Query 022485
Match_columns 296
No_of_seqs 171 out of 219
Neff 4.4
Searched_HMMs 46136
Date Fri Mar 29 03:53:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022485.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022485hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04720 DUF506: Protein of un 100.0 2.4E-70 5.2E-75 496.6 21.8 205 48-254 1-218 (218)
2 TIGR01615 A_thal_3542 uncharac 100.0 2.4E-63 5.3E-68 420.1 14.0 131 126-256 1-131 (131)
3 PF00797 Acetyltransf_2: N-ace 94.2 0.13 2.9E-06 46.2 6.4 59 121-185 46-109 (240)
4 PRK15047 N-hydroxyarylamine O- 91.6 0.5 1.1E-05 45.0 6.6 54 126-185 73-128 (281)
5 PF08742 C8: C8 domain; Inter 79.5 1.7 3.8E-05 32.5 2.6 62 176-242 10-71 (74)
6 PF14475 Mso1_Sec1_bdg: Sec1-b 74.5 3.3 7.2E-05 29.3 2.6 20 219-238 21-40 (41)
7 smart00460 TGc Transglutaminas 69.3 25 0.00054 24.9 6.4 51 125-181 12-67 (68)
8 PF01841 Transglut_core: Trans 65.3 18 0.0004 27.9 5.4 51 125-180 57-113 (113)
9 COG2162 NhoA Arylamine N-acety 59.8 25 0.00055 34.0 6.2 58 126-189 74-134 (275)
10 PRK14675 hypothetical protein; 52.4 64 0.0014 27.4 6.9 82 128-239 17-98 (125)
11 PF08774 VRR_NUC: VRR-NUC doma 52.3 16 0.00034 28.8 3.0 27 121-147 74-100 (100)
12 PF09551 Spore_II_R: Stage II 43.7 1.5E+02 0.0033 25.7 7.9 46 122-167 54-107 (130)
13 PRK08462 biotin carboxylase; V 39.6 59 0.0013 32.1 5.5 113 122-239 12-136 (445)
14 PF15645 Tox-PLDMTX: Dermonecr 39.2 1.1E+02 0.0023 26.7 6.3 72 125-214 10-84 (135)
15 TIGR00514 accC acetyl-CoA carb 39.0 50 0.0011 32.8 4.9 116 122-239 10-134 (449)
16 PRK08463 acetyl-CoA carboxylas 38.5 46 0.001 33.6 4.6 46 194-240 89-134 (478)
17 PRK07178 pyruvate carboxylase 34.2 70 0.0015 32.2 5.1 111 122-240 10-134 (472)
18 PF01927 Mut7-C: Mut7-C RNAse 33.9 30 0.00064 29.7 2.1 18 127-144 10-27 (147)
19 PRK08654 pyruvate carboxylase 32.3 79 0.0017 32.4 5.2 46 194-240 90-135 (499)
20 PRK08591 acetyl-CoA carboxylas 32.0 89 0.0019 30.8 5.3 44 194-238 90-133 (451)
21 cd00523 archeal_HJR Holliday j 31.1 1.7E+02 0.0036 24.9 6.1 49 126-185 9-57 (123)
22 TIGR01205 D_ala_D_alaTIGR D-al 30.7 2.3E+02 0.005 26.1 7.6 47 194-241 80-126 (315)
23 smart00832 C8 C8 domain. This 29.5 41 0.00089 25.9 2.0 63 175-242 9-73 (76)
24 PF13471 Transglut_core3: Tran 28.1 3.2E+02 0.0069 22.0 8.4 72 106-188 39-114 (117)
25 COG3349 Uncharacterized conser 28.1 65 0.0014 33.6 3.7 71 130-220 16-86 (485)
26 PF08003 Methyltransf_9: Prote 27.5 7.7 0.00017 38.1 -2.8 95 192-287 32-148 (315)
27 PRK14569 D-alanyl-alanine synt 27.1 2.9E+02 0.0064 25.8 7.7 46 194-240 73-118 (296)
28 PRK01966 ddl D-alanyl-alanine 26.8 2.6E+02 0.0057 26.6 7.4 47 194-241 98-144 (333)
29 PHA01753 Holliday junction res 25.6 2.4E+02 0.0052 24.2 6.1 50 125-185 10-59 (121)
30 PHA02119 hypothetical protein 24.7 47 0.001 26.5 1.6 32 124-165 54-85 (87)
31 PRK15068 tRNA mo(5)U34 methylt 23.6 18 0.00039 34.8 -1.1 52 193-245 40-96 (322)
32 PRK05586 biotin carboxylase; V 23.0 1.3E+02 0.0029 29.8 4.7 44 194-238 90-133 (447)
33 TIGR01369 CPSaseII_lrg carbamo 22.7 2.1E+02 0.0045 32.2 6.6 106 128-242 31-149 (1050)
34 PRK01372 ddl D-alanine--D-alan 22.1 2.8E+02 0.0062 25.5 6.5 47 195-242 74-120 (304)
35 PRK12413 phosphomethylpyrimidi 22.1 1.7E+02 0.0037 26.3 4.9 46 173-218 97-145 (253)
36 PRK11613 folP dihydropteroate 21.8 2.7E+02 0.0058 26.9 6.4 70 137-210 131-219 (282)
37 PF10759 DUF2587: Protein of u 21.8 48 0.001 29.8 1.2 14 11-24 48-61 (169)
38 COG5005 Mu-like prophage prote 20.2 1E+02 0.0022 27.1 2.9 61 192-254 9-70 (140)
39 PRK14571 D-alanyl-alanine synt 20.1 1.8E+02 0.0038 27.1 4.7 92 126-241 21-115 (299)
No 1
>PF04720 DUF506: Protein of unknown function (DUF506) ; InterPro: IPR006502 This family of uncharacterised plant proteins are defined by a region found toward the C terminus. This region is strongly conserved (greater than 30 % sequence identity between most pairs of members) but flanked by highly divergent regions including stretches of low-complexity sequence.
Probab=100.00 E-value=2.4e-70 Score=496.65 Aligned_cols=205 Identities=49% Similarity=0.814 Sum_probs=178.3
Q ss_pred HHHHHHHHHhcCcC-----CCCCCCCCCCc---c---ccccchhhHHHHHHHHhhhcCCCccHHHHHHHHHHHHHHHHHh
Q 022485 48 LSELVHDFLEHELS-----QAQPPGYDSDS---E---RVDTVADSTELIEDILKSTANGNVDLYRNLLLTHVLKAMEVFS 116 (296)
Q Consensus 48 La~mV~~FlE~~~~-----~~~~~~~~sd~---~---~~~~~~~~~~~~~~lL~~~~~~~~~~~e~~Lla~v~~a~e~~~ 116 (296)
|++||++|||++++ ..+++++++++ + ......++++++++||.+... .+..++.|+++|.++++...
T Consensus 1 Ls~mV~~FlE~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~e~l~~Ll~~~~~--~e~~~~~l~~~v~~~v~~~~ 78 (218)
T PF04720_consen 1 LSDMVQGFLEEEESSAPSFSFSGNGDDSSDEDSDSDSGSSESAEFWEELQELLQCISE--RESSRRRLLADVRRAVEEAK 78 (218)
T ss_pred CHHHHHHHhccCCcccccccccccCCCCccccccccCcccchHHHHHHHHHHHhcccc--ccchHHHHHHHHHHHHHHHH
Confidence 78999999999865 11111111111 1 222345678888888887655 56668889999999999886
Q ss_pred hh--hcchhhHHHHHHHHHHhcCCcceEeeecCCCCCCCCCCccceEEEEecCCCCCCcceEEEecccccceeeccCChH
Q 022485 117 RL--RQQKSVFRRQVMSLLRELGHNAAICKTKWSSSGGLTAGNYEYIDVVQSDSYTSTQNRYFVDLDFAAEFEIARPTSA 194 (296)
Q Consensus 117 ~~--~~~~~~~rr~v~~~Lr~~GydAaiCkS~W~~s~~~paG~heyIdV~~~~~~~~~~~r~IVD~dFr~qFeIArpT~~ 194 (296)
.. .++++|+|+.||++||.+||||+||||+|++++++|+|+||||||++.+.+.++.+|||||||||+||||||||++
T Consensus 79 ~~~~~~~~~~~rr~v~~~Lr~~GydAaiCkS~W~~s~~~p~g~yeyIdV~~~~~~~~~~~r~IVd~~fr~~FeiArpt~~ 158 (218)
T PF04720_consen 79 DEIKRGCRSCLRRSVMSRLRALGYDAAICKSRWESSGGIPAGEYEYIDVIVSGSSSGKSERYIVDPDFRSQFEIARPTPE 158 (218)
T ss_pred hhhcccchHHHHHHHHHHHHhCCCCEEEEEecCCCCCCCCCcceeEEEEEECCCCCCcceeEEEecchHhCeeecCCCHH
Confidence 43 2479999999999999999999999999999999999999999999987667788999999999999999999999
Q ss_pred HHHHHhhCCCceeeChhhHHHHHHHHHHHHHHhHHhCCCCCCCCCchhhHhhhhcCCCcc
Q 022485 195 YTRLSATLPRVYVGKGEELKRIVKVTCDAAKKSLKSKDLTLPPWRKNRYMQNKWFGPYKR 254 (296)
Q Consensus 195 Y~~ll~~lP~vFVG~~~rL~~iV~~mc~A~k~S~k~~Gm~lPPWRk~~ym~aKWl~~~~R 254 (296)
|++||+.||.||||+.++|++||++||+|||+|||++|||||||||++|||+|||+||+|
T Consensus 159 Y~~ll~~lP~vfVG~~~~L~~iV~~~c~a~k~s~k~~g~~lPPWR~~~ym~aKW~~~y~R 218 (218)
T PF04720_consen 159 YAALLAALPEVFVGTPERLKQIVRLMCDAAKRSFKERGMHLPPWRKNSYMQAKWLSPYKR 218 (218)
T ss_pred HHHHHHhCCCceEcCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCchHHHHHhccCCCCC
Confidence 999999999999999999999999999999999999999999999999999999999998
No 2
>TIGR01615 A_thal_3542 uncharacterized plant-specific domain TIGR01615. of a number of uncharacterized plant proteins. The domain is strongly conserved (greater than 30 % sequence identity between most pairs of members) but flanked by highly divergent regions including stretches of low-complexity sequence.
Probab=100.00 E-value=2.4e-63 Score=420.08 Aligned_cols=131 Identities=63% Similarity=1.113 Sum_probs=126.3
Q ss_pred HHHHHHHHHhcCCcceEeeecCCCCCCCCCCccceEEEEecCCCCCCcceEEEecccccceeeccCChHHHHHHhhCCCc
Q 022485 126 RRQVMSLLRELGHNAAICKTKWSSSGGLTAGNYEYIDVVQSDSYTSTQNRYFVDLDFAAEFEIARPTSAYTRLSATLPRV 205 (296)
Q Consensus 126 rr~v~~~Lr~~GydAaiCkS~W~~s~~~paG~heyIdV~~~~~~~~~~~r~IVD~dFr~qFeIArpT~~Y~~ll~~lP~v 205 (296)
||.||++||.+||||+||||+|++++++|+|+||||||++.+.+.+..+|||||+|||+||||||||++|+++|+.||.|
T Consensus 1 ~r~v~~~Lr~~Gy~AaiCkS~W~~s~~~p~G~yeyidV~~~~~~~~~~~R~iVd~dFr~~FeiARpt~~Y~~ll~~LP~v 80 (131)
T TIGR01615 1 RRIVMSLLRSLGYDAAICKSKWDSSGDIPAGKYEYIDVVDGDGSKKQEMRVIIDLDFRSEFEIARPTEEYKRLLESLPEV 80 (131)
T ss_pred ChhHHHHHHHCCCCeeeEEeecCCCCCCCCCceeeEEEEecCCCCCCcceEEEeccchhhceecCCCHHHHHHHHhCCcc
Confidence 57899999999999999999999999999999999999997655567789999999999999999999999999999999
Q ss_pred eeeChhhHHHHHHHHHHHHHHhHHhCCCCCCCCCchhhHhhhhcCCCcccc
Q 022485 206 YVGKGEELKRIVKVTCDAAKKSLKSKDLTLPPWRKNRYMQNKWFGPYKRTV 256 (296)
Q Consensus 206 FVG~~~rL~~iV~~mc~A~k~S~k~~Gm~lPPWRk~~ym~aKWl~~~~R~~ 256 (296)
|||+.++|++||++||+|||+|||++|||||||||++|||+|||+||+|++
T Consensus 81 FVG~~~rL~~iV~~mc~Aak~Slk~~gmhlPPWRk~~ym~aKWl~~~~R~~ 131 (131)
T TIGR01615 81 FVGTTERLRQLVRLMCDAAKKSLKKKGMPLPPWRKNRYMQSKWLGPYKRTS 131 (131)
T ss_pred eECCHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCchHHHHHhccCCccCCC
Confidence 999999999999999999999999999999999999999999999999985
No 3
>PF00797 Acetyltransf_2: N-acetyltransferase; InterPro: IPR001447 Arylamine N-acetyltransferase (NAT) is a cytosolic enzyme of approximately 30 kDa. It facilitates the transfer of an acetyl group from acetyl coenzyme A on to a wide range of arylamine, N-hydroxyarylamines and hydrazines. Acetylation of these compounds generally results in inactivation. NAT is found in many species from Mycobacteria (Mycobacterium tuberculosis, Mycobacterium smegmatis etc) to Homo sapiens (Human). It was the first enzyme to be observed to have polymorphic activity amongst human individuals. NAT is responsible for the inactivation of Isoniazid (a drug used to treat tuberculosis) in humans. The NAT protein has also been shown to be involved in the breakdown of folic acid. NAT catalyses the reaction: Acetyl-coA + arylamine = coA + N-acetylarylamine NAT is the target of a common genetic polymorphism of clinical relevance in humans. The N-acetylation polymorphism is determined by low or high NAT activity in liver. NAT has been implicated in the action and toxicity of amine-containing drugs, and in the susceptibility to cancer and systematic lupus erythematosus. Two highly similar human genes for NAT, termed NAT1 and NAT2, encode genetically invariant and variant NAT proteins, respectively. ; GO: 0016407 acetyltransferase activity, 0008152 metabolic process; PDB: 1W6F_A 1W5R_A 1GX3_D 2PQT_A 2IJA_A 1W4T_A 2BSZ_B 3D9W_B 3LTW_A 3LNB_A ....
Probab=94.17 E-value=0.13 Score=46.22 Aligned_cols=59 Identities=22% Similarity=0.359 Sum_probs=43.5
Q ss_pred chhhH--HHHHHHHHHhcCCcceEeeec-C-CCCCC-CCCCccceEEEEecCCCCCCcceEEEecccccc
Q 022485 121 QKSVF--RRQVMSLLRELGHNAAICKTK-W-SSSGG-LTAGNYEYIDVVQSDSYTSTQNRYFVDLDFAAE 185 (296)
Q Consensus 121 ~~~~~--rr~v~~~Lr~~GydAaiCkS~-W-~~s~~-~paG~heyIdV~~~~~~~~~~~r~IVD~dFr~q 185 (296)
.+-|+ -..+...|+++||++.+|.++ + ..... .+.+.|--|.|.++ +.+|+||+.|=..
T Consensus 46 GG~C~elN~lf~~lL~~lGf~v~~~~arv~~~~~~~~~~~~~H~~liV~~~------~~~ylvDvGfG~~ 109 (240)
T PF00797_consen 46 GGYCFELNGLFYWLLRELGFDVTLVSARVYSPGGPDYWPPRTHLVLIVTLD------GERYLVDVGFGGP 109 (240)
T ss_dssp -B-HHHHHHHHHHHHHHCT-EEEEEEEEEETTTTTCCSSSEEEEEEEEEET------TEEEEE-SSSTTC
T ss_pred CeEhHHHHHHHHHHHHHCCCeEEEEEEEEEeCCCCCCCCCCceEEEEEEEC------CEEEEEeccCCCc
Confidence 34554 556789999999999999988 3 33332 46789999999986 5799999999876
No 4
>PRK15047 N-hydroxyarylamine O-acetyltransferase; Provisional
Probab=91.62 E-value=0.5 Score=45.03 Aligned_cols=54 Identities=20% Similarity=0.289 Sum_probs=43.2
Q ss_pred HHHHHHHHHhcCCcceEeeec--CCCCCCCCCCccceEEEEecCCCCCCcceEEEecccccc
Q 022485 126 RRQVMSLLRELGHNAAICKTK--WSSSGGLTAGNYEYIDVVQSDSYTSTQNRYFVDLDFAAE 185 (296)
Q Consensus 126 rr~v~~~Lr~~GydAaiCkS~--W~~s~~~paG~heyIdV~~~~~~~~~~~r~IVD~dFr~q 185 (296)
-..+...|+++||++..+..+ |...+..++..|-.+.|.+. +++|+||+.|-+.
T Consensus 73 N~Lf~~~L~~LGF~v~~~~arV~~~~~~~~~~~tH~~l~V~i~------~~~yLvDVGFG~~ 128 (281)
T PRK15047 73 NGLFERVLRELGFNVRSLLGRVVLSNPPALPPRTHRLLLVELE------GEKWIADVGFGGQ 128 (281)
T ss_pred HHHHHHHHHHcCCcEEEEEEEEEecCCCCCCCcCcEEEEEEEC------CeeEEEEecCCCC
Confidence 456789999999999988777 43334446779999999986 6799999999863
No 5
>PF08742 C8: C8 domain; InterPro: IPR014853 The proteins in this entry contained a domain rich in positionally conserved cysteine residues. Most proteins contains 7 or 8 cysteine residues. The domain is found in disease-related proteins including von Willebrand factor, Alpha tectorin, Zonadhesin and Mucin. It is often found on proteins containing IPR001846 from INTERPRO and IPR002919 from INTERPRO.
Probab=79.51 E-value=1.7 Score=32.53 Aligned_cols=62 Identities=15% Similarity=0.299 Sum_probs=43.5
Q ss_pred EEEecccccceeeccCChHHHHHHhhCCCceeeChhhHHHHHHHHHHHHHHhHHhCCCCCCCCCchh
Q 022485 176 YFVDLDFAAEFEIARPTSAYTRLSATLPRVYVGKGEELKRIVKVTCDAAKKSLKSKDLTLPPWRKNR 242 (296)
Q Consensus 176 ~IVD~dFr~qFeIArpT~~Y~~ll~~lP~vFVG~~~rL~~iV~~mc~A~k~S~k~~Gm~lPPWRk~~ 242 (296)
+|.|+.|+.=+.+.-|++-|+.-+..+=. +-|.. ..+-..|.+-++.+ +..|..+++||+..
T Consensus 10 ~l~~~~F~~C~~~v~~~~f~~~C~~d~C~-~~~~~---~~~C~~l~~Ya~~C-~~~g~~~~~WR~~~ 71 (74)
T PF08742_consen 10 ILLDPEFAPCHSVVDPDPFYEACVYDMCA-CPGSQ---QCLCEALSAYAREC-QRAGICVGDWRTPT 71 (74)
T ss_pred HHcCchhhhhcccCccHHHHHHHHHHHcC-CCCCc---chhhHHHHHHHHHH-HHCcCCCCCCCCcC
Confidence 45688899999999999999998876633 22222 33344444445555 67899999999873
No 6
>PF14475 Mso1_Sec1_bdg: Sec1-binding region of Mso1
Probab=74.46 E-value=3.3 Score=29.33 Aligned_cols=20 Identities=20% Similarity=0.385 Sum_probs=18.9
Q ss_pred HHHHHHHHhHHhCCCCCCCC
Q 022485 219 VTCDAAKKSLKSKDLTLPPW 238 (296)
Q Consensus 219 ~mc~A~k~S~k~~Gm~lPPW 238 (296)
++|.+++.-.+++|.++|+|
T Consensus 21 ~v~r~l~~yY~~k~~~~P~W 40 (41)
T PF14475_consen 21 HVHRVLRKYYTEKGRPFPGW 40 (41)
T ss_pred HHHHHHHHHHHHcCCCCCCc
Confidence 68999999999999999999
No 7
>smart00460 TGc Transglutaminase/protease-like homologues. Transglutaminases are enzymes that establish covalent links between proteins. A subset of transglutaminase homologues appear to catalyse the reverse reaction, the hydrolysis of peptide bonds. Proteins with this domain are both extracellular and intracellular, and it is likely that the eukaryotic intracellular proteins are involved in signalling events.
Probab=69.33 E-value=25 Score=24.94 Aligned_cols=51 Identities=20% Similarity=0.121 Sum_probs=37.2
Q ss_pred HHHHHHHHHHhcCCcceEeeec-CCCCCC----CCCCccceEEEEecCCCCCCcceEEEecc
Q 022485 125 FRRQVMSLLRELGHNAAICKTK-WSSSGG----LTAGNYEYIDVVQSDSYTSTQNRYFVDLD 181 (296)
Q Consensus 125 ~rr~v~~~Lr~~GydAaiCkS~-W~~s~~----~paG~heyIdV~~~~~~~~~~~r~IVD~d 181 (296)
+-..++..||.+|+.|.++..- +..... -+...|.++.|-.+ +.-+.+||.
T Consensus 12 ~a~l~~~llr~~GIpar~v~g~~~~~~~~~~~~~~~~~H~W~ev~~~------~~W~~~D~~ 67 (68)
T smart00460 12 FAALFVALLRSLGIPARVVSGYLKAPDTIGGLRSIWEAHAWAEVYLE------GGWVPVDPT 67 (68)
T ss_pred HHHHHHHHHHHCCCCeEEEeeeecCCCCCcccccCCCcEEEEEEEEC------CCeEEEeCC
Confidence 3456788999999999999763 322211 23578999999875 578888885
No 8
>PF01841 Transglut_core: Transglutaminase-like superfamily; InterPro: IPR002931 This domain is found in many proteins known to have transglutaminase activity, i.e. which cross-link proteins through an acyl-transfer reaction between the gamma-carboxamide group of peptide-bound glutamine and the epsilon-amino group of peptide-bound lysine, resulting in a epsilon-(gamma-glutamyl)lysine isopeptide bond. Tranglutaminases have been found in a diverse range of species, from bacteria through to mammals. The enzymes require calcium binding and their activity leads to post-translational modification of proteins through acyl-transfer reactions, involving peptidyl glutamine residues as acyl donors and a variety of primary amines as acyl acceptors, with the generation of proteinase resistant isopeptide bonds []. Sequence conservation in this superfamily primarily involves three motifs that centre around conserved cysteine, histidine, and aspartate residues that form the catalytic triad in the structurally characterised transglutaminase, the human blood clotting factor XIIIa' []. On the basis of the experimentally demonstrated activity of the Methanobacterium phage psiM2 pseudomurein endoisopeptidase [], it is proposed that many, if not all, microbial homologs of the transglutaminases are proteases and that the eukaryotic transglutaminases have evolved from an ancestral protease []. A subunit of plasma Factor XIII revealed that each Factor XIIIA subunit is composed of four domains (termed N-terminal beta-sandwich, core domain (containing the catalytic and the regulatory sites), and C-terminal beta-barrels 1 and 2) and that two monomers assemble into the native dimer through the surfaces in domains 1 and 2, in opposite orientation. This organisation in four domains is highly conserved during evolution among transglutaminase isoforms [].; PDB: 2F4M_A 2F4O_A 1GGY_B 1FIE_B 1GGU_B 1GGT_B 1F13_A 1QRK_B 1EVU_A 1EX0_B ....
Probab=65.29 E-value=18 Score=27.93 Aligned_cols=51 Identities=18% Similarity=0.174 Sum_probs=34.6
Q ss_pred HHHHHHHHHHhcCCcceEeeecCCCCC------CCCCCccceEEEEecCCCCCCcceEEEec
Q 022485 125 FRRQVMSLLRELGHNAAICKTKWSSSG------GLTAGNYEYIDVVQSDSYTSTQNRYFVDL 180 (296)
Q Consensus 125 ~rr~v~~~Lr~~GydAaiCkS~W~~s~------~~paG~heyIdV~~~~~~~~~~~r~IVD~ 180 (296)
+-..++..||++|+.|.+......... ......|-...|-++ .+.-+.+||
T Consensus 57 ~a~l~~allr~~Gipar~v~g~~~~~~~~~~~~~~~~~~H~w~ev~~~-----~~~W~~~Dp 113 (113)
T PF01841_consen 57 YASLFVALLRALGIPARVVSGYVKGPDPDGDYSVDGNDNHAWVEVYLP-----GGGWIPLDP 113 (113)
T ss_dssp HHHHHHHHHHHHT--EEEEEEEEEECSSTTCTSTSSEEEEEEEEEEET-----TTEEEEEET
T ss_pred HHHHHHHHHhhCCCceEEEEEEcCCccccccccCCCCCCEEEEEEEEc-----CCcEEEcCC
Confidence 455678999999999988876553321 233457999999884 256888887
No 9
>COG2162 NhoA Arylamine N-acetyltransferase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=59.76 E-value=25 Score=34.01 Aligned_cols=58 Identities=21% Similarity=0.337 Sum_probs=47.1
Q ss_pred HHHHHHHHHhcCCcceE--eeecCCCCCC-CCCCccceEEEEecCCCCCCcceEEEecccccceeec
Q 022485 126 RRQVMSLLRELGHNAAI--CKTKWSSSGG-LTAGNYEYIDVVQSDSYTSTQNRYFVDLDFAAEFEIA 189 (296)
Q Consensus 126 rr~v~~~Lr~~GydAai--CkS~W~~s~~-~paG~heyIdV~~~~~~~~~~~r~IVD~dFr~qFeIA 189 (296)
-..+...|+++||+... |.=.|...++ .|.+.|.-|-|.+. ++.||+|+.|=.+--.|
T Consensus 74 Nglf~~vL~~lGF~v~~l~arV~~g~~~~a~~~~tH~~L~v~~~------~~~~l~DvGFGg~~l~A 134 (275)
T COG2162 74 NGLFGRVLRELGFNVRLLLARVVWGLAPDALPPRTHRLLLVELE------GETWLADVGFGGQTLTA 134 (275)
T ss_pred hhHHHHHHHHcCCcceeeEEEEEecCCCCCCCcccceEEEEEec------CceeEEecCCCCCCcCC
Confidence 44667889999999987 5556987554 55799999999997 57999999999777677
No 10
>PRK14675 hypothetical protein; Provisional
Probab=52.35 E-value=64 Score=27.36 Aligned_cols=82 Identities=21% Similarity=0.244 Sum_probs=52.7
Q ss_pred HHHHHHHhcCCcceEeeecCCCCCCCCCCccceEEEEecCCCCCCcceEEEecccccceeeccCChHHHHHHhhCCCcee
Q 022485 128 QVMSLLRELGHNAAICKTKWSSSGGLTAGNYEYIDVVQSDSYTSTQNRYFVDLDFAAEFEIARPTSAYTRLSATLPRVYV 207 (296)
Q Consensus 128 ~v~~~Lr~~GydAaiCkS~W~~s~~~paG~heyIdV~~~~~~~~~~~r~IVD~dFr~qFeIArpT~~Y~~ll~~lP~vFV 207 (296)
..+..|+..||. |..-.|.. + |-.||++... ++.-++||+-.|..-..+.|-.. |
T Consensus 17 ~A~~~L~~~G~~--il~rn~r~----~---~GEIDlIa~d----~~~lvFVEVK~R~~~~~g~~~~a------------V 71 (125)
T PRK14675 17 IAVTYLKGLRYK--IVERNFRC----R---CGEIDIIARD----GKTLVFVEVKTRKNYAYGVPQLA------------V 71 (125)
T ss_pred HHHHHHHHCCCE--EEEEEEeC----C---CCeEEEEEEe----CCEEEEEEEEeccCCCCcChHHc------------C
Confidence 557899999997 55667844 2 6679999852 35899999999876544433211 2
Q ss_pred eChhhHHHHHHHHHHHHHHhHHhCCCCCCCCC
Q 022485 208 GKGEELKRIVKVTCDAAKKSLKSKDLTLPPWR 239 (296)
Q Consensus 208 G~~~rL~~iV~~mc~A~k~S~k~~Gm~lPPWR 239 (296)
.. .+.+ -|+.+|+.-|.++++.-.|+|
T Consensus 72 ~~-~K~~----ri~~~A~~yL~~~~~~~~~~R 98 (125)
T PRK14675 72 TP-FKQR----QISKAALTWLAKKKLLDAEAR 98 (125)
T ss_pred CH-HHHH----HHHHHHHHHHHHCCCCCCCEE
Confidence 11 1111 566777777888776334454
No 11
>PF08774 VRR_NUC: VRR-NUC domain; InterPro: IPR014883 This entry contains proteins with the VRR-NUC domain. It is associated with members of the PD-(D/E)XK nuclease superfamily, which include the type III restriction modification enzymes, for example StyLTI: (P40815 from SWISSPROT).; GO: 0016788 hydrolase activity, acting on ester bonds
Probab=52.34 E-value=16 Score=28.77 Aligned_cols=27 Identities=26% Similarity=0.422 Sum_probs=22.0
Q ss_pred chhhHHHHHHHHHHhcCCcceEeeecC
Q 022485 121 QKSVFRRQVMSLLRELGHNAAICKTKW 147 (296)
Q Consensus 121 ~~~~~rr~v~~~Lr~~GydAaiCkS~W 147 (296)
.-+...+...+.|+..|+++.||.+.|
T Consensus 74 ~ls~~Q~~~~~~l~~~G~~v~V~~~~~ 100 (100)
T PF08774_consen 74 RLSPNQKEWIDKLREAGFRVAVCRSVE 100 (100)
T ss_pred CcCHHHHHHHHHHHHCCCEEEEEEccC
Confidence 334456677799999999999999987
No 12
>PF09551 Spore_II_R: Stage II sporulation protein R (spore_II_R); InterPro: IPR014202 This entry is designated stage II sporulation protein R. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species. SpoIIR is a signalling protein that links the activation of sigma E to the transcriptional activity of sigma F during sporulation [, ].
Probab=43.67 E-value=1.5e+02 Score=25.68 Aligned_cols=46 Identities=20% Similarity=0.179 Sum_probs=31.2
Q ss_pred hhhHHHHHHHHHHhcCCcceEe--ee------cCCCCCCCCCCccceEEEEecC
Q 022485 122 KSVFRRQVMSLLRELGHNAAIC--KT------KWSSSGGLTAGNYEYIDVVQSD 167 (296)
Q Consensus 122 ~~~~rr~v~~~Lr~~GydAaiC--kS------~W~~s~~~paG~heyIdV~~~~ 167 (296)
...|....-+.|.+.||+-.+- -. |+=++--+|+|+||-+-|+++.
T Consensus 54 ~~~Ie~~A~~~l~~~G~~y~v~v~~~~~~FPtK~YG~~~~PaG~YeAlrI~IG~ 107 (130)
T PF09551_consen 54 LPEIEQIAEEVLAEEGYDYPVKVELGRFYFPTKTYGDIVLPAGEYEALRITIGE 107 (130)
T ss_pred HHHHHHHHHHHHHHhCCCCcEEEEEEeeeCCCceECCEeccCCceEEEEEEecC
Confidence 4446666778899999764433 22 2223445799999999999873
No 13
>PRK08462 biotin carboxylase; Validated
Probab=39.55 E-value=59 Score=32.08 Aligned_cols=113 Identities=12% Similarity=0.145 Sum_probs=62.8
Q ss_pred hhhHHHHHHHHHHhcCCcceEeeecCCCCCCCCCCccceEEEEecCCCCCCcceE-----EEecccccceeeccCC----
Q 022485 122 KSVFRRQVMSLLRELGHNAAICKTKWSSSGGLTAGNYEYIDVVQSDSYTSTQNRY-----FVDLDFAAEFEIARPT---- 192 (296)
Q Consensus 122 ~~~~rr~v~~~Lr~~GydAaiCkS~W~~s~~~paG~heyIdV~~~~~~~~~~~r~-----IVD~dFr~qFeIArpT---- 192 (296)
+..+.-.++..++++||....|-+.-+....+-.--++++.+-.. ...+.| |+++--+.+....-|+
T Consensus 12 ~g~~~~~~~~~~~~~G~~~v~~~~~~d~~~~~~~~ad~~~~~~~~----~~~~~y~~~~~l~~~~~~~~~D~i~pg~g~l 87 (445)
T PRK08462 12 RGEIALRAIRTIQEMGKEAIAIYSTADKDALYLKYADAKICIGGA----KSSESYLNIPAIISAAEIFEADAIFPGYGFL 87 (445)
T ss_pred CcHHHHHHHHHHHHcCCCEEEEechhhcCCchhhhCCEEEEeCCC----chhcccCCHHHHHHHHHHcCCCEEEECCCcc
Confidence 344566888999999999999976665432111112333333100 001122 2333223333333333
Q ss_pred ---hHHHHHHhhCCCceeeChhhHHHHHHHHHHHHHHhHHhCCCCCCCCC
Q 022485 193 ---SAYTRLSATLPRVYVGKGEELKRIVKVTCDAAKKSLKSKDLTLPPWR 239 (296)
Q Consensus 193 ---~~Y~~ll~~lP~vFVG~~~rL~~iV~~mc~A~k~S~k~~Gm~lPPWR 239 (296)
.....+++.+--.|+|...+...+..- =..+++-|++.|.++|||.
T Consensus 88 se~~~~a~~~e~~Gi~~~g~~~~~~~~~~d-K~~~r~~l~~~gIp~pp~~ 136 (445)
T PRK08462 88 SENQNFVEICSHHNIKFIGPSVEVMALMSD-KSKAKEVMKRAGVPVIPGS 136 (445)
T ss_pred ccCHHHHHHHHHCCCeEECcCHHHHHHhCC-HHHHHHHHHHCCCCCCCCc
Confidence 334456777777788877654433311 1367888999999999985
No 14
>PF15645 Tox-PLDMTX: Dermonecrotoxin of the Papain-like fold
Probab=39.21 E-value=1.1e+02 Score=26.71 Aligned_cols=72 Identities=13% Similarity=0.149 Sum_probs=48.0
Q ss_pred HHHHHHHHHHhcCC-cceEee-ecCCCCCCCCCCccceEEEEecCCCCCCcceEEEecccccceeeccCChHHHHHHhhC
Q 022485 125 FRRQVMSLLRELGH-NAAICK-TKWSSSGGLTAGNYEYIDVVQSDSYTSTQNRYFVDLDFAAEFEIARPTSAYTRLSATL 202 (296)
Q Consensus 125 ~rr~v~~~Lr~~Gy-dAaiCk-S~W~~s~~~paG~heyIdV~~~~~~~~~~~r~IVD~dFr~qFeIArpT~~Y~~ll~~l 202 (296)
..+.|+..||..|| |..+.. .-|+.......-+|-=+.+... |+-||+||--. ||.=--.
T Consensus 10 a~~~v~~~lk~~g~~~~k~~~l~~W~~~~~~~p~NH~vv~~k~~------g~eyV~D~Ta~-QF~~~~~----------- 71 (135)
T PF15645_consen 10 AMKEVADFLKDKGYEDIKYRGLLIWENANDDSPTNHFVVVAKKN------GKEYVFDPTAH-QFSNKGN----------- 71 (135)
T ss_pred HHHHHHHHHHhCCCCcceeeEEEEecCCCccCCcceEEEEEEEC------CEEEEEeCcHH-HhhccCC-----------
Confidence 36789999999999 433322 2397766666777865555554 79999999632 4432111
Q ss_pred C-CceeeChhhHH
Q 022485 203 P-RVYVGKGEELK 214 (296)
Q Consensus 203 P-~vFVG~~~rL~ 214 (296)
+ ..|+|+.+.=.
T Consensus 72 ~~~p~i~~~~~W~ 84 (135)
T PF15645_consen 72 DNGPIILPEDAWK 84 (135)
T ss_pred CCCceEecHHHHH
Confidence 2 68899888655
No 15
>TIGR00514 accC acetyl-CoA carboxylase, biotin carboxylase subunit. This model represents the biotin carboxylase subunit found usually as a component of acetyl-CoA carboxylase. Acetyl-CoA carboxylase is designated EC 6.4.1.2 and this component, biotin carboxylase, has its own designation, EC 6.3.4.14. Homologous domains are found in eukaryotic forms of acetyl-CoA carboxylase and in a number of other carboxylases (e.g. pyruvate carboxylase), but seed members and trusted cutoff are selected so as to exclude these. In some systems, the biotin carboxyl carrier protein and this protein (biotin carboxylase) may be shared by different carboxyltransferases. However, this model is not intended to identify the biotin carboxylase domain of propionyl-coA carboxylase. The model should hit the full length of proteins, except for chloroplast transit peptides in plants. If it hits a domain only of a longer protein, there may be a problem with the identification.
Probab=39.00 E-value=50 Score=32.77 Aligned_cols=116 Identities=10% Similarity=0.085 Sum_probs=62.3
Q ss_pred hhhHHHHHHHHHHhcCCcceEeeecCCCC-CCCCCCccceEEEEecCCC-CCCcceEEEecccccceeeccCC-------
Q 022485 122 KSVFRRQVMSLLRELGHNAAICKTKWSSS-GGLTAGNYEYIDVVQSDSY-TSTQNRYFVDLDFAAEFEIARPT------- 192 (296)
Q Consensus 122 ~~~~rr~v~~~Lr~~GydAaiCkS~W~~s-~~~paG~heyIdV~~~~~~-~~~~~r~IVD~dFr~qFeIArpT------- 192 (296)
+..+-..++..++++||...+|-+.-+.. ..+. --++++.+.-.... .-....-|+++-++.+..+--|+
T Consensus 10 ~g~~~~~~~~aa~~lG~~vv~~~~~~d~~a~~~~-~aD~~~~~~~~~~~~~y~d~~~l~~~a~~~~id~I~pg~g~~se~ 88 (449)
T TIGR00514 10 RGEIALRILRACKELGIKTVAVHSTADRDALHVL-LADEAVCIGPAPSAKSYLNIPNIISAAEITGADAIHPGYGFLSEN 88 (449)
T ss_pred CCHHHHHHHHHHHHcCCeEEEEEChhhhcccccc-cCCEEEEcCCCCchhchhCHHHHHHHHHHhCCCEEEeCCCccccC
Confidence 34456788999999999999996543221 2221 12333333100000 00000113333333333333222
Q ss_pred hHHHHHHhhCCCceeeChhhHHHHHHHHHHHHHHhHHhCCCCCCCCC
Q 022485 193 SAYTRLSATLPRVYVGKGEELKRIVKVTCDAAKKSLKSKDLTLPPWR 239 (296)
Q Consensus 193 ~~Y~~ll~~lP~vFVG~~~rL~~iV~~mc~A~k~S~k~~Gm~lPPWR 239 (296)
..+..+++.+-..|+|...+.-.+..= =..+++-|++.|.+.|||-
T Consensus 89 ~~~a~~~e~~Gi~~~g~~~~~~~~~~D-K~~~r~~l~~~gip~pp~~ 134 (449)
T TIGR00514 89 ANFAEQCERSGFTFIGPSAESIRLMGD-KVSAIETMKKAGVPCVPGS 134 (449)
T ss_pred HHHHHHHHHCCCcEECcCHHHHHHhCC-HHHHHHHHHHCCCCCCCCc
Confidence 225667788877788876554433321 1357888999999999984
No 16
>PRK08463 acetyl-CoA carboxylase subunit A; Validated
Probab=38.53 E-value=46 Score=33.63 Aligned_cols=46 Identities=13% Similarity=0.288 Sum_probs=33.5
Q ss_pred HHHHHHhhCCCceeeChhhHHHHHHHHHHHHHHhHHhCCCCCCCCCc
Q 022485 194 AYTRLSATLPRVYVGKGEELKRIVKVTCDAAKKSLKSKDLTLPPWRK 240 (296)
Q Consensus 194 ~Y~~ll~~lP~vFVG~~~rL~~iV~~mc~A~k~S~k~~Gm~lPPWRk 240 (296)
.....+..+--.|+|+..+.-.+..-= ..+|+-|++.|.++|||-.
T Consensus 89 ~~a~~~e~~Gi~~iGps~~~i~~~~DK-~~~k~~l~~~gIpvpp~~~ 134 (478)
T PRK08463 89 EFAKAVEDAGIIFIGPKSEVIRKMGNK-NIARYLMKKNGIPIVPGTE 134 (478)
T ss_pred HHHHHHHHCCCceecCCHHHHHhhCcH-HHHHHHHHHcCCCCCCCcc
Confidence 356667788888899866544444332 5788889999999999854
No 17
>PRK07178 pyruvate carboxylase subunit A; Validated
Probab=34.16 E-value=70 Score=32.23 Aligned_cols=111 Identities=11% Similarity=0.170 Sum_probs=58.5
Q ss_pred hhhHHHHHHHHHHhcCCcceEeeecCCCC-CCCCCCc----------cceEEE--EecCCCCCCc-ceEEEeccccccee
Q 022485 122 KSVFRRQVMSLLRELGHNAAICKTKWSSS-GGLTAGN----------YEYIDV--VQSDSYTSTQ-NRYFVDLDFAAEFE 187 (296)
Q Consensus 122 ~~~~rr~v~~~Lr~~GydAaiCkS~W~~s-~~~paG~----------heyIdV--~~~~~~~~~~-~r~IVD~dFr~qFe 187 (296)
+..+-..++..++++||...++-+.-+.. ..+..-+ ..|+|+ +..- ....+ .-++--..|-++
T Consensus 10 ~geia~~ii~a~~~~Gi~~v~v~~~~d~~a~~~~~aD~~~~i~~~~~~~y~d~~~i~~~-a~~~~~D~I~pg~g~lse-- 86 (472)
T PRK07178 10 RGEIAVRIVRACAEMGIRSVAIYSEADRHALHVKRADEAYSIGADPLAGYLNPRRLVNL-AVETGCDALHPGYGFLSE-- 86 (472)
T ss_pred CcHHHHHHHHHHHHcCCeEEEEeCCCccCCccHhhCCEEEEcCCCchhhhcCHHHHHHH-HHHHCCCEEEeCCCCccc--
Confidence 34456688999999999999987764432 1111011 123331 0000 00001 111111111111
Q ss_pred eccCChHHHHHHhhCCCceeeChhhHHHHHHHHHHHHHHhHHhCCCCCCCCCc
Q 022485 188 IARPTSAYTRLSATLPRVYVGKGEELKRIVKVTCDAAKKSLKSKDLTLPPWRK 240 (296)
Q Consensus 188 IArpT~~Y~~ll~~lP~vFVG~~~rL~~iV~~mc~A~k~S~k~~Gm~lPPWRk 240 (296)
......+++.+-..|+|+..+.-.+..= =..+|+-|++.|.++|||..
T Consensus 87 ----~~~~a~~~e~~Gi~~igps~~~i~~~~D-K~~~r~~l~~~GIp~pp~~~ 134 (472)
T PRK07178 87 ----NAELAEICAERGIKFIGPSAEVIRRMGD-KTEARRAMIKAGVPVTPGSE 134 (472)
T ss_pred ----CHHHHHHHHHcCCCccCCCHHHHHHhcC-HHHHHHHHHHCCCCCCCCcC
Confidence 1234566777777788886654433321 23677889999999999963
No 18
>PF01927 Mut7-C: Mut7-C RNAse domain; InterPro: IPR002782 This prokaryotic family of proteins have no known function. The proteins contain four conserved cysteines that may be involved in metal binding or disulphide bridges.
Probab=33.94 E-value=30 Score=29.65 Aligned_cols=18 Identities=22% Similarity=0.348 Sum_probs=16.0
Q ss_pred HHHHHHHHhcCCcceEee
Q 022485 127 RQVMSLLRELGHNAAICK 144 (296)
Q Consensus 127 r~v~~~Lr~~GydAaiCk 144 (296)
..|+++||.+|||+..+.
T Consensus 10 ~~Lar~LR~lG~Dt~~~~ 27 (147)
T PF01927_consen 10 GRLARWLRLLGYDTLYSR 27 (147)
T ss_pred HHHHHHHHHCCCcEEEeC
Confidence 579999999999999775
No 19
>PRK08654 pyruvate carboxylase subunit A; Validated
Probab=32.30 E-value=79 Score=32.42 Aligned_cols=46 Identities=15% Similarity=0.244 Sum_probs=31.8
Q ss_pred HHHHHHhhCCCceeeChhhHHHHHHHHHHHHHHhHHhCCCCCCCCCc
Q 022485 194 AYTRLSATLPRVYVGKGEELKRIVKVTCDAAKKSLKSKDLTLPPWRK 240 (296)
Q Consensus 194 ~Y~~ll~~lP~vFVG~~~rL~~iV~~mc~A~k~S~k~~Gm~lPPWRk 240 (296)
...+.++.+--.|+|+....-.+..- =..+|+-|++.|.++|||..
T Consensus 90 ~~a~~~e~~gi~~iGps~~~i~~~~D-K~~~k~~l~~~GVpv~p~~~ 135 (499)
T PRK08654 90 EFAKACEKAGIVFIGPSSDVIEAMGS-KINAKKLMKKAGVPVLPGTE 135 (499)
T ss_pred HHHHHHHHCCCcEECCCHHHHHHhCC-HHHHHHHHHHcCcCCCCCcC
Confidence 45567777778899976543333211 12478889999999999974
No 20
>PRK08591 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=31.96 E-value=89 Score=30.81 Aligned_cols=44 Identities=16% Similarity=0.264 Sum_probs=31.8
Q ss_pred HHHHHHhhCCCceeeChhhHHHHHHHHHHHHHHhHHhCCCCCCCC
Q 022485 194 AYTRLSATLPRVYVGKGEELKRIVKVTCDAAKKSLKSKDLTLPPW 238 (296)
Q Consensus 194 ~Y~~ll~~lP~vFVG~~~rL~~iV~~mc~A~k~S~k~~Gm~lPPW 238 (296)
.+..+++.+-..|+|+..+...+..= =..+++-|++.|.+.|||
T Consensus 90 ~~~~~~e~~gi~~~g~~~~~~~~~~D-K~~~r~~l~~~gIp~pp~ 133 (451)
T PRK08591 90 DFAEICEDSGFTFIGPSAETIRLMGD-KVTAKATMKKAGVPVVPG 133 (451)
T ss_pred HHHHHHHHCCCceECcCHHHHHHhcC-HHHHHHHHHHcCCCCCCC
Confidence 46677888887788876554443322 235788999999999998
No 21
>cd00523 archeal_HJR Holliday junction resolvases (HJRs) are endonucleases that specifically resolve Holliday junction DNA intermediates during homologous recombination. HJR's occur in archaea, bacteria, and in the mitochondria of certain eukaryotes, however this CD includes only the archeal HJR's. The bacterial and archeal HJRs perform a similar function but differ in both sequence and structure. Structural similarity does however, exist between the archeal HJRs and type II restriction endonucleases, such as EcoRV, BglII, and Fok, and this similarity includes their active site configurations.
Probab=31.09 E-value=1.7e+02 Score=24.88 Aligned_cols=49 Identities=18% Similarity=0.342 Sum_probs=35.5
Q ss_pred HHHHHHHHHhcCCcceEeeecCCCCCCCCCCccceEEEEecCCCCCCcceEEEecccccc
Q 022485 126 RRQVMSLLRELGHNAAICKTKWSSSGGLTAGNYEYIDVVQSDSYTSTQNRYFVDLDFAAE 185 (296)
Q Consensus 126 rr~v~~~Lr~~GydAaiCkS~W~~s~~~paG~heyIdV~~~~~~~~~~~r~IVD~dFr~q 185 (296)
=+.+++.|.+.||..- ++..++ +|.+-.||++... ++.-++||+-.|..
T Consensus 9 E~~a~~~L~~~G~~vl----R~~~sG---~~~~~eiDIIA~~----~~~lvfVEVK~r~~ 57 (123)
T cd00523 9 ERELVKILEEKGFAVV----RAPGSG---GGPRPLPDIVAGN----GGTYLAIEVKSTKK 57 (123)
T ss_pred HHHHHHHHHhCCCEEE----EEcCCC---CCCCCceeEEEec----CCEEEEEEEEecCC
Confidence 5678999999999877 332232 2336789999852 36789999998865
No 22
>TIGR01205 D_ala_D_alaTIGR D-alanine--D-alanine ligase. but a number of antibiotic resistance proteins score above the trusted cutoff of this model.
Probab=30.68 E-value=2.3e+02 Score=26.14 Aligned_cols=47 Identities=17% Similarity=0.084 Sum_probs=31.8
Q ss_pred HHHHHHhhCCCceeeChhhHHHHHHHHHHHHHHhHHhCCCCCCCCCch
Q 022485 194 AYTRLSATLPRVYVGKGEELKRIVKVTCDAAKKSLKSKDLTLPPWRKN 241 (296)
Q Consensus 194 ~Y~~ll~~lP~vFVG~~~rL~~iV~~mc~A~k~S~k~~Gm~lPPWRk~ 241 (296)
..+++++.+---|+|.......+.. ==..+++-|++.|.++|||...
T Consensus 80 ~~~~~le~~gip~~g~~~~~~~~~~-dK~~~~~~l~~~gip~p~~~~~ 126 (315)
T TIGR01205 80 TIQGLLELMGIPYTGSGVLASALSM-DKLLTKLLWKALGLPTPDYIVL 126 (315)
T ss_pred HHHHHHHHcCCCccCCCHHHHHHHH-CHHHHHHHHHHCCCCCCCEEEE
Confidence 4567888887788887533332211 1125778899999999999854
No 23
>smart00832 C8 C8 domain. This domain contains 8 conserved cysteine residues, but this family only contains 7 of them to overlaps with other domains. It is found in disease-related proteins including von Willebrand factor, Alpha tectorin, Zonadhesin and Mucin.
Probab=29.50 E-value=41 Score=25.89 Aligned_cols=63 Identities=17% Similarity=0.239 Sum_probs=41.1
Q ss_pred eEEEecc--cccceeeccCChHHHHHHhhCCCceeeChhhHHHHHHHHHHHHHHhHHhCCCCCCCCCchh
Q 022485 175 RYFVDLD--FAAEFEIARPTSAYTRLSATLPRVYVGKGEELKRIVKVTCDAAKKSLKSKDLTLPPWRKNR 242 (296)
Q Consensus 175 r~IVD~d--Fr~qFeIArpT~~Y~~ll~~lP~vFVG~~~rL~~iV~~mc~A~k~S~k~~Gm~lPPWRk~~ 242 (296)
.+|.+++ |+.--.+--|++-|+..+..+=.. -|..+.|-+.++ .-++.+. +.|..+.+||+..
T Consensus 9 ~~l~~~~g~F~~Ch~~V~p~~f~~~Cv~D~C~~-~~~~~~lC~al~---aYa~aC~-~~Gv~v~~WR~~~ 73 (76)
T smart00832 9 GILLSPRGPFAACHSVVDPEPFFENCVYDTCAC-GGDCECLCDALA---AYAAACA-EAGVCISPWRTPT 73 (76)
T ss_pred HhhcCCCCChHHHhCcCChHHHHHHHHHHHhCC-CCCCcccCHHHH---HHHHHHH-HCcCcCCCCCCCC
Confidence 3566663 777667778999999988766332 244444444443 3344444 5899999999875
No 24
>PF13471 Transglut_core3: Transglutaminase-like superfamily
Probab=28.12 E-value=3.2e+02 Score=22.01 Aligned_cols=72 Identities=15% Similarity=0.180 Sum_probs=45.8
Q ss_pred HHHHHHHHHHhhhhc-chhhHHHHH--HHHHHhcCCcceEeeecCCCCCCCCCCccceEEEEecCCCCCCcceEEEec-c
Q 022485 106 THVLKAMEVFSRLRQ-QKSVFRRQV--MSLLRELGHNAAICKTKWSSSGGLTAGNYEYIDVVQSDSYTSTQNRYFVDL-D 181 (296)
Q Consensus 106 a~v~~a~e~~~~~~~-~~~~~rr~v--~~~Lr~~GydAaiCkS~W~~s~~~paG~heyIdV~~~~~~~~~~~r~IVD~-d 181 (296)
..+..++......-. ...||.+.+ ...|+..|+.+.+|--=-...+ |-.-|-.|.+- ..+|.|. +
T Consensus 39 ~~i~~av~~~~~~~p~~~~CL~~ala~~~~L~~~gi~~~l~iGv~~~~~--~~~aHAWve~~---------g~~v~~~~~ 107 (117)
T PF13471_consen 39 RRIARAVRRASRYLPWRSKCLPRALALQRLLRRRGIPATLVIGVRKDDD--PFAAHAWVECG---------GRVVTGGPE 107 (117)
T ss_pred HHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHhcCCCcEEEEEEeeCCC--CceEEEEEEEC---------CEEEcCCCC
Confidence 445555554433222 568999987 5678999999999964433222 66679998852 3555563 6
Q ss_pred cccceee
Q 022485 182 FAAEFEI 188 (296)
Q Consensus 182 Fr~qFeI 188 (296)
-..+|.+
T Consensus 108 ~~~~f~~ 114 (117)
T PF13471_consen 108 NVRRFTP 114 (117)
T ss_pred CccCeee
Confidence 6666654
No 25
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=28.11 E-value=65 Score=33.57 Aligned_cols=71 Identities=13% Similarity=0.123 Sum_probs=50.4
Q ss_pred HHHHHhcCCcceEeeecCCCCCCCCCCccceEEEEecCCCCCCcceEEEecccccceeeccCChHHHHHHhhCCCceeeC
Q 022485 130 MSLLRELGHNAAICKTKWSSSGGLTAGNYEYIDVVQSDSYTSTQNRYFVDLDFAAEFEIARPTSAYTRLSATLPRVYVGK 209 (296)
Q Consensus 130 ~~~Lr~~GydAaiCkS~W~~s~~~paG~heyIdV~~~~~~~~~~~r~IVD~dFr~qFeIArpT~~Y~~ll~~lP~vFVG~ 209 (296)
+..|.++|||..||.++|.-.|++.++.- +.--++|-.|+-= +..|..+++.++++....
T Consensus 16 a~~La~~g~~vt~~ea~~~~GGk~~s~~~--------------~dg~~~E~glh~f------~~~Y~n~~~ll~~~~~~~ 75 (485)
T COG3349 16 AYELADAGYDVTLYEARDRLGGKVASWRD--------------SDGNHVEHGLHVF------FGCYYNLLTLLKELPIED 75 (485)
T ss_pred HHHHHhCCCceEEEeccCccCceeeeeec--------------CCCCeeeeeeEEe------chhHHHHHHHhhhCCchh
Confidence 57899999999999999988777765432 1122344444332 467999999999998886
Q ss_pred hhhHHHHHHHH
Q 022485 210 GEELKRIVKVT 220 (296)
Q Consensus 210 ~~rL~~iV~~m 220 (296)
..+|+..+.+.
T Consensus 76 ~~~~~~~~~~~ 86 (485)
T COG3349 76 RLQLREHTKTF 86 (485)
T ss_pred eeehHhhhhhh
Confidence 66666666554
No 26
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=27.54 E-value=7.7 Score=38.12 Aligned_cols=95 Identities=19% Similarity=0.342 Sum_probs=55.3
Q ss_pred ChHHHHHHhhCCCceeeChhhHHHHHHH-----HHHHHHHhHHhCCCCCCCCCchhhH------hhhhcCC--CccccCC
Q 022485 192 TSAYTRLSATLPRVYVGKGEELKRIVKV-----TCDAAKKSLKSKDLTLPPWRKNRYM------QNKWFGP--YKRTVNP 258 (296)
Q Consensus 192 T~~Y~~ll~~lP~vFVG~~~rL~~iV~~-----mc~A~k~S~k~~Gm~lPPWRk~~ym------~aKWl~~--~~R~~~~ 258 (296)
.+.|.++|+.||.+-.. .-.|..-|.+ ++.+-++.+++.=+.|-||||-.|- -+-|.|- +.|-.+.
T Consensus 32 ~~~w~~~l~~lp~~~~~-~~~l~~~v~i~~~~~l~~~~~~~l~~~l~~l~PWRKGPf~l~gi~IDtEWrSd~KW~rl~p~ 110 (315)
T PF08003_consen 32 LPRWQEALEQLPDLEPS-SVDLSDSVTIGSASDLSAEQRQQLEQLLKALMPWRKGPFSLFGIHIDTEWRSDWKWDRLLPH 110 (315)
T ss_pred HHHHHHHHHHcCCCCCc-EEecCCcEEeCCCCCCCHHHHHHHHHHHHhhCCcccCCcccCCEeecccccccchHHHHHhh
Confidence 46889999999976432 2233333433 2345566666666778999996664 4778775 4565555
Q ss_pred CCCCCCCCCCCCCCCCCccc---------eeecccCCC
Q 022485 259 IPAGSLSPAVGPSVSNGVKC---------RCIGFDDGV 287 (296)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~c---------r~vgf~~~~ 287 (296)
.+.-.+..-...+.++|.-| +.+|||+-+
T Consensus 111 l~~L~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~ 148 (315)
T PF08003_consen 111 LPDLKGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSP 148 (315)
T ss_pred hCCcCCCEEEEecCCCcHHHHHHhhcCCCEEEEECCCh
Confidence 44333322112333444433 567888743
No 27
>PRK14569 D-alanyl-alanine synthetase A; Provisional
Probab=27.07 E-value=2.9e+02 Score=25.82 Aligned_cols=46 Identities=13% Similarity=0.015 Sum_probs=30.1
Q ss_pred HHHHHHhhCCCceeeChhhHHHHHHHHHHHHHHhHHhCCCCCCCCCc
Q 022485 194 AYTRLSATLPRVYVGKGEELKRIVKVTCDAAKKSLKSKDLTLPPWRK 240 (296)
Q Consensus 194 ~Y~~ll~~lP~vFVG~~~rL~~iV~~mc~A~k~S~k~~Gm~lPPWRk 240 (296)
..+.+|+.+=--|+|..-+--.+- .==..+|+-|++.|.++|||+-
T Consensus 73 ~i~~~le~~gip~~Gs~~~a~~l~-~DK~~~k~~l~~~gIptp~~~~ 118 (296)
T PRK14569 73 RVSALLEMLEIKHTSSSMKSSVIT-MDKMISKEILMHHRMPTPMAKF 118 (296)
T ss_pred HHHHHHHHcCCCeeCCCHHHHHHH-HCHHHHHHHHHHCCCCCCCeEE
Confidence 356777777766888654322211 1113567789999999999964
No 28
>PRK01966 ddl D-alanyl-alanine synthetase A; Reviewed
Probab=26.85 E-value=2.6e+02 Score=26.60 Aligned_cols=47 Identities=19% Similarity=0.195 Sum_probs=32.2
Q ss_pred HHHHHHhhCCCceeeChhhHHHHHHHHHHHHHHhHHhCCCCCCCCCch
Q 022485 194 AYTRLSATLPRVYVGKGEELKRIVKVTCDAAKKSLKSKDLTLPPWRKN 241 (296)
Q Consensus 194 ~Y~~ll~~lP~vFVG~~~rL~~iV~~mc~A~k~S~k~~Gm~lPPWRk~ 241 (296)
..+.+|+.+---|+|....-..+. .==..+|+-|++.|.++|||..-
T Consensus 98 ~iq~lle~~gipy~G~~~~a~~l~-~DK~~~k~~l~~~GIp~p~~~~~ 144 (333)
T PRK01966 98 TIQGLLELLGIPYVGCGVLASALS-MDKILTKRLLAAAGIPVAPYVVL 144 (333)
T ss_pred HHHHHHHHcCCCccCCCHHHHHHH-hCHHHHHHHHHHcCCCCCCEEEE
Confidence 467888888888888763321111 11135788899999999999754
No 29
>PHA01753 Holliday junction resolvase
Probab=25.56 E-value=2.4e+02 Score=24.23 Aligned_cols=50 Identities=12% Similarity=0.313 Sum_probs=37.1
Q ss_pred HHHHHHHHHHhcCCcceEeeecCCCCCCCCCCccceEEEEecCCCCCCcceEEEecccccc
Q 022485 125 FRRQVMSLLRELGHNAAICKTKWSSSGGLTAGNYEYIDVVQSDSYTSTQNRYFVDLDFAAE 185 (296)
Q Consensus 125 ~rr~v~~~Lr~~GydAaiCkS~W~~s~~~paG~heyIdV~~~~~~~~~~~r~IVD~dFr~q 185 (296)
.-+.+++.|++.|| .+....|..+ +.|--||++... .+.-++||+-.|++
T Consensus 10 ~E~~a~~~L~~~G~--~il~rn~~~~-----~~~GEiDIIA~~----~~~lvfVEVKtR~~ 59 (121)
T PHA01753 10 YEYKTLEILESNGF--KALRIPVSGT-----GKQALPDIIATK----NNTIYPIEVKSTSK 59 (121)
T ss_pred HHHHHHHHHHHCCC--EEEEeccccC-----CCCCCccEEEee----CCEEEEEEEEeCCC
Confidence 35678899999999 5667778442 246689999852 35788999998865
No 30
>PHA02119 hypothetical protein
Probab=24.65 E-value=47 Score=26.47 Aligned_cols=32 Identities=25% Similarity=0.404 Sum_probs=22.3
Q ss_pred hHHHHHHHHHHhcCCcceEeeecCCCCCCCCCCccceEEEEe
Q 022485 124 VFRRQVMSLLRELGHNAAICKTKWSSSGGLTAGNYEYIDVVQ 165 (296)
Q Consensus 124 ~~rr~v~~~Lr~~GydAaiCkS~W~~s~~~paG~heyIdV~~ 165 (296)
-.-+-+++.||++||++. |.|-. +-.||.|..
T Consensus 54 i~~~divdylr~lgy~~~-~~s~r---------nes~i~vta 85 (87)
T PHA02119 54 IMPKDIVDYLRSLGYDAK-SDSFR---------NESVITVTA 85 (87)
T ss_pred cccHHHHHHHHHccchhc-ccccc---------CceEEEEec
Confidence 356789999999999964 44322 345777764
No 31
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=23.65 E-value=18 Score=34.78 Aligned_cols=52 Identities=19% Similarity=0.364 Sum_probs=39.9
Q ss_pred hHHHHHHhhCCCceeeChhhHHHHHHH-----HHHHHHHhHHhCCCCCCCCCchhhHh
Q 022485 193 SAYTRLSATLPRVYVGKGEELKRIVKV-----TCDAAKKSLKSKDLTLPPWRKNRYMQ 245 (296)
Q Consensus 193 ~~Y~~ll~~lP~vFVG~~~rL~~iV~~-----mc~A~k~S~k~~Gm~lPPWRk~~ym~ 245 (296)
+.|...|+.||.+-. ..-.|..-|.+ |+.+.++.+......+.|||+-.|-.
T Consensus 40 ~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pwrkg~~~~ 96 (322)
T PRK15068 40 KKWEKALEQLPELTP-DRLDLLDSVTIGSEEPLSEGQRKRIENLLRALMPWRKGPFSL 96 (322)
T ss_pred HHHHHHHHhccCCCc-ceeccCCceEeccCCCCCHHHHHHHHHHHHhhcCcccCCccc
Confidence 679999999997643 32345554544 57888889999999999999998865
No 32
>PRK05586 biotin carboxylase; Validated
Probab=22.98 E-value=1.3e+02 Score=29.83 Aligned_cols=44 Identities=11% Similarity=0.252 Sum_probs=31.0
Q ss_pred HHHHHHhhCCCceeeChhhHHHHHHHHHHHHHHhHHhCCCCCCCC
Q 022485 194 AYTRLSATLPRVYVGKGEELKRIVKVTCDAAKKSLKSKDLTLPPW 238 (296)
Q Consensus 194 ~Y~~ll~~lP~vFVG~~~rL~~iV~~mc~A~k~S~k~~Gm~lPPW 238 (296)
.-..+++.+--.|+|...+.-.+..= =..+|+-|++.|.++|||
T Consensus 90 ~~a~~~~~~gi~~~g~s~~~~~~~~D-K~~~k~~l~~~GIpvp~~ 133 (447)
T PRK05586 90 KFAKMCKECNIVFIGPDSETIELMGN-KSNAREIMIKAGVPVVPG 133 (447)
T ss_pred HHHHHHHHCCCcEECcCHHHHHhhCC-HHHHHHHHHHCCCCCCCC
Confidence 45556777777788877654443321 146788899999999998
No 33
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=22.73 E-value=2.1e+02 Score=32.24 Aligned_cols=106 Identities=11% Similarity=0.061 Sum_probs=57.3
Q ss_pred HHHHHHHhcCCcceEeeecCCCCC-CCCCCccceEEEEecCCCCCCcceEEEecccccceeeccCCh------------H
Q 022485 128 QVMSLLRELGHNAAICKTKWSSSG-GLTAGNYEYIDVVQSDSYTSTQNRYFVDLDFAAEFEIARPTS------------A 194 (296)
Q Consensus 128 ~v~~~Lr~~GydAaiCkS~W~~s~-~~paG~heyIdV~~~~~~~~~~~r~IVD~dFr~qFeIArpT~------------~ 194 (296)
++++.|++.||.+.++.+.-..-. .....++.|+.=. . ...|.++-=+.++...-|+- .
T Consensus 31 q~~kalke~G~~vi~v~~np~~~~~~~~~aD~~y~~p~-~-------~~~v~~ii~~e~~DaIlp~~gg~~~l~la~~l~ 102 (1050)
T TIGR01369 31 QACKALKEEGYRVILVNSNPATIMTDPEMADKVYIEPL-T-------PEAVEKIIEKERPDAILPTFGGQTALNLAVELE 102 (1050)
T ss_pred HHHHHHHHcCCEEEEEecchhhccCChhcCCEEEECCC-C-------HHHHHHHHHHhCCCEEEECCCChhHHHHHhhHH
Confidence 678999999999999987754311 1111234444210 0 11111111111222111221 2
Q ss_pred HHHHHhhCCCceeeChhhHHHHHHHHHHHHHHhHHhCCCCCCCCCchh
Q 022485 195 YTRLSATLPRVYVGKGEELKRIVKVTCDAAKKSLKSKDLTLPPWRKNR 242 (296)
Q Consensus 195 Y~~ll~~lP~vFVG~~~rL~~iV~~mc~A~k~S~k~~Gm~lPPWRk~~ 242 (296)
.+.+|+.+-..++|+..+.-++.+= =..+|+-|++.|+++|||+.-.
T Consensus 103 ~~~~le~~Gv~~~G~~~~ai~~~~D-K~~~k~~l~~~Gipvp~~~~v~ 149 (1050)
T TIGR01369 103 ESGVLEKYGVEVLGTPVEAIKKAED-RELFREAMKEIGEPVPESEIAH 149 (1050)
T ss_pred HHhHHHHCCCEEECCCHHHHHHhCC-HHHHHHHHHHCCCCCCCeeecC
Confidence 3446777666677876544333211 1246888999999999998754
No 34
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=22.14 E-value=2.8e+02 Score=25.46 Aligned_cols=47 Identities=21% Similarity=0.236 Sum_probs=30.8
Q ss_pred HHHHHhhCCCceeeChhhHHHHHHHHHHHHHHhHHhCCCCCCCCCchh
Q 022485 195 YTRLSATLPRVYVGKGEELKRIVKVTCDAAKKSLKSKDLTLPPWRKNR 242 (296)
Q Consensus 195 Y~~ll~~lP~vFVG~~~rL~~iV~~mc~A~k~S~k~~Gm~lPPWRk~~ 242 (296)
+..+++.+---|+|+......+.. ==..+++-|++.|.+.|||....
T Consensus 74 ~~~~le~~gi~~~g~~~~~~~~~~-dK~~~k~~l~~~gIp~p~~~~~~ 120 (304)
T PRK01372 74 IQGLLELLGIPYTGSGVLASALAM-DKLRTKLVWQAAGLPTPPWIVLT 120 (304)
T ss_pred HHHHHHHcCCCccCCCHHHHHHHh-CHHHHHHHHHHCCCCCCCEEEEe
Confidence 456778777777888533222211 01256777999999999998543
No 35
>PRK12413 phosphomethylpyrimidine kinase; Provisional
Probab=22.08 E-value=1.7e+02 Score=26.26 Aligned_cols=46 Identities=11% Similarity=-0.043 Sum_probs=30.8
Q ss_pred cceEEEecccccceeeccCChHHHHHH-hhCC--CceeeChhhHHHHHH
Q 022485 173 QNRYFVDLDFAAEFEIARPTSAYTRLS-ATLP--RVYVGKGEELKRIVK 218 (296)
Q Consensus 173 ~~r~IVD~dFr~qFeIArpT~~Y~~ll-~~lP--~vFVG~~~rL~~iV~ 218 (296)
+.++|+||.++...--.-..+.+...+ +.+| .++..+.+++..+..
T Consensus 97 ~~~vv~DPv~~~~~~~~~~~~~~~~~l~~ll~~~dli~pN~~E~~~L~g 145 (253)
T PRK12413 97 GIPVVLDPVLVCKETHDVEVSELRQELIQFFPYVTVITPNLVEAELLSG 145 (253)
T ss_pred CCCEEEcCceecCCCCccccHHHHHHHHHHhccCcEECCCHHHHHHHhC
Confidence 568999999997653111123444444 4578 688888888888765
No 36
>PRK11613 folP dihydropteroate synthase; Provisional
Probab=21.79 E-value=2.7e+02 Score=26.88 Aligned_cols=70 Identities=19% Similarity=0.275 Sum_probs=36.2
Q ss_pred CCcceEeeecCCCCCCCCCCccceEEEEec------------CCCCCCcceEEEecccccceeeccCChHHHHHHhhC--
Q 022485 137 GHNAAICKTKWSSSGGLTAGNYEYIDVVQS------------DSYTSTQNRYFVDLDFAAEFEIARPTSAYTRLSATL-- 202 (296)
Q Consensus 137 GydAaiCkS~W~~s~~~paG~heyIdV~~~------------~~~~~~~~r~IVD~dFr~qFeIArpT~~Y~~ll~~l-- 202 (296)
.|++.+|--...+.+.-....+.|-||+.. ...+-..+++|+||.| -| +.-....-++|+.|
T Consensus 131 ~~~~~vVlmh~~g~p~~~~~~~~y~dv~~~v~~~l~~~i~~a~~~GI~~~~IilDPGi--GF--~k~~~~n~~ll~~l~~ 206 (282)
T PRK11613 131 ETGLPVCLMHMQGNPKTMQEAPKYDDVFAEVNRYFIEQIARCEAAGIAKEKLLLDPGF--GF--GKNLSHNYQLLARLAE 206 (282)
T ss_pred HcCCCEEEEcCCCCCCccccCCCcccHHHHHHHHHHHHHHHHHHcCCChhhEEEeCCC--Cc--CCCHHHHHHHHHHHHH
Confidence 466666665554333222234556665432 0112234699999976 24 44444444455443
Q ss_pred ----C-CceeeCh
Q 022485 203 ----P-RVYVGKG 210 (296)
Q Consensus 203 ----P-~vFVG~~ 210 (296)
- +++||.+
T Consensus 207 l~~lg~Pilvg~S 219 (282)
T PRK11613 207 FHHFNLPLLVGMS 219 (282)
T ss_pred HHhCCCCEEEEec
Confidence 2 5677744
No 37
>PF10759 DUF2587: Protein of unknown function (DUF2587); InterPro: IPR019695 This entry represents proteins found Actinobacteria sp. The function is not known.
Probab=21.75 E-value=48 Score=29.83 Aligned_cols=14 Identities=29% Similarity=0.501 Sum_probs=12.5
Q ss_pred CCcccHHhhhhhhc
Q 022485 11 TDPLNEKVKAQLIG 24 (296)
Q Consensus 11 t~~~d~~araRL~g 24 (296)
.+|||+++|.||..
T Consensus 48 aApLDeAsR~RL~e 61 (169)
T PF10759_consen 48 AAPLDEASRNRLRE 61 (169)
T ss_pred cCcCCHHHHHHHHH
Confidence 58999999999994
No 38
>COG5005 Mu-like prophage protein gpG [General function prediction only]
Probab=20.22 E-value=1e+02 Score=27.12 Aligned_cols=61 Identities=20% Similarity=0.333 Sum_probs=48.1
Q ss_pred ChHHHHHHhhCCCceeeChhhHHHHHHHHHHHHHHhHHhCCCCCCCCCchhh-HhhhhcCCCcc
Q 022485 192 TSAYTRLSATLPRVYVGKGEELKRIVKVTCDAAKKSLKSKDLTLPPWRKNRY-MQNKWFGPYKR 254 (296)
Q Consensus 192 T~~Y~~ll~~lP~vFVG~~~rL~~iV~~mc~A~k~S~k~~Gm~lPPWRk~~y-m~aKWl~~~~R 254 (296)
|..-++-|.+|-.+.=|+.+=.+++-.+|-.|++..|..-|-| -|++.+| +.-|=|.-..|
T Consensus 9 ~~~i~~~~~~laq~~~~rk~Lmr~vA~~m~sav~~nF~~~grP--~w~~~Ky~r~Gk~L~~~Gr 70 (140)
T COG5005 9 TSTIQQKLEALAQVTDGRKDLMRSVAGTMRSAVEKNFELEGRP--KWKKRKYGRTGKILQDSGR 70 (140)
T ss_pred HHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCCc--chhhcccCCCCCceeecch
Confidence 3444555666667777888889999999999999999999875 9999999 77777765555
No 39
>PRK14571 D-alanyl-alanine synthetase A; Provisional
Probab=20.07 E-value=1.8e+02 Score=27.05 Aligned_cols=92 Identities=16% Similarity=0.148 Sum_probs=48.8
Q ss_pred HHHHHHHHHhcCCcceEeeecCCCCCCCCC-CccceEEEEecCCCCCCcceEEEecccccceeeccCChHHHHHHhhCCC
Q 022485 126 RRQVMSLLRELGHNAAICKTKWSSSGGLTA-GNYEYIDVVQSDSYTSTQNRYFVDLDFAAEFEIARPTSAYTRLSATLPR 204 (296)
Q Consensus 126 rr~v~~~Lr~~GydAaiCkS~W~~s~~~pa-G~heyIdV~~~~~~~~~~~r~IVD~dFr~qFeIArpT~~Y~~ll~~lP~ 204 (296)
-+.+.+.|++.||++.+.-...+-...+.. .+ +|+++....+..++ ...-+.+|+.+--
T Consensus 21 ~~~i~~al~~~g~~~~~i~~~~~~~~~~~~~~~---~D~v~~~~~g~~ge-----------------~~~~~~~le~~gi 80 (299)
T PRK14571 21 GERVKKALEKLGYEVTVFDVDEDFLKKVDQLKS---FDVVFNVLHGTFGE-----------------DGTLQAILDFLGI 80 (299)
T ss_pred HHHHHHHHHHcCCeEEEEccCchHHHHhhhccC---CCEEEEeCCCCCCC-----------------ccHHHHHHHHcCC
Confidence 357888999999998777544221111111 11 23333210010111 1234667888888
Q ss_pred ceeeChhhHHHHH--HHHHHHHHHhHHhCCCCCCCCCch
Q 022485 205 VYVGKGEELKRIV--KVTCDAAKKSLKSKDLTLPPWRKN 241 (296)
Q Consensus 205 vFVG~~~rL~~iV--~~mc~A~k~S~k~~Gm~lPPWRk~ 241 (296)
.|+|+...-..+. +. .+|+-|+ .|.++|+|...
T Consensus 81 p~~G~~~~a~~i~~DK~---~~k~~l~-~~ip~p~~~~~ 115 (299)
T PRK14571 81 RYTGSDAFSSMICFDKL---LTYRFLK-GTVEIPDFVEI 115 (299)
T ss_pred CccCCCHHHHHHHcCHH---HHHHHHh-cCCCCCCEEEE
Confidence 8999754432221 22 2344455 58999999764
Done!