Query 022483
Match_columns 296
No_of_seqs 132 out of 482
Neff 5.5
Searched_HMMs 46136
Date Fri Mar 29 03:53:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022483.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022483hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04832 SOUL: SOUL heme-bindi 100.0 3.4E-53 7.4E-58 370.6 16.0 175 100-292 1-176 (176)
2 PRK10016 DNA gyrase inhibitor; 97.1 0.072 1.6E-06 45.2 16.8 152 114-294 2-155 (156)
3 PF06445 GyrI-like: GyrI-like 97.1 0.041 9E-07 44.3 14.6 152 114-292 2-155 (155)
4 COG3449 DNA gyrase inhibitor [ 93.4 3.9 8.5E-05 35.9 13.8 148 114-291 2-149 (154)
5 smart00871 AraC_E_bind Bacteri 93.3 3.6 7.7E-05 32.9 16.1 156 115-292 2-158 (158)
6 COG3449 DNA gyrase inhibitor [ 92.3 0.56 1.2E-05 41.1 7.1 58 218-279 2-59 (154)
7 PRK10016 DNA gyrase inhibitor; 91.4 1.3 2.9E-05 37.4 8.4 68 218-291 2-71 (156)
8 PF06445 GyrI-like: GyrI-like 87.9 1.7 3.8E-05 34.7 6.2 72 218-292 2-74 (155)
9 smart00871 AraC_E_bind Bacteri 75.1 13 0.00029 29.5 6.9 61 218-278 1-61 (158)
10 COG4978 Transcriptional regula 66.2 25 0.00054 30.6 6.9 146 114-292 4-152 (153)
11 COG3708 Uncharacterized protei 52.1 1.2E+02 0.0026 26.4 8.8 70 218-294 85-157 (157)
12 PRK15121 right oriC-binding tr 51.2 50 0.0011 30.7 6.7 88 196-293 195-289 (289)
13 COG4978 Transcriptional regula 42.9 2E+02 0.0043 25.0 8.7 42 217-259 3-44 (153)
14 PF05924 SAMP: SAMP Motif; In 41.3 17 0.00037 21.4 1.2 15 72-86 4-18 (20)
15 PF05127 Helicase_RecD: Helica 27.2 42 0.00092 29.9 2.0 45 121-170 114-160 (177)
16 PHA00159 endonuclease I 20.2 1.3E+02 0.0029 26.1 3.6 46 249-294 22-69 (148)
No 1
>PF04832 SOUL: SOUL heme-binding protein; InterPro: IPR006917 This family represents a group of putative haem-binding proteins []. It includes archaeal and bacterial homologues.; PDB: 2HVA_A 2GOV_A 4A1M_A 3R85_E 2YC9_A 3R8K_B 3R8J_B.
Probab=100.00 E-value=3.4e-53 Score=370.57 Aligned_cols=175 Identities=42% Similarity=0.655 Sum_probs=136.7
Q ss_pred CcCCCCeEEEEecCCeEEEEeCCeeEEEEEcCCCCccChhhhhHHHHHHHHhhccCCCCCcccCCCcceEEEeecCCCcc
Q 022483 100 DLETVKFKVLSRRGQYEIREVESYFIAETTMPGRTGFDLNGASRSFNVLAEYLFGKNTKRETMEMTTPVITRKTQSDGEK 179 (296)
Q Consensus 100 ~~E~P~Y~Vl~~~~~yEiR~Y~~~~wasT~v~g~s~~~~~a~~~gF~~L~~YI~G~N~~~~kI~MTaPV~t~~~~~~gek 179 (296)
++|||+|+||++.++||||+|++++||+|++.+++. ..|...||++|++||+|+|+++++|+||+||++++.
T Consensus 1 ~~E~P~Y~v~~~~~~~EiR~Y~~~~w~~t~~~~~~~--~~a~~~~f~~L~~Yi~G~N~~~~ki~mT~PV~~~~~------ 72 (176)
T PF04832_consen 1 DIECPPYEVLKKGDDYEIRRYPPAKWASTTVSGCSF--EEASSSGFRRLFRYIFGKNSAGEKIAMTAPVLTQVI------ 72 (176)
T ss_dssp --BS-SEEEECCCSSCEEEEE--CEEEEEEEECS-H--HHHHHHHHHHHHHHHCT-CTT------BS-EEEEEE------
T ss_pred CCcCCCeEEEEeCCCEEEEEECCceEEEEEecCCCh--hHHHHHHHHHHHHHHhcCCcccceeeccCCEEEEEE------
Confidence 579999999999999999999999999999987542 246789999999999999999999999999999873
Q ss_pred cccccccccccccCCCeEEEEEEeecCCC-CCCCCCCCCCeEEEEecCeEEEEEEeCCcCChHHHHHHHHHHHHHHhcCC
Q 022483 180 MEMTTPVISKKLEDQDKWQMSFVMPSKYG-ANLPLPKDPSVRIKEVPKKVVAVVAFSGFVTDEDVKRRELKLRDALKGDR 258 (296)
Q Consensus 180 i~mT~Pv~~~~~~~~~~~tmsF~lP~~~q-~~pP~P~d~~V~I~~~P~~~vaV~~F~G~~t~~~v~~~~~~L~~~L~~~g 258 (296)
+|++. .|++.|+|+|+||.+|| ++||+|+|++|+|+++|++++||++|+|+++++++.+++++|+++|+++|
T Consensus 73 -~~~~~------~~~~~~t~~f~lP~~~~~~~~P~P~d~~V~i~~~p~~~~~v~~F~G~~~~~~~~~~~~~L~~~L~~~g 145 (176)
T PF04832_consen 73 -PMTAE------SCEKEYTMSFFLPSEYQAENPPKPTDPDVFIEEVPERTVYVRRFSGFATDEKIQEEAKKLRAALKKDG 145 (176)
T ss_dssp -ETTTT------TCECEEEEEEE--HHHC-TS---BSSTTEEEEEC-SEEEEEEEECS--SHHHHHHHHHHHHHHCCCTT
T ss_pred -cCCCc------ccCCcEEEEEEcCcccccccCCCCCCCeEEEEEecCcEEEEEEECCcCCHHHHHHHHHHHHHHHHHcC
Confidence 23331 25689999999999999 89999999999999999999999999999999999999999999999999
Q ss_pred CcceecCCcEEEEEeCCCCCCCCCCceeEEEEee
Q 022483 259 QFRVKEGASVEVAQYNPPFTLPFTRRNEIALEVE 292 (296)
Q Consensus 259 ~~~v~~~~~~~~A~YDpP~t~p~~RrNEVwi~v~ 292 (296)
+. +.+.+++|+||+||+++++|||||||+||
T Consensus 146 ~~---~~~~~~~a~Yd~P~~~~~~R~NEV~i~v~ 176 (176)
T PF04832_consen 146 LK---DKGYYYVAGYDPPFTPPFNRRNEVWIPVK 176 (176)
T ss_dssp HH---CCCEEEEEESSSS-SSSSSSCEEEEEE--
T ss_pred CC---cCCCeEEEEcCCCCCCccCcceEEEEecC
Confidence 63 67899999999999989999999999986
No 2
>PRK10016 DNA gyrase inhibitor; Provisional
Probab=97.06 E-value=0.072 Score=45.21 Aligned_cols=152 Identities=17% Similarity=0.184 Sum_probs=95.8
Q ss_pred CeEEEEeCCeeEEEEEcCCCCccChhhhhHHHHHHHHhhccCCCCCcccCCCcceEEEeecCCCcccccccccccccccC
Q 022483 114 QYEIREVESYFIAETTMPGRTGFDLNGASRSFNVLAEYLFGKNTKRETMEMTTPVITRKTQSDGEKMEMTTPVISKKLED 193 (296)
Q Consensus 114 ~yEiR~Y~~~~wasT~v~g~s~~~~~a~~~gF~~L~~YI~G~N~~~~kI~MTaPV~t~~~~~~geki~mT~Pv~~~~~~~ 193 (296)
+++|+..++...|.....|... +...++|.+|+.++..+|-. .+ +.+...... |-.+.. .
T Consensus 2 ~v~i~~~~~~~va~ir~~g~~~---~~~~~~~~~L~~~~~~~~l~-----~~-~~~~i~~D~---------p~~~~~--~ 61 (156)
T PRK10016 2 NYEIKQEQKRTIAGFHLVGPWE---QTVKQGFEQLMMWVDSHNIV-----PK-EWVAVYYDN---------PDEVPA--E 61 (156)
T ss_pred ceEEEEccCceEEEEEeecCch---hHHHHHHHHHHHHHHHcCCC-----CC-cEEEEECCC---------CCCCCh--H
Confidence 4789999999999888777321 23467999999999665532 12 334332211 211110 0
Q ss_pred CCeEEEEEEeecCCCCCCCCCCCCCeEEEEecCeEEEEEEeCCcCChHHHHHHHHH-HHHHHhcCCCcceecCCcEEEEE
Q 022483 194 QDKWQMSFVMPSKYGANLPLPKDPSVRIKEVPKKVVAVVAFSGFVTDEDVKRRELK-LRDALKGDRQFRVKEGASVEVAQ 272 (296)
Q Consensus 194 ~~~~tmsF~lP~~~q~~pP~P~d~~V~I~~~P~~~vaV~~F~G~~t~~~v~~~~~~-L~~~L~~~g~~~v~~~~~~~~A~ 272 (296)
+-.+-++.-+|.... .| +.+..+.+..+|+.++||..+.|. -+.+.+.-.. +.+||..+|.. . .++ +.+-.
T Consensus 62 ~~R~d~~i~v~~~~~--~~-~~~~~~~~~~ip~g~yAv~~~~G~--~~~l~~~~~~i~~~Wl~~sgy~-~-~~~-p~~E~ 133 (156)
T PRK10016 62 KLRCDTVVTVPDDFV--LP-ENSEGVILTEIPGGQYAVAVARVV--DDDFAKPWYQFFNSLLQDSAYQ-M-APK-PCFEV 133 (156)
T ss_pred HceeeEEEEeCCCcc--cC-CCCCCeEEEEECCCcEEEEEEECC--HHHHHHHHHHHHHHhchhcCCc-c-CCC-CCEEE
Confidence 114778889986532 22 223479999999999999999995 4557776666 77899999963 2 222 23334
Q ss_pred e-CCCCCCCCCCceeEEEEeecc
Q 022483 273 Y-NPPFTLPFTRRNEIALEVERK 294 (296)
Q Consensus 273 Y-DpP~t~p~~RrNEVwi~v~~~ 294 (296)
| +.|... -.-.-||||+|+.+
T Consensus 134 Y~~~~~~~-~~~~tei~iPI~~~ 155 (156)
T PRK10016 134 YLNDGAED-GYWDIEMYVPVQKK 155 (156)
T ss_pred eCCCCCCC-CcEEEEEEEEeEEC
Confidence 4 345433 22246999999853
No 3
>PF06445 GyrI-like: GyrI-like small molecule binding domain; InterPro: IPR010499 This domain is found in the probable effector binding domain of a number of different bacterial transcription activators [] and is also present in some DNA gyrase inhibitors. The absence of a HTH motif in the DNA gyrase inhibitors is thought to indicate the fact that these do not bind DNA.; PDB: 1JYH_A 1D5Y_B 3B49_A 3E0H_A 2KCU_A 3LUR_B 1EXI_A 3Q3D_A 1EXJ_A 3Q5S_A ....
Probab=97.05 E-value=0.041 Score=44.28 Aligned_cols=152 Identities=14% Similarity=0.135 Sum_probs=96.5
Q ss_pred CeEEEEeCCeeEEEEEcCCCCccChhh-hhHHHHHHHHhhccCCCCCcccCCCcceEEEeecCCCccccccccccccccc
Q 022483 114 QYEIREVESYFIAETTMPGRTGFDLNG-ASRSFNVLAEYLFGKNTKRETMEMTTPVITRKTQSDGEKMEMTTPVISKKLE 192 (296)
Q Consensus 114 ~yEiR~Y~~~~wasT~v~g~s~~~~~a-~~~gF~~L~~YI~G~N~~~~kI~MTaPV~t~~~~~~geki~mT~Pv~~~~~~ 192 (296)
+++|+.-++...+.....+... ..+ ....+.+|..++.-.+... ...+.+.......... .+
T Consensus 2 ~~~i~~~p~~~v~~~~~~~~~~--~~~~i~~~~~~l~~~~~~~~~~~----~~~~~~~i~~~~~~~~-----------~~ 64 (155)
T PF06445_consen 2 EVEIVTLPAFRVAGIRRKGPYE--EEDSIPELWQRLMSWLKEIGLST----DPGPIIGIYYDNPNIT-----------DD 64 (155)
T ss_dssp CEEEEEEEEEEEEEEEEEEEHH--HHHHHHHHHHHHHHHHHHHHHCC----SSSSEEEEEEECCTSS-----------TG
T ss_pred CcEEEEECCEEEEEEEEEECCc--hhhhHHHHHHHHHHHHHHhhccc----CCCcceeEEecccccc-----------CC
Confidence 5788889999998877655211 111 4577888888885332111 4555655543321100 00
Q ss_pred CCCeEEEEEEeecCCCCCCCCCCCCCeEEEEecCeEEEEEEeCCcCChHHHHHHHHHHHH-HHhcCCCcceecCCcEEEE
Q 022483 193 DQDKWQMSFVMPSKYGANLPLPKDPSVRIKEVPKKVVAVVAFSGFVTDEDVKRRELKLRD-ALKGDRQFRVKEGASVEVA 271 (296)
Q Consensus 193 ~~~~~tmsF~lP~~~q~~pP~P~d~~V~I~~~P~~~vaV~~F~G~~t~~~v~~~~~~L~~-~L~~~g~~~v~~~~~~~~A 271 (296)
..-.+.+++-++... +...++....+|+..+|+..|.|-. +.+.+....|.. ||.++|+. ...+..+-.
T Consensus 65 ~~~~~~~~~~~~~~~------~~~~~~~~~~ip~g~ya~~~~~G~~--~~l~~~~~~l~~~~l~~~g~~--~~~~~~~E~ 134 (155)
T PF06445_consen 65 EEFRYDIGVEVDEDV------PNPDGMESRTIPAGKYAVFEHKGPY--DDLQEAYQKLYNEWLPESGYE--RRDGPDFEI 134 (155)
T ss_dssp CEEEEEEEEEECTTC------SGCTTSEEEEEECEEEEEEEEESCG--HGHHHHHHHHHHCHHHHCTCE--EESSEEEEE
T ss_pred cceEEEEEEEEcccc------cCCceEEEEEEcCcEEEEEEEEccH--HHHHHHHHHHHhhhHHHCCCc--cCCCCcEEE
Confidence 122445555555432 4557888999999999999999977 778888999999 99999973 233433334
Q ss_pred EeCCCCCCCCCCceeEEEEee
Q 022483 272 QYNPPFTLPFTRRNEIALEVE 292 (296)
Q Consensus 272 ~YDpP~t~p~~RrNEVwi~v~ 292 (296)
.++.|+..+-.-.=||||+|+
T Consensus 135 y~~~~~~~~~~~~~ei~iPik 155 (155)
T PF06445_consen 135 YLNDPDTDEEEYVTEIYIPIK 155 (155)
T ss_dssp EESSTTTTSCGEEEEEEEEEE
T ss_pred ECCCCCCCCCceEEEEEEEEC
Confidence 445555333466679999986
No 4
>COG3449 DNA gyrase inhibitor [DNA replication, recombination, and repair]
Probab=93.36 E-value=3.9 Score=35.87 Aligned_cols=148 Identities=18% Similarity=0.200 Sum_probs=92.4
Q ss_pred CeEEEEeCCeeEEEEEcCCCCccChhhhhHHHHHHHHhhccCCCCCcccCCCcceEEEeecCCCcccccccccccccccC
Q 022483 114 QYEIREVESYFIAETTMPGRTGFDLNGASRSFNVLAEYLFGKNTKRETMEMTTPVITRKTQSDGEKMEMTTPVISKKLED 193 (296)
Q Consensus 114 ~yEiR~Y~~~~wasT~v~g~s~~~~~a~~~gF~~L~~YI~G~N~~~~kI~MTaPV~t~~~~~~geki~mT~Pv~~~~~~~ 193 (296)
++||+..++..+|.-...|. ..-..++|.+|+.|-.-+|--. -+..-+ -+..++.+ .| | . .
T Consensus 2 dv~I~e~p~~~VA~~rh~G~----~~~~~~~~~~l~~W~~~~~l~p----~~S~~~-gI~~ddP~---~T-p----~--e 62 (154)
T COG3449 2 DVEIIELPPIPVAYLRHVGD----PATLKQTFEQLIAWRRENGLLP----EQSETL-GIYQDDPD---TT-P----A--E 62 (154)
T ss_pred CceEEecCCceEEEEEeeCc----HHHHHHHHHHHHHHHHHcCCCC----CCceEE-EEecCCCC---CC-C----H--H
Confidence 78999999999998887772 2235689999999997665322 123333 23333321 11 1 1 1
Q ss_pred CCeEEEEEEeecCCCCCCCCCCCCCeEEEEecCeEEEEEEeCCcCChHHHHHHHHHHHHHHhcCCCcceecCCcEEEEEe
Q 022483 194 QDKWQMSFVMPSKYGANLPLPKDPSVRIKEVPKKVVAVVAFSGFVTDEDVKRRELKLRDALKGDRQFRVKEGASVEVAQY 273 (296)
Q Consensus 194 ~~~~tmsF~lP~~~q~~pP~P~d~~V~I~~~P~~~vaV~~F~G~~t~~~v~~~~~~L~~~L~~~g~~~v~~~~~~~~A~Y 273 (296)
+=.|-.+-.+|... .+++..|..-++|+..+||.+|.|.. +.--.--..-+.+||...|+. ..+.+.+.+|
T Consensus 63 ~~R~D~cv~v~~~~-----~~n~~~v~~~~i~GG~YAV~r~~~~~-d~~~~aw~~if~ewlp~Sg~~---~~d~P~~e~y 133 (154)
T COG3449 63 KCRYDACVVVPEPI-----PENSEGVQLGEIPGGLYAVARFRGTA-DDLAKAWGYIFGEWLPASGYE---PRDRPILERY 133 (154)
T ss_pred HceeeEEEEcCCcc-----CCCCCceeEeeecCCceEEEEEeccH-HHHHHHHHHHHhhhccccCcc---cCCCchHHHH
Confidence 23567788887322 23557799999999999999999954 222333344556778888753 4566777888
Q ss_pred CCCCCCCCCCceeEEEEe
Q 022483 274 NPPFTLPFTRRNEIALEV 291 (296)
Q Consensus 274 DpP~t~p~~RrNEVwi~v 291 (296)
=..... .-..|+.+.+
T Consensus 134 ~n~~~~--~~~~e~~vdi 149 (154)
T COG3449 134 LNFPAE--DPEHEIEVDI 149 (154)
T ss_pred hccCCC--CcceeEEEEE
Confidence 443333 2334444443
No 5
>smart00871 AraC_E_bind Bacterial transcription activator, effector binding domain. This domain is found in the probable effector binding domain of a number of different bacterial transcription activators PUBMED:10802742 and is also present in some DNA gyrase inhibitors. The absence of a HTH motif in the DNA gyrase inhibitors is thought to indicate the fact that these do not bind DNA.
Probab=93.25 E-value=3.6 Score=32.94 Aligned_cols=156 Identities=13% Similarity=0.137 Sum_probs=85.0
Q ss_pred eEEEEeCCeeEEEEEcCCCCccChhhhhHHHHHHHHhhccCCCCCcccCCCcceEEEeecCCCcccccccccccccccCC
Q 022483 115 YEIREVESYFIAETTMPGRTGFDLNGASRSFNVLAEYLFGKNTKRETMEMTTPVITRKTQSDGEKMEMTTPVISKKLEDQ 194 (296)
Q Consensus 115 yEiR~Y~~~~wasT~v~g~s~~~~~a~~~gF~~L~~YI~G~N~~~~kI~MTaPV~t~~~~~~geki~mT~Pv~~~~~~~~ 194 (296)
+++..-++...+.....+... .....+.|.+|+.++...+....... .+++.......... + ...
T Consensus 2 ~~i~~~~~~~v~~~~~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~-----~------~~~ 66 (158)
T smart00871 2 VRIVELPAFKVAGLRHRGPYE--EEKIPELWQRLIAWAKELGLLPIGPS--GPPYGVYYDDPDDT-----P------EGE 66 (158)
T ss_pred CEEEEcCCceEEEEEeecCcc--cccHHHHHHHHHHHHHHcCCCCCCCC--ccEEEEECCCCCCC-----C------hhH
Confidence 345555566666555544321 11235678888888865543322211 23333222111100 0 011
Q ss_pred CeEEEEEEeecCCCCCCCCCCCCCeEEEEecCeEEEEEEeCCcCChHHHHHHHHHHHHHHhcCCCcceecCCcEEEEEeC
Q 022483 195 DKWQMSFVMPSKYGANLPLPKDPSVRIKEVPKKVVAVVAFSGFVTDEDVKRRELKLRDALKGDRQFRVKEGASVEVAQYN 274 (296)
Q Consensus 195 ~~~tmsF~lP~~~q~~pP~P~d~~V~I~~~P~~~vaV~~F~G~~t~~~v~~~~~~L~~~L~~~g~~~v~~~~~~~~A~YD 274 (296)
-.+.+++.++... . ....+.+..+|+..+++..|.| ...+.+.+-..+|..++..+|.....+.+..+--.++
T Consensus 67 ~~~~~g~~v~~~~--~----~~~~~~~~~~p~~~y~~~~~~g-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~E~y~~ 139 (158)
T smart00871 67 FRYDAGVEVSDEV--E----NPEGVETKEIPAGKYAVFTHKG-GSYDEIQETWEAIYGEWLPNSGYELRDAGPDFEIYLN 139 (158)
T ss_pred eEEEEEEEeCCCC--C----CCCCceEEEECCCcEEEEEEcC-CCHHHHHHHHHHHHHhhcccCCCccCcCCceEEEEeC
Confidence 2445555555421 1 1246889999999999999999 3467789999999999988875422122333333345
Q ss_pred CCCC-CCCCCceeEEEEee
Q 022483 275 PPFT-LPFTRRNEIALEVE 292 (296)
Q Consensus 275 pP~t-~p~~RrNEVwi~v~ 292 (296)
.|.. .+-..+-|++|+|+
T Consensus 140 ~~~~~~~~~~~~ei~ipv~ 158 (158)
T smart00871 140 DPADTDPEELVTEIYIPIK 158 (158)
T ss_pred CCCCCChhHeEEEEEEEcC
Confidence 5432 22234678998874
No 6
>COG3449 DNA gyrase inhibitor [DNA replication, recombination, and repair]
Probab=92.30 E-value=0.56 Score=41.08 Aligned_cols=58 Identities=21% Similarity=0.142 Sum_probs=48.4
Q ss_pred CeEEEEecCeEEEEEEeCCcCChHHHHHHHHHHHHHHhcCCCcceecCCcEEEEEeCCCCCC
Q 022483 218 SVRIKEVPKKVVAVVAFSGFVTDEDVKRRELKLRDALKGDRQFRVKEGASVEVAQYNPPFTL 279 (296)
Q Consensus 218 ~V~I~~~P~~~vaV~~F~G~~t~~~v~~~~~~L~~~L~~~g~~~v~~~~~~~~A~YDpP~t~ 279 (296)
+|.|.+.|+..||..+-.| ....+.+-.++|.+|.+++|+. ...+....-.||.|-+.
T Consensus 2 dv~I~e~p~~~VA~~rh~G--~~~~~~~~~~~l~~W~~~~~l~--p~~S~~~gI~~ddP~~T 59 (154)
T COG3449 2 DVEIIELPPIPVAYLRHVG--DPATLKQTFEQLIAWRRENGLL--PEQSETLGIYQDDPDTT 59 (154)
T ss_pred CceEEecCCceEEEEEeeC--cHHHHHHHHHHHHHHHHHcCCC--CCCceEEEEecCCCCCC
Confidence 7999999999999999999 7888999999999999999985 23455566677888643
No 7
>PRK10016 DNA gyrase inhibitor; Provisional
Probab=91.37 E-value=1.3 Score=37.41 Aligned_cols=68 Identities=18% Similarity=0.140 Sum_probs=50.7
Q ss_pred CeEEEEecCeEEEEEEeCCcCChHHHHHHHHHHHHHHhcCCCcceecCCcEEEEEeCCC--CCCCCCCceeEEEEe
Q 022483 218 SVRIKEVPKKVVAVVAFSGFVTDEDVKRRELKLRDALKGDRQFRVKEGASVEVAQYNPP--FTLPFTRRNEIALEV 291 (296)
Q Consensus 218 ~V~I~~~P~~~vaV~~F~G~~t~~~v~~~~~~L~~~L~~~g~~~v~~~~~~~~A~YDpP--~t~p~~RrNEVwi~v 291 (296)
+|.|+++|+..++.++..|...+ .+.+...+|.+++.++|+. .. .+....||.| ... -.-|-+|.|.+
T Consensus 2 ~v~i~~~~~~~va~ir~~g~~~~-~~~~~~~~L~~~~~~~~l~---~~-~~~~i~~D~p~~~~~-~~~R~d~~i~v 71 (156)
T PRK10016 2 NYEIKQEQKRTIAGFHLVGPWEQ-TVKQGFEQLMMWVDSHNIV---PK-EWVAVYYDNPDEVPA-EKLRCDTVVTV 71 (156)
T ss_pred ceEEEEccCceEEEEEeecCchh-HHHHHHHHHHHHHHHcCCC---CC-cEEEEECCCCCCCCh-HHceeeEEEEe
Confidence 58999999999999999996643 4778889999999999974 23 3677788999 443 23344454444
No 8
>PF06445 GyrI-like: GyrI-like small molecule binding domain; InterPro: IPR010499 This domain is found in the probable effector binding domain of a number of different bacterial transcription activators [] and is also present in some DNA gyrase inhibitors. The absence of a HTH motif in the DNA gyrase inhibitors is thought to indicate the fact that these do not bind DNA.; PDB: 1JYH_A 1D5Y_B 3B49_A 3E0H_A 2KCU_A 3LUR_B 1EXI_A 3Q3D_A 1EXJ_A 3Q5S_A ....
Probab=87.93 E-value=1.7 Score=34.66 Aligned_cols=72 Identities=21% Similarity=0.133 Sum_probs=55.1
Q ss_pred CeEEEEecCeEEEEEEeCCcCChHH-HHHHHHHHHHHHhcCCCcceecCCcEEEEEeCCCCCCCCCCceeEEEEee
Q 022483 218 SVRIKEVPKKVVAVVAFSGFVTDED-VKRRELKLRDALKGDRQFRVKEGASVEVAQYNPPFTLPFTRRNEIALEVE 292 (296)
Q Consensus 218 ~V~I~~~P~~~vaV~~F~G~~t~~~-v~~~~~~L~~~L~~~g~~~v~~~~~~~~A~YDpP~t~p~~RrNEVwi~v~ 292 (296)
+|+|+++|+.+++..+..|-..+.. +.+..++|.+++...++. .....++...||.|... ...+...++-+.
T Consensus 2 ~~~i~~~p~~~v~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~--~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~ 74 (155)
T PF06445_consen 2 EVEIVTLPAFRVAGIRRKGPYEEEDSIPELWQRLMSWLKEIGLS--TDPGPIIGIYYDNPNIT-DDEEFRYDIGVE 74 (155)
T ss_dssp CEEEEEEEEEEEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHC--CSSSSEEEEEEECCTSS-TGCEEEEEEEEE
T ss_pred CcEEEEECCEEEEEEEEEECCchhhhHHHHHHHHHHHHHHhhcc--cCCCcceeEEecccccc-CCcceEEEEEEE
Confidence 5899999999999999999887777 899999999999998753 14556777778888543 255566555444
No 9
>smart00871 AraC_E_bind Bacterial transcription activator, effector binding domain. This domain is found in the probable effector binding domain of a number of different bacterial transcription activators PUBMED:10802742 and is also present in some DNA gyrase inhibitors. The absence of a HTH motif in the DNA gyrase inhibitors is thought to indicate the fact that these do not bind DNA.
Probab=75.10 E-value=13 Score=29.52 Aligned_cols=61 Identities=21% Similarity=0.148 Sum_probs=45.3
Q ss_pred CeEEEEecCeEEEEEEeCCcCChHHHHHHHHHHHHHHhcCCCcceecCCcEEEEEeCCCCC
Q 022483 218 SVRIKEVPKKVVAVVAFSGFVTDEDVKRRELKLRDALKGDRQFRVKEGASVEVAQYNPPFT 278 (296)
Q Consensus 218 ~V~I~~~P~~~vaV~~F~G~~t~~~v~~~~~~L~~~L~~~g~~~v~~~~~~~~A~YDpP~t 278 (296)
.+.|.++|+..++..++.|...+..+.+.-.+|.+++...+.......+..+...|+.|..
T Consensus 1 ~~~i~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 61 (158)
T smart00871 1 EVRIVELPAFKVAGLRHRGPYEEEKIPELWQRLIAWAKELGLLPIGPSGPPYGVYYDDPDD 61 (158)
T ss_pred CCEEEEcCCceEEEEEeecCcccccHHHHHHHHHHHHHHcCCCCCCCCccEEEEECCCCCC
Confidence 3688999999999999999877556778888899998888753111224567777777764
No 10
>COG4978 Transcriptional regulator, effector-binding domain/component [Transcription / Signal transduction mechanisms]
Probab=66.24 E-value=25 Score=30.59 Aligned_cols=146 Identities=16% Similarity=0.217 Sum_probs=85.1
Q ss_pred CeEEEEeCCeeEEEEEcCCCCccChhhhhHHHHHHHHhhccCCCCCcccCCCcceEEEeecCCCcccccccccccccccC
Q 022483 114 QYEIREVESYFIAETTMPGRTGFDLNGASRSFNVLAEYLFGKNTKRETMEMTTPVITRKTQSDGEKMEMTTPVISKKLED 193 (296)
Q Consensus 114 ~yEiR~Y~~~~wasT~v~g~s~~~~~a~~~gF~~L~~YI~G~N~~~~kI~MTaPV~t~~~~~~geki~mT~Pv~~~~~~~ 193 (296)
+..+..+++..++.....+. ....-...+..|.++.+-++. +. -.|........ ++..+
T Consensus 4 e~~~~~~~~~~v~~ir~~~~---~~~~~~~~~~el~~~~~~~~~----~~-~~~~~~~~~~~---------~~~~~---- 62 (153)
T COG4978 4 EVVIKKLEEIKVVGIRFTGI---PERLIEQVYSELCNFLKSNGI----IP-IGPYGATIFHE---------PLKEE---- 62 (153)
T ss_pred ccEEEeecceeEEEEEEecC---cHHHHHHHHHHHHHHHhhcCc----cc-cCCceEEEEee---------eeccc----
Confidence 34566778888877766553 223456789999999854431 11 12332222110 11100
Q ss_pred CCeEEEEEEeecCCCCCCCCCCCCCeEEEEecCeEEEEEEeCCcCChHHHHHHHHHHHHHHhcCCCcceecCCcEEEEEe
Q 022483 194 QDKWQMSFVMPSKYGANLPLPKDPSVRIKEVPKKVVAVVAFSGFVTDEDVKRRELKLRDALKGDRQFRVKEGASVEVAQY 273 (296)
Q Consensus 194 ~~~~tmsF~lP~~~q~~pP~P~d~~V~I~~~P~~~vaV~~F~G~~t~~~v~~~~~~L~~~L~~~g~~~v~~~~~~~~A~Y 273 (296)
+-..-+++++=...+ .|.++.+...|..+++...|.|... .+.+.-++|..++.++|+. + .+. ...-|
T Consensus 63 ~~~~~~s~~i~~~~~------~~~~~~~~~~P~g~~a~~~~~G~~~--~~~~~y~rli~~iee~g~~-i--~g~-~~E~y 130 (153)
T COG4978 63 DVDIEVSIPISGEVE------GDIDIKIKTLPKGKYACIIHKGSYE--EVEQAYKRLIEYIEENGLE-I--IGP-SREVY 130 (153)
T ss_pred ccccceeEEEEEecC------CCCcceeEEccCceEEEEEEEcCcc--cHHHHHHHHHHHHHHhCCc-c--cCc-eEEEE
Confidence 002234444332221 7789999999999999999999654 4677888999999999973 3 232 23333
Q ss_pred -CCCCCC--CCCCceeEEEEee
Q 022483 274 -NPPFTL--PFTRRNEIALEVE 292 (296)
Q Consensus 274 -DpP~t~--p~~RrNEVwi~v~ 292 (296)
.+|.+. +-.=.-||+|.++
T Consensus 131 ~~d~~~~~~~~e~~tei~i~v~ 152 (153)
T COG4978 131 LIDPATEVNPEEYLTEIQIPVK 152 (153)
T ss_pred ecCCccccChhHeEEEEEEEee
Confidence 445421 1233457777664
No 11
>COG3708 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=52.08 E-value=1.2e+02 Score=26.38 Aligned_cols=70 Identities=17% Similarity=0.289 Sum_probs=48.0
Q ss_pred CeEEEEecCeEEEEEEeCCcCChHHHHHHHHHHHHH-HhcCCCcceecCCcEEEEEeCC--CCCCCCCCceeEEEEeecc
Q 022483 218 SVRIKEVPKKVVAVVAFSGFVTDEDVKRRELKLRDA-LKGDRQFRVKEGASVEVAQYNP--PFTLPFTRRNEIALEVERK 294 (296)
Q Consensus 218 ~V~I~~~P~~~vaV~~F~G~~t~~~v~~~~~~L~~~-L~~~g~~~v~~~~~~~~A~YDp--P~t~p~~RrNEVwi~v~~~ 294 (296)
.....++|+.+++|-...|-..+ +++--..+..+ +...+.. ...+. .+=.||. |... +-.=||||+|+.+
T Consensus 85 ~~~~i~iPa~~YavFt~~G~~~~--i~etw~~I~~~~~~~~~~~--~~~~~-~fE~Yd~~~~~~~--~~~veIyIpV~kk 157 (157)
T COG3708 85 GMEVIEIPASTYAVFTHKGPIEE--IQETWQEIWKEWFPSSGYR--HAEGP-EFEVYDERDPDSG--NGKVEIYIPVKKK 157 (157)
T ss_pred CceEEEeccceEEEEEecCCHHH--HHHHHHHHHHhhccccccc--ccCCC-ceEEecCCCCCCC--CceEEEEEEEecC
Confidence 34567899999999999997766 55555555554 6777652 12333 5677865 3443 6788999999753
No 12
>PRK15121 right oriC-binding transcriptional activator; Provisional
Probab=51.17 E-value=50 Score=30.73 Aligned_cols=88 Identities=10% Similarity=0.137 Sum_probs=51.2
Q ss_pred eEEEEEEeecCCCCC-CCCCCCCCeEEEEecCeEEEEEEeCCcCChHHHHHHHHHH-HHHHhcCCCcceecCCcEEEEEe
Q 022483 196 KWQMSFVMPSKYGAN-LPLPKDPSVRIKEVPKKVVAVVAFSGFVTDEDVKRRELKL-RDALKGDRQFRVKEGASVEVAQY 273 (296)
Q Consensus 196 ~~tmsF~lP~~~q~~-pP~P~d~~V~I~~~P~~~vaV~~F~G~~t~~~v~~~~~~L-~~~L~~~g~~~v~~~~~~~~A~Y 273 (296)
.+..+.-++.....+ .| +....++|+.++||.+|.|-..+ +.+-...+ .+||-+.|.. ..+. +-+-.|
T Consensus 195 ~~~y~i~v~~~~~~~~~~-----~~~~~~Ip~G~YAvF~~~G~~~~--l~~~~~~Iy~~WLP~sg~~-~~~~--p~~e~y 264 (289)
T PRK15121 195 EVFYTTALEPDQADGYVQ-----TGHPVMLQGGEYVMFTYEGLGTG--LQEFILTVYGTCMPMLNLT-RRKG--QDIERY 264 (289)
T ss_pred EEEEEEeeccccccccCC-----CCceEeeCCCCEEEEEEeCCHHH--HHHHHHHHHHHHCCCCCcc-ccCC--CCEEEE
Confidence 566665555433221 12 12567889999999999997633 55555555 5799888853 2222 233344
Q ss_pred C----CCC-CCCCCCceeEEEEeec
Q 022483 274 N----PPF-TLPFTRRNEIALEVER 293 (296)
Q Consensus 274 D----pP~-t~p~~RrNEVwi~v~~ 293 (296)
. .|. ..+-.-.-||||+|+.
T Consensus 265 ~~~~~~~~~~~~~~~~~ei~iPi~~ 289 (289)
T PRK15121 265 YPAEDAKAGDRPINLRCEYLIPIRR 289 (289)
T ss_pred ecccCccccCCCceEEEEEEEEecC
Confidence 2 333 2211233499999874
No 13
>COG4978 Transcriptional regulator, effector-binding domain/component [Transcription / Signal transduction mechanisms]
Probab=42.91 E-value=2e+02 Score=25.00 Aligned_cols=42 Identities=21% Similarity=0.269 Sum_probs=38.2
Q ss_pred CCeEEEEecCeEEEEEEeCCcCChHHHHHHHHHHHHHHhcCCC
Q 022483 217 PSVRIKEVPKKVVAVVAFSGFVTDEDVKRRELKLRDALKGDRQ 259 (296)
Q Consensus 217 ~~V~I~~~P~~~vaV~~F~G~~t~~~v~~~~~~L~~~L~~~g~ 259 (296)
..|.+.+++++.|+.+++-|- .+..+.+-..+|.+.+...|.
T Consensus 3 ~e~~~~~~~~~~v~~ir~~~~-~~~~~~~~~~el~~~~~~~~~ 44 (153)
T COG4978 3 VEVVIKKLEEIKVVGIRFTGI-PERLIEQVYSELCNFLKSNGI 44 (153)
T ss_pred cccEEEeecceeEEEEEEecC-cHHHHHHHHHHHHHHHhhcCc
Confidence 468899999999999999998 788899999999999999985
No 14
>PF05924 SAMP: SAMP Motif; InterPro: IPR009224 This short region is found repeated in the mid region of the adenomatous polyposis proteins (APCs). This motif binds axin [].; GO: 0008013 beta-catenin binding, 0016055 Wnt receptor signaling pathway; PDB: 1EMU_B 2RQU_B.
Probab=41.34 E-value=17 Score=21.38 Aligned_cols=15 Identities=27% Similarity=0.392 Sum_probs=10.4
Q ss_pred HHHHHHhhhhccccc
Q 022483 72 DLATETAKYVFPKRF 86 (296)
Q Consensus 72 ~~~~~~~~~~~~~~~ 86 (296)
|++.+|+..|+|++.
T Consensus 4 eiL~~CI~sAmPk~~ 18 (20)
T PF05924_consen 4 EILQECIGSAMPKRR 18 (20)
T ss_dssp HHHHHHHHCTS----
T ss_pred HHHHHHHHHhccccc
Confidence 789999999999886
No 15
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=27.24 E-value=42 Score=29.88 Aligned_cols=45 Identities=20% Similarity=0.313 Sum_probs=26.7
Q ss_pred CCeeEEEEEcCCCCccChhhhhHHH-HHHHHhhccCCC-CCcccCCCcceEE
Q 022483 121 ESYFIAETTMPGRTGFDLNGASRSF-NVLAEYLFGKNT-KRETMEMTTPVIT 170 (296)
Q Consensus 121 ~~~~wasT~v~g~s~~~~~a~~~gF-~~L~~YI~G~N~-~~~kI~MTaPV~t 170 (296)
.+....+||+.| ++++..|| -++..++..... .-..+.|+.|+.-
T Consensus 114 ~~~vv~stTi~G-----YEGtGRgF~lkf~~~L~~~~~~~~~~~~L~~PIR~ 160 (177)
T PF05127_consen 114 FPRVVFSTTIHG-----YEGTGRGFSLKFLKQLKKHRPRNWRELELSEPIRY 160 (177)
T ss_dssp SSEEEEEEEBSS-----TTBB-HHHHHHHHCT----ST-TEEEEE--S-SSS
T ss_pred CCEEEEEeeccc-----cccCCceeeeehhhhccccCCCccEEEEcCCCccC
Confidence 345566788877 46788999 889999976654 4577888888753
No 16
>PHA00159 endonuclease I
Probab=20.17 E-value=1.3e+02 Score=26.14 Aligned_cols=46 Identities=17% Similarity=0.070 Sum_probs=29.0
Q ss_pred HHHHHHhcCCCcceecCCcEEEE--EeCCCCCCCCCCceeEEEEeecc
Q 022483 249 KLRDALKGDRQFRVKEGASVEVA--QYNPPFTLPFTRRNEIALEVERK 294 (296)
Q Consensus 249 ~L~~~L~~~g~~~v~~~~~~~~A--~YDpP~t~p~~RrNEVwi~v~~~ 294 (296)
+-.+.|+..|...-.+.-.+... .=+.-++|.|.+.|.|++++++.
T Consensus 22 k~ak~Le~~gv~~~yE~~ki~y~~pA~~~~YTPDF~LpnGiiiEvKG~ 69 (148)
T PHA00159 22 KVSKQLEKKGVKFDYELWKIPYVIPASDHKYTPDFLLPNGIIIETKGL 69 (148)
T ss_pred HHHHHHHhcCCCeEeeeeeeeeeccCCCCeeCCceecCCCCEEEeccc
Confidence 45567777775211122222222 23577888899999999999864
Done!