Query 022487
Match_columns 296
No_of_seqs 86 out of 88
Neff 4.3
Searched_HMMs 13730
Date Mon Mar 25 06:16:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022487.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/022487hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1skyb1 a.69.1.1 (B:372-502) F 39.4 13 0.00094 28.4 3.9 53 41-94 44-99 (131)
2 d1fx0a1 a.69.1.1 (A:373-501) F 24.4 18 0.0013 27.4 2.4 70 24-94 25-99 (129)
3 d1kr7a_ a.1.1.4 (A:) Nerve tis 22.4 16 0.0012 26.4 1.6 21 75-95 2-22 (110)
4 d2jdia1 a.69.1.1 (A:380-510) F 21.5 25 0.0018 26.5 2.6 66 28-94 29-99 (131)
5 d2f06a1 d.58.18.11 (A:71-141) 21.4 20 0.0015 24.3 1.9 19 41-59 50-68 (71)
6 d2vv5a3 f.34.1.1 (A:27-112) Me 13.9 1.2E+02 0.0085 20.4 4.6 36 257-292 51-86 (86)
7 d1x64a2 g.39.1.3 (A:53-83) PDZ 11.6 19 0.0014 21.7 -0.4 9 115-123 10-18 (31)
8 d2disa1 d.58.7.1 (A:8-103) Hyp 10.3 39 0.0029 23.1 0.9 46 67-122 5-50 (96)
9 d1c7va_ a.39.1.5 (A:) Calcium 9.5 80 0.0059 20.3 2.3 29 36-64 18-46 (68)
10 d1gxqa_ a.4.6.1 (A:) PhoB {Esc 8.7 2.8E+02 0.02 18.9 5.3 61 40-112 36-98 (105)
No 1
>d1skyb1 a.69.1.1 (B:372-502) F1 ATP synthase alpha subunit, domain 3 {Bacillus sp., strain ps3 [TaxId: 1409]}
Probab=39.45 E-value=13 Score=28.40 Aligned_cols=53 Identities=15% Similarity=0.242 Sum_probs=46.2
Q ss_pred hHHHHHhhCCCcccCHHHH---HHHhcCcceeeeccccCcchhhHHHHHHHhhhccC
Q 022487 41 PFMQVMDKSNFKITTDEEI---DVALSGQYLLHLPITVNESKLDKKLLKRYFEEHHH 94 (296)
Q Consensus 41 ~l~qlmekANF~~LS~~el---~~Al~~~YLl~Lpi~VD~~klD~~ll~~f~~~~p~ 94 (296)
.+.++|...+|.++|-+|- =-|.+..||-++|+. +-.++...|++.+-..||+
T Consensus 44 rl~ElLKQ~q~sP~~v~eQv~iLyA~~~G~LD~Ipv~-~I~~fe~~ll~~l~~~~~~ 99 (131)
T d1skyb1 44 RTVEVLKQDLHQPIPVEKQVLIIYALTRGFLDDIPVE-DVRRFEKEFYLWLDQNGQH 99 (131)
T ss_dssp HHHHHHCCCTTCCCCHHHHHHHHHHTTTTTTTTSCGG-GHHHHHHHHHHHHHHGGGG
T ss_pred HHHHHHhCCCCCCcCHHHHHHHHHHHhCCccccCcHH-HHHHHHHHHHHHHHHhhHH
Confidence 7899999999999999994 469999999999986 7788888899877777776
No 2
>d1fx0a1 a.69.1.1 (A:373-501) F1 ATP synthase alpha subunit, domain 3 {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]}
Probab=24.37 E-value=18 Score=27.38 Aligned_cols=70 Identities=13% Similarity=-0.044 Sum_probs=51.0
Q ss_pred HhcCCCCCCccccc-cc-chHHHHHhhCCCcccCHHHH---HHHhcCcceeeeccccCcchhhHHHHHHHhhhccC
Q 022487 24 MQLFKSPISHFVMF-SY-FPFMQVMDKSNFKITTDEEI---DVALSGQYLLHLPITVNESKLDKKLLKRYFEEHHH 94 (296)
Q Consensus 24 ~~~~~~~~~~~~~~-~~-~~l~qlmekANF~~LS~~el---~~Al~~~YLl~Lpi~VD~~klD~~ll~~f~~~~p~ 94 (296)
-+...|-|+.|+.. .- -.+.++|...+|.++|.+|- =-|.+..||-++|+. +-.++..+++...-.+||+
T Consensus 25 aqfgsdlD~~t~~~l~rG~rl~ElLKQ~q~~Pl~v~eQv~iLyA~~~G~LD~ipv~-~I~~fe~~ll~~l~~~~~~ 99 (129)
T d1fx0a1 25 AQFASDLDKATQNQLARGQRLRELLKQPQSAPLTVEEQVMTIYTGTNGYLDSLELD-QVRKYLVELRTYVKTNKPE 99 (129)
T ss_dssp GGGCSSCCHHHHHHHHHHHHHHHHHCCCTTCCCCHHHHHHHHHHHHTTSSSSSCHH-HHHHHHHHHHHHHHHTCHH
T ss_pred HhhccchhHHHHHhhhHHHHHHHHHHcccccCCCHHHHHHHHHHHHcCccccCCHH-HHHHHHHHHHHHHHHhhHH
Confidence 33335555555532 22 38899999999999999984 468999999999986 5667777777776666665
No 3
>d1kr7a_ a.1.1.4 (A:) Nerve tissue mini-hemoglobin (neural globin) {Milky ribbon-worm (Cerebratulus lacteus) [TaxId: 6221]}
Probab=22.45 E-value=16 Score=26.41 Aligned_cols=21 Identities=19% Similarity=0.289 Sum_probs=19.6
Q ss_pred cCcchhhHHHHHHHhhhccCC
Q 022487 75 VNESKLDKKLLKRYFEEHHHD 95 (296)
Q Consensus 75 VD~~klD~~ll~~f~~~~p~~ 95 (296)
|+|+.+-+.+..++|.+||+-
T Consensus 2 ~swa~v~~~ff~~LF~~~Pe~ 22 (110)
T d1kr7a_ 2 VNWAAVVDDFYQELFKAHPEY 22 (110)
T ss_dssp CCHHHHHHHHHHHHHHHCGGG
T ss_pred CCHHHHHHHHHHHHHHHChHH
Confidence 789999999999999999994
No 4
>d2jdia1 a.69.1.1 (A:380-510) F1 ATP synthase alpha subunit, domain 3 {Cow (Bos taurus) [TaxId: 9913]}
Probab=21.52 E-value=25 Score=26.53 Aligned_cols=66 Identities=14% Similarity=0.133 Sum_probs=51.7
Q ss_pred CCCCCccccccc--chHHHHHhhCCCcccCHHHH---HHHhcCcceeeeccccCcchhhHHHHHHHhhhccC
Q 022487 28 KSPISHFVMFSY--FPFMQVMDKSNFKITTDEEI---DVALSGQYLLHLPITVNESKLDKKLLKRYFEEHHH 94 (296)
Q Consensus 28 ~~~~~~~~~~~~--~~l~qlmekANF~~LS~~el---~~Al~~~YLl~Lpi~VD~~klD~~ll~~f~~~~p~ 94 (296)
.|.|..|+..-. -.+..+|...+|.++|-+|- =-|.+..||-++|+. +-.++...++..+-..||+
T Consensus 29 sdlD~~t~~~l~rG~rl~ElLKQ~q~~Pl~v~eQv~iL~A~~~G~lD~i~v~-~I~~fe~~ll~~l~~~~~~ 99 (131)
T d2jdia1 29 SDLDAATQQLLSRGVRLTELLKQGQYSPMAIEEQVAVIYAGVRGYLDKLEPS-KITKFENAFLSHVISQHQA 99 (131)
T ss_dssp SSSCHHHHHHHHHHHHHHHHTCCCSSCCCCHHHHHHHHHHHHTTTTTTSCGG-GHHHHHHHHHHHHHHTCHH
T ss_pred hhhhHHHHhhhhhHHHHHHHHhcccccchhHHHHHHHHHHHhcCCccccCHH-HHHHHHHHHHHHHHHhCHH
Confidence 555555553322 38899999999999998874 459999999999987 5888998999877777765
No 5
>d2f06a1 d.58.18.11 (A:71-141) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]}
Probab=21.38 E-value=20 Score=24.34 Aligned_cols=19 Identities=5% Similarity=0.347 Sum_probs=17.4
Q ss_pred hHHHHHhhCCCcccCHHHH
Q 022487 41 PFMQVMDKSNFKITTDEEI 59 (296)
Q Consensus 41 ~l~qlmekANF~~LS~~el 59 (296)
.-.++|+++||+.++++|+
T Consensus 50 ~a~~~L~~~G~~vl~~~dl 68 (71)
T d2f06a1 50 KCIEVLKEKKVDLLAASDL 68 (71)
T ss_dssp HHHHHHHHTTCEEECHHHH
T ss_pred HHHHHHHHCCCEEEchHhe
Confidence 5689999999999999986
No 6
>d2vv5a3 f.34.1.1 (A:27-112) Mechanosensitive channel protein MscS (YggB), transmembrane region {Escherichia coli [TaxId: 562]}
Probab=13.90 E-value=1.2e+02 Score=20.38 Aligned_cols=36 Identities=11% Similarity=0.191 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHhhcccchhHHHHHHHHHHHHhhhee
Q 022487 257 SAVVGLVAVITSAQLHEIDLWVGMAILSTVIGYCAK 292 (296)
Q Consensus 257 saVvglva~~~sl~~~k~d~~v~~aiLs~~~gy~~k 292 (296)
--++|++..++.+.-+-..+-+..+++|..+|..+|
T Consensus 51 i~~i~~~~~L~~~Gi~~t~l~a~~G~~gvaiGfa~Q 86 (86)
T d2vv5a3 51 IIAFTLIAALGRVGVQTASVIAVLGAAGLVVGLALQ 86 (86)
T ss_dssp HHHHHHHHHHHTTTCCSTTHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcC
Confidence 334455555566666666788888888988887765
No 7
>d1x64a2 g.39.1.3 (A:53-83) PDZ and LIM domain protein 3, PDLIM3 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=11.60 E-value=19 Score=21.66 Aligned_cols=9 Identities=44% Similarity=1.062 Sum_probs=7.1
Q ss_pred ccccchhhH
Q 022487 115 QTTDYFFME 123 (296)
Q Consensus 115 ~~~G~f~~e 123 (296)
+++|+||++
T Consensus 10 KqrG~Ffv~ 18 (31)
T d1x64a2 10 KQKGYFFVE 18 (31)
T ss_dssp TTSCCEEET
T ss_pred hhcceEEec
Confidence 688888875
No 8
>d2disa1 d.58.7.1 (A:8-103) Hypothetical protein FLJ20273 {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.30 E-value=39 Score=23.10 Aligned_cols=46 Identities=7% Similarity=0.192 Sum_probs=25.7
Q ss_pred ceeeeccccCcchhhHHHHHHHhhhccCCCCCCCCCeEEEEeccccccccccchhh
Q 022487 67 YLLHLPITVNESKLDKKLLKRYFEEHHHDHLPDFADKYVIFRRGIGVDQTTDYFFM 122 (296)
Q Consensus 67 YLl~Lpi~VD~~klD~~ll~~f~~~~p~~~lp~f~d~~lIFrRG~g~d~~~G~f~~ 122 (296)
|+=|||-.+++..+- +++.+|-. . ...+.+++.-.+..+.+||=|+
T Consensus 5 yV~nLp~~~te~~l~-~~f~~~g~---~------i~~v~~~~~~~~~~~~rg~aFV 50 (96)
T d2disa1 5 FIGGIPKMKKREEIL-EEIAKVTE---G------VLDVIVYASAADKMKNRGFAFV 50 (96)
T ss_dssp EEECCCTTSCHHHHH-HHHHHHST---T------EEEEECCSSSCTTTTTCCEEEE
T ss_pred EEcCCCCcCCHHHHH-HHHHHhCC---c------ceEEEEeeeccccccCCCeEEE
Confidence 566999998887763 44444431 1 0145555544444455555444
No 9
>d1c7va_ a.39.1.5 (A:) Calcium vector protein {Amphioxus (Branchiostoma lanceolatum) [TaxId: 7740]}
Probab=9.49 E-value=80 Score=20.30 Aligned_cols=29 Identities=24% Similarity=0.352 Sum_probs=23.1
Q ss_pred ccccchHHHHHhhCCCcccCHHHHHHHhc
Q 022487 36 MFSYFPFMQVMDKSNFKITTDEEIDVALS 64 (296)
Q Consensus 36 ~~~~~~l~qlmekANF~~LS~~el~~Al~ 64 (296)
.++.-.|.++|.+.+.+.+|++|++.-++
T Consensus 18 ~I~~~el~~~l~~~g~~~~s~~e~~~~~~ 46 (68)
T d1c7va_ 18 VIDFDEFKFIMQKVGEEPLTDAEVEEAMK 46 (68)
T ss_dssp EECHHHHHHHSSTTTTCCCCHHHHHHHHH
T ss_pred eEcHHHHHHHHHHhCCCCCCHHHHHHHHH
Confidence 45556888999999999999999976543
No 10
>d1gxqa_ a.4.6.1 (A:) PhoB {Escherichia coli [TaxId: 562]}
Probab=8.72 E-value=2.8e+02 Score=18.93 Aligned_cols=61 Identities=21% Similarity=0.385 Sum_probs=40.8
Q ss_pred chHHHHHhhCCCcccCHHHHHHHhcCcceeeeccccCcchhhHHH--HHHHhhhccCCCCCCCCCeEEEEecccc
Q 022487 40 FPFMQVMDKSNFKITTDEEIDVALSGQYLLHLPITVNESKLDKKL--LKRYFEEHHHDHLPDFADKYVIFRRGIG 112 (296)
Q Consensus 40 ~~l~qlmekANF~~LS~~el~~Al~~~YLl~Lpi~VD~~klD~~l--l~~f~~~~p~~~lp~f~d~~lIFrRG~g 112 (296)
|.+++.|-+..=+.+|.+++-.+.-+. ...++.+.+|..+ |++-+.+.+.. ++|.=-||.|
T Consensus 36 ~~lL~~L~~~~g~vvsr~~L~~~vw~~-----~~~~~~~~l~~~I~rLRkKl~~~~~~-------~~I~Tv~g~G 98 (105)
T d1gxqa_ 36 FKLLHFFMTHPERVYSREQLLNHVWGT-----NVYVEDRTVDVHIRRLRKALEPGGHD-------RMVQTVRGTG 98 (105)
T ss_dssp HHHHHHHHHSCSSEECHHHHHHHHTCS-----SSCCCTHHHHHHHHHHHHHHGGGTGG-------GGEEEETTTE
T ss_pred HHHHHHHHhCccccccHHHHhccccCC-----CCCCCCcchHHHHHHHHHHhccCCCC-------CcEEEEcCcc
Confidence 588888888888999999997765443 2245556666554 55555554443 5676667766
Done!