BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022487
(296 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6AZT6|DEPD7_XENLA DEP domain-containing protein 7 OS=Xenopus laevis GN=depdc7 PE=2
SV=1
Length = 522
Score = 40.0 bits (92), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 62/134 (46%), Gaps = 13/134 (9%)
Query: 3 GLIKFLVSCRKLIVITIMRICMQLFKSPI-SHFVMFSYFPFMQVMDKSNFKITTDEEIDV 61
G+ + LV+ + + ++C++L SP F YF D S F++ +EE D
Sbjct: 330 GIAELLVNGKTEPALEATQLCLKLLDSPSREEFRRLLYF-MALAADPSEFRL--NEETDN 386
Query: 62 ALSGQYLLHLPITVNES--KLDKKLLKRYFEEHHHD--HLPD-----FADKYVIFRRGIG 112
++ + + I N+S K LL + +HH D +P +DK V ++G
Sbjct: 387 RMTVKRMFCRAIVNNKSLSKGKCDLLVLFILDHHKDVFKIPGSLHKMVSDKLVAIQQGTD 446
Query: 113 VDQTTDYFFMEKVD 126
D+ T Y F ++VD
Sbjct: 447 PDRDTGYTFCQRVD 460
>sp|Q0VGW0|DEPD7_XENTR DEP domain-containing protein 7 OS=Xenopus tropicalis GN=depdc7
PE=2 SV=2
Length = 520
Score = 39.7 bits (91), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 61/134 (45%), Gaps = 13/134 (9%)
Query: 3 GLIKFLVSCRKLIVITIMRICMQLFKSPI-SHFVMFSYFPFMQVMDKSNFKITTDEEIDV 61
G+ + LV+ + + ++C++L SP F YF D S F++ EE D
Sbjct: 328 GIAELLVNGKNEPALEATQLCLKLLDSPSREEFRRLLYF-MALAADPSEFRL--HEETDN 384
Query: 62 ALSGQYLLHLPITVNE--SKLDKKLLKRYFEEHHHD--HLPD-----FADKYVIFRRGIG 112
++ + + + N+ SK LL + +HH D +P +DK V ++G
Sbjct: 385 RMTVKRMFSRAVVCNKNLSKGKCDLLVLFILDHHKDVFKIPGSLHKMVSDKLVAIQQGSD 444
Query: 113 VDQTTDYFFMEKVD 126
D+ T Y F ++VD
Sbjct: 445 PDRDTGYTFCQRVD 458
>sp|E4ZVX1|VPS10_LEPMJ Vacuolar protein sorting/targeting protein 10 OS=Leptosphaeria
maculans (strain JN3 / isolate v23.1.3 / race
Av1-4-5-6-7-8) GN=VPS10 PE=3 SV=2
Length = 1477
Score = 32.3 bits (72), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 29/61 (47%)
Query: 217 AERGVYLKHFRNIPMADMEIVLPEKKNPGLTPLDWVKFLVSAVVGLVAVITSAQLHEIDL 276
A G+ +RN I L E + WVK+ V+AV GLVAV+T+ L L
Sbjct: 1369 AAGGIGYYVWRNWDGKFGRIRLGENGGSFDSDAAWVKWPVAAVSGLVAVVTAIPLVMGSL 1428
Query: 277 W 277
W
Sbjct: 1429 W 1429
>sp|Q9U2G0|U520_CAEEL Putative U5 small nuclear ribonucleoprotein 200 kDa helicase
OS=Caenorhabditis elegans GN=Y46G5A.4 PE=3 SV=1
Length = 2145
Score = 32.0 bits (71), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 36/85 (42%), Gaps = 1/85 (1%)
Query: 202 DRIIVLYRQASTKSKAERGVYLKHFRNIPMADMEIVLPEKKNPGLTPLDWVKFLVSAVVG 261
+ +IV S K+ L+HF N P A + P + DW + L A+
Sbjct: 1338 ENVIVCAPNGSGKTAIAELAVLRHFENTPEAKAVYITPMEDMATKVYADWKRRLEPAIGH 1397
Query: 262 LVAVITSAQLHEIDLWV-GMAILST 285
+ ++T Q ++ L G I+ST
Sbjct: 1398 TIVLLTGEQTMDLKLAQRGQLIIST 1422
>sp|P36148|GPT2_YEAST Glycerol-3-phosphate O-acyltransferase 2 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=GPT2 PE=1
SV=1
Length = 743
Score = 32.0 bits (71), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 5/55 (9%)
Query: 221 VYLKHFRNIPMADMEIVLPEKKNPGLTPLDWVK-FLVSAVVGLVAVITSAQLHEI 274
+Y +N P EI+ KNP TP+++ K F +++GL +++AQ+ EI
Sbjct: 151 IYAPDLKNHP----EIIKGRSKNPQTTPVNFTKRFSAKSLLGLPDYLSNAQIKEI 201
>sp|A1CSR1|MRH4_ASPCL ATP-dependent RNA helicase mrh4, mitochondrial OS=Aspergillus
clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC
3887 / NRRL 1) GN=mrh4 PE=3 SV=2
Length = 632
Score = 32.0 bits (71), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 32/69 (46%)
Query: 28 KSPISHFVMFSYFPFMQVMDKSNFKITTDEEIDVALSGQYLLHLPITVNESKLDKKLLKR 87
K+ I+ F FP + V+ S ++V + L +P + ESK DKK +K
Sbjct: 134 KAKIADITSFDQFPLLPVVRNSIVSQALPGLMEVTPTPIQRLAIPKLLEESKPDKKPVKT 193
Query: 88 YFEEHHHDH 96
+E H+D
Sbjct: 194 DDDEPHYDQ 202
>sp|B0K9L4|MIAB_THEP3 (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
OS=Thermoanaerobacter pseudethanolicus (strain ATCC
33223 / 39E) GN=miaB PE=3 SV=1
Length = 471
Score = 31.6 bits (70), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 35/67 (52%), Gaps = 10/67 (14%)
Query: 69 LHLPITVNESKLDKKLLKRYFEEHH-------HDHLPDFADKYVIFRRGIGVDQTTDYFF 121
LHLP+ +K+ KK+ ++Y +EH+ ++PD A I +G T+ F
Sbjct: 289 LHLPVQAGSNKILKKMNRKYTKEHYLEIIDKVRSNIPDIAITTDII---VGFPGETEEDF 345
Query: 122 MEKVDML 128
+E +D++
Sbjct: 346 LETLDLV 352
>sp|B0K1A1|MIAB_THEPX (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
OS=Thermoanaerobacter sp. (strain X514) GN=miaB PE=3
SV=1
Length = 471
Score = 31.6 bits (70), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 35/67 (52%), Gaps = 10/67 (14%)
Query: 69 LHLPITVNESKLDKKLLKRYFEEHH-------HDHLPDFADKYVIFRRGIGVDQTTDYFF 121
LHLP+ +K+ KK+ ++Y +EH+ ++PD A I +G T+ F
Sbjct: 289 LHLPVQAGSNKILKKMNRKYTKEHYLEIIDKVRSNIPDIAITTDII---VGFPGETEEDF 345
Query: 122 MEKVDML 128
+E +D++
Sbjct: 346 LETLDLV 352
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.326 0.140 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 107,771,347
Number of Sequences: 539616
Number of extensions: 4458454
Number of successful extensions: 15332
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 15327
Number of HSP's gapped (non-prelim): 20
length of query: 296
length of database: 191,569,459
effective HSP length: 117
effective length of query: 179
effective length of database: 128,434,387
effective search space: 22989755273
effective search space used: 22989755273
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 61 (28.1 bits)