Query 022483
Match_columns 296
No_of_seqs 132 out of 482
Neff 5.5
Searched_HMMs 29240
Date Mon Mar 25 06:12:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022483.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022483hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3r8j_A Heme-binding protein 2; 100.0 3.9E-53 1.3E-57 381.1 18.8 179 98-294 20-202 (212)
2 2gov_A P22HBP, heme-binding pr 100.0 2.6E-53 8.9E-58 377.4 17.4 177 98-292 15-195 (195)
3 4b0y_A Heme-binding protein 2; 100.0 5E-53 1.7E-57 383.9 19.4 182 95-294 35-221 (227)
4 1jyh_A DNA gyrase inhibitory p 98.3 1.3E-05 4.4E-10 63.5 13.5 153 114-295 2-156 (157)
5 3e0h_A Uncharacterized protein 98.2 4.6E-05 1.6E-09 62.6 15.5 148 114-293 8-157 (158)
6 1r8e_A Multidrug-efflux transp 96.7 0.056 1.9E-06 48.2 15.6 152 112-292 121-277 (278)
7 3b49_A LIN2189 protein; BIG 86 96.4 0.094 3.2E-06 45.4 14.3 165 114-292 24-211 (211)
8 3lur_A Putative bacterial tran 92.3 1 3.5E-05 36.6 10.0 73 217-293 85-158 (158)
9 1d5y_A ROB transcription facto 90.4 1.1 3.6E-05 39.7 8.7 73 217-294 210-288 (292)
10 3gk6_A Integron cassette prote 86.9 8.4 0.00029 31.9 11.5 66 217-292 103-170 (170)
11 3e0h_A Uncharacterized protein 82.9 6.1 0.00021 31.4 8.5 70 218-293 8-79 (158)
12 3b49_A LIN2189 protein; BIG 86 74.4 13 0.00045 31.6 8.5 43 217-259 23-71 (211)
13 1jyh_A DNA gyrase inhibitory p 69.6 27 0.00093 26.3 8.6 70 218-292 2-72 (157)
14 1r8e_A Multidrug-efflux transp 58.6 13 0.00045 32.6 5.3 73 216-293 121-196 (278)
15 1d5y_A ROB transcription facto 24.9 2.9E+02 0.0098 23.6 8.4 58 217-277 124-185 (292)
16 2dix_A Interferon-inducible do 23.5 1.9E+02 0.0065 21.0 5.9 63 91-157 14-83 (84)
17 2q3l_A Uncharacterized protein 22.7 1.2E+02 0.0042 23.6 5.0 42 218-259 10-51 (126)
18 2ook_A Hypothetical protein; s 20.9 1.9E+02 0.0066 22.5 5.9 41 219-259 11-53 (127)
No 1
>3r8j_A Heme-binding protein 2; HEBP family, SOUL protein, apoptosis; 1.60A {Homo sapiens} PDB: 3r8k_A 2yc9_A 4ayz_A 4ayz_B 3r85_E
Probab=100.00 E-value=3.9e-53 Score=381.06 Aligned_cols=179 Identities=26% Similarity=0.385 Sum_probs=160.9
Q ss_pred CCCcCCCCeEEEEe----cCCeEEEEeCCeeEEEEEcCCCCccChhhhhHHHHHHHHhhccCCCCCcccCCCcceEEEee
Q 022483 98 VPDLETVKFKVLSR----RGQYEIREVESYFIAETTMPGRTGFDLNGASRSFNVLAEYLFGKNTKRETMEMTTPVITRKT 173 (296)
Q Consensus 98 ~~~~E~P~Y~Vl~~----~~~yEiR~Y~~~~wasT~v~g~s~~~~~a~~~gF~~L~~YI~G~N~~~~kI~MTaPV~t~~~ 173 (296)
++++|||+|+||++ +++||||+|++++||+|++.+.+. .+|...||++|++||+|+|.++++|+||+||++++.
T Consensus 20 ~~~~E~P~Y~vl~~~~~~~~~yEiR~Y~~~~wast~v~~~~~--~~A~~~gF~~L~~YI~G~N~~~~kI~MTaPV~t~~~ 97 (212)
T 3r8j_A 20 AQAVETPGWKAPEDAGPQPGSYEIRHYGPAKWVSTSVESMDW--DSAIQTGFTKLNSYIQGKNEKEMKIKMTAPVTSYVE 97 (212)
T ss_dssp --CCBCCCEECCSSCCCCCTTCEEEEECCEEEEEEEEEESCH--HHHHHHHHHHHHHHHTTCBTTCCCCCCBSCEEEEEE
T ss_pred cCCCCCCCeEEEEecccCCCCEEEEEcCCceEEEEEEeCCCH--HHHHHHHHHHHHHHhhcCCCCCCccccccCEEEEEe
Confidence 56899999999999 899999999999999999976421 236788999999999999999999999999999987
Q ss_pred cCCCcccccccccccccccCCCeEEEEEEeecCCCCCCCCCCCCCeEEEEecCeEEEEEEeCCcCChHHHHHHHHHHHHH
Q 022483 174 QSDGEKMEMTTPVISKKLEDQDKWQMSFVMPSKYGANLPLPKDPSVRIKEVPKKVVAVVAFSGFVTDEDVKRRELKLRDA 253 (296)
Q Consensus 174 ~~~geki~mT~Pv~~~~~~~~~~~tmsF~lP~~~q~~pP~P~d~~V~I~~~P~~~vaV~~F~G~~t~~~v~~~~~~L~~~ 253 (296)
++++ |. +++.|+|+|+||++||++||+|+|++|+|+++|+++|||++|+|+++++++.+++++|+++
T Consensus 98 p~~~-------~~------~~~~~tvsF~lP~~~q~~pP~P~d~~V~i~~~p~~~vav~~F~G~~~~~~~~~~~~~L~~~ 164 (212)
T 3r8j_A 98 PGSG-------PF------SESTITISLYIPSEQQFDPPRPLESDVFIEDRAEMTVFVRSFDGFSSAQKNQEQLLTLASI 164 (212)
T ss_dssp CTTS-------TT------SCEEEEEEEECCHHHHSSCCCBSSTTEEEEEECCEEEEEEEESSCCCHHHHHHHHHHHHHH
T ss_pred cCCC-------cc------cCceEEEEEEcChHHccCCCCCCCCceEEEEeCCEEEEEEEeCCcCCHHHHHHHHHHHHHH
Confidence 7654 33 3679999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCcceecCCcEEEEEeCCCCCCCCCCceeEEEEeecc
Q 022483 254 LKGDRQFRVKEGASVEVAQYNPPFTLPFTRRNEIALEVERK 294 (296)
Q Consensus 254 L~~~g~~~v~~~~~~~~A~YDpP~t~p~~RrNEVwi~v~~~ 294 (296)
|+++|+. ..++.|++|+||+||++ |+|||||||.++.+
T Consensus 165 L~~~g~~--~~~~~y~~A~Yd~P~t~-~~RrNEVwi~~~~e 202 (212)
T 3r8j_A 165 LREDGKV--FDEKVYYTAGYNSPVKL-LNRNNEVWLIQKNE 202 (212)
T ss_dssp HHHTTCC--BCSSCEEEEESSSSSCC-SSSCEEEEEEBCC-
T ss_pred HHhCCCc--cCCCcEEEEEeCCCCCc-CCceeEEEEEeCCC
Confidence 9999974 25667899999999997 99999999998853
No 2
>2gov_A P22HBP, heme-binding protein 1; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; NMR {Mus musculus} SCOP: d.60.1.4 PDB: 4a1m_A 2hva_A
Probab=100.00 E-value=2.6e-53 Score=377.42 Aligned_cols=177 Identities=28% Similarity=0.395 Sum_probs=159.8
Q ss_pred CCCcCCCCeEEEEecCC----eEEEEeCCeeEEEEEcCCCCccChhhhhHHHHHHHHhhccCCCCCcccCCCcceEEEee
Q 022483 98 VPDLETVKFKVLSRRGQ----YEIREVESYFIAETTMPGRTGFDLNGASRSFNVLAEYLFGKNTKRETMEMTTPVITRKT 173 (296)
Q Consensus 98 ~~~~E~P~Y~Vl~~~~~----yEiR~Y~~~~wasT~v~g~s~~~~~a~~~gF~~L~~YI~G~N~~~~kI~MTaPV~t~~~ 173 (296)
|++.|||+|+||++.++ ||||+|+++.||+|++.+.+. .+|...||++|++||+|+|.++++|+||+||++++.
T Consensus 15 ~~~~E~P~Y~Vl~~~~~~~~~yEiR~Y~~~~wa~t~~~~~~~--~~A~~~gF~~L~~YI~G~N~~~~kI~MTaPV~~~~~ 92 (195)
T 2gov_A 15 FGSVETWPWQVLSTGGKEDVSYEERACEGGKFATVEVTDKPV--DEALREAMPKIMKYVGGTNDKGVGMGMTVPVSFAVF 92 (195)
T ss_dssp CCSCCSCCCEEEEECCCSSSCEEEEECCCCEEEEEEEESSCH--HHHHHHHHHHHHHHHHTCBTTCCCCCCCCCEEEEEE
T ss_pred cCCCCCCCeEEEEecCCCCCcEEEEEeCCeEEEEEEecCCCh--hHHHHHHHHHHHHHhccCCCCCCCcccccCEEEEEc
Confidence 67899999999999887 999999999999999977432 246788999999999999999999999999999876
Q ss_pred cCCCcccccccccccccccCCCeEEEEEEeecCCCCCCCCCCCCCeEEEEecCeEEEEEEeCCcCChHHHHHHHHHHHHH
Q 022483 174 QSDGEKMEMTTPVISKKLEDQDKWQMSFVMPSKYGANLPLPKDPSVRIKEVPKKVVAVVAFSGFVTDEDVKRRELKLRDA 253 (296)
Q Consensus 174 ~~~geki~mT~Pv~~~~~~~~~~~tmsF~lP~~~q~~pP~P~d~~V~I~~~P~~~vaV~~F~G~~t~~~v~~~~~~L~~~ 253 (296)
++++ |. |.+.|+|+|+||++||++||+|+|++|+|+++|+++|||++|+|++++.++.+++++|+++
T Consensus 93 p~~~-------~~------~~~~~tvsF~lP~~~~~~pP~P~d~~V~i~~~p~~~vav~~F~G~~~~~~~~~~~~~L~~~ 159 (195)
T 2gov_A 93 PNED-------GS------LQKKLKVWFRIPNQFQGSPPAPSDESVKIEEREGITVYSTQFGGYAKEADYVAHATQLRTT 159 (195)
T ss_dssp ECTT-------SC------EEEEEEEEECCCHHHHHSCCCBCSSSCEEEECCSCEEEEEEEESCCCHHHHHHHHHHHHHH
T ss_pred CCCC-------CC------cCceEEEEEEcchhcccCCCCCCCCceEEEEeCCeEEEEEEECCccCHHHHHHHHHHHHHH
Confidence 6543 32 3568999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCcceecCCcEEEEEeCCCCCCCCCCceeEEEEee
Q 022483 254 LKGDRQFRVKEGASVEVAQYNPPFTLPFTRRNEIALEVE 292 (296)
Q Consensus 254 L~~~g~~~v~~~~~~~~A~YDpP~t~p~~RrNEVwi~v~ 292 (296)
|+++|+. ..++.|++|+||+||++ ++|||||||..+
T Consensus 160 L~~~g~~--~~~~~~~~a~Yn~P~~~-~~RrNEV~i~~~ 195 (195)
T 2gov_A 160 LEGTPAT--YQGDVYYCAGYDPPMKP-YGRRNEVWLVKA 195 (195)
T ss_dssp TTTSSCC--EEEEEEEEEESSCCSSS-SCCEEEEEEEEC
T ss_pred HHHCCCc--ccCCcEEEEEeCCCCCc-CCceeEEEEEeC
Confidence 9999975 24567899999999998 999999999863
No 3
>4b0y_A Heme-binding protein 2; apoptosis; 3.50A {Homo sapiens}
Probab=100.00 E-value=5e-53 Score=383.86 Aligned_cols=182 Identities=26% Similarity=0.373 Sum_probs=154.7
Q ss_pred hhc-CCCcCCCCeEEEEe----cCCeEEEEeCCeeEEEEEcCCCCccChhhhhHHHHHHHHhhccCCCCCcccCCCcceE
Q 022483 95 LMA-VPDLETVKFKVLSR----RGQYEIREVESYFIAETTMPGRTGFDLNGASRSFNVLAEYLFGKNTKRETMEMTTPVI 169 (296)
Q Consensus 95 ~~~-~~~~E~P~Y~Vl~~----~~~yEiR~Y~~~~wasT~v~g~s~~~~~a~~~gF~~L~~YI~G~N~~~~kI~MTaPV~ 169 (296)
+.+ ++++|||+|+||++ +++||||+|++++||+|++.+.+. .+|...||++|++||+|+|.++++|+||+||+
T Consensus 35 ~~~~~~~~E~P~Y~vl~~~~~~~~~yEiR~Y~~~~wast~v~~~~~--~~A~~~gF~~L~~YI~G~N~~~~kI~MTaPV~ 112 (227)
T 4b0y_A 35 EDAAAQAVETPGWKAPEDAGPQPGSYEIRHYGPAKWVSTSVESMDW--DSAIQTGFTKLNSYIQGKNEKEMKIKMTAPVT 112 (227)
T ss_dssp ------CCBCCCEECCC------CCSEEEEECCEEEEEEEEEESCH--HHHHHHHHHHHHHHHHTCBTTCCCCCCBSCEE
T ss_pred cccccCCCCCCCeEEEEecccCCCCEEEEEcCCceEEEEEEeCCCH--HHHHHHHHHHHHHHhhcCCCCCCccccccCEE
Confidence 444 68999999999999 899999999999999999976421 23678999999999999999999999999999
Q ss_pred EEeecCCCcccccccccccccccCCCeEEEEEEeecCCCCCCCCCCCCCeEEEEecCeEEEEEEeCCcCChHHHHHHHHH
Q 022483 170 TRKTQSDGEKMEMTTPVISKKLEDQDKWQMSFVMPSKYGANLPLPKDPSVRIKEVPKKVVAVVAFSGFVTDEDVKRRELK 249 (296)
Q Consensus 170 t~~~~~~geki~mT~Pv~~~~~~~~~~~tmsF~lP~~~q~~pP~P~d~~V~I~~~P~~~vaV~~F~G~~t~~~v~~~~~~ 249 (296)
+++.++++ |+ +++.|+|+|+||++||++||+|+|++|+|+++|+++|||++|+|+++++++.+++++
T Consensus 113 t~~~p~~~-------~~------~~~~~tvsF~lP~~~q~~pP~P~D~~V~i~~~p~~~vaVr~FsG~~~~~~~~~~~~~ 179 (227)
T 4b0y_A 113 SYVEPGSG-------PF------SESTITISLYIPSEQQFDPPRPLESDVFIEDRAEMTVFVRSFDGFSSAQKNQEQLLT 179 (227)
T ss_dssp EEEECCC---------C------CCEEEEEEEECCGGGSSSCCCBSSSSEEEEEECCEEEEEEEESSCCCHHHHHHHHHH
T ss_pred EEEecCCC-------cc------cCceEEEEEEcChhhccCCCCCCCCceEEEEeCCEEEEEEEecCcCCHHHHHHHHHH
Confidence 99877654 33 367999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCcceecCCcEEEEEeCCCCCCCCCCceeEEEEeecc
Q 022483 250 LRDALKGDRQFRVKEGASVEVAQYNPPFTLPFTRRNEIALEVERK 294 (296)
Q Consensus 250 L~~~L~~~g~~~v~~~~~~~~A~YDpP~t~p~~RrNEVwi~v~~~ 294 (296)
|+++|+++|+. ..++.|++|+||+||++ |+|||||||.++.+
T Consensus 180 L~~~L~~~g~~--~~~~~y~~A~Yd~P~t~-~~RrNEVwi~~~~e 221 (227)
T 4b0y_A 180 LASILREDGKV--FDEKVYYTAGYNSPVKL-LNRNNEVWLIQKNE 221 (227)
T ss_dssp HHHHHHHHTCC--BCSSCEEEEECC---CC-CSSCEEEEEEBC--
T ss_pred HHHHHHhCCCc--cCCCcEEEEEeCCCCCc-CCceeEEEEEECCC
Confidence 99999999964 25667899999999997 99999999998754
No 4
>1jyh_A DNA gyrase inhibitory protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; HET: DNA; 1.80A {Escherichia coli} SCOP: d.60.1.3
Probab=98.32 E-value=1.3e-05 Score=63.49 Aligned_cols=153 Identities=16% Similarity=0.135 Sum_probs=98.9
Q ss_pred CeEEEEeCCeeEEEEEcCCCCccChhhhhHHHHHHHHhhccCCCCCcccCCCcceEEEeecCCCcccccccccccccccC
Q 022483 114 QYEIREVESYFIAETTMPGRTGFDLNGASRSFNVLAEYLFGKNTKRETMEMTTPVITRKTQSDGEKMEMTTPVISKKLED 193 (296)
Q Consensus 114 ~yEiR~Y~~~~wasT~v~g~s~~~~~a~~~gF~~L~~YI~G~N~~~~kI~MTaPV~t~~~~~~geki~mT~Pv~~~~~~~ 193 (296)
+++|+.+++...+.....|.. + +....+|.+|++++...|-.. .+.+.... .+ |..+. ..
T Consensus 2 ~~~i~~~~~~~v~~~~~~g~~--~-~~i~~~~~~l~~~~~~~~~~~------~~~~gi~~-~~--------~~~~~--~~ 61 (157)
T 1jyh_A 2 NYEIKQEEKRTVAGFHLVGPW--E-QTVKKGFEQLMMWVDSKNIVP------KEWVAVYY-DN--------PDETP--AE 61 (157)
T ss_dssp CCEEEEECCEEEEEEEEESCH--H-HHHHHHHHHHHHHHHHTTCCC------SEEEEEEC-SC--------TTTSC--GG
T ss_pred CCEEEEeCCeEEEEEEEECCc--h-hhHHHHHHHHHHHHHHcCCCC------CcEEEEEC-CC--------CCCCC--HH
Confidence 478999999999988776521 1 234578999999997665321 24443221 11 11110 01
Q ss_pred CCeEEEEEEeecCCCCCCCCCCCCCeEEEEecCeEEEEEEeCCcCChHHHHHHHHHHH-HHHhcCCCcceecCCcEEEEE
Q 022483 194 QDKWQMSFVMPSKYGANLPLPKDPSVRIKEVPKKVVAVVAFSGFVTDEDVKRRELKLR-DALKGDRQFRVKEGASVEVAQ 272 (296)
Q Consensus 194 ~~~~tmsF~lP~~~q~~pP~P~d~~V~I~~~P~~~vaV~~F~G~~t~~~v~~~~~~L~-~~L~~~g~~~v~~~~~~~~A~ 272 (296)
.-.+.+++.+|.... +| |.+..+.+.++|+.++||..|.|... .+.+.-.+|. +||.++|+. ..+.+.+-.
T Consensus 62 ~~~~~~~~~v~~~~~--~~-~~~~~~~~~~ip~g~ya~~~~~G~~~--~~~~~~~~l~~~wl~~~g~~---~~~~~~~E~ 133 (157)
T 1jyh_A 62 KLRCDTVVTVPGYFT--LP-ENSEGVILTEITGGQYAVAVARVVGD--DFAKPWYQFFNSLLQDSAYE---MLPKPCFEV 133 (157)
T ss_dssp GCEEEEEEEECTTCC--CC-SSCTTCEEEEECCEEEEEEEEEECSS--CCHHHHHHHHHHHTTCSSEE---ECSSCEEEE
T ss_pred HheEEEEEEecCccc--cC-CCCCCeEEEEeCCCcEEEEEEEeCHH--HHHHHHHHHHHHhhcccCCc---cCCCceEEE
Confidence 236778888886443 22 44678999999999999999999763 3667777775 999999852 233345666
Q ss_pred eC-CCCCCCCCCceeEEEEeeccC
Q 022483 273 YN-PPFTLPFTRRNEIALEVERKE 295 (296)
Q Consensus 273 YD-pP~t~p~~RrNEVwi~v~~~~ 295 (296)
|. .|.. +-..+.||||+|+.++
T Consensus 134 Y~~~~~~-~~~~~tei~ipi~~~~ 156 (157)
T 1jyh_A 134 YLNNGAE-DGYWDIEMYVAVQPKH 156 (157)
T ss_dssp ECSCHHH-HSSEEEEEEEEEEEC-
T ss_pred ecCCCCC-cccEEEEEEEEeeeCC
Confidence 73 3333 3456789999998764
No 5
>3e0h_A Uncharacterized protein; chlorobium tepidum, structural genomics, PSI-2, protein structure initiative; 1.81A {Chlorobaculum tepidum} PDB: 2kcu_A
Probab=98.24 E-value=4.6e-05 Score=62.59 Aligned_cols=148 Identities=11% Similarity=0.083 Sum_probs=98.4
Q ss_pred CeEEEEeCCeeEEEEEcCCCCccChh-hhhHHHHHHHHhhccCCCCCcccCCCcceEEEeecCCCccccccccccccccc
Q 022483 114 QYEIREVESYFIAETTMPGRTGFDLN-GASRSFNVLAEYLFGKNTKRETMEMTTPVITRKTQSDGEKMEMTTPVISKKLE 192 (296)
Q Consensus 114 ~yEiR~Y~~~~wasT~v~g~s~~~~~-a~~~gF~~L~~YI~G~N~~~~kI~MTaPV~t~~~~~~geki~mT~Pv~~~~~~ 192 (296)
+++|+..++...|.....+.. .+.. ...+.|.+|+.++..+|- ..+.|.+......+.
T Consensus 8 ~v~I~~~p~~~va~ir~~~~~-~~~~~~i~~~~~~l~~~~~~~~l-----~~~g~~~~iy~d~~~--------------- 66 (158)
T 3e0h_A 8 VCELKELAPVPALLIRTQTTM-SELGSLFEAGYHDILQLLAGQGK-----SPSGPPFARYFGMSA--------------- 66 (158)
T ss_dssp CEEEEEECCCEEEEEEEEECH-HHHHHHHHHHHHHHHHHHHHTTC-----CCSSCCEEEEESCTT---------------
T ss_pred ccEEEeeCCceEEEEEeecCH-HHHHHHHHHHHHHHHHHHHHcCC-----CCCCCeEEEEecCCC---------------
Confidence 678999999999987766531 1111 123678999999876552 335555544432110
Q ss_pred CCCeEEEEEEeecCCCCCCCCCCCCCeEEEEecCeEEEEEEeCCcCChHHHHHHHHHHHHHHhcCCCcceecCCcEEEEE
Q 022483 193 DQDKWQMSFVMPSKYGANLPLPKDPSVRIKEVPKKVVAVVAFSGFVTDEDVKRRELKLRDALKGDRQFRVKEGASVEVAQ 272 (296)
Q Consensus 193 ~~~~~tmsF~lP~~~q~~pP~P~d~~V~I~~~P~~~vaV~~F~G~~t~~~v~~~~~~L~~~L~~~g~~~v~~~~~~~~A~ 272 (296)
..-.+.+++-++.. .+.+.+|.+.++|+.++|+..+.|-..+ +.+.-.+|.+||.++|+. . .+..+-..
T Consensus 67 ~~~~~~~~~~v~~~------~~~~~~~~~~~ip~g~~a~~~~~G~~~~--i~~~~~~l~~wl~~~g~~-~--~~~~~E~Y 135 (158)
T 3e0h_A 67 GTFEVEFGFPVEGG------VEGSGRVVTGLTPSGKAASSLYIGPYGE--IEAVYDALMKWVDDNGFD-L--SGEAYEIY 135 (158)
T ss_dssp SCEEEEEEEECCSC------CCCBTTBEEEECCCEEEEEEEEESCGGG--THHHHHHHHHHHHHTTCC-E--EEEEEEEE
T ss_pred cceEEEEEEEeCCC------CCCCCceEEEEeCCEEEEEEEEEcCccc--HHHHHHHHHHHHHHCCCC-c--CCCEEEEE
Confidence 12245555555432 2234689999999999999999997653 788888999999999964 2 23344444
Q ss_pred eCCCCC-CCCCCceeEEEEeec
Q 022483 273 YNPPFT-LPFTRRNEIALEVER 293 (296)
Q Consensus 273 YDpP~t-~p~~RrNEVwi~v~~ 293 (296)
+|.|.. .+-..+.||||+|+.
T Consensus 136 ~~~p~~~~~~~~~tei~ipv~~ 157 (158)
T 3e0h_A 136 LDNPAETAPDQLRTRVSLMLHE 157 (158)
T ss_dssp CSCTTSSCGGGCEEEEEEEECC
T ss_pred eCCCCCCCHHHhEEEEEEEEcC
Confidence 577774 445678999999974
No 6
>1r8e_A Multidrug-efflux transporter regulator; protein-DNA complex, MERR-family transcription activator, MU binding protein; HET: P4P; 2.40A {Bacillus subtilis} SCOP: a.6.1.3 d.60.1.1 PDB: 1exi_A* 1exj_A* 3iao_A 3q5p_A* 3d71_A* 3q3d_A* 3q1m_A* 3q2y_A* 3q5r_A* 3q5s_A* 3d70_A 3d6z_A* 3d6y_A* 1bow_A 2bow_A*
Probab=96.72 E-value=0.056 Score=48.25 Aligned_cols=152 Identities=14% Similarity=0.064 Sum_probs=93.1
Q ss_pred cCCeEEEEeCCeeEEEEEc-CCCCccChhhh-hHHHHHHHHhhccCCCCCcccCCCcceEEEeecCCCcccccccccccc
Q 022483 112 RGQYEIREVESYFIAETTM-PGRTGFDLNGA-SRSFNVLAEYLFGKNTKRETMEMTTPVITRKTQSDGEKMEMTTPVISK 189 (296)
Q Consensus 112 ~~~yEiR~Y~~~~wasT~v-~g~s~~~~~a~-~~gF~~L~~YI~G~N~~~~kI~MTaPV~t~~~~~~geki~mT~Pv~~~ 189 (296)
..+++|+..++..++.... .+. .+.. ...|.+|..++...+ +..+.|+.......+ ++ +
T Consensus 121 ~~~v~I~~~p~~~v~~~~~~~~~----~~~i~~~~~~~l~~~~~~~~-----l~~~~~~g~~~~~~~-----~~-~---- 181 (278)
T 1r8e_A 121 LGEVFVLDEEEIRIIQTEAEGIG----PENVLNASYSKLKKFIESAD-----GFTNNSYGATFSFQP-----YT-S---- 181 (278)
T ss_dssp TTCCEEEEECCEEEEEEECTTCC----TTTCCGGGGHHHHHHHHHHH-----SSCCCCEEEEECCCC-----CS-C----
T ss_pred CCceEEEEcCCeEEEEeecCCCC----hHhHHHHHHHHHHHHHHHcC-----CcccCceEEEEEhHH-----hh-c----
Confidence 3468999999998887765 331 1223 467899999995543 334557654433211 00 0
Q ss_pred cccCCCeE-EEEEEeecCCCCCCCCCCCCCeEEEEecCeEEEEEEeCCcCChHHHHHHHHHHHHHHhcCCCcceecCCcE
Q 022483 190 KLEDQDKW-QMSFVMPSKYGANLPLPKDPSVRIKEVPKKVVAVVAFSGFVTDEDVKRRELKLRDALKGDRQFRVKEGASV 268 (296)
Q Consensus 190 ~~~~~~~~-tmsF~lP~~~q~~pP~P~d~~V~I~~~P~~~vaV~~F~G~~t~~~v~~~~~~L~~~L~~~g~~~v~~~~~~ 268 (296)
. .-..| .+++.++... .|.|.+..|.+..+|+..+|+..+.|.. +.+.+....|.+||.++|+. + .+..
T Consensus 182 ~--~~~~~~~~~v~v~~~~---~~l~~~~~~~~~~lp~g~ya~~~~~G~y--~~i~~~~~~l~~wl~~~g~~-~--~g~~ 251 (278)
T 1r8e_A 182 I--DEMTYRHIFTPVLTNK---QISSITPDMEITTIPKGRYACIAYNFSP--EHYFLNLQKLIKYIADRQLT-V--VSDV 251 (278)
T ss_dssp G--GGCCCSEEEEECCCCS---CCSSCCTTSEEEEECSEEEEEEEEECCH--HHHHHHHHHHHHHHHHTTCC-E--EEEE
T ss_pred C--CCcceeEEEEEecCcc---ccccccCCceEeecCCceEEEEEEEcch--hhHHHHHHHHHHHHHHcCCc-c--CCCe
Confidence 0 01112 2344443221 1223456799999999999999999955 45677788899999999963 2 2334
Q ss_pred EEEEeCCCCCC--CCCCceeEEEEee
Q 022483 269 EVAQYNPPFTL--PFTRRNEIALEVE 292 (296)
Q Consensus 269 ~~A~YDpP~t~--p~~RrNEVwi~v~ 292 (296)
+--.++.|+.. +-.-.-||||+|+
T Consensus 252 ~E~y~~~~~~~~~~~~~~teI~iPv~ 277 (278)
T 1r8e_A 252 YELIIPIHYSPKKQEEYRVEMKIRIA 277 (278)
T ss_dssp EEEEEESCCCSSSCCCEEEEEEEEEC
T ss_pred EEEEeecccccCChhheEEEEEEEec
Confidence 44444566542 2234679999986
No 7
>3b49_A LIN2189 protein; BIG 860.1, structural genomics, MCSG, SAD, PSI-2, protein ST initiative, midwest center for structural genomics; HET: MSE; 1.60A {Listeria innocua CLIP11262}
Probab=96.36 E-value=0.094 Score=45.36 Aligned_cols=165 Identities=10% Similarity=0.019 Sum_probs=97.0
Q ss_pred CeEEEEeCCeeEEEEEcCCCCccChhhhhHHHHHHHHhh------ccCCCCCcc-cCCC-cceEEEeecCCCcccccccc
Q 022483 114 QYEIREVESYFIAETTMPGRTGFDLNGASRSFNVLAEYL------FGKNTKRET-MEMT-TPVITRKTQSDGEKMEMTTP 185 (296)
Q Consensus 114 ~yEiR~Y~~~~wasT~v~g~s~~~~~a~~~gF~~L~~YI------~G~N~~~~k-I~MT-aPV~t~~~~~~geki~mT~P 185 (296)
+++|+.-++...+.....|... + ....++|.+|+..+ ..++-.... -..+ .|........+ |
T Consensus 24 ~v~i~~~p~~~v~~i~~~g~~~-~-~~~~~~~~~L~~~~~~ik~~~~~~~~~~g~~~y~v~~~~gi~~~d~--------~ 93 (211)
T 3b49_A 24 KPERIFVPEMNFLMVDGKGDPD-G-EEYQKAVQSLYAIAYTIKMSKMGETRLDGYSDFVVPPLEGFWWSEG--------K 93 (211)
T ss_dssp SCEEEEEEEEEEEEEEEESCTT-S-HHHHHHHHHHHHHHHHHHHGGGSCCTTTTSCCBCCCCCEEEEEESS--------S
T ss_pred CcEEEEECCeeEEEEEeecCCC-H-HHHHHHHHHHHHHHHHHHHHHhcCCCCCCccceeccceeEEeecCC--------c
Confidence 5788888999898877666311 1 13457899999987 433321111 1111 24333222111 1
Q ss_pred cccccccCCCeEEEEEEeecCCCC------------CCCCCCCCCeEEEEecCeEEEEEEeCCcCChHHHHHHHHHHHHH
Q 022483 186 VISKKLEDQDKWQMSFVMPSKYGA------------NLPLPKDPSVRIKEVPKKVVAVVAFSGFVTDEDVKRRELKLRDA 253 (296)
Q Consensus 186 v~~~~~~~~~~~tmsF~lP~~~q~------------~pP~P~d~~V~I~~~P~~~vaV~~F~G~~t~~~v~~~~~~L~~~ 253 (296)
...+ ...+-.|.+++-+|...+. ..|.+....|.+.++|+..+++..+.|-.. .+.+-..+|.+|
T Consensus 94 ~~~~-~~~~~~~~~~i~vp~~v~~~~~~~a~~~~~~~~~~~~~~~v~~~~ip~g~~a~~~h~G~y~--~~~~~~~~l~~w 170 (211)
T 3b49_A 94 FDLK-DRDAWLWTSILRQPDFVTEEVLEWAKEVARKKKPDVDTSRVKLVRFEEGECVQMMHVGPFS--EEVHTVAEMHQF 170 (211)
T ss_dssp CCTT-CGGGEEEEEEEEECTTCCHHHHHHHHHHHHHHCTTSCCTTCEEEEEEEEEEEEEEEESCGG--GHHHHHHHHHHH
T ss_pred cccC-chhheEEEEEEEcCCcccHHHHHHHHHHHhccCCCCCcccceEEEeCCceEEEEEEEcchh--hHHHHHHHHHHH
Confidence 1000 0112367778877864321 023334467999999999999999999765 366777888899
Q ss_pred HhcCCCcceec--CCcEEEEEeCCCCCC-CCCCceeEEEEee
Q 022483 254 LKGDRQFRVKE--GASVEVAQYNPPFTL-PFTRRNEIALEVE 292 (296)
Q Consensus 254 L~~~g~~~v~~--~~~~~~A~YDpP~t~-p~~RrNEVwi~v~ 292 (296)
|.++|+.. .. ++..+--.+|.|... +-.-+-||+++|+
T Consensus 171 l~~~g~~~-~~~~~~~~~EiY~~dp~~~~~~~~~tei~ipV~ 211 (211)
T 3b49_A 171 METEGLRN-DTGAIRKHHEIYLSDPRKANPEKMKTILRLPVS 211 (211)
T ss_dssp HHHHTCCB-CBTTTBCEEEEECSCTTTSCGGGCEEEEEEEBC
T ss_pred HHHCCCcc-ccCCCCcEEEEEeCCCCCCChHHeEEEEEEEeC
Confidence 99999721 11 143434444667543 3334679999875
No 8
>3lur_A Putative bacterial transcription regulation prote; structural genomics, joint center for structural genomics; HET: MSE PG4; 1.81A {Staphylococcus aureus}
Probab=92.34 E-value=1 Score=36.60 Aligned_cols=73 Identities=12% Similarity=0.023 Sum_probs=50.9
Q ss_pred CCeEEEEecCeEEEEEEeCCcCChHHHHHHHHHHH-HHHhcCCCcceecCCcEEEEEeCCCCCCCCCCceeEEEEeec
Q 022483 217 PSVRIKEVPKKVVAVVAFSGFVTDEDVKRRELKLR-DALKGDRQFRVKEGASVEVAQYNPPFTLPFTRRNEIALEVER 293 (296)
Q Consensus 217 ~~V~I~~~P~~~vaV~~F~G~~t~~~v~~~~~~L~-~~L~~~g~~~v~~~~~~~~A~YDpP~t~p~~RrNEVwi~v~~ 293 (296)
..+...++|+.++||.++.|-..+ .+.+--..+. +||-+.|.. ..+.+.+-.|+..-..+-.-.-||||+|++
T Consensus 85 ~~~~~~~ip~g~Yavf~~~G~~~~-~i~~~~~~i~~~wlp~sgy~---~~~~p~fE~Y~~~~~~~~~~~~ei~iPI~~ 158 (158)
T 3lur_A 85 AKYDVITLASSKYMVFEAQGAVPK-AVQQKMEEVHHYIHQYQANT---VKSAPFFELYQDGDTTSEKYITEIWMPVKG 158 (158)
T ss_dssp GGSEEEEECCEEEEEEEEESSTTH-HHHHHHHHHHHHHHHHCTTT---BCSSCEEEEECSSCTTSTTCEEEEEEEECC
T ss_pred CCcEEEEECCceEEEEEEecChHH-HHHHHHHHHHHhhcccCCCe---eCCCccEEEECCCCCCCcceEEEEEEEEcC
Confidence 468889999999999999996544 4555555554 689888863 233456667866433223456799999974
No 9
>1d5y_A ROB transcription factor; protein-DNA complex, DNA, transcription/DNA complex; HET: DNA; 2.70A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 d.60.1.2
Probab=90.37 E-value=1.1 Score=39.70 Aligned_cols=73 Identities=11% Similarity=0.093 Sum_probs=49.4
Q ss_pred CCeEEEEecCeEEEEEEeCCcCChHHHHHHHHHHH-HHHhcCCCcceecCCcEEEEEeC----CCCCCC-CCCceeEEEE
Q 022483 217 PSVRIKEVPKKVVAVVAFSGFVTDEDVKRRELKLR-DALKGDRQFRVKEGASVEVAQYN----PPFTLP-FTRRNEIALE 290 (296)
Q Consensus 217 ~~V~I~~~P~~~vaV~~F~G~~t~~~v~~~~~~L~-~~L~~~g~~~v~~~~~~~~A~YD----pP~t~p-~~RrNEVwi~ 290 (296)
..+...++|+.++||..+.|. .+.+.+--..|. +||.+.|.. . .+.+.+-.|. ++...+ -.-.-||||+
T Consensus 210 ~~~~~~~iP~g~yAvf~~~G~--~~~l~~~~~~i~~~Wlp~sgy~-~--~~~p~~E~Y~~~~~~~~~~~~~~~~tEI~iP 284 (292)
T 1d5y_A 210 LTGHPVMLQGGEYVMFTYEGL--GTGVQEFILTVYGTCMPMLNLT-R--RKGQDIERYYPAEDAKAGDRPINLRCELLIP 284 (292)
T ss_dssp TTCEEEEECCEEEEEEEEEEE--GGGHHHHHHHHHHTHHHHTTCE-E--CSSCEEEEECGGGC----CCSCEEEEEEEEE
T ss_pred CcceEEEECCCcEEEEEecCC--HHHHHHHHHHHHHHhcccCCCc-c--CCCCcEEEEeeccccCCCCCCCceEEEEEEE
Confidence 468899999999999999994 556788888886 999999963 1 2223344554 333221 1224599999
Q ss_pred eecc
Q 022483 291 VERK 294 (296)
Q Consensus 291 v~~~ 294 (296)
|+.+
T Consensus 285 I~~k 288 (292)
T 1d5y_A 285 IRRK 288 (292)
T ss_dssp EECC
T ss_pred eehh
Confidence 9865
No 10
>3gk6_A Integron cassette protein VCH_CASS2; novel, oyster PO HOLE, USA, structural genomics, PSI-2; HET: MSE PE4; 1.80A {Vibrio cholerae}
Probab=86.90 E-value=8.4 Score=31.87 Aligned_cols=66 Identities=11% Similarity=0.088 Sum_probs=47.2
Q ss_pred CCeEEEEecCeEEEEEEeCCcCChHHHHHHHHHHHHHHhcCC--CcceecCCcEEEEEeCCCCCCCCCCceeEEEEee
Q 022483 217 PSVRIKEVPKKVVAVVAFSGFVTDEDVKRRELKLRDALKGDR--QFRVKEGASVEVAQYNPPFTLPFTRRNEIALEVE 292 (296)
Q Consensus 217 ~~V~I~~~P~~~vaV~~F~G~~t~~~v~~~~~~L~~~L~~~g--~~~v~~~~~~~~A~YDpP~t~p~~RrNEVwi~v~ 292 (296)
..+...++|+.++||.++.|-.. +.+.+--+.+..||-..| .. ....+-+-.|+... .-||||+|+
T Consensus 103 ~g~~~~~IP~g~YAVF~~~G~~p-~~i~~~w~~I~~WlP~sg~~y~---~~~~pdfE~Y~~~~------~~eI~IpI~ 170 (170)
T 3gk6_A 103 SESVKTKVSSGKYVTFSATGEMP-QVVIDLWNEVWNYFASEHCPHK---RAYTTDFEYYKSAN------TVEISIAVR 170 (170)
T ss_dssp TTCEEEEECCEEEEEEEEESSTT-HHHHHHHHHHHHHHC---CCCC---BCCSEEEEECCSSS------EEEEEEEBC
T ss_pred CCcEEEEECCCCEEEEEecCCCH-HHHHHHHHHHHHhhhhcCCcce---ecCcCCEEEECCCC------eEEEEEEEC
Confidence 57888999999999999999554 367777777777999988 42 23456677786531 679999985
No 11
>3e0h_A Uncharacterized protein; chlorobium tepidum, structural genomics, PSI-2, protein structure initiative; 1.81A {Chlorobaculum tepidum} PDB: 2kcu_A
Probab=82.86 E-value=6.1 Score=31.43 Aligned_cols=70 Identities=11% Similarity=0.082 Sum_probs=47.7
Q ss_pred CeEEEEecCeEEEEEEeCCcCCh--HHHHHHHHHHHHHHhcCCCcceecCCcEEEEEeCCCCCCCCCCceeEEEEeec
Q 022483 218 SVRIKEVPKKVVAVVAFSGFVTD--EDVKRRELKLRDALKGDRQFRVKEGASVEVAQYNPPFTLPFTRRNEIALEVER 293 (296)
Q Consensus 218 ~V~I~~~P~~~vaV~~F~G~~t~--~~v~~~~~~L~~~L~~~g~~~v~~~~~~~~A~YDpP~t~p~~RrNEVwi~v~~ 293 (296)
+|+|+++|+.+|+.++..|...+ ..+.+.-.+|.+++..+|+. ..+..+...|| +.. -.-+=|+.++|..
T Consensus 8 ~v~I~~~p~~~va~ir~~~~~~~~~~~i~~~~~~l~~~~~~~~l~---~~g~~~~iy~d--~~~-~~~~~~~~~~v~~ 79 (158)
T 3e0h_A 8 VCELKELAPVPALLIRTQTTMSELGSLFEAGYHDILQLLAGQGKS---PSGPPFARYFG--MSA-GTFEVEFGFPVEG 79 (158)
T ss_dssp CEEEEEECCCEEEEEEEEECHHHHHHHHHHHHHHHHHHHHHTTCC---CSSCCEEEEES--CTT-SCEEEEEEEECCS
T ss_pred ccEEEeeCCceEEEEEeecCHHHHHHHHHHHHHHHHHHHHHcCCC---CCCCeEEEEec--CCC-cceEEEEEEEeCC
Confidence 68999999999999999997532 23446667899999999863 23444444455 222 2345677777754
No 12
>3b49_A LIN2189 protein; BIG 860.1, structural genomics, MCSG, SAD, PSI-2, protein ST initiative, midwest center for structural genomics; HET: MSE; 1.60A {Listeria innocua CLIP11262}
Probab=74.39 E-value=13 Score=31.57 Aligned_cols=43 Identities=16% Similarity=0.021 Sum_probs=37.2
Q ss_pred CCeEEEEecCeEEEEEEeCCcCChHHHHHHHHHHHHHH------hcCCC
Q 022483 217 PSVRIKEVPKKVVAVVAFSGFVTDEDVKRRELKLRDAL------KGDRQ 259 (296)
Q Consensus 217 ~~V~I~~~P~~~vaV~~F~G~~t~~~v~~~~~~L~~~L------~~~g~ 259 (296)
-+|.|.++|++.++.++..|-+.+..+.+...+|..++ .++|+
T Consensus 23 ~~v~i~~~p~~~v~~i~~~g~~~~~~~~~~~~~L~~~~~~ik~~~~~~~ 71 (211)
T 3b49_A 23 RKPERIFVPEMNFLMVDGKGDPDGEEYQKAVQSLYAIAYTIKMSKMGET 71 (211)
T ss_dssp SSCEEEEEEEEEEEEEEEESCTTSHHHHHHHHHHHHHHHHHHHGGGSCC
T ss_pred CCcEEEEECCeeEEEEEeecCCCHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 46899999999999999888766557889999999999 88875
No 13
>1jyh_A DNA gyrase inhibitory protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; HET: DNA; 1.80A {Escherichia coli} SCOP: d.60.1.3
Probab=69.62 E-value=27 Score=26.26 Aligned_cols=70 Identities=20% Similarity=0.160 Sum_probs=46.8
Q ss_pred CeEEEEecCeEEEEEEeCCcCChHHHHHHHHHHHHHHhcCCCcceecCCcEEEEEeCCCCCCC-CCCceeEEEEee
Q 022483 218 SVRIKEVPKKVVAVVAFSGFVTDEDVKRRELKLRDALKGDRQFRVKEGASVEVAQYNPPFTLP-FTRRNEIALEVE 292 (296)
Q Consensus 218 ~V~I~~~P~~~vaV~~F~G~~t~~~v~~~~~~L~~~L~~~g~~~v~~~~~~~~A~YDpP~t~p-~~RrNEVwi~v~ 292 (296)
+|.|++.|+..++.++..|-.. +.+.+.-.+|.+++..+|+. . ...+...||.|...+ -.-+-++.+.+.
T Consensus 2 ~~~i~~~~~~~v~~~~~~g~~~-~~i~~~~~~l~~~~~~~~~~---~-~~~~gi~~~~~~~~~~~~~~~~~~~~v~ 72 (157)
T 1jyh_A 2 NYEIKQEEKRTVAGFHLVGPWE-QTVKKGFEQLMMWVDSKNIV---P-KEWVAVYYDNPDETPAEKLRCDTVVTVP 72 (157)
T ss_dssp CCEEEEECCEEEEEEEEESCHH-HHHHHHHHHHHHHHHHTTCC---C-SEEEEEECSCTTTSCGGGCEEEEEEEEC
T ss_pred CCEEEEeCCeEEEEEEEECCch-hhHHHHHHHHHHHHHHcCCC---C-CcEEEEECCCCCCCCHHHheEEEEEEec
Confidence 4789999999999888887542 45677778899999888853 2 234445567775321 122455666664
No 14
>1r8e_A Multidrug-efflux transporter regulator; protein-DNA complex, MERR-family transcription activator, MU binding protein; HET: P4P; 2.40A {Bacillus subtilis} SCOP: a.6.1.3 d.60.1.1 PDB: 1exi_A* 1exj_A* 3iao_A 3q5p_A* 3d71_A* 3q3d_A* 3q1m_A* 3q2y_A* 3q5r_A* 3q5s_A* 3d70_A 3d6z_A* 3d6y_A* 1bow_A 2bow_A*
Probab=58.56 E-value=13 Score=32.55 Aligned_cols=73 Identities=15% Similarity=-0.000 Sum_probs=46.7
Q ss_pred CCCeEEEEecCeEEEEEEe-CCcCChHHH-HHHHHHHHHHHhcCCCcceecCCcEEEEEeCCCCCCCCCCce-eEEEEee
Q 022483 216 DPSVRIKEVPKKVVAVVAF-SGFVTDEDV-KRRELKLRDALKGDRQFRVKEGASVEVAQYNPPFTLPFTRRN-EIALEVE 292 (296)
Q Consensus 216 d~~V~I~~~P~~~vaV~~F-~G~~t~~~v-~~~~~~L~~~L~~~g~~~v~~~~~~~~A~YDpP~t~p~~RrN-EVwi~v~ 292 (296)
..+|.|+++|+..++..+. .|.. ..+ .+...+|.+++.+.|.. ..+.+.+..+|++++..-.++. ++.+.+.
T Consensus 121 ~~~v~I~~~p~~~v~~~~~~~~~~--~~i~~~~~~~l~~~~~~~~l~---~~~~~g~~~~~~~~~~~~~~~~~~~~v~v~ 195 (278)
T 1r8e_A 121 LGEVFVLDEEEIRIIQTEAEGIGP--ENVLNASYSKLKKFIESADGF---TNNSYGATFSFQPYTSIDEMTYRHIFTPVL 195 (278)
T ss_dssp TTCCEEEEECCEEEEEEECTTCCT--TTCCGGGGHHHHHHHHHHHSS---CCCCEEEEECCCCCSCGGGCCCSEEEEECC
T ss_pred CCceEEEEcCCeEEEEeecCCCCh--HhHHHHHHHHHHHHHHHcCCc---ccCceEEEEEhHHhhcCCCcceeEEEEEec
Confidence 3569999999999998888 5533 222 34456788899887753 2344544455666665323333 6888775
Q ss_pred c
Q 022483 293 R 293 (296)
Q Consensus 293 ~ 293 (296)
.
T Consensus 196 ~ 196 (278)
T 1r8e_A 196 T 196 (278)
T ss_dssp C
T ss_pred C
Confidence 4
No 15
>1d5y_A ROB transcription factor; protein-DNA complex, DNA, transcription/DNA complex; HET: DNA; 2.70A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 d.60.1.2
Probab=24.92 E-value=2.9e+02 Score=23.62 Aligned_cols=58 Identities=10% Similarity=0.039 Sum_probs=37.1
Q ss_pred CCeEEEEecCeEEEEEEeCCcCChHHHH----HHHHHHHHHHhcCCCcceecCCcEEEEEeCCCC
Q 022483 217 PSVRIKEVPKKVVAVVAFSGFVTDEDVK----RRELKLRDALKGDRQFRVKEGASVEVAQYNPPF 277 (296)
Q Consensus 217 ~~V~I~~~P~~~vaV~~F~G~~t~~~v~----~~~~~L~~~L~~~g~~~v~~~~~~~~A~YDpP~ 277 (296)
.+|.|++.|+..|+.++..|...++.+. ....+|.+.+...+.. ..+..+...||.|-
T Consensus 124 m~~~I~~~~~~~v~gi~~~~~~~~~~~~~~~~~~i~~lw~~~~~~~~~---~~~~~~gi~~d~~~ 185 (292)
T 1d5y_A 124 PEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPT---IPPVLYGLNETRPS 185 (292)
T ss_dssp CCEEEEEECCEEEEEEEEECCCCGGGHHHHHHHHHHHHHHHHHHHCSS---CCSCEEEEEEEEEC
T ss_pred CCceEEEeCCeEEeeEEeeeccccccccccchhhhHHHHHHHhcccCC---CCCCEEEEEecCCC
Confidence 4699999999999999999866543332 4455666666554321 23344555666554
No 16
>2dix_A Interferon-inducible double stranded RNA- dependent protein kinase activator A; structure genomics, DSRM domain, hypothetical protein PRKRA; NMR {Homo sapiens} SCOP: d.50.1.1
Probab=23.50 E-value=1.9e+02 Score=21.01 Aligned_cols=63 Identities=16% Similarity=0.116 Sum_probs=36.0
Q ss_pred hHHHhhcCCCcCCCCeEEEEecC-----CeEEEEeCCeeEEEEEcCCCCccCh--hhhhHHHHHHHHhhccCCC
Q 022483 91 LEEALMAVPDLETVKFKVLSRRG-----QYEIREVESYFIAETTMPGRTGFDL--NGASRSFNVLAEYLFGKNT 157 (296)
Q Consensus 91 ~~~~~~~~~~~E~P~Y~Vl~~~~-----~yEiR~Y~~~~wasT~v~g~s~~~~--~a~~~gF~~L~~YI~G~N~ 157 (296)
|-|-+.... ..|.|+++...+ .|.++-+=...+. .-.|.+-... .|+..++..|..+.+|.+.
T Consensus 14 LqE~~q~~~--~~p~Y~~~~~~Gp~h~~~F~~~v~v~~~~~--~G~G~SKK~Aeq~AA~~aL~~L~~~~~g~s~ 83 (84)
T 2dix_A 14 LHEYGMKTK--NIPVYECERSDVQIHVPTFTFRVTVGDITC--TGEGTSKKLAKHRAAEAAINILKANASGPSS 83 (84)
T ss_dssp HHHHHHHTT--CCCEEEEEEEECSSSSCEEEEEEEETTEEE--EECSSCTTHHHHHHHHHHHHHHHHTCCCCCC
T ss_pred HHHHHHHcC--CCCeEEEEEeECCCCCCeEEEEEEECCEEE--EeeeCCHHHHHHHHHHHHHHHHhccccCCCC
Confidence 444444443 479999987532 3666555333333 3334332211 2566789999988888653
No 17
>2q3l_A Uncharacterized protein; SPOIIAA-like fold, structural genomics, joint center for STR genomics, JCSG, protein structure initiative; HET: MSE; 2.25A {Shewanella loihica pv-4} SCOP: c.13.2.2
Probab=22.69 E-value=1.2e+02 Score=23.58 Aligned_cols=42 Identities=21% Similarity=0.248 Sum_probs=36.1
Q ss_pred CeEEEEecCeEEEEEEeCCcCChHHHHHHHHHHHHHHhcCCC
Q 022483 218 SVRIKEVPKKVVAVVAFSGFVTDEDVKRRELKLRDALKGDRQ 259 (296)
Q Consensus 218 ~V~I~~~P~~~vaV~~F~G~~t~~~v~~~~~~L~~~L~~~g~ 259 (296)
.+.|....+..+.+.+.+|..+.+++++-...|.+.|++.+.
T Consensus 10 mi~i~~~~~~~vl~v~~~G~lt~~d~~~l~~~l~~~l~~~~~ 51 (126)
T 2q3l_A 10 AIGIERSQDDFYLAFKAVGKLTHEDYEQMTPLLESALAGIKT 51 (126)
T ss_dssp EEEEEEETTEEEEEEEEEEEECHHHHHHHHHHHHHHTTTCCS
T ss_pred eEEEEEcCCCCEEEEEEEeeECHHHHHHHHHHHHHHHHhCCC
Confidence 366777788889999999999999999988888888888775
No 18
>2ook_A Hypothetical protein; structural genomics, JOIN for structural genomics, JCSG, protein structure initiative unknown function; HET: MSE; 1.80A {Shewanella frigidimarina} SCOP: c.13.2.2
Probab=20.94 E-value=1.9e+02 Score=22.45 Aligned_cols=41 Identities=20% Similarity=0.192 Sum_probs=35.3
Q ss_pred eEEEEecCeEEEEEEeCCcCChHHHHHHHHHHHHHHhc--CCC
Q 022483 219 VRIKEVPKKVVAVVAFSGFVTDEDVKRRELKLRDALKG--DRQ 259 (296)
Q Consensus 219 V~I~~~P~~~vaV~~F~G~~t~~~v~~~~~~L~~~L~~--~g~ 259 (296)
+.|....+..+.+.+.+|..+.+++++-...|.+.|++ ++.
T Consensus 11 i~i~~~~~~~vl~v~~~G~lt~eD~~~l~~~i~~~l~~~~~~~ 53 (127)
T 2ook_A 11 IGINRIESVFFVTLKAIGTLTHEDYLVITPMLEGALSQVDQPK 53 (127)
T ss_dssp EEEEEETTEEEEEEEEEEEECHHHHHHHHHHHHHHHTTCCCSS
T ss_pred EEEEEcCCCCEEEEEEeeeECHHHHHHHHHHHHHHHhhccCCC
Confidence 56677778888999999999999999888888889998 664
Done!