Query 022487
Match_columns 296
No_of_seqs 86 out of 88
Neff 4.3
Searched_HMMs 29240
Date Mon Mar 25 06:16:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022487.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022487hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1j23_A HEF nuclease, ATP-depen 20.2 44 0.0015 27.4 1.9 40 171-211 43-85 (143)
2 1vry_A Glycine receptor alpha- 17.9 1.9E+02 0.0066 21.7 4.9 32 250-281 3-42 (76)
3 3udc_A Small-conductance mecha 17.4 1.5E+02 0.0052 26.4 4.9 35 259-293 78-112 (285)
4 2vv5_A MSCS, small-conductance 16.0 1.5E+02 0.0051 26.5 4.6 44 250-293 70-113 (286)
5 2ko6_A Uncharacterized protein 14.8 17 0.00058 28.5 -1.8 26 83-108 11-53 (89)
6 1u5t_B Defective in vacuolar p 11.3 3.8E+02 0.013 22.5 5.5 55 18-72 19-78 (169)
7 2ccq_A P97, peptide N-glycanas 11.0 1.6E+02 0.0055 22.8 2.8 55 16-81 25-89 (99)
8 2ld7_A Histone deacetylase com 11.0 97 0.0033 24.3 1.5 21 72-92 19-39 (94)
9 2fho_A Spliceosomal protein SF 10.4 81 0.0028 22.1 0.8 17 52-68 20-36 (47)
10 3lqv_P Splicing factor 3B subu 9.9 1.3E+02 0.0043 20.4 1.5 18 50-67 19-36 (39)
No 1
>1j23_A HEF nuclease, ATP-dependent RNA helicase, putative; structure-specific endonuclease, hydrolase; 1.78A {Pyrococcus furiosus} SCOP: c.52.1.20 PDB: 1j22_A 1j24_A 1j25_A
Probab=20.20 E-value=44 Score=27.39 Aligned_cols=40 Identities=20% Similarity=0.419 Sum_probs=29.9
Q ss_pred CCceeeeeeecchhHHHhh--hcc-cceeccccccEEEEEEEec
Q 022487 171 NDLSVERHRLENMELSFRN--LLG-KVTIQEPTFDRIIVLYRQA 211 (296)
Q Consensus 171 ~~~~veRi~l~~~~~s~kn--Lf~-k~tlQEPtF~rvVVlYR~~ 211 (296)
++..|||.++.+.-.|+++ |+. +..++. .|++.+++.-..
T Consensus 43 ~~~~VERKs~~DL~~Si~dgRl~~Q~~rL~~-~~~~~~~LIE~~ 85 (143)
T 1j23_A 43 EDVAIERKSANDLIQSIIDGGLFDQVKRLKE-AYSRPIMIVEGS 85 (143)
T ss_dssp SSEEEEEEEHHHHHHHHHTTCHHHHHHHHHH-HCSEEEEEEESC
T ss_pred CCcEEEeccHHHHHHhhhcchHHHHHHHHHh-cCCccEEEEEcC
Confidence 3689999999999888886 553 334555 688888887643
No 2
>1vry_A Glycine receptor alpha-1 chain; second transmembrane domain, third transmembrane domain, membrane protein; NMR {Homo sapiens} SCOP: j.35.1.1
Probab=17.86 E-value=1.9e+02 Score=21.69 Aligned_cols=32 Identities=19% Similarity=0.484 Sum_probs=23.9
Q ss_pred hhHHHHHHHHHHHHHHHHhhc--ccch------hHHHHHH
Q 022487 250 DWVKFLVSAVVGLVAVITSAQ--LHEI------DLWVGMA 281 (296)
Q Consensus 250 D~vk~~vsaVvglva~~~sl~--~~k~------d~~v~~a 281 (296)
.+|-+++.++..+.+..++.. +||. |+|.+..
T Consensus 3 aRv~LGittvLtmtt~~~~~~~~lPkVSYikAiDvw~~~C 42 (76)
T 1vry_A 3 ARVGLGITTVLTLTTQSSGSRASLPKVSYVKAIDIWLAVC 42 (76)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTTCCCSHHHHHHHHHTHHHH
T ss_pred ceEEechHHHHHHHHHhcCcccCCCCccchHHHHHHHHHH
Confidence 467889999999999888763 5554 8888443
No 3
>3udc_A Small-conductance mechanosensitive channel, C-TER peptide from small-conductance...; membrane protein; 3.35A {Thermoanaerobacter tengcongensis} PDB: 3t9n_A*
Probab=17.40 E-value=1.5e+02 Score=26.43 Aligned_cols=35 Identities=17% Similarity=0.204 Sum_probs=23.3
Q ss_pred HHHHHHHHHhhcccchhHHHHHHHHHHHHhhheee
Q 022487 259 VVGLVAVITSAQLHEIDLWVGMAILSTVIGYCAKT 293 (296)
Q Consensus 259 Vvglva~~~sl~~~k~d~~v~~aiLs~~~gy~~k~ 293 (296)
++|++.+++.+..+-..+.+.++++|+.+|..+|.
T Consensus 78 ~~~~~~~l~~~g~~~~~l~a~~g~~g~aig~a~q~ 112 (285)
T 3udc_A 78 FLAGASILKLFNIDMTSLLAVAGIGSLAIGFGAQN 112 (285)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555566778888888888888763
No 4
>2vv5_A MSCS, small-conductance mechanosensitive channel; ION transport, transmembrane, inner membrane, membrane struc membrane protein, membrane; 3.45A {Escherichia coli} SCOP: b.38.1.3 d.58.43.1 f.34.1.1 PDB: 2oau_A
Probab=15.99 E-value=1.5e+02 Score=26.51 Aligned_cols=44 Identities=9% Similarity=0.077 Sum_probs=28.0
Q ss_pred hhHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHhhheee
Q 022487 250 DWVKFLVSAVVGLVAVITSAQLHEIDLWVGMAILSTVIGYCAKT 293 (296)
Q Consensus 250 D~vk~~vsaVvglva~~~sl~~~k~d~~v~~aiLs~~~gy~~k~ 293 (296)
..+.-.+..+++++.+++.+..+-..+.+.++++|+.+|..+|.
T Consensus 70 ~~i~~~~i~~i~~~~~l~~~gi~~~~l~a~~g~~g~aig~a~q~ 113 (286)
T 2vv5_A 70 SALVRYGIIAFTLIAALGRVGVQTASVIAVLGAAGLVVGLALQG 113 (286)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCCSTTHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444555555556555567888888899999988764
No 5
>2ko6_A Uncharacterized protein YIHD; alpha protein, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri}
Probab=14.82 E-value=17 Score=28.51 Aligned_cols=26 Identities=23% Similarity=0.538 Sum_probs=19.3
Q ss_pred HHHHHHhhhccC-----------------CCCCCCCCeEEEEe
Q 022487 83 KLLKRYFEEHHH-----------------DHLPDFADKYVIFR 108 (296)
Q Consensus 83 ~ll~~f~~~~p~-----------------~~lp~f~d~~lIFr 108 (296)
.||+-+|.++|. .++.+..|.++|||
T Consensus 11 ELL~p~W~k~~dLnL~q~Lqkla~Eagf~g~l~~LtDdvlIYh 53 (89)
T 2ko6_A 11 ELLQPAWQKEPDFNLLQFLQKLAKESGFDGELADLTDDILIYH 53 (89)
T ss_dssp HHTHHHHHSSTTSCHHHHHHHHHHHTTCSSCTTSCCHHHHHHH
T ss_pred HHhcHHhhcCCCccHHHHHHHHHHHhCCCCchhhcccceeeee
Confidence 367777777776 34678888888887
No 6
>1u5t_B Defective in vacuolar protein sorting; VPS36P; ESCRT, endosomal, trafficking, protein complex, transport protein; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54
Probab=11.33 E-value=3.8e+02 Score=22.54 Aligned_cols=55 Identities=18% Similarity=0.101 Sum_probs=37.7
Q ss_pred HHHHHHHhcCCCCCCcccc-ccc-chHHHHHhhC---CCcccCHHHHHHHhcCcceeeec
Q 022487 18 TIMRICMQLFKSPISHFVM-FSY-FPFMQVMDKS---NFKITTDEEIDVALSGQYLLHLP 72 (296)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~-~~~-~~l~qlmekA---NF~~LS~~el~~Al~~~YLl~Lp 72 (296)
.|.-.|+..++.+...++- .-+ -++.....+| +-+.+|.+|+..|.+.==-+++|
T Consensus 19 qi~e~c~~~~~~~~~~~GG~~I~L~dl~~~~nra~R~g~~lISp~Dl~~A~~~l~~Lg~~ 78 (169)
T 1u5t_B 19 EIYEFTLSEFKDLNSDTNYMIITLVDLYAMYNKSMRIGTGLISPMEMREACERFEHLGLN 78 (169)
T ss_dssp HHHHHHHTTTTTSSSCCCCCCEETTHHHHHHHHTTTSSSCCCCHHHHHHHHTTTGGGTCC
T ss_pred HHHHHHhhcchhhHHhcCceeEEHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHhcCCC
Confidence 3455666555545666664 666 5888889888 88999999998886543334444
No 7
>2ccq_A P97, peptide N-glycanase homolog; glycoprotein; 1.6A {Homo sapiens} SCOP: d.314.1.1 PDB: 2hpl_A 2hpj_A 2cm0_A
Probab=11.02 E-value=1.6e+02 Score=22.83 Aligned_cols=55 Identities=11% Similarity=0.106 Sum_probs=37.9
Q ss_pred HHHHHHHHHhcCCCCCCccccccc--c--------hHHHHHhhCCCcccCHHHHHHHhcCcceeeeccccCcchhh
Q 022487 16 VITIMRICMQLFKSPISHFVMFSY--F--------PFMQVMDKSNFKITTDEEIDVALSGQYLLHLPITVNESKLD 81 (296)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~--~--------~l~qlmekANF~~LS~~el~~Al~~~YLl~Lpi~VD~~klD 81 (296)
+.+++.|.+..+.+|.-..-..+. | .-.++|..+||+.-. +. +-||-..+++.+.
T Consensus 25 L~k~l~Nil~~P~e~KyR~Ir~~N~~f~~~v~~~~G~~e~L~a~GF~~~~----------~~-l~lp~~~~~~~l~ 89 (99)
T 2ccq_A 25 LLTYADNILRNPNDEKYRSIRIGNTAFSTRLLPVRGAVECLFEMGFEEGE----------TH-LIFPKKASVEQLQ 89 (99)
T ss_dssp HHHHHHHHHHCTTCGGGGEEETTCHHHHHHTTTSTTHHHHHHHHTCEECS----------SE-EECCTTSCHHHHH
T ss_pred HHHHHHHHHcCCCCcccceeecCCHHHHHHhcCCccHHHHHHHccceeCC----------Ce-eecCCCCCHHHHH
Confidence 367888888888766553332222 3 557999999999763 22 6778888887776
No 8
>2ld7_A Histone deacetylase complex subunit SAP30; transcription; NMR {Mus musculus}
Probab=10.98 E-value=97 Score=24.35 Aligned_cols=21 Identities=24% Similarity=0.305 Sum_probs=18.5
Q ss_pred ccccCcchhhHHHHHHHhhhc
Q 022487 72 PITVNESKLDKKLLKRYFEEH 92 (296)
Q Consensus 72 pi~VD~~klD~~ll~~f~~~~ 92 (296)
.-.|||++|+..-|++|...+
T Consensus 19 ~p~vdf~kL~~~tLrrY~r~y 39 (94)
T 2ld7_A 19 TPEVDLYQLQVNTLRRYKRHF 39 (94)
T ss_dssp CCCCCCSSSCHHHHHHHHHHT
T ss_pred CCCcCHHHCCHHHHHHHHHHh
Confidence 345899999999999999886
No 9
>2fho_A Spliceosomal protein SF3B155; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=10.43 E-value=81 Score=22.06 Aligned_cols=17 Identities=29% Similarity=0.499 Sum_probs=14.7
Q ss_pred cccCHHHHHHHhcCcce
Q 022487 52 KITTDEEIDVALSGQYL 68 (296)
Q Consensus 52 ~~LS~~el~~Al~~~YL 68 (296)
+.||++||+.-|-+.|-
T Consensus 20 rpltDEeLD~~LP~GY~ 36 (47)
T 2fho_A 20 RPLSDEELDAMFPEGYK 36 (47)
T ss_dssp CCSCTTHHHHHSCTTEE
T ss_pred CCCCHHHHHHhCCCCCe
Confidence 88999999998887774
No 10
>3lqv_P Splicing factor 3B subunit 1; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} PDB: 2f9d_P 2f9j_P
Probab=9.87 E-value=1.3e+02 Score=20.36 Aligned_cols=18 Identities=28% Similarity=0.458 Sum_probs=14.8
Q ss_pred CCcccCHHHHHHHhcCcc
Q 022487 50 NFKITTDEEIDVALSGQY 67 (296)
Q Consensus 50 NF~~LS~~el~~Al~~~Y 67 (296)
.-+.||++|++.-|-+.|
T Consensus 19 RNrpltDEeLD~mLP~GY 36 (39)
T 3lqv_P 19 RNRPLSDEELDAMFPEGY 36 (39)
T ss_dssp TTCCCCHHHHHHTCCSSE
T ss_pred hcCCCCHHHHHHhCCCCc
Confidence 347899999999887766
Done!