RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 022490
(296 letters)
>1bd3_D Uprtase, uracil phosphoribosyltransferase; glycosyltransferase;
1.93A {Toxoplasma gondii} SCOP: c.61.1.1 PDB: 1bd4_D
1jlr_A* 1jls_B* 1upf_D 1upu_D*
Length = 243
Score = 158 bits (402), Expect = 1e-47
Identities = 45/177 (25%), Positives = 92/177 (51%), Gaps = 3/177 (1%)
Query: 118 LVFVPPHPLIKHWVSILRNEQTPCPIFRNAMAELGRLLMYEASRDWLPTVSGEIQSPMGV 177
+V + ++ ++I+R+++TP F L RLL+ EA + LP E+ +P+ V
Sbjct: 35 VVLMKQTAQLRAMMTIIRDKETPKEEFVFYADRLIRLLIEEALNE-LPFQKKEVTTPLDV 93
Query: 178 ASVEFIDPREPVAVIPILRAGLVLVEHASSILPAIKTYHLGISRDEETLQPSIYLNKLPE 237
+ + + + I+RAG + ++ ++ + I RDE T +P + KLP
Sbjct: 94 S-YHGVSFYSKICGVSIVRAGESMESGLRAVCRGVRIGKILIQRDETTAEPKLIYEKLPA 152
Query: 238 KFPEGSRIFVVDPMLATGGTVVAALNLVKECGVENKQIKVISAVAAPPALQKLSENF 294
E + ++DPM AT G+V A+ ++ GV+ ++I ++ +AAP ++++ + +
Sbjct: 153 DIRE-RWVMLLDPMCATAGSVCKAIEVLLRLGVKEERIIFVNILAAPQGIERVFKEY 208
>1i5e_A Uracil phosphoribosyltransferase; salvage pathway; HET: U5P; 3.00A
{Bacillus caldolyticus} SCOP: c.61.1.1
Length = 209
Score = 155 bits (392), Expect = 1e-46
Identities = 66/178 (37%), Positives = 104/178 (58%), Gaps = 5/178 (2%)
Query: 117 MLVFVPPHPLIKHWVSILRNEQTPCPIFRNAMAELGRLLMYEASRDWLPTVSGEIQSPMG 176
V+V HPLI+H ++ +R++ T FR + E+ L+ +E +RD P EI++P+
Sbjct: 2 GKVYVFDHPLIQHKLTYIRDKNTGTKEFRELVDEVATLMAFEITRDL-PLEEVEIETPVS 60
Query: 177 VASVEFIDPREPVAVIPILRAGLVLVEHASSILPAIKTYHLGISRDEETLQPSIYLNKLP 236
A + I ++ VIPILRAG+ +V+ ++PA K H+G+ RD +TL+P Y KLP
Sbjct: 61 KARAKVIAGKKLG-VIPILRAGIGMVDGILKLIPAAKVGHIGLYRDPQTLKPVEYYVKLP 119
Query: 237 EKFPEGSRIFVVDPMLATGGTVVAALNLVKECGVENKQIKVISAVAAPPALQKLSENF 294
E +VDPMLATGG+ VAA++ +K+ G K IK + +AAP ++ +
Sbjct: 120 SDVEE-RDFIIVDPMLATGGSAVAAIDALKKRGA--KSIKFMCLIAAPEGVKAVETAH 174
>1v9s_A Uracil phosphoribosyltransferase; pyrimidine salvage,
oligomerization, structural genomics, RI structural
genomics/proteomics initiative; 2.10A {Thermus
thermophilus} SCOP: c.61.1.1
Length = 208
Score = 153 bits (387), Expect = 7e-46
Identities = 64/178 (35%), Positives = 108/178 (60%), Gaps = 5/178 (2%)
Query: 117 MLVFVPPHPLIKHWVSILRNEQTPCPIFRNAMAELGRLLMYEASRDWLPTVSGEIQSPMG 176
M + + HPL++H ++ LR+++T FR E+ L+ YEA RD +++P+
Sbjct: 1 MRITLVDHPLVQHKLAHLRDKRTGPKDFRELAEEVAMLMAYEAMRDL-ELEETTVETPIA 59
Query: 177 VASVEFIDPREPVAVIPILRAGLVLVEHASSILPAIKTYHLGISRDEETLQPSIYLNKLP 236
A V+ + + +A++ ILRAGLV+VE ++P + H+G+ RD E+L P Y KLP
Sbjct: 60 PARVKVL-SGKKLALVAILRAGLVMVEGILKLVPHARVGHIGLYRDPESLNPVQYYIKLP 118
Query: 237 EKFPEGSRIFVVDPMLATGGTVVAALNLVKECGVENKQIKVISAVAAPPALQKLSENF 294
E R F++DPMLATGG+ AL+L+KE G +K+++ +AAP L++++++
Sbjct: 119 PDIAE-RRAFLLDPMLATGGSASLALSLLKERGA--TGVKLMAILAAPEGLERIAKDH 173
>3dmp_A Uracil phosphoribosyltransferase; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid; 2.60A {Burkholderia pseudomallei}
Length = 217
Score = 151 bits (382), Expect = 5e-45
Identities = 48/176 (27%), Positives = 99/176 (56%), Gaps = 5/176 (2%)
Query: 119 VFVPPHPLIKHWVSILRNEQTPCPIFRNAMAELGRLLMYEASRDWLPTVSGEIQSPMGVA 178
+F+ HPLI+H ++ +R++ T FR + E+ L+ YE +R+ P + +++P+
Sbjct: 11 LFILDHPLIQHKLTHMRDKDTSTRTFRELLREITLLMGYEITRNL-PITTKRVETPLVEI 69
Query: 179 SVEFIDPREPVAVIPILRAGLVLVEHASSILPAIKTYHLGISRDEETLQPSIYLNKLPEK 238
I ++ ++P+LRAG+ + + ++P+ + H+G+ R ++ +P YL +LP+
Sbjct: 70 DAPVIAGKKLA-IVPVLRAGVGMSDGLLELIPSARVGHIGVYRADDH-RPVEYLVRLPDL 127
Query: 239 FPEGSRIFVVDPMLATGGTVVAALNLVKECGVENKQIKVISAVAAPPALQKLSENF 294
E + DPM+ATG + A++++K GV +++ ++ VAAP +Q +
Sbjct: 128 --EDRIFILCDPMVATGYSAAHAIDVLKRRGVPGERLMFLALVAAPEGVQVFQDAH 181
>1xtt_A Probable uracil phosphoribosyltransferase; tetramer, type 1
phosphoribosyltransferase, UMP complex; HET: U5P; 1.80A
{Sulfolobus solfataricus} SCOP: c.61.1.1 PDB: 1vst_A*
1xtu_A* 1xtv_A* 3g6w_A*
Length = 216
Score = 149 bits (378), Expect = 1e-44
Identities = 50/186 (26%), Positives = 89/186 (47%), Gaps = 11/186 (5%)
Query: 117 MLVFVPPHPLIKHWVSILRNEQTPCPIFRNAMAELGRLLMYEASRDWLPTVSGEIQSPMG 176
M ++V P+ H ++ LR++ T FR + LGR+L YE S L E+++P+G
Sbjct: 1 MPLYVIDKPITLHILTQLRDKYTDQINFRKNLVRLGRILGYEISN-TLDYEIVEVETPLG 59
Query: 177 VASV-EFIDPREPVAVIPILRAGLVLVEHASSILPAIKTYHLGISRDE-------ETLQP 228
V + I + +I ILRA + LVE P + +G SR E + +
Sbjct: 60 VKTKGVDITDLNNIVIINILRAAVPLVEGLLKAFPKARQGVIGASRVEVDGKEVPKDMDV 119
Query: 229 SIYLNKLPEKFPEGSRIFVVDPMLATGGTVVAALNLVKECGVENKQIKVISAVAAPPALQ 288
IY K+P+ + + + DPM+AT T++ L V + + I ++S +++ +
Sbjct: 120 YIYYKKIPDIRAKVDNVIIADPMIATASTMLKVLEEVVKANPKR--IYIVSIISSEYGVN 177
Query: 289 KLSENF 294
K+ +
Sbjct: 178 KILSKY 183
>1o5o_A Uracil phosphoribosyltransferase; TM0721, structural genomic PSI,
protein structure initiative, joint center for structu
genomics; HET: U5P; 2.30A {Thermotoga maritima} SCOP:
c.61.1.1
Length = 221
Score = 150 bits (379), Expect = 2e-44
Identities = 62/180 (34%), Positives = 103/180 (57%), Gaps = 5/180 (2%)
Query: 117 MLVFVPPHPLIKHWVSILRNEQTPCPIFRNAMAELGRLLMYEASRDWLPTVSGEIQSPMG 176
+ V HPLIKH ++I+R++ T FR + E+ LL YEA+R E+++P+
Sbjct: 14 KNLVVVDHPLIKHKLTIMRDKNTGPKEFRELLREITLLLAYEATRHL-KCEEVEVETPIT 72
Query: 177 VASVEFIDPREPVAVIPILRAGLVLVEHASSILPAIKTYHLGISRDEETLQPSIYLNKLP 236
+ + + + V+PILRAGLV+ + +LP H+GI RD ETLQ Y KLP
Sbjct: 73 KT-IGYRINDKDIVVVPILRAGLVMADGILELLPNASVGHIGIYRDPETLQAVEYYAKLP 131
Query: 237 EKFPEGSRIFVVDPMLATGGTVVAALNLVKECGVENKQIKVISAVAAPPALQKLSENFHG 296
+ +F++DPMLATG + + A+ ++KE G K+I +++ +AAP ++ + + +
Sbjct: 132 -PLNDDKEVFLLDPMLATGVSSIKAIEILKENGA--KKITLVALIAAPEGVEAVEKKYED 188
>2e55_A Uracil phosphoribosyltransferase; structural genomics; 2.15A
{Aquifex aeolicus}
Length = 208
Score = 146 bits (369), Expect = 3e-43
Identities = 64/177 (36%), Positives = 102/177 (57%), Gaps = 6/177 (3%)
Query: 118 LVFVPPHPLIKHWVSILRNEQTPCPIFRNAMAELGRLLMYEASRDWLPTVSGEIQSPMGV 177
++ HPLIKH V+ R + T R + ELG +L+YEA +D E+++ +G
Sbjct: 1 MIVELSHPLIKHKVNTARIQDTSAEKLRKTLKELGFMLVYEALKDI-LLEEKEVRTWIGN 59
Query: 178 ASVEFIDPREPVAVIPILRAGLVLVEHASSILPAIKTYHLGISRDEETLQPSIYLNKLPE 237
+++ + +PILRAGL +E A ++P K LGI R+EETL+ IY ++LPE
Sbjct: 60 KRFNYLNEE-EIVFVPILRAGLSFLEGALQVVPNAKVGFLGIKRNEETLESHIYYSRLPE 118
Query: 238 KFPEGSRIFVVDPMLATGGTVVAALNLVKECGVENKQIKVISAVAAPPALQKLSENF 294
+G + ++DPMLATGGT+ AL + + ++K + A+AAP L+++ E F
Sbjct: 119 L--KGKIVVILDPMLATGGTLEVALREILKHSP--LKVKSVHAIAAPEGLKRIEEKF 171
>2ehj_A Uracil phosphoribosyltransferase; structural genomics; 2.80A
{Escherichia coli}
Length = 208
Score = 142 bits (358), Expect = 1e-41
Identities = 63/176 (35%), Positives = 98/176 (55%), Gaps = 5/176 (2%)
Query: 119 VFVPPHPLIKHWVSILRNEQTPCPIFRNAMAELGRLLMYEASRDWLPTVSGEIQSPMGVA 178
+ HPL+KH + ++R + FR +E+G LL YEA+ D L T I+ G
Sbjct: 3 IVEVKHPLVKHKLGLMREQDISTKRFRELASEVGSLLTYEATAD-LETEKVTIEGWNGPV 61
Query: 179 SVEFIDPREPVAVIPILRAGLVLVEHASSILPAIKTYHLGISRDEETLQPSIYLNKLPEK 238
++ I + + V+PILRAGL +++ +P+ + +G+ R+EETL+P Y KL
Sbjct: 62 EIDQI-KGKKITVVPILRAGLGMMDGVLENVPSARISVVGMYRNEETLEPVPYFQKLVSN 120
Query: 239 FPEGSRIFVVDPMLATGGTVVAALNLVKECGVENKQIKVISAVAAPPALQKLSENF 294
E +VDPMLATGG+V+A ++L+K+ G IKV+ VAAP + L +
Sbjct: 121 IDE-RMALIVDPMLATGGSVIATIDLLKKAGC--SSIKVLVLVAAPEGIAALEKAH 173
>1wd5_A Hypothetical protein TT1426; structural genomics, riken structural
genomics/proteomics initiative, RSGI, unknown function;
HET: MES; 2.00A {Thermus thermophilus} SCOP: c.61.1.1
Length = 208
Score = 47.3 bits (112), Expect = 1e-06
Identities = 36/168 (21%), Positives = 67/168 (39%), Gaps = 21/168 (12%)
Query: 144 FRN---AMAELGRLLMYEASRDWL------------PTVSGEIQSPMGVASVEFI-DPRE 187
FR+ A A L L + V+ + + V V + P
Sbjct: 3 FRDRRHAGALLAEALAPLGLEAPVVLGLPRGGVVVADEVARRLGGELDVVLVRKVGAPGN 62
Query: 188 PVAVIPILRAGLVLVEHASSILPAIKTYHLGISR---DEETLQPSIYLNKLPEKFPEGSR 244
P + + G LV ++ A ++Y + D + Y P+ +G
Sbjct: 63 PEFALGAVGEGGELVLMPYALRYADQSYLEREAARQRDVLRKRAERYRRVRPKAARKGRD 122
Query: 245 IFVVDPMLATGGTVVAALNLVKECGVENKQIKVISAVAAPPALQKLSE 292
+ +VD +ATG ++ AAL++V + G +++ V VA+P A+++L
Sbjct: 123 VVLVDDGVATGASMEAALSVVFQEGP--RRVVVAVPVASPEAVERLKA 168
>1o57_A PUR operon repressor; purine operon repressor, helix-turn-helix
domain, phosphoribosyltranseferases, domain
recombination, DNA binding; HET: EPE P6G 2PE PG4 1PE;
2.20A {Bacillus subtilis} SCOP: a.4.5.40 c.61.1.1 PDB:
1p4a_A*
Length = 291
Score = 46.5 bits (111), Expect = 3e-06
Identities = 18/82 (21%), Positives = 33/82 (40%), Gaps = 13/82 (15%)
Query: 195 LRAGLVLVEHASSILPAIKT----YHLGISRDEETLQPSIYLNKLPEKF-PEGSRIFVVD 249
L +V+V + + T Y G S +T+ L ++ GS + ++D
Sbjct: 152 LNVPVVIVRKDNK-VTEGSTVSINYVSGSSNRIQTMS-------LAKRSMKTGSNVLIID 203
Query: 250 PMLATGGTVVAALNLVKECGVE 271
+ GGT+ +NL+ E
Sbjct: 204 DFMKAGGTINGMINLLDEFNAN 225
>1g2q_A Adenine phosphoribosyltransferase 1; dimer, single domain,
catalytic loop; 1.50A {Saccharomyces cerevisiae} SCOP:
c.61.1.1 PDB: 1g2p_A
Length = 187
Score = 45.2 bits (108), Expect = 4e-06
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 239 FPEGSRIFVVDPMLATGGTVVAALNLVKECGVE 271
P GS + +VD ++ATGG+ AA LV++
Sbjct: 119 IPAGSNVIIVDDIIATGGSAAAAGELVEQLEAN 151
>1zn8_A APRT, adenine phosphoribosyltransferase; glycosyltransferase,
purine salvage; HET: AMP; 1.76A {Homo sapiens} SCOP:
c.61.1.1 PDB: 1ore_A* 1zn7_A* 1zn9_A*
Length = 180
Score = 44.8 bits (107), Expect = 6e-06
Identities = 15/33 (45%), Positives = 19/33 (57%)
Query: 239 FPEGSRIFVVDPMLATGGTVVAALNLVKECGVE 271
G R+ VVD +LATGGT+ AA L+ E
Sbjct: 117 LEPGQRVVVVDDLLATGGTMNAACELLGRLQAE 149
>1y0b_A Xanthine phosphoribosyltransferase; purine metabolism, STRU
genomics, PSI, protein structure initative, midwest
center structural genomics; HET: G4P; 1.80A {Bacillus
subtilis} SCOP: c.61.1.1 PDB: 2fxv_A*
Length = 197
Score = 44.6 bits (106), Expect = 1e-05
Identities = 11/84 (13%), Positives = 27/84 (32%), Gaps = 4/84 (4%)
Query: 188 PVAVIPILRAGLVLVEHASSILPAIKTYHLGISRDEETLQPSIYLNKLPEKFPEGSRIFV 247
+ L +V S+ + + + I ++ + + +
Sbjct: 70 MTGLK--LGVPVVFARKHKSLTLTDNLLTASVYSFTKQTESQIAVSG--THLSDQDHVLI 125
Query: 248 VDPMLATGGTVVAALNLVKECGVE 271
+D LA G +++VK+ G
Sbjct: 126 IDDFLANGQAAHGLVSIVKQAGAS 149
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 45.8 bits (108), Expect = 1e-05
Identities = 63/382 (16%), Positives = 107/382 (28%), Gaps = 138/382 (36%)
Query: 7 EYPILSHGNHISQTPSHS--QTLPESDTIGCMACNINISIRCSTDTPRFAATCQLQLDSR 64
E L GN I H+ L + + + + I+ A +
Sbjct: 92 ENCYL-EGNDI-----HALAAKLLQEND-TTLVKTKEL-IKNY-----ITARIMAKRPFD 138
Query: 65 NPRSPLLLKLLPSPALTQRPNKIA-------------------YSSYTPR-RSYVTVRSH 104
+ L + A+ + ++ Y +Y + +
Sbjct: 139 KKSNSALFR-----AVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAE 193
Query: 105 MATEEKSISGDRMLVFVPPHPL-IKHWVSILRN-EQTP-----------CPI-------- 143
+E + D VF L I W L N TP CP+
Sbjct: 194 TLSELIRTTLDAEKVF--TQGLNILEW---LENPSNTPDKDYLLSIPISCPLIGVIQLAH 248
Query: 144 FRNAMAELGRLLMYEASRDWLPTVSG---EIQSPMGVASV----EFIDPREPVAVIPILR 196
+ LG R +L +G + + + +A F +V +
Sbjct: 249 YVVTAKLLG--FTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFV-----SVRKAIT 301
Query: 197 A----GLVLVEHA--SSILPAI-----------KTYHLGISR-DEETLQPSI-YLNKLPE 237
G+ E +S+ P+I + L IS +E +Q + N
Sbjct: 302 VLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNS--- 358
Query: 238 KFPEGSRIFVVDPMLATGGT--VVA-------ALN--LVKEC---GVENKQIK------V 277
P G ++ + L G VV+ LN L K G++ +I
Sbjct: 359 HLPAGKQVEIS---LVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLK 415
Query: 278 ISA----VAAPPALQKLSENFH 295
S VA+P FH
Sbjct: 416 FSNRFLPVASP---------FH 428
Score = 42.7 bits (100), Expect = 1e-04
Identities = 60/312 (19%), Positives = 91/312 (29%), Gaps = 92/312 (29%)
Query: 43 SIRCSTDTPR---FAATCQLQLDSRNPRSPLLLKLLPSP----ALTQRPNKIA--YSSYT 93
S+ P F A+ QLQ + K+LP P A P A +
Sbjct: 15 SLEHVLLVPTASFFIAS-QLQ-EQ-------FNKILPEPTEGFAADDEPTTPAELVGKFL 65
Query: 94 PRRSYVTVRSHMATEEKSISGDRMLVFV------------PPHPLIKHWVSILRNEQTPC 141
YV S + K D++L H L +L+ T
Sbjct: 66 ---GYV---SSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALA---AKLLQENDTTL 116
Query: 142 P----IFRN---AMAELGRLLMYEASRDWLPTV-SGEI--------QSPMGVASVEFIDP 185
+ +N A R +++ V G Q G F +
Sbjct: 117 VKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQ---GNTDDYFEEL 173
Query: 186 RE-----PVAVIP-ILRAGLVLVEHASSILPAIKTYHLGIS-----RDEETLQPSIYLNK 234
R+ V V I + L E + L A K + G++ + YL
Sbjct: 174 RDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLS 233
Query: 235 LPEKFPEGSRIFVVDPMLA-----------TGGTVVAALNLVKECGVENKQIKVISAVAA 283
+P P I V+ LA T G + + L G +++AVA
Sbjct: 234 IPISCP---LIGVIQ--LAHYVVTAKLLGFTPGELRSYL-----KGATGHSQGLVTAVA- 282
Query: 284 PPALQKLSENFH 295
A E+F
Sbjct: 283 -IAETDSWESFF 293
>1qb7_A APRT, adenine phosphoribosyltransferase; dinucleotide binding fold;
HET: ADE CIT; 1.50A {Leishmania donovani} SCOP: c.61.1.1
PDB: 1qb8_A* 1qcc_A* 1qcd_A 1mzv_A*
Length = 236
Score = 43.9 bits (104), Expect = 2e-05
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 239 FPEGSRIFVVDPMLATGGTVVAALNLVKECGVE 271
+GSR+ ++D +LATGGT ++ L LV+
Sbjct: 135 IGKGSRVVLIDDVLATGGTALSGLQLVEASDAV 167
>1vch_A Phosphoribosyltransferase-related protein; structural genomics,
riken structural genomics/proteomics initiative, RSGI;
1.94A {Thermus thermophilus} SCOP: c.61.1.1
Length = 175
Score = 43.2 bits (102), Expect = 2e-05
Identities = 9/42 (21%), Positives = 21/42 (50%)
Query: 230 IYLNKLPEKFPEGSRIFVVDPMLATGGTVVAALNLVKECGVE 271
++L++ + R+ +V ++A+G T+ A +V G
Sbjct: 108 LWLDRRFAEKLLNQRVVLVSDVVASGETMRAMEKMVLRAGGH 149
>2dy0_A APRT, adenine phosphoribosyltransferase; structural genomics,
NPPSFA, national project on protein structural and
functional analyses; 1.25A {Escherichia coli K12}
Length = 190
Score = 43.3 bits (103), Expect = 2e-05
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 239 FPEGSRIFVVDPMLATGGTVVAALNLVKECGVE 271
G ++ VVD +LATGGT+ A + L++ G E
Sbjct: 123 IKPGDKVLVVDDLLATGGTIEATVKLIRRLGGE 155
>1l1q_A Adenine phosphoribosyltransferase; aprtase, giardia lamblia, purine
metabolism, cataly transferase; HET: 9DA; 1.85A {Giardia
intestinalis} SCOP: c.61.1.1 PDB: 1l1r_A*
Length = 186
Score = 42.6 bits (101), Expect = 4e-05
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 239 FPEGSRIFVVDPMLATGGTVVAALNLVKECG 269
+ + D +LATGGT++AA+ L + G
Sbjct: 114 LGPHDVVLLHDDVLATGGTLLAAIELCETAG 144
>2xbu_A Hypoxanthine-guanine phosphoribosyltransferase;
glycosyltransferase, purine salvage, FLIP pepti; HET:
5GP; 1.80A {Saccharomyces cerevisiae} PDB: 2jkz_A*
2jky_A*
Length = 221
Score = 38.2 bits (88), Expect = 0.002
Identities = 19/115 (16%), Positives = 38/115 (33%), Gaps = 19/115 (16%)
Query: 183 IDPREPVAVIPILRAGLVLVEHASSILP------------AIKTYHLGISRDEETLQPSI 230
I +P +I I G + + L + Y S E + +
Sbjct: 25 IKNFKPDLIIAIGGGGFIPARILRTFLKEPGVPTIRIFAIILSLYEDLNSVGSEVEEVGV 84
Query: 231 YLNKLPEKFP-------EGSRIFVVDPMLATGGTVVAALNLVKECGVENKQIKVI 278
+++ G + +VD + T T+ AL+ +++ E + K I
Sbjct: 85 KVSRTQWIDYEQCKLDLVGKNVLIVDEVDDTRTTLHYALSELEKDAAEQAKAKGI 139
>1vdm_A Purine phosphoribosyltransferase; structural genomics, riken
structural genomics/proteomics initiative, RSGI; 2.50A
{Pyrococcus horikoshii} SCOP: c.61.1.1
Length = 153
Score = 37.2 bits (87), Expect = 0.002
Identities = 20/97 (20%), Positives = 38/97 (39%), Gaps = 12/97 (12%)
Query: 183 IDPREPVAVIPILRAGLV---LVEHASSILP----AIKTYHLGISRDEETLQPSIYLNKL 235
+ +P +I + R GL+ + H +P +K Y R E+ +
Sbjct: 22 LREYKPDVIIGVARGGLIPAVRLSHILGDIPLKVIDVKFYKGIDERGEK-----PVITIP 76
Query: 236 PEKFPEGSRIFVVDPMLATGGTVVAALNLVKECGVEN 272
+ R+ +VD + TG T+ + VK+ G +
Sbjct: 77 IHGDLKDKRVVIVDDVSDTGKTLEVVIEEVKKLGAKE 113
>3r5e_A Transaldolase; pentose phosphate pathway, TIM barrel fold,
transferase; 2.10A {Corynebacterium glutamicum}
Length = 360
Score = 35.6 bits (82), Expect = 0.015
Identities = 11/45 (24%), Positives = 19/45 (42%), Gaps = 2/45 (4%)
Query: 248 VDPMLA--TGGTVVAALNLVKECGVENKQIKVISAVAAPPALQKL 290
VDP ++ T+ A L + N IK+ + + PA+
Sbjct: 109 VDPRISADRDATLAQAKELWAKVDRPNVMIKIPATPGSLPAITDA 153
>1u9y_A RPPK;, ribose-phosphate pyrophosphokinase; PRPP synthase,
transferase; 2.65A {Methanocaldococcus jannaschii} SCOP:
c.61.1.2 c.61.1.2 PDB: 1u9z_A*
Length = 284
Score = 34.4 bits (80), Expect = 0.032
Identities = 17/52 (32%), Positives = 28/52 (53%)
Query: 241 EGSRIFVVDPMLATGGTVVAALNLVKECGVENKQIKVISAVAAPPALQKLSE 292
+ +F+VD +++TGGT+ A+ L+KE G + + V AL KL
Sbjct: 204 KDRDVFIVDDIISTGGTMATAVKLLKEQGAKKIIAACVHPVLIGDALNKLYS 255
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 34.4 bits (78), Expect = 0.042
Identities = 32/190 (16%), Positives = 60/190 (31%), Gaps = 59/190 (31%)
Query: 104 HMATEEKSIS---GDRMLVFVPPHPLIKHW---------VSILRNE------QTPCP--- 142
HM E D + VF + ++ SIL E +
Sbjct: 6 HMDFETGEHQYQYKDILSVFEDA--FVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSG 63
Query: 143 ------IFRNAMAELGRLLMYEASR---DWLPT-VSGEIQSPMGVASVEFIDPREPVAVI 192
+ E+ + + E R +L + + E + P + + +I+ R+ +
Sbjct: 64 TLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMM-TRMYIEQRDRLYND 122
Query: 193 PILRAGLVLVEHASSILPAIKTYHLGISRDEETLQPSIYLNKL-PEKFPEGSRIFVVDPM 251
Y+ +SR + L+ L +L P K ++D +
Sbjct: 123 N----------------QVFAKYN--VSRLQPYLKLRQALLELRPAKN------VLIDGV 158
Query: 252 LATGGTVVAA 261
L +G T VA
Sbjct: 159 LGSGKTWVAL 168
>3clm_A Transaldolase; YP_208650.1, structural genomics, joint cente
structural genomics, JCSG, protein structure initiative,
PS transferase; HET: MSE; 1.14A {Neisseria gonorrhoeae}
Length = 352
Score = 33.7 bits (77), Expect = 0.060
Identities = 17/45 (37%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
Query: 248 VDPMLA--TGGTVVAALNLVKECGVENKQIKVISAVAAPPALQKL 290
V P LA GTV A L +N IKV + A AL+ L
Sbjct: 109 VSPELAKDAQGTVEEARRLHAAIARKNAMIKVPATDAGIDALETL 153
>1dku_A Protein (phosphoribosyl pyrophosphate synthetase); open alpha-beta
structure, domain duplication, phosphoribosyltransferase
type I fold; HET: AP2 ABM; 2.20A {Bacillus subtilis}
SCOP: c.61.1.2 c.61.1.2 PDB: 1dkr_A* 1ibs_A*
Length = 317
Score = 32.5 bits (75), Expect = 0.12
Identities = 14/56 (25%), Positives = 29/56 (51%), Gaps = 8/56 (14%)
Query: 241 EGSRIFVVDPMLATGGTVVAALNLVKECGVENKQIKVIS----AVAAPPALQKLSE 292
EG ++D ++ T GT+ A N + E G + +V + V + PA+++++
Sbjct: 216 EGKTAILIDDIIDTAGTITLAANALVENGAK----EVYACCTHPVLSGPAVERINN 267
>3lrt_A Ribose-phosphate pyrophosphokinase; phosphoribosyl transferase, ATP
analog binding, ATP-binding, metal-binding, nucleotide
biosynthesis; HET: ADP; 1.53A {Thermoplasma volcanium}
PDB: 3lpn_A* 3nag_A* 3mbi_A*
Length = 286
Score = 32.1 bits (74), Expect = 0.16
Identities = 12/53 (22%), Positives = 28/53 (52%)
Query: 241 EGSRIFVVDPMLATGGTVVAALNLVKECGVENKQIKVISAVAAPPALQKLSEN 293
G ++ +VD +++TGGT+ + L++E G + + + + K+ +N
Sbjct: 202 NGKKLLIVDDIISTGGTIAKSSGLLREKGASKIYVSAVHGLFVNGSENKILQN 254
>2aee_A OPRT, oprtase, orotate phosphoribosyltransferase; structural
genomics, PSI, structure initiative; 1.95A
{Streptococcus pyogenes} SCOP: c.61.1.1
Length = 211
Score = 31.2 bits (71), Expect = 0.27
Identities = 8/40 (20%), Positives = 21/40 (52%)
Query: 239 FPEGSRIFVVDPMLATGGTVVAALNLVKECGVENKQIKVI 278
+G ++ +++ +++TGG+V+ A G + + I
Sbjct: 114 VLKGQKMVIIEDLISTGGSVLDAAAAASREGADVLGVVAI 153
>3dah_A Ribose-phosphate pyrophosphokinase; pyrophosphoki seattle
structural genomics center for infectious disease,
magnesium, metal binding; HET: AMP; 2.30A {Burkholderia
pseudomallei}
Length = 319
Score = 31.4 bits (72), Expect = 0.30
Identities = 13/52 (25%), Positives = 24/52 (46%)
Query: 241 EGSRIFVVDPMLATGGTVVAALNLVKECGVENKQIKVISAVAAPPALQKLSE 292
EG ++D M+ T GT+ A ++KE G + V + A +++
Sbjct: 215 EGRTCVIMDDMVDTAGTLCKAAQVLKERGAKQVFAYATHPVLSGGAADRIAA 266
>2p1z_A Phosphoribosyltransferase; STRU genomics, PSI-2, protein structure
initiative, midwest CENT structural genomics, MCSG;
2.44A {Corynebacterium diphtheriae}
Length = 180
Score = 30.7 bits (70), Expect = 0.34
Identities = 9/40 (22%), Positives = 19/40 (47%)
Query: 239 FPEGSRIFVVDPMLATGGTVVAALNLVKECGVENKQIKVI 278
G ++ VV+ TG + + A+ ++E G E + +
Sbjct: 111 DVVGKKVLVVEDTTTTGNSPLTAVKALREAGAEVVGVATV 150
>1nul_A XPRT, xanthine-guanine phosphoribosyltransferase; purine salvage
enzym; 1.80A {Escherichia coli} SCOP: c.61.1.1 PDB:
1a96_A* 1a95_A 1a98_A 1a97_A*
Length = 152
Score = 30.0 bits (68), Expect = 0.41
Identities = 20/81 (24%), Positives = 32/81 (39%), Gaps = 2/81 (2%)
Query: 187 EPVAVIPILRAGLVLVEHASSILPAIKTYHLGISRDEETLQPSIYLNKLPEKFPEGSRIF 246
+ +I + R GLV + L + IS + Q L L +G
Sbjct: 28 QWKGIIAVSRGGLVPGALLARELGIRHVDTVCISSYDHDNQRE--LKVLKRAEGDGEGFI 85
Query: 247 VVDPMLATGGTVVAALNLVKE 267
V+D ++ TGGT VA + +
Sbjct: 86 VIDDLVDTGGTAVAIREMYPK 106
>1a3c_A PYRR, pyrimidine operon regulatory protein PYRR; transcription
regulation, attenuation protein, RNA-binding P
pyrimidine biosynthesis; 1.60A {Bacillus subtilis} SCOP:
c.61.1.1 PDB: 1a4x_A 2igb_A* 1xz8_A* 1non_A 1xzn_A*
Length = 181
Score = 30.4 bits (69), Expect = 0.43
Identities = 12/51 (23%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Query: 219 ISRDEETLQPSIYLNKLPEKFPEGSRIFVVDPMLATGGTVVAALNLVKECG 269
+S+ +P + +P ++ +VD +L TG TV A ++ + + G
Sbjct: 76 LSKKTSNDEPLVKGADIPVDI-TDQKVILVDDVLYTGRTVRAGMDALVDVG 125
>3m3h_A OPRT, oprtase, orotate phosphoribosyltransferase; pyrimidine
ribonucleotide biosynthesis, structural genomics,
infectious diseases; 1.75A {Bacillus anthracis} PDB:
3osc_A*
Length = 234
Score = 30.5 bits (69), Expect = 0.45
Identities = 11/40 (27%), Positives = 23/40 (57%)
Query: 239 FPEGSRIFVVDPMLATGGTVVAALNLVKECGVENKQIKVI 278
+G ++ VV+ +++TGG+ + + ++E G E I I
Sbjct: 134 AEKGQKVVVVEDLISTGGSAITCVEALREAGCEVLGIVSI 173
>2ji4_A Phosphoribosyl pyrophosphate synthetase-associated protein 2;
phosphorylation, nucleotide biosynthesis, transferase;
2.55A {Homo sapiens} PDB: 2c4k_A*
Length = 379
Score = 30.8 bits (70), Expect = 0.47
Identities = 12/54 (22%), Positives = 26/54 (48%), Gaps = 4/54 (7%)
Query: 241 EGSRIFVVDPMLATGGTVVAALNLVKECGVENKQIKVIS--AVAAPPALQKLSE 292
G +VD ++ + +AA +KE G +I V++ + + A +++ E
Sbjct: 271 GGRIAIIVDDIIDDVDSFLAAAETLKERGA--YKIFVMATHGLLSSDAPRRIEE 322
>2ps1_A Orotate phosphoribosyltransferase 1; alpha beta, oprtase-OA-PRPP
complex; HET: ORO PRP; 1.75A {Saccharomyces cerevisiae}
PDB: 2pry_A* 2prz_A*
Length = 226
Score = 30.6 bits (69), Expect = 0.53
Identities = 6/41 (14%), Positives = 15/41 (36%)
Query: 238 KFPEGSRIFVVDPMLATGGTVVAALNLVKECGVENKQIKVI 278
E RI ++D ++ G + A ++ + +
Sbjct: 121 SALENKRILIIDDVMTAGTAINEAFEIISNAKGQVVGSIIA 161
>3s5j_B Ribose-phosphate pyrophosphokinase 1; nucleotide synthesis,
transferase; 2.02A {Homo sapiens} PDB: 2hcr_A* 3efh_A
2h06_A 2h07_A 2h08_A
Length = 326
Score = 30.6 bits (70), Expect = 0.59
Identities = 10/52 (19%), Positives = 22/52 (42%)
Query: 241 EGSRIFVVDPMLATGGTVVAALNLVKECGVENKQIKVISAVAAPPALQKLSE 292
+ +VD M T GT+ A + + G + + + PA+ +++
Sbjct: 212 KDRVAILVDDMADTCGTICHAADKLLSAGATRVYAILTHGIFSGPAISRINN 263
>2wns_A Orotate phosphoribosyltransferase; alternative splicing,
multifunctional enzyme, lyase, polymorphism,
decarboxylase, phosphoprotein; HET: OMP; 1.90A {Homo
sapiens}
Length = 205
Score = 29.9 bits (68), Expect = 0.76
Identities = 5/40 (12%), Positives = 21/40 (52%)
Query: 239 FPEGSRIFVVDPMLATGGTVVAALNLVKECGVENKQIKVI 278
G +++ ++ +G +V+ + ++++ G++ V+
Sbjct: 108 INPGETCLIIEDVVTSGSSVLETVEVLQKEGLKVTDAIVL 147
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.1 bits (64), Expect = 1.1
Identities = 9/30 (30%), Positives = 14/30 (46%), Gaps = 8/30 (26%)
Query: 232 LNKLPEKFPEGS-RIFVVD--PMLATGGTV 258
L KL + S +++ D P LA T+
Sbjct: 22 LKKL-----QASLKLYADDSAPALAIKATM 46
>3mjd_A Orotate phosphoribosyltransferase; IDP02311, csgid, structural
genomics, center for structural genomics of infectious
diseases; 1.90A {Francisella tularensis}
Length = 232
Score = 29.4 bits (66), Expect = 1.1
Identities = 4/41 (9%), Positives = 15/41 (36%)
Query: 238 KFPEGSRIFVVDPMLATGGTVVAALNLVKECGVENKQIKVI 278
++ ++D ++ G + N +K + + +
Sbjct: 132 ADMTNKKVLLIDDVMTAGTAFYESYNKLKIINAKIAGVVLS 172
>1ufr_A TT1027, PYR mRNA-binding attenuation protein; pyrimidine nucleotide
biosynthesis, transcriptional attenuation, RNA-binding
protein; 2.60A {Thermus thermophilus} SCOP: c.61.1.1
Length = 181
Score = 29.2 bits (66), Expect = 1.2
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
Query: 221 RD---EETLQPSIYLNKLPEKFPEGSRIFVVDPMLATGGTVVAALNLVKECG 269
RD E +P + ++P G I +VD +L TG T AAL+ + + G
Sbjct: 73 RDDLTEIGYRPQVRETRIPFD-LTGKAIVLVDDVLYTGRTARAALDALIDLG 123
>1hp1_A 5'-nucleotidase; metallophosphatase, dinuclear, metalloenzyme,
hydrolase, domain movement; HET: ATP; 1.70A {Escherichia
coli} SCOP: d.114.1.1 d.159.1.2 PDB: 1ush_A 2ush_A
1hpu_A* 1ho5_A* 1oi8_A 1oid_A 1oie_A
Length = 516
Score = 29.2 bits (66), Expect = 1.9
Identities = 18/81 (22%), Positives = 29/81 (35%), Gaps = 8/81 (9%)
Query: 170 EIQSPMGVASVEFIDPREPV-AVIPILRAGLVLVEHASSILPAIKTYHLGISRDEETLQP 228
+I +P +EF P + VI L+ E I I H+G + E
Sbjct: 152 KIGNPEYFTDIEFRKPADEAKLVIQELQQT----EKPDII---IAATHMGHYDNGEHGSN 204
Query: 229 SIYLNKLPEKFPEGSRIFVVD 249
+ ++ P GS +V
Sbjct: 205 APGDVEMARALPAGSLAMIVG 225
>1w30_A PYRR bifunctional protein; transferase, glycosyltransferase, PSI,
protein structure initiative, TB structural genomics
consortium, TB; 1.9A {Mycobacterium tuberculosis} SCOP:
c.61.1.1
Length = 201
Score = 28.6 bits (64), Expect = 2.0
Identities = 8/29 (27%), Positives = 20/29 (68%)
Query: 241 EGSRIFVVDPMLATGGTVVAALNLVKECG 269
+ + + +VD +L +G +V +AL+ +++ G
Sbjct: 111 DDALVILVDDVLYSGRSVRSALDALRDVG 139
>3qfk_A Uncharacterized protein; structural genomics, center for structural
genomics of infec diseases, csgid, phosphoesterase,
hydrolase; HET: MSE AKG; 2.05A {Staphylococcus aureus
subsp}
Length = 527
Score = 28.9 bits (65), Expect = 2.2
Identities = 12/60 (20%), Positives = 24/60 (40%), Gaps = 14/60 (23%)
Query: 173 SPMGVASVEFIDPREPV-AVIPILRAG--LVLVEHASSILPAIKTYHLGISRDEETLQPS 229
P + S+ F E + +P ++ +++V YH G +D E+ P+
Sbjct: 172 QPEHIQSLTFHSAFEILQQYLPEMKRHADIIVV-----------CYHGGFEKDLESGTPT 220
>3ive_A Nucleotidase; structural genomics, PSI-2, protein structure
initiative, NEW YORK SGX research center for structural
genomics, nysgxrc; HET: CTN; 1.70A {Escherichia coli O6}
PDB: 3ivd_A*
Length = 509
Score = 28.1 bits (63), Expect = 3.7
Identities = 7/61 (11%), Positives = 18/61 (29%), Gaps = 10/61 (16%)
Query: 170 EIQSPMGVASVEFIDPREPV-AVIPILRAGLVLVEHASSILPAIKTYHLGISRDEETLQP 228
+ S +E D + + I L+ + H G+ + ++
Sbjct: 156 DTVSAATRVGIEARDEIKWLQRYIDELKGK------VDLT---VALIHEGVPARQSSMGG 206
Query: 229 S 229
+
Sbjct: 207 T 207
>2yzk_A OPRT, oprtase, orotate phosphoribosyltransferase; rossmann fold,
glycosyltransferase, magnesium, pyrimidine biosynthesis,
structural genomics; 1.80A {Aeropyrum pernix}
Length = 178
Score = 27.2 bits (61), Expect = 4.4
Identities = 10/46 (21%), Positives = 20/46 (43%)
Query: 233 NKLPEKFPEGSRIFVVDPMLATGGTVVAALNLVKECGVENKQIKVI 278
E P R+ VVD + TG ++ ++ +++ G V+
Sbjct: 97 LSQVEGDPPKGRVVVVDDVATTGTSIAKSIEVLRSNGYTVGTALVL 142
>3gve_A YFKN protein; alpha-beta-BETA-alpha sandwich, structural genomics,
PSI-2, structure initiative; HET: CIT; 1.25A {Bacillus
subtilis subsp}
Length = 341
Score = 27.8 bits (62), Expect = 5.2
Identities = 15/63 (23%), Positives = 22/63 (34%), Gaps = 9/63 (14%)
Query: 180 VEFIDPREPV-AVIPILRAGLVLVEHASSILPAIKTYHLGISRDEETLQPSIYLNKLPEK 238
V+ D E IP ++A E A I I H GI + ++ + L K
Sbjct: 187 VQVQDIVESANETIPKMKA-----EGADVI---IALAHTGIEKQAQSSGAENAVFDLATK 238
Query: 239 FPE 241
Sbjct: 239 TKG 241
>3lu0_D DNA-directed RNA polymerase subunit beta'; E. coli RNA polymerase,
nucleotidyltransferase, transcription, transferase;
11.20A {Escherichia coli} PDB: 3iyd_D*
Length = 1407
Score = 27.2 bits (61), Expect = 9.5
Identities = 17/95 (17%), Positives = 35/95 (36%), Gaps = 17/95 (17%)
Query: 166 TVSGEIQSPMGVASVEFIDPREPVAVIPILRAGLVLVEHASSILPAIKTYHLGISRDEET 225
T++ + G++S+ +D E A LR L +V+ + + T
Sbjct: 1045 TITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQGNDV-----------LIPGT 1093
Query: 226 LQPSIYLNKLPEKFPEGSRIFVVDPMLATGGTVVA 260
P+ Y P + + + D + + G +A
Sbjct: 1094 DMPAQYF------LPGKAIVQLEDGVQISSGDTLA 1122
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.134 0.402
Gapped
Lambda K H
0.267 0.0797 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,442,124
Number of extensions: 261468
Number of successful extensions: 533
Number of sequences better than 10.0: 1
Number of HSP's gapped: 511
Number of HSP's successfully gapped: 49
Length of query: 296
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 203
Effective length of database: 4,105,140
Effective search space: 833343420
Effective search space used: 833343420
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (25.6 bits)