BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022490
(296 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1I5E|A Chain A, Crystal Structure Of Bacillus Caldolyticus Uracil
Phosphoribosyltransferase With Bound Ump
pdb|1I5E|B Chain B, Crystal Structure Of Bacillus Caldolyticus Uracil
Phosphoribosyltransferase With Bound Ump
Length = 209
Score = 115 bits (289), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 68/170 (40%), Positives = 106/170 (62%), Gaps = 5/170 (2%)
Query: 119 VFVPPHPLIKHWVSILRNEQTPCPIFRNAMAELGRLLMYEASRDWLPTVSGEIQSPMGVA 178
V+V HPLI+H ++ +R++ T FR + E+ L+ +E +RD LP EI++P+ A
Sbjct: 4 VYVFDHPLIQHKLTYIRDKNTGTKEFRELVDEVATLMAFEITRD-LPLEEVEIETPVSKA 62
Query: 179 SVEFIDPREPVAVIPILRAGLVLVEHASSILPAIKTYHLGISRDEETLQPSIYLNKLPEK 238
+ I ++ + VIPILRAG+ +V+ ++PA K H+G+ RD +TL+P Y KLP
Sbjct: 63 RAKVIAGKK-LGVIPILRAGIGMVDGILKLIPAAKVGHIGLYRDPQTLKPVEYYVKLPSD 121
Query: 239 FPEGSRIFVVDPMLATGGTVVAALNLVKECGVENKQIKVISAVAAPPALQ 288
E I +VDPMLATGG+ VAA++ +K+ G K IK + +AAP ++
Sbjct: 122 VEERDFI-IVDPMLATGGSAVAAIDALKKRGA--KSIKFMCLIAAPEGVK 168
>pdb|2E55|A Chain A, Structure Of Aq2163 Protein From Aquifex Aeolicus
pdb|2E55|B Chain B, Structure Of Aq2163 Protein From Aquifex Aeolicus
pdb|2E55|C Chain C, Structure Of Aq2163 Protein From Aquifex Aeolicus
pdb|2E55|D Chain D, Structure Of Aq2163 Protein From Aquifex Aeolicus
Length = 208
Score = 115 bits (287), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 67/172 (38%), Positives = 104/172 (60%), Gaps = 8/172 (4%)
Query: 124 HPLIKHWVSILRNEQTPCPIFRNAMAELGRLLMYEASRDWLPTVSGEIQSPMGVASVEFI 183
HPLIKH V+ R + T R + ELG +L+YEA +D L E+++ +G ++
Sbjct: 7 HPLIKHKVNTARIQDTSAEKLRKTLKELGFMLVYEALKDILLE-EKEVRTWIGNKRFNYL 65
Query: 184 DPREPVAVIPILRAGLVLVEHASSILPAIKTYHLGISRDEETLQPSIYLNKLPEKFPEGS 243
+ E + +PILRAGL +E A ++P K LGI R+EETL+ IY ++LPE +G
Sbjct: 66 NEEE-IVFVPILRAGLSFLEGALQVVPNAKVGFLGIKRNEETLESHIYYSRLPE--LKGK 122
Query: 244 RIFVVDPMLATGGTVVAAL-NLVKECGVENKQIKVISAVAAPPALQKLSENF 294
+ ++DPMLATGGT+ AL ++K + ++K + A+AAP L+++ E F
Sbjct: 123 IVVILDPMLATGGTLEVALREILKHSPL---KVKSVHAIAAPEGLKRIEEKF 171
>pdb|1O5O|A Chain A, Crystal Structure Of Uracil Phosphoribosyltransferase
(Tm0721) From Thermotoga Maritima At 2.30 A Resolution
pdb|1O5O|B Chain B, Crystal Structure Of Uracil Phosphoribosyltransferase
(Tm0721) From Thermotoga Maritima At 2.30 A Resolution
pdb|1O5O|C Chain C, Crystal Structure Of Uracil Phosphoribosyltransferase
(Tm0721) From Thermotoga Maritima At 2.30 A Resolution
pdb|1O5O|D Chain D, Crystal Structure Of Uracil Phosphoribosyltransferase
(Tm0721) From Thermotoga Maritima At 2.30 A Resolution
Length = 221
Score = 108 bits (271), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 63/177 (35%), Positives = 105/177 (59%), Gaps = 5/177 (2%)
Query: 119 VFVPPHPLIKHWVSILRNEQTPCPIFRNAMAELGRLLMYEASRDWLPTVSGEIQSPMGVA 178
+ V HPLIKH ++I+R++ T FR + E+ LL YEA+R L E+++P+
Sbjct: 16 LVVVDHPLIKHKLTIMRDKNTGPKEFRELLREITLLLAYEATR-HLKCEEVEVETPI-TK 73
Query: 179 SVEFIDPREPVAVIPILRAGLVLVEHASSILPAIKTYHLGISRDEETLQPSIYLNKLPEK 238
++ + + + V+PILRAGLV+ + +LP H+GI RD ETLQ Y KLP
Sbjct: 74 TIGYRINDKDIVVVPILRAGLVMADGILELLPNASVGHIGIYRDPETLQAVEYYAKLP-P 132
Query: 239 FPEGSRIFVVDPMLATGGTVVAALNLVKECGVENKQIKVISAVAAPPALQKLSENFH 295
+ +F++DPMLATG + + A+ ++KE G K+I +++ +AAP ++ + + +
Sbjct: 133 LNDDKEVFLLDPMLATGVSSIKAIEILKENGA--KKITLVALIAAPEGVEAVEKKYE 187
>pdb|1V9S|A Chain A, Crystal Structure Of Tt0130 Protein From Thermus
Thermophilus Hb8
pdb|1V9S|B Chain B, Crystal Structure Of Tt0130 Protein From Thermus
Thermophilus Hb8
pdb|1V9S|C Chain C, Crystal Structure Of Tt0130 Protein From Thermus
Thermophilus Hb8
pdb|1V9S|D Chain D, Crystal Structure Of Tt0130 Protein From Thermus
Thermophilus Hb8
Length = 208
Score = 105 bits (263), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 63/170 (37%), Positives = 103/170 (60%), Gaps = 5/170 (2%)
Query: 124 HPLIKHWVSILRNEQTPCPIFRNAMAELGRLLMYEASRDWLPTVSGEIQSPMGVASVEFI 183
HPL++H ++ LR+++T FR E+ L YEA RD L +++P+ A V+ +
Sbjct: 8 HPLVQHKLAHLRDKRTGPKDFRELAEEVAXLXAYEAXRD-LELEETTVETPIAPARVKVL 66
Query: 184 DPREPVAVIPILRAGLVLVEHASSILPAIKTYHLGISRDEETLQPSIYLNKLPEKFPEGS 243
++ +A++ ILRAGLV VE ++P + H+G+ RD E+L P Y KLP E
Sbjct: 67 SGKK-LALVAILRAGLVXVEGILKLVPHARVGHIGLYRDPESLNPVQYYIKLPPDIAE-R 124
Query: 244 RIFVVDPMLATGGTVVAALNLVKECGVENKQIKVISAVAAPPALQKLSEN 293
R F++DP LATGG+ AL+L+KE G +K+ + +AAP L++++++
Sbjct: 125 RAFLLDPXLATGGSASLALSLLKERGATG--VKLXAILAAPEGLERIAKD 172
>pdb|2EHJ|A Chain A, Structure Of Uracil Phosphoribosyl Transferase
pdb|2EHJ|B Chain B, Structure Of Uracil Phosphoribosyl Transferase
pdb|2EHJ|C Chain C, Structure Of Uracil Phosphoribosyl Transferase
pdb|2EHJ|D Chain D, Structure Of Uracil Phosphoribosyl Transferase
Length = 208
Score = 104 bits (260), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 63/169 (37%), Positives = 99/169 (58%), Gaps = 5/169 (2%)
Query: 124 HPLIKHWVSILRNEQTPCPIFRNAMAELGRLLMYEASRDWLPTVSGEIQSPMGVASVEFI 183
HPL+KH + ++R + FR +E+G LL YEA+ D L T I+ G ++ I
Sbjct: 8 HPLVKHKLGLMREQDISTKRFRELASEVGSLLTYEATAD-LETEKVTIEGWNGPVEIDQI 66
Query: 184 DPREPVAVIPILRAGLVLVEHASSILPAIKTYHLGISRDEETLQPSIYLNKLPEKFPEGS 243
++ + V+PILRAGL +++ +P+ + +G+ R+EETL+P Y KL E
Sbjct: 67 KGKK-ITVVPILRAGLGMMDGVLENVPSARISVVGMYRNEETLEPVPYFQKLVSNIDE-R 124
Query: 244 RIFVVDPMLATGGTVVAALNLVKECGVENKQIKVISAVAAPPALQKLSE 292
+VDPMLATGG+V+A ++L+K+ G + IKV+ VAAP + L +
Sbjct: 125 MALIVDPMLATGGSVIATIDLLKKAGCSS--IKVLVLVAAPEGIAALEK 171
>pdb|3DMP|A Chain A, 2.6 A Crystal Structure Of Uracil
Phosphoribosyltransferase From Burkholderia Pseudomallei
pdb|3DMP|B Chain B, 2.6 A Crystal Structure Of Uracil
Phosphoribosyltransferase From Burkholderia Pseudomallei
pdb|3DMP|C Chain C, 2.6 A Crystal Structure Of Uracil
Phosphoribosyltransferase From Burkholderia Pseudomallei
pdb|3DMP|D Chain D, 2.6 A Crystal Structure Of Uracil
Phosphoribosyltransferase From Burkholderia Pseudomallei
Length = 217
Score = 91.7 bits (226), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 105/175 (60%), Gaps = 7/175 (4%)
Query: 119 VFVPPHPLIKHWVSILRNEQTPCPIFRNAMAELGRLLMYEASRDWLPTVSGEIQSPMGVA 178
+F+ HPLI+H ++ +R++ T FR + E+ L+ YE +R+ LP + +++P+
Sbjct: 11 LFILDHPLIQHKLTHMRDKDTSTRTFRELLREITLLMGYEITRN-LPITTKRVETPLVEI 69
Query: 179 SVEFIDPREPVAVIPILRAGLVLVEHASSILPAIKTYHLGISRDEETLQPSIYLNKLPEK 238
I ++ +A++P+LRAG+ + + ++P+ + H+G+ R ++ +P YL +LP+
Sbjct: 70 DAPVIAGKK-LAIVPVLRAGVGMSDGLLELIPSARVGHIGVYRADDH-RPVEYLVRLPDL 127
Query: 239 FPEGSRIFVV-DPMLATGGTVVAALNLVKECGVENKQIKVISAVAAPPALQKLSE 292
RIF++ DPM+ATG + A++++K GV +++ ++ VAAP +Q +
Sbjct: 128 ---EDRIFILCDPMVATGYSAAHAIDVLKRRGVPGERLMFLALVAAPEGVQVFQD 179
>pdb|1BD3|D Chain D, Structure Of The Apo Uracil Phosphoribosyltransferase, 2
Mutant C128v
pdb|1BD3|C Chain C, Structure Of The Apo Uracil Phosphoribosyltransferase, 2
Mutant C128v
pdb|1BD3|B Chain B, Structure Of The Apo Uracil Phosphoribosyltransferase, 2
Mutant C128v
pdb|1BD3|A Chain A, Structure Of The Apo Uracil Phosphoribosyltransferase, 2
Mutant C128v
pdb|1BD4|D Chain D, Uprt-Uracil Complex
pdb|1BD4|C Chain C, Uprt-Uracil Complex
pdb|1BD4|B Chain B, Uprt-Uracil Complex
pdb|1BD4|A Chain A, Uprt-Uracil Complex
pdb|1JLS|B Chain B, Structure Of The Uracil Phosphoribosyltransferase
UracilCPR 2 MUTANT C128V
pdb|1JLS|A Chain A, Structure Of The Uracil Phosphoribosyltransferase
UracilCPR 2 MUTANT C128V
pdb|1JLS|D Chain D, Structure Of The Uracil Phosphoribosyltransferase
UracilCPR 2 MUTANT C128V
pdb|1JLS|C Chain C, Structure Of The Uracil Phosphoribosyltransferase
UracilCPR 2 MUTANT C128V
pdb|1JLR|A Chain A, Structure Of The Uracil Phosphoribosyltransferase Gtp
Complex 2 Mutant C128v
pdb|1JLR|B Chain B, Structure Of The Uracil Phosphoribosyltransferase Gtp
Complex 2 Mutant C128v
pdb|1JLR|D Chain D, Structure Of The Uracil Phosphoribosyltransferase Gtp
Complex 2 Mutant C128v
pdb|1JLR|C Chain C, Structure Of The Uracil Phosphoribosyltransferase Gtp
Complex 2 Mutant C128v
Length = 243
Score = 68.9 bits (167), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 89/168 (52%), Gaps = 3/168 (1%)
Query: 127 IKHWVSILRNEQTPCPIFRNAMAELGRLLMYEASRDWLPTVSGEIQSPMGVASVEFIDPR 186
++ ++I+R+++TP F L RLL+ EA + LP E+ +P+ V S +
Sbjct: 44 LRAMMTIIRDKETPKEEFVFYADRLIRLLIEEALNE-LPFQKKEVTTPLDV-SYHGVSFY 101
Query: 187 EPVAVIPILRAGLVLVEHASSILPAIKTYHLGISRDEETLQPSIYLNKLPEKFPEGSRIF 246
+ + I+RAG + ++ ++ + I RDE T +P + KLP E +
Sbjct: 102 SKICGVSIVRAGESMESGLRAVCRGVRIGKILIQRDETTAEPKLIYEKLPADIRE-RWVM 160
Query: 247 VVDPMLATGGTVVAALNLVKECGVENKQIKVISAVAAPPALQKLSENF 294
++DPM AT G+V A+ ++ GV+ ++I ++ +AAP ++++ + +
Sbjct: 161 LLDPMCATAGSVCKAIEVLLRLGVKEERIIFVNILAAPQGIERVFKEY 208
>pdb|1UPU|D Chain D, Structure Of The Uracil Phosphoribosyltransferase, Mutant
C128v, Bound To Product Uridine-1-Monophosphate (Ump)
pdb|1UPU|C Chain C, Structure Of The Uracil Phosphoribosyltransferase, Mutant
C128v, Bound To Product Uridine-1-Monophosphate (Ump)
pdb|1UPU|B Chain B, Structure Of The Uracil Phosphoribosyltransferase, Mutant
C128v, Bound To Product Uridine-1-Monophosphate (Ump)
pdb|1UPU|A Chain A, Structure Of The Uracil Phosphoribosyltransferase, Mutant
C128v, Bound To Product Uridine-1-Monophosphate (Ump)
pdb|1UPF|D Chain D, Structure Of The Uracil Phosphoribosyltransferase, Mutant
C128v Bound To The Drug 5-Fluorouracil
pdb|1UPF|C Chain C, Structure Of The Uracil Phosphoribosyltransferase, Mutant
C128v Bound To The Drug 5-Fluorouracil
pdb|1UPF|B Chain B, Structure Of The Uracil Phosphoribosyltransferase, Mutant
C128v Bound To The Drug 5-Fluorouracil
pdb|1UPF|A Chain A, Structure Of The Uracil Phosphoribosyltransferase, Mutant
C128v Bound To The Drug 5-Fluorouracil
Length = 224
Score = 68.6 bits (166), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 92/177 (51%), Gaps = 3/177 (1%)
Query: 118 LVFVPPHPLIKHWVSILRNEQTPCPIFRNAMAELGRLLMYEASRDWLPTVSGEIQSPMGV 177
+V + ++ ++I+R+++TP F L RLL+ EA + LP E+ +P+ V
Sbjct: 16 VVLMKQTAQLRAMMTIIRDKETPKEEFVFYADRLIRLLIEEALNE-LPFQKKEVTTPLDV 74
Query: 178 ASVEFIDPREPVAVIPILRAGLVLVEHASSILPAIKTYHLGISRDEETLQPSIYLNKLPE 237
S + + + I+RAG + ++ ++ + I RDE T +P + KLP
Sbjct: 75 -SYHGVSFYSKICGVSIVRAGESMESGLRAVCRGVRIGKILIQRDETTAEPKLIYEKLPA 133
Query: 238 KFPEGSRIFVVDPMLATGGTVVAALNLVKECGVENKQIKVISAVAAPPALQKLSENF 294
E + ++DPM AT G+V A+ ++ GV+ ++I ++ +AAP ++++ + +
Sbjct: 134 DIRE-RWVMLLDPMCATAGSVCKAIEVLLRLGVKEERIIFVNILAAPQGIERVFKEY 189
>pdb|1XTT|A Chain A, Sulfolobus Solfataricus Uracil Phosphoribosyltransferase
In Complex With Uridine 5'-Monophosphate (Ump)
pdb|1XTT|B Chain B, Sulfolobus Solfataricus Uracil Phosphoribosyltransferase
In Complex With Uridine 5'-Monophosphate (Ump)
pdb|1XTT|C Chain C, Sulfolobus Solfataricus Uracil Phosphoribosyltransferase
In Complex With Uridine 5'-Monophosphate (Ump)
pdb|1XTT|D Chain D, Sulfolobus Solfataricus Uracil Phosphoribosyltransferase
In Complex With Uridine 5'-Monophosphate (Ump)
pdb|1XTU|A Chain A, Sulfolobus Solfataricus Uracil Phosphoribosyltransferase
In Complex With Uridine 5'-Monophosphate (Ump) And
Cytidine 5'-Triphosphate (Ctp)
pdb|1XTU|B Chain B, Sulfolobus Solfataricus Uracil Phosphoribosyltransferase
In Complex With Uridine 5'-Monophosphate (Ump) And
Cytidine 5'-Triphosphate (Ctp)
pdb|1XTU|C Chain C, Sulfolobus Solfataricus Uracil Phosphoribosyltransferase
In Complex With Uridine 5'-Monophosphate (Ump) And
Cytidine 5'-Triphosphate (Ctp)
pdb|1XTU|D Chain D, Sulfolobus Solfataricus Uracil Phosphoribosyltransferase
In Complex With Uridine 5'-Monophosphate (Ump) And
Cytidine 5'-Triphosphate (Ctp)
pdb|1XTU|E Chain E, Sulfolobus Solfataricus Uracil Phosphoribosyltransferase
In Complex With Uridine 5'-Monophosphate (Ump) And
Cytidine 5'-Triphosphate (Ctp)
pdb|1XTU|F Chain F, Sulfolobus Solfataricus Uracil Phosphoribosyltransferase
In Complex With Uridine 5'-Monophosphate (Ump) And
Cytidine 5'-Triphosphate (Ctp)
pdb|1XTU|G Chain G, Sulfolobus Solfataricus Uracil Phosphoribosyltransferase
In Complex With Uridine 5'-Monophosphate (Ump) And
Cytidine 5'-Triphosphate (Ctp)
pdb|1XTU|H Chain H, Sulfolobus Solfataricus Uracil Phosphoribosyltransferase
In Complex With Uridine 5'-Monophosphate (Ump) And
Cytidine 5'-Triphosphate (Ctp)
pdb|1XTV|A Chain A, Sulfolobus Solfataricus Uracil Phosphoribosyltransferase
With Uridine 5'-Monophosphate (Ump) Bound To Half Of The
Subunits
pdb|1XTV|B Chain B, Sulfolobus Solfataricus Uracil Phosphoribosyltransferase
With Uridine 5'-Monophosphate (Ump) Bound To Half Of The
Subunits
pdb|1XTV|C Chain C, Sulfolobus Solfataricus Uracil Phosphoribosyltransferase
With Uridine 5'-Monophosphate (Ump) Bound To Half Of The
Subunits
pdb|1XTV|D Chain D, Sulfolobus Solfataricus Uracil Phosphoribosyltransferase
With Uridine 5'-Monophosphate (Ump) Bound To Half Of The
Subunits
pdb|1XTV|E Chain E, Sulfolobus Solfataricus Uracil Phosphoribosyltransferase
With Uridine 5'-Monophosphate (Ump) Bound To Half Of The
Subunits
pdb|1XTV|F Chain F, Sulfolobus Solfataricus Uracil Phosphoribosyltransferase
With Uridine 5'-Monophosphate (Ump) Bound To Half Of The
Subunits
pdb|1XTV|G Chain G, Sulfolobus Solfataricus Uracil Phosphoribosyltransferase
With Uridine 5'-Monophosphate (Ump) Bound To Half Of The
Subunits
pdb|1XTV|H Chain H, Sulfolobus Solfataricus Uracil Phosphoribosyltransferase
With Uridine 5'-Monophosphate (Ump) Bound To Half Of The
Subunits
pdb|1VST|A Chain A, Symmetric Sulfolobus Solfataricus Uracil
Phosphoribosyltransferase With Bound Prpp And Gtp
pdb|3G6W|A Chain A, Asymetric Gtp Bound Structure Of Uprtase From Sulfolobus
Solfataricus Containing Prpp-Mg2+ In Half Of The Active
Sites And R5p And Ppi In The Other Half
pdb|3G6W|B Chain B, Asymetric Gtp Bound Structure Of Uprtase From Sulfolobus
Solfataricus Containing Prpp-Mg2+ In Half Of The Active
Sites And R5p And Ppi In The Other Half
pdb|3G6W|C Chain C, Asymetric Gtp Bound Structure Of Uprtase From Sulfolobus
Solfataricus Containing Prpp-Mg2+ In Half Of The Active
Sites And R5p And Ppi In The Other Half
pdb|3G6W|D Chain D, Asymetric Gtp Bound Structure Of Uprtase From Sulfolobus
Solfataricus Containing Prpp-Mg2+ In Half Of The Active
Sites And R5p And Ppi In The Other Half
Length = 216
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 52/187 (27%), Positives = 93/187 (49%), Gaps = 13/187 (6%)
Query: 117 MLVFVPPHPLIKHWVSILRNEQTPCPIFRNAMAELGRLLMYEASRDWLPTVSGEIQSPMG 176
M ++V P+ H ++ LR++ T FR + LGR+L YE S + L E+++P+G
Sbjct: 1 MPLYVIDKPITLHILTQLRDKYTDQINFRKNLVRLGRILGYEIS-NTLDYEIVEVETPLG 59
Query: 177 VAS--VEFIDPREPVAVIPILRAGLVLVEHASSILPAIKTYHLGISRDE-------ETLQ 227
V + V+ D + +I ILRA + LVE P + +G SR E + +
Sbjct: 60 VKTKGVDITDLNN-IVIINILRAAVPLVEGLLKAFPKARQGVIGASRVEVDGKEVPKDMD 118
Query: 228 PSIYLNKLPEKFPEGSRIFVVDPMLATGGTVVAALNLVKECGVENKQIKVISAVAAPPAL 287
IY K+P+ + + + DPM+AT T++ L V + K+I ++S +++ +
Sbjct: 119 VYIYYKKIPDIRAKVDNVIIADPMIATASTMLKVLEEVVKA--NPKRIYIVSIISSEYGV 176
Query: 288 QKLSENF 294
K+ +
Sbjct: 177 NKILSKY 183
>pdb|1MZV|A Chain A, Crystal Structure Of Adenine Phosphoribosyltransferase
(Aprt) From Leishmania Tarentolae
Length = 235
Score = 35.4 bits (80), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 33/55 (60%), Gaps = 4/55 (7%)
Query: 241 EGSRIFVVDPMLATGGTVVAALNLVKECGVENKQIKVISAVAAPPALQKLSENFH 295
+ SR+ ++D +LATGGT ++ L LV+ G E ++++S + P K +E H
Sbjct: 138 KNSRVVLIDDVLATGGTALSGLQLVEASGAE--VVEMVSILTIP--FLKAAERIH 188
>pdb|1U9Y|A Chain A, Crystal Structure Of Phosphoribosyl Diphosphate Synthase
From Methanocaldococcus Jannaschii
pdb|1U9Y|B Chain B, Crystal Structure Of Phosphoribosyl Diphosphate Synthase
From Methanocaldococcus Jannaschii
pdb|1U9Y|C Chain C, Crystal Structure Of Phosphoribosyl Diphosphate Synthase
From Methanocaldococcus Jannaschii
pdb|1U9Y|D Chain D, Crystal Structure Of Phosphoribosyl Diphosphate Synthase
From Methanocaldococcus Jannaschii
pdb|1U9Z|A Chain A, Crystal Structure Of Phosphoribosyl Diphosphate Synthase
Complexed With Amp And Ribose 5-Phosphate
pdb|1U9Z|B Chain B, Crystal Structure Of Phosphoribosyl Diphosphate Synthase
Complexed With Amp And Ribose 5-Phosphate
pdb|1U9Z|C Chain C, Crystal Structure Of Phosphoribosyl Diphosphate Synthase
Complexed With Amp And Ribose 5-Phosphate
pdb|1U9Z|D Chain D, Crystal Structure Of Phosphoribosyl Diphosphate Synthase
Complexed With Amp And Ribose 5-Phosphate
Length = 284
Score = 35.4 bits (80), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 31/50 (62%), Gaps = 8/50 (16%)
Query: 245 IFVVDPMLATGGTVVAALNLVKECGVENKQIKVISAVAAP----PALQKL 290
+F+VD +++TGGT+ A+ L+KE G + K+I+A P AL KL
Sbjct: 208 VFIVDDIISTGGTMATAVKLLKEQGAK----KIIAACVHPVLIGDALNKL 253
>pdb|2DY0|A Chain A, Crystal Structure Of Project Jw0458 From Escherichia Coli
pdb|2DY0|B Chain B, Crystal Structure Of Project Jw0458 From Escherichia Coli
Length = 190
Score = 35.4 bits (80), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 21/30 (70%)
Query: 242 GSRIFVVDPMLATGGTVVAALNLVKECGVE 271
G ++ VVD +LATGGT+ A + L++ G E
Sbjct: 126 GDKVLVVDDLLATGGTIEATVKLIRRLGGE 155
>pdb|3MBI|A Chain A, Crystal Structure Of The Phosphoribosylpyrophosphate
(Prpp) Synthetase From Thermoplasma Volcanium In Complex
With Adp-Mg2+ And Ribose 5- Phosphate
pdb|3MBI|B Chain B, Crystal Structure Of The Phosphoribosylpyrophosphate
(Prpp) Synthetase From Thermoplasma Volcanium In Complex
With Adp-Mg2+ And Ribose 5- Phosphate
pdb|3MBI|C Chain C, Crystal Structure Of The Phosphoribosylpyrophosphate
(Prpp) Synthetase From Thermoplasma Volcanium In Complex
With Adp-Mg2+ And Ribose 5- Phosphate
pdb|3MBI|D Chain D, Crystal Structure Of The Phosphoribosylpyrophosphate
(Prpp) Synthetase From Thermoplasma Volcanium In Complex
With Adp-Mg2+ And Ribose 5- Phosphate
Length = 287
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 14/60 (23%), Positives = 31/60 (51%)
Query: 234 KLPEKFPEGSRIFVVDPMLATGGTVVAALNLVKECGVENKQIKVISAVAAPPALQKLSEN 293
K+P G ++ +VD +++TGGT+ + L++E G + + + + K+ +N
Sbjct: 197 KVPNVDVNGKKLLIVDDIISTGGTIAKSSGLLREKGASKIYVSAVHGLFVNGSENKILQN 256
>pdb|1QB7|A Chain A, Crystal Structures Of Adenine Phosphoribosyltransferase
From Leishmania Donovani.
pdb|1QB8|A Chain A, Crystal Structures Of Adenine Phosphoribosyltransferase
From Leishmania Donovani
pdb|1QCC|A Chain A, Crystal Structures Of Adenine Phosphoribosyltransferase
From Leishmania Donovani
pdb|1QCD|A Chain A, Crystal Structures Of Adenine Phosphoribosyltransferase
From Leishmania Donovani
Length = 236
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 34/55 (61%), Gaps = 4/55 (7%)
Query: 241 EGSRIFVVDPMLATGGTVVAALNLVKECGVENKQIKVISAVAAPPALQKLSENFH 295
+GSR+ ++D +LATGGT ++ L LV+ + ++++S ++ P K +E H
Sbjct: 137 KGSRVVLIDDVLATGGTALSGLQLVEAS--DAVVVEMVSILSIP--FLKAAEKIH 187
>pdb|3LPN|A Chain A, Crystal Structure Of The Phosphoribosylpyrophosphate
(Prpp) Synthetase From Thermoplasma Volcanium In Complex
With An Atp Analog (Ampcpp).
pdb|3LPN|B Chain B, Crystal Structure Of The Phosphoribosylpyrophosphate
(Prpp) Synthetase From Thermoplasma Volcanium In Complex
With An Atp Analog (Ampcpp).
pdb|3LRT|A Chain A, Crystal Structure Of The Phosphoribosyl Pyrophosphate
(Prpp) Synthetase From Thermoplasma Volcanium In Complex
With Adp.
pdb|3LRT|B Chain B, Crystal Structure Of The Phosphoribosyl Pyrophosphate
(Prpp) Synthetase From Thermoplasma Volcanium In Complex
With Adp.
pdb|3NAG|A Chain A, Crystal Structure Of The Phosphoribosylpyrophosphate
(Prpp) Synthetase From Thermoplasma Volcanium In Complex
With Adp
pdb|3NAG|B Chain B, Crystal Structure Of The Phosphoribosylpyrophosphate
(Prpp) Synthetase From Thermoplasma Volcanium In Complex
With Adp
Length = 286
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 14/60 (23%), Positives = 31/60 (51%)
Query: 234 KLPEKFPEGSRIFVVDPMLATGGTVVAALNLVKECGVENKQIKVISAVAAPPALQKLSEN 293
K+P G ++ +VD +++TGGT+ + L++E G + + + + K+ +N
Sbjct: 195 KVPNVDVNGKKLLIVDDIISTGGTIAKSSGLLREKGASKIYVSAVHGLFVNGSENKILQN 254
>pdb|3QW4|B Chain B, Structure Of Leishmania Donovani Ump Synthase
pdb|3QW4|C Chain C, Structure Of Leishmania Donovani Ump Synthase
Length = 453
Score = 33.5 bits (75), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 38/73 (52%), Gaps = 4/73 (5%)
Query: 227 QPSIYLNK--LPEKFPEGSRIFVVDPMLATGGTVVAALNLVKECGVENKQIKVI--SAVA 282
+ IY K + ++ +G R+ ++D +++TG T V A+ ++ G+E I V+ +
Sbjct: 348 EAKIYGTKAAIEGEYKKGDRVVIIDDLVSTGETKVEAIEKLRSAGLEVVSIVVLVDRDMG 407
Query: 283 APPALQKLSENFH 295
A L KL +F
Sbjct: 408 AKAFLNKLGYDFE 420
>pdb|3M3H|A Chain A, 1.75 Angstrom Resolution Crystal Structure Of An Orotate
Phosphoribosyltransferase From Bacillus Anthracis Str.
'ames Ancestor'
pdb|3OSC|A Chain A, 2.65 Angstrom Resolution Crystal Structure Of An Orotate
Phosphoribosyltransferase From Bacillus Anthracis Str.
'ames Ancestor' In Complex With
5-Phospho-Alpha-D-Ribosyl Diphosphate (Prpp)
pdb|3OSC|B Chain B, 2.65 Angstrom Resolution Crystal Structure Of An Orotate
Phosphoribosyltransferase From Bacillus Anthracis Str.
'ames Ancestor' In Complex With
5-Phospho-Alpha-D-Ribosyl Diphosphate (Prpp)
pdb|3OSC|C Chain C, 2.65 Angstrom Resolution Crystal Structure Of An Orotate
Phosphoribosyltransferase From Bacillus Anthracis Str.
'ames Ancestor' In Complex With
5-Phospho-Alpha-D-Ribosyl Diphosphate (Prpp)
Length = 234
Score = 32.3 bits (72), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 11/39 (28%), Positives = 25/39 (64%)
Query: 233 NKLPEKFPEGSRIFVVDPMLATGGTVVAALNLVKECGVE 271
N++ K +G ++ VV+ +++TGG+ + + ++E G E
Sbjct: 128 NQIEGKAEKGQKVVVVEDLISTGGSAITCVEALREAGCE 166
>pdb|1L1Q|A Chain A, Crystal Structure Of Aprtase From Giardia Lamblia
Complexed With 9- Deazaadenine
pdb|1L1R|A Chain A, Crystal Structure Of Aprtase From Giardia Lamblia
Complexed With 9- Deazaadenine, Mg2+ And Prpp
Length = 186
Score = 32.3 bits (72), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
Query: 249 DPMLATGGTVVAALNLVKECGV--ENKQIKVISAVAAPPALQKLSEN 293
D +LATGGT++AA+ L + GV EN I V+ + A +K+ +
Sbjct: 124 DDVLATGGTLLAAIELCETAGVKPENIYINVLYEIEALKGREKVGQK 170
>pdb|1ORE|A Chain A, Human Adenine Phosphoribosyltransferase
pdb|1ZN7|A Chain A, Human Adenine Phosphoribosyltransferase Complexed With
Prpp, Ade And R5p
pdb|1ZN7|B Chain B, Human Adenine Phosphoribosyltransferase Complexed With
Prpp, Ade And R5p
pdb|1ZN8|A Chain A, Human Adenine Phosphoribosyltransferase Complexed With
Amp, In Space Group P1 At 1.76 A Resolution
pdb|1ZN8|B Chain B, Human Adenine Phosphoribosyltransferase Complexed With
Amp, In Space Group P1 At 1.76 A Resolution
pdb|1ZN9|A Chain A, Human Adenine Phosphoribosyltransferase In Apo And Amp
Complexed Forms
pdb|1ZN9|B Chain B, Human Adenine Phosphoribosyltransferase In Apo And Amp
Complexed Forms
Length = 180
Score = 31.2 bits (69), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 19/30 (63%)
Query: 242 GSRIFVVDPMLATGGTVVAALNLVKECGVE 271
G R+ VVD +LATGGT+ AA L+ E
Sbjct: 120 GQRVVVVDDLLATGGTMNAACELLGRLQAE 149
>pdb|2WD0|A Chain A, Crystal Structure Of Nonsyndromic Deafness (Dfnb12)
Associated Mutant D124g Of Mouse Cadherin-23 Ec1-2
pdb|2WD0|C Chain C, Crystal Structure Of Nonsyndromic Deafness (Dfnb12)
Associated Mutant D124g Of Mouse Cadherin-23 Ec1-2
pdb|4AQA|A Chain A, Crystal Structure Of Deafness Associated Mutant Mouse
Cadherin-23 Ec1-2d124g And Protocadherin-15 Ec1-2 Form I
Length = 214
Score = 30.8 bits (68), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
Query: 203 EHASSILPAIKTYHLGISRDEETLQPSIYLNKLPEKFPEGSRIFVV---DPMLATGGTVV 259
+H I + G++ + T Y ++PE P G+ IF+V DP L GG+V+
Sbjct: 87 DHQGVITRKVNIQVGGVNDNAPTFHNQPYSVRIPENTPVGTPIFIVNATDPDLGAGGSVL 146
Query: 260 AAL 262
+
Sbjct: 147 YSF 149
>pdb|3MVS|A Chain A, Structure Of The N-Terminus Of Cadherin 23
Length = 210
Score = 28.1 bits (61), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 3/35 (8%)
Query: 231 YLNKLPEKFPEGSRIFVV---DPMLATGGTVVAAL 262
Y ++PE P G+ IF+V DP L GG+V+ +
Sbjct: 114 YSVRIPENTPVGTPIFIVNATDPDLGAGGSVLYSF 148
>pdb|2WCP|A Chain A, Crystal Structure Of Mouse Cadherin-23 Ec1-2
pdb|2WHV|A Chain A, Crystal Structure Of Mouse Cadherin-23 Ec1-2 (all Cation
Binding Sites Occupied By Calcium)
pdb|4APX|A Chain A, Crystal Structure Of Mouse Cadherin-23 Ec1-2 And
Protocadherin-15 Ec1-2 Form I
pdb|4AQ8|A Chain A, Crystal Structure Of Mouse Cadherin-23 Ec1-2 And
Protocadherin-15 Ec1-2 Form Ii
pdb|4AQ8|B Chain B, Crystal Structure Of Mouse Cadherin-23 Ec1-2 And
Protocadherin-15 Ec1-2 Form Ii
pdb|4AXW|A Chain A, Crystal Structure Of Mouse Cadherin-23 Ec1-2 And
Protocadherin-15 Ec1-2, Form I 2.2a
Length = 214
Score = 28.1 bits (61), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 3/35 (8%)
Query: 231 YLNKLPEKFPEGSRIFVV---DPMLATGGTVVAAL 262
Y ++PE P G+ IF+V DP L GG+V+ +
Sbjct: 115 YSVRIPENTPVGTPIFIVNATDPDLGAGGSVLYSF 149
>pdb|4AQE|A Chain A, Crystal Structure Of Deafness Associated Mutant Mouse
Cadherin-23 Ec1-2s70p And Protocadherin-15 Ec1-2 Form I
Length = 214
Score = 28.1 bits (61), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 3/35 (8%)
Query: 231 YLNKLPEKFPEGSRIFVV---DPMLATGGTVVAAL 262
Y ++PE P G+ IF+V DP L GG+V+ +
Sbjct: 115 YSVRIPENTPVGTPIFIVNATDPDLGAGGSVLYSF 149
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,090,017
Number of Sequences: 62578
Number of extensions: 296807
Number of successful extensions: 915
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 873
Number of HSP's gapped (non-prelim): 30
length of query: 296
length of database: 14,973,337
effective HSP length: 98
effective length of query: 198
effective length of database: 8,840,693
effective search space: 1750457214
effective search space used: 1750457214
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)