BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 022485
         (296 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q606D8|OTC_METCA Ornithine carbamoyltransferase OS=Methylococcus capsulatus (strain
           ATCC 33009 / NCIMB 11132 / Bath) GN=argF PE=3 SV=1
          Length = 298

 Score = 34.3 bits (77), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 30/109 (27%), Positives = 50/109 (45%), Gaps = 9/109 (8%)

Query: 37  SAAAVDDDSPSLSELVH--DFLEHELSQAQPPGYDSDSERVDTVADSTELIEDILKSTAN 94
           + A + D +      VH    L+  L  A PPGY+ ++E V+      E+  D+ ++  N
Sbjct: 150 TVAWIGDGNNMCQTYVHAAGLLDFRLRIACPPGYEPEAELVEAAGKCVEVGHDV-RTAVN 208

Query: 95  GNVDLYRNLLLTHVLKAMEVFSRLRQQKSVFR-RQVMSLLRELGHNAAI 142
           G      +L++T V  +M   S   ++   FR  QV + L  L H  A+
Sbjct: 209 GA-----DLVVTDVWASMGQESEQTERTGAFRDYQVNAALMALAHADAL 252


>sp|Q9LM76|PUB44_ARATH U-box domain-containing protein 44 OS=Arabidopsis thaliana GN=PUB44
           PE=1 SV=1
          Length = 801

 Score = 32.7 bits (73), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 28/100 (28%), Positives = 46/100 (46%), Gaps = 14/100 (14%)

Query: 118 LRQQKSVFRRQVMSLLRELGHNAAICKTKWSSSG------GLTAGNYEYIDVVQSDSYTS 171
           L  + S  R   +SLL EL  + A+C+   S  G      GLT+ N E + +V+      
Sbjct: 195 LSHEPSKGREAAVSLLFELSKSEALCEKIGSIHGALILLVGLTSSNSENVSIVEK----- 249

Query: 172 TQNRYFVDLDFAAEFEIARPTSAYTRLSATLPRVYVGKGE 211
             +R   +++ +   EI R  ++Y RL   L ++  G  E
Sbjct: 250 -ADRTLENMERSE--EIVRQMASYGRLQPLLGKLLEGSPE 286


>sp|Q8PLD9|GREA_XANAC Transcription elongation factor GreA OS=Xanthomonas axonopodis pv.
           citri (strain 306) GN=greA PE=3 SV=1
          Length = 158

 Score = 32.0 bits (71), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 32/129 (24%), Positives = 54/129 (41%), Gaps = 21/129 (16%)

Query: 83  ELIEDILKSTANGNVDLYRNLLLTHVLKAMEVFSRLRQQKSVFRRQVMSLLRELGHNAAI 142
           E+I  I ++ A+G+            LK    +   R+Q+S    ++  L  EL H   I
Sbjct: 27  EVINAIAEARAHGD------------LKENAEYHAAREQQSFIEGRIKQLESELSHAEII 74

Query: 143 CKTKWSSSGGLTAGNYEYIDVVQSDSYTSTQNRYFVDLDFAAEFEIARPTSAYTRLSATL 202
             TK S+   +  G      V  +D+ T  + RY +  D  A+ ++         +S+ L
Sbjct: 75  DITKLSAGTKIVFGAT----VTLADTETDEEKRYQIVGDLEADIKM-----GLIAISSPL 125

Query: 203 PRVYVGKGE 211
            R  +GK E
Sbjct: 126 ARALIGKLE 134


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.315    0.131    0.377 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 108,009,495
Number of Sequences: 539616
Number of extensions: 4344928
Number of successful extensions: 13009
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 13008
Number of HSP's gapped (non-prelim): 12
length of query: 296
length of database: 191,569,459
effective HSP length: 117
effective length of query: 179
effective length of database: 128,434,387
effective search space: 22989755273
effective search space used: 22989755273
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (28.1 bits)