Query 022487
Match_columns 296
No_of_seqs 86 out of 88
Neff 4.3
Searched_HMMs 46136
Date Fri Mar 29 03:54:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022487.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022487hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF12576 DUF3754: Protein of u 99.9 6.3E-28 1.4E-32 205.6 8.4 95 201-296 1-115 (141)
2 PHA01814 hypothetical protein 65.1 1.7 3.6E-05 37.2 -0.6 45 61-112 54-98 (137)
3 PF04369 Lactococcin: Lactococ 60.2 6 0.00013 30.2 1.7 25 48-72 4-28 (60)
4 PF13965 SID-1_RNA_chan: dsRNA 34.0 59 0.0013 34.3 4.6 54 241-295 363-418 (570)
5 PF03818 MadM: Malonate/sodium 33.0 84 0.0018 24.1 4.1 39 257-295 17-60 (60)
6 PF14015 DUF4231: Protein of u 32.9 79 0.0017 25.0 4.3 14 276-289 51-64 (112)
7 PF13572 DUF4134: Domain of un 30.3 1.1E+02 0.0024 25.3 4.7 48 248-295 39-98 (98)
8 PF10785 NADH-u_ox-rdase: NADH 29.8 1.7E+02 0.0036 23.4 5.6 47 245-291 19-72 (86)
9 PF08766 DEK_C: DEK C terminal 27.9 55 0.0012 23.5 2.3 32 41-74 8-39 (54)
10 COG1291 MotA Flagellar motor c 27.8 81 0.0017 30.5 4.1 37 255-291 159-200 (266)
11 PLN02975 complex I subunit 26.3 1.6E+02 0.0036 24.4 5.1 47 245-291 25-73 (97)
12 PF07308 DUF1456: Protein of u 21.6 78 0.0017 24.3 2.2 51 41-110 18-68 (68)
13 PF14074 DUF4257: Protein of u 21.1 1.3E+02 0.0029 24.3 3.5 15 281-295 66-80 (82)
No 1
>PF12576 DUF3754: Protein of unknown function (DUF3754); InterPro: IPR022227 This domain family is found in bacteria, archaea and eukaryotes, and is typically between 135 and 166 amino acids in length. There is a single completely conserved residue P that may be functionally important.
Probab=99.95 E-value=6.3e-28 Score=205.65 Aligned_cols=95 Identities=41% Similarity=0.677 Sum_probs=85.5
Q ss_pred ccEEEEEEEeccccc--------c------CCCCeEEEeeCCCCcCCccccccCCCCCCCCchhhHHHHHHHHHHHHHHH
Q 022487 201 FDRIIVLYRQASTKS--------K------AERGVYLKHFRNIPMADMEIVLPEKKNPGLTPLDWVKFLVSAVVGLVAVI 266 (296)
Q Consensus 201 F~rvVVlYR~~~~k~--------~------~~~~I~iK~FknIPmADlE~VfPeKK~p~lr~~D~vk~~vsaVvglva~~ 266 (296)
||||||+||+++++. + .+++||||+||||||||||+|||||| |+|||+||+++++++++|+++++
T Consensus 1 f~~vvllyr~~~~~~~~~~~~~~~~~~~~~~~~~i~lK~FkdIP~aDLE~llP~~k-v~~~~~D~~~l~~~~vvg~v~~~ 79 (141)
T PF12576_consen 1 FEEVVLLYRFKDSRKFKAKKESIQEAPKKFKPGPIYLKSFKDIPMADLEMLLPEKK-VRMRPFDRVKLGVSAVVGGVAVF 79 (141)
T ss_pred CcEEEEEEEecccccchhhhhhhhhccccCCCCCeEEEEeCCCCccchhHhCCCCc-CCcCHHHHHHHHHHHHHHHHHHH
Confidence 899999999988744 1 36999999999999999999999997 89999999999999999999999
Q ss_pred Hhhcccch----h--HHHHHHHHHHHHhhheeeecC
Q 022487 267 TSAQLHEI----D--LWVGMAILSTVIGYCAKTYFT 296 (296)
Q Consensus 267 ~sl~~~k~----d--~~v~~aiLs~~~gy~~k~Y~t 296 (296)
+++..+.. + +++.++++++++|||+|+|++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~r~~~~ 115 (141)
T PF12576_consen 80 VKLVGMSLLLLSDIFLILILSLLSALGGYAFRQYTG 115 (141)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99765552 2 788999999999999999974
No 2
>PHA01814 hypothetical protein
Probab=65.09 E-value=1.7 Score=37.18 Aligned_cols=45 Identities=27% Similarity=0.396 Sum_probs=38.9
Q ss_pred HHhcCcceeeeccccCcchhhHHHHHHHhhhccCCCCCCCCCeEEEEecccc
Q 022487 61 VALSGQYLLHLPITVNESKLDKKLLKRYFEEHHHDHLPDFADKYVIFRRGIG 112 (296)
Q Consensus 61 ~Al~~~YLl~Lpi~VD~~klD~~ll~~f~~~~p~~~lp~f~d~~lIFrRG~g 112 (296)
.-.++.-||+|.|+||-+|.==..|+-|+.+|-++ .-+||+||+-
T Consensus 54 d~~~e~dlftldididikkhvfn~l~~yy~~~~~~-------~~iiykk~v~ 98 (137)
T PHA01814 54 DTKNENDLFTLDIDIDIKKHVFNCLKVYYIEHTED-------INIIYKKGVY 98 (137)
T ss_pred ccccccceEEEEeeeehhhheeeeEEEeeeccccc-------ceeeeecceE
Confidence 45678899999999999998877888999998876 7899999984
No 3
>PF04369 Lactococcin: Lactococcin-like family; InterPro: IPR007464 Bacteriocins are produced by bacteria to inhibit the growth of similar or closely related bacterial strains. The class II bacteriocins are small heat-stable proteins for which disulphide bonds are the only modification to the peptide. Lactococcin A and B are class-IId bacteriocins (one-peptide non-pediocin-like bacteriocin) [, ].; GO: 0042742 defense response to bacterium, 0005576 extracellular region
Probab=60.24 E-value=6 Score=30.24 Aligned_cols=25 Identities=28% Similarity=0.337 Sum_probs=19.2
Q ss_pred hCCCcccCHHHHHHHhcCcceeeec
Q 022487 48 KSNFKITTDEEIDVALSGQYLLHLP 72 (296)
Q Consensus 48 kANF~~LS~~el~~Al~~~YLl~Lp 72 (296)
+-||+.+|+|||+.+-.+.+-+.+.
T Consensus 4 ~~nf~~~sdeeL~~i~GG~l~~iqs 28 (60)
T PF04369_consen 4 QLNFNILSDEELSKINGGGLPYIQS 28 (60)
T ss_pred cccceecCHHHHhhccCCcceeeee
Confidence 3499999999999987775555444
No 4
>PF13965 SID-1_RNA_chan: dsRNA-gated channel SID-1
Probab=33.95 E-value=59 Score=34.35 Aligned_cols=54 Identities=20% Similarity=0.405 Sum_probs=40.6
Q ss_pred CCCCCCCchhhHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHH--HHhhheeeec
Q 022487 241 KKNPGLTPLDWVKFLVSAVVGLVAVITSAQLHEIDLWVGMAILST--VIGYCAKTYF 295 (296)
Q Consensus 241 KK~p~lr~~D~vk~~vsaVvglva~~~sl~~~k~d~~v~~aiLs~--~~gy~~k~Y~ 295 (296)
|..|..++..+..+++.|++.+.++++.+.... =+|++++++.. .+..|.|.|+
T Consensus 363 ~RH~di~a~a~~~f~~~av~i~~~~~gv~~~~~-~f~iiF~ii~i~~~~~ls~q~Yy 418 (570)
T PF13965_consen 363 KRHPDINASAYAAFAVFAVVIFLGLIGVLEKSS-IFWIIFSIIHILSCFFLSLQIYY 418 (570)
T ss_pred hhCCCCchhHHHHHHHHHHHHHHHhhhheeccc-eehhHHHHHHHHHHHHHHhhhee
Confidence 345777888999999999999998888876555 47777776643 4466778886
No 5
>PF03818 MadM: Malonate/sodium symporter MadM subunit; InterPro: IPR018402 The MSS family includes the monobasic malonate:Na+ symporter of Malonomonas rubra. It consists of two integral membrane proteins, MadL and MadM.The transporter is believed to catalyze the electroneutral reversible uptake of H+-malonate with one Na+, and both subunits have been shown to be essential for activity.
Probab=32.98 E-value=84 Score=24.12 Aligned_cols=39 Identities=23% Similarity=0.252 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHh-----hcccchhHHHHHHHHHHHHhhheeeec
Q 022487 257 SAVVGLVAVITS-----AQLHEIDLWVGMAILSTVIGYCAKTYF 295 (296)
Q Consensus 257 saVvglva~~~s-----l~~~k~d~~v~~aiLs~~~gy~~k~Y~ 295 (296)
-|++|++..++. +-.+|..--.+..+++.+.+|.+-+|+
T Consensus 17 Fa~vG~~m~~S~~lS~~LT~GrihGSAIAI~lGLvLAy~GG~~T 60 (60)
T PF03818_consen 17 FAVVGIIMWVSYWLSKKLTRGRIHGSAIAIVLGLVLAYIGGVYT 60 (60)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHccccC
Confidence 356676666654 446777777899999999999987664
No 6
>PF14015 DUF4231: Protein of unknown function (DUF4231)
Probab=32.91 E-value=79 Score=24.97 Aligned_cols=14 Identities=36% Similarity=0.294 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHhh
Q 022487 276 LWVGMAILSTVIGY 289 (296)
Q Consensus 276 ~~v~~aiLs~~~gy 289 (296)
...+.++++++++-
T Consensus 51 ~~~~~~~l~~~~~~ 64 (112)
T PF14015_consen 51 LKLVAAILSALAAI 64 (112)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444455554443
No 7
>PF13572 DUF4134: Domain of unknown function (DUF4134)
Probab=30.29 E-value=1.1e+02 Score=25.27 Aligned_cols=48 Identities=25% Similarity=0.387 Sum_probs=28.3
Q ss_pred chhhHHHHHHHHHHHHHHHHhh------cccchhH------HHHHHHHHHHHhhheeeec
Q 022487 248 PLDWVKFLVSAVVGLVAVITSA------QLHEIDL------WVGMAILSTVIGYCAKTYF 295 (296)
Q Consensus 248 ~~D~vk~~vsaVvglva~~~sl------~~~k~d~------~v~~aiLs~~~gy~~k~Y~ 295 (296)
-.|-+.-++=+|+|++++++++ ++++.|+ |+...+.-.+++++.+.+|
T Consensus 39 y~~~~~~l~yaI~aVvglIGai~VY~k~~~Gd~dv~k~i~~w~GaciFli~~a~~l~afF 98 (98)
T PF13572_consen 39 YFDPVTKLMYAIGAVVGLIGAIRVYIKWNNGDQDVKKSIMSWFGACIFLIVAATVLPAFF 98 (98)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 4566666667777777777775 3666665 4444444445555555443
No 8
>PF10785 NADH-u_ox-rdase: NADH-ubiquinone oxidoreductase complex I, 21 kDa subunit; InterPro: IPR019721 This domain is found in the N-terminal region of NADH-ubiquinone oxidoreductase 21kDa subunits from plants and fungi [].
Probab=29.77 E-value=1.7e+02 Score=23.40 Aligned_cols=47 Identities=6% Similarity=-0.067 Sum_probs=29.3
Q ss_pred CCCchhhHHHHHHHHHHHHHHHHh--hc---cc--chhHHHHHHHHHHHHhhhe
Q 022487 245 GLTPLDWVKFLVSAVVGLVAVITS--AQ---LH--EIDLWVGMAILSTVIGYCA 291 (296)
Q Consensus 245 ~lr~~D~vk~~vsaVvglva~~~s--l~---~~--k~d~~v~~aiLs~~~gy~~ 291 (296)
.+|+.|+......+.++..++... .. .. +.-.-.+.++++..+|++.
T Consensus 19 ~~R~sDy~~~a~~ta~~p~~~~~~~~~~~~~~~~~~~~~~~~a~~ig~~gGfl~ 72 (86)
T PF10785_consen 19 YFRPSDYAIWAGATAASPPLGYYMERSAPSRVGRGGGPAMRLAGAIGFFGGFLL 72 (86)
T ss_pred hCCHHHHHHHHHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHH
Confidence 469999999988888775554432 21 11 0224446677777777653
No 9
>PF08766 DEK_C: DEK C terminal domain; InterPro: IPR014876 DEK is a chromatin associated protein that is linked with cancers and autoimmune disease. This domain is found at the C-terminal of DEK and is of clinical importance since it can reverse the characteristic abnormal DNA-mutagen sensitivity in fibroblasts from ataxia-telangiectasia (A-T) patients []. The structure of this domain shows it to be homologous to the E2F/DP transcription factor family []. This domain is also found in chitin synthase proteins like Q8TF96 from SWISSPROT, and in protein phosphatases such as Q6NN85 from SWISSPROT. ; PDB: 1Q1V_A.
Probab=27.88 E-value=55 Score=23.50 Aligned_cols=32 Identities=6% Similarity=0.354 Sum_probs=22.3
Q ss_pred hHHHHHhhCCCcccCHHHHHHHhcCcceeeeccc
Q 022487 41 PFMQVMDKSNFKITTDEEIDVALSGQYLLHLPIT 74 (296)
Q Consensus 41 ~l~qlmekANF~~LS~~el~~Al~~~YLl~Lpi~ 74 (296)
.+..+|..+++..+|.+++-.++.+.| +.++.
T Consensus 8 ~i~~iL~~~dl~~vT~k~vr~~Le~~~--~~dL~ 39 (54)
T PF08766_consen 8 AIREILREADLDTVTKKQVREQLEERF--GVDLS 39 (54)
T ss_dssp HHHHHHTTS-GGG--HHHHHHHHHHH---SS--S
T ss_pred HHHHHHHhCCHhHhhHHHHHHHHHHHH--CCCcH
Confidence 467899999999999999999999988 44444
No 10
>COG1291 MotA Flagellar motor component [Cell motility and secretion]
Probab=27.84 E-value=81 Score=30.50 Aligned_cols=37 Identities=16% Similarity=0.205 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHhhcccch-----hHHHHHHHHHHHHhhhe
Q 022487 255 LVSAVVGLVAVITSAQLHEI-----DLWVGMAILSTVIGYCA 291 (296)
Q Consensus 255 ~vsaVvglva~~~sl~~~k~-----d~~v~~aiLs~~~gy~~ 291 (296)
.++||+|++..++++..|.. -.-.+.+.+|++.+|+.
T Consensus 159 ivgaV~GlI~~l~~l~~p~~LG~~iA~Alv~T~~Gi~~ay~~ 200 (266)
T COG1291 159 IVGAVMGLIHALGNLDDPAELGALIAAALVGTLYGIFLAYGL 200 (266)
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47899999999999875332 12236677888888874
No 11
>PLN02975 complex I subunit
Probab=26.28 E-value=1.6e+02 Score=24.43 Aligned_cols=47 Identities=15% Similarity=0.153 Sum_probs=27.5
Q ss_pred CCCchhhHHHHHHHHHHHHHHHHhhcc-cch-hHHHHHHHHHHHHhhhe
Q 022487 245 GLTPLDWVKFLVSAVVGLVAVITSAQL-HEI-DLWVGMAILSTVIGYCA 291 (296)
Q Consensus 245 ~lr~~D~vk~~vsaVvglva~~~sl~~-~k~-d~~v~~aiLs~~~gy~~ 291 (296)
.+|+.|+++....+.+|..+.+-+-.. +.. ---.+.++++.++|.++
T Consensus 25 yfr~sDY~~~a~~ta~s~~~~~~~~~~~~~~~~~mr~ag~iG~~gGf~~ 73 (97)
T PLN02975 25 NFSALDYLRFATITGVSVTVGYLSGIKPGIRGPSMVTGGLIGLMGGFMY 73 (97)
T ss_pred hCCHHHHHHHHHHHHHHHHHHHHHccCccccchHHHHHHHHHHhhhHHh
Confidence 469999999998887776655443211 110 11134555666666653
No 12
>PF07308 DUF1456: Protein of unknown function (DUF1456); InterPro: IPR009921 This domain occurs in several hypothetical bacterial proteins of around 150 residues in length. The function of this domain is unknown.
Probab=21.61 E-value=78 Score=24.35 Aligned_cols=51 Identities=16% Similarity=0.382 Sum_probs=35.1
Q ss_pred hHHHHHhhCCCcccCHHHHHHHhcCcceeeeccccCcchhhHHHHHHHhhhccCCCCCCCCCeEEEEecc
Q 022487 41 PFMQVMDKSNFKITTDEEIDVALSGQYLLHLPITVNESKLDKKLLKRYFEEHHHDHLPDFADKYVIFRRG 110 (296)
Q Consensus 41 ~l~qlmekANF~~LS~~el~~Al~~~YLl~Lpi~VD~~klD~~ll~~f~~~~p~~~lp~f~d~~lIFrRG 110 (296)
++..+++.++|+ +|.+|+..=+.. |-+-+....+++.|..|... .++++||
T Consensus 18 ~m~~if~l~~~~-vs~~el~a~lrk------e~~~~y~~c~D~~L~~FL~G------------Li~~~RG 68 (68)
T PF07308_consen 18 DMIEIFALAGFE-VSKAELSAWLRK------EDEKGYKECSDQLLRNFLNG------------LIIHKRG 68 (68)
T ss_pred HHHHHHHHcCCc-cCHHHHHHHHCC------CCCccccccChHHHHHHHHH------------HHHHhcC
Confidence 566777888864 677777654443 33446677778888888776 7777777
No 13
>PF14074 DUF4257: Protein of unknown function (DUF4257)
Probab=21.09 E-value=1.3e+02 Score=24.31 Aligned_cols=15 Identities=13% Similarity=0.350 Sum_probs=10.7
Q ss_pred HHHHHHHhhheeeec
Q 022487 281 AILSTVIGYCAKTYF 295 (296)
Q Consensus 281 aiLs~~~gy~~k~Y~ 295 (296)
..+|.++||.+..|.
T Consensus 66 v~vSilaG~gGe~~L 80 (82)
T PF14074_consen 66 VKVSILAGIGGEAFL 80 (82)
T ss_pred hhhhhhhhcCceeEE
Confidence 456777888777764
Done!