts. No related proteins from the Archaea nor from the eukaryotic cytosol are detected by this model. This model is a fragment model; the putative L32 of some species shows similarity only toward the N-terminus.
Probab=21.78 E-value=64 Score=20.83 Aligned_cols=8 Identities=50% Similarity=1.207 Sum_probs=3.8
Q ss_pred ceeccccc
Q 022481 56 NVRVCADC 63 (296)
Q Consensus 56 ~~rvC~~C 63 (296)
+.+||..|
T Consensus 38 ~H~vc~~c 45 (55)
T TIGR01031 38 PHRVCPSC 45 (55)
T ss_pred CeeECCcc
Confidence 44444444
No 371
>COG0375 HybF Zn finger protein HypA/HybF (possibly regulating hydrogenase expression) [General function prediction only]
Probab=21.58 E-value=39 Score=25.53 Aligned_cols=22 Identities=23% Similarity=0.444 Sum_probs=10.4
Q ss_pred cccccccccccccccccccccc
Q 022481 13 RCDVCKCSFNTFRRRHHCRCCG 34 (296)
Q Consensus 13 ~C~~C~~~f~~~~r~hhCr~Cg 34 (296)
.|..|+..|..-.-.+-|..||
T Consensus 72 ~C~~C~~~~~~e~~~~~CP~C~ 93 (115)
T COG0375 72 WCLDCGQEVELEELDYRCPKCG 93 (115)
T ss_pred EeccCCCeecchhheeECCCCC
Confidence 4555555555433333344444
No 372
>smart00778 Prim_Zn_Ribbon Zinc-binding domain of primase-helicase. This region represents the zinc binding domain. It is found in the N-terminal region of the bacteriophage P4 alpha protein, which is a multifunctional protein with origin recognition, helicase and primase activities.
Probab=21.40 E-value=53 Score=19.35 Aligned_cols=14 Identities=21% Similarity=0.361 Sum_probs=8.6
Q ss_pred cccccccc--cccccc
Q 022481 12 TRCDVCKC--SFNTFR 25 (296)
Q Consensus 12 ~~C~~C~~--~f~~~~ 25 (296)
.-|..|+- .|.+-.
T Consensus 4 ~pCP~CGG~DrFr~~d 19 (37)
T smart00778 4 GPCPNCGGSDRFRFDD 19 (37)
T ss_pred cCCCCCCCcccccccc
Confidence 35777866 577433
No 373
>COG2051 RPS27A Ribosomal protein S27E [Translation, ribosomal structure and biogenesis]
Probab=21.34 E-value=57 Score=21.98 Aligned_cols=26 Identities=31% Similarity=0.666 Sum_probs=14.1
Q ss_pred ccccccc---cccccccccccccccceEc
Q 022481 13 RCDVCKC---SFNTFRRRHHCRCCGRTLC 38 (296)
Q Consensus 13 ~C~~C~~---~f~~~~r~hhCr~Cg~~~C 38 (296)
.|..|+. -|+--.....|-.||.+++
T Consensus 21 kCpdC~N~q~vFshast~V~C~~CG~~l~ 49 (67)
T COG2051 21 KCPDCGNEQVVFSHASTVVTCLICGTTLA 49 (67)
T ss_pred ECCCCCCEEEEeccCceEEEecccccEEE
Confidence 4555544 3554445556666666654
No 374
>KOG1313 consensus DHHC-type Zn-finger proteins [General function prediction only]
Probab=21.32 E-value=40 Score=29.54 Aligned_cols=25 Identities=28% Similarity=0.759 Sum_probs=17.3
Q ss_pred cccccccccccccccccccccccccce
Q 022481 10 EATRCDVCKCSFNTFRRRHHCRCCGRT 36 (296)
Q Consensus 10 ~~~~C~~C~~~f~~~~r~hhCr~Cg~~ 36 (296)
..+.|..|..+= --|-|||+.|++-
T Consensus 101 ~~SfC~KC~~pK--~prTHHCsiC~kC 125 (309)
T KOG1313|consen 101 NDSFCNKCNYPK--SPRTHHCSICNKC 125 (309)
T ss_pred cccHHhhcCCCC--CCCcchhhHHhhH
Confidence 356787777643 3478999988764
No 375
>PRK06260 threonine synthase; Validated
Probab=21.27 E-value=54 Score=30.45 Aligned_cols=25 Identities=20% Similarity=0.460 Sum_probs=19.3
Q ss_pred cccccccccccccccccccccccce
Q 022481 12 TRCDVCKCSFNTFRRRHHCRCCGRT 36 (296)
Q Consensus 12 ~~C~~C~~~f~~~~r~hhCr~Cg~~ 36 (296)
-.|..|++.|..-...+.|..||..
T Consensus 4 ~~C~~cg~~~~~~~~~~~Cp~cg~~ 28 (397)
T PRK06260 4 LKCIECGKEYDPDEIIYTCPECGGL 28 (397)
T ss_pred EEECCCCCCCCCCCccccCCCCCCe
Confidence 4689999999866556779888755
No 376
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=20.64 E-value=2.4e+02 Score=28.85 Aligned_cols=6 Identities=17% Similarity=0.091 Sum_probs=2.7
Q ss_pred CHhhHh
Q 022481 266 SPLDCA 271 (296)
Q Consensus 266 TpL~~A 271 (296)
|-||+-
T Consensus 862 TLLHfL 867 (1102)
T KOG1924|consen 862 TLLHFL 867 (1102)
T ss_pred HHHHHH
Confidence 444443
No 377
>cd02338 ZZ_PCMF_like Zinc finger, ZZ type. Zinc finger present in potassium channel modulatory factor (PCMF) 1 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Human potassium channel modulatory factor 1 or FIGC has been shown to possess intrinsic E3 ubiquitin ligase activity and to promote ubiquitination.
Probab=20.61 E-value=37 Score=21.25 Aligned_cols=19 Identities=42% Similarity=1.018 Sum_probs=11.6
Q ss_pred cccccc-ccccccccccccccc
Q 022481 13 RCDVCK-CSFNTFRRRHHCRCC 33 (296)
Q Consensus 13 ~C~~C~-~~f~~~~r~hhCr~C 33 (296)
.|..|+ +++. -.|++|..|
T Consensus 2 ~C~~C~~~~i~--g~R~~C~~C 21 (49)
T cd02338 2 SCDGCGKSNFT--GRRYKCLIC 21 (49)
T ss_pred CCCCCcCCCcE--EeeEEeCCC
Confidence 477777 4454 356666666
No 378
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=20.58 E-value=43 Score=22.04 Aligned_cols=29 Identities=24% Similarity=0.810 Sum_probs=18.8
Q ss_pred ccccccccceEcCCCCCCceecCCCCCCCceecc-ccchhhhcccC
Q 022481 27 RHHCRCCGRTLCHEHSSDQMTLPQFGIHTNVRVC-ADCFNSSSRTG 71 (296)
Q Consensus 27 ~hhCr~Cg~~~C~~c~~~~~~~~~~~~~~~~rvC-~~C~~~~~~~~ 71 (296)
..||..||.-+ | ...+.| ..|.+.+.+.+
T Consensus 3 HkHC~~CG~~I-----------p-----~~~~fCS~~C~~~~~k~q 32 (59)
T PF09889_consen 3 HKHCPVCGKPI-----------P-----PDESFCSPKCREEYRKRQ 32 (59)
T ss_pred CCcCCcCCCcC-----------C-----cchhhhCHHHHHHHHHHH
Confidence 46999998643 2 246778 47877765543
No 379
>smart00355 ZnF_C2H2 zinc finger.
Probab=20.41 E-value=40 Score=16.71 Aligned_cols=10 Identities=40% Similarity=0.933 Sum_probs=7.0
Q ss_pred cccccccccc
Q 022481 13 RCDVCKCSFN 22 (296)
Q Consensus 13 ~C~~C~~~f~ 22 (296)
.|..|++.|.
T Consensus 2 ~C~~C~~~f~ 11 (26)
T smart00355 2 RCPECGKVFK 11 (26)
T ss_pred CCCCCcchhC
Confidence 4777777776
No 380
>cd00029 C1 Protein kinase C conserved region 1 (C1) . Cysteine-rich zinc binding domain. Some members of this domain family bind phorbol esters and diacylglycerol, some are reported to bind RasGTP. May occur in tandem arrangement. Diacylglycerol (DAG) is a second messenger, released by activation of Phospholipase D. Phorbol Esters (PE) can act as analogues of DAG and mimic its downstream effects in, for example, tumor promotion. Protein Kinases C are activated by DAG/PE, this activation is mediated by their N-terminal conserved region (C1). DAG/PE binding may be phospholipid dependent. C1 domains may also mediate DAG/PE signals in chimaerins (a family of Rac GTPase activating proteins), RasGRPs (exchange factors for Ras/Rap1), and Munc13 isoforms (scaffolding proteins involved in exocytosis).
Probab=20.38 E-value=41 Score=20.45 Aligned_cols=34 Identities=24% Similarity=0.514 Sum_probs=23.4
Q ss_pred ccccccccccccccc-ccccccccccceEcCCCCC
Q 022481 10 EATRCDVCKCSFNTF-RRRHHCRCCGRTLCHEHSS 43 (296)
Q Consensus 10 ~~~~C~~C~~~f~~~-~r~hhCr~Cg~~~C~~c~~ 43 (296)
....|..|++.+..+ .--..|+.|+..+=.+|..
T Consensus 10 ~~~~C~~C~~~i~~~~~~~~~C~~C~~~~H~~C~~ 44 (50)
T cd00029 10 KPTFCDVCRKSIWGLFKQGLRCSWCKVKCHKKCAD 44 (50)
T ss_pred CCCChhhcchhhhccccceeEcCCCCCchhhhhhc
Confidence 356799999987654 4556788887776555543
No 381
>PF09845 DUF2072: Zn-ribbon containing protein (DUF2072); InterPro: IPR018645 This archaeal Zinc-ribbon containing proteins have no known function.
Probab=20.33 E-value=1.2e+02 Score=23.51 Aligned_cols=10 Identities=50% Similarity=1.348 Sum_probs=6.9
Q ss_pred cccccccceE
Q 022481 28 HHCRCCGRTL 37 (296)
Q Consensus 28 hhCr~Cg~~~ 37 (296)
|.|-+||++|
T Consensus 2 H~Ct~Cg~~f 11 (131)
T PF09845_consen 2 HQCTKCGRVF 11 (131)
T ss_pred cccCcCCCCc
Confidence 6677777766
No 382
>PRK11582 flagella biosynthesis protein FliZ; Provisional
Probab=20.27 E-value=31 Score=27.45 Aligned_cols=18 Identities=28% Similarity=0.597 Sum_probs=15.3
Q ss_pred cccccccceEcCCCCCCc
Q 022481 28 HHCRCCGRTLCHEHSSDQ 45 (296)
Q Consensus 28 hhCr~Cg~~~C~~c~~~~ 45 (296)
--||.|+.|+|+.-..++
T Consensus 70 aLCRFCs~i~c~~~~~yF 87 (169)
T PRK11582 70 ALCRFCSDLHCNTQSDYF 87 (169)
T ss_pred HHHHHhhhhhcCCCCCee
Confidence 359999999999888765
No 383
>PRK12366 replication factor A; Reviewed
Probab=20.25 E-value=46 Score=33.18 Aligned_cols=25 Identities=20% Similarity=0.547 Sum_probs=20.7
Q ss_pred cccccccccccccccccccccccce
Q 022481 12 TRCDVCKCSFNTFRRRHHCRCCGRT 36 (296)
Q Consensus 12 ~~C~~C~~~f~~~~r~hhCr~Cg~~ 36 (296)
..|..|+++-.--....+|..||+.
T Consensus 533 ~aCp~CnkKv~~~~g~~~C~~c~~~ 557 (637)
T PRK12366 533 YLCPNCRKRVEEVDGEYICEFCGEV 557 (637)
T ss_pred ecccccCeEeEcCCCcEECCCCCCC
Confidence 6799999987655677899999988
No 384
>PRK07591 threonine synthase; Validated
Probab=20.25 E-value=58 Score=30.57 Aligned_cols=25 Identities=24% Similarity=0.514 Sum_probs=15.1
Q ss_pred cccccccccccccccccccccccceE
Q 022481 12 TRCDVCKCSFNTFRRRHHCRCCGRTL 37 (296)
Q Consensus 12 ~~C~~C~~~f~~~~r~hhCr~Cg~~~ 37 (296)
-.|..|++.|..-.. +.|..||..+
T Consensus 19 l~C~~Cg~~~~~~~~-~~C~~cg~~l 43 (421)
T PRK07591 19 LKCRECGAEYPLGPI-HVCEECFGPL 43 (421)
T ss_pred EEeCCCCCcCCCCCC-ccCCCCCCeE
Confidence 457777777764433 6666666443
Done!