BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022485
(296 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1YUZ|A Chain A, Partially Reduced State Of Nigerythrin
pdb|1YUZ|B Chain B, Partially Reduced State Of Nigerythrin
Length = 202
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 46/101 (45%), Gaps = 12/101 (11%)
Query: 44 DSPSLSELVHDFLEHELSQAQPPGYDSDSERVDTVADSTELIEDILKSTANGNV----DL 99
++ + +EL+H LE+ L PGY E+ A S + L S ANG + D+
Sbjct: 67 EATAAAELIHIGLEYALVAEMEPGY----EKPTVAAPSAYSCDLNLISGANGEIYETSDM 122
Query: 100 Y----RNLLLTHVLKAMEVFSRLRQQKSVFRRQVMSLLREL 136
Y R KA+ VF+R + +SV + ++ ++
Sbjct: 123 YPAFIRKAQEEGNSKAVHVFTRAKLAESVHAERYLAAYNDI 163
>pdb|2JJH|A Chain A, E243 Mutant Of M. Tuberculosis Rv3290c
Length = 449
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 74 RVDTVADSTELIEDILKSTANGNV-DLYRNLLLTHVLKAMEVFSRLRQQKSVFRRQVMSL 132
RVD VAD+ + L ST GN+ D+ R + V++A +F R Q R ++ L
Sbjct: 312 RVDEVADNVFAVPSRLNSTWGGNLTDMVRARRILEVIEAEGLFERAVQHGKYLRARLDEL 371
>pdb|2CIN|A Chain A, Lysine Aminotransferase From M. Tuberculosis In The
Internal Aldimine Form
pdb|2CJG|A Chain A, Lysine Aminotransferase From M. Tuberculosis In Bound Pmp
Form
pdb|2CJH|A Chain A, Lysine Aminotransferase From M. Tuberculosis In The
Internal Aldimine Form With Bound Substrate 2-
Ketoglutarate
pdb|2JJG|A Chain A, Crystal Structure Of The M. Tuberculosis Lysine-Epsilon
Aminotransferase (Rv3290c) Complexed To An Inhibitor
pdb|2CJD|A Chain A, Lysine Aminotransferase From M. Tuberculosis In External
Aldimine Form
Length = 449
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 74 RVDTVADSTELIEDILKSTANGNV-DLYRNLLLTHVLKAMEVFSRLRQQKSVFRRQVMSL 132
RVD VAD+ + L ST GN+ D+ R + V++A +F R Q R ++ L
Sbjct: 312 RVDEVADNVFAVPSRLNSTWGGNLTDMVRARRILEVIEAEGLFERAVQHGKYLRARLDEL 371
>pdb|1YUX|A Chain A, Mixed Valant State Of Nigerythrin
pdb|1YUX|B Chain B, Mixed Valant State Of Nigerythrin
pdb|1YV1|A Chain A, Fully Reduced State Of Nigerythrin (All Ferrous)
pdb|1YV1|B Chain B, Fully Reduced State Of Nigerythrin (All Ferrous)
Length = 202
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 46/101 (45%), Gaps = 12/101 (11%)
Query: 44 DSPSLSELVHDFLEHELSQAQPPGYDSDSERVDTVADSTELIEDILKSTANGNV----DL 99
++ + +EL+H LE+ L PGY E+ A S + L S ANG + D+
Sbjct: 67 EATAAAELIHIGLEYALVAEMEPGY----EKPTVAAPSAYSCDLNLISGANGEIYETSDM 122
Query: 100 Y----RNLLLTHVLKAMEVFSRLRQQKSVFRRQVMSLLREL 136
Y R KA+ VF+R + +SV + ++ ++
Sbjct: 123 YPAFIRKAQEEGNSKAVHVFTRAKLAESVHAERYLAAYNDI 163
>pdb|2JJF|A Chain A, N328a Mutant Of M. Tuberculosis Rv3290c
Length = 449
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 74 RVDTVADSTELIEDILKSTANGNV-DLYRNLLLTHVLKAMEVFSRLRQQKSVFRRQVMSL 132
RVD VAD+ + L ST GN+ D+ R + V++A +F R Q R ++ L
Sbjct: 312 RVDEVADNVFAVPSRLASTWGGNLTDMVRARRILEVIEAEGLFERAVQHGKYLRARLDEL 371
>pdb|2JJE|A Chain A, Crystal Structure Of T330s Mutant Of Rv3290c From M.
Tuberculosis
Length = 449
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 74 RVDTVADSTELIEDILKSTANGNV-DLYRNLLLTHVLKAMEVFSRLRQQKSVFRRQVMSL 132
RVD VAD+ + L S+ GN+ D+ R + V++A +F R Q R ++ L
Sbjct: 312 RVDEVADNVFAVPSRLNSSWGGNLTDMVRARRILEVIEAEGLFERAVQHGKYLRARLDEL 371
>pdb|2EI9|A Chain A, Crystal Structure Of R1bm Endonuclease Domain
Length = 240
Score = 28.9 bits (63), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 183 AAEFEIARPTSAYTRLSATLPRVYVGKGEEL 213
A I T+A++ L +LPR YVG+G+E+
Sbjct: 119 GARVVICADTNAHSPLWHSLPRHYVGRGQEV 149
>pdb|2P6C|A Chain A, Crystal Structure Of Hypothetical Protein Aq_2013 From
Aquifex Aeolicus Vf5.
pdb|2P6C|B Chain B, Crystal Structure Of Hypothetical Protein Aq_2013 From
Aquifex Aeolicus Vf5
Length = 137
Score = 27.7 bits (60), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 25/49 (51%)
Query: 9 RVTDPLNEKVKAQLIGHQLSYVSSGSEYSAAAVDDDSPSLSELVHDFLE 57
R+TD + + V+ + L VSS S+ + DD L E + ++LE
Sbjct: 20 RITDEVKKAVEESEVKEGLCLVSSMHLTSSVIIQDDEEGLHEDIWEWLE 68
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.131 0.377
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,674,434
Number of Sequences: 62578
Number of extensions: 347715
Number of successful extensions: 1221
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1215
Number of HSP's gapped (non-prelim): 15
length of query: 296
length of database: 14,973,337
effective HSP length: 98
effective length of query: 198
effective length of database: 8,840,693
effective search space: 1750457214
effective search space used: 1750457214
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)