Query 022484
Match_columns 296
No_of_seqs 344 out of 2105
Neff 9.0
Searched_HMMs 29240
Date Mon Mar 25 06:13:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022484.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022484hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4aps_A DI-OR tripeptide H+ sym 99.8 2.8E-20 9.7E-25 174.4 17.5 189 9-220 7-200 (491)
2 2xut_A Proton/peptide symporte 99.8 1.5E-19 5.3E-24 170.8 18.1 194 11-226 8-208 (524)
3 3o7q_A L-fucose-proton symport 99.8 4.9E-17 1.7E-21 149.7 20.2 177 11-211 22-224 (438)
4 1pw4_A Glycerol-3-phosphate tr 99.7 1.5E-17 5E-22 153.7 11.4 172 14-213 27-203 (451)
5 2gfp_A EMRD, multidrug resista 99.7 1.4E-16 4.8E-21 144.1 13.2 166 19-211 4-169 (375)
6 4gc0_A D-xylose-proton symport 99.7 8.5E-16 2.9E-20 143.7 14.0 176 50-233 54-239 (491)
7 1pw4_A Glycerol-3-phosphate tr 99.5 9.1E-14 3.1E-18 128.1 15.9 177 15-215 252-432 (451)
8 3o7q_A L-fucose-proton symport 99.5 1.9E-12 6.4E-17 118.9 17.8 168 15-211 258-427 (438)
9 2cfq_A Lactose permease; trans 99.4 2.3E-12 8E-17 118.5 11.6 165 25-215 230-398 (417)
10 2cfq_A Lactose permease; trans 99.3 2.3E-13 7.8E-18 125.3 0.9 171 15-206 7-177 (417)
11 4aps_A DI-OR tripeptide H+ sym 99.3 2.2E-11 7.6E-16 113.7 13.6 184 17-218 285-473 (491)
12 4gc0_A D-xylose-proton symport 99.2 6.3E-10 2.1E-14 103.7 20.5 182 17-220 278-466 (491)
13 2gfp_A EMRD, multidrug resista 99.0 1E-10 3.4E-15 105.4 1.4 165 15-204 199-364 (375)
14 2xut_A Proton/peptide symporte 98.2 4.8E-07 1.7E-11 84.9 3.7 90 124-219 405-505 (524)
No 1
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.84 E-value=2.8e-20 Score=174.38 Aligned_cols=189 Identities=20% Similarity=0.322 Sum_probs=160.7
Q ss_pred cccCCchhHHHHHHHHHHHHHHHHHhHHhHHHHhhhh-----cCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhH
Q 022484 9 KQKGGFRACTFVFVLSALENMGFIANGISMVLYFKNE-----MHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFA 83 (296)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~-----l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~ 83 (296)
..++++|.++.+....+++++++|++..+++.|++++ +|++..+.+++.+.+.++..++.+++|+++||++|||+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~ 86 (491)
T 4aps_A 7 TFFGQPLGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARP 86 (491)
T ss_dssp ----CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHH
T ss_pred hhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchH
Confidence 3445788888888999999999999999999999988 99999999999999999999999999999999339999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhh
Q 022484 84 TCLVFGTLEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKA 163 (296)
Q Consensus 84 ~i~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~ 163 (296)
++.++.++..++.+++..+. +...++++|++.|+|.|...++..++++|.+|++++ +
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~----~ 143 (491)
T 4aps_A 87 AVFWGGVLIMLGHIVLALPF-------------------GASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDR----R 143 (491)
T ss_dssp HHHHHHHHHHHHHHHHHSCC-------------------STTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTT----H
T ss_pred HHHHHHHHHHHHHHHHHHhh-------------------hHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccc----c
Confidence 99999999998887765432 346788999999999999999999999999997652 2
Q ss_pred hhhhHHHHHHHHHHHHHHHHhhhhhhccccchhHHHHHHHHHHHHHHHHHHhcCCce
Q 022484 164 LASYFNFYLFATTLAAMIGVTAIVYVFIDQGWWLGFLISSVATLIGLIALAIGKPFY 220 (296)
Q Consensus 164 r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~gw~~~f~i~~~~~~~~~i~~~~~~~~~ 220 (296)
|+..+++++.+.++|..++|.+++++.++.||++.|++.++..+++.++++...+++
T Consensus 144 r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~ 200 (491)
T 4aps_A 144 RDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKT 200 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCccc
Confidence 678888889999999999999999999889999999998777666665555444443
No 2
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.83 E-value=1.5e-19 Score=170.85 Aligned_cols=194 Identities=19% Similarity=0.349 Sum_probs=158.4
Q ss_pred cCCchhHHHHHHHHHHHHHHHHHhHHhHHHHhhhhcC------CChhhHHHHHHHHHHHHHHHHhHHHHHhhhcC-chhH
Q 022484 11 KGGFRACTFVFVLSALENMGFIANGISMVLYFKNEMH------FDIAGASNTLTNFFGSTFLLCLVGGFISDTYL-SRFA 83 (296)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~------~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~-GRr~ 83 (296)
++++|.++.+.+..++.++++|++..+++.|+++++| ++..+++++.+.+.++..++.+++|+++|| + |||+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr-~~g~r~ 86 (524)
T 2xut_A 8 PKWPRQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADR-FFGKYN 86 (524)
T ss_dssp -----CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTT-SSCSHH
T ss_pred ccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcchH
Confidence 4456777788888999999999999999999999999 999999999999999999999999999999 7 9999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhh
Q 022484 84 TCLVFGTLEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKA 163 (296)
Q Consensus 84 ~i~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~ 163 (296)
++.++.++..++.+++..+. .+...++++|++.|++.|...++..++++|.+|+++ |..
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~---r~~ 145 (524)
T 2xut_A 87 TILWLSLIYCVGHAFLAIFE------------------HSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSN---KSL 145 (524)
T ss_dssp HHHHHHHHHHHHHHHHHHTS------------------SCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTT---TTH
T ss_pred HHHHHHHHHHHHHHHHHHhc------------------ccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccc---hHH
Confidence 99999999888887766542 135678899999999999999999999999999765 222
Q ss_pred hhhhHHHHHHHHHHHHHHHHhhhhhhccccchhHHHHHHHHHHHHHHHHHHhcCCceeecCCC
Q 022484 164 LASYFNFYLFATTLAAMIGVTAIVYVFIDQGWWLGFLISSVATLIGLIALAIGKPFYRIQQPG 226 (296)
Q Consensus 164 r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~gw~~~f~i~~~~~~~~~i~~~~~~~~~~~~~~~ 226 (296)
+.+.+++++...++|..++|.+++++.+..+|++.|++.+++.+++.+.++...+++..++|+
T Consensus 146 ~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (524)
T 2xut_A 146 AQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPPE 208 (524)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHHSSSSSCCCCC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHhcccccccCCC
Confidence 356667788899999999999999998888999999988887776666655555554433333
No 3
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.76 E-value=4.9e-17 Score=149.70 Aligned_cols=177 Identities=14% Similarity=0.048 Sum_probs=141.2
Q ss_pred cCCchhHHHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHH
Q 022484 11 KGGFRACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGT 90 (296)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~ 90 (296)
+++++.+..+....+...+..... ..+.+++.+++|++..+.+++.+.+.++..++.+++|+++|| +|||+++.++.+
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr-~g~r~~l~~~~~ 99 (438)
T 3o7q_A 22 RSYIIPFALLCSLFFLWAVANNLN-DILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKK-LSYKAGIITGLF 99 (438)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHH-SCHHHHHHHHHH
T ss_pred hHhHHHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHH-hcchHHHHHHHH
Confidence 345555555555556666655444 444455788999999999999999999999999999999999 799999999999
Q ss_pred HHHHHHHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHH
Q 022484 91 LEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNF 170 (296)
Q Consensus 91 ~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~ 170 (296)
+..++.+++..... ..+...++++|++.|+|.|...+...++++|.+|+++ |+...++
T Consensus 100 ~~~~~~~~~~~~~~----------------~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~ 157 (438)
T 3o7q_A 100 LYALGAALFWPAAE----------------IMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESS------GHFRLNL 157 (438)
T ss_dssp HHHHHHHHHHHHHH----------------TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTT------HHHHHHH
T ss_pred HHHHHHHHHHhccc----------------cccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchh------HHHHHHH
Confidence 99999887743221 1246789999999999999999999999999999765 7788889
Q ss_pred HHHHHHHHHHHHHhhhhhhc-cccc-------------------------hhHHHHHHHHHHHHHHH
Q 022484 171 YLFATTLAAMIGVTAIVYVF-IDQG-------------------------WWLGFLISSVATLIGLI 211 (296)
Q Consensus 171 ~~~~~~~G~~i~~~~~~~l~-~~~g-------------------------w~~~f~i~~~~~~~~~i 211 (296)
++...++|..+++.+++++. +..+ |++.|.+.++..++..+
T Consensus 158 ~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 224 (438)
T 3o7q_A 158 AQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVAL 224 (438)
T ss_dssp HHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 99999999999999998887 4443 89999776665544433
No 4
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.72 E-value=1.5e-17 Score=153.66 Aligned_cols=172 Identities=9% Similarity=0.019 Sum_probs=139.3
Q ss_pred chhHHHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHH
Q 022484 14 FRACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEV 93 (296)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ 93 (296)
|+.++......+......+.....++. +.+++ .+..+.+++.+++.++..++.+++|+++|| +|||+++.++.++..
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr-~g~r~~l~~~~~~~~ 103 (451)
T 1pw4_A 27 WQIFLGIFFGYAAYYLVRKNFALAMPY-LVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDR-SNPRVFLPAGLILAA 103 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHTSHHHHHHH-TTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHH-SCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHh-cCchHHHHHHHHHHH
Confidence 344444455555555554444455554 55667 999999999999999999999999999999 799999999999999
Q ss_pred HHHHHHHH----HhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHH
Q 022484 94 LSLVMLTI----QAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFN 169 (296)
Q Consensus 94 ig~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~ 169 (296)
++.+++.+ +. +...++++|++.|++.|...+...++++|.+|+++ |++.++
T Consensus 104 ~~~~~~~~~~~~~~-------------------~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~------r~~~~~ 158 (451)
T 1pw4_A 104 AVMLFMGFVPWATS-------------------SIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKE------RGGIVS 158 (451)
T ss_dssp HHHHHHHHCHHHHS-------------------SSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTH------HHHHHH
T ss_pred HHHHHHHhhhhccc-------------------cHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchh------hhHHHH
Confidence 99888776 42 24578899999999999999999999999998654 788889
Q ss_pred HHHHHHHHHHHHHHhhhhhhccccc-hhHHHHHHHHHHHHHHHHH
Q 022484 170 FYLFATTLAAMIGVTAIVYVFIDQG-WWLGFLISSVATLIGLIAL 213 (296)
Q Consensus 170 ~~~~~~~~G~~i~~~~~~~l~~~~g-w~~~f~i~~~~~~~~~i~~ 213 (296)
+++.+.++|..++|.+++++.+..+ |++.|++.+++.++..++.
T Consensus 159 ~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~ 203 (451)
T 1pw4_A 159 VWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFA 203 (451)
T ss_dssp HHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998878788 9999998877665544433
No 5
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.69 E-value=1.4e-16 Score=144.07 Aligned_cols=166 Identities=11% Similarity=0.080 Sum_probs=138.9
Q ss_pred HHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHHHHH
Q 022484 19 FVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVM 98 (296)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig~~~ 98 (296)
.+....++...........++. +.+++|.+..+.+++.+.+.++..++.++.|+++|| +|||+++..+.++..++.++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~~~~~~ 81 (375)
T 2gfp_A 4 MLVLLVAVGQMAQTIYIPAIAD-MARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDR-VGRRPVILVGMSIFMLATLV 81 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-HHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTT-SCCCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhHH-HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCchhHHHHHHHHHHHHHH
Confidence 3444555556655555555555 567899999999999999999999999999999999 79999999999999998887
Q ss_pred HHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHH
Q 022484 99 LTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLA 178 (296)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~G 178 (296)
...+. +...++++|++.|++.+...+...+++.|.+|+++ |++.++.++...++|
T Consensus 82 ~~~~~-------------------~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g 136 (375)
T 2gfp_A 82 AVTTS-------------------SLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQ------LRHANSLLNMGILVS 136 (375)
T ss_dssp HHHHH-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS------CCSHHHHHHHHHHHH
T ss_pred HHHhc-------------------cHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHH------HHHHHHHHHHHHHHH
Confidence 77653 45678899999999999999999999999998655 788888999999999
Q ss_pred HHHHHhhhhhhccccchhHHHHHHHHHHHHHHH
Q 022484 179 AMIGVTAIVYVFIDQGWWLGFLISSVATLIGLI 211 (296)
Q Consensus 179 ~~i~~~~~~~l~~~~gw~~~f~i~~~~~~~~~i 211 (296)
..++|.+++++.+..+|++.|.+.++..++..+
T Consensus 137 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 169 (375)
T 2gfp_A 137 PLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTF 169 (375)
T ss_dssp HHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 999999999998888999999887776655444
No 6
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.66 E-value=8.5e-16 Score=143.70 Aligned_cols=176 Identities=13% Similarity=0.095 Sum_probs=123.8
Q ss_pred hhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHH
Q 022484 50 IAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYG 129 (296)
Q Consensus 50 ~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (296)
+...+++++.+.++..+|++++|+++|| +|||+++.++.+++.++.++.+++......... ...-...-..+...+++
T Consensus 54 ~~~~g~~~s~~~~G~~iG~~~~G~laDr-~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~-~~~~~~~~a~~~~~l~~ 131 (491)
T 4gc0_A 54 NSLLGFCVASALIGCIIGGALGGYCSNR-FGRRDSLKIAAVLFFISGVGSAWPELGFTSINP-DNTVPVYLAGYVPEFVI 131 (491)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSS-SSSCCGGGGGCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcc-hhHHHHHHhhhHHHHHH
Confidence 3456778888999999999999999999 799999999999999998887753210000000 00000001235788999
Q ss_pred HHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhcc--------ccchhHHHHH
Q 022484 130 SLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAIVYVFI--------DQGWWLGFLI 201 (296)
Q Consensus 130 ~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~--------~~gw~~~f~i 201 (296)
+|++.|+|.|+..+..+.+++|..|++. |+...++++.+..+|..+++.+...+.. ...|+..+.+
T Consensus 132 ~R~l~G~g~G~~~~~~~~~i~E~~p~~~------rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (491)
T 4gc0_A 132 YRIIGGIGVGLASMLSPMYIAELAPAHI------RGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFAS 205 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSCGGG------HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCHHh------hhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhh
Confidence 9999999999999999999999999654 7788888888888888888766554432 2356766665
Q ss_pred HHHHHHH--HHHHHHhcCCceeecCCCCChhhhh
Q 022484 202 SSVATLI--GLIALAIGKPFYRIQQPGESPLVRV 233 (296)
Q Consensus 202 ~~~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~~ 233 (296)
..+..++ ....+.+++|+|...+.+.++..+.
T Consensus 206 ~~~~~~~~~~~~~~~peSp~~L~~~~~~~~a~~~ 239 (491)
T 4gc0_A 206 ECIPALLFLMLLYTVPESPRWLMSRGKQEQAEGI 239 (491)
T ss_dssp THHHHHHHHHHGGGSCCCHHHHHHTTCHHHHHHH
T ss_pred hhhhhhhhhhhhhcCCCChHHHHHcCchhHHHHh
Confidence 5443333 3334567889988877664433333
No 7
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.55 E-value=9.1e-14 Score=128.10 Aligned_cols=177 Identities=12% Similarity=0.073 Sum_probs=142.7
Q ss_pred hhHHHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcC--chhHHHHHHHHHH
Q 022484 15 RACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYL--SRFATCLVFGTLE 92 (296)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~--GRr~~i~~~~~~~ 92 (296)
|.++...+..++....++++..+++.|+++.+|++..+++...+...++..++.+++|+++|| + |||+.+.++..+.
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~-~~~~~~~~~~~~~~~~ 330 (451)
T 1pw4_A 252 KLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDK-VFRGNRGATGVFFMTL 330 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCchhHHHHHHHH
Confidence 556677777788888888899999999999899999999999999999999999999999999 8 9999888777665
Q ss_pred H-HHHHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHH
Q 022484 93 V-LSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFY 171 (296)
Q Consensus 93 ~-ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~ 171 (296)
. ++.+++... + ..+...+.+..++.|++.+...+....+..|.+|++. |++.++.+
T Consensus 331 ~~~~~~~~~~~---~--------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~~~~ 387 (451)
T 1pw4_A 331 VTIATIVYWMN---P--------------AGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKA------AGTAAGFT 387 (451)
T ss_dssp HHHHHHHTTSC---C--------------TTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTH------HHHHHHHH
T ss_pred HHHHHHHHHHh---c--------------ccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhh------hhhHHHHH
Confidence 5 444332211 1 1134556667778888888888888899999998654 78999999
Q ss_pred HHHHHH-HHHHHHhhhhhhccccchhHHHHHHHHHHHHHHHHHHh
Q 022484 172 LFATTL-AAMIGVTAIVYVFIDQGWWLGFLISSVATLIGLIALAI 215 (296)
Q Consensus 172 ~~~~~~-G~~i~~~~~~~l~~~~gw~~~f~i~~~~~~~~~i~~~~ 215 (296)
+...++ |..++|.+.+++.+..||+..|++.+++.+++.++.+.
T Consensus 388 ~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 432 (451)
T 1pw4_A 388 GLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIV 432 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHH
Confidence 999999 99999999999999889999998887776666554443
No 8
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.47 E-value=1.9e-12 Score=118.95 Aligned_cols=168 Identities=14% Similarity=0.052 Sum_probs=129.5
Q ss_pred hhHHHHHHHHHHHHHHHHHhHHhHHHH-hhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHH
Q 022484 15 RACTFVFVLSALENMGFIANGISMVLY-FKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEV 93 (296)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~l~~y-l~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ 93 (296)
|.++......++.....+++..+++.| +++.+|++..+++.......++..++.+++|+++|| +|||+++.++.++..
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r-~~~~~~~~~~~~~~~ 336 (438)
T 3o7q_A 258 RHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISR-FAPHKVLAAYALIAM 336 (438)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-SCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHH
Confidence 445666666677777778888999999 888889999999999999999999999999999999 799999999888887
Q ss_pred HHHHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHH
Q 022484 94 LSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLF 173 (296)
Q Consensus 94 ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~ 173 (296)
++.++..... +.. .....++.+++.+...+...++..|.+|++ ++...++..
T Consensus 337 ~~~~~~~~~~-------------------~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~- 388 (438)
T 3o7q_A 337 ALCLISAFAG-------------------GHV-GLIALTLCSAFMSIQYPTIFSLGIKNLGQD-------TKYGSSFIV- 388 (438)
T ss_dssp HHHHHHHHCC-------------------HHH-HHHHHHHHHHHHTTHHHHHHHHHHSSCGGG-------HHHHHHHHH-
T ss_pred HHHHHHHHcC-------------------CcH-HHHHHHHHHHHHHHHHHHHHHHHHhhcccc-------ccchhhHHH-
Confidence 7766554432 112 233447788888888888899988988843 223333333
Q ss_pred HHHHHHHHHHhhhhhhccccc-hhHHHHHHHHHHHHHHH
Q 022484 174 ATTLAAMIGVTAIVYVFIDQG-WWLGFLISSVATLIGLI 211 (296)
Q Consensus 174 ~~~~G~~i~~~~~~~l~~~~g-w~~~f~i~~~~~~~~~i 211 (296)
...+|+.++|.+.+++.+..| ++..|.+.+++.++..+
T Consensus 389 ~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~ 427 (438)
T 3o7q_A 389 MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFI 427 (438)
T ss_dssp HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 567999999999999999888 89888877665544433
No 9
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.37 E-value=2.3e-12 Score=118.54 Aligned_cols=165 Identities=10% Similarity=-0.036 Sum_probs=112.5
Q ss_pred HHHHHHHHHhHHhHHHHhhhhcCCC---hhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHH
Q 022484 25 ALENMGFIANGISMVLYFKNEMHFD---IAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTI 101 (296)
Q Consensus 25 ~~~~~~~~~~~~~l~~yl~~~l~~s---~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig~~~~~~ 101 (296)
+.....++....+++.|+.+.++.. ....+...++..++..++.+++|+++|| +|||+++..+.++..++.+++..
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~g~~~~l~~~~~~~~~~~~~~~~ 308 (417)
T 2cfq_A 230 IGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINR-IGGKNALLLAGTIMSVRIIGSSF 308 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH-hcHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444445566788887666532 3344555566666778889999999999 79999998887777666444322
Q ss_pred HhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHH-HHHHHHHHHH
Q 022484 102 QAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNF-YLFATTLAAM 180 (296)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~-~~~~~~~G~~ 180 (296)
. .+...+++..++.+++.+...+....+.+|.+|++. |++.+++ ++....+|+.
T Consensus 309 ~-------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~~~~~~lg~~ 363 (417)
T 2cfq_A 309 A-------------------TSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRF------SATIYLVCFCFFKQLAMI 363 (417)
T ss_dssp C-------------------CSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHH------HHHHHHHHHTTTHHHHHH
T ss_pred h-------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH------HHHHHHHHHHHHHhHHHH
Confidence 1 122345555555666655555566788999998543 6777777 3566779999
Q ss_pred HHHhhhhhhccccchhHHHHHHHHHHHHHHHHHHh
Q 022484 181 IGVTAIVYVFIDQGWWLGFLISSVATLIGLIALAI 215 (296)
Q Consensus 181 i~~~~~~~l~~~~gw~~~f~i~~~~~~~~~i~~~~ 215 (296)
++|.+++++.+..|+...|.+.+++.+++.++.+.
T Consensus 364 ~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~ 398 (417)
T 2cfq_A 364 FMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVF 398 (417)
T ss_dssp HHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHh
Confidence 99999999988888888888877776666554433
No 10
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.31 E-value=2.3e-13 Score=125.31 Aligned_cols=171 Identities=9% Similarity=-0.041 Sum_probs=110.9
Q ss_pred hhHHHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHH
Q 022484 15 RACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVL 94 (296)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~i 94 (296)
|..+.+....++...++....++++.|+++++|+++.+.+++.+.+.++..++++++|+++|| +|||+++.++..+..+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr-~Grr~~l~~~~~~~~~ 85 (417)
T 2cfq_A 7 TNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDK-LGLRKYLLWIITGMLV 85 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTT-STTCCHHHHHHHHTTS
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHH
Confidence 345555555566666666777899999999999999999999999999999999999999999 7999999988877654
Q ss_pred HHHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHH
Q 022484 95 SLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFA 174 (296)
Q Consensus 95 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~ 174 (296)
+...+......+. ....+..++.+.+++.|...+...+...+..++. .++++..++..+..
T Consensus 86 ~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~----~~~~~~~~g~~~~~ 146 (417)
T 2cfq_A 86 MFAPFFIFIFGPL---------------LQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKV----SRRSNFEFGRARMF 146 (417)
T ss_dssp CHHHHHHHTHHHH---------------HHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHH----HHHHTCCHHHHSSS
T ss_pred HHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHh----hhhcccchHHHHHH
Confidence 3221111000000 0001223444444444443333333333333211 11245555555566
Q ss_pred HHHHHHHHHhhhhhhccccchhHHHHHHHHHH
Q 022484 175 TTLAAMIGVTAIVYVFIDQGWWLGFLISSVAT 206 (296)
Q Consensus 175 ~~~G~~i~~~~~~~l~~~~gw~~~f~i~~~~~ 206 (296)
.++|..++|.+++++.+ .+|+..|++.++..
T Consensus 147 ~~~g~~~~~~l~~~l~~-~~~~~~f~~~~~~~ 177 (417)
T 2cfq_A 147 GCVGWALGASIVGIMFT-INNQFVFWLGSGCA 177 (417)
T ss_dssp TTTHHHHHHHHHHHHHH-HCSHHHHTTTTTTT
T ss_pred HHHHHHHHHHHHHHHHH-hchhHHHHHHHHHH
Confidence 78899999999888876 47898888665543
No 11
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.30 E-value=2.2e-11 Score=113.69 Aligned_cols=184 Identities=9% Similarity=-0.043 Sum_probs=127.9
Q ss_pred HHHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHH-----HHHHH
Q 022484 17 CTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCL-----VFGTL 91 (296)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~-----~~~~~ 91 (296)
.+.+....++....+.....+++.|+++.++.+..+.+.......++..++.++.|++.|| +|||+... ++.++
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r-~~~r~~~~~~~~~~~~~~ 363 (491)
T 4aps_A 285 YIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTA-WKKNQPSSPTKFAVGLMF 363 (491)
T ss_dssp HHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHH-TTTC---CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHH-HhccCCCchHHHHHHHHH
Confidence 3334444455555556667788889998888886677777778888888899999999999 79986544 66666
Q ss_pred HHHHHHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHH
Q 022484 92 EVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFY 171 (296)
Q Consensus 92 ~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~ 171 (296)
..++.+++......... +...+...+.+..++.|++.+...+...++..|.+|++. |++..+++
T Consensus 364 ~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~ 427 (491)
T 4aps_A 364 AGLSFLLMAIPGALYGT----------SGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAF------NSQMMSMW 427 (491)
T ss_dssp HHHHHTTTHHHHHHCCC----------CTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTC------SSSSTHHH
T ss_pred HHHHHHHHHHHHHhcCC----------CCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHH------HHHHHHHH
Confidence 66665554443211000 001234566677788899999888999999999999776 78888888
Q ss_pred HHHHHHHHHHHHhhhhhhccccchhHHHHHHHHHHHHHHHHHHhcCC
Q 022484 172 LFATTLAAMIGVTAIVYVFIDQGWWLGFLISSVATLIGLIALAIGKP 218 (296)
Q Consensus 172 ~~~~~~G~~i~~~~~~~l~~~~gw~~~f~i~~~~~~~~~i~~~~~~~ 218 (296)
+...++|..+++.+.+++.+. ++...|.+.+++.+++.++.+...+
T Consensus 428 ~~~~~~g~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (491)
T 4aps_A 428 FLSSSVGSALNAQLVTLYNAK-SEVAYFSYFGLGSVVLGIVLVFLSK 473 (491)
T ss_dssp HHHHHHHHHHHHHHGGGGGGS-STTHHHHHTHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998888654 5666777766666555554444433
No 12
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.25 E-value=6.3e-10 Score=103.69 Aligned_cols=182 Identities=10% Similarity=-0.044 Sum_probs=114.8
Q ss_pred HHHHHHHHHHHHH-HHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHH
Q 022484 17 CTFVFVLSALENM-GFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLS 95 (296)
Q Consensus 17 ~~~~~~~~~~~~~-~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig 95 (296)
........++..+ +.+.+..+ .+++.+..+.+............+...++.++++++.|| +|||+.++.+.....++
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr-~Grr~~~~~~~~~~~~~ 355 (491)
T 4gc0_A 278 IVIGVMLSIFQQFVGINVVLYY-APEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDK-FGRKPLQIIGALGMAIG 355 (491)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHH-HHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHhc-chHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHh-hcCcchhccchHHHHHH
Confidence 3333333333333 33444333 344556677777777666667778888999999999999 79999999988888877
Q ss_pred HHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHH
Q 022484 96 LVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFAT 175 (296)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~ 175 (296)
.+.+....... ............+..+++.+ ..+....+.+|.||++. |++..++.+...
T Consensus 356 ~~~l~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~E~fPt~~------R~~~~g~~~~~~ 415 (491)
T 4gc0_A 356 MFSLGTAFYTQ-------------APGIVALLSMLFYVAAFAMS-WGPVCWVLLSEIFPNAI------RGKALAIAVAAQ 415 (491)
T ss_dssp HHHHHHHHHTT-------------CCHHHHHHHHHHHHHHHHTT-TTHHHHHHHHHSSCTTT------HHHHHHHHHHHH
T ss_pred HHHHHHHHhcc-------------cchHHHHHHHHHHHHHHHhH-HHHHHHHHHHHhCCHhH------HHHHHHHHHHHH
Confidence 76655443211 01111222222222333333 33566789999999876 788888888888
Q ss_pred HHHHHHHHhhhhhhccc------cchhHHHHHHHHHHHHHHHHHHhcCCce
Q 022484 176 TLAAMIGVTAIVYVFID------QGWWLGFLISSVATLIGLIALAIGKPFY 220 (296)
Q Consensus 176 ~~G~~i~~~~~~~l~~~------~gw~~~f~i~~~~~~~~~i~~~~~~~~~ 220 (296)
.+|+.+++.+.+.+.+. .++...|++.+++.+++.+..+...|+.
T Consensus 416 ~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PET 466 (491)
T 4gc0_A 416 WLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPET 466 (491)
T ss_dssp HHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCC
Confidence 88888888776665432 3445567776666666665555555554
No 13
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=98.96 E-value=1e-10 Score=105.40 Aligned_cols=165 Identities=9% Similarity=-0.059 Sum_probs=120.2
Q ss_pred hhHHHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHH-HH
Q 022484 15 RACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTL-EV 93 (296)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~-~~ 93 (296)
|..+......++.....++...+++.|+++.+|.+..+++.......++..++.++.++++|| +||+ +..+... ..
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r-~~~~--~~~~~~~~~~ 275 (375)
T 2gfp_A 199 SGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKR-FSTL--MWQSVICCLL 275 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTH-HHHH--HHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH--HHHHHHHHHH
Confidence 445556666677777778888889999998899999999999998899999999999999999 6872 2233322 22
Q ss_pred HHHHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHH
Q 022484 94 LSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLF 173 (296)
Q Consensus 94 ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~ 173 (296)
.+......... . ..+...+++..++.+++.+...+...++..|.+| ++ |++..+.++.
T Consensus 276 ~~~~~~~~~~~-~--------------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~------~g~~~g~~~~ 333 (375)
T 2gfp_A 276 AGLLMWIPDWF-G--------------VMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FL------AGTAGALVGG 333 (375)
T ss_dssp TSSSSSHHHHH-H--------------HHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HH------HHHHHHHHHH
T ss_pred HHHHHHHHhhh-c--------------cccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cc------cchHHHHHHH
Confidence 22221111110 0 1134456667788889999899999999999886 22 7888898888
Q ss_pred HHHHHHHHHHhhhhhhccccchhHHHHHHHH
Q 022484 174 ATTLAAMIGVTAIVYVFIDQGWWLGFLISSV 204 (296)
Q Consensus 174 ~~~~G~~i~~~~~~~l~~~~gw~~~f~i~~~ 204 (296)
..++|..+++.+.+++.+..++...+.+.+.
T Consensus 334 ~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~ 364 (375)
T 2gfp_A 334 LQNIGSGVLASLSAMLPQTGQGSLGLLMTLM 364 (375)
T ss_dssp HHHHHHHCCSTTCTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence 9999999999998888777777777665433
No 14
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=98.23 E-value=4.8e-07 Score=84.89 Aligned_cols=90 Identities=12% Similarity=0.014 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhcccc--ch------
Q 022484 124 AAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAIVYVFIDQ--GW------ 195 (296)
Q Consensus 124 ~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~--gw------ 195 (296)
...+.+..++.|++.+...+...++..|.+|++. |++..++++...++|+.++|.+.+++.+.. +|
T Consensus 405 ~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~~~~~~~~~~ 478 (524)
T 2xut_A 405 IFWQILPYALLTFGEVLVSATGLEFAYSQAPKAM------KGTIMSFWTLSVTVGNLWVLLANVSVKSPTVTEQIVQTGM 478 (524)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHTTTHHHHCCTTC------CTTTHHHHGGGHHHHHHHHHHHHHHTTSCHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHH------HhHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccc
Confidence 4556677888999988888999999999999765 788889988899999999999998887632 23
Q ss_pred ---hHHHHHHHHHHHHHHHHHHhcCCc
Q 022484 196 ---WLGFLISSVATLIGLIALAIGKPF 219 (296)
Q Consensus 196 ---~~~f~i~~~~~~~~~i~~~~~~~~ 219 (296)
+..|++.+++.+++.++++...++
T Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 505 (524)
T 2xut_A 479 SVTAFQMFFFAGFAILAAIVFALYARS 505 (524)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 223555555555555544443333
Done!