Query 022491
Match_columns 296
No_of_seqs 184 out of 1380
Neff 8.1
Searched_HMMs 46136
Date Fri Mar 29 03:57:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022491.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022491hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00434 cytosolic glyceraldeh 100.0 1.5E-78 3.2E-83 552.6 28.5 290 5-296 2-307 (361)
2 PRK15425 gapA glyceraldehyde-3 100.0 4.8E-76 1E-80 536.2 31.8 288 5-296 1-289 (331)
3 PTZ00023 glyceraldehyde-3-phos 100.0 6.8E-76 1.5E-80 536.4 31.2 290 5-296 1-293 (337)
4 PLN02237 glyceraldehyde-3-phos 100.0 3.5E-75 7.5E-80 542.0 29.6 289 5-296 74-368 (442)
5 PRK07403 glyceraldehyde-3-phos 100.0 5.2E-75 1.1E-79 529.9 30.0 287 6-296 1-292 (337)
6 PLN02358 glyceraldehyde-3-phos 100.0 1.5E-74 3.2E-79 529.5 32.9 294 1-296 1-295 (338)
7 PLN02272 glyceraldehyde-3-phos 100.0 1.3E-74 2.8E-79 537.7 32.2 289 7-296 86-374 (421)
8 PLN03096 glyceraldehyde-3-phos 100.0 2E-74 4.3E-79 534.1 30.2 289 5-296 59-350 (395)
9 PRK07729 glyceraldehyde-3-phos 100.0 5.8E-74 1.3E-78 523.5 30.0 288 5-296 1-290 (343)
10 TIGR01534 GAPDH-I glyceraldehy 100.0 2.2E-72 4.8E-77 513.0 30.6 286 8-296 1-290 (327)
11 PTZ00353 glycosomal glyceralde 100.0 2E-72 4.4E-77 513.2 29.7 290 5-296 1-293 (342)
12 PRK08955 glyceraldehyde-3-phos 100.0 8.8E-72 1.9E-76 510.5 29.4 287 5-296 1-290 (334)
13 PRK13535 erythrose 4-phosphate 100.0 1.1E-71 2.3E-76 509.8 29.2 286 7-296 2-292 (336)
14 COG0057 GapA Glyceraldehyde-3- 100.0 1.5E-71 3.2E-76 497.4 28.0 287 6-296 1-290 (335)
15 PRK08289 glyceraldehyde-3-phos 100.0 1.4E-69 3E-74 505.2 29.4 288 7-296 128-429 (477)
16 TIGR01532 E4PD_g-proteo D-eryt 100.0 4.4E-69 9.5E-74 492.4 30.3 285 8-296 1-290 (325)
17 KOG0657 Glyceraldehyde 3-phosp 100.0 1.4E-50 3E-55 350.8 11.4 256 28-288 8-263 (285)
18 TIGR01546 GAPDH-II_archae glyc 100.0 2E-41 4.4E-46 309.5 23.0 234 9-272 1-243 (333)
19 PRK14874 aspartate-semialdehyd 100.0 1.6E-40 3.5E-45 307.5 22.2 229 7-270 2-268 (334)
20 PRK04207 glyceraldehyde-3-phos 100.0 3.1E-39 6.7E-44 299.2 22.6 251 6-287 1-264 (341)
21 PRK08040 putative semialdehyde 100.0 7.4E-39 1.6E-43 294.4 23.9 235 1-271 1-268 (336)
22 TIGR01296 asd_B aspartate-semi 100.0 2.8E-39 6.1E-44 299.2 20.5 231 8-271 1-272 (339)
23 COG0002 ArgC Acetylglutamate s 100.0 2.1E-39 4.6E-44 292.4 18.0 239 5-274 1-273 (349)
24 PRK05671 aspartate-semialdehyd 100.0 7.7E-39 1.7E-43 295.0 20.9 236 1-271 1-269 (336)
25 PRK06728 aspartate-semialdehyd 100.0 1.3E-38 2.9E-43 292.8 22.0 236 1-272 1-278 (347)
26 PRK06598 aspartate-semialdehyd 100.0 2.4E-37 5.2E-42 286.0 20.8 235 7-271 2-300 (369)
27 PRK06901 aspartate-semialdehyd 100.0 2.7E-36 5.8E-41 272.1 22.4 234 7-273 4-256 (322)
28 TIGR00978 asd_EA aspartate-sem 100.0 5.1E-36 1.1E-40 278.3 22.9 255 7-289 1-282 (341)
29 PLN02383 aspartate semialdehyd 100.0 2.6E-36 5.6E-41 279.3 19.8 233 6-271 7-277 (344)
30 PF00044 Gp_dh_N: Glyceraldehy 100.0 8E-37 1.7E-41 250.4 13.5 149 7-157 1-151 (151)
31 COG0136 Asd Aspartate-semialde 100.0 5.5E-36 1.2E-40 270.5 20.1 233 6-267 1-265 (334)
32 TIGR01850 argC N-acetyl-gamma- 100.0 7.4E-36 1.6E-40 277.4 21.0 238 7-273 1-269 (346)
33 PRK08664 aspartate-semialdehyd 100.0 1.3E-35 2.9E-40 276.3 22.1 238 5-272 2-268 (349)
34 PRK00436 argC N-acetyl-gamma-g 100.0 2.6E-35 5.7E-40 273.6 22.5 238 5-273 1-266 (343)
35 TIGR01745 asd_gamma aspartate- 100.0 2.3E-35 5E-40 271.9 19.8 234 7-271 1-298 (366)
36 PRK11863 N-acetyl-gamma-glutam 100.0 5.5E-35 1.2E-39 265.7 21.3 218 5-273 1-238 (313)
37 TIGR01851 argC_other N-acetyl- 100.0 2.8E-34 6E-39 259.4 19.1 218 7-273 2-239 (310)
38 PLN02968 Probable N-acetyl-gam 100.0 1.1E-33 2.4E-38 264.8 19.9 235 5-273 37-304 (381)
39 smart00846 Gp_dh_N Glyceraldeh 100.0 5.1E-33 1.1E-37 228.2 16.6 148 7-157 1-149 (149)
40 PF02800 Gp_dh_C: Glyceraldehy 100.0 6E-33 1.3E-37 229.7 12.5 134 162-296 1-134 (157)
41 KOG4354 N-acetyl-gamma-glutamy 99.9 3.3E-25 7.1E-30 189.6 11.6 233 7-273 20-264 (340)
42 KOG4777 Aspartate-semialdehyde 99.9 2.9E-21 6.3E-26 166.6 10.4 238 8-272 5-278 (361)
43 PRK08300 acetaldehyde dehydrog 99.7 4.8E-16 1E-20 140.6 14.7 154 6-187 4-160 (302)
44 PF01118 Semialdhyde_dh: Semia 99.7 1.4E-16 3E-21 126.6 6.0 113 8-146 1-119 (121)
45 TIGR03215 ac_ald_DH_ac acetald 99.5 1.1E-13 2.3E-18 125.0 12.5 152 6-188 1-155 (285)
46 PF02774 Semialdhyde_dhC: Semi 99.3 2.1E-11 4.6E-16 103.8 9.3 105 166-273 1-132 (184)
47 TIGR01921 DAP-DH diaminopimela 99.2 2.8E-10 6E-15 104.3 11.5 209 6-271 3-220 (324)
48 smart00859 Semialdhyde_dh Semi 99.0 3.8E-09 8.1E-14 83.8 8.9 112 8-146 1-121 (122)
49 PRK13302 putative L-aspartate 98.7 5E-08 1.1E-12 88.0 8.8 92 1-122 1-93 (271)
50 PRK13303 L-aspartate dehydroge 98.6 1.1E-07 2.5E-12 85.5 7.8 88 7-124 2-89 (265)
51 PRK13301 putative L-aspartate 98.5 5E-07 1.1E-11 80.4 7.8 93 5-129 1-95 (267)
52 TIGR00036 dapB dihydrodipicoli 98.4 6.6E-07 1.4E-11 80.6 8.2 95 7-126 2-97 (266)
53 PF01408 GFO_IDH_MocA: Oxidore 98.4 4E-07 8.6E-12 71.5 5.8 93 7-129 1-94 (120)
54 COG4569 MhpF Acetaldehyde dehy 98.4 1.5E-06 3.3E-11 73.7 8.3 139 1-171 1-144 (310)
55 PF01113 DapB_N: Dihydrodipico 98.4 3.7E-07 8E-12 72.7 4.4 92 7-122 1-93 (124)
56 COG1712 Predicted dinucleotide 98.3 1.8E-06 3.9E-11 74.4 7.7 93 7-130 1-94 (255)
57 PRK11579 putative oxidoreducta 98.3 1.8E-06 3.9E-11 80.6 8.2 92 6-129 4-96 (346)
58 PRK00048 dihydrodipicolinate r 98.3 2.1E-06 4.5E-11 77.0 7.9 87 7-126 2-89 (257)
59 COG0289 DapB Dihydrodipicolina 98.3 5.2E-06 1.1E-10 73.5 9.9 98 5-126 1-99 (266)
60 PRK13304 L-aspartate dehydroge 98.2 3.4E-06 7.3E-11 76.0 7.8 89 7-126 2-91 (265)
61 PRK06270 homoserine dehydrogen 98.2 4.4E-06 9.5E-11 77.9 7.8 105 5-128 1-124 (341)
62 PRK10206 putative oxidoreducta 98.0 1E-05 2.2E-10 75.6 7.0 94 6-129 1-96 (344)
63 COG0673 MviM Predicted dehydro 98.0 1.6E-05 3.5E-10 73.6 7.5 96 5-129 2-99 (342)
64 PRK06349 homoserine dehydrogen 97.9 4.3E-05 9.4E-10 73.4 7.9 90 6-127 3-102 (426)
65 KOG2741 Dimeric dihydrodiol de 97.7 0.00012 2.5E-09 67.2 7.7 101 1-129 1-104 (351)
66 PRK08374 homoserine dehydrogen 97.7 8.6E-05 1.9E-09 69.1 6.2 106 5-127 1-120 (336)
67 PLN02819 lysine-ketoglutarate 97.6 0.0002 4.3E-09 75.2 8.4 152 6-189 569-737 (1042)
68 PF03447 NAD_binding_3: Homose 97.6 6.3E-05 1.4E-09 58.9 3.5 86 13-128 1-89 (117)
69 PLN02775 Probable dihydrodipic 97.6 0.00023 5.1E-09 64.2 7.4 96 5-125 10-109 (286)
70 PRK06392 homoserine dehydrogen 97.5 0.00036 7.8E-09 64.6 7.7 33 7-39 1-40 (326)
71 PF10727 Rossmann-like: Rossma 97.4 0.00027 5.8E-09 56.5 5.2 81 6-119 10-91 (127)
72 PRK07502 cyclohexadienyl dehyd 97.4 0.00058 1.3E-08 62.7 8.2 98 1-130 1-101 (307)
73 COG1748 LYS9 Saccharopine dehy 97.4 0.00035 7.7E-09 65.8 6.7 123 7-158 2-124 (389)
74 PRK06813 homoserine dehydrogen 97.4 0.00056 1.2E-08 63.8 7.8 35 5-39 1-44 (346)
75 COG2344 AT-rich DNA-binding pr 97.4 0.00024 5.1E-09 59.8 4.7 91 6-125 84-175 (211)
76 TIGR01761 thiaz-red thiazoliny 97.2 0.001 2.2E-08 62.0 7.1 92 6-129 3-98 (343)
77 PRK05472 redox-sensing transcr 97.2 0.00082 1.8E-08 58.4 5.9 91 7-126 85-176 (213)
78 TIGR02130 dapB_plant dihydrodi 97.1 0.0013 2.9E-08 59.1 6.6 88 7-122 1-95 (275)
79 PRK11880 pyrroline-5-carboxyla 97.1 0.0013 2.9E-08 58.8 6.6 93 5-129 1-94 (267)
80 COG0460 ThrA Homoserine dehydr 97.0 0.0028 6.1E-08 58.5 8.5 98 5-129 2-113 (333)
81 PF03807 F420_oxidored: NADP o 97.0 0.0013 2.9E-08 49.2 5.0 90 8-129 1-94 (96)
82 PF03435 Saccharop_dh: Sacchar 97.0 0.0014 3E-08 62.1 5.8 98 9-129 1-98 (386)
83 PF02629 CoA_binding: CoA bind 96.8 0.0011 2.4E-08 50.1 3.3 89 7-126 4-92 (96)
84 COG4091 Predicted homoserine d 96.8 0.0029 6.3E-08 58.2 6.3 100 6-121 17-127 (438)
85 PRK07634 pyrroline-5-carboxyla 96.8 0.0026 5.7E-08 56.1 5.7 94 7-130 5-100 (245)
86 PRK05447 1-deoxy-D-xylulose 5- 96.7 0.0055 1.2E-07 57.7 7.2 111 7-126 2-120 (385)
87 PRK07819 3-hydroxybutyryl-CoA 96.6 0.01 2.3E-07 53.9 8.7 158 1-174 1-179 (286)
88 PRK08818 prephenate dehydrogen 96.5 0.0061 1.3E-07 57.4 6.7 121 7-174 5-147 (370)
89 PRK07417 arogenate dehydrogena 96.5 0.011 2.3E-07 53.6 8.0 89 8-131 2-93 (279)
90 PRK08507 prephenate dehydrogen 96.5 0.0084 1.8E-07 54.1 7.0 89 8-131 2-93 (275)
91 PLN02256 arogenate dehydrogena 96.4 0.0087 1.9E-07 55.0 6.8 89 6-130 36-128 (304)
92 KOG4039 Serine/threonine kinas 96.4 0.013 2.9E-07 49.2 6.9 33 7-39 19-52 (238)
93 PRK11559 garR tartronate semia 96.3 0.0067 1.5E-07 55.2 5.4 33 5-39 1-33 (296)
94 COG0287 TyrA Prephenate dehydr 96.3 0.015 3.2E-07 52.7 7.4 122 6-160 3-148 (279)
95 TIGR02853 spore_dpaA dipicolin 96.2 0.0064 1.4E-07 55.4 4.8 91 7-131 152-242 (287)
96 PLN02700 homoserine dehydrogen 96.2 0.021 4.4E-07 53.9 8.1 35 5-39 2-44 (377)
97 cd01076 NAD_bind_1_Glu_DH NAD( 96.2 0.017 3.8E-07 50.7 7.2 33 6-39 31-63 (227)
98 PRK12491 pyrroline-5-carboxyla 96.1 0.017 3.7E-07 52.2 7.0 91 6-129 2-97 (272)
99 PF03446 NAD_binding_2: NAD bi 96.1 0.0041 8.8E-08 51.7 2.6 32 6-39 1-32 (163)
100 PF13460 NAD_binding_10: NADH( 96.0 0.0076 1.7E-07 50.3 4.0 29 9-38 1-30 (183)
101 COG2910 Putative NADH-flavin r 96.0 0.068 1.5E-06 45.2 9.2 30 7-37 1-31 (211)
102 CHL00194 ycf39 Ycf39; Provisio 95.9 0.029 6.4E-07 51.4 7.7 30 7-37 1-31 (317)
103 PRK06476 pyrroline-5-carboxyla 95.9 0.012 2.7E-07 52.5 4.9 32 8-39 2-34 (258)
104 PRK08306 dipicolinate synthase 95.8 0.017 3.8E-07 52.8 5.8 91 7-131 153-243 (296)
105 KOG1502 Flavonol reductase/cin 95.8 0.067 1.5E-06 49.3 9.4 36 1-36 1-37 (327)
106 COG2085 Predicted dinucleotide 95.8 0.038 8.2E-07 47.7 7.3 92 7-130 2-94 (211)
107 cd05213 NAD_bind_Glutamyl_tRNA 95.8 0.019 4.1E-07 52.9 5.7 93 7-130 179-274 (311)
108 PF01210 NAD_Gly3P_dh_N: NAD-d 95.7 0.028 6E-07 46.4 6.1 96 8-128 1-102 (157)
109 PRK08618 ornithine cyclodeamin 95.7 0.022 4.7E-07 52.8 6.1 95 7-130 128-222 (325)
110 PF05368 NmrA: NmrA-like famil 95.7 0.011 2.3E-07 51.6 3.8 95 9-128 1-102 (233)
111 cd01065 NAD_bind_Shikimate_DH 95.7 0.03 6.5E-07 45.5 6.2 32 7-39 20-51 (155)
112 PRK11199 tyrA bifunctional cho 95.6 0.023 5E-07 53.8 5.9 77 6-131 98-177 (374)
113 PRK06545 prephenate dehydrogen 95.6 0.04 8.8E-07 51.7 7.4 91 8-131 2-97 (359)
114 PF01488 Shikimate_DH: Shikima 95.6 0.017 3.7E-07 46.4 4.1 95 7-129 13-109 (135)
115 PRK08229 2-dehydropantoate 2-r 95.5 0.077 1.7E-06 49.2 9.0 31 5-36 1-31 (341)
116 PLN02696 1-deoxy-D-xylulose-5- 95.5 0.045 9.8E-07 52.6 7.2 111 7-126 58-178 (454)
117 PLN02712 arogenate dehydrogena 95.5 0.033 7.2E-07 56.6 6.7 90 6-131 369-462 (667)
118 PRK07680 late competence prote 95.4 0.03 6.5E-07 50.4 5.7 91 8-130 2-97 (273)
119 PRK09436 thrA bifunctional asp 95.4 0.057 1.2E-06 56.2 8.4 102 5-129 464-578 (819)
120 PLN02712 arogenate dehydrogena 95.4 0.032 6.9E-07 56.7 6.4 89 7-131 53-145 (667)
121 cd05211 NAD_bind_Glu_Leu_Phe_V 95.4 0.077 1.7E-06 46.3 7.9 32 7-39 24-55 (217)
122 PRK07679 pyrroline-5-carboxyla 95.3 0.052 1.1E-06 49.1 6.7 136 7-174 4-157 (279)
123 PTZ00431 pyrroline carboxylate 95.2 0.04 8.7E-07 49.3 5.9 23 7-29 4-26 (260)
124 PRK06046 alanine dehydrogenase 95.2 0.04 8.6E-07 51.1 6.0 34 6-39 129-162 (326)
125 PRK14618 NAD(P)H-dependent gly 95.2 0.046 9.9E-07 50.6 6.3 33 1-36 1-33 (328)
126 PRK08605 D-lactate dehydrogena 95.2 0.043 9.4E-07 51.0 6.1 30 7-36 147-176 (332)
127 COG3804 Uncharacterized conser 95.2 0.1 2.3E-06 46.8 8.0 35 5-39 1-35 (350)
128 PRK06928 pyrroline-5-carboxyla 95.2 0.035 7.7E-07 50.2 5.3 91 7-129 2-98 (277)
129 PLN02688 pyrroline-5-carboxyla 95.1 0.068 1.5E-06 47.7 7.1 33 7-39 1-36 (266)
130 PRK09414 glutamate dehydrogena 95.1 0.14 3.1E-06 49.4 9.5 102 7-126 233-341 (445)
131 PRK00094 gpsA NAD(P)H-dependen 95.0 0.053 1.2E-06 49.7 6.2 31 7-39 2-32 (325)
132 PF13380 CoA_binding_2: CoA bi 94.9 0.09 1.9E-06 41.2 6.3 82 8-128 2-87 (116)
133 PRK09466 metL bifunctional asp 94.9 0.085 1.8E-06 54.8 7.8 35 5-39 457-500 (810)
134 PRK14619 NAD(P)H-dependent gly 94.8 0.052 1.1E-06 49.8 5.5 26 7-33 5-30 (308)
135 PF00056 Ldh_1_N: lactate/mala 94.8 0.036 7.8E-07 44.9 4.0 33 7-39 1-34 (141)
136 PRK15461 NADH-dependent gamma- 94.7 0.067 1.4E-06 48.9 5.9 31 7-39 2-32 (296)
137 TIGR02371 ala_DH_arch alanine 94.7 0.074 1.6E-06 49.3 6.1 34 6-39 128-161 (325)
138 PRK06223 malate dehydrogenase; 94.5 0.14 3E-06 46.9 7.6 32 7-39 3-34 (307)
139 COG0345 ProC Pyrroline-5-carbo 94.5 0.094 2E-06 47.2 6.1 92 7-129 2-95 (266)
140 PRK12480 D-lactate dehydrogena 94.4 0.068 1.5E-06 49.7 5.3 29 7-36 147-175 (330)
141 TIGR00872 gnd_rel 6-phosphoglu 94.4 0.13 2.7E-06 47.1 7.0 30 8-39 2-31 (298)
142 PRK07574 formate dehydrogenase 94.4 0.064 1.4E-06 50.9 5.1 30 7-37 193-222 (385)
143 TIGR01915 npdG NADPH-dependent 94.4 0.1 2.2E-06 45.4 6.0 28 7-35 1-29 (219)
144 PRK07531 bifunctional 3-hydrox 94.4 0.13 2.8E-06 50.5 7.3 31 7-39 5-35 (495)
145 PRK13243 glyoxylate reductase; 94.2 0.086 1.9E-06 49.1 5.4 31 7-39 151-181 (333)
146 COG0373 HemA Glutamyl-tRNA red 94.1 0.19 4.1E-06 48.0 7.6 93 7-130 179-275 (414)
147 PRK12490 6-phosphogluconate de 94.0 0.12 2.5E-06 47.3 6.0 30 8-39 2-31 (299)
148 PTZ00082 L-lactate dehydrogena 94.0 0.13 2.7E-06 47.7 6.1 32 7-39 7-38 (321)
149 PRK14806 bifunctional cyclohex 93.9 0.19 4E-06 51.8 7.7 32 7-39 4-36 (735)
150 TIGR03649 ergot_EASG ergot alk 93.8 0.19 4.2E-06 45.0 7.0 29 8-37 1-30 (285)
151 PRK06249 2-dehydropantoate 2-r 93.8 0.33 7.2E-06 44.6 8.6 30 6-36 5-34 (313)
152 TIGR01505 tartro_sem_red 2-hyd 93.7 0.12 2.6E-06 46.9 5.4 30 8-39 1-30 (291)
153 PLN00203 glutamyl-tRNA reducta 93.7 0.2 4.3E-06 49.5 7.2 32 7-39 267-298 (519)
154 PRK08655 prephenate dehydrogen 93.5 0.2 4.4E-06 48.4 6.8 89 7-130 1-93 (437)
155 cd01080 NAD_bind_m-THF_DH_Cycl 93.5 0.43 9.4E-06 39.9 8.0 88 7-146 45-138 (168)
156 PF02826 2-Hacid_dh_C: D-isome 93.5 0.12 2.6E-06 43.5 4.6 30 7-37 37-66 (178)
157 TIGR01035 hemA glutamyl-tRNA r 93.5 0.14 3.1E-06 49.1 5.7 32 7-39 181-212 (417)
158 TIGR03736 PRTRC_ThiF PRTRC sys 93.5 0.29 6.2E-06 43.5 7.2 116 7-130 12-142 (244)
159 cd05293 LDH_1 A subgroup of L- 93.3 0.2 4.4E-06 46.2 6.1 33 7-39 4-36 (312)
160 cd05290 LDH_3 A subgroup of L- 93.2 0.18 3.8E-06 46.4 5.6 32 8-39 1-32 (307)
161 PRK15438 erythronate-4-phospha 93.2 0.21 4.7E-06 47.2 6.3 29 7-36 117-145 (378)
162 PRK00066 ldh L-lactate dehydro 93.1 0.68 1.5E-05 42.7 9.4 33 7-39 7-39 (315)
163 PTZ00117 malate dehydrogenase; 93.1 0.5 1.1E-05 43.7 8.4 32 7-39 6-37 (319)
164 PRK07530 3-hydroxybutyryl-CoA 93.1 0.16 3.4E-06 46.2 5.0 31 7-39 5-35 (292)
165 PF02670 DXP_reductoisom: 1-de 93.0 0.22 4.7E-06 39.8 5.1 38 9-47 1-40 (129)
166 TIGR03026 NDP-sugDHase nucleot 93.0 0.21 4.5E-06 47.8 6.0 28 8-36 2-29 (411)
167 PLN00016 RNA-binding protein; 92.8 0.3 6.6E-06 45.9 6.8 32 5-37 51-87 (378)
168 COG0240 GpsA Glycerol-3-phosph 92.8 0.19 4.2E-06 46.3 5.2 99 7-128 2-104 (329)
169 PRK00257 erythronate-4-phospha 92.8 0.23 5.1E-06 47.1 5.8 29 7-36 117-145 (381)
170 PRK15059 tartronate semialdehy 92.7 0.22 4.9E-06 45.4 5.5 26 8-34 2-27 (292)
171 PRK05479 ketol-acid reductoiso 92.7 0.27 5.7E-06 45.7 6.0 29 7-36 18-46 (330)
172 PRK08293 3-hydroxybutyryl-CoA 92.6 0.27 5.9E-06 44.5 5.9 29 7-36 4-32 (287)
173 TIGR02717 AcCoA-syn-alpha acet 92.5 0.44 9.4E-06 46.2 7.5 82 7-126 8-94 (447)
174 PRK00045 hemA glutamyl-tRNA re 92.5 0.18 4E-06 48.4 4.9 32 7-39 183-214 (423)
175 PLN02602 lactate dehydrogenase 92.5 0.22 4.8E-06 46.7 5.2 33 7-39 38-70 (350)
176 PLN02350 phosphogluconate dehy 92.4 0.3 6.5E-06 47.9 6.2 37 1-39 1-37 (493)
177 TIGR00465 ilvC ketol-acid redu 92.4 1.1 2.3E-05 41.5 9.5 30 7-37 4-33 (314)
178 PRK14982 acyl-ACP reductase; P 92.3 0.17 3.7E-06 47.1 4.2 89 7-129 156-246 (340)
179 PRK09599 6-phosphogluconate de 92.2 0.36 7.7E-06 44.1 6.2 30 8-39 2-31 (301)
180 PTZ00325 malate dehydrogenase; 92.1 1.1 2.3E-05 41.6 9.2 34 6-39 8-42 (321)
181 PRK12921 2-dehydropantoate 2-r 92.1 0.56 1.2E-05 42.6 7.4 29 7-36 1-29 (305)
182 cd05294 LDH-like_MDH_nadp A la 92.1 0.31 6.8E-06 44.8 5.7 30 7-36 1-32 (309)
183 cd01075 NAD_bind_Leu_Phe_Val_D 92.0 0.66 1.4E-05 39.9 7.3 31 7-39 29-59 (200)
184 cd05292 LDH_2 A subgroup of L- 91.9 0.38 8.3E-06 44.2 6.0 33 7-39 1-33 (308)
185 PTZ00345 glycerol-3-phosphate 91.9 0.41 8.9E-06 45.1 6.3 23 6-28 11-33 (365)
186 TIGR02992 ectoine_eutC ectoine 91.9 0.33 7.2E-06 45.0 5.6 33 7-39 130-162 (326)
187 PRK09260 3-hydroxybutyryl-CoA 91.8 0.42 9.2E-06 43.3 6.2 29 7-36 2-30 (288)
188 PRK06522 2-dehydropantoate 2-r 91.8 1 2.3E-05 40.7 8.8 30 7-37 1-30 (304)
189 cd05291 HicDH_like L-2-hydroxy 91.6 0.44 9.5E-06 43.7 6.1 29 8-36 2-31 (306)
190 PLN02657 3,8-divinyl protochlo 91.5 0.69 1.5E-05 43.9 7.5 30 7-37 61-91 (390)
191 COG5322 Predicted dehydrogenas 91.4 1.1 2.3E-05 40.4 7.9 25 7-31 168-193 (351)
192 cd00401 AdoHcyase S-adenosyl-L 91.3 0.42 9.2E-06 45.8 5.8 31 7-39 203-233 (413)
193 COG0039 Mdh Malate/lactate deh 91.3 0.92 2E-05 41.8 7.7 30 7-36 1-31 (313)
194 KOG2711 Glycerol-3-phosphate d 91.1 0.81 1.8E-05 42.4 7.1 105 6-128 21-138 (372)
195 PRK01438 murD UDP-N-acetylmura 91.0 1.6 3.4E-05 42.5 9.7 90 7-126 17-106 (480)
196 PRK13403 ketol-acid reductoiso 91.0 0.63 1.4E-05 43.1 6.3 32 7-39 17-48 (335)
197 PRK05678 succinyl-CoA syntheta 90.9 0.78 1.7E-05 41.9 6.9 85 6-126 8-95 (291)
198 PRK14030 glutamate dehydrogena 90.9 1.5 3.3E-05 42.3 9.1 104 7-126 229-341 (445)
199 PRK05476 S-adenosyl-L-homocyst 90.8 0.57 1.2E-05 45.0 6.2 29 7-36 213-241 (425)
200 TIGR01763 MalateDH_bact malate 90.7 0.7 1.5E-05 42.5 6.5 32 7-39 2-33 (305)
201 COG1063 Tdh Threonine dehydrog 90.4 1.3 2.9E-05 41.3 8.2 31 8-39 171-201 (350)
202 PRK12439 NAD(P)H-dependent gly 90.4 0.43 9.3E-06 44.5 4.9 24 7-30 8-31 (341)
203 TIGR02279 PaaC-3OHAcCoADH 3-hy 90.4 0.34 7.4E-06 47.7 4.3 29 7-36 6-34 (503)
204 PRK05442 malate dehydrogenase; 90.4 0.67 1.4E-05 43.0 6.0 27 1-29 1-28 (326)
205 PF01073 3Beta_HSD: 3-beta hyd 90.3 1.4 3.1E-05 39.8 8.0 29 11-39 2-31 (280)
206 cd01338 MDH_choloroplast_like 90.2 0.72 1.6E-05 42.7 6.2 23 7-29 3-26 (322)
207 PLN02477 glutamate dehydrogena 90.2 3.3 7.1E-05 39.7 10.6 32 7-39 207-238 (410)
208 PRK06487 glycerate dehydrogena 90.0 0.4 8.6E-06 44.3 4.3 29 7-36 149-177 (317)
209 PRK08268 3-hydroxy-acyl-CoA de 90.0 0.48 1E-05 46.7 5.1 31 7-39 8-38 (507)
210 PRK14031 glutamate dehydrogena 90.0 2.1 4.5E-05 41.4 9.2 32 7-39 229-260 (444)
211 PRK08410 2-hydroxyacid dehydro 90.0 0.4 8.7E-06 44.1 4.2 29 7-36 146-174 (311)
212 PTZ00075 Adenosylhomocysteinas 89.8 0.79 1.7E-05 44.6 6.2 29 7-36 255-283 (476)
213 TIGR00518 alaDH alanine dehydr 89.7 0.66 1.4E-05 43.8 5.6 31 7-39 168-198 (370)
214 PF03721 UDPG_MGDP_dh_N: UDP-g 89.6 0.42 9.2E-06 40.6 3.8 29 7-36 1-29 (185)
215 PTZ00079 NADP-specific glutama 89.6 2.6 5.5E-05 40.9 9.4 103 7-126 238-350 (454)
216 PLN02214 cinnamoyl-CoA reducta 89.5 2 4.2E-05 39.9 8.6 31 6-37 10-41 (342)
217 TIGR00243 Dxr 1-deoxy-D-xylulo 89.5 0.62 1.3E-05 44.0 5.1 107 7-121 2-118 (389)
218 cd01483 E1_enzyme_family Super 89.5 0.66 1.4E-05 37.3 4.7 31 8-39 1-31 (143)
219 cd00300 LDH_like L-lactate deh 89.4 1.5 3.3E-05 40.1 7.6 31 9-39 1-31 (300)
220 TIGR01019 sucCoAalpha succinyl 89.4 1.3 2.8E-05 40.3 7.0 85 7-126 7-93 (286)
221 PLN00106 malate dehydrogenase 89.3 2.1 4.5E-05 39.7 8.4 33 7-39 19-52 (323)
222 PRK06932 glycerate dehydrogena 89.3 0.49 1.1E-05 43.6 4.3 29 7-36 148-176 (314)
223 PRK06719 precorrin-2 dehydroge 89.3 3.1 6.8E-05 34.2 8.7 29 7-36 14-42 (157)
224 PRK06199 ornithine cyclodeamin 89.2 0.87 1.9E-05 43.2 6.0 34 6-39 155-189 (379)
225 PRK06718 precorrin-2 dehydroge 89.2 3.8 8.2E-05 35.2 9.4 30 7-37 11-40 (202)
226 PTZ00142 6-phosphogluconate de 89.1 0.92 2E-05 44.3 6.2 31 7-39 2-32 (470)
227 PRK15409 bifunctional glyoxyla 89.0 0.53 1.1E-05 43.6 4.2 29 7-36 146-175 (323)
228 PLN02858 fructose-bisphosphate 88.7 0.81 1.8E-05 50.4 6.0 37 1-39 319-355 (1378)
229 PRK08291 ectoine utilization p 88.7 0.72 1.6E-05 42.8 5.0 33 7-39 133-165 (330)
230 PRK14106 murD UDP-N-acetylmura 88.6 2.7 5.7E-05 40.5 9.1 92 7-127 6-97 (450)
231 COG0111 SerA Phosphoglycerate 88.5 0.61 1.3E-05 43.2 4.3 29 7-36 143-171 (324)
232 PRK06407 ornithine cyclodeamin 88.4 0.69 1.5E-05 42.4 4.5 33 7-39 118-150 (301)
233 PLN02928 oxidoreductase family 88.3 0.62 1.3E-05 43.6 4.3 30 7-37 160-189 (347)
234 PLN02166 dTDP-glucose 4,6-dehy 88.1 2.9 6.2E-05 40.4 8.9 30 7-37 121-151 (436)
235 KOG2380 Prephenate dehydrogena 88.1 1.4 2.9E-05 41.0 6.1 24 7-30 53-76 (480)
236 PRK07340 ornithine cyclodeamin 87.9 0.57 1.2E-05 43.0 3.7 33 7-39 126-158 (304)
237 TIGR00936 ahcY adenosylhomocys 87.8 1.2 2.7E-05 42.5 6.0 29 7-36 196-224 (406)
238 COG0771 MurD UDP-N-acetylmuram 87.8 3.5 7.6E-05 40.0 9.1 89 6-122 7-95 (448)
239 cd01487 E1_ThiF_like E1_ThiF_l 87.8 0.76 1.7E-05 38.6 4.1 22 8-29 1-22 (174)
240 PRK06436 glycerate dehydrogena 87.7 0.73 1.6E-05 42.3 4.3 30 7-37 123-152 (303)
241 PRK07236 hypothetical protein; 87.6 0.8 1.7E-05 43.1 4.6 34 1-35 1-34 (386)
242 cd00704 MDH Malate dehydrogena 87.5 1.4 3.1E-05 40.8 6.1 25 7-31 1-26 (323)
243 PLN02206 UDP-glucuronate decar 87.5 3.3 7.2E-05 40.0 8.9 30 7-37 120-150 (442)
244 PRK00258 aroE shikimate 5-dehy 87.3 1.8 4E-05 39.0 6.6 32 7-39 124-155 (278)
245 PRK15469 ghrA bifunctional gly 87.2 0.88 1.9E-05 42.0 4.5 30 7-37 137-166 (312)
246 PRK14194 bifunctional 5,10-met 87.2 2.1 4.6E-05 39.2 6.9 71 7-129 160-231 (301)
247 PLN02545 3-hydroxybutyryl-CoA 87.1 1 2.2E-05 40.9 4.9 35 1-39 1-35 (295)
248 PRK00676 hemA glutamyl-tRNA re 87.1 2.4 5.2E-05 39.5 7.3 32 7-39 175-206 (338)
249 TIGR01759 MalateDH-SF1 malate 87.1 1.5 3.2E-05 40.7 5.9 24 7-30 4-28 (323)
250 TIGR03376 glycerol3P_DH glycer 87.0 1.7 3.7E-05 40.6 6.4 21 8-28 1-21 (342)
251 PLN02494 adenosylhomocysteinas 86.9 1.6 3.5E-05 42.4 6.2 29 7-36 255-283 (477)
252 PF00670 AdoHcyase_NAD: S-aden 86.7 2.1 4.7E-05 35.5 6.1 87 7-131 24-112 (162)
253 TIGR00873 gnd 6-phosphoglucona 86.6 1.2 2.7E-05 43.4 5.3 30 8-39 1-30 (467)
254 COG1052 LdhA Lactate dehydroge 86.3 0.92 2E-05 42.1 4.2 29 7-36 147-175 (324)
255 PRK06130 3-hydroxybutyryl-CoA 86.2 1.2 2.7E-05 40.6 4.9 33 1-36 1-33 (311)
256 PRK03369 murD UDP-N-acetylmura 86.1 4.5 9.7E-05 39.6 9.1 83 7-122 13-96 (488)
257 PF00070 Pyr_redox: Pyridine n 86.0 1.6 3.4E-05 31.3 4.5 29 8-37 1-29 (80)
258 cd01486 Apg7 Apg7 is an E1-lik 86.0 0.77 1.7E-05 42.1 3.4 30 8-38 1-30 (307)
259 COG1087 GalE UDP-glucose 4-epi 86.0 1.7 3.6E-05 39.8 5.4 142 8-179 2-166 (329)
260 COG0743 Dxr 1-deoxy-D-xylulose 86.0 1.3 2.8E-05 41.5 4.8 40 7-47 2-43 (385)
261 PRK11908 NAD-dependent epimera 85.8 1.1 2.5E-05 41.3 4.6 31 7-37 2-33 (347)
262 PLN02306 hydroxypyruvate reduc 85.8 1.1 2.4E-05 42.6 4.5 31 7-39 166-197 (386)
263 PRK11790 D-3-phosphoglycerate 85.7 1 2.2E-05 43.1 4.3 30 7-37 152-181 (409)
264 PLN03139 formate dehydrogenase 85.7 1.1 2.3E-05 42.7 4.3 31 7-39 200-230 (386)
265 TIGR01470 cysG_Nterm siroheme 85.6 4.6 9.9E-05 34.8 7.9 85 7-121 10-95 (205)
266 TIGR01202 bchC 2-desacetyl-2-h 85.6 4.7 0.0001 36.6 8.5 31 8-39 147-177 (308)
267 COG3268 Uncharacterized conser 85.5 1.1 2.3E-05 41.6 4.0 95 1-122 1-99 (382)
268 PRK06823 ornithine cyclodeamin 85.5 2.7 5.7E-05 38.9 6.7 33 7-39 129-161 (315)
269 PF02737 3HCDH_N: 3-hydroxyacy 85.0 1.4 3.1E-05 37.1 4.4 28 8-36 1-28 (180)
270 cd05313 NAD_bind_2_Glu_DH NAD( 85.0 1.4 3.1E-05 39.3 4.6 32 7-39 39-70 (254)
271 PLN02353 probable UDP-glucose 84.8 1.3 2.8E-05 43.3 4.5 31 7-37 2-33 (473)
272 PLN00112 malate dehydrogenase 84.7 2.1 4.6E-05 41.4 5.8 22 7-28 101-123 (444)
273 PRK08644 thiamine biosynthesis 84.6 1 2.2E-05 39.1 3.3 23 7-29 29-51 (212)
274 COG0334 GdhA Glutamate dehydro 84.4 6.2 0.00013 37.6 8.6 32 7-39 208-239 (411)
275 KOG0024 Sorbitol dehydrogenase 84.3 3 6.5E-05 38.5 6.3 34 95-128 241-274 (354)
276 cd01078 NAD_bind_H4MPT_DH NADP 84.1 1.5 3.2E-05 37.2 4.1 29 7-36 29-58 (194)
277 PRK11154 fadJ multifunctional 84.1 2.1 4.6E-05 44.0 5.9 30 7-36 310-339 (708)
278 PRK13940 glutamyl-tRNA reducta 83.9 1.2 2.6E-05 42.7 3.9 32 7-39 182-213 (414)
279 PRK00683 murD UDP-N-acetylmura 83.7 4.8 0.0001 38.5 7.9 82 7-122 4-85 (418)
280 COG1893 ApbA Ketopantoate redu 83.5 4.1 9E-05 37.4 7.1 23 7-29 1-23 (307)
281 PRK12549 shikimate 5-dehydroge 83.4 2.7 5.8E-05 38.2 5.8 32 7-39 128-159 (284)
282 PLN03209 translocon at the inn 83.3 3.2 6.9E-05 41.5 6.6 30 7-37 81-111 (576)
283 PRK09880 L-idonate 5-dehydroge 83.2 6.4 0.00014 36.3 8.3 30 7-36 171-200 (343)
284 PRK06141 ornithine cyclodeamin 82.8 2 4.4E-05 39.5 4.8 32 7-39 126-158 (314)
285 COG0569 TrkA K+ transport syst 82.8 1.6 3.6E-05 38.1 4.0 101 7-131 1-103 (225)
286 PRK11064 wecC UDP-N-acetyl-D-m 82.7 1.9 4.1E-05 41.4 4.6 30 7-37 4-33 (415)
287 TIGR02356 adenyl_thiF thiazole 82.7 2.6 5.6E-05 36.2 5.1 30 7-36 22-51 (202)
288 PF02423 OCD_Mu_crystall: Orni 82.6 1.4 3.1E-05 40.5 3.7 94 7-130 129-225 (313)
289 PRK14175 bifunctional 5,10-met 82.5 5.7 0.00012 36.2 7.4 73 7-131 159-232 (286)
290 PRK12825 fabG 3-ketoacyl-(acyl 82.3 2.5 5.5E-05 36.3 5.0 35 1-36 1-36 (249)
291 PRK05690 molybdopterin biosynt 82.0 1.8 4E-05 38.4 4.0 23 7-29 33-55 (245)
292 PRK05808 3-hydroxybutyryl-CoA 82.0 2.1 4.6E-05 38.5 4.5 29 7-36 4-32 (282)
293 PRK14188 bifunctional 5,10-met 82.0 4.8 0.0001 36.8 6.8 72 7-130 159-231 (296)
294 PRK01710 murD UDP-N-acetylmura 82.0 8.3 0.00018 37.3 8.9 91 7-127 15-106 (458)
295 TIGR01757 Malate-DH_plant mala 81.9 2.9 6.3E-05 39.7 5.5 25 7-31 45-70 (387)
296 TIGR01777 yfcH conserved hypot 81.8 12 0.00025 33.2 9.3 28 9-37 1-29 (292)
297 cd01339 LDH-like_MDH L-lactate 81.7 2.4 5.3E-05 38.6 4.8 30 9-39 1-30 (300)
298 PLN02662 cinnamyl-alcohol dehy 81.7 3.6 7.8E-05 37.3 6.0 30 7-37 5-35 (322)
299 PRK09424 pntA NAD(P) transhydr 81.5 11 0.00024 37.2 9.5 31 7-39 166-196 (509)
300 KOG1399 Flavin-containing mono 81.2 1.7 3.8E-05 42.1 3.8 27 2-28 2-28 (448)
301 PLN02586 probable cinnamyl alc 81.2 6.3 0.00014 36.7 7.6 29 8-37 186-214 (360)
302 PLN02858 fructose-bisphosphate 81.0 3.3 7.2E-05 45.8 6.3 31 7-39 5-35 (1378)
303 PRK11730 fadB multifunctional 80.9 2.8 6.2E-05 43.1 5.5 29 7-36 314-342 (715)
304 PLN02986 cinnamyl-alcohol dehy 80.8 5.5 0.00012 36.2 6.9 31 7-38 6-37 (322)
305 TIGR00507 aroE shikimate 5-deh 80.7 4.8 0.0001 36.1 6.3 29 7-36 118-146 (270)
306 PLN02427 UDP-apiose/xylose syn 80.6 2.4 5.3E-05 39.8 4.6 31 7-37 15-46 (386)
307 TIGR02441 fa_ox_alpha_mit fatt 80.5 2.6 5.6E-05 43.6 5.0 29 7-36 336-364 (737)
308 TIGR01327 PGDH D-3-phosphoglyc 80.5 2.2 4.7E-05 42.3 4.3 29 7-36 139-167 (525)
309 cd08230 glucose_DH Glucose deh 80.5 10 0.00022 35.0 8.7 30 7-37 174-203 (355)
310 PRK07589 ornithine cyclodeamin 80.4 5.1 0.00011 37.5 6.5 33 7-39 130-162 (346)
311 cd00757 ThiF_MoeB_HesA_family 80.1 1.6 3.5E-05 38.1 3.0 31 7-38 22-52 (228)
312 COG1064 AdhP Zn-dependent alco 80.0 10 0.00022 35.4 8.2 91 7-126 168-258 (339)
313 COG4529 Uncharacterized protei 80.0 2.7 5.7E-05 40.8 4.5 33 7-39 2-35 (474)
314 TIGR02354 thiF_fam2 thiamine b 79.8 1.8 3.8E-05 37.3 3.1 32 7-39 22-53 (200)
315 TIGR02437 FadB fatty oxidation 79.7 4.5 9.7E-05 41.7 6.4 29 7-36 314-342 (714)
316 PRK13581 D-3-phosphoglycerate 79.7 2.4 5.1E-05 42.1 4.3 30 7-37 141-170 (526)
317 PRK06129 3-hydroxyacyl-CoA deh 79.6 2.6 5.6E-05 38.6 4.3 31 7-39 3-33 (308)
318 PRK05865 hypothetical protein; 79.6 7.9 0.00017 40.7 8.2 30 7-37 1-31 (854)
319 TIGR00561 pntA NAD(P) transhyd 79.3 1.6 3.5E-05 43.0 2.9 31 7-39 165-195 (511)
320 PRK06444 prephenate dehydrogen 79.3 2.7 5.8E-05 36.1 4.0 22 7-28 1-23 (197)
321 KOG2742 Predicted oxidoreducta 79.0 1.2 2.6E-05 41.2 1.8 92 9-130 5-96 (367)
322 PRK15057 UDP-glucose 6-dehydro 78.9 2.5 5.5E-05 40.2 4.1 28 8-37 2-29 (388)
323 COG1062 AdhC Zn-dependent alco 78.9 5.4 0.00012 37.2 6.0 96 8-126 188-284 (366)
324 PRK05653 fabG 3-ketoacyl-(acyl 78.8 3.6 7.8E-05 35.3 4.8 31 6-37 5-36 (246)
325 PRK06153 hypothetical protein; 78.7 2.4 5.1E-05 40.2 3.7 30 7-36 177-206 (393)
326 cd01484 E1-2_like Ubiquitin ac 78.5 3.3 7.2E-05 36.5 4.5 22 8-29 1-22 (234)
327 PLN02695 GDP-D-mannose-3',5'-e 78.3 3.5 7.7E-05 38.7 4.9 30 7-37 22-52 (370)
328 COG1252 Ndh NADH dehydrogenase 78.1 3.2 6.9E-05 39.7 4.5 35 5-39 2-37 (405)
329 PRK04965 NADH:flavorubredoxin 78.1 2.8 6E-05 39.3 4.1 34 5-38 1-35 (377)
330 PRK06035 3-hydroxyacyl-CoA deh 77.9 3.4 7.4E-05 37.4 4.5 31 7-39 4-34 (291)
331 TIGR03855 NAD_NadX aspartate d 77.8 2.5 5.5E-05 37.2 3.5 32 95-126 36-67 (229)
332 KOG0069 Glyoxylate/hydroxypyru 77.8 1.8 4E-05 40.2 2.7 22 7-28 163-184 (336)
333 cd08237 ribitol-5-phosphate_DH 77.4 8.1 0.00018 35.6 7.0 29 8-36 166-195 (341)
334 TIGR01771 L-LDH-NAD L-lactate 77.4 3.4 7.4E-05 37.8 4.4 29 11-39 1-29 (299)
335 cd01337 MDH_glyoxysomal_mitoch 77.2 3.7 8E-05 37.8 4.5 33 7-39 1-34 (310)
336 cd00650 LDH_MDH_like NAD-depen 77.1 6.9 0.00015 34.9 6.2 31 9-39 1-34 (263)
337 PRK07688 thiamine/molybdopteri 76.8 4.9 0.00011 37.5 5.3 30 7-36 25-54 (339)
338 PRK07326 short chain dehydroge 76.6 4.4 9.5E-05 34.8 4.7 31 6-37 6-37 (237)
339 cd08281 liver_ADH_like1 Zinc-d 76.5 9.6 0.00021 35.5 7.3 28 8-36 194-222 (371)
340 COG2084 MmsB 3-hydroxyisobutyr 76.5 5.9 0.00013 36.1 5.5 23 7-29 1-23 (286)
341 PRK08219 short chain dehydroge 76.5 3.6 7.8E-05 35.0 4.1 30 6-37 3-33 (227)
342 TIGR01087 murD UDP-N-acetylmur 75.9 17 0.00037 34.8 8.9 85 8-121 1-87 (433)
343 PRK12475 thiamine/molybdopteri 75.8 4.3 9.3E-05 37.9 4.6 32 7-39 25-56 (338)
344 PRK15182 Vi polysaccharide bio 75.7 4.1 8.9E-05 39.3 4.6 29 7-37 7-35 (425)
345 COG2423 Predicted ornithine cy 75.6 7 0.00015 36.4 5.9 33 7-39 131-163 (330)
346 cd01336 MDH_cytoplasmic_cytoso 75.5 4.4 9.6E-05 37.5 4.6 30 7-36 3-39 (325)
347 PRK08773 2-octaprenyl-3-methyl 75.4 4.4 9.5E-05 38.1 4.7 35 1-36 1-35 (392)
348 TIGR01758 MDH_euk_cyt malate d 75.4 5.5 0.00012 36.9 5.2 22 8-29 1-23 (324)
349 PF04321 RmlD_sub_bind: RmlD s 75.3 4.5 9.7E-05 36.6 4.5 30 7-37 1-31 (286)
350 TIGR01692 HIBADH 3-hydroxyisob 75.2 4.1 9E-05 36.8 4.3 27 11-39 1-27 (288)
351 PRK00141 murD UDP-N-acetylmura 75.1 19 0.00041 35.1 9.1 83 7-121 16-99 (473)
352 COG0169 AroE Shikimate 5-dehyd 75.0 9.3 0.0002 34.8 6.4 32 7-38 127-158 (283)
353 PRK07877 hypothetical protein; 74.9 3 6.5E-05 42.9 3.6 35 95-131 195-230 (722)
354 PLN00125 Succinyl-CoA ligase [ 74.8 11 0.00024 34.5 6.9 86 7-126 13-99 (300)
355 PRK06847 hypothetical protein; 74.6 4.4 9.6E-05 37.6 4.4 31 1-34 1-31 (375)
356 PRK14179 bifunctional 5,10-met 74.6 9.5 0.00021 34.7 6.3 23 7-29 159-182 (284)
357 PRK14192 bifunctional 5,10-met 74.6 7.7 0.00017 35.3 5.8 23 7-29 160-183 (283)
358 PF02254 TrkA_N: TrkA-N domain 74.4 5.4 0.00012 30.3 4.2 29 9-38 1-29 (116)
359 PRK08223 hypothetical protein; 74.0 5.7 0.00012 36.2 4.8 23 7-29 28-50 (287)
360 PRK05708 2-dehydropantoate 2-r 73.9 4.7 0.0001 36.9 4.3 30 6-36 2-31 (305)
361 PRK00421 murC UDP-N-acetylmura 73.7 20 0.00043 34.7 8.8 87 7-127 8-95 (461)
362 PRK15181 Vi polysaccharide bio 73.6 4.7 0.0001 37.4 4.3 30 7-37 16-46 (348)
363 TIGR03366 HpnZ_proposed putati 73.6 8.4 0.00018 34.4 5.9 28 8-36 123-151 (280)
364 TIGR03451 mycoS_dep_FDH mycoth 73.4 23 0.0005 32.8 8.9 29 7-36 178-207 (358)
365 PRK04690 murD UDP-N-acetylmura 73.3 23 0.0005 34.5 9.2 90 7-127 9-98 (468)
366 PLN02778 3,5-epimerase/4-reduc 73.3 3.9 8.5E-05 37.1 3.6 29 5-34 8-37 (298)
367 TIGR03219 salicylate_mono sali 73.2 4.5 9.7E-05 38.4 4.2 27 7-33 1-27 (414)
368 COG1086 Predicted nucleoside-d 72.8 4.9 0.00011 39.8 4.3 34 6-39 116-149 (588)
369 PLN02240 UDP-glucose 4-epimera 72.7 6 0.00013 36.3 4.8 35 1-37 1-36 (352)
370 PRK05086 malate dehydrogenase; 72.6 5.8 0.00013 36.5 4.6 33 7-39 1-35 (312)
371 PRK12827 short chain dehydroge 72.4 6.4 0.00014 33.9 4.7 36 1-37 1-37 (249)
372 COG1086 Predicted nucleoside-d 72.4 10 0.00023 37.6 6.4 116 7-141 251-389 (588)
373 TIGR01809 Shik-DH-AROM shikima 72.3 8.5 0.00018 34.8 5.5 32 7-39 126-157 (282)
374 PRK06185 hypothetical protein; 72.3 5 0.00011 37.8 4.3 35 1-36 1-35 (407)
375 cd05212 NAD_bind_m-THF_DH_Cycl 72.0 19 0.0004 29.1 6.9 30 95-128 70-99 (140)
376 KOG1494 NAD-dependent malate d 71.8 4.6 0.0001 36.6 3.5 34 6-39 28-62 (345)
377 PRK08163 salicylate hydroxylas 71.6 5.9 0.00013 37.2 4.5 30 1-33 1-30 (396)
378 KOG0455 Homoserine dehydrogena 71.5 4.9 0.00011 35.8 3.6 102 6-121 3-113 (364)
379 PLN02514 cinnamyl-alcohol dehy 71.3 15 0.00033 34.1 7.2 31 7-38 182-212 (357)
380 PRK05600 thiamine biosynthesis 71.2 8.4 0.00018 36.4 5.4 30 7-36 42-71 (370)
381 TIGR02355 moeB molybdopterin s 70.8 5.4 0.00012 35.3 3.8 32 7-39 25-56 (240)
382 PRK12826 3-ketoacyl-(acyl-carr 70.8 7.3 0.00016 33.6 4.7 36 1-37 1-37 (251)
383 PLN00141 Tic62-NAD(P)-related 70.5 6.8 0.00015 34.3 4.5 30 7-37 18-48 (251)
384 cd01492 Aos1_SUMO Ubiquitin ac 70.5 21 0.00046 30.4 7.3 32 7-39 22-53 (197)
385 PF00899 ThiF: ThiF family; I 70.4 9.8 0.00021 30.1 4.9 32 7-39 3-34 (135)
386 PRK09310 aroDE bifunctional 3- 70.2 10 0.00022 37.1 5.9 29 7-36 333-361 (477)
387 PRK05597 molybdopterin biosynt 70.1 8.7 0.00019 36.0 5.3 31 7-38 29-59 (355)
388 PRK08132 FAD-dependent oxidore 70.1 5.8 0.00013 39.3 4.3 34 2-36 19-52 (547)
389 KOG2733 Uncharacterized membra 70.0 4.4 9.5E-05 38.0 3.1 107 7-128 6-117 (423)
390 PRK15116 sulfur acceptor prote 70.0 8.9 0.00019 34.6 5.1 23 7-29 31-53 (268)
391 cd00755 YgdL_like Family of ac 70.0 10 0.00022 33.4 5.3 30 7-36 12-41 (231)
392 PRK10124 putative UDP-glucose 69.8 12 0.00027 36.4 6.4 33 7-39 144-178 (463)
393 PRK15076 alpha-galactosidase; 69.6 3.9 8.4E-05 39.5 2.8 20 7-26 2-23 (431)
394 PRK09987 dTDP-4-dehydrorhamnos 69.5 5.8 0.00013 35.9 3.9 27 8-36 2-29 (299)
395 PRK05335 tRNA (uracil-5-)-meth 69.5 6 0.00013 38.2 4.0 24 6-29 2-25 (436)
396 COG0677 WecC UDP-N-acetyl-D-ma 69.5 4.7 0.0001 38.3 3.2 31 5-36 8-38 (436)
397 PRK03806 murD UDP-N-acetylmura 69.3 40 0.00087 32.3 9.8 31 7-39 7-37 (438)
398 PRK07066 3-hydroxybutyryl-CoA 69.1 7.1 0.00015 36.2 4.4 31 7-39 8-38 (321)
399 PLN02178 cinnamyl-alcohol dehy 69.0 16 0.00034 34.4 6.8 30 7-37 180-209 (375)
400 PF00208 ELFV_dehydrog: Glutam 68.8 9.1 0.0002 34.0 4.8 32 7-39 33-64 (244)
401 KOG3923 D-aspartate oxidase [A 68.8 5.9 0.00013 36.3 3.6 34 6-39 3-42 (342)
402 PRK08125 bifunctional UDP-gluc 68.6 7 0.00015 39.8 4.6 31 7-37 316-347 (660)
403 PF02882 THF_DHG_CYH_C: Tetrah 68.6 45 0.00099 27.6 8.6 73 95-171 78-155 (160)
404 TIGR01181 dTDP_gluc_dehyt dTDP 68.5 6 0.00013 35.4 3.7 30 8-37 1-32 (317)
405 PRK04308 murD UDP-N-acetylmura 68.2 34 0.00074 32.8 9.1 87 7-121 6-92 (445)
406 PLN02740 Alcohol dehydrogenase 68.0 22 0.00048 33.3 7.6 28 8-36 201-229 (381)
407 TIGR01772 MDH_euk_gproteo mala 68.0 7.3 0.00016 35.9 4.2 32 8-39 1-33 (312)
408 PRK13512 coenzyme A disulfide 67.8 7.2 0.00016 37.5 4.3 32 7-38 2-34 (438)
409 PF10100 DUF2338: Uncharacteri 67.4 12 0.00027 35.6 5.5 31 7-37 2-32 (429)
410 cd05191 NAD_bind_amino_acid_DH 67.4 11 0.00024 27.3 4.3 32 7-39 24-55 (86)
411 PF00743 FMO-like: Flavin-bind 66.4 8.1 0.00018 38.4 4.4 29 7-36 2-30 (531)
412 COG0644 FixC Dehydrogenases (f 66.3 8.8 0.00019 36.3 4.5 32 5-37 2-33 (396)
413 TIGR03450 mycothiol_INO1 inosi 66.2 43 0.00094 31.3 8.7 31 92-122 119-152 (351)
414 KOG0068 D-3-phosphoglycerate d 66.1 4.6 0.0001 37.6 2.4 28 7-35 147-174 (406)
415 KOG1430 C-3 sterol dehydrogena 66.1 11 0.00023 35.6 4.9 33 7-39 5-38 (361)
416 PRK13394 3-hydroxybutyrate deh 66.1 11 0.00025 32.7 4.9 29 7-36 8-37 (262)
417 PRK09496 trkA potassium transp 66.0 7.7 0.00017 37.2 4.1 30 7-37 1-30 (453)
418 PRK04663 murD UDP-N-acetylmura 66.0 46 0.001 32.0 9.5 85 7-122 8-94 (438)
419 COG0654 UbiH 2-polyprenyl-6-me 65.8 7.7 0.00017 36.5 4.0 29 7-36 3-31 (387)
420 TIGR03025 EPS_sugtrans exopoly 65.6 16 0.00034 35.3 6.2 33 7-39 126-160 (445)
421 PRK11445 putative oxidoreducta 65.6 7.8 0.00017 36.0 4.0 29 7-37 2-30 (351)
422 PRK02705 murD UDP-N-acetylmura 65.5 19 0.00042 34.7 6.8 30 8-39 2-31 (459)
423 TIGR03466 HpnA hopanoid-associ 65.4 8.4 0.00018 34.7 4.1 29 8-37 2-31 (328)
424 PRK10309 galactitol-1-phosphat 65.1 33 0.00071 31.4 8.0 31 7-38 162-192 (347)
425 PRK12409 D-amino acid dehydrog 64.9 8.9 0.00019 36.2 4.3 29 7-36 2-30 (410)
426 PRK07454 short chain dehydroge 64.9 13 0.00028 32.0 5.0 36 1-37 1-37 (241)
427 cd08298 CAD2 Cinnamyl alcohol 64.8 37 0.00081 30.6 8.3 81 8-121 170-250 (329)
428 PRK02472 murD UDP-N-acetylmura 64.7 50 0.0011 31.6 9.5 90 7-126 6-96 (447)
429 PF07992 Pyr_redox_2: Pyridine 64.6 9.8 0.00021 31.6 4.1 28 8-36 1-28 (201)
430 PRK08762 molybdopterin biosynt 64.4 12 0.00026 35.3 5.0 30 7-36 136-165 (376)
431 COG0665 DadA Glycine/D-amino a 64.4 11 0.00024 35.0 4.7 32 5-37 3-34 (387)
432 COG0702 Predicted nucleoside-d 64.3 9.5 0.00021 33.3 4.1 29 8-37 2-31 (275)
433 PRK06500 short chain dehydroge 64.3 12 0.00026 32.2 4.8 35 1-36 1-36 (249)
434 PF01262 AlaDh_PNT_C: Alanine 64.3 12 0.00026 30.9 4.4 30 7-37 21-50 (168)
435 PLN00198 anthocyanidin reducta 64.1 11 0.00024 34.5 4.6 31 6-37 9-40 (338)
436 PF02558 ApbA: Ketopantoate re 64.0 13 0.00027 29.8 4.4 29 9-38 1-29 (151)
437 TIGR03023 WcaJ_sugtrans Undeca 63.7 16 0.00035 35.2 5.9 33 7-39 129-163 (451)
438 cd08239 THR_DH_like L-threonin 63.7 25 0.00054 32.0 6.9 30 7-37 165-195 (339)
439 PLN02572 UDP-sulfoquinovose sy 63.7 10 0.00023 36.6 4.5 30 6-36 47-77 (442)
440 PLN02172 flavin-containing mon 63.7 9.9 0.00022 37.0 4.4 30 6-36 10-39 (461)
441 PLN02260 probable rhamnose bio 63.5 11 0.00023 38.5 4.8 32 6-37 6-39 (668)
442 PRK12548 shikimate 5-dehydroge 63.3 24 0.00052 32.0 6.6 32 7-39 127-158 (289)
443 COG1023 Gnd Predicted 6-phosph 63.2 8 0.00017 34.4 3.2 29 7-36 1-29 (300)
444 PRK14189 bifunctional 5,10-met 63.1 28 0.00062 31.7 6.9 32 95-130 200-231 (285)
445 PRK11728 hydroxyglutarate oxid 63.1 10 0.00023 35.6 4.4 32 5-36 1-33 (393)
446 PRK10675 UDP-galactose-4-epime 63.0 10 0.00022 34.6 4.2 30 7-37 1-31 (338)
447 PRK12742 oxidoreductase; Provi 63.0 13 0.00029 31.7 4.8 35 1-36 1-36 (237)
448 PLN02989 cinnamyl-alcohol dehy 62.8 14 0.0003 33.6 5.0 34 1-36 1-35 (325)
449 PRK07806 short chain dehydroge 62.6 14 0.0003 31.9 4.8 36 1-37 1-37 (248)
450 PRK14851 hypothetical protein; 61.8 11 0.00023 38.7 4.4 23 7-29 44-66 (679)
451 TIGR03201 dearomat_had 6-hydro 61.8 36 0.00079 31.3 7.7 29 7-36 168-196 (349)
452 PRK03803 murD UDP-N-acetylmura 61.7 45 0.00098 32.0 8.6 89 8-127 8-97 (448)
453 PRK14620 NAD(P)H-dependent gly 61.6 7.6 0.00016 35.7 3.1 22 8-29 2-23 (326)
454 PRK10084 dTDP-glucose 4,6 dehy 61.6 11 0.00023 34.7 4.1 29 8-36 2-31 (352)
455 PF07683 CobW_C: Cobalamin syn 61.3 14 0.00029 27.1 3.9 46 248-293 2-50 (94)
456 COG1832 Predicted CoA-binding 61.3 58 0.0013 26.3 7.5 83 7-126 17-103 (140)
457 COG1091 RfbD dTDP-4-dehydrorha 61.2 9.5 0.00021 34.6 3.5 30 8-39 2-32 (281)
458 PLN02827 Alcohol dehydrogenase 61.2 34 0.00074 32.1 7.5 29 7-36 195-224 (378)
459 PF01370 Epimerase: NAD depend 61.2 13 0.00029 31.5 4.4 29 9-38 1-30 (236)
460 smart00833 CobW_C Cobalamin sy 61.2 14 0.0003 26.8 3.9 47 248-294 2-52 (92)
461 PRK11150 rfaD ADP-L-glycero-D- 61.1 12 0.00025 33.8 4.1 30 9-39 2-32 (308)
462 PRK02006 murD UDP-N-acetylmura 61.0 42 0.0009 32.9 8.3 31 7-39 8-38 (498)
463 PRK08017 oxidoreductase; Provi 60.7 15 0.00032 31.8 4.7 30 7-37 3-33 (256)
464 PRK10217 dTDP-glucose 4,6-dehy 60.4 13 0.00028 34.3 4.4 32 7-39 2-34 (355)
465 cd05283 CAD1 Cinnamyl alcohol 60.3 58 0.0013 29.6 8.7 30 8-38 172-201 (337)
466 PRK09897 hypothetical protein; 60.2 12 0.00025 37.3 4.2 32 7-39 2-34 (534)
467 PRK09291 short chain dehydroge 60.1 15 0.00032 31.9 4.6 30 7-37 3-33 (257)
468 PRK10083 putative oxidoreducta 60.1 33 0.00071 31.2 7.0 31 8-39 163-194 (339)
469 PRK06947 glucose-1-dehydrogena 59.7 15 0.00032 31.7 4.5 32 5-37 1-33 (248)
470 PRK09135 pteridine reductase; 59.2 18 0.00038 31.1 4.8 30 7-37 7-37 (249)
471 PLN02896 cinnamyl-alcohol dehy 59.1 15 0.00033 33.9 4.7 30 7-37 11-41 (353)
472 PRK08243 4-hydroxybenzoate 3-m 59.0 13 0.00028 35.0 4.2 31 5-36 1-31 (392)
473 TIGR01214 rmlD dTDP-4-dehydror 58.9 13 0.00027 33.0 3.9 29 8-37 1-30 (287)
474 PRK07023 short chain dehydroge 58.6 15 0.00032 31.7 4.2 30 7-37 2-32 (243)
475 PRK05732 2-octaprenyl-6-methox 58.6 14 0.0003 34.5 4.3 30 7-36 4-35 (395)
476 COG1004 Ugd Predicted UDP-gluc 58.5 12 0.00026 35.6 3.8 29 7-36 1-29 (414)
477 KOG0022 Alcohol dehydrogenase, 58.3 39 0.00085 31.4 6.9 91 8-121 195-287 (375)
478 cd08301 alcohol_DH_plants Plan 58.0 52 0.0011 30.5 8.1 31 7-37 189-219 (369)
479 PF01494 FAD_binding_3: FAD bi 58.0 16 0.00036 32.9 4.6 25 7-32 2-26 (356)
480 cd05297 GH4_alpha_glucosidase_ 58.0 20 0.00042 34.5 5.3 17 7-23 1-17 (423)
481 PRK12464 1-deoxy-D-xylulose 5- 57.9 12 0.00026 35.5 3.6 103 11-121 1-111 (383)
482 PRK12550 shikimate 5-dehydroge 57.8 32 0.00069 31.0 6.3 32 7-39 123-154 (272)
483 TIGR02360 pbenz_hydroxyl 4-hyd 57.4 14 0.0003 34.9 4.1 28 5-33 1-28 (390)
484 COG0451 WcaG Nucleoside-diphos 57.4 15 0.00032 32.8 4.1 29 8-37 2-31 (314)
485 PRK09126 hypothetical protein; 57.4 14 0.00031 34.4 4.2 31 5-36 2-32 (392)
486 PRK06617 2-octaprenyl-6-methox 57.4 14 0.00031 34.5 4.2 26 7-33 2-27 (374)
487 PRK02318 mannitol-1-phosphate 57.4 12 0.00027 35.3 3.7 31 7-37 1-31 (381)
488 PRK07523 gluconate 5-dehydroge 57.1 19 0.00042 31.2 4.8 29 7-36 11-40 (255)
489 PRK06475 salicylate hydroxylas 57.0 13 0.00029 35.0 3.9 26 7-33 3-28 (400)
490 PRK06753 hypothetical protein; 56.8 15 0.00032 34.1 4.2 26 7-33 1-26 (373)
491 COG0686 Ald Alanine dehydrogen 56.7 20 0.00043 33.2 4.7 31 7-37 169-200 (371)
492 PRK06996 hypothetical protein; 56.6 17 0.00038 34.2 4.6 28 1-29 7-34 (398)
493 PTZ00318 NADH dehydrogenase-li 56.4 19 0.00041 34.4 4.9 31 6-37 10-40 (424)
494 PRK07588 hypothetical protein; 56.3 14 0.00031 34.6 4.0 27 7-34 1-27 (391)
495 PRK06179 short chain dehydroge 56.2 22 0.00047 31.2 4.9 30 7-37 5-35 (270)
496 PRK09564 coenzyme A disulfide 56.0 14 0.0003 35.4 3.9 30 8-37 2-32 (444)
497 PRK06988 putative formyltransf 55.9 17 0.00036 33.5 4.3 33 5-38 1-33 (312)
498 TIGR03570 NeuD_NnaD sugar O-ac 55.6 20 0.00044 29.7 4.5 31 8-39 1-31 (201)
499 PRK07666 fabG 3-ketoacyl-(acyl 55.5 23 0.00051 30.3 5.0 30 7-37 8-38 (239)
500 cd08300 alcohol_DH_class_III c 55.4 83 0.0018 29.1 9.0 31 7-37 188-218 (368)
No 1
>PTZ00434 cytosolic glyceraldehyde 3-phosphate dehydrogenase; Provisional
Probab=100.00 E-value=1.5e-78 Score=552.60 Aligned_cols=290 Identities=57% Similarity=0.942 Sum_probs=274.8
Q ss_pred CeeEEEEEecCHHHHHHHHHHHcC----CCcEEEEEecCCCChhhhhhcccccccCCCCcCcceee--------eCCcee
Q 022491 5 KKIKIGINGFGRIGRLVARVALQR----DDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKV--------KDEKTL 72 (296)
Q Consensus 5 m~i~vgI~G~G~iG~~l~r~l~~~----p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~--------~~~~~l 72 (296)
|++||||||||||||.++|++.+. +++|+|+|||+..++++++|+|+|||+||+|+ +.+.. +++ .|
T Consensus 2 m~ikVgINGFGRIGR~v~R~~~~~~~~~~~ievVAINd~~~~~~~~ayLlkyDS~hG~~~-~~v~~~~~~~~~~~~~-~l 79 (361)
T PTZ00434 2 APIKVGINGFGRIGRMVFQAICDQGLIGTEIDVVAVVDMSTNAEYFAYQMKYDTVHGRPK-YTVETTKSSPSVKTDD-VL 79 (361)
T ss_pred CceEEEEECcChHHHHHHHHHHHcccCCCCeEEEEEeCCCCChhheeeeeeeecCCCCcC-CceeecccccccccCC-EE
Confidence 558999999999999999998764 68999999997678999999999999999999 77765 344 69
Q ss_pred EECCEEEEEE-ecCCCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCCCCC-CCeEEcccChhccCC-CC
Q 022491 73 LFGEKPVAVF-GFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKD-APMFVVGVNEKEYKP-EL 149 (296)
Q Consensus 73 ~~~~~~i~~~-~~~d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~~~d-~~~~v~gvn~~~l~~-~~ 149 (296)
.+||+.|.++ +++||++++|.+.++|+|+||||.|.+++.+..|+++|+|||+||+|++| .+++|||+|++.|++ ..
T Consensus 80 ~ing~~I~~~~~~~dP~~ipW~~~gvD~ViE~TG~f~t~~~a~~Hl~~GAKkViiSAP~~d~~~t~V~GVN~~~y~~~~~ 159 (361)
T PTZ00434 80 VVNGHRIKCVKAQRNPADLPWGKLGVDYVIESTGLFTDKLAAEGHLKGGAKKVVISAPASGGAKTIVMGVNQHEYSPTEH 159 (361)
T ss_pred EECCEEEEEEEecCChhhCchhhcCCCEEEeCceeeccHHHHhhhhhcCCCEEEECCCCCCCCceEEEcCChHHcCcccC
Confidence 9999999986 88899999999999999999999999999999999999999999999886 679999999999985 47
Q ss_pred CeEEcCCcchhhhHhHHHHH-HhhcCeeEEEEEEEeecCCcccccCCCCCccccCcccccceeeeccCChhhHHHHhccc
Q 022491 150 DIVSNASCTTNCLAPLAKVI-HDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPA 228 (296)
Q Consensus 150 ~iIs~p~C~~tal~~~l~~L-~~~~gi~~~~~~~v~a~sg~~~~~d~~~~~~~~~~r~~~~ni~P~~~g~~~~~~~~~pe 228 (296)
++|||+||||+||+|+++.| +++|||++++|||+|++|++|+++|+++++|||++|++++||||+.+|+++++.+++|+
T Consensus 160 ~IiSnASCTTNcLAP~~kvL~~~~fGI~~g~mTTVHayT~~Q~~~D~~~~kD~Rr~Raaa~nIIPtsTGAAkAv~~VlP~ 239 (361)
T PTZ00434 160 HVVSNASCTTNCLAPIVHVLTKEGFGIETGLMTTIHSYTATQKTVDGVSVKDWRGGRAAAVNIIPSTTGAAKAVGMVIPS 239 (361)
T ss_pred cEEECCChHHHhhHHHHHHhhcCCcceEEEEEEEEecccCCcccccCcCcccccccccccccCccCCcchhhhhceeccc
Confidence 89999999999999999999 79999999999999999999999999966799999999999999999999999999999
Q ss_pred cCCceeEEEEEeeeCceEEEEEEEEeecCCCHHHHHHHHHHhhcCcCCCcccccCCceeeecCCCCCC
Q 022491 229 LNGKLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSR 296 (296)
Q Consensus 229 l~~~v~~~~~~VP~~~g~~~~~~~~l~~~~~~~ev~~~~~~~~~~~~~~~~~~~~~~~vs~d~~~~~~ 296 (296)
|+|+++++++|||+.+|++++++++++++++.|||+++|+++++++|||||+|+|+|+||+||+|+||
T Consensus 240 L~GKl~G~a~RVPt~nvS~vDLt~~l~k~~t~eein~a~k~aa~~~lkgIl~y~~~plVS~Df~g~~~ 307 (361)
T PTZ00434 240 TKGKLTGMSFRVPTPDVSVVDLTFRATRDTSIQEIDAAIKRASQTYMKGILGFTDDELVSADFINDNR 307 (361)
T ss_pred cCCceeeEEEecccCcEeEEEEEEEeCCCCCHHHHHHHHHHhhhccccCcccccCCCccccccCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999996
No 2
>PRK15425 gapA glyceraldehyde-3-phosphate dehydrogenase A; Provisional
Probab=100.00 E-value=4.8e-76 Score=536.19 Aligned_cols=288 Identities=65% Similarity=1.031 Sum_probs=274.6
Q ss_pred CeeEEEEEecCHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEec
Q 022491 5 KKIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGF 84 (296)
Q Consensus 5 m~i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~ 84 (296)
|++||||||||||||.++|++.+++++|+|+|||. .++++++|+|+|||+||+|+ +.+..+++ .|.++|+.|.++++
T Consensus 1 m~~~i~inGfGRIGr~~~r~~~~~~~~~vvaiNd~-~~~~~~ayll~yDs~hg~~~-~~v~~~~~-~l~v~g~~I~v~~~ 77 (331)
T PRK15425 1 MTIKVGINGFGRIGRIVFRAAQKRSDIEIVAINDL-LDADYMAYMLKYDSTHGRFD-GTVEVKDG-HLIVNGKKIRVTAE 77 (331)
T ss_pred CceEEEEEeeChHHHHHHHHHHHCCCCEEEEEecC-CCHHHHHHHHccccCCCCcC-CcEEecCC-EEEECCeEEEEEEc
Confidence 34899999999999999999888899999999996 78899999999999999999 88877665 59999999999998
Q ss_pred CCCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCCCCC-CCeEEcccChhccCCCCCeEEcCCcchhhhH
Q 022491 85 RNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKD-APMFVVGVNEKEYKPELDIVSNASCTTNCLA 163 (296)
Q Consensus 85 ~d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~~~d-~~~~v~gvn~~~l~~~~~iIs~p~C~~tal~ 163 (296)
++|++++|.+.++|+||||||.+.+++.++.|+++|+|+|++|+++++ .|++|||+|++.++ ..++||||+|+|+|++
T Consensus 78 ~dp~~~~w~~~gvDiVle~tG~f~s~~~a~~hl~aGak~V~iSap~~~~vp~vV~gVN~~~~~-~~~IISnaSCtTn~La 156 (331)
T PRK15425 78 RDPANLKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVVMTGPSKDNTPMFVKGANFDKYA-GQDIVSNASCTTNCLA 156 (331)
T ss_pred CChhhCcccccCCCEEEEecchhhcHHHHHHHHHCCCEEEEeCCCCCCCCCEEEcccCHHHcC-CCCEEECCCcHHHHHH
Confidence 899999998889999999999999999999999999999999998775 79999999999997 5789999999999999
Q ss_pred hHHHHHHhhcCeeEEEEEEEeecCCcccccCCCCCccccCcccccceeeeccCChhhHHHHhccccCCceeEEEEEeeeC
Q 022491 164 PLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTV 243 (296)
Q Consensus 164 ~~l~~L~~~~gi~~~~~~~v~a~sg~~~~~d~~~~~~~~~~r~~~~ni~P~~~g~~~~~~~~~pel~~~v~~~~~~VP~~ 243 (296)
|+++||+++|||+++.+||+|++|++|.++|+++.+++|++|++++|++|+.+|+++++.+++|+|+|+++++++||||+
T Consensus 157 pvlk~L~~~fgI~~g~mTTvha~T~~q~llD~~~~~d~r~~R~aa~NiIPt~tGaa~av~kIlP~L~gkl~g~avRVPv~ 236 (331)
T PRK15425 157 PLAKVINDNFGIIEGLMTTVHATTATQKTVDGPSHKDWRGGRGASQNIIPSSTGAAKAVGKVLPELNGKLTGMAFRVPTP 236 (331)
T ss_pred HHHHHHHHhCCeEEEEEEEEEeccCccccccCCCCcccccCcchhhceecccCCchHHHHhhccccCCeEEEEEEEeccc
Confidence 99999999999999999999999999999998866799999999999999999999999999999999999999999999
Q ss_pred ceEEEEEEEEeecCCCHHHHHHHHHHhhcCcCCCcccccCCceeeecCCCCCC
Q 022491 244 DVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSR 296 (296)
Q Consensus 244 ~g~~~~~~~~l~~~~~~~ev~~~~~~~~~~~~~~~~~~~~~~~vs~d~~~~~~ 296 (296)
+||+.+++++++++++.||++++|+++++++||||++|+++|+||+||+|+||
T Consensus 237 ~gs~~dltv~l~~~~t~eev~~al~~aa~~~l~gil~~~~~~~VS~D~~~~~~ 289 (331)
T PRK15425 237 NVSVVDLTVRLEKAATYEQIKAAVKAAAEGEMKGVLGYTEDDVVSTDFNGEVC 289 (331)
T ss_pred CeEEEEEEEEECCCCCHHHHHHHHHHHhhccccccccccCCcEeeeecCCCCc
Confidence 99999999999999999999999999999999999999999999999999997
No 3
>PTZ00023 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=100.00 E-value=6.8e-76 Score=536.39 Aligned_cols=290 Identities=67% Similarity=1.062 Sum_probs=275.3
Q ss_pred CeeEEEEEecCHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEec
Q 022491 5 KKIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGF 84 (296)
Q Consensus 5 m~i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~ 84 (296)
|++||||||||||||.++|++.+++++|+|+|||+..++++++|+|+|||+||+|+ +.+..+++ .|.+||+.|+++++
T Consensus 1 m~~ki~INGfGRIGr~v~r~~~~~~~~~vvaiNd~~~~~~~~ayll~yDS~hG~~~-~~v~~~~~-~l~i~g~~i~~~~~ 78 (337)
T PTZ00023 1 MVVKLGINGFGRIGRLVFRAALEREDVEVVAINDPFMTLDYMCYLLKYDSVHGSLP-AEVSVTDG-FLMIGSKKVHVFFE 78 (337)
T ss_pred CceEEEEECcChHHHHHHHHHHhcCCeEEEEecCCCCChHHhhhhheeecCCCCCC-CcEEecCC-EEEECCeEEEEEeC
Confidence 45899999999999999999888899999999997678999999999999999999 88877665 59999999999999
Q ss_pred CCCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCCCCC-CCeEEcccChhccCCCCCeEEcCCcchhhhH
Q 022491 85 RNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKD-APMFVVGVNEKEYKPELDIVSNASCTTNCLA 163 (296)
Q Consensus 85 ~d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~~~d-~~~~v~gvn~~~l~~~~~iIs~p~C~~tal~ 163 (296)
+||.+++|.+.++|+||||||.+.++++++.|+++|+|+|++|++.++ .|++|||+|++.+++..+|||||+|+|+|++
T Consensus 79 ~dp~~lpW~~~gvDiVle~tG~~~s~~~a~~~l~aGak~V~iSap~~~~vp~vV~gVN~~~~~~~~~IISnasCTTn~La 158 (337)
T PTZ00023 79 KDPAAIPWGKNGVDVVCESTGVFLTKEKAQAHLKGGAKKVIMSAPPKDDTPIYVMGVNHTQYDKSQRIVSNASCTTNCLA 158 (337)
T ss_pred CChhhCCccccCCCEEEEecchhcCHHHHHHHhhCCCEEEEeCCCCCCCCCeEEcccCHHHhCCCCCEEECCccHHHHHH
Confidence 999999999999999999999999999999999999999999988765 7999999999999855689999999999999
Q ss_pred hHHHHHHhhcCeeEEEEEEEeecCCcccccCCCC--CccccCcccccceeeeccCChhhHHHHhccccCCceeEEEEEee
Q 022491 164 PLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPS--MKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVP 241 (296)
Q Consensus 164 ~~l~~L~~~~gi~~~~~~~v~a~sg~~~~~d~~~--~~~~~~~r~~~~ni~P~~~g~~~~~~~~~pel~~~v~~~~~~VP 241 (296)
|+++||++.|||+++.+||+|++|..|..+|+++ .+++|++|++++|++|+.+|+++++.+++|||+++++++++|||
T Consensus 159 p~lk~L~~~fgI~~~~~TT~ha~T~~Q~lld~~~~~~kd~r~~r~~a~NiIP~~tGaakav~kVlPeL~gkl~g~avRVP 238 (337)
T PTZ00023 159 PLAKVVNDKFGIVEGLMTTVHASTANQLTVDGPSKGGKDWRAGRCAGVNIIPASTGAAKAVGKVIPELNGKLTGMAFRVP 238 (337)
T ss_pred HHHHHHHHhcCeeEEEEEEEEecCCCceecCCcCcccCCCcccceeeccccccCCCcchhhhheecccCCcEEEEEEEec
Confidence 9999999999999999999999999999999875 36899999999999999999999999999999999999999999
Q ss_pred eCceEEEEEEEEeecCCCHHHHHHHHHHhhcCcCCCcccccCCceeeecCCCCCC
Q 022491 242 TVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSR 296 (296)
Q Consensus 242 ~~~g~~~~~~~~l~~~~~~~ev~~~~~~~~~~~~~~~~~~~~~~~vs~d~~~~~~ 296 (296)
+++||+.+++++++++++.||++++|+++++++|||||+|+++|+||+||+||||
T Consensus 239 t~~~s~~dltv~l~k~vt~eev~~al~~aa~~~l~gil~~~~~~~VS~D~~~~~~ 293 (337)
T PTZ00023 239 VPDVSVVDLTCKLAKPAKYEEIVAAVKKAAEGPLKGILGYTDDEVVSSDFVHDKR 293 (337)
T ss_pred ccCeEEEEEEEEECCCCCHHHHHHHHHHHhcccccCCcCccCCCeeeeecCCCCC
Confidence 9999999999999999999999999999999999999999999999999999997
No 4
>PLN02237 glyceraldehyde-3-phosphate dehydrogenase B
Probab=100.00 E-value=3.5e-75 Score=541.96 Aligned_cols=289 Identities=49% Similarity=0.800 Sum_probs=273.2
Q ss_pred CeeEEEEEecCHHHHHHHHHHHcC--CCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEE
Q 022491 5 KKIKIGINGFGRIGRLVARVALQR--DDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVF 82 (296)
Q Consensus 5 m~i~vgI~G~G~iG~~l~r~l~~~--p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~ 82 (296)
|++||||||||||||.++|.+.++ +++|+|+|||. .++++++|+|+|||+||+|+ +.++..+++.|.++|+.|.++
T Consensus 74 ~~ikVgINGFGRIGR~vlR~~~~~~~~~ievVaINd~-~~~~~~ayLlkyDS~hG~f~-~~v~~~~~~~L~v~Gk~I~V~ 151 (442)
T PLN02237 74 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS-GGVKNASHLLKYDSMLGTFK-ADVKIVDDETISVDGKPIKVV 151 (442)
T ss_pred ceEEEEEECCChHHHHHHHHHHHccCCCeEEEEECCC-CCHHHHHHHHccccCCCCcC-CceEECCCCEEEECCEEEEEE
Confidence 679999999999999999998755 78999999997 78899999999999999999 887653344699999999999
Q ss_pred ecCCCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCCCCC--CCeEEcccChhccCCC-CCeEEcCCcch
Q 022491 83 GFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKD--APMFVVGVNEKEYKPE-LDIVSNASCTT 159 (296)
Q Consensus 83 ~~~d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~~~d--~~~~v~gvn~~~l~~~-~~iIs~p~C~~ 159 (296)
+.++|.+++|.+.++|+||||||.+.++++++.|+++|+|+|+++++..+ +|++|||+|++.|++. .+|||||+|+|
T Consensus 152 ~~~dp~~l~W~~~gVDiViE~TG~f~s~e~a~~hl~aGAkkV~iSAP~~d~dvptvV~GVN~~~~~~~~~~IISnaSCTT 231 (442)
T PLN02237 152 SNRDPLKLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEDDYDHEVANIVSNASCTT 231 (442)
T ss_pred EcCCchhCChhhcCCCEEEEccChhhhHHHHHHHHhCCCEEEEECCCCCCCCCceEecccCHHHhCcCCCCEEECCchHH
Confidence 88899999998889999999999999999999999999999999988664 7999999999999854 68999999999
Q ss_pred hhhHhHHHHHHhhcCeeEEEEEEEeecCCcccccCCCCCccccCcccccceeeeccCChhhHHHHhccccCCceeEEEEE
Q 022491 160 NCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFR 239 (296)
Q Consensus 160 tal~~~l~~L~~~~gi~~~~~~~v~a~sg~~~~~d~~~~~~~~~~r~~~~ni~P~~~g~~~~~~~~~pel~~~v~~~~~~ 239 (296)
+||+|+++||+++|||+++.|||+|++|++|+++|+++ +|||++|++++||||+.+|+++++.+++|+|+|++.++++|
T Consensus 232 NcLAPvlkvL~d~fGI~~g~mTTvHs~T~dQ~~~D~~h-~D~Rr~Raaa~nIIPtsTGAAkAv~~VlP~L~GKl~g~A~R 310 (442)
T PLN02237 232 NCLAPFVKVLDEEFGIVKGTMTTTHSYTGDQRLLDASH-RDLRRARAAALNIVPTSTGAAKAVSLVLPQLKGKLNGIALR 310 (442)
T ss_pred HHHHHHHHHHHHhcCeeEEEEEEEEeccCCcccccCCC-cccccccccccccccCCcchhhhhceecccCCCceeeEEEe
Confidence 99999999999999999999999999999999999997 79999999999999999999999999999999999999999
Q ss_pred eeeCceEEEEEEEEeec-CCCHHHHHHHHHHhhcCcCCCcccccCCceeeecCCCCCC
Q 022491 240 VPTVDVSVVDLTVRLEK-EATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSR 296 (296)
Q Consensus 240 VP~~~g~~~~~~~~l~~-~~~~~ev~~~~~~~~~~~~~~~~~~~~~~~vs~d~~~~~~ 296 (296)
||+.+|+++++++++++ +++.|||+++|+++++++|||||+|+++|+||+||+|+||
T Consensus 311 VPt~nvS~vDLt~~l~k~~~t~eein~~~k~aa~~~lkgil~y~~~plVS~Df~~~~~ 368 (442)
T PLN02237 311 VPTPNVSVVDLVVNVEKKGITAEDVNAAFRKAADGPLKGILAVCDVPLVSVDFRCSDV 368 (442)
T ss_pred cccCCceEEEEEEEeCCCCCCHHHHHHHHHHhhccccCCeeeeeCCceeeeeecCCCc
Confidence 99999999999999998 7999999999999999999999999999999999999997
No 5
>PRK07403 glyceraldehyde-3-phosphate dehydrogenase; Reviewed
Probab=100.00 E-value=5.2e-75 Score=529.93 Aligned_cols=287 Identities=48% Similarity=0.805 Sum_probs=272.1
Q ss_pred eeEEEEEecCHHHHHHHHHHHcC--CCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEe
Q 022491 6 KIKIGINGFGRIGRLVARVALQR--DDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFG 83 (296)
Q Consensus 6 ~i~vgI~G~G~iG~~l~r~l~~~--p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~ 83 (296)
|+||||||||||||.++|++.++ +++|+|+||+. .++++++|+|+|||+||+|+ +.+..+++ .|.+||+.|.+++
T Consensus 1 ~~ki~INGfGRIGR~~~R~~~~~~~~~~~vvaind~-~~~~~~ayll~yDS~hg~~~-~~v~~~~~-~l~v~g~~I~v~~ 77 (337)
T PRK07403 1 MIRVAINGFGRIGRNFLRCWLGRENSQLELVAINDT-SDPRTNAHLLKYDSMLGKLN-ADISADEN-SITVNGKTIKCVS 77 (337)
T ss_pred CeEEEEEccChHHHHHHHHHHhccCCCeEEEEecCC-CCHHHHHHHHhhccCCCCCC-CcEEEcCC-EEEECCEEEEEEE
Confidence 38999999999999999998776 68999999997 78899999999999999999 88776554 6999999999999
Q ss_pred cCCCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCCCCC--CCeEEcccChhccCC-CCCeEEcCCcchh
Q 022491 84 FRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKD--APMFVVGVNEKEYKP-ELDIVSNASCTTN 160 (296)
Q Consensus 84 ~~d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~~~d--~~~~v~gvn~~~l~~-~~~iIs~p~C~~t 160 (296)
+.||+++||.+.++|+||||||.+.+++.++.|+++|+|+|++|+++.+ .|++|||+|++.+++ ..++||||+|+|+
T Consensus 78 ~~dp~~~~W~~~gvDiV~e~tG~f~s~~~a~~hl~aGak~V~iSap~~d~d~p~vV~gVN~~~~~~~~~~IISnasCTTn 157 (337)
T PRK07403 78 DRNPLNLPWKEWGIDLIIESTGVFVTKEGASKHIQAGAKKVLITAPGKGEDIGTYVVGVNHHEYDHEDHNIISNASCTTN 157 (337)
T ss_pred cCCcccCChhhcCCCEEEeccchhhhHHHHHHHhhCCcEEEEeCCCCCCCCCceEecccCHHHhccCCCCEEECCcHHHH
Confidence 8899999998889999999999999999999999999999999988654 599999999999974 4689999999999
Q ss_pred hhHhHHHHHHhhcCeeEEEEEEEeecCCcccccCCCCCccccCcccccceeeeccCChhhHHHHhccccCCceeEEEEEe
Q 022491 161 CLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRV 240 (296)
Q Consensus 161 al~~~l~~L~~~~gi~~~~~~~v~a~sg~~~~~d~~~~~~~~~~r~~~~ni~P~~~g~~~~~~~~~pel~~~v~~~~~~V 240 (296)
|++|+++||+++|||+++.+||+|++|++|+++|.++ +++|++|++++|+||+.+|+++++.+++|+|+|+++++++||
T Consensus 158 ~Lap~lkvL~~~fgI~~~~mTTiha~T~~q~~~D~~~-~d~r~~raaa~NiIPt~tGaakav~~vlP~L~gki~g~avRV 236 (337)
T PRK07403 158 CLAPIAKVLHDNFGIIKGTMTTTHSYTGDQRILDASH-RDLRRARAAAVNIVPTSTGAAKAVALVIPELKGKLNGIALRV 236 (337)
T ss_pred HHHHHHHHHHHhcCeeEEEEEEEeeecCCcccccccc-cccccccccccccccCCcchhhhhhhcCcccCCcEEEEEEEe
Confidence 9999999999999999999999999999999999998 699999999999999999999999999999999999999999
Q ss_pred eeCceEEEEEEEEeecCCCHHHHHHHHHHhhcCcCCCcccccCCceeeecCCCCCC
Q 022491 241 PTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSR 296 (296)
Q Consensus 241 P~~~g~~~~~~~~l~~~~~~~ev~~~~~~~~~~~~~~~~~~~~~~~vs~d~~~~~~ 296 (296)
|+++||+++++++++++++.|||+++|+++++++|||||+|+++|+||+||+||||
T Consensus 237 Pt~~vs~~dl~v~l~k~~t~eeI~~~~~~as~~~l~gil~~~~~~~VS~D~~~~~~ 292 (337)
T PRK07403 237 PTPNVSVVDLVVQVEKRTITEQVNEVLKDASEGPLKGILEYSDLPLVSSDYRGTDA 292 (337)
T ss_pred ccCCcEEEEEEEEECCCCCHHHHHHHHHHHhhCccccccCeecCCEeeeeecCCCC
Confidence 99999999999999999999999999999999999999999999999999999987
No 6
>PLN02358 glyceraldehyde-3-phosphate dehydrogenase
Probab=100.00 E-value=1.5e-74 Score=529.49 Aligned_cols=294 Identities=91% Similarity=1.362 Sum_probs=279.6
Q ss_pred CCCCCeeEEEEEecCHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCc-ceeeeCCceeEECCEEE
Q 022491 1 MAGDKKIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHN-ELKVKDEKTLLFGEKPV 79 (296)
Q Consensus 1 m~~~m~i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~-~v~~~~~~~l~~~~~~i 79 (296)
|+.. ++||||+|+|+||+.++|.+.++|++|+++|+|+..++++++|+|+|||+||+|+ + .+..++|+.|.++|+.|
T Consensus 1 ~~~~-~lrVaI~G~GrIGr~~~r~~~~~~~velvaI~D~~~~~~~~a~ll~yDs~~g~~~-~~~v~~~~g~~l~~~g~~i 78 (338)
T PLN02358 1 MADK-KIRIGINGFGRIGRLVARVVLQRDDVELVAVNDPFITTEYMTYMFKYDSVHGQWK-HHELKVKDDKTLLFGEKPV 78 (338)
T ss_pred CCCC-ceEEEEEeecHHHHHHHHHHhhCCCcEEEEEeCCCCCHHHHHHhheeecCCCCcC-CCeEEECCCCEEEECCEEE
Confidence 5643 5899999999999999999998999999999997688999999999999999998 5 77765666799999999
Q ss_pred EEEecCCCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCCCCCCCeEEcccChhccCCCCCeEEcCCcch
Q 022491 80 AVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKDAPMFVVGVNEKEYKPELDIVSNASCTT 159 (296)
Q Consensus 80 ~~~~~~d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~~~d~~~~v~gvn~~~l~~~~~iIs~p~C~~ 159 (296)
.++...||++++|.+.++|+||||||.+.++++++.|+++|+|+|++|++++|.|++|||+|++.+++..++||||||+|
T Consensus 79 ~v~~~~~p~~~~w~~~gvDiVie~tG~~~s~~~a~~hl~aGak~ViiSap~~dvp~iV~gVN~~~~~~~~~IISnasCTT 158 (338)
T PLN02358 79 TVFGIRNPEDIPWGEAGADFVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKDAPMFVVGVNEHEYKSDLDIVSNASCTT 158 (338)
T ss_pred EEEEcCCcccCcccccCCCEEEEcccchhhHHHHHHHHHCCCEEEEeCCCCCCCCeEecCcCHHHhCCCCCEEECCCchH
Confidence 99998899999998889999999999999999999999999999999999888899999999999986578999999999
Q ss_pred hhhHhHHHHHHhhcCeeEEEEEEEeecCCcccccCCCCCccccCcccccceeeeccCChhhHHHHhccccCCceeEEEEE
Q 022491 160 NCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFR 239 (296)
Q Consensus 160 tal~~~l~~L~~~~gi~~~~~~~v~a~sg~~~~~d~~~~~~~~~~r~~~~ni~P~~~g~~~~~~~~~pel~~~v~~~~~~ 239 (296)
+||+|+|+||++.|||+++.|||+|++|++|+++|+++.+++|++|++++|++|+.+|+++++.+++|+++++++++++|
T Consensus 159 n~Lap~lk~L~~~fgI~~~~mTTiha~T~~q~l~d~~~~~d~r~~ra~a~NiIP~~tGaaka~~kIlP~l~gkl~g~avR 238 (338)
T PLN02358 159 NCLAPLAKVINDRFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPSLNGKLTGMSFR 238 (338)
T ss_pred HHHHHHHHHHHHhcCeeEEEEEEEEeecCcccccCCCCCccccCccccccccccCCcchhhhhhhccccCCCcEEEEEEE
Confidence 99999999999999999999999999999999999886679999999999999999999999999999999999999999
Q ss_pred eeeCceEEEEEEEEeecCCCHHHHHHHHHHhhcCcCCCcccccCCceeeecCCCCCC
Q 022491 240 VPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSR 296 (296)
Q Consensus 240 VP~~~g~~~~~~~~l~~~~~~~ev~~~~~~~~~~~~~~~~~~~~~~~vs~d~~~~~~ 296 (296)
||+++||+.+++++++++++.||++++|+++++++|||||+|+++|+||+||+|+||
T Consensus 239 VPv~~gs~~dl~v~~~~~~t~eev~~~l~~a~~~~l~gil~~~~~~~VS~D~~~~~~ 295 (338)
T PLN02358 239 VPTVDVSVVDLTVRLEKAATYDEIKKAIKEESEGKLKGILGYTEDDVVSTDFVGDNR 295 (338)
T ss_pred eeEcCeeEEEEEEEECCCCCHHHHHHHHHHHhhccccCcccccCCceeeeecCCCCc
Confidence 999999999999999999999999999999999999999999999999999999997
No 7
>PLN02272 glyceraldehyde-3-phosphate dehydrogenase
Probab=100.00 E-value=1.3e-74 Score=537.69 Aligned_cols=289 Identities=76% Similarity=1.169 Sum_probs=275.3
Q ss_pred eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEecCC
Q 022491 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRN 86 (296)
Q Consensus 7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~~d 86 (296)
+||||||||||||.++|.+..++++++++|||+..+.++++|+|+|||+||+|+ +.++..++..|.++|+.|.+++.++
T Consensus 86 ~kvgInGFGRIGR~v~R~~~~~~~i~vvaINdp~~~~~~~ayllkyDS~hG~f~-~~v~~~~~~~l~~~G~~I~V~~~~d 164 (421)
T PLN02272 86 TKIGINGFGRIGRLVLRIATSRDDIEVVAVNDPFIDAKYMAYMFKYDSTHGNFK-GTINVVDDSTLEINGKQIKVTSKRD 164 (421)
T ss_pred eEEEEECcCHHHHHHHHHHhhcCCcEEEEecCCCCCHHHHHHHhhhccCCCCCC-CcEEEccCCEEEECCEEEEEEecCC
Confidence 799999999999999999887788999999997788999999999999999999 8887523336999999999999889
Q ss_pred CCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCCCCCCCeEEcccChhccCCCCCeEEcCCcchhhhHhHH
Q 022491 87 PEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKDAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLA 166 (296)
Q Consensus 87 ~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~~~d~~~~v~gvn~~~l~~~~~iIs~p~C~~tal~~~l 166 (296)
|++++|.+.++|+||||||.+.+++.++.|+++|+|++|||+|++|.|++|||+|++.|++..+|||||+|+|+||+|++
T Consensus 165 p~~~~w~~~gVDiVlesTG~f~s~e~a~~hl~aGAkkVVIdap~~dvPlvV~gVN~~~l~~~~~IISnaSCTTn~Lap~l 244 (421)
T PLN02272 165 PAEIPWGDFGAEYVVESSGVFTTVEKASAHLKGGAKKVVISAPSADAPMFVVGVNEKTYKPNMNIVSNASCTTNCLAPLA 244 (421)
T ss_pred cccCcccccCCCEEEEcCchhccHHHHHHHhhCCCCEEEECCCCCCCCeEEeccCHHHhCCCCCeeeCCCcHHHHHHHHH
Confidence 99999987799999999999999999999999999999999998888999999999999865789999999999999999
Q ss_pred HHHHhhcCeeEEEEEEEeecCCcccccCCCCCccccCcccccceeeeccCChhhHHHHhccccCCceeEEEEEeeeCceE
Q 022491 167 KVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVDVS 246 (296)
Q Consensus 167 ~~L~~~~gi~~~~~~~v~a~sg~~~~~d~~~~~~~~~~r~~~~ni~P~~~g~~~~~~~~~pel~~~v~~~~~~VP~~~g~ 246 (296)
+||++.|||+++.|||+|++|++|+++|+++.++++++|++++|+||+.+|++++..+++|+|+|+++++++||||++||
T Consensus 245 k~L~~~fGI~~g~mTTvha~T~tQ~llD~~~~~d~r~~R~aa~NIIPt~tGaakav~kVLP~L~gkl~gtaVRVPv~~gs 324 (421)
T PLN02272 245 KVVHEEFGILEGLMTTVHATTATQKTVDGPSMKDWRGGRGASQNIIPSSTGAAKAVGKVLPELNGKLTGMAFRVPTPNVS 324 (421)
T ss_pred HHHHHhCCeEEEEEEEEEeccCccccccCccccccccCCCcccccccCCCccchhhhhcccccCCcEEEEEEEeccCceE
Confidence 99999999999999999999999999998866799999999999999999999999999999999999999999999999
Q ss_pred EEEEEEEeecCCCHHHHHHHHHHhhcCcCCCcccccCCceeeecCCCCCC
Q 022491 247 VVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSR 296 (296)
Q Consensus 247 ~~~~~~~l~~~~~~~ev~~~~~~~~~~~~~~~~~~~~~~~vs~d~~~~~~ 296 (296)
+.+++++++++++.||++++|+++++++|||||+|+|+|+||+||+|+||
T Consensus 325 ~~dltv~lek~~s~eev~~alk~a~~~~l~gil~y~~~~lVS~Df~~~~~ 374 (421)
T PLN02272 325 VVDLTCRLEKSASYEDVKAAIKYASEGPLKGILGYTDEDVVSNDFVGDSR 374 (421)
T ss_pred EEEEEEEECCCCCHHHHHHHHHHHhccccccccccccCCEeeeecCCCCC
Confidence 99999999999999999999999999999999999999999999999997
No 8
>PLN03096 glyceraldehyde-3-phosphate dehydrogenase A; Provisional
Probab=100.00 E-value=2e-74 Score=534.07 Aligned_cols=289 Identities=47% Similarity=0.769 Sum_probs=275.5
Q ss_pred CeeEEEEEecCHHHHHHHHHHHcC--CCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEE
Q 022491 5 KKIKIGINGFGRIGRLVARVALQR--DDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVF 82 (296)
Q Consensus 5 m~i~vgI~G~G~iG~~l~r~l~~~--p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~ 82 (296)
|++||||||||+|||.++|+|.++ |.+++++|||. .++++++|+|+|||+||+|+ +.+..++|+.|.++|+.|.++
T Consensus 59 ~~~kVaInGfGrIGR~vlr~l~~~~~~~~evvaINd~-~~~~~~ayLl~yDS~hG~f~-~~v~~~~g~~l~v~gk~I~v~ 136 (395)
T PLN03096 59 AKIKVAINGFGRIGRNFLRCWHGRKDSPLDVVAINDT-GGVKQASHLLKYDSTLGTFD-ADVKPVGDDAISVDGKVIKVV 136 (395)
T ss_pred cccEEEEECcCHHHHHHHHHHHhCCCCCeEEEEEcCC-CCHHHHHHHHhhcccCCCcC-CcEEEecCCEEEECCEEEEEE
Confidence 668999999999999999999876 78999999997 78899999999999999999 888765666799999999999
Q ss_pred ecCCCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCCCCC-CCeEEcccChhccCCCCCeEEcCCcchhh
Q 022491 83 GFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKD-APMFVVGVNEKEYKPELDIVSNASCTTNC 161 (296)
Q Consensus 83 ~~~d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~~~d-~~~~v~gvn~~~l~~~~~iIs~p~C~~ta 161 (296)
+++||++++|.+.++|+||||||.+.+++.++.|+++|+|+|++++++++ +|++|||+|++.|++..+|||||+|+|+|
T Consensus 137 ~~~dp~~~~w~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkV~iSap~~~~~ptvV~GVN~~~l~~~~~IISnaSCTTn~ 216 (395)
T PLN03096 137 SDRNPLNLPWGELGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADDYKHSDPIISNASCTTNC 216 (395)
T ss_pred EcCCcccccccccCCCEEEECcchhhhHHHHHHHHHCCCEEEEeCCCCCCCCCeEeCccCHHHhccCCCEEECCchHHHH
Confidence 99999999998889999999999999999999999999999999998765 79999999999998557899999999999
Q ss_pred hHhHHHHHHhhcCeeEEEEEEEeecCCcccccCCCCCccccCcccccceeeeccCChhhHHHHhccccCCceeEEEEEee
Q 022491 162 LAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVP 241 (296)
Q Consensus 162 l~~~l~~L~~~~gi~~~~~~~v~a~sg~~~~~d~~~~~~~~~~r~~~~ni~P~~~g~~~~~~~~~pel~~~v~~~~~~VP 241 (296)
|+|++++|+++|||+++.|||+|++|++|+++|+++ +++|++|++++|+||+.+|+++++.+++|+|+|+++++++|||
T Consensus 217 LAp~lkvL~~~fGI~~g~mTTiHa~T~~Q~llD~~~-~d~rr~Raaa~NiIPtsTGaakav~kVlP~L~gkl~g~avRVP 295 (395)
T PLN03096 217 LAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDASH-RDLRRARAAALNIVPTSTGAAKAVALVLPNLKGKLNGIALRVP 295 (395)
T ss_pred HHHHHHHHHHhcCeeEEEEEEEEccccccccccCCC-CccccchhhhccccccCCCcchhhhhcccccCCcEEEEEEEcc
Confidence 999999999999999999999999999999999987 6999999999999999999999999999999999999999999
Q ss_pred eCceEEEEEEEEeecCCCHHHHHHHHHHhhcCcCCCcccccCCceeeecCCCCCC
Q 022491 242 TVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSR 296 (296)
Q Consensus 242 ~~~g~~~~~~~~l~~~~~~~ev~~~~~~~~~~~~~~~~~~~~~~~vs~d~~~~~~ 296 (296)
|++||+.+++++++++++.||++++|+++++++|||||+|+++|+||+||+|+||
T Consensus 296 v~~gs~~dltv~~~~~~t~eev~~al~~aa~~~l~gil~~~~~p~VS~Df~~~~~ 350 (395)
T PLN03096 296 TPNVSVVDLVVQVEKKTFAEEVNAAFRDAAEKELKGILAVCDEPLVSVDFRCSDV 350 (395)
T ss_pred ccceEEEEEEEEECCCCCHHHHHHHHHhhhhccccceEEEeCCCEeeeeecCCCC
Confidence 9999999999999999999999999999999999999999999999999999997
No 9
>PRK07729 glyceraldehyde-3-phosphate dehydrogenase; Validated
Probab=100.00 E-value=5.8e-74 Score=523.54 Aligned_cols=288 Identities=48% Similarity=0.819 Sum_probs=272.7
Q ss_pred CeeEEEEEecCHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEec
Q 022491 5 KKIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGF 84 (296)
Q Consensus 5 m~i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~ 84 (296)
|++||||||||||||.++|++.+++++|+|+|||. .++++++|+|+|||+||+|+ +.+..+++ .|.+||+.|+++++
T Consensus 1 m~~ki~INGfGRIGR~~~r~~~~~~~~~vvaINd~-~~~~~~ayll~yDS~hG~~~-~~v~~~~~-~l~v~g~~I~v~~~ 77 (343)
T PRK07729 1 MKTKVAINGFGRIGRMVFRKAIKESAFEIVAINAS-YPSETLAHLIKYDTVHGKFD-GTVEAFED-HLLVDGKKIRLLNN 77 (343)
T ss_pred CceEEEEECcChHHHHHHHHHhhcCCcEEEEecCC-CCHHHHHHHhhhccCCCCCC-CcEEecCC-EEEECCEEEEEEEc
Confidence 45899999999999999999888899999999997 78999999999999999999 88876555 69999999999999
Q ss_pred CCCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCCCCC-CCeEEcccChhccCC-CCCeEEcCCcchhhh
Q 022491 85 RNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKD-APMFVVGVNEKEYKP-ELDIVSNASCTTNCL 162 (296)
Q Consensus 85 ~d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~~~d-~~~~v~gvn~~~l~~-~~~iIs~p~C~~tal 162 (296)
+||+++||.+.++|+||||||.+.++++++.|+++|+|+|++|+++.+ ++++|||+|++.|++ ..++||||+|+|+||
T Consensus 78 ~dp~~~~W~~~gvDiVle~tG~f~s~~~a~~hl~aGak~V~iSap~~d~d~~lV~gVN~~~~~~~~~~IISnaSCTTn~L 157 (343)
T PRK07729 78 RDPKELPWTDLGIDIVIEATGKFNSKEKAILHVEAGAKKVILTAPGKNEDVTIVVGVNEDQLDIEKHTIISNASCTTNCL 157 (343)
T ss_pred CChhhCcccccCCCEEEEccchhhhHhHHHHHHHcCCeEEEeCCCCCCCCCcEEecccHHHhccCCCCEEECCchHHHHH
Confidence 999999998889999999999999999999999999999999988665 556799999999975 368999999999999
Q ss_pred HhHHHHHHhhcCeeEEEEEEEeecCCcccccCCCCCccccCcccccceeeeccCChhhHHHHhccccCCceeEEEEEeee
Q 022491 163 APLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPT 242 (296)
Q Consensus 163 ~~~l~~L~~~~gi~~~~~~~v~a~sg~~~~~d~~~~~~~~~~r~~~~ni~P~~~g~~~~~~~~~pel~~~v~~~~~~VP~ 242 (296)
+|+++||++.|||+++.+||+|++|++|+++|.++ +++|++|+++.|++|..+|+++++.+++|+++|+++++++|||+
T Consensus 158 ap~lk~L~~~fgI~~~~mTTiha~T~~Q~~~D~~~-~d~rr~R~a~~niiPtstgaa~ai~~viP~l~gkl~g~avRVPt 236 (343)
T PRK07729 158 APVVKVLDEQFGIENGLMTTVHAYTNDQKNIDNPH-KDLRRARACGQSIIPTTTGAAKALAKVLPHLNGKLHGMALRVPT 236 (343)
T ss_pred HHHHHHHHHhcCeeEEEEEEEecccCcccccccch-hhhhcccccccceecCCCcchhhHHHhccccCCeEEEEEEEeee
Confidence 99999999999999999999999999999999987 69999999999999999999999999999999999999999999
Q ss_pred CceEEEEEEEEeecCCCHHHHHHHHHHhhcCcCCCcccccCCceeeecCCCCCC
Q 022491 243 VDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSR 296 (296)
Q Consensus 243 ~~g~~~~~~~~l~~~~~~~ev~~~~~~~~~~~~~~~~~~~~~~~vs~d~~~~~~ 296 (296)
++||+.+++++++++++.||++++|+++++++||||++|+++|+||+||+|+||
T Consensus 237 ~~~s~~dltv~l~k~~t~eev~~~l~~a~~~~l~gil~~~~~~~VS~D~~~~~~ 290 (343)
T PRK07729 237 PNVSLVDLVVDVKRDVTVEEINEAFKTAANGALKGILEFSEEPLVSIDFNTNTH 290 (343)
T ss_pred cCeEEEEEEEEECCCCCHHHHHHHHHHHhhCchhhccCccCCCccccccCCCCc
Confidence 999999999999999999999999999999999999999999999999999997
No 10
>TIGR01534 GAPDH-I glyceraldehyde-3-phosphate dehydrogenase, type I. The noise level is set relative not to E4PD, but the next closest outliers, the class II GAPDH's (found in archaea, TIGR01546) and aspartate semialdehyde dehydrogenase (ASADH, TIGR01296) both of which have highest-scoring hits around -225 to the prior model.
Probab=100.00 E-value=2.2e-72 Score=513.04 Aligned_cols=286 Identities=59% Similarity=0.967 Sum_probs=270.9
Q ss_pred EEEEEecCHHHHHHHHHHHcC--CCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCE-EEEEEec
Q 022491 8 KIGINGFGRIGRLVARVALQR--DDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEK-PVAVFGF 84 (296)
Q Consensus 8 ~vgI~G~G~iG~~l~r~l~~~--p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~-~i~~~~~ 84 (296)
||||||||||||.++|++.++ +++++|+|||. .++++++|+|+|||+||+|+ +.+..++++.|.++|+ .|.+++.
T Consensus 1 ~i~INGfGRIGr~~~r~~~~~~~~~~~ivaind~-~~~~~~ayll~yDS~hg~~~-~~v~~~~~~~l~i~g~~~i~v~~~ 78 (327)
T TIGR01534 1 KVGINGFGRIGRLVLRAILEKQGLDLEVVAINDL-TDLEYLAYLLKYDSVHGRFE-GEVTADEDKGLVVNGKFVIVVASE 78 (327)
T ss_pred CEEEEccChHHHHHHHHHHhccCCceEEEEEecC-CCHHHHHHHhcccCCCCCCC-CcEEecCCceEEECCeEEEEEEec
Confidence 699999999999999998877 58999999997 78999999999999999999 8887655424999999 9999998
Q ss_pred CCCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCCCCC-CCeEEcccChhccCCCCCeEEcCCcchhhhH
Q 022491 85 RNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKD-APMFVVGVNEKEYKPELDIVSNASCTTNCLA 163 (296)
Q Consensus 85 ~d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~~~d-~~~~v~gvn~~~l~~~~~iIs~p~C~~tal~ 163 (296)
.+|++++|.+.++|+||||||.+.+++.++.|+++|+|+|++|+++.| +|++|||+|++.+++..++||||+|+|+|++
T Consensus 79 ~dp~~~~w~~~gvDiVle~tG~~~s~~~a~~hl~~Gak~V~iSap~~d~~plvV~gVN~~~~~~~~~IISn~sCtTn~La 158 (327)
T TIGR01534 79 RDPSDLPWKALGVDIVIECTGKFRDKEKLEGHLEAGAKKVLISAPSKGDAPTIVYGVNHDEYDPEERIISNASCTTNCLA 158 (327)
T ss_pred CCcccCchhhcCCCEEEEccchhhcHHHHHHHhhCCCEEEEeCCCCCCCCCeecCCCCHHHhCCCCCEEecCCchHHHHH
Confidence 899999998889999999999999999999999999999999998776 7999999999999865789999999999999
Q ss_pred hHHHHHHhhcCeeEEEEEEEeecCCcccccCCCCCccccCcccccceeeeccCChhhHHHHhccccCCceeEEEEEeeeC
Q 022491 164 PLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTV 243 (296)
Q Consensus 164 ~~l~~L~~~~gi~~~~~~~v~a~sg~~~~~d~~~~~~~~~~r~~~~ni~P~~~g~~~~~~~~~pel~~~v~~~~~~VP~~ 243 (296)
|+|+||++.|||+++.+||+|++|++|+++|+++ ++++++|++++|++|+.+|+++++.+++|+++++++++++||||+
T Consensus 159 p~lk~L~~~fgI~~~~~TTiha~t~~q~lld~~~-~d~r~~r~~a~NiIP~~tg~ak~~~kvlP~L~gkv~~~avRVPv~ 237 (327)
T TIGR01534 159 PLAKVLDEAFGIVSGLMTTVHSYTNDQNLVDGPH-KDLRRARAAALNIIPTSTGAAKAIGKVLPELAGKLTGMAIRVPTP 237 (327)
T ss_pred HHHHHHHHhcCeeEEEEEEEEeecCccccccCCC-CCCcCceEeEeeeeccCCChHHHHhhccccCCCeEEEEEEEeccc
Confidence 9999999999999999999999999999999887 588999999999999999999999999999999999999999999
Q ss_pred ceEEEEEEEEeecCCCHHHHHHHHHHhhcCcCCCcccccCCceeeecCCCCCC
Q 022491 244 DVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSR 296 (296)
Q Consensus 244 ~g~~~~~~~~l~~~~~~~ev~~~~~~~~~~~~~~~~~~~~~~~vs~d~~~~~~ 296 (296)
+||+.+++++++++++.||++++|+++++++||||++|+++|+||+||+|+||
T Consensus 238 ~gs~~dl~v~~~~~~t~eev~~al~~a~~~~l~gil~~~~~~~VS~D~~~~~~ 290 (327)
T TIGR01534 238 NVSLVDLVLNLEKDTTKEEVNAALKEAAEGSLKGVLGYTEDELVSSDFIGSPY 290 (327)
T ss_pred CeEEEEEEEEECCCCCHHHHHHHHHhhhhcccCceeeeeCCCeeeeecCCCCc
Confidence 99999999999999999999999999999999999999999999999999997
No 11
>PTZ00353 glycosomal glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=100.00 E-value=2e-72 Score=513.19 Aligned_cols=290 Identities=30% Similarity=0.547 Sum_probs=270.4
Q ss_pred CeeEEEEEecCHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECC-EEEEEEe
Q 022491 5 KKIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGE-KPVAVFG 83 (296)
Q Consensus 5 m~i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~-~~i~~~~ 83 (296)
|++||||||||||||.++|++.+++++|+|+|||+..++++++|+|+|||+||+|+.+.+..+++ .|.+|| +.|.+++
T Consensus 1 m~~kv~INGfGRIGR~v~R~~~~~~~~~ivaiNd~~~~~~~~ayll~yDS~hG~~~~~~v~~~~~-~l~i~g~~~i~~~~ 79 (342)
T PTZ00353 1 LPITVGINGFGPVGKAVLFASLTDPLVTVVAVNDASVSIAYIAYVLEQESPLSAPDGASIRVVGE-QIVLNGTQKIRVSA 79 (342)
T ss_pred CCeEEEEECCChHHHHHHHHHHhcCCcEEEEecCCCCCHHHHHHHhhhhccCCCCCCCeEEEcCC-EEecCCCeEEEEEe
Confidence 44799999999999999999888889999999996578999999999999999995246766555 599998 8999999
Q ss_pred cCCCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCCCCCCCeEEcccChhccCCCCCeEEcCCcchhhhH
Q 022491 84 FRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKDAPMFVVGVNEKEYKPELDIVSNASCTTNCLA 163 (296)
Q Consensus 84 ~~d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~~~d~~~~v~gvn~~~l~~~~~iIs~p~C~~tal~ 163 (296)
+.+|++++|.+.++|+||||||.+.+.+.+..|+++|+|+++|+.+++|.|++|||+|++.|++..++||||+|+|+|++
T Consensus 80 ~~dp~~~~w~~~gvDiVie~TG~f~~~~~a~~hl~~Gakkviisaps~d~p~vV~gVN~~~~~~~~~IISnaSCTTn~La 159 (342)
T PTZ00353 80 KHDLVEIAWRDYGVQYVVECTGLYSTRSRCWGHVTGGAKGVFVAGQSADAPTVMAGSNDERLSASLPVCCAGAPIAVALA 159 (342)
T ss_pred cCCcccCcccccCCCEEEEcccccccHhhhhhhhhcCCCcEEEeCCCCCCCeEEecCChHHcCCCCCEEECCCHHHHHHH
Confidence 99999999988899999999999999999999999999999999999889999999999999865789999999999999
Q ss_pred hHHHHHHhhcCeeEEEEEEEeecCCcccccCCCCC--ccccCcccccceeeeccCChhhHHHHhccccCCceeEEEEEee
Q 022491 164 PLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSM--KDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVP 241 (296)
Q Consensus 164 ~~l~~L~~~~gi~~~~~~~v~a~sg~~~~~d~~~~--~~~~~~r~~~~ni~P~~~g~~~~~~~~~pel~~~v~~~~~~VP 241 (296)
|+++||+++|||++++|||+|+++ .+...|.+++ +++|++|.+.+|++|..+|..+++.+++|+|+|+++++++|||
T Consensus 160 pvlkvL~~~fGI~~g~mTTvHs~q-~~~~~d~~~~~~~d~rr~RaA~~nIiPtstgaakav~kVlP~L~gkl~g~avRVP 238 (342)
T PTZ00353 160 PVIRALHEVYGVEECSYTAIHGMQ-PQEPIAARSKNSQDWRQTRVAIDAIAPYRDNGAETVCKLLPHLVGRISGSAFQVP 238 (342)
T ss_pred HHHHHHHHhcCeeEEEeeeeeecc-eeecCCCcccccccccccchHHhCCcccCCcchhhhhhhccccCCcEEEEEEEcc
Confidence 999999999999999999999996 5667776553 7999999999999999999999999999999999999999999
Q ss_pred eCceEEEEEEEEeecCCCHHHHHHHHHHhhcCcCCCcccccCCceeeecCCCCCC
Q 022491 242 TVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSR 296 (296)
Q Consensus 242 ~~~g~~~~~~~~l~~~~~~~ev~~~~~~~~~~~~~~~~~~~~~~~vs~d~~~~~~ 296 (296)
|++||+.+++++++++++.||++++|+++++++|||||+|+|+|+||+||+|||+
T Consensus 239 t~~vs~vdltv~~~k~~t~eein~~l~~aa~~~l~gil~~~~~~~VS~Df~~~~~ 293 (342)
T PTZ00353 239 VKKGCAIDMLVRTKQPVSKEVVDSALAEAASDRLNGVLCISKRDMISVDCIPNGK 293 (342)
T ss_pred ccCeEEEEEEEEECCCCCHHHHHHHHHHHhhcccCCeEEecCCCeeeeEeCCCCC
Confidence 9999999999999999999999999999999999999999999999999999985
No 12
>PRK08955 glyceraldehyde-3-phosphate dehydrogenase; Validated
Probab=100.00 E-value=8.8e-72 Score=510.47 Aligned_cols=287 Identities=42% Similarity=0.751 Sum_probs=271.0
Q ss_pred CeeEEEEEecCHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEec
Q 022491 5 KKIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGF 84 (296)
Q Consensus 5 m~i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~ 84 (296)
|++||||+|+|+||+.++|.+.+++++++++++++..+.++++|+|+|||+||+|+ +.+.. .|+.|.++|+.|.++++
T Consensus 1 m~ikigInG~GRiGr~v~r~~~~~~~~~ivaind~~~~~~~~a~ll~yDs~~g~~~-~~v~~-~g~~l~~~g~~i~v~~~ 78 (334)
T PRK08955 1 MTIKVGINGFGRIGRLALRAAWDWPELEFVQINDPAGDAATLAHLLEFDSVHGRWH-HEVTA-EGDAIVINGKRIRTTQN 78 (334)
T ss_pred CCeEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCHHHHHHHhhhhccCCCCC-CCEEE-cCCEEEECCEEEEEEec
Confidence 34899999999999999999999999999999997678999999999999999998 77764 34469999999999988
Q ss_pred CCCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCCCCC--CCeEEcccChhccCC-CCCeEEcCCcchhh
Q 022491 85 RNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKD--APMFVVGVNEKEYKP-ELDIVSNASCTTNC 161 (296)
Q Consensus 85 ~d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~~~d--~~~~v~gvn~~~l~~-~~~iIs~p~C~~ta 161 (296)
+++++++|. ++|+||||||.+.++++++.|+++|+|+|++|+++.+ .|++|||+|++.+++ ..+|||||+|+|+|
T Consensus 79 ~~~~~~~w~--gvDiVle~tG~~~s~~~a~~hl~aGak~V~iSap~~d~d~p~vV~gVN~~~~~~~~~~IISnasCtTn~ 156 (334)
T PRK08955 79 KAIADTDWS--GCDVVIEASGVMKTKALLQAYLDQGVKRVVVTAPVKEEGVLNIVMGVNDHLFDPAIHPIVTAASCTTNC 156 (334)
T ss_pred CChhhCCcc--CCCEEEEccchhhcHHHHHHHHHCCCEEEEECCCCCCCCCceEecccCHHHhcccCCCEEECCccHHHH
Confidence 899999995 9999999999999999999999999999999988654 699999999999985 36899999999999
Q ss_pred hHhHHHHHHhhcCeeEEEEEEEeecCCcccccCCCCCccccCcccccceeeeccCChhhHHHHhccccCCceeEEEEEee
Q 022491 162 LAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVP 241 (296)
Q Consensus 162 l~~~l~~L~~~~gi~~~~~~~v~a~sg~~~~~d~~~~~~~~~~r~~~~ni~P~~~g~~~~~~~~~pel~~~v~~~~~~VP 241 (296)
++|+++||++.|||+++.|||+|++|.+|+.+|+++ +++|++|++++|++|+.+|++++..+++|+|+|+++++++|||
T Consensus 157 Lap~lk~L~~~fgI~~~~mTTvha~t~~q~lld~~~-~d~r~~r~~a~NiIP~~tGaa~a~~kvlP~L~gkl~~~avRVP 235 (334)
T PRK08955 157 LAPVVKVIHEKLGIKHGSMTTIHDLTNTQTILDAPH-KDLRRARACGMSLIPTTTGSATAITEIFPELKGKLNGHAVRVP 235 (334)
T ss_pred HHHHHHHHHHhcCeeEEEEEEEEeccCccccccCCC-cccccchhheeccccccCCCccccceEccccCCcEEEEEEEec
Confidence 999999999999999999999999999999999987 5889999999999999999999999999999999999999999
Q ss_pred eCceEEEEEEEEeecCCCHHHHHHHHHHhhcCcCCCcccccCCceeeecCCCCCC
Q 022491 242 TVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSR 296 (296)
Q Consensus 242 ~~~g~~~~~~~~l~~~~~~~ev~~~~~~~~~~~~~~~~~~~~~~~vs~d~~~~~~ 296 (296)
+++||+.+++++++++++.||++++|+++.+++|||||+|+|+|+||+||+|+||
T Consensus 236 v~~gs~~dl~v~~~~~~s~eev~~~l~~a~~~~l~gil~~~~~~~vS~D~~~~~~ 290 (334)
T PRK08955 236 LANASLTDCVFEVERDTTVEEVNALLKEAAEGELKGILGYEERPLVSIDYKTDPR 290 (334)
T ss_pred cCCeEEEEEEEEECCCCCHHHHHHHHHHhcCCCcCceeccccCCcccceeCCCCc
Confidence 9999999999999999999999999999999999999999999999999999997
No 13
>PRK13535 erythrose 4-phosphate dehydrogenase; Provisional
Probab=100.00 E-value=1.1e-71 Score=509.77 Aligned_cols=286 Identities=37% Similarity=0.686 Sum_probs=270.6
Q ss_pred eEEEEEecCHHHHHHHHHHHcC---CCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEe
Q 022491 7 IKIGINGFGRIGRLVARVALQR---DDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFG 83 (296)
Q Consensus 7 i~vgI~G~G~iG~~l~r~l~~~---p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~ 83 (296)
+||||||||+|||.++|+|.++ +++++++|||. .+.++++|+|+|||+||+|+ +.++..++ .|.++|+.|.+++
T Consensus 2 ~~IaInGfGrIGR~~lr~l~e~~~~~~l~vvaind~-~~~~~~ayll~ydS~hg~~~-~~v~~~~~-~l~v~g~~i~v~~ 78 (336)
T PRK13535 2 IRVAINGFGRIGRNVLRALYESGRRAEITVVAINEL-ADAEGMAHLLKYDTSHGRFA-WDVRQERD-QLFVGDDAIRLLH 78 (336)
T ss_pred eEEEEECcCHHHHHHHHHHHhcCCCCceEEEEecCC-CCHHHHHHHhhhccCCCCCC-CcEEecCC-EEEECCEEEEEEE
Confidence 7999999999999999999874 57999999997 78999999999999999999 77765444 6999999999999
Q ss_pred cCCCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCCCC-C-CCeEEcccChhccCCCCCeEEcCCcchhh
Q 022491 84 FRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSK-D-APMFVVGVNEKEYKPELDIVSNASCTTNC 161 (296)
Q Consensus 84 ~~d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~~~-d-~~~~v~gvn~~~l~~~~~iIs~p~C~~ta 161 (296)
+++|++++|...++|+||||||.+.++++++.|+++|+|+|++|+++. | .+++|||+|++.|++..+|||||+|+|+|
T Consensus 79 ~~~p~~~~w~~~gvDiVle~tG~~~s~~~a~~~l~aGAk~V~iSap~~~d~~~~vV~gVN~~~~~~~~~IISnasCTTn~ 158 (336)
T PRK13535 79 ERDIASLPWRELGVDVVLDCTGVYGSREDGEAHIAAGAKKVLFSHPGSNDLDATVVYGVNHDQLRAEHRIVSNASCTTNC 158 (336)
T ss_pred cCCcccCcccccCCCEEEEccchhhhHHHHHHHHHcCCEEEEecCCcccCCCCeEEeCcCHHHhCcCCCEEECCchHHHH
Confidence 999999999888999999999999999999999999999999999975 4 45899999999998657899999999999
Q ss_pred hHhHHHHHHhhcCeeEEEEEEEeecCCcccccCCCCCccccCcccccceeeeccCChhhHHHHhccccCCceeEEEEEee
Q 022491 162 LAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVP 241 (296)
Q Consensus 162 l~~~l~~L~~~~gi~~~~~~~v~a~sg~~~~~d~~~~~~~~~~r~~~~ni~P~~~g~~~~~~~~~pel~~~v~~~~~~VP 241 (296)
++|+++||+++|||+++.|||+|++|..|+++|+++ +++|++|.+++|++|+.++.+++..+++|+++++++++++|||
T Consensus 159 Lap~lk~L~~~fgI~~~~mTT~ha~t~~Q~~vD~~~-~d~rr~r~~a~NiIP~~tgaa~a~~kilP~l~gkv~~~avRVP 237 (336)
T PRK13535 159 IIPVIKLLDDAFGIESGTVTTIHSAMNDQQVIDAYH-PDLRRTRAASQSIIPVDTKLAAGITRIFPQFNDRFEAISVRVP 237 (336)
T ss_pred HHHHHHHHHHhcCeeEEEEEEEEhhcCCcchhhchh-hccccccEeeeccccCccHHHhhhhhcccCCCCcEEEEEEEeC
Confidence 999999999999999999999999999999999987 6999999999999999999999999999999999999999999
Q ss_pred eCceEEEEEEEEeecCCCHHHHHHHHHHhhcCcCCCcccccCCceeeecCCCCCC
Q 022491 242 TVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSR 296 (296)
Q Consensus 242 ~~~g~~~~~~~~l~~~~~~~ev~~~~~~~~~~~~~~~~~~~~~~~vs~d~~~~~~ 296 (296)
+++||+.+++++++++++.||++++|+++++++|||||+|+++|+||+||+|+||
T Consensus 238 v~~gs~~dl~v~~~~~~t~eei~~~l~~a~~~~l~gil~~~~~~~VS~D~~~~~~ 292 (336)
T PRK13535 238 TINVTAIDLSVTVKKPVKVNEVNQLLQKAAQGAFHGIVDYTELPLVSIDFNHDPH 292 (336)
T ss_pred ccCcEEEEEEEEECCCCCHHHHHHHHHHhhhccccccccccCCCccccccCCCCc
Confidence 9999999999999999999999999999999999999999999999999999997
No 14
>COG0057 GapA Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.5e-71 Score=497.40 Aligned_cols=287 Identities=62% Similarity=0.947 Sum_probs=275.0
Q ss_pred eeEEEEEecCHHHHHHHHHHHcCC-CcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEec
Q 022491 6 KIKIGINGFGRIGRLVARVALQRD-DVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGF 84 (296)
Q Consensus 6 ~i~vgI~G~G~iG~~l~r~l~~~p-~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~ 84 (296)
++||||||||+|||.++|++.+++ ++|+|+||+. .+++++||+++||++||+|. +.+...++ .+.++++.|+++..
T Consensus 1 ~ikV~INGfGrIGR~v~ra~~~~~~dieVVaInd~-t~~~~~A~LlkyDs~hg~f~-~~v~~~~~-~~~v~g~~I~v~~~ 77 (335)
T COG0057 1 MIKVAINGFGRIGRLVARAALERDGDIEVVAINDL-TDPDYLAHLLKYDSVHGRFD-GEVEVKDD-ALVVNGKGIKVLAE 77 (335)
T ss_pred CcEEEEecCcHHHHHHHHHHHhCCCCeEEEEEecC-CCHHHHHHHHhhcccCCCCC-CcccccCC-eEEECCceEEEEec
Confidence 389999999999999999999998 7999999997 78999999999999999999 77664444 59999999999999
Q ss_pred CCCCCCCcccCCCcEEEEccCCccCHHHHHHHHHC-CCCeEEeeCCCCC-CCeEEcccChhccCCCCCeEEcCCcchhhh
Q 022491 85 RNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKG-GAKKVVISAPSKD-APMFVVGVNEKEYKPELDIVSNASCTTNCL 162 (296)
Q Consensus 85 ~d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~-G~k~vvid~~~~d-~~~~v~gvn~~~l~~~~~iIs~p~C~~tal 162 (296)
.+|+.++|.+.++|+|+||||.|.+++.+++|+++ |+|+|++++++.+ ++++|||+|++.++.++++|||.|||||||
T Consensus 78 ~~p~~l~w~d~gvdiVve~Tg~f~~~e~~~~hl~agGaKkV~isap~~~~~~~vv~gvn~~~~~~~~~iVsnaSCTTNcL 157 (335)
T COG0057 78 RDPANLPWADLGVDIVVECTGKFTGREKAEKHLKAGGAKKVLISAPGKDDVATVVYGVNHNYYDAGHTIVSNASCTTNCL 157 (335)
T ss_pred CChHHCCccccCccEEEECCCCccchhhHHHHHHhcCCCEEEEcCCCCCCccEEEEeccccccCCCCcEEEEccchhhhh
Confidence 99999999999999999999999999999999988 5999999999987 999999999999987789999999999999
Q ss_pred HhHHHHHHhhcCeeEEEEEEEeecCCcccccCCCCCccccCcccccceeeeccCChhhHHHHhccccCCceeEEEEEeee
Q 022491 163 APLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPT 242 (296)
Q Consensus 163 ~~~l~~L~~~~gi~~~~~~~v~a~sg~~~~~d~~~~~~~~~~r~~~~ni~P~~~g~~~~~~~~~pel~~~v~~~~~~VP~ 242 (296)
+|++++|+++|||+++.|||+|++|++|+.+|++| +++|++|+++.|++|..+|+++++.+++|||+|+++++++|||+
T Consensus 158 ap~~kvl~d~fGI~~g~mTtVh~~T~dQ~~~dgph-~~~rr~raa~~niIp~sTgaAkav~~VlP~L~gKl~g~A~RVPt 236 (335)
T COG0057 158 APVAKVLNDAFGIEKGLMTTVHAYTNDQKLVDGPH-KDLRRARAAALNIIPTSTGAAKAVGLVLPELKGKLTGMAIRVPT 236 (335)
T ss_pred HHHHHHHHHhcCeeEEEEEEEEcccCCCccccCcc-cchhhhccccCCCCcCCCcchhhhhhhCcccCCceeeEEEEecC
Confidence 99999999999999999999999999999999999 58999999999999999999999999999999999999999999
Q ss_pred CceEEEEEEEEeecCCCHHHHHHHHHHhhcCcCCCcccccCCceeeecCCCCCC
Q 022491 243 VDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSR 296 (296)
Q Consensus 243 ~~g~~~~~~~~l~~~~~~~ev~~~~~~~~~~~~~~~~~~~~~~~vs~d~~~~~~ 296 (296)
+.+|+.++++++++++|.|||+++|++++++.+||+++|+|+|+||+||+|+||
T Consensus 237 ~~vs~~dl~v~l~k~~t~eeIn~alk~as~~~lkg~~~y~e~~~Vs~D~~~~~~ 290 (335)
T COG0057 237 PNVSVVDLTVELEKEVTVEEINAALKAASEIGLKGILGYTEDPLVSSDFNGDPH 290 (335)
T ss_pred CCcEEEEEEEEeCCCCCHHHHHHHHHHhhcccccceeeeEeccccccccCCCcc
Confidence 999999999999999999999999999999999999999999999999999986
No 15
>PRK08289 glyceraldehyde-3-phosphate dehydrogenase; Reviewed
Probab=100.00 E-value=1.4e-69 Score=505.25 Aligned_cols=288 Identities=39% Similarity=0.621 Sum_probs=270.5
Q ss_pred eEEEEEecCHHHHHHHHHHHcC----CCcEEEEEecC---CCChhhhhhcccccccCCCCcCcceeeeC-CceeEECCEE
Q 022491 7 IKIGINGFGRIGRLVARVALQR----DDVELVAVNDP---FISTDYMTYMFKYDSVHGQWKHNELKVKD-EKTLLFGEKP 78 (296)
Q Consensus 7 i~vgI~G~G~iG~~l~r~l~~~----p~~elv~i~~~---~~~~~~~a~~l~~~s~~~~~~~~~v~~~~-~~~l~~~~~~ 78 (296)
.||||||||||||.++|++.++ +++++++|+++ ..+++++||+|+|||+||+|+ +.+...+ +..|.+||+.
T Consensus 128 ~~V~InGFGRIGR~v~R~~~~~~~~~~~l~lvAIn~~~nd~~d~~~~ayLLkyDSvhG~f~-~~v~~~~~~~~liing~~ 206 (477)
T PRK08289 128 RDVVLYGFGRIGRLLARLLIEKTGGGNGLRLRAIVVRKGSEGDLEKRASLLRRDSVHGPFN-GTITVDEENNAIIANGNY 206 (477)
T ss_pred ceEEEECCCHHHHHHHHHHHhccCCCCCeEEEEEecCCCCCCCHHHHHHHhhhhcCCCCCC-CceEeecCCCEEEECCEE
Confidence 6999999999999999998876 58999999631 257789999999999999999 8877652 3369999999
Q ss_pred EEEEecCCCCCCCcccCCCc--EEEEccCCccCHHHHHHHHH-CCCCeEEeeCCCCC-CCeEEcccChhccCCCCCeEEc
Q 022491 79 VAVFGFRNPEEIPWAKTGAE--YVVESTGVFTDKDKAAAHLK-GGAKKVVISAPSKD-APMFVVGVNEKEYKPELDIVSN 154 (296)
Q Consensus 79 i~~~~~~d~~~i~~~~~~~D--vV~~at~~~~~~~~~~~~l~-~G~k~vvid~~~~d-~~~~v~gvn~~~l~~~~~iIs~ 154 (296)
|+++.+.+|+++||.+.++| +|+||||.|...+.+.+|++ +|+|||++++|+++ +|++|||+|++.+++..+||||
T Consensus 207 I~v~~~~dP~~i~W~~~Gvd~aiVID~TG~f~~~~~~~~HL~~~GakkViiSAP~k~d~p~iV~GVN~~~~~~~~~IISn 286 (477)
T PRK08289 207 IQVIYANSPEEVDYTAYGINNALVVDNTGKWRDEEGLSQHLKSKGVAKVLLTAPGKGDIKNIVHGVNHSDITDEDKIVSA 286 (477)
T ss_pred EEEEecCChHHCCchhcCCCeEEEEeCccccCCHHHHhhchhccCCCEEEECCCCCCCCCeEEcccCHHHhCCCCCEEEC
Confidence 99999999999999999999 99999999999999999999 89999999999886 7999999999999755789999
Q ss_pred CCcchhhhHhHHHHHHhhcCeeEEEEEEEeecCCcccccCCCCCccccCcccccceeeeccCChhhHHHHhccccCCcee
Q 022491 155 ASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLT 234 (296)
Q Consensus 155 p~C~~tal~~~l~~L~~~~gi~~~~~~~v~a~sg~~~~~d~~~~~~~~~~r~~~~ni~P~~~g~~~~~~~~~pel~~~v~ 234 (296)
|||+|+|++|++++|++.|||+++.|||+|++|+.|+++|+++ +++|++|++++|++|+.+|+++++.+++|+|+|+++
T Consensus 287 ASCTTN~LaPvlKvL~d~fGI~~g~mTTvHa~T~dQ~lvD~~h-kd~RrgRaaa~NIIptsTGAAkAv~kVLP~L~GKlt 365 (477)
T PRK08289 287 ASCTTNAITPVLKAVNDKYGIVNGHVETVHSYTNDQNLIDNYH-KGDRRGRSAPLNMVITETGAAKAVAKALPELAGKLT 365 (477)
T ss_pred CccHHHHHHHHHHHHHHhcCeeEEEEEEEecccCChHHhhhhh-hcCcccceeeeeeEecCCChhhhhhhcccccCCcEE
Confidence 9999999999999999999999999999999999999999998 589999999999999999999999999999999999
Q ss_pred EEEEEeeeCceEEEEEEEEeecCCCHHHHHHHHHHhh-cCcCCCcccccCC-ceeeecCCCCCC
Q 022491 235 GMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEES-EGKLKGILGYTEE-DVVSTDFVGDSR 296 (296)
Q Consensus 235 ~~~~~VP~~~g~~~~~~~~l~~~~~~~ev~~~~~~~~-~~~~~~~~~~~~~-~~vs~d~~~~~~ 296 (296)
++++||||++|++++++++++++++.||++++|++++ +++|+|+++|+++ |+||+||+|+||
T Consensus 366 g~avRVPt~nvS~vdLtv~l~k~vt~eevn~~lk~aa~~~~L~gil~yt~~~~lVSsDfig~~~ 429 (477)
T PRK08289 366 GNAIRVPTPNVSMAILNLNLEKETSREELNEYLRQMSLHSPLQNQIDYTDSTEVVSSDFVGSRH 429 (477)
T ss_pred EEEEEeccccEEEEEEEEEECCCCCHHHHHHHHHHHhhcCCccceeeecccCCeeeeeecCCCc
Confidence 9999999999999999999999999999999999999 4899999999999 799999999986
No 16
>TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase. Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species.
Probab=100.00 E-value=4.4e-69 Score=492.44 Aligned_cols=285 Identities=38% Similarity=0.697 Sum_probs=267.8
Q ss_pred EEEEEecCHHHHHHHHHHHcCC---CcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEec
Q 022491 8 KIGINGFGRIGRLVARVALQRD---DVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGF 84 (296)
Q Consensus 8 ~vgI~G~G~iG~~l~r~l~~~p---~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~ 84 (296)
||||||||+|||.++|+|.+++ ++++++|++. .+.++++|+++|||+|++|+ +.+...++ .|.++|+.|.++++
T Consensus 1 ~IaInGfGrIGR~vlr~l~e~~~~~~~~vvaInd~-~~~~~~ayll~yDS~hg~~~-~~v~~~~~-~l~v~g~~i~v~~~ 77 (325)
T TIGR01532 1 RVAINGFGRIGRNVLRALYESGERLGIEVVALNEL-ADQASMAHLLRYDTSHGRFP-GEVKVDGD-CLHVNGDCIRVLHS 77 (325)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCCeEEEEEecC-CCHHHHHHHHhhCccCCCCC-CcEEEeCC-EEEECCeEEEEEEc
Confidence 6999999999999999998764 6999999996 67899999999999999998 77765444 69999999999999
Q ss_pred CCCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCCCC-C-CCeEEcccChhccCCCCCeEEcCCcchhhh
Q 022491 85 RNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSK-D-APMFVVGVNEKEYKPELDIVSNASCTTNCL 162 (296)
Q Consensus 85 ~d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~~~-d-~~~~v~gvn~~~l~~~~~iIs~p~C~~tal 162 (296)
.+|++++|...++|+||+|||.+.+++++++|+++|++++++++++. + ..++|||+|++.+++..+|||||+|+|+||
T Consensus 78 ~~p~~~~w~~~gvDiVie~tG~~~s~e~a~~~l~aGa~~V~~SaP~~~d~~~~vV~gVN~~~~~~~~~IISnasCtTn~l 157 (325)
T TIGR01532 78 PTPEALPWRALGVDLVLDCTGVYGNREQGERHIRAGAKRVLFSHPGASDLDATIVYGVNQQDLSAEHTIVSNASCTTNCI 157 (325)
T ss_pred CChhhccccccCCCEEEEccchhccHHHHHHHHHcCCeEEEecCCCcCCCCceEEeccCHHHhCCCCCEEeCCCcHHHHH
Confidence 99999999888999999999999999999999999999999998865 3 358999999999985578999999999999
Q ss_pred HhHHHHHHhhcCeeEEEEEEEeecCCcccccCCCCCccccCcccccceeeeccCChhhHHHHhccccCCceeEEEEEeee
Q 022491 163 APLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPT 242 (296)
Q Consensus 163 ~~~l~~L~~~~gi~~~~~~~v~a~sg~~~~~d~~~~~~~~~~r~~~~ni~P~~~g~~~~~~~~~pel~~~v~~~~~~VP~ 242 (296)
+|+++||++.|||+++.|||+|++|+.|+++|+++ +++|++|.+.+|++|+.++..+++.+++|+|+++++++++|||+
T Consensus 158 ap~lk~L~~~fgI~~~~~tTvha~t~~q~~vD~~~-~d~r~~r~a~~NiIP~~t~~a~a~~kilP~L~gkl~~~avRVPv 236 (325)
T TIGR01532 158 VPLIKLLDDAIGIESGTITTIHSAMNDQQVIDAYH-HDLRRTRAASQSIIPVDTKLARGIERLFPEFAGRFEAIAVRVPT 236 (325)
T ss_pred HHHHHHHHHhcCeeEEEEEEEEhhcCCccccccch-hhccccchHhhCeeeCCccHHHHHHHhCcccCCeEEEEEEEecc
Confidence 99999999999999999999999999999999997 69999998888999999999999999999999999999999999
Q ss_pred CceEEEEEEEEeecCCCHHHHHHHHHHhhcCcCCCcccccCCceeeecCCCCCC
Q 022491 243 VDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSR 296 (296)
Q Consensus 243 ~~g~~~~~~~~l~~~~~~~ev~~~~~~~~~~~~~~~~~~~~~~~vs~d~~~~~~ 296 (296)
++||+.+++++++++++.||++++|+++++++|||||+|+++|+||+||+||||
T Consensus 237 ~~~s~~dl~v~~~~~~~~eev~~~l~~a~~~~l~gil~~~~~~~vS~D~~~~~~ 290 (325)
T TIGR01532 237 VNVTALDLSVTTKRDVKANEVNRVLREAAQGPLRGIVDYTELPLVSCDFNHDPH 290 (325)
T ss_pred cCcEEEEEEEEECCCCCHHHHHHHHHHhhccccccccccccCCccccccCCCCc
Confidence 999999999999999999999999999999999999999999999999999996
No 17
>KOG0657 consensus Glyceraldehyde 3-phosphate dehydrogenase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.4e-50 Score=350.80 Aligned_cols=256 Identities=65% Similarity=1.045 Sum_probs=243.7
Q ss_pred CCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEecCCCCCCCcccCCCcEEEEccCCc
Q 022491 28 RDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVF 107 (296)
Q Consensus 28 ~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~~d~~~i~~~~~~~DvV~~at~~~ 107 (296)
..+++++++|+++.+.++++|+++||++||+|+ +.++.+++ .+.++|..|.++++++|..++|...+.|+|+++|+.|
T Consensus 8 ~~~v~vv~indpfi~~~~~~y~~kydsthG~f~-g~~k~~~~-~~i~~G~~i~~~~~~~p~~i~w~~~g~~~v~e~tg~f 85 (285)
T KOG0657|consen 8 RNSVDVVAINDPFIDLNYLAYMLKYDSTHGKFH-GTVKAENF-KLIINGNPITIFQFRDPAKIPWGAKGADIVVESTGVF 85 (285)
T ss_pred cCCcccccccCcccccccccccccccccCCccc-cceeecCC-ceeecCceEEeecccCcccCccccccceeEeeccccc
Confidence 455999999999889999999999999999999 88887776 4677899999999999999999999999999999999
Q ss_pred cCHHHHHHHHHCCCCeEEeeCCCCCCCeEEcccChhccCCCCCeEEcCCcchhhhHhHHHHHHhhcCeeEEEEEEEeecC
Q 022491 108 TDKDKAAAHLKGGAKKVVISAPSKDAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSIT 187 (296)
Q Consensus 108 ~~~~~~~~~l~~G~k~vvid~~~~d~~~~v~gvn~~~l~~~~~iIs~p~C~~tal~~~l~~L~~~~gi~~~~~~~v~a~s 187 (296)
++.+.+..|+++|+|+++|++++.|.|++|+|+|.++++++..+|||.+|+++|++|..+.++++|||.+++|||+|+++
T Consensus 86 ~t~e~~~~~~~~gakkviisaps~dapmfv~gVn~~~y~~~~~iiSnascttnclaPlaKVi~d~fgI~EgLMtTvha~t 165 (285)
T KOG0657|consen 86 TTMEKPGKHFQGGAKKVIISAPSADAPMFVMGVNGEKYDNSLDIISNASCTTNCLAPLAKVIHDNFGIMEGLMTTVHAIT 165 (285)
T ss_pred cccccccccccccceEEEeccccCCCCcccccccccccccccceeechhhhhccccchhheeccccccccccccceeeec
Confidence 99999999999999999999999999999999999999876669999999999999999999999999999999999999
Q ss_pred CcccccCCCCCccccCcccccceeeeccCChhhHHHHhccccCCceeEEEEEeeeCceEEEEEEEEeecCCCHHHHHHHH
Q 022491 188 ATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAI 267 (296)
Q Consensus 188 g~~~~~d~~~~~~~~~~r~~~~ni~P~~~g~~~~~~~~~pel~~~v~~~~~~VP~~~g~~~~~~~~l~~~~~~~ev~~~~ 267 (296)
.+|+.+|++++++||.||.+.+|++|..+|+++++.+++|||+|++++++||||+. ....+++++++++.+.|++++++
T Consensus 166 atQktvdgps~k~wr~g~~a~qNIiPASTgAakAVgKvipeLngKLtGMAf~Vpt~-vsVvdl~~~~~k~a~~ddikkvv 244 (285)
T KOG0657|consen 166 ATQKTVDGPSGKLWRDGRRALQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTP-VSVVDLTCHLEKPAKYDDIKKVV 244 (285)
T ss_pred cccccccCcccccccccchhhhccccccccHHHHHHHHhHHhhCccccceecCCcc-eEeeeeecccccccchHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999 99999999999999999999999
Q ss_pred HHhhcCcCCCcccccCCceee
Q 022491 268 KEESEGKLKGILGYTEEDVVS 288 (296)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~vs 288 (296)
+++.+++||||| +|+.++|
T Consensus 245 k~~~~~~lkGIL--te~~fIS 263 (285)
T KOG0657|consen 245 KLASEIPLKGIL--TEHHFIS 263 (285)
T ss_pred HHhhcccccccc--cccceee
Confidence 999999999999 8887655
No 18
>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II. All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's.
Probab=100.00 E-value=2e-41 Score=309.51 Aligned_cols=234 Identities=24% Similarity=0.322 Sum_probs=199.5
Q ss_pred EEEEecCHHHHHHHHHHHcCCCcEEEEEecCCCChh---hhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEecC
Q 022491 9 IGINGFGRIGRLVARVALQRDDVELVAVNDPFISTD---YMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFR 85 (296)
Q Consensus 9 vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~~~~~~---~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~~ 85 (296)
|||||||+||+.++|.+.++|++|+++|+|. +++ .++++++|+++|+ +....+..+++ .+.+++
T Consensus 1 VaInG~GrIGr~varav~~~~d~elVaVnD~--~~~~~a~lA~~lgyds~~~-~~~~~~~~~~~-~l~v~g--------- 67 (333)
T TIGR01546 1 VGVNGYGTIGKRVADAVTKQDDMKLVGVTKT--SPDFEAYRAKELGIPVYAA-SEEFIPRFEEA-GIEVAG--------- 67 (333)
T ss_pred CEEECCcHHHHHHHHHHhhCCCcEEEEEecC--ChHHHHHHHHHhCCCEEee-cCCcceEeccC-ceEecC---------
Confidence 6999999999999999998899999999995 444 7778888999883 43122322221 232222
Q ss_pred CCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCCCCC--CCeEEcccChhccCCCCCeEEcCCcchhhhH
Q 022491 86 NPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKD--APMFVVGVNEKEYKPELDIVSNASCTTNCLA 163 (296)
Q Consensus 86 d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~~~d--~~~~v~gvn~~~l~~~~~iIs~p~C~~tal~ 163 (296)
+++++. .++|+|++|||.+.+....+.|++.|+|++++++++++ +++||||+|.+.+. +.++|+|.||+||||+
T Consensus 68 ~~eeLl---~~vDiVve~Tp~~~~~~na~~~~~~GakaVl~~~p~~~~~~~tfv~gvN~~~~~-~~~~vs~aSCtTn~La 143 (333)
T TIGR01546 68 TLEDLL---EKVDIVVDATPGGIGAKNKPLYEKAGVKAIFQGGEKAEVADVSFVAQANYEAAL-GKDYVRVVSCNTTGLV 143 (333)
T ss_pred CHHHHh---hcCCEEEECCCCCCChhhHHHHHhCCcCEEEECCCCCCCCCceEEeeeCHHHcC-cCceEEecCchHhhHH
Confidence 456662 57999999999999999999999999999999999886 57899999999987 5569999999999999
Q ss_pred hHHHHHHhhcCeeEEEEEEEeecCCcccccCCCCCccccCcccccceeeec-cC---ChhhHHHHhccccCCceeEEEEE
Q 022491 164 PLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPS-ST---GAAKAVGKVLPALNGKLTGMSFR 239 (296)
Q Consensus 164 ~~l~~L~~~~gi~~~~~~~v~a~sg~~~~~d~~~~~~~~~~r~~~~ni~P~-~~---g~~~~~~~~~pel~~~v~~~~~~ 239 (296)
|++++|++.|||+++.+|++|+ +++|+ ++|+|| ++||+|. .+ .+.+.+.+++|+|+ +.+.++|
T Consensus 144 p~~~~L~~~fGI~~~~~Ttvh~-t~dq~--------d~rrgr--~~~IiP~~~t~ps~~a~av~~VlP~L~--i~g~Avr 210 (333)
T TIGR01546 144 RTLNAINDYSKVDKVRAVMVRR-AADPN--------DVKKGP--INAIVPDPVTVPSHHGPDVQTVIPNLN--IETMAFV 210 (333)
T ss_pred HHHHHHHHhcCeEEEEEEEEee-cCChh--------hhccCc--hhceEeCCCCCCCchHHHHHHcCCCCC--ccEEEEE
Confidence 9999999999999999999997 77763 677788 5899998 33 56899999999998 9999999
Q ss_pred eeeCceEEEEEEEEeecCCCHHHHHHHHHHhhc
Q 022491 240 VPTVDVSVVDLTVRLEKEATYEEIKNAIKEESE 272 (296)
Q Consensus 240 VP~~~g~~~~~~~~l~~~~~~~ev~~~~~~~~~ 272 (296)
||++.+|+++++++++++++.|||+++|+++.+
T Consensus 211 VPt~~vs~~dl~v~l~~~~t~eeV~~~l~~~~r 243 (333)
T TIGR01546 211 VPTTLMHVHSIMVELKKPVTKDDIIDILENTPR 243 (333)
T ss_pred eCCCCcEEEEEEEEECCCCCHHHHHHHHHhCCc
Confidence 999999999999999999999999999999875
No 19
>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional
Probab=100.00 E-value=1.6e-40 Score=307.52 Aligned_cols=229 Identities=24% Similarity=0.356 Sum_probs=187.5
Q ss_pred eEEEEEec-CHHHHHHHHHHHc--CCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEe
Q 022491 7 IKIGINGF-GRIGRLVARVALQ--RDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFG 83 (296)
Q Consensus 7 i~vgI~G~-G~iG~~l~r~l~~--~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~ 83 (296)
+||+|+|+ |++|++|+|+|.+ ||.++++++.+. .+.+. . +.+++..+.+.
T Consensus 2 ~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~-~~~g~---~----------------------l~~~g~~i~v~- 54 (334)
T PRK14874 2 YNVAVVGATGAVGREMLNILEERNFPVDKLRLLASA-RSAGK---E----------------------LSFKGKELKVE- 54 (334)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEEcc-ccCCC---e----------------------eeeCCceeEEe-
Confidence 79999999 9999999999998 799999999765 33221 1 11222223332
Q ss_pred cCCCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCCCC-----CCCeEEcccChhccCCC--CCeEEcCC
Q 022491 84 FRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSK-----DAPMFVVGVNEKEYKPE--LDIVSNAS 156 (296)
Q Consensus 84 ~~d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~~~-----d~~~~v~gvn~~~l~~~--~~iIs~p~ 156 (296)
+++..+| .++|+||+|+|++.+++++++++++|+ +|||+|++ +.|..+||+|++.++.. .++|||||
T Consensus 55 --d~~~~~~--~~vDvVf~A~g~g~s~~~~~~~~~~G~--~VIDlS~~~R~~~~~p~~lpevn~~~i~~~~~~~iVanp~ 128 (334)
T PRK14874 55 --DLTTFDF--SGVDIALFSAGGSVSKKYAPKAAAAGA--VVIDNSSAFRMDPDVPLVVPEVNPEALAEHRKKGIIANPN 128 (334)
T ss_pred --eCCHHHH--cCCCEEEECCChHHHHHHHHHHHhCCC--EEEECCchhhcCCCCCeEcCCcCHHHHhhhhcCCeEECcc
Confidence 3444456 489999999999999999999999999 89999886 37899999999999742 37999999
Q ss_pred cchhhhHhHHHHHHhhcCeeEEEEEEEeecCCcccc------------cCCCC--CccccCcccccceeeecc-----CC
Q 022491 157 CTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKT------------VDGPS--MKDWRGGRAASFNIIPSS-----TG 217 (296)
Q Consensus 157 C~~tal~~~l~~L~~~~gi~~~~~~~v~a~sg~~~~------------~d~~~--~~~~~~~r~~~~ni~P~~-----~g 217 (296)
||+||++|+|+||++.|+|++..++++|++||+|+. +|.++ .++.+++|++++|++|+. +|
T Consensus 129 C~~t~~~l~l~pL~~~~~i~~i~vtt~~~~SGaG~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~niip~~~~~~~~g 208 (334)
T PRK14874 129 CSTIQMVVALKPLHDAAGIKRVVVSTYQAVSGAGKAGMEELFEQTRAVLNAAVDPVEPKKFPKPIAFNVIPHIDVFMDDG 208 (334)
T ss_pred HHHHHHHHHHHHHHHhcCceEEEEEEEechhhCChhhHHHHHHHHHHHHhhccCCCCccccCccccCcccCcCCccccCC
Confidence 999999999999999999999999999999997632 33221 246678999999999997 67
Q ss_pred hhhHH-------HHhc--cccCCceeEEEEEeeeCceEEEEEEEEeecCCCHHHHHHHHHHh
Q 022491 218 AAKAV-------GKVL--PALNGKLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEE 270 (296)
Q Consensus 218 ~~~~~-------~~~~--pel~~~v~~~~~~VP~~~g~~~~~~~~l~~~~~~~ev~~~~~~~ 270 (296)
|.+|+ .+++ |++ ++.++|+|||++|||+.++|++++++++.+|++++|+++
T Consensus 209 h~~eE~ki~~el~~il~~~~~--~v~~t~~rvPv~~G~~~ti~v~~~~~~~~~~v~~~l~~~ 268 (334)
T PRK14874 209 YTKEEMKMVNETKKILGDPDL--KVSATCVRVPVFTGHSESVNIEFEEPISVEEAREILAEA 268 (334)
T ss_pred CcHHHHHHHHHHHHHhCCCCC--eEEEEEEEcceeccEEEEEEEEECCCCCHHHHHHHHHcC
Confidence 87773 3454 555 499999999999999999999999999999999999984
No 20
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=100.00 E-value=3.1e-39 Score=299.20 Aligned_cols=251 Identities=28% Similarity=0.347 Sum_probs=191.9
Q ss_pred eeEEEEEecCHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhccccc--ccCCCCcCcceeeeCCceeEECCEEEEEEe
Q 022491 6 KIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYD--SVHGQWKHNELKVKDEKTLLFGEKPVAVFG 83 (296)
Q Consensus 6 ~i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~--s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~ 83 (296)
|+||||+|+|+||+.+++++.++|++||+++++. ++++.++++++. +.|+.++ .... .+++..+.+..
T Consensus 1 ~ikVaI~G~GrIGr~va~al~~~~d~eLvav~d~--~~~~~~~la~~~G~~~~~~~~-~~~~-------~~~~~~i~V~~ 70 (341)
T PRK04207 1 MIKVGVNGYGTIGKRVADAVAAQPDMELVGVAKT--KPDYEARVAVEKGYPLYVADP-EREK-------AFEEAGIPVAG 70 (341)
T ss_pred CeEEEEECCCHHHHHHHHHHhcCCCcEEEEEECC--ChHHHHHHHHhcCCCccccCc-cccc-------cccCCceEEcC
Confidence 3899999999999999999999999999999986 355555554421 2344443 2111 01222233322
Q ss_pred cCCCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCCCC-CC--CeEEcccChhccCCCCCeEEcCCcchh
Q 022491 84 FRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSK-DA--PMFVVGVNEKEYKPELDIVSNASCTTN 160 (296)
Q Consensus 84 ~~d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~~~-d~--~~~v~gvn~~~l~~~~~iIs~p~C~~t 160 (296)
+++++ ..++|+||+|||.+.+.+.++.++++|+ ++|+++++. ++ ..+|||+|++.+. +.++|+||||+||
T Consensus 71 --~~~el---~~~vDVVIdaT~~~~~~e~a~~~~~aGk-~VI~~~~~~~~~~~~~~v~~vN~~~~~-~~~~v~~~sCtT~ 143 (341)
T PRK04207 71 --TIEDL---LEKADIVVDATPGGVGAKNKELYEKAGV-KAIFQGGEKAEVAGVSFNALANYEEAL-GKDYVRVVSCNTT 143 (341)
T ss_pred --ChhHh---hccCCEEEECCCchhhHHHHHHHHHCCC-EEEEcCCCCCCCCCCcEEeeECHHHhC-CCCcEEccChHHH
Confidence 34444 2479999999999999999999999995 455555543 33 3489999999887 4558999999999
Q ss_pred hhHhHHHHHHhhcCeeEEEEEEEeecCCcccccCCCCCccccCcccccceeeecc----CChhhHHHHhccccCCceeEE
Q 022491 161 CLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSS----TGAAKAVGKVLPALNGKLTGM 236 (296)
Q Consensus 161 al~~~l~~L~~~~gi~~~~~~~v~a~sg~~~~~d~~~~~~~~~~r~~~~ni~P~~----~g~~~~~~~~~pel~~~v~~~ 236 (296)
|++|+|+||++.|||+++.+||+|++|+ + .++ .|.+..|++|.. +.+.+++.+++|+++ ++++
T Consensus 144 ~l~~~l~~L~~~fgI~~~~vTtv~a~td-------~--~~~--~r~~~~niip~p~~~~~~~g~~v~~vlp~l~--i~~~ 210 (341)
T PRK04207 144 GLCRTLCALDRAFGVKKVRATLVRRAAD-------P--KEV--KRGPINAIVPDPVTVPSHHGPDVKTVLPDLD--ITTM 210 (341)
T ss_pred HHHHHHHHHHHhcCceEEEEEEEEcCCC-------c--chh--hHHHhcCcCCCCCCCCCCchhHHHhhCCCCc--eEEE
Confidence 9999999999999999999999999874 1 233 266778888752 233578899999997 9999
Q ss_pred EEEeeeCceEEEEEEEEeecCCCHHHHHHHHHHhhcC----cCCCcccccCCcee
Q 022491 237 SFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEG----KLKGILGYTEEDVV 287 (296)
Q Consensus 237 ~~~VP~~~g~~~~~~~~l~~~~~~~ev~~~~~~~~~~----~~~~~~~~~~~~~v 287 (296)
|+|||+++||+.+++++++++++.||++++|+++.+- +-.|+.. +++++.
T Consensus 211 avrVPv~~gh~~~v~v~l~~~~t~eev~~~l~~~~~i~~~~~~~~~~s-~~~~~~ 264 (341)
T PRK04207 211 AVKVPTTLMHMHSVNVELKKPVTKEEVLEALENTPRILLVRASDGIDS-TAELIE 264 (341)
T ss_pred EEEcCCCCceEEEEEEEECCCCCHHHHHHHHHhCCCCEeeccccCCCC-hHHHhH
Confidence 9999999999999999999999999999999998763 2245555 544443
No 21
>PRK08040 putative semialdehyde dehydrogenase; Provisional
Probab=100.00 E-value=7.4e-39 Score=294.44 Aligned_cols=235 Identities=23% Similarity=0.280 Sum_probs=184.4
Q ss_pred CCCCCeeEEEEEec-CHHHHHHHHHHHc--CCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCE
Q 022491 1 MAGDKKIKIGINGF-GRIGRLVARVALQ--RDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEK 77 (296)
Q Consensus 1 m~~~m~i~vgI~G~-G~iG~~l~r~l~~--~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~ 77 (296)
|.+ ++||||+|+ |++|++++|+|.+ ||.+++..+++. .+.+. . +.++++
T Consensus 1 ~~~--~~~vaIvGATG~vG~ellrlL~~~~hP~~~l~~laS~-~saG~---~----------------------~~~~~~ 52 (336)
T PRK08040 1 MSE--GWNIALLGATGAVGEALLELLAERQFPVGELYALASE-ESAGE---T----------------------LRFGGK 52 (336)
T ss_pred CCC--CCEEEEEccCCHHHHHHHHHHhcCCCCceEEEEEEcc-CcCCc---e----------------------EEECCc
Confidence 543 489999999 9999999999999 899999999876 33321 1 222222
Q ss_pred EEEEEecCCCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCCCC-----CCCeEEcccCh---hccCCCC
Q 022491 78 PVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSK-----DAPMFVVGVNE---KEYKPEL 149 (296)
Q Consensus 78 ~i~~~~~~d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~~~-----d~~~~v~gvn~---~~l~~~~ 149 (296)
.+.+. ++++++| .++|+||+|+|+..++++++++.++|+ +|||++++ +.|..++++|+ +.++ ++
T Consensus 53 ~~~v~---~~~~~~~--~~~Dvvf~a~p~~~s~~~~~~~~~~g~--~VIDlS~~fRl~~~vP~~lPEvn~~~l~~i~-~~ 124 (336)
T PRK08040 53 SVTVQ---DAAEFDW--SQAQLAFFVAGREASAAYAEEATNAGC--LVIDSSGLFALEPDVPLVVPEVNPFVLADYR-NR 124 (336)
T ss_pred ceEEE---eCchhhc--cCCCEEEECCCHHHHHHHHHHHHHCCC--EEEECChHhcCCCCCceEccccCHHHHhhhc-cC
Confidence 23332 3556666 489999999999999999999999999 89999986 48899999999 4444 57
Q ss_pred CeEEcCCcchhhhHhHHHHHHhhcCeeEEEEEEEeecCCccc-ccCC--------CCC---ccccCcccccceeeecc--
Q 022491 150 DIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQK-TVDG--------PSM---KDWRGGRAASFNIIPSS-- 215 (296)
Q Consensus 150 ~iIs~p~C~~tal~~~l~~L~~~~gi~~~~~~~v~a~sg~~~-~~d~--------~~~---~~~~~~r~~~~ni~P~~-- 215 (296)
++|+||||++|+++++|+||++.++|++..+++++++||+|+ .++. ..+ ....+.++.++|++|+.
T Consensus 125 ~iIAnPgC~~t~~~laL~PL~~~~~i~~viV~t~qgvSGAG~~~~~~L~~qt~~~~~~~~~~~~~f~~~i~~N~~pyi~~ 204 (336)
T PRK08040 125 NIIAVADSLTSQLLTAIKPLIDQAGLSRLHVTNLLSASAHGKAAVDALAGQSAKLLNGIPIEEGFFGRQLAFNMLPLLPD 204 (336)
T ss_pred CEEECCCHHHHHHHHHHHHHHHhCCCeEEEEEeeccccccChhhHHHHHHHHHHhhcCCCcccccCchhhcCceeeccCC
Confidence 899999999999999999999999999999999999999984 2322 011 11345666899999994
Q ss_pred -------CCh-hhHHHHhccccCCceeEEEEEeeeCceEEEEEEEEeecCCCHHHHHHHHHHhh
Q 022491 216 -------TGA-AKAVGKVLPALNGKLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEES 271 (296)
Q Consensus 216 -------~g~-~~~~~~~~pel~~~v~~~~~~VP~~~g~~~~~~~~l~~~~~~~ev~~~~~~~~ 271 (296)
+.| ..|+.+++..-+-.+++||+||||+|||+.++|++++++++.++++++|++++
T Consensus 205 ~~g~~~~erh~~~Ei~kiL~~~~~~vs~t~~~vPv~rG~~~tv~v~~~~~v~~~~i~~~l~~~p 268 (336)
T PRK08040 205 SEGSVREERRLVDQVRKILQDEGLPISVSCVQSPVFYGHAQMVHFEALRPLAAEEARDALEQGE 268 (336)
T ss_pred cCCcchHhhhhHHHHHHHhCCCCCeEEEEeEEecchhcEEEEEEEEECCCCCHHHHHHHHhcCC
Confidence 223 44555555211123899999999999999999999999999999999999843
No 22
>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.
Probab=100.00 E-value=2.8e-39 Score=299.25 Aligned_cols=231 Identities=24% Similarity=0.327 Sum_probs=187.4
Q ss_pred EEEEEec-CHHHHHHHHHHHc--CCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEec
Q 022491 8 KIGINGF-GRIGRLVARVALQ--RDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGF 84 (296)
Q Consensus 8 ~vgI~G~-G~iG~~l~r~l~~--~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~ 84 (296)
||+|+|+ |++|++|+|+|.+ ||.++++.+.+. .+.+. . +.+.+..+.+ .+
T Consensus 1 ~VaIvGAtG~vG~eLi~lL~~~~hp~~~l~~~as~-~~~g~---~----------------------~~~~~~~~~~-~~ 53 (339)
T TIGR01296 1 NVAIVGATGAVGQEMLKILEERNFPIDKLVLLASD-RSAGR---K----------------------VTFKGKELEV-NE 53 (339)
T ss_pred CEEEEcCCCHHHHHHHHHHHhCCCChhhEEEEecc-ccCCC---e----------------------eeeCCeeEEE-Ee
Confidence 6899999 9999999999998 899999888665 33221 1 1111222222 21
Q ss_pred CCCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCCCC-----CCCeEEcccChhccCC--CCCeEEcCCc
Q 022491 85 RNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSK-----DAPMFVVGVNEKEYKP--ELDIVSNASC 157 (296)
Q Consensus 85 ~d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~~~-----d~~~~v~gvn~~~l~~--~~~iIs~p~C 157 (296)
.+.+ .| .++|+||+|+|++.+++++++++++|+ +|||++++ +.|.++||+|++.+++ ..++||||||
T Consensus 54 ~~~~--~~--~~~D~v~~a~g~~~s~~~a~~~~~~G~--~VID~ss~~R~~~~~p~~vpevN~~~i~~~~~~~iianp~C 127 (339)
T TIGR01296 54 AKIE--SF--EGIDIALFSAGGSVSKEFAPKAAKCGA--IVIDNTSAFRMDPDVPLVVPEVNLEDLKEFNTKGIIANPNC 127 (339)
T ss_pred CChH--Hh--cCCCEEEECCCHHHHHHHHHHHHHCCC--EEEECCHHHhCCCCCCEEeCCcCHHHHhhCccCCEEECCCc
Confidence 1222 33 589999999999999999999999999 79999875 3789999999999874 2449999999
Q ss_pred chhhhHhHHHHHHhhcCeeEEEEEEEeecCCcccc------------cCCCCCcc-------ccCcccccceeeecc---
Q 022491 158 TTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKT------------VDGPSMKD-------WRGGRAASFNIIPSS--- 215 (296)
Q Consensus 158 ~~tal~~~l~~L~~~~gi~~~~~~~v~a~sg~~~~------------~d~~~~~~-------~~~~r~~~~ni~P~~--- 215 (296)
|+||++|+|+||++.|+|++..++++|++||+|+. .+.+.... .+++|++.+|+||+.
T Consensus 128 ~~t~~~l~l~pL~~~~~i~~i~vtt~~~vSgaG~~~~~~l~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~NiIp~~~~~ 207 (339)
T TIGR01296 128 STIQMVVVLKPLHDEAKIKRVVVSTYQAVSGAGNAGVEELYNQTKAKLEGRENNPYIGAPKAKKFPYQIAFNAIPHIDDF 207 (339)
T ss_pred HHHHHHHHHHHHHHhcCccEEEEEeeechhhcChhhHHHHHHHHHHHhcCCCCCccccccccccCCCcccccccCcCCCc
Confidence 99999999999999999999999999999998631 23222111 677899999999995
Q ss_pred --CChhhHHHHhccccC-------CceeEEEEEeeeCceEEEEEEEEeecCCCHHHHHHHHHHhh
Q 022491 216 --TGAAKAVGKVLPALN-------GKLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEES 271 (296)
Q Consensus 216 --~g~~~~~~~~~pel~-------~~v~~~~~~VP~~~g~~~~~~~~l~~~~~~~ev~~~~~~~~ 271 (296)
++|++|+.|+.+|++ .+++++|+|||++|||+.++|++++++++.+|++++|++++
T Consensus 208 ~~~~~~~Ee~ki~~el~~i~~~~~~~v~~t~~rVPv~~G~~~~v~v~~~~~v~~~~i~~~l~~~~ 272 (339)
T TIGR01296 208 NDDGYTKEETKMLFETRKIMGIPDFKVSATCVRVPVFTGHSESVNIEFEKEISPEDVRELLKNAP 272 (339)
T ss_pred ccCCCCHHHHHHHHHHHHHhCCCCCcEEEEeEEccccccEEEEEEEEECCCCCHHHHHHHHhcCC
Confidence 589999888888876 25899999999999999999999999999999999999654
No 23
>COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=100.00 E-value=2.1e-39 Score=292.42 Aligned_cols=239 Identities=17% Similarity=0.170 Sum_probs=180.5
Q ss_pred CeeEEEEEec-CHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEe
Q 022491 5 KKIKIGINGF-GRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFG 83 (296)
Q Consensus 5 m~i~vgI~G~-G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~ 83 (296)
||+||+|+|+ ||+|.||+|+|.+||++|+..+.++ ...+. .+.+.|+++. +.+ .+. ++
T Consensus 1 ~~~kV~IvGasGYtG~EL~rlL~~Hp~ve~~~~ss~-~~~g~-----~~~~~~p~l~-g~~------~l~--------~~ 59 (349)
T COG0002 1 MMIKVGIVGASGYTGLELLRLLAGHPDVELILISSR-ERAGK-----PVSDVHPNLR-GLV------DLP--------FQ 59 (349)
T ss_pred CCceEEEEcCCCCcHHHHHHHHhcCCCeEEEEeech-hhcCC-----chHHhCcccc-ccc------ccc--------cc
Confidence 4699999999 9999999999999999998777765 32321 3467788877 321 121 12
Q ss_pred cCCCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCCCC--------------------C-CCeEEcccC-
Q 022491 84 FRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSK--------------------D-APMFVVGVN- 141 (296)
Q Consensus 84 ~~d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~~~--------------------d-~~~~v~gvn- 141 (296)
..+++++. ..++|+||.|+|++++++.++.+++.|+ .|||+|+| + ...+|||++
T Consensus 60 ~~~~~~~~--~~~~DvvFlalPhg~s~~~v~~l~~~g~--~VIDLSadfR~~d~~~ye~~Yg~~h~~~~~l~~avYGLpE 135 (349)
T COG0002 60 TIDPEKIE--LDECDVVFLALPHGVSAELVPELLEAGC--KVIDLSADFRLKDPEVYEKWYGFTHAGPELLEDAVYGLPE 135 (349)
T ss_pred cCChhhhh--cccCCEEEEecCchhHHHHHHHHHhCCC--eEEECCcccccCCHHHHHHhhCCCCCCchhhhcccccCcc
Confidence 22444442 3579999999999999999999999999 58999886 1 247999997
Q ss_pred --hhccCCCCCeEEcCCcchhhhHhHHHHHHhhcCeeEEEEEEEeecCC---cccccCCCCCccccCcccccceeeecc-
Q 022491 142 --EKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITA---TQKTVDGPSMKDWRGGRAASFNIIPSS- 215 (296)
Q Consensus 142 --~~~l~~~~~iIs~p~C~~tal~~~l~~L~~~~gi~~~~~~~v~a~sg---~~~~~d~~~~~~~~~~r~~~~ni~P~~- 215 (296)
+++|+ ++++|||||||+||..++|+||.++.-|......+++++|| +|+-....+.... ...|+.||.
T Consensus 136 l~~e~i~-~A~lIAnPGCypTa~iLal~PL~~~~ll~~~~~~ivdakSG~SGaGrk~s~~~~~~e-----~~~~~~~Y~~ 209 (349)
T COG0002 136 LHREKIR-GAKLIANPGCYPTAAILALAPLVKAGLLDPDSPPIVDAKSGVSGAGRKASVKNHFPE-----VNDSLRPYGL 209 (349)
T ss_pred cCHHHHh-cCCEeeCCCchHHHHHHHHHHHHHcCCcCCCCceEEEEeEecCcCCCCccccccchh-----hccccccccc
Confidence 67787 89999999999999999999998864333333334555554 3332211111111 223556655
Q ss_pred --CChhhHHHHhccccC---CceeEEEEEeeeCceEEEEEEEEeecCCCHHHHHHHHHHhhcCc
Q 022491 216 --TGAAKAVGKVLPALN---GKLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGK 274 (296)
Q Consensus 216 --~g~~~~~~~~~pel~---~~v~~~~~~VP~~~g~~~~~~~~l~~~~~~~ev~~~~~~~~~~~ 274 (296)
|.|.+|+.+++..+. ..+.|+++.+|+.||+++|+|+.+++.++.+|++++|+++|+++
T Consensus 210 ~~HrH~pEi~q~l~~l~~~~~~v~FtPhl~p~~RGIl~Ti~~~l~~~~t~~~i~~~y~~~Y~~e 273 (349)
T COG0002 210 TGHRHTPEIEQHLGRLAGRKVPVIFTPHLGPFVRGILATIYLKLKDLVTLEELHAAYEEFYAGE 273 (349)
T ss_pred cccCchHHHHHHhhhcccCcCceEEecccccccceEEEEEEEecCCCCCHHHHHHHHHHHhCCC
Confidence 778899999888776 34889999999999999999999999999999999999999873
No 24
>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=100.00 E-value=7.7e-39 Score=295.04 Aligned_cols=236 Identities=15% Similarity=0.205 Sum_probs=188.5
Q ss_pred CCCCCeeEEEEEec-CHHHHHHHHHHH--cCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCE
Q 022491 1 MAGDKKIKIGINGF-GRIGRLVARVAL--QRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEK 77 (296)
Q Consensus 1 m~~~m~i~vgI~G~-G~iG~~l~r~l~--~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~ 77 (296)
|+++ +||+|+|+ |++|++++|+|. +||.++++.+.+. .+.+. .+. |. ++
T Consensus 1 m~~~--~~IaIvGATG~vG~eLlrlL~~~~hP~~~l~~v~s~-~~aG~---~l~-------~~---------------~~ 52 (336)
T PRK05671 1 MSQP--LDIAVVGATGTVGEALVQILEERDFPVGTLHLLASS-ESAGH---SVP-------FA---------------GK 52 (336)
T ss_pred CCCC--CEEEEEccCCHHHHHHHHHHhhCCCCceEEEEEECc-ccCCC---eec-------cC---------------Cc
Confidence 7754 79999999 999999999999 7899999999876 33321 111 11 11
Q ss_pred EEEEEecCCCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCCCC----CCCeEEcccChhccCC--CCCe
Q 022491 78 PVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSK----DAPMFVVGVNEKEYKP--ELDI 151 (296)
Q Consensus 78 ~i~~~~~~d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~~~----d~~~~v~gvn~~~l~~--~~~i 151 (296)
.+.+ . +++..+| .++|+||+|+|++.+.+++++++++|+ +|||+|++ +.|..++++|+++++. .+++
T Consensus 53 ~l~~-~--~~~~~~~--~~vD~vFla~p~~~s~~~v~~~~~~G~--~VIDlS~~fR~~~~pl~lPEvn~~~i~~~~~~~i 125 (336)
T PRK05671 53 NLRV-R--EVDSFDF--SQVQLAFFAAGAAVSRSFAEKARAAGC--SVIDLSGALPSAQAPNVVPEVNAERLASLAAPFL 125 (336)
T ss_pred ceEE-e--eCChHHh--cCCCEEEEcCCHHHHHHHHHHHHHCCC--eEEECchhhcCCCCCEEecccCHHHHccccCCCE
Confidence 1112 2 2222234 489999999999999999999999999 79999987 5899999999999872 2789
Q ss_pred EEcCCcchhhhHhHHHHHHhhcCeeEEEEEEEeecCCcccc-cCCC--------C---CccccCcccccceeeeccC---
Q 022491 152 VSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKT-VDGP--------S---MKDWRGGRAASFNIIPSST--- 216 (296)
Q Consensus 152 Is~p~C~~tal~~~l~~L~~~~gi~~~~~~~v~a~sg~~~~-~d~~--------~---~~~~~~~r~~~~ni~P~~~--- 216 (296)
||||||++|+++++|+||++.+++++..+++++++||+|+. ++.. . .....+.++++||++|+..
T Consensus 126 IAnPgC~~t~~~laL~PL~~~~~~~~v~v~t~~~vSGaG~~~~~~L~~~~~~~~n~~~y~~~~~~~~iafn~~P~ig~~~ 205 (336)
T PRK05671 126 VSSPSASAVALAVALAPLKGLLDIQRVQVTACLAVSSLGREGVSELARQTAELLNARPLEPRFFDRQVAFNLLAQVGAPD 205 (336)
T ss_pred EECCCcHHHHHHHHHHHHHHhcCCCEEEEEEeecCcccCcccchHHHHHHHHHhCCCCccccccccccccccccccCccc
Confidence 99999999999999999998899999999999999999843 3320 0 0122466788899999874
Q ss_pred --ChhhHHHHhccccCC-------ceeEEEEEeeeCceEEEEEEEEeecCCCHHHHHHHHHHhh
Q 022491 217 --GAAKAVGKVLPALNG-------KLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEES 271 (296)
Q Consensus 217 --g~~~~~~~~~pel~~-------~v~~~~~~VP~~~g~~~~~~~~l~~~~~~~ev~~~~~~~~ 271 (296)
+|++|+.||.||+.. ++++||+|||++|||+.++|++++++++.+|++++|++++
T Consensus 206 ~~gh~~eE~r~~~Ei~kiL~~~~~~v~~t~~~vPv~rG~~~tv~v~~~~~~~~~~~~~~l~~~~ 269 (336)
T PRK05671 206 AQGHTALERRLVAELRQLLGLPELKISVTCIQVPVFFGDSLSVALQSAAPVDLAAVNAALEAAP 269 (336)
T ss_pred cCCccHHHHHHHHHHHHHhCCCCCcEEEEeEEechhhhEeeEEEEEECCCCCHHHHHHHHhCCC
Confidence 777777777777653 3889999999999999999999999999999999999544
No 25
>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional
Probab=100.00 E-value=1.3e-38 Score=292.77 Aligned_cols=236 Identities=20% Similarity=0.324 Sum_probs=186.2
Q ss_pred CCCCCeeEEEEEec-CHHHHHHHHHHHcCCCcE---EEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECC
Q 022491 1 MAGDKKIKIGINGF-GRIGRLVARVALQRDDVE---LVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGE 76 (296)
Q Consensus 1 m~~~m~i~vgI~G~-G~iG~~l~r~l~~~p~~e---lv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~ 76 (296)
||.. .+||||+|+ |++|++++|+|.+||+++ +..+.+. .+.+. .+.+.+
T Consensus 1 ~~~~-~~~VaIvGATG~vG~ell~lL~~h~~f~v~~l~~~aS~-~saGk-------------------------~~~~~~ 53 (347)
T PRK06728 1 MSEK-GYHVAVVGATGAVGQKIIELLEKETKFNIAEVTLLSSK-RSAGK-------------------------TVQFKG 53 (347)
T ss_pred CCCC-CCEEEEEeCCCHHHHHHHHHHHHCCCCCcccEEEEECc-ccCCC-------------------------CeeeCC
Confidence 6653 489999999 999999999999999998 5566554 23321 122333
Q ss_pred EEEEEEecCCCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCCCC-----CCCeEEcccChhccCCCCCe
Q 022491 77 KPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSK-----DAPMFVVGVNEKEYKPELDI 151 (296)
Q Consensus 77 ~~i~~~~~~d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~~~-----d~~~~v~gvn~~~l~~~~~i 151 (296)
+.+.+. ..+++. | .++|+||+|+|+..++++++++.++|+ +|||++++ +.|..++++|++.++...++
T Consensus 54 ~~l~v~-~~~~~~--~--~~~Divf~a~~~~~s~~~~~~~~~~G~--~VID~Ss~fR~~~~vplvvPEvN~e~i~~~~~i 126 (347)
T PRK06728 54 REIIIQ-EAKINS--F--EGVDIAFFSAGGEVSRQFVNQAVSSGA--IVIDNTSEYRMAHDVPLVVPEVNAHTLKEHKGI 126 (347)
T ss_pred cceEEE-eCCHHH--h--cCCCEEEECCChHHHHHHHHHHHHCCC--EEEECchhhcCCCCCCeEeCCcCHHHHhccCCE
Confidence 333332 223433 3 489999999999999999999999999 89999987 58999999999999842379
Q ss_pred EEcCCcchhhhHhHHHHHHhhcCeeEEEEEEEeecCCccc-ccCC-----------CCCccccCc-------ccccceee
Q 022491 152 VSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQK-TVDG-----------PSMKDWRGG-------RAASFNII 212 (296)
Q Consensus 152 Is~p~C~~tal~~~l~~L~~~~gi~~~~~~~v~a~sg~~~-~~d~-----------~~~~~~~~~-------r~~~~ni~ 212 (296)
|+||||++|+++++|+||++.++|++..+++++++||+|+ .++. .......++ +++++|++
T Consensus 127 IanPnC~tt~~~laL~PL~~~~~i~~v~V~t~qavSGAG~~gv~eL~~qt~~~l~~~~~~~~~f~~~~~~~~~~iafNvi 206 (347)
T PRK06728 127 IAVPNCSALQMVTALQPIRKVFGLERIIVSTYQAVSGSGIHAIQELKEQAKSILAGEEVESTILPAKKDKKHYPIAFNVL 206 (347)
T ss_pred EECCCCHHHHHHHHHHHHHHcCCccEEEEEEeecccccchhhHHHHHHHHHHHhcCCCCccccccccccccCCceecccc
Confidence 9999999999999999999999999999999999999883 3332 111122345 88999999
Q ss_pred ecc-----CChhhHHH-------Hhc--cccCCceeEEEEEeeeCceEEEEEEEEeecCCCHHHHHHHHHHhhc
Q 022491 213 PSS-----TGAAKAVG-------KVL--PALNGKLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESE 272 (296)
Q Consensus 213 P~~-----~g~~~~~~-------~~~--pel~~~v~~~~~~VP~~~g~~~~~~~~l~~~~~~~ev~~~~~~~~~ 272 (296)
|+. +|+++|+. |++ |.+ +++.||+||||++||...++++++++++.++++++|+++..
T Consensus 207 P~i~~~~~~g~t~EE~K~~~E~~KIL~~~~l--~VsatcvRVPV~~gHs~sv~ve~~~~~~~~~~~~~l~~~~g 278 (347)
T PRK06728 207 PQVDIFTDNDFTFEEVKMIQETKKILEDPNL--KMAATCVRVPVISGHSESVYIELEKEATVAEIKEVLFDAPG 278 (347)
T ss_pred CcCCccccCCccHHHHHHHHHHHHHhCCCCC--cEEEEEEecceeccEEEEEEEEECCCCCHHHHHHHHHcCCC
Confidence 998 45555555 455 333 48999999999999999999999999999999999987643
No 26
>PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=100.00 E-value=2.4e-37 Score=286.01 Aligned_cols=235 Identities=15% Similarity=0.168 Sum_probs=180.9
Q ss_pred eEEEEEec-CHHHHHHHHHHHcCCCcE---EEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEE
Q 022491 7 IKIGINGF-GRIGRLVARVALQRDDVE---LVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVF 82 (296)
Q Consensus 7 i~vgI~G~-G~iG~~l~r~l~~~p~~e---lv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~ 82 (296)
+||||+|+ |++|++++|++++||+++ ++...+. .+.+ ..+.|. ++...++
T Consensus 2 ~~VAIVGATG~vG~ell~llL~~~~f~~~~l~~~ss~-~sg~----------~~~~f~---------------g~~~~v~ 55 (369)
T PRK06598 2 KKVGFVGWRGMVGSVLMQRMVEENDFDLIEPVFFSTS-QAGG----------AAPSFG---------------GKEGTLQ 55 (369)
T ss_pred eEEEEEeCCCHHHHHHHHHHHhCCCCCcCcEEEecch-hhCC----------cccccC---------------CCcceEE
Confidence 79999999 999999999999999887 6664433 2222 112232 2222333
Q ss_pred ecCCCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCCCC-----CCCeEEcccChhccCCC--C--CeEE
Q 022491 83 GFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSK-----DAPMFVVGVNEKEYKPE--L--DIVS 153 (296)
Q Consensus 83 ~~~d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~~~-----d~~~~v~gvn~~~l~~~--~--~iIs 153 (296)
...+++. | .++|+||+|+|+.+++++++++.++|++.+|||++++ +.|.+++++|++.++.. . ++|+
T Consensus 56 ~~~~~~~--~--~~~Divf~a~~~~~s~~~~~~~~~aG~~~~VID~Ss~fR~~~dvplvvPEvN~e~i~~~~~~g~~iIa 131 (369)
T PRK06598 56 DAFDIDA--L--KKLDIIITCQGGDYTNEVYPKLRAAGWQGYWIDAASTLRMKDDAIIILDPVNRDVIDDALANGVKTFV 131 (369)
T ss_pred ecCChhH--h--cCCCEEEECCCHHHHHHHHHHHHhCCCCeEEEECChHHhCCCCCcEEcCCcCHHHHHhhhhcCCCEEE
Confidence 3222332 3 4799999999999999999999999954489999987 59999999999988631 1 5899
Q ss_pred cCCcchhhhHhHHHHHHhhcCeeEEEEEEEeecCCcccc-cC------------------------------------CC
Q 022491 154 NASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKT-VD------------------------------------GP 196 (296)
Q Consensus 154 ~p~C~~tal~~~l~~L~~~~gi~~~~~~~v~a~sg~~~~-~d------------------------------------~~ 196 (296)
||||+||+++++|+||++.++|++..+++++++||+|+. ++ ..
T Consensus 132 nPnC~tt~~~laL~PL~~~~~i~~viVst~qavSGAG~~g~~eL~~qt~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (369)
T PRK06598 132 GGNCTVSLMLMALGGLFKNDLVEWVSVMTYQAASGAGARNMRELLTQMGALHGAVADELADPASAILDIDRKVTELMRSG 211 (369)
T ss_pred cCChHHHHHHHHHHHHHhcCCceEEEEEeeecccccCHHHHHHHHHHHHHHhhhccccccccchhhhhhhhhhhhhcccC
Confidence 999999999999999999989999999999999999842 11 00
Q ss_pred CCccccCcccccceeeecc-----CChhhHHH-------Hhcccc--CCceeEEEEEeeeCceEEEEEEEEeecCCCHHH
Q 022491 197 SMKDWRGGRAASFNIIPSS-----TGAAKAVG-------KVLPAL--NGKLTGMSFRVPTVDVSVVDLTVRLEKEATYEE 262 (296)
Q Consensus 197 ~~~~~~~~r~~~~ni~P~~-----~g~~~~~~-------~~~pel--~~~v~~~~~~VP~~~g~~~~~~~~l~~~~~~~e 262 (296)
......+++++++|++|+. +|+++|+. |++... .-+++.||+||||++||...++++++++++.++
T Consensus 212 ~~~~~~f~~~iafN~iP~I~~~~~~g~t~EE~K~~~EtrKIL~~~~~~l~vs~tcVRVPV~~gHs~sv~ve~~~~~~~~~ 291 (369)
T PRK06598 212 DLPTDNFGVPLAGSLIPWIDKDLGNGQSREEWKGQAETNKILGLTKNPIPVDGLCVRVGAMRCHSQALTIKLKKDVPLAE 291 (369)
T ss_pred CCCcccCCCcccccccCcCCCcccCCchHHHHHHHHHHHHHhCCCCCCCeEEEEEEEcceeccEEEEEEEEECCCCCHHH
Confidence 0012345678999999998 46666655 455221 114899999999999999999999999999999
Q ss_pred HHHHHHHhh
Q 022491 263 IKNAIKEES 271 (296)
Q Consensus 263 v~~~~~~~~ 271 (296)
++++|+++.
T Consensus 292 i~~~L~~~~ 300 (369)
T PRK06598 292 IEEILAAHN 300 (369)
T ss_pred HHHHHHhcC
Confidence 999999853
No 27
>PRK06901 aspartate-semialdehyde dehydrogenase; Provisional
Probab=100.00 E-value=2.7e-36 Score=272.06 Aligned_cols=234 Identities=19% Similarity=0.223 Sum_probs=188.1
Q ss_pred eEEEEEec-CHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEecC
Q 022491 7 IKIGINGF-GRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFR 85 (296)
Q Consensus 7 i~vgI~G~-G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~~ 85 (296)
++||| |+ |.+|++++++|.++. | +..+. +++ ++. + .+.|+.+.|+|+++.+..
T Consensus 4 ~~iAi-GATg~VG~~~l~~Leer~-f-------pv~~l----~l~--~s~---~------~s~gk~i~f~g~~~~V~~-- 57 (322)
T PRK06901 4 LNIAI-AAEFELSEKLLEALEQSD-L-------EIEQI----SIV--EIE---P------FGEEQGIRFNNKAVEQIA-- 57 (322)
T ss_pred ceEEE-ecCcHHHHHHHHHHHhcC-C-------chhhe----eec--ccc---c------ccCCCEEEECCEEEEEEE--
Confidence 68999 99 999999999999875 2 11111 111 111 0 113446888898887763
Q ss_pred CCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCCCC-----CCCeEEcccChhccCC--CCCeEEcCCcc
Q 022491 86 NPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSK-----DAPMFVVGVNEKEYKP--ELDIVSNASCT 158 (296)
Q Consensus 86 d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~~~-----d~~~~v~gvn~~~l~~--~~~iIs~p~C~ 158 (296)
+++.+| .++|++|+ +|...++++++.+.++|+ +|||+||. |+|++||++|++.+.. ..+||+||+|+
T Consensus 58 -l~~~~f--~~vDia~f-ag~~~s~~~ap~a~~aG~--~VIDnSsa~Rmd~dVPLVVPEVN~e~l~~~~~~~IIanPNCs 131 (322)
T PRK06901 58 -PEEVEW--ADFNYVFF-AGKMAQAEHLAQAAEAGC--IVIDLYGICAALANVPVVVPSVNDEQLAELRQRNIVSLPDPQ 131 (322)
T ss_pred -CCccCc--ccCCEEEE-cCHHHHHHHHHHHHHCCC--EEEECChHhhCCCCCCeecccCCHHHHhcCcCCCEEECCcHH
Confidence 445555 58999999 899999999999999999 99999986 5999999999998874 35799999999
Q ss_pred hhhhHhHHHHHHhhcCeeEEEEEEEeecCCcc-cccCCC--------CCc-cccCcccccceeeeccC-ChhhHHHHhcc
Q 022491 159 TNCLAPLAKVIHDKFGIVEGLMTTVHSITATQ-KTVDGP--------SMK-DWRGGRAASFNIIPSST-GAAKAVGKVLP 227 (296)
Q Consensus 159 ~tal~~~l~~L~~~~gi~~~~~~~v~a~sg~~-~~~d~~--------~~~-~~~~~r~~~~ni~P~~~-g~~~~~~~~~p 227 (296)
|++++++|+||++.|||++..++|||++||+| ++++.. .+. .....++++||++|+.. +-..|.+|++|
T Consensus 132 Ti~l~~aL~pL~~~~~l~rv~VsTyQavSGaG~~gv~eL~~qt~~~~n~~~~~~~~~~iAFNviP~ig~~m~~EtrKIl~ 211 (322)
T PRK06901 132 VSQLALALAPFLQEQPLSQIFVTSLLPASYTDAETVKKLAGQTARLLNGIPLDEEEQRLAFDVFPANAQNLELQLQKIFP 211 (322)
T ss_pred HHHHHHHHHHHHHhcCCcEEEEEeecchhhcCHhHHHHHHHHHHHHhCCCCCCCCceeeeccccccCCccHHHHHHHHhC
Confidence 99999999999999999999999999999987 233321 010 11223789999999994 56688889998
Q ss_pred ccCCceeEEEEEeeeCceEEEEEEEEeecCCCHHHHHHHHHHhhcC
Q 022491 228 ALNGKLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEG 273 (296)
Q Consensus 228 el~~~v~~~~~~VP~~~g~~~~~~~~l~~~~~~~ev~~~~~~~~~~ 273 (296)
++ .+++.||+||||++||...++++++++++.++++++|+++.+-
T Consensus 212 ~l-~~VsaTcVRVPV~~GHs~sV~ve~e~~~~~e~~~~~l~~~~gv 256 (322)
T PRK06901 212 QL-ENVTFHSIQVPVFYGLAQMVTALSEYELDIESQLAEWQQNNLL 256 (322)
T ss_pred Cc-ccEEEEEEEcceeccEEEEEEEEECCCCCHHHHHHHHHhCCCc
Confidence 77 2489999999999999999999999999999999999987753
No 28
>TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan.
Probab=100.00 E-value=5.1e-36 Score=278.33 Aligned_cols=255 Identities=21% Similarity=0.245 Sum_probs=189.6
Q ss_pred eEEEEEec-CHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEecC
Q 022491 7 IKIGINGF-GRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFR 85 (296)
Q Consensus 7 i~vgI~G~-G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~~ 85 (296)
+||||+|+ |++|++|+|+|.+||+++++++.+...+.+. .+...++.+.++.. .+ .+ ..+ .+...
T Consensus 1 ~kVaIvGatG~~G~~L~~~l~~~~~~~l~~v~~~~~~~g~-----~~~~~~~~~~~~~~---~~-~~----~~~-~~~~~ 66 (341)
T TIGR00978 1 MRVAVLGATGLVGQKFVKLLAKHPYFELAKVVASPRSAGK-----RYGEAVKWIEPGDM---PE-YV----RDL-PIVEP 66 (341)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCceEEEEEEChhhcCC-----cchhhccccccCCC---cc-cc----cee-EEEeC
Confidence 48999999 9999999999999999999999654222221 11233332100000 00 00 111 12222
Q ss_pred CCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCCCC-----CCCeEEcccChhccCC---------CCCe
Q 022491 86 NPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSK-----DAPMFVVGVNEKEYKP---------ELDI 151 (296)
Q Consensus 86 d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~~~-----d~~~~v~gvn~~~l~~---------~~~i 151 (296)
+++ .| .++|+||+|+|++.+.++++.+.++|+ .|||++++ +.|.+++++|.+.|.. +.++
T Consensus 67 ~~~--~~--~~~DvVf~a~p~~~s~~~~~~~~~~G~--~VIDlsg~fR~~~~~~~~~p~vn~~~~~~~e~~~~~~~~~~i 140 (341)
T TIGR00978 67 EPV--AS--KDVDIVFSALPSEVAEEVEPKLAEAGK--PVFSNASNHRMDPDVPLIIPEVNSDHLELLKVQKERGWKGFI 140 (341)
T ss_pred CHH--Hh--ccCCEEEEeCCHHHHHHHHHHHHHCCC--EEEECChhhccCCCCceeccccCHHHHhhHHhhhhhccCccE
Confidence 232 23 589999999999999999999999999 67888876 3788999999664431 3579
Q ss_pred EEcCCcchhhhHhHHHHHHhhcCeeEEEEEEEeecCCcccccCCCCCccccCcccccceeeeccC----ChhhHHHHhcc
Q 022491 152 VSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSST----GAAKAVGKVLP 227 (296)
Q Consensus 152 Is~p~C~~tal~~~l~~L~~~~gi~~~~~~~v~a~sg~~~~~d~~~~~~~~~~r~~~~ni~P~~~----g~~~~~~~~~p 227 (296)
|||||||+||++++|+||++.++|++..+++++++||+|+... . .+.+++|++|+.. .|.+|+.++++
T Consensus 141 VanPgC~~t~~~lal~pL~~~~~i~~v~v~t~~gvSgaG~~~~-----~---~~~~~~Ni~py~~~~ehrh~~Ei~~il~ 212 (341)
T TIGR00978 141 VTNPNCTTAGLTLALKPLIDAFGIKKVHVTTMQAVSGAGYPGV-----P---SMDILDNIIPHIGGEEEKIERETRKILG 212 (341)
T ss_pred EeCCCcHHHHHHHHHHHHHHhCCCcEEEEEEEEccCCCCCCCC-----c---cchhhCCeEecCcHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999986421 1 2457889999984 35677888888
Q ss_pred ccCC--------ceeEEEEEeeeCceEEEEEEEEeecCCCHHHHHHHHHHhhcCcCCCcccccCCceeee
Q 022491 228 ALNG--------KLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVST 289 (296)
Q Consensus 228 el~~--------~v~~~~~~VP~~~g~~~~~~~~l~~~~~~~ev~~~~~~~~~~~~~~~~~~~~~~~vs~ 289 (296)
.+.+ +++|+|+|||++|||++++|++++++++.+|++++|+++|+.+....+.-+.+|+|-.
T Consensus 213 ~~~~~~~~~~~~~v~~t~~~vPv~rG~~~tv~v~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~fv~~ 282 (341)
T TIGR00978 213 KLENGKIEPAPFSVSATTTRVPVLDGHTESVHVEFDKKFDIEEIREALKSFRGLPQKLGLPSAPEKPIIV 282 (341)
T ss_pred ccccCcccCCCceEEEEEEEcCccccEEEEEEEEeCCCCCHHHHHHHHHhCcCccccccCCCCCCCcEEE
Confidence 7633 4899999999999999999999999999999999999999874433333344455433
No 29
>PLN02383 aspartate semialdehyde dehydrogenase
Probab=100.00 E-value=2.6e-36 Score=279.32 Aligned_cols=233 Identities=16% Similarity=0.200 Sum_probs=180.7
Q ss_pred eeEEEEEec-CHHHHHHHHHHHc--CCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEE
Q 022491 6 KIKIGINGF-GRIGRLVARVALQ--RDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVF 82 (296)
Q Consensus 6 ~i~vgI~G~-G~iG~~l~r~l~~--~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~ 82 (296)
++||+|+|+ |++|++++|+|.+ ||.+++..+.+. ++.+. .+ .+++..+. +
T Consensus 7 ~~kVaVvGAtG~vG~eLlrlL~~~~hP~~~l~~las~-rsaGk---~~----------------------~~~~~~~~-v 59 (344)
T PLN02383 7 GPSVAIVGVTGAVGQEFLSVLTDRDFPYSSLKMLASA-RSAGK---KV----------------------TFEGRDYT-V 59 (344)
T ss_pred CCeEEEEcCCChHHHHHHHHHHhCCCCcceEEEEEcc-CCCCC---ee----------------------eecCceeE-E
Confidence 589999999 9999999999998 999999999766 34321 11 11111121 2
Q ss_pred ecCCCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCCCC-----CCCeEEcccChhccCCC------CCe
Q 022491 83 GFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSK-----DAPMFVVGVNEKEYKPE------LDI 151 (296)
Q Consensus 83 ~~~d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~~~-----d~~~~v~gvn~~~l~~~------~~i 151 (296)
...+++ +| .++|+||+|+|++.++++++++.++|+ +|||+|++ +.|..++++|++.++.. .++
T Consensus 60 ~~~~~~--~~--~~~D~vf~a~p~~~s~~~~~~~~~~g~--~VIDlS~~fR~~~~~p~~vPEvn~~~i~~~~~~~~~~~i 133 (344)
T PLN02383 60 EELTED--SF--DGVDIALFSAGGSISKKFGPIAVDKGA--VVVDNSSAFRMEEGVPLVIPEVNPEAMKHIKLGKGKGAL 133 (344)
T ss_pred EeCCHH--HH--cCCCEEEECCCcHHHHHHHHHHHhCCC--EEEECCchhhcCCCCceECCCcCHHHHHhhhhcccCCcE
Confidence 222222 23 479999999999999999999999999 89999987 48899999999988731 239
Q ss_pred EEcCCcchhhhHhHHHHHHhhcCeeEEEEEEEeecCCccc-ccCCCC-----------CccccCcccccceeeeccC---
Q 022491 152 VSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQK-TVDGPS-----------MKDWRGGRAASFNIIPSST--- 216 (296)
Q Consensus 152 Is~p~C~~tal~~~l~~L~~~~gi~~~~~~~v~a~sg~~~-~~d~~~-----------~~~~~~~r~~~~ni~P~~~--- 216 (296)
|+|||||+|+++++|+||++.++|++..+++++++||+|+ .++..+ .....+++..++|++|+.+
T Consensus 134 IanPgC~~t~~~laL~PL~~~~~i~~vvv~t~~~vSGAG~~~~~~l~~q~~~~l~~~~~~~~~~~~~~ayn~~ph~~~~~ 213 (344)
T PLN02383 134 IANPNCSTIICLMAVTPLHRHAKVKRMVVSTYQAASGAGAAAMEELEQQTREVLEGKPPTCNIFAQQYAFNLFSHNAPMQ 213 (344)
T ss_pred EECCCcHHHHHHHHHHHHHHcCCeeEEEEEeeecccccCHHHHHHHHHHHHHHhcCCCCchhccCCccccccccccCccc
Confidence 9999999999999999999999999999999999999983 333221 1244577889999999875
Q ss_pred --ChhhHHH-------HhccccCCceeEEEEEeeeCceEEEEEEEEeecCCCHHHHHHHHHHhh
Q 022491 217 --GAAKAVG-------KVLPALNGKLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEES 271 (296)
Q Consensus 217 --g~~~~~~-------~~~pel~~~v~~~~~~VP~~~g~~~~~~~~l~~~~~~~ev~~~~~~~~ 271 (296)
|+++++. +++..-.-++++||+|||++|||+.++|++++++++.++++++|++++
T Consensus 214 ~~g~~~~E~~~~~e~~kil~~~~~~v~~t~~~vPv~rG~~~sv~v~~~~~v~~~~~~~~l~~~p 277 (344)
T PLN02383 214 ENGYNEEEMKLVKETRKIWNDDDVKVTATCIRVPVMRAHAESINLQFEKPLDEATAREILASAP 277 (344)
T ss_pred cCCCChHHHHHHHHHHHHhCCCCCeEEEEeEecCccccEEEEEEEEECCCCCHHHHHHHHhcCC
Confidence 2333322 333111124899999999999999999999999999999999999843
No 30
>PF00044 Gp_dh_N: Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain; InterPro: IPR020828 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) plays an important role in glycolysis and gluconeogenesis [] by reversibly catalysing the oxidation and phosphorylation of D-glyceraldehyde-3-phosphate to 1,3-diphospho-glycerate. The enzyme exists as a tetramer of identical subunits, each containing 2 conserved functional domains: an NAD-binding domain, and a highly conserved catalytic domain []. The enzyme has been found to bind to actin and tropomyosin, and may thus have a role in cytoskeleton assembly. Alternatively, the cytoskeleton may provide a framework for precise positioning of the glycolytic enzymes, thus permitting efficient passage of metabolites from enzyme to enzyme []. GAPDH displays diverse non-glycolytic functions as well, its role depending upon its subcellular location. For instance, the translocation of GAPDH to the nucleus acts as a signalling mechanism for programmed cell death, or apoptosis []. The accumulation of GAPDH within the nucleus is involved in the induction of apoptosis, where GAPDH functions in the activation of transcription. The presence of GAPDH is associated with the synthesis of pro-apoptotic proteins like BAX, c-JUN and GAPDH itself. GAPDH has been implicated in certain neurological diseases: GAPDH is able to bind to the gene products from neurodegenerative disorders such as Huntington's disease, Alzheimer's disease, Parkinson's disease and Machado-Joseph disease through stretches encoded by their CAG repeats. Abnormal neuronal apoptosis is associated with these diseases. Propargylamines such as deprenyl increase neuronal survival by interfering with apoptosis signalling pathways via their binding to GAPDH, which decreases the synthesis of pro-apoptotic proteins []. This entry represents the N-terminal domain which is a Rossmann NAD(P) binding fold.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 2G82_Q 1CER_R 1ZNQ_Q 3GPD_G 1U8F_R 3DOC_B 2YYY_A 1GPD_G 4GPD_1 2I5P_O ....
Probab=100.00 E-value=8e-37 Score=250.44 Aligned_cols=149 Identities=56% Similarity=0.988 Sum_probs=136.5
Q ss_pred eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEecCC
Q 022491 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRN 86 (296)
Q Consensus 7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~~d 86 (296)
+||||||||||||.++|++..+|++|+++||+...++++++|+++|||+|+.|+ +.+..+++ .|.++|+.|++++..+
T Consensus 1 ikVgINGfGRIGR~v~r~~~~~~~~evvaInd~~~~~~~~a~LlkyDs~~G~~~-~~v~~~~~-~l~v~G~~I~~~~~~d 78 (151)
T PF00044_consen 1 IKVGINGFGRIGRLVLRAALDQPDIEVVAINDPAPDPEYLAYLLKYDSVHGRFP-GDVEVDDD-GLIVNGKKIKVTEERD 78 (151)
T ss_dssp EEEEEESTSHHHHHHHHHHHTSTTEEEEEEEESSSSHHHHHHHHHEETTTESGS-SHEEEETT-EEEETTEEEEEEHTSS
T ss_pred CEEEEECCCcccHHHHHhhcccceEEEEEEecccccchhhhhhhhcccccccee-cccccccc-eeEeecccccchhhhh
Confidence 699999999999999999999999999999999558999999999999999998 77776666 5999999999999999
Q ss_pred CCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCCCCC--CCeEEcccChhccCCCCCeEEcCCc
Q 022491 87 PEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKD--APMFVVGVNEKEYKPELDIVSNASC 157 (296)
Q Consensus 87 ~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~~~d--~~~~v~gvn~~~l~~~~~iIs~p~C 157 (296)
|+++||.+.++|+|+||||.|.+++.++.|+++|+|+|++++++++ +|++|||+|++.+++..++||++||
T Consensus 79 p~~i~W~~~gvDiVvEcTG~f~~~~~~~~hl~~GakkViisap~~~~~~~t~V~GvN~~~~~~~~~iIS~aSC 151 (151)
T PF00044_consen 79 PEEIPWGELGVDIVVECTGKFRTRENAEAHLDAGAKKVIISAPSKDDADPTFVMGVNHDDYDPEHHIISNASC 151 (151)
T ss_dssp GGGSTHHHHTESEEEETSSSTHSHHHHTHHHHTTESEEEESSS-SSSSSEEE-TTTSGGGGTTTTSEEEE--H
T ss_pred hcccccccccccEEEeccccceecccccccccccccceeeccccccccCCeEEeeccHHHhCCCCCEEEccCC
Confidence 9999999999999999999999999999999999999999999986 8999999999999965599999999
No 31
>COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=100.00 E-value=5.5e-36 Score=270.52 Aligned_cols=233 Identities=23% Similarity=0.301 Sum_probs=181.3
Q ss_pred eeEEEEEec-CHHHHHHHHHHHc-CCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEe
Q 022491 6 KIKIGINGF-GRIGRLVARVALQ-RDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFG 83 (296)
Q Consensus 6 ~i~vgI~G~-G~iG~~l~r~l~~-~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~ 83 (296)
|+||||+|+ |.+|++++++|.+ |+.++.+.+....++.+ ..|..|. ++.+.+..
T Consensus 1 ~~~VavvGATG~VG~~~~~~L~e~~f~~~~~~~~AS~rSaG---------~~~~~f~---------------~~~~~v~~ 56 (334)
T COG0136 1 KLNVAVLGATGAVGQVLLELLEERHFPFEELVLLASARSAG---------KKYIEFG---------------GKSIGVPE 56 (334)
T ss_pred CcEEEEEeccchHHHHHHHHHHhcCCCcceEEEEecccccC---------Ccccccc---------------CccccCcc
Confidence 379999999 9999999999998 88888666654424443 2223232 22221211
Q ss_pred cCCCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCCCC-----CCCeEEcccChhccCC--CCC-eEEcC
Q 022491 84 FRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSK-----DAPMFVVGVNEKEYKP--ELD-IVSNA 155 (296)
Q Consensus 84 ~~d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~~~-----d~~~~v~gvn~~~l~~--~~~-iIs~p 155 (296)
.-.+..+| .++|+||+|.|...++++.+++.++|+ +|||++|. |+|.+|+++|++.+.. ... ||+||
T Consensus 57 -~~~~~~~~--~~~Divf~~ag~~~s~~~~p~~~~~G~--~VIdnsSa~Rm~~DVPLVVPeVN~~~l~~~~~rg~Iianp 131 (334)
T COG0136 57 -DAADEFVF--SDVDIVFFAAGGSVSKEVEPKAAEAGC--VVIDNSSAFRMDPDVPLVVPEVNPEHLIDYQKRGFIIANP 131 (334)
T ss_pred -cccccccc--ccCCEEEEeCchHHHHHHHHHHHHcCC--EEEeCCcccccCCCCCEecCCcCHHHHHhhhhCCCEEECC
Confidence 01334455 389999999999999999999999999 99999986 6999999999888763 234 99999
Q ss_pred CcchhhhHhHHHHHHhhcCeeEEEEEEEeecCCccc-ccCCCCC---------ccccCcccccceeeeccC-----Chhh
Q 022491 156 SCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQK-TVDGPSM---------KDWRGGRAASFNIIPSST-----GAAK 220 (296)
Q Consensus 156 ~C~~tal~~~l~~L~~~~gi~~~~~~~v~a~sg~~~-~~d~~~~---------~~~~~~r~~~~ni~P~~~-----g~~~ 220 (296)
+|+|..++++|+||+++++|++..++|+|++||+|. .++.... ...-.++.+++|++|++. |+++
T Consensus 132 NCst~~l~~aL~PL~~~~~i~~v~VsTyQAvSGAG~~~~~el~~q~~~~~~~~~i~~~~~~iAfNviP~I~~~~~ng~t~ 211 (334)
T COG0136 132 NCSTIQLVLALKPLHDAFGIKRVVVSTYQAVSGAGAEGGVELAGQTDALLNGIPILPIGYPLAFNVIPHIDGFLDNGYTK 211 (334)
T ss_pred ChHHHHHHHHHHHHHhhcCceEEEEEEeehhhhcCccchhhHHHHHhhhccCcccccccccccccccccCCccccCCccH
Confidence 999999999999999999999999999999999984 4432110 011126789999999995 4677
Q ss_pred HHHH-------hccccCCceeEEEEEeeeCceEEEEEEEEeecCCCHHHHHHHH
Q 022491 221 AVGK-------VLPALNGKLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAI 267 (296)
Q Consensus 221 ~~~~-------~~pel~~~v~~~~~~VP~~~g~~~~~~~~l~~~~~~~ev~~~~ 267 (296)
|+.| ++++-.-+++++|+|||+++||...++++++++++.+|+.+.+
T Consensus 212 EE~K~~~Et~KIlg~~~~~VsatcvRVPV~~GHse~v~ve~~~~~~~~e~~~~~ 265 (334)
T COG0136 212 EEWKIEAETRKILGDPDIKVSATCVRVPVFYGHSEAVTVEFKKDVDPEEIREEL 265 (334)
T ss_pred HHHHHHHHHHHHhCCCCCceEEEEEEcceecccceEEEEEecCCCCHHHHHHHH
Confidence 7665 4443334699999999999999999999999999999999665
No 32
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=100.00 E-value=7.4e-36 Score=277.42 Aligned_cols=238 Identities=18% Similarity=0.192 Sum_probs=175.6
Q ss_pred eEEEEEec-CHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEecC
Q 022491 7 IKIGINGF-GRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFR 85 (296)
Q Consensus 7 i~vgI~G~-G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~~ 85 (296)
+||||+|+ |++|++++|+|.+||.++++++.+...+.+. .+.+.|+++. +. .+ + .+...
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~~sagk-----~~~~~~~~l~-~~----~~--~--------~~~~~ 60 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRESAGK-----PVSEVHPHLR-GL----VD--L--------NLEPI 60 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCceEEEEeccchhcCC-----ChHHhCcccc-cc----CC--c--------eeecC
Confidence 48999999 9999999999999999999987543233321 1233344333 10 00 1 11111
Q ss_pred CCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCCCC---CCC------------------eEEccc---C
Q 022491 86 NPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSK---DAP------------------MFVVGV---N 141 (296)
Q Consensus 86 d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~~~---d~~------------------~~v~gv---n 141 (296)
+++++ ..++|+||+|+|+..+++++++++++|+ .|||+|++ +.+ .++||+ |
T Consensus 61 ~~~~~---~~~~DvVf~alP~~~s~~~~~~~~~~G~--~VIDlS~~fR~~~~~~y~~~y~~~~~~~~~~~~~~y~lPE~n 135 (346)
T TIGR01850 61 DEEEI---AEDADVVFLALPHGVSAELAPELLAAGV--KVIDLSADFRLKDPEVYEKWYGFEHAGPELLQEAVYGLPELH 135 (346)
T ss_pred CHHHh---hcCCCEEEECCCchHHHHHHHHHHhCCC--EEEeCChhhhcCChhhhHHhcCCCCCChhhhcCceEECCccC
Confidence 23322 1379999999999999999999999998 89999876 111 255554 6
Q ss_pred hhccCCCCCeEEcCCcchhhhHhHHHHHHhhcCee--EEEEEEEeecCCcccc-cCCCCCccccCcccccceeeeccCCh
Q 022491 142 EKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIV--EGLMTTVHSITATQKT-VDGPSMKDWRGGRAASFNIIPSSTGA 218 (296)
Q Consensus 142 ~~~l~~~~~iIs~p~C~~tal~~~l~~L~~~~gi~--~~~~~~v~a~sg~~~~-~d~~~~~~~~~~r~~~~ni~P~~~g~ 218 (296)
+++++ ++++||||||++|+++++|+||++.+.++ +..+++++++||+|+. .+..+ ...+.+....+|++| +.|
T Consensus 136 ~~~i~-~~~iianPgC~~t~~~l~L~PL~~~~~i~~~~i~v~~~sgvSGaG~~~~~~~~-~~~~~~~~~~y~~~~--h~h 211 (346)
T TIGR01850 136 REEIK-GARLIANPGCYPTATLLALAPLLKEGLIDPTSIIVDAKSGVSGAGRKASPANH-FPEVNENLRPYKVTG--HRH 211 (346)
T ss_pred HHHhC-CCcEEEcCCcHHHHHHHHHHHHHHcCCCCCCcEEEEEEEECcccCcCcccccc-chhhcCCeeeeccCC--cCc
Confidence 78887 68899999999999999999999988886 6789999999999864 33322 122222222334443 456
Q ss_pred hhHHHHhccccCC---ceeEEEEEeeeCceEEEEEEEEeecCCCHHHHHHHHHHhhcC
Q 022491 219 AKAVGKVLPALNG---KLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEG 273 (296)
Q Consensus 219 ~~~~~~~~pel~~---~v~~~~~~VP~~~g~~~~~~~~l~~~~~~~ev~~~~~~~~~~ 273 (296)
.+|+.+.+..+.+ +++|+|+|||++|||+.++|++++++++.+|++++|+++|++
T Consensus 212 ~~Ei~~~l~~~~~~~~~v~ft~~~vPv~rG~~~tv~v~~~~~~~~~~~~~~~~~~y~~ 269 (346)
T TIGR01850 212 TPEIEQELGRLAGGKVKVSFTPHLVPMTRGILATIYAKLKDGLTEEDLRAAYEEFYAD 269 (346)
T ss_pred HHHHHHHHHHhcCCCCCEEEEeEEeeccccEEEEEEEecCCCCCHHHHHHHHHHHhCC
Confidence 7777776655422 489999999999999999999999999999999999999976
No 33
>PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=100.00 E-value=1.3e-35 Score=276.33 Aligned_cols=238 Identities=23% Similarity=0.268 Sum_probs=179.4
Q ss_pred CeeEEEEEec-CHHHHHHHHHHHcCCCcEEEEE-ecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEE
Q 022491 5 KKIKIGINGF-GRIGRLVARVALQRDDVELVAV-NDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVF 82 (296)
Q Consensus 5 m~i~vgI~G~-G~iG~~l~r~l~~~p~~elv~i-~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~ 82 (296)
||+||+|+|+ |++|++++|+|.+||++|++.+ .+. .+.+. . +.+.++... . + .+.-....+.+
T Consensus 2 ~~~~V~I~GatG~iG~~l~~~L~~~p~~el~~~~~s~-~~~G~---~--~~~~~~~~~--~-----~-~~~~~~~~~~v- 66 (349)
T PRK08664 2 MKLKVGILGATGMVGQRFVQLLANHPWFEVTALAASE-RSAGK---T--YGEAVRWQL--D-----G-PIPEEVADMEV- 66 (349)
T ss_pred CCcEEEEECCCCHHHHHHHHHHHcCCCceEEEEEcCh-hhcCC---c--ccccccccc--c-----c-cccccccceEE-
Confidence 4589999999 9999999999999999999999 443 23321 1 122222100 0 0 00000011112
Q ss_pred ecCCCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCCCC-----CCCeEEcccChhccC----------C
Q 022491 83 GFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSK-----DAPMFVVGVNEKEYK----------P 147 (296)
Q Consensus 83 ~~~d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~~~-----d~~~~v~gvn~~~l~----------~ 147 (296)
...+++.+ .++|+||+|+|++.+.++++.+.++|+ .+||++++ +.|..++++|++.+. +
T Consensus 67 ~~~~~~~~----~~~DvVf~a~p~~~s~~~~~~~~~~G~--~vIDls~~fR~~~~~~~~~p~vn~~~yg~~e~~~~~~~~ 140 (349)
T PRK08664 67 VSTDPEAV----DDVDIVFSALPSDVAGEVEEEFAKAGK--PVFSNASAHRMDPDVPLVIPEVNPEHLELIEVQRKRRGW 140 (349)
T ss_pred EeCCHHHh----cCCCEEEEeCChhHHHHHHHHHHHCCC--EEEECCchhcCCCCCCcCChhhCHHHHcChHhhHhhccC
Confidence 22244433 479999999999999999988889999 67888775 366788899865442 1
Q ss_pred CCCeEEcCCcchhhhHhHHHHHHhhcCeeEEEEEEEeecCCcccccCCCCCccccCcccccceeeeccCC----hhhHHH
Q 022491 148 ELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTG----AAKAVG 223 (296)
Q Consensus 148 ~~~iIs~p~C~~tal~~~l~~L~~~~gi~~~~~~~v~a~sg~~~~~d~~~~~~~~~~r~~~~ni~P~~~g----~~~~~~ 223 (296)
+.++||||||||||++++|+||++ +|+++..++++|++||+|+... ..+.+++|++|+..+ |.+|+.
T Consensus 141 ~~~iVa~p~C~~t~~~l~l~pL~~-~gl~~i~v~~~~g~SgaG~~~~--------~~~~~~~N~~p~~~~~ehrh~~Ei~ 211 (349)
T PRK08664 141 DGFIVTNPNCSTIGLVLALKPLMD-FGIERVHVTTMQAISGAGYPGV--------PSMDIVDNVIPYIGGEEEKIEKETL 211 (349)
T ss_pred CceEEEccCHHHHHHHHHHHHHHH-CCCcEEEEEEEeccccCCcccc--------hhhhhhcCcccccCchhhhhhHHHH
Confidence 357999999999999999999999 9999999999999999975321 134578899998843 456666
Q ss_pred Hhcccc--------CCceeEEEEEeeeCceEEEEEEEEeecCCCHHHHHHHHHHhhc
Q 022491 224 KVLPAL--------NGKLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESE 272 (296)
Q Consensus 224 ~~~pel--------~~~v~~~~~~VP~~~g~~~~~~~~l~~~~~~~ev~~~~~~~~~ 272 (296)
+++... +.+++++|+|||++|||++++|++++++++.+|++++|+++|+
T Consensus 212 ~~l~~~~~~~~~~~~~~v~~t~~~vPv~rG~~~tv~~~l~~~~~~~~v~~~~~~~~~ 268 (349)
T PRK08664 212 KILGKFEGGKIVPADFPISATCHRVPVIDGHTEAVFVKFKEDVDPEEIREALESFKG 268 (349)
T ss_pred HHhhhcccccccCCCceEEEEeEEccccccEEEEEEEEeCCCCCHHHHHHHHHhccC
Confidence 665443 5569999999999999999999999999999999999999998
No 34
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=100.00 E-value=2.6e-35 Score=273.56 Aligned_cols=238 Identities=21% Similarity=0.222 Sum_probs=180.2
Q ss_pred CeeEEEEEec-CHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEe
Q 022491 5 KKIKIGINGF-GRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFG 83 (296)
Q Consensus 5 m~i~vgI~G~-G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~ 83 (296)
||+||+|+|+ |++|++++++|.+||+++++++.++ .+.+. . +.+.|+++. +. .+ + .+.
T Consensus 1 ~m~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~-~~~g~---~--l~~~~~~~~-~~----~~--~--------~~~ 59 (343)
T PRK00436 1 MMIKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSR-SSAGK---P--LSDVHPHLR-GL----VD--L--------VLE 59 (343)
T ss_pred CCeEEEEECCCCHHHHHHHHHHHcCCCceEEEEECc-cccCc---c--hHHhCcccc-cc----cC--c--------eee
Confidence 4589999999 9999999999999999999999875 33221 1 122333222 10 00 1 111
Q ss_pred cCCCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCCCC----C--------------------CCeEEcc
Q 022491 84 FRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSK----D--------------------APMFVVG 139 (296)
Q Consensus 84 ~~d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~~~----d--------------------~~~~v~g 139 (296)
+.++..| .++|+||.|+|+..+.+.+++++++|+ .|||+|++ + .|..+++
T Consensus 60 --~~~~~~~--~~vD~Vf~alP~~~~~~~v~~a~~aG~--~VID~S~~fR~~~~~~~~~~y~~~~~~~~~~~~~~~~lpe 133 (343)
T PRK00436 60 --PLDPEIL--AGADVVFLALPHGVSMDLAPQLLEAGV--KVIDLSADFRLKDPEVYEKWYGFEHAAPELLKEAVYGLPE 133 (343)
T ss_pred --cCCHHHh--cCCCEEEECCCcHHHHHHHHHHHhCCC--EEEECCcccCCCCchhhHHhcCCCCCCchhhcCceeecCc
Confidence 2222222 479999999999999999999999998 89999886 1 2344455
Q ss_pred cChhccCCCCCeEEcCCcchhhhHhHHHHHHhhcCee--EEEEEEEeecCCccc-ccCCCCCccccCcccccceeeeccC
Q 022491 140 VNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIV--EGLMTTVHSITATQK-TVDGPSMKDWRGGRAASFNIIPSST 216 (296)
Q Consensus 140 vn~~~l~~~~~iIs~p~C~~tal~~~l~~L~~~~gi~--~~~~~~v~a~sg~~~-~~d~~~~~~~~~~r~~~~ni~P~~~ 216 (296)
+|+++++ +.++||||||++|+++++|+||++.++|+ +..+++++++||+|+ .++..+ ...+.+.-.++|++| +
T Consensus 134 ~~~~~i~-~~~iIanPgC~~t~~~l~L~PL~~~~~i~~~~i~v~~~~g~SGaG~~~~~~~~-~~~~~~~~~~y~~~~--h 209 (343)
T PRK00436 134 LNREEIK-GARLIANPGCYPTASLLALAPLLKAGLIDPDSIIIDAKSGVSGAGRKASEGTL-FSEVNENLRPYKVGG--H 209 (343)
T ss_pred cCHHHhc-CCCEEECCCCHHHHHHHHHHHHHHcCCCCCCCEEEEEEEecccCCCCcccccc-chhhcCCeeecccCC--C
Confidence 5678887 57999999999999999999999988887 789999999999985 344332 122233333555555 4
Q ss_pred ChhhHHHHhccccCCceeEEEEEeeeCceEEEEEEEEeecCCCHHHHHHHHHHhhcC
Q 022491 217 GAAKAVGKVLPALNGKLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEG 273 (296)
Q Consensus 217 g~~~~~~~~~pel~~~v~~~~~~VP~~~g~~~~~~~~l~~~~~~~ev~~~~~~~~~~ 273 (296)
.|.+|+.+++..+.++++|+|+|||++|||+.++|++++++++.+|++++|+++|++
T Consensus 210 ~h~~Ei~~~l~~~~~~v~~t~~~vPv~~G~~~tv~v~~~~~~~~~~~~~~~~~~y~~ 266 (343)
T PRK00436 210 RHTPEIEQELSALAGEVSFTPHLVPMTRGILATIYARLKDPVTAEDVRAAYEEFYAD 266 (343)
T ss_pred CCHHHHHHHHHHhcCCEEEEeEEecccCcEEEEEEEEeCCCCCHHHHHHHHHHHhCC
Confidence 467787777765533699999999999999999999999999999999999999976
No 35
>TIGR01745 asd_gamma aspartate-semialdehyde dehydrogenase, gamma-proteobacterial.
Probab=100.00 E-value=2.3e-35 Score=271.92 Aligned_cols=234 Identities=15% Similarity=0.192 Sum_probs=179.5
Q ss_pred eEEEEEec-CHHHHHHHHHHHcCCCcE---EEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEE
Q 022491 7 IKIGINGF-GRIGRLVARVALQRDDVE---LVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVF 82 (296)
Q Consensus 7 i~vgI~G~-G~iG~~l~r~l~~~p~~e---lv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~ 82 (296)
+||||+|+ |.+|++++++|.+|++|. +..+.+. ++.+ +.+.++++.+.+.
T Consensus 1 ~~VavvGATG~VG~~ll~~L~~e~~fp~~~~~~~ss~-~s~g-------------------------~~~~f~~~~~~v~ 54 (366)
T TIGR01745 1 KNVGLVGWRGMVGSVLMQRMQEERDFDAIRPVFFSTS-QLGQ-------------------------AAPSFGGTTGTLQ 54 (366)
T ss_pred CeEEEEcCcCHHHHHHHHHHHhCCCCccccEEEEEch-hhCC-------------------------CcCCCCCCcceEE
Confidence 47999999 999999999999887665 3333322 1221 1233334433333
Q ss_pred ecCCCCCC-CcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCCCC-----CCCeEEcccChhccCC--CCCe--E
Q 022491 83 GFRNPEEI-PWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSK-----DAPMFVVGVNEKEYKP--ELDI--V 152 (296)
Q Consensus 83 ~~~d~~~i-~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~~~-----d~~~~v~gvn~~~l~~--~~~i--I 152 (296)
+.++. +| .++|+||+|+|...++++++.+.++|+..+|||++|. |+|++|+++|++.+.. ...+ |
T Consensus 55 ---~~~~~~~~--~~vDivffa~g~~~s~~~~p~~~~aG~~~~VIDnSSa~Rmd~dVPLVVPeVN~~~i~~~~~~gi~~i 129 (366)
T TIGR01745 55 ---DAFDIDAL--KALDIIITCQGGDYTNEIYPKLRESGWQGYWIDAASSLRMKDDAVIILDPVNQDVITDGLNNGIRTF 129 (366)
T ss_pred ---cCcccccc--cCCCEEEEcCCHHHHHHHHHHHHhCCCCeEEEECChhhhcCCCCCEEeCCcCHHHHHhHHhCCcCeE
Confidence 23232 34 5899999999999999999999999943389999986 5999999999988763 2456 8
Q ss_pred EcCCcchhhhHhHHHHHHhhcCeeEEEEEEEeecCCccc-cc-----------C--------CC----------------
Q 022491 153 SNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQK-TV-----------D--------GP---------------- 196 (296)
Q Consensus 153 s~p~C~~tal~~~l~~L~~~~gi~~~~~~~v~a~sg~~~-~~-----------d--------~~---------------- 196 (296)
+||+|+|+.++++|+||++.|+|++..++|||++||+|+ .+ . ..
T Consensus 130 anPNCst~~l~~aL~pL~~~~~i~~v~VsTyQAvSGAG~~g~~eL~~Qt~~l~~~~~~~~~~~~~~il~~~~~~~~~~~~ 209 (366)
T TIGR01745 130 VGGNCTVSLMLMSLGGLFANDLVEWVSVATYQAASGGGARHMRELLTQMGHLYGHVEDELATPSSAILDIERKVTKLTRS 209 (366)
T ss_pred ECcCHHHHHHHHHHHHHHhccCccEEEEEechhhhhcCHHHHHHHHHHHHHHhccccccccccchhhhhhcccccccccc
Confidence 999999999999999999999999999999999999982 11 1 00
Q ss_pred -CCccccCcccccceeeecc-----CChhhHHH-------Hhccc-cCCceeEEEEEeeeCceEEEEEEEEeecCCCHHH
Q 022491 197 -SMKDWRGGRAASFNIIPSS-----TGAAKAVG-------KVLPA-LNGKLTGMSFRVPTVDVSVVDLTVRLEKEATYEE 262 (296)
Q Consensus 197 -~~~~~~~~r~~~~ni~P~~-----~g~~~~~~-------~~~pe-l~~~v~~~~~~VP~~~g~~~~~~~~l~~~~~~~e 262 (296)
......+++++++|++|+. +|+++|+. |++.. -.-+++.||+||||++||...++++++++++.++
T Consensus 210 ~~~~~~~fp~~iafNvIP~Ig~~~~~g~t~EE~K~~~EtrKILg~~~~l~VsaTcVRVPV~~gHs~sv~ve~~~~vs~e~ 289 (366)
T TIGR01745 210 GELPVDNFGVPLAGSLIPWIDKQLDNGQSREEWKGQAETNKILGTSSTIPVDGLCVRIGALRCHSQAFTIKLKKDVSLET 289 (366)
T ss_pred CCCCcccCCCcccccccCcCCCccCCCCcHHHHHHHHHHHHHhCCCCCCcEEEEEEecceeccEEEEEEEEECCCCCHHH
Confidence 0013346788999999998 35656655 45532 1124899999999999999999999999999999
Q ss_pred HHHHHHHhh
Q 022491 263 IKNAIKEES 271 (296)
Q Consensus 263 v~~~~~~~~ 271 (296)
++++|+++.
T Consensus 290 i~~~L~~~~ 298 (366)
T TIGR01745 290 IEEIIRAHN 298 (366)
T ss_pred HHHHHHhCC
Confidence 999999864
No 36
>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional
Probab=100.00 E-value=5.5e-35 Score=265.68 Aligned_cols=218 Identities=13% Similarity=0.084 Sum_probs=165.7
Q ss_pred CeeEEEEEec-CHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEe
Q 022491 5 KKIKIGINGF-GRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFG 83 (296)
Q Consensus 5 m~i~vgI~G~-G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~ 83 (296)
||+||||+|+ ||+|++|+|+|.+||+++++++.+. ... . +
T Consensus 1 ~~~~VaIvGAtGy~G~eLlrlL~~hp~~~l~~~~s~--~~~---------~-----------------~----------- 41 (313)
T PRK11863 1 MKPKVFIDGEAGTTGLQIRERLAGRSDIELLSIPEA--KRK---------D-----------------A----------- 41 (313)
T ss_pred CCcEEEEECCCCHHHHHHHHHHhcCCCeEEEEEecC--CCC---------c-----------------c-----------
Confidence 5799999999 9999999999999999999999754 110 0 0
Q ss_pred cCCCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCCCC-----CCCeEEcccCh---hccCCCCCeEEcC
Q 022491 84 FRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSK-----DAPMFVVGVNE---KEYKPELDIVSNA 155 (296)
Q Consensus 84 ~~d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~~~-----d~~~~v~gvn~---~~l~~~~~iIs~p 155 (296)
.+.++ .| .++|+||+|+|++.++++++++.++|+ +|||+|++ +.|..++++|+ +.++ ++++||||
T Consensus 42 -~~~~~-~~--~~~DvvFlalp~~~s~~~~~~~~~~g~--~VIDlSadfRl~~~~~yglPEvn~~~~~~i~-~~~~IanP 114 (313)
T PRK11863 42 -AARRE-LL--NAADVAILCLPDDAAREAVALIDNPAT--RVIDASTAHRTAPGWVYGFPELAPGQRERIA-AAKRVANP 114 (313)
T ss_pred -cCchh-hh--cCCCEEEECCCHHHHHHHHHHHHhCCC--EEEECChhhhcCCCCeEEcCccCHHHHHHhh-cCCeEEcC
Confidence 01112 23 479999999999999999999999999 79999987 24444445543 3454 68999999
Q ss_pred CcchhhhHhHHHHHHhhcCeeEEEEEEEeecCC---cccccCCCCCccccC-cccccceeeecc----CChhhHHHHhcc
Q 022491 156 SCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITA---TQKTVDGPSMKDWRG-GRAASFNIIPSS----TGAAKAVGKVLP 227 (296)
Q Consensus 156 ~C~~tal~~~l~~L~~~~gi~~~~~~~v~a~sg---~~~~~d~~~~~~~~~-~r~~~~ni~P~~----~g~~~~~~~~~p 227 (296)
|||+|+++++|+||.+...+++...++++++|| +|+..... ... --....|++||. |.|.+|+.+++.
T Consensus 115 gC~~Ta~~laL~PL~~~~li~~~~~i~i~a~SG~SGAG~~~~~~----~~~~~~~~~~n~~~Y~~~~~HrH~pEi~~~l~ 190 (313)
T PRK11863 115 GCYPTGAIALLRPLVDAGLLPADYPVSINAVSGYSGGGKAMIAA----YEAAPDGKAPAFRLYGLGLAHKHLPEMQAHAG 190 (313)
T ss_pred CcHHHHHHHHHHHHHHcCCcccCceEEEEEccccccCCccchHH----HhhhhhhhccCeeeccCCcCCcchHHHHHHhc
Confidence 999999999999999975565544578888864 44321110 000 011345778877 446777777776
Q ss_pred ccCCceeEEEEEeeeCceEEEEEEEEe---ecCCCHHHHHHHHHHhhcC
Q 022491 228 ALNGKLTGMSFRVPTVDVSVVDLTVRL---EKEATYEEIKNAIKEESEG 273 (296)
Q Consensus 228 el~~~v~~~~~~VP~~~g~~~~~~~~l---~~~~~~~ev~~~~~~~~~~ 273 (296)
.+ -++.|+++.+|++|||++|+|+++ +++++.+|++++|+++|++
T Consensus 191 ~~-~~~~F~Phl~p~~rGil~Ti~~~~~~~~~~~~~~~i~~~~~~~Y~~ 238 (313)
T PRK11863 191 LA-RRPIFTPSVGNFRQGMLVTVPLHLRLLPGGPTAEDLHAALADHYAG 238 (313)
T ss_pred cc-cCcEEEeeEccccCcEEEEEEEEecccCCCCCHHHHHHHHHHHcCC
Confidence 54 347899999999999999999997 8889999999999999986
No 37
>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form. This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment.
Probab=100.00 E-value=2.8e-34 Score=259.38 Aligned_cols=218 Identities=12% Similarity=0.101 Sum_probs=164.8
Q ss_pred eEEEEEec-CHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEecC
Q 022491 7 IKIGINGF-GRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFR 85 (296)
Q Consensus 7 i~vgI~G~-G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~~ 85 (296)
.||+|+|+ ||+|.||+|+|.+||++|++.+.+. ... +. .
T Consensus 2 ~~v~IvGasGy~G~el~rlL~~HP~~el~~l~s~-~~~---------~~------------------------------~ 41 (310)
T TIGR01851 2 PKVFIDGEAGTTGLQIRERLSGRDDIELLSIAPD-RRK---------DA------------------------------A 41 (310)
T ss_pred CeEEEECCCChhHHHHHHHHhCCCCeEEEEEecc-ccc---------Cc------------------------------C
Confidence 48999999 9999999999999999999999765 110 10 0
Q ss_pred CCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCCCCC--CCeEEccc---Ch---hccCCCCCeEEcCCc
Q 022491 86 NPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKD--APMFVVGV---NE---KEYKPELDIVSNASC 157 (296)
Q Consensus 86 d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~~~d--~~~~v~gv---n~---~~l~~~~~iIs~p~C 157 (296)
+++++ ..++|+||+|+|++.++++++.+.++|+ +|||+|++- .+.++||+ |+ ++++ ++++||||||
T Consensus 42 ~~~~~---~~~~D~vFlalp~~~s~~~~~~~~~~g~--~VIDlSadfRl~~~~~yglPEln~~~~~~i~-~a~lIAnPgC 115 (310)
T TIGR01851 42 ERAKL---LNAADVAILCLPDDAAREAVSLVDNPNT--CIIDASTAYRTADDWAYGFPELAPGQREKIR-NSKRIANPGC 115 (310)
T ss_pred CHhHh---hcCCCEEEECCCHHHHHHHHHHHHhCCC--EEEECChHHhCCCCCeEEccccCHHHHHhhc-cCCEEECCCC
Confidence 12222 2478999999999999999999989999 799999871 33455555 42 3454 7899999999
Q ss_pred chhhhHhHHHHHHhhcCeeEEEEEEEeecCC---cccc-cCCCCCccccCcccccceeeecc----CChhhHHHHhcccc
Q 022491 158 TTNCLAPLAKVIHDKFGIVEGLMTTVHSITA---TQKT-VDGPSMKDWRGGRAASFNIIPSS----TGAAKAVGKVLPAL 229 (296)
Q Consensus 158 ~~tal~~~l~~L~~~~gi~~~~~~~v~a~sg---~~~~-~d~~~~~~~~~~r~~~~ni~P~~----~g~~~~~~~~~pel 229 (296)
|+|+++++|+||.+...+++...++++++|| +|+. .+..+. ..++. ....|+.||. |.|.+|+++++..+
T Consensus 116 ~aTa~~LaL~PL~~~~li~~~~~~~~~a~SG~SGAGr~~~~~l~~-q~~~~-e~~~~~~~Y~~~~~HrH~pEi~q~l~~~ 193 (310)
T TIGR01851 116 YPTGFIALMRPLVEAGILPADFPITINAVSGYSGGGKAMIADYEQ-GSADN-PSLQPFRIYGLALTHKHLPEMRVHSGLA 193 (310)
T ss_pred HHHHHHHHHHHHHHcCCccccceEEEEeccccCccChhhhHHhhh-cccch-hhccCceeccCCCCCCcHHHHHHHhCCC
Confidence 9999999999999986665554688999987 4432 221110 00000 1223555554 56778888777544
Q ss_pred CCceeEEEEEeeeCceEEEEEEEEe---ecCCCHHHHHHHHHHhhcC
Q 022491 230 NGKLTGMSFRVPTVDVSVVDLTVRL---EKEATYEEIKNAIKEESEG 273 (296)
Q Consensus 230 ~~~v~~~~~~VP~~~g~~~~~~~~l---~~~~~~~ev~~~~~~~~~~ 273 (296)
-++.|+++.+|++||+++|+|+++ ++.++.+|++++|+++|++
T Consensus 194 -~~v~FtPhl~p~~RGil~Ti~~~l~~~~~~~~~~~~~~~~~~~Y~~ 239 (310)
T TIGR01851 194 -LPPIFTPAVGNFAQGMAVTIPLHLQTLASKVSPADIHAALADYYQG 239 (310)
T ss_pred -CCEEEEeEEccccCcEEEEEEEEeccCCCCCCHHHHHHHHHHHHCC
Confidence 358999999999999999999999 8889999999999999986
No 38
>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase
Probab=100.00 E-value=1.1e-33 Score=264.84 Aligned_cols=235 Identities=14% Similarity=0.128 Sum_probs=167.9
Q ss_pred CeeEEEEEec-CHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEe
Q 022491 5 KKIKIGINGF-GRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFG 83 (296)
Q Consensus 5 m~i~vgI~G~-G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~ 83 (296)
|++||+|+|+ |++|++++|+|.+||+++|+.+.+. .+.+. . +...++++. + + ....+.
T Consensus 37 ~~~kVaIvGATG~vG~eLlrlL~~hP~~el~~l~s~-~saG~---~--i~~~~~~l~-~------~--------~~~~~~ 95 (381)
T PLN02968 37 EKKRIFVLGASGYTGAEVRRLLANHPDFEITVMTAD-RKAGQ---S--FGSVFPHLI-T------Q--------DLPNLV 95 (381)
T ss_pred cccEEEEECCCChHHHHHHHHHHhCCCCeEEEEECh-hhcCC---C--chhhCcccc-C------c--------ccccee
Confidence 4579999999 9999999999999999999999875 33321 1 233343332 1 0 011111
Q ss_pred cCCCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCCCC---C----------CCe--------EEcccC-
Q 022491 84 FRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSK---D----------APM--------FVVGVN- 141 (296)
Q Consensus 84 ~~d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~~~---d----------~~~--------~v~gvn- 141 (296)
+.+..+| .++|+||+|+|+..++++++.+ ++|+ +|||++++ + .|. .+||++
T Consensus 96 --~~~~~~~--~~~DvVf~Alp~~~s~~i~~~~-~~g~--~VIDlSs~fRl~~~~~y~~~y~~p~~~pe~~~~~~yglpE 168 (381)
T PLN02968 96 --AVKDADF--SDVDAVFCCLPHGTTQEIIKAL-PKDL--KIVDLSADFRLRDIAEYEEWYGHPHRAPELQKEAVYGLTE 168 (381)
T ss_pred --cCCHHHh--cCCCEEEEcCCHHHHHHHHHHH-hCCC--EEEEcCchhccCCcccchhccCCCCCCcccchhhhcccch
Confidence 1222123 4799999999999999999985 7887 78999886 1 232 356653
Q ss_pred --hhccCCCCCeEEcCCcchhhhHhHHHHHHhhcCe--eEEEEEEEeecCCcccccCCCCCccccCcccccceeeecc--
Q 022491 142 --EKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGI--VEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSS-- 215 (296)
Q Consensus 142 --~~~l~~~~~iIs~p~C~~tal~~~l~~L~~~~gi--~~~~~~~v~a~sg~~~~~d~~~~~~~~~~r~~~~ni~P~~-- 215 (296)
+++++ ++++|||||||+|+++++|+||++.++| +...+++++++||+|+.....+.... ...|+.|+.
T Consensus 169 ~~r~~i~-~~~iIAnPgC~~t~~~laL~PL~~~~~i~~~~iiv~a~sgvSGAG~~~~~~~l~~e-----~~~n~~~y~~~ 242 (381)
T PLN02968 169 LQREEIK-SARLVANPGCYPTGIQLPLVPLVKAGLIEPDNIIIDAKSGVSGAGRGAKEANLYTE-----IAEGIGAYGVT 242 (381)
T ss_pred hCHHHhc-CCCEEECCCCHHHHHHHHHHHHHHcCCCCCceEEEEEeeeccccCcccchhhhHHH-----hcccceeeccC
Confidence 56666 6889999999999999999999999999 66889999999999854332211111 112333433
Q ss_pred -CChhhHHHHhcccc---CCceeEEEEEeeeCceEEEEEEEEeecCCCHHHHHHHHHHhhcC
Q 022491 216 -TGAAKAVGKVLPAL---NGKLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEG 273 (296)
Q Consensus 216 -~g~~~~~~~~~pel---~~~v~~~~~~VP~~~g~~~~~~~~l~~~~~~~ev~~~~~~~~~~ 273 (296)
+.|..|+++.+-.+ .-+++|||++||++|||+.++|++++++++.+|++++|+++|++
T Consensus 243 ~h~h~pEie~~~~~~~~~~~~v~ft~~~vPv~rG~~~tv~v~~~~~~~~~~v~~~~~~~y~~ 304 (381)
T PLN02968 243 RHRHVPEIEQGLADAAGSKVTPSFTPHLMPMSRGMQSTVYVHYAPGVTAEDLHQHLKERYEG 304 (381)
T ss_pred CCCCcchHHHHHHHHhCCCCCEEEEeEEeeccccEEEEEEEEeCCCCCHHHHHHHHHHhCCC
Confidence 33444443322111 22489999999999999999999999999999999999998765
No 39
>smart00846 Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain. GAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. N-terminal domain is a Rossmann NAD(P) binding fold.
Probab=100.00 E-value=5.1e-33 Score=228.20 Aligned_cols=148 Identities=54% Similarity=0.921 Sum_probs=137.2
Q ss_pred eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEecCC
Q 022491 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRN 86 (296)
Q Consensus 7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~~d 86 (296)
+||||+|+|++|+.++|.+.+++++++++++++ .++++++|+|+|||+|+.|+ +.+..+++ .+.++|+.+++++..+
T Consensus 1 ikv~I~G~GriGr~v~~~~~~~~~~~lvai~d~-~~~~~~a~ll~~Ds~hg~~~-~~v~~~~~-~l~i~g~~i~~~~~~~ 77 (149)
T smart00846 1 IKVGINGFGRIGRLVLRALLERPDIEVVAINDL-TDPETLAHLLKYDSVHGRFP-GEVEVDED-GLIVNGKKIKVLAERD 77 (149)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCEEEEeecC-CCHHHHHHHhcccCCCCCCC-CcEEEeCC-EEEECCEEEEEEecCC
Confidence 489999999999999999999999999999997 78999999999999999998 77766555 5999999999999999
Q ss_pred CCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCCCCC-CCeEEcccChhccCCCCCeEEcCCc
Q 022491 87 PEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKD-APMFVVGVNEKEYKPELDIVSNASC 157 (296)
Q Consensus 87 ~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~~~d-~~~~v~gvn~~~l~~~~~iIs~p~C 157 (296)
|.+++|.+.++|+|+||||.|.+++.++.|+++|+|+|++++++++ .+++|||+|++.+++..++|||+||
T Consensus 78 p~~~~w~~~gvDiVie~tG~f~~~~~~~~hl~~GakkViisap~~~~~~t~V~GvN~~~~~~~~~iiS~aSC 149 (149)
T smart00846 78 PANLPWKELGVDIVVECTGKFTTREKASAHLKAGAKKVIISAPAKDADKTFVYGVNHDEYDPEDHIVSNASC 149 (149)
T ss_pred hHHCcccccCCeEEEeccccccchHHHHHHHHcCCCEEEeCCCCCCCCceEEEeechHHcCCCCCEEEcCCC
Confidence 9999999999999999999999999999999999999999999887 4689999999999855669999999
No 40
>PF02800 Gp_dh_C: Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain; InterPro: IPR020829 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) plays an important role in glycolysis and gluconeogenesis [] by reversibly catalysing the oxidation and phosphorylation of D-glyceraldehyde-3-phosphate to 1,3-diphospho-glycerate. The enzyme exists as a tetramer of identical subunits, each containing 2 conserved functional domains: an NAD-binding domain, and a highly conserved catalytic domain []. The enzyme has been found to bind to actin and tropomyosin, and may thus have a role in cytoskeleton assembly. Alternatively, the cytoskeleton may provide a framework for precise positioning of the glycolytic enzymes, thus permitting efficient passage of metabolites from enzyme to enzyme []. GAPDH displays diverse non-glycolytic functions as well, its role depending upon its subcellular location. For instance, the translocation of GAPDH to the nucleus acts as a signalling mechanism for programmed cell death, or apoptosis []. The accumulation of GAPDH within the nucleus is involved in the induction of apoptosis, where GAPDH functions in the activation of transcription. The presence of GAPDH is associated with the synthesis of pro-apoptotic proteins like BAX, c-JUN and GAPDH itself. GAPDH has been implicated in certain neurological diseases: GAPDH is able to bind to the gene products from neurodegenerative disorders such as Huntington's disease, Alzheimer's disease, Parkinson's disease and Machado-Joseph disease through stretches encoded by their CAG repeats. Abnormal neuronal apoptosis is associated with these diseases. Propargylamines such as deprenyl increase neuronal survival by interfering with apoptosis signalling pathways via their binding to GAPDH, which decreases the synthesis of pro-apoptotic proteins []. This entry represents the C-terminal domain which is a mixed alpha/antiparallel beta fold.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 1DSS_R 1IHY_C 1CRW_R 1IHX_B 1SZJ_R 3HJA_D 2YYY_B 1OBF_O 3PYM_A 2VYN_D ....
Probab=100.00 E-value=6e-33 Score=229.74 Aligned_cols=134 Identities=65% Similarity=0.992 Sum_probs=128.7
Q ss_pred hHhHHHHHHhhcCeeEEEEEEEeecCCcccccCCCCCccccCcccccceeeeccCChhhHHHHhccccCCceeEEEEEee
Q 022491 162 LAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVP 241 (296)
Q Consensus 162 l~~~l~~L~~~~gi~~~~~~~v~a~sg~~~~~d~~~~~~~~~~r~~~~ni~P~~~g~~~~~~~~~pel~~~v~~~~~~VP 241 (296)
|+|++++|++.|||+++.+|++|+++..|+.+|+++ +++|+||.+++|++|..+++++++.+++|+|+++++++++|||
T Consensus 1 Lap~~k~l~~~fgI~~~~~Ttih~~t~~Q~~~D~~~-~d~rrgr~a~~niip~~t~aa~av~~VlP~L~gki~g~a~rVP 79 (157)
T PF02800_consen 1 LAPVLKVLDDNFGIEKGRMTTIHAYTDPQKLVDGPH-KDWRRGRAAAQNIIPTSTGAAKAVGKVLPELNGKITGMAVRVP 79 (157)
T ss_dssp HHHHHHHHHHHHEEEEEEEEEEEESSTTSBSSSS---SSTGTTSBTTTSSEEEEESHHHHHHHHSGGGTTTEEEEEEEES
T ss_pred CcchhhhhhhhcCEEEEEEEEEeccCCccceeeecc-ccccccccccccccccccccchhhhhhhhhccCcceeeEEeee
Confidence 689999999999999999999999999999999999 7999999999999999999999999999999999999999999
Q ss_pred eCceEEEEEEEEeecCCCHHHHHHHHHHhhcCcCCCcccccCCceeeecCCCCCC
Q 022491 242 TVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSR 296 (296)
Q Consensus 242 ~~~g~~~~~~~~l~~~~~~~ev~~~~~~~~~~~~~~~~~~~~~~~vs~d~~~~~~ 296 (296)
++.||+++++++++++++.|||+++|+++++++++|+++|+|+|+||+||+|++|
T Consensus 80 t~~~s~~dl~~~l~k~~t~eeV~~~~~~aa~~~~~gil~~~~~~~vS~D~~~~~~ 134 (157)
T PF02800_consen 80 TPNVSLHDLTVELEKPVTKEEVNEALKQAARGPLKGILGYTEDPLVSSDFNGDRH 134 (157)
T ss_dssp SSSEEEEEEEEEESSSS-HHHHHHHHHHHHHTTTTTTEEEEHSHHHGGGGTTGCS
T ss_pred ecccCceEEEEecccchhhhhhhhhhhhhhHhhhhhhheecccceEEeccCCCce
Confidence 9999999999999999999999999999999999999999999999999999986
No 41
>KOG4354 consensus N-acetyl-gamma-glutamyl-phosphate reductase [Amino acid transport and metabolism]
Probab=99.92 E-value=3.3e-25 Score=189.58 Aligned_cols=233 Identities=12% Similarity=0.125 Sum_probs=163.3
Q ss_pred eEEEEEec-CHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEecC
Q 022491 7 IKIGINGF-GRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFR 85 (296)
Q Consensus 7 i~vgI~G~-G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~~ 85 (296)
+|||.+|+ ||.|++++|++.+||.+|+..+.++ .-.++ -+ . .|++.. +.+.+ ++..
T Consensus 20 ~rv~LlGArGYTGknlv~Lin~HPylevthvssr-el~Gq---kl--~-~ytk~e-----------iqy~~-----lst~ 76 (340)
T KOG4354|consen 20 IRVGLLGARGYTGKNLVRLINNHPYLEVTHVSSR-ELAGQ---KL--E-VYTKLE-----------IQYAD-----LSTV 76 (340)
T ss_pred ceEEEEeccccchhhHHHHhcCCCceEEEeeehh-hhcCC---cc--c-Ccchhh-----------eeecc-----cchh
Confidence 89999999 9999999999999999999999876 22221 11 1 343332 11100 0000
Q ss_pred CCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCCCCC--CC--eEEcccC----hhccCCCCCeEEcCCc
Q 022491 86 NPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKD--AP--MFVVGVN----EKEYKPELDIVSNASC 157 (296)
Q Consensus 86 d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~~~d--~~--~~v~gvn----~~~l~~~~~iIs~p~C 157 (296)
|...+.- ...+|..+.++|..+-+.++...-...-|-++||.+++- .| .++||++ ++.|+ ++++||||||
T Consensus 77 D~~klee-~~avd~wvmaLPn~vckpfv~~~~s~~gks~iidlsad~rf~p~~~w~YGLpElndRe~i~-na~~iaNPGC 154 (340)
T KOG4354|consen 77 DAVKLEE-PHAVDHWVMALPNQVCKPFVSLTESSDGKSRIIDLSADWRFQPHKEWVYGLPELNDREDIK-NARLIANPGC 154 (340)
T ss_pred hHHHhhc-CCceeeeeeecchhhHHHHHHHHhhcCCceeeeecchhhcCCcchheeecCcccccHHHHh-hhhhccCCCc
Confidence 1111110 135788888899888877777666666677899998872 55 8999996 67787 8999999999
Q ss_pred chhhhHhHHHHHHhhcCeeEEEEEEEeecCCcccccCCCCCccccCcccccceeeecc---CChhhHHHHhccccCCcee
Q 022491 158 TTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSS---TGAAKAVGKVLPALNGKLT 234 (296)
Q Consensus 158 ~~tal~~~l~~L~~~~gi~~~~~~~v~a~sg~~~~~d~~~~~~~~~~r~~~~ni~P~~---~g~~~~~~~~~pel~~~v~ 234 (296)
|+|...+.|-||.+..... ..+.-+-.+||+|.....+ + .-.-++.|++|+. +-|.+|+.+ .++..+.
T Consensus 155 YaTgsQl~l~Pllk~i~g~-p~ifgvSGySGAGtkpspk---N--d~~~l~nnlipY~ltdHiHerEIs~---r~k~~Va 225 (340)
T KOG4354|consen 155 YATGSQLPLVPLLKAILGK-PEIFGVSGYSGAGTKPSPK---N--DYSELANNLIPYGLTDHIHEREISQ---RSKVTVA 225 (340)
T ss_pred ccccCcccchHHHHHhcCC-cceeeeccccCCCCCCCCc---c--CHHHHhcCCccccccccchhHhHHH---hhCCcee
Confidence 9999888888877643222 1233334455554322111 1 2233667899988 445566555 2344689
Q ss_pred EEEEEeeeCceEEEEEEEEeecCCCHHHHHHHHHHhhcC
Q 022491 235 GMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEG 273 (296)
Q Consensus 235 ~~~~~VP~~~g~~~~~~~~l~~~~~~~ev~~~~~~~~~~ 273 (296)
|+++..|.++|+..|+++.+++.++.+|++++|+..|++
T Consensus 226 F~PHv~qwfqGi~lTi~vpmkksv~~~elr~lyk~~Yed 264 (340)
T KOG4354|consen 226 FTPHVMQWFQGIQLTIYVPMKKSVRTEELRQLYKTSYED 264 (340)
T ss_pred echhHHHHhhhceEEEEEeecCcccHHHHHHHHHhhccC
Confidence 999999999999999999999999999999999999987
No 42
>KOG4777 consensus Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=99.85 E-value=2.9e-21 Score=166.58 Aligned_cols=238 Identities=18% Similarity=0.230 Sum_probs=171.0
Q ss_pred EEE-EEec-CHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEecC
Q 022491 8 KIG-INGF-GRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFR 85 (296)
Q Consensus 8 ~vg-I~G~-G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~~ 85 (296)
|+| |+|+ |.+|++++-+|..||+++|.-+....++++. +|. .-++|++.....+. -.++.+ .+.
T Consensus 5 k~a~vlGaTGaVGQrFi~lLsdhP~f~ikvLgAS~RSAGK-----~ya-~a~~wkqt~~lp~~-------~~e~~V-~ec 70 (361)
T KOG4777|consen 5 KSAPVLGATGAVGQRFISLLSDHPYFSIKVLGASKRSAGK-----RYA-FAGNWKQTDLLPES-------AHEYTV-EEC 70 (361)
T ss_pred cccceeeccchhHHHHHHHhccCCcceeeeecccccccCC-----ceE-ecccchhcccccch-------hhhhhH-hhc
Confidence 565 9999 9999999999999999999888544355542 221 12445411100000 012222 234
Q ss_pred CCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCCCC-----CCCeEEcccChhccCC-----------CC
Q 022491 86 NPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSK-----DAPMFVVGVNEKEYKP-----------EL 149 (296)
Q Consensus 86 d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~~~-----d~~~~v~gvn~~~l~~-----------~~ 149 (296)
+++.+ .++|+||+.++...+.+.-+.+.++|. +|+|++.. ++|++|+.+|+|+++- ..
T Consensus 71 ~~~~F----~ecDIvfsgldad~ageiek~f~eag~--iiVsNaknyRre~~VPLvvP~VNpehld~ik~~~~~~k~~~G 144 (361)
T KOG4777|consen 71 TADSF----NECDIVFSGLDADIAGEIEKLFAEAGT--IIVSNAKNYRREDGVPLVVPEVNPEHLDGIKVGLDTGKMGKG 144 (361)
T ss_pred Chhhc----ccccEEEecCCchhhhhhhHHHHhcCe--EEEeCchhcccCCCCceEecccCHHHhhhheeccccCCCCCc
Confidence 56655 599999999999999999999999999 99998765 4999999999988751 12
Q ss_pred CeEEcCCcchhhhHhHHHHHHhhcC-eeEEEEEEEeecCCcccccCCCCCccccCcccccceeeeccCChh----hHHHH
Q 022491 150 DIVSNASCTTNCLAPLAKVIHDKFG-IVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAA----KAVGK 224 (296)
Q Consensus 150 ~iIs~p~C~~tal~~~l~~L~~~~g-i~~~~~~~v~a~sg~~~~~d~~~~~~~~~~r~~~~ni~P~~~g~~----~~~~~ 224 (296)
-||+|++|.|..+...|+||++.|| |.+-.++|+|++||+|-.--. -+-....|++|...|.. .+..+
T Consensus 145 ~iI~nsNCSTa~~v~plkpL~~~fgpi~~~~v~t~QAiSGAG~apgv-------~~vdildnilp~iggee~k~ewet~k 217 (361)
T KOG4777|consen 145 AIIANSNCSTAICVMPLKPLHHHFGPIKRMVVSTYQAISGAGAAPGV-------ELVDILDNILPGIGGEENKFEWETAK 217 (361)
T ss_pred eEEecCCCCeeeEEeechhHHhhccchhhhhhhhhhhhccCCcCCCc-------hHHHHHHhhcCCCCccchhhhHHHHH
Confidence 4999999999999999999999996 666678899999998632110 11235568888886532 23334
Q ss_pred hccccCC-----------ceeEEEEEeeeCceEEEEEEEEeecC--CCHHHHHHHHHHhhc
Q 022491 225 VLPALNG-----------KLTGMSFRVPTVDVSVVDLTVRLEKE--ATYEEIKNAIKEESE 272 (296)
Q Consensus 225 ~~pel~~-----------~v~~~~~~VP~~~g~~~~~~~~l~~~--~~~~ev~~~~~~~~~ 272 (296)
++-..+. .++..|-|||+..||+..+.++++-+ .+.+++..++.++.-
T Consensus 218 iL~s~n~~i~~~~l~ee~~vsaqcnRv~v~Dgh~~cis~~f~~~~~pa~~qv~~~l~eyv~ 278 (361)
T KOG4777|consen 218 ILFSHNAPILDNGLNEEEMVSAQCNRVIVNDGHVKCISTCFRVPVMPAHAQVVNLLFEYVL 278 (361)
T ss_pred hhhccCCccccccccHHHhhhhhcceeeEecCceEEEEEEeecCCCCcHHHHHHHHHhccC
Confidence 4433221 25567899999999999999999743 378999999887664
No 43
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=99.69 E-value=4.8e-16 Score=140.63 Aligned_cols=154 Identities=18% Similarity=0.115 Sum_probs=110.2
Q ss_pred eeEEEEEecCHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEecC
Q 022491 6 KIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFR 85 (296)
Q Consensus 6 ~i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~~ 85 (296)
++||||+|.|.+|..++..+.+.|+++++++.++..+..- ++....++. + ..+++.+. +
T Consensus 4 klrVAIIGtG~IGt~hm~~l~~~~~velvAVvdid~es~g----la~A~~~Gi-~-----------~~~~~ie~-L---- 62 (302)
T PRK08300 4 KLKVAIIGSGNIGTDLMIKILRSEHLEPGAMVGIDPESDG----LARARRLGV-A-----------TSAEGIDG-L---- 62 (302)
T ss_pred CCeEEEEcCcHHHHHHHHHHhcCCCcEEEEEEeCChhhHH----HHHHHHcCC-C-----------cccCCHHH-H----
Confidence 4899999999999999999988999999999987333111 111111110 0 00000000 0
Q ss_pred CCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCCCC-CCCeEEcccChhccCC--CCCeEEcCCcchhhh
Q 022491 86 NPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSK-DAPMFVVGVNEKEYKP--ELDIVSNASCTTNCL 162 (296)
Q Consensus 86 d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~~~-d~~~~v~gvn~~~l~~--~~~iIs~p~C~~tal 162 (296)
.+..+| .++|+||+|||...+.++++.++++|+ .|||.++. ..|++||++|.+++.. +.++|+||+|.++.+
T Consensus 63 -L~~~~~--~dIDiVf~AT~a~~H~e~a~~a~eaGk--~VID~sPA~~~PlvVP~VN~~~~~~~~~~~iia~p~~ati~~ 137 (302)
T PRK08300 63 -LAMPEF--DDIDIVFDATSAGAHVRHAAKLREAGI--RAIDLTPAAIGPYCVPAVNLDEHLDAPNVNMVTCGGQATIPI 137 (302)
T ss_pred -HhCcCC--CCCCEEEECCCHHHHHHHHHHHHHcCC--eEEECCccccCCcccCcCCHHHHhcccCCCEEECccHHHHHH
Confidence 111123 479999999999999999999999999 88888766 5999999999776653 568999999999999
Q ss_pred HhHHHHHHhhcCeeEEEEEEEeecC
Q 022491 163 APLAKVIHDKFGIVEGLMTTVHSIT 187 (296)
Q Consensus 163 ~~~l~~L~~~~gi~~~~~~~v~a~s 187 (296)
+.+|+|+++ .++.+.. .|+.+.|
T Consensus 138 v~Al~~v~~-~~~~eIv-at~~s~s 160 (302)
T PRK08300 138 VAAVSRVAP-VHYAEIV-ASIASKS 160 (302)
T ss_pred HHHhcccCc-Cceeeee-eeehhhc
Confidence 999999654 3444443 6666665
No 44
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=99.65 E-value=1.4e-16 Score=126.59 Aligned_cols=113 Identities=28% Similarity=0.317 Sum_probs=82.7
Q ss_pred EEEEEec-CHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEecCC
Q 022491 8 KIGINGF-GRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRN 86 (296)
Q Consensus 8 ~vgI~G~-G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~~d 86 (296)
||||+|+ |++|++++|+|.+||+++++.+.++..+.+. ++...++.+. +. .++ .+. ..+
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~-----~~~~~~~~~~-~~------~~~-------~~~-~~~ 60 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGK-----PLSEVFPHPK-GF------EDL-------SVE-DAD 60 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTS-----BHHHTTGGGT-TT------EEE-------BEE-ETS
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCC-----eeehhccccc-cc------cce-------eEe-ecc
Confidence 7999998 9999999999999999999999987442321 2344444333 10 012 121 123
Q ss_pred CCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCCCC-----CCCeEEcccChhccC
Q 022491 87 PEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSK-----DAPMFVVGVNEKEYK 146 (296)
Q Consensus 87 ~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~~~-----d~~~~v~gvn~~~l~ 146 (296)
.+.+ .++|+||+|+|+..+++++++++++|+ +|||++++ +.|..++++|+++++
T Consensus 61 ~~~~----~~~Dvvf~a~~~~~~~~~~~~~~~~g~--~ViD~s~~~R~~~~~~~~~pevn~~~i~ 119 (121)
T PF01118_consen 61 PEEL----SDVDVVFLALPHGASKELAPKLLKAGI--KVIDLSGDFRLDDDVPYGLPEVNREQIK 119 (121)
T ss_dssp GHHH----TTESEEEE-SCHHHHHHHHHHHHHTTS--EEEESSSTTTTSTTSEEE-HHHHHHHHH
T ss_pred hhHh----hcCCEEEecCchhHHHHHHHHHhhCCc--EEEeCCHHHhCCCCCCEEeCCcCHHHHc
Confidence 3333 589999999999999999999999999 89999887 367778888888875
No 45
>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating). Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.
Probab=99.52 E-value=1.1e-13 Score=124.96 Aligned_cols=152 Identities=19% Similarity=0.190 Sum_probs=110.8
Q ss_pred eeEEEEEecCHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEecC
Q 022491 6 KIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFR 85 (296)
Q Consensus 6 ~i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~~ 85 (296)
++||||+|.|++|+.++..+.+.++++++++.++..+...+ .....++ . .. .+.
T Consensus 1 klrVAIIG~G~IG~~h~~~ll~~~~~elvaV~d~d~es~~l----a~A~~~G-----i-------~~--------~~~-- 54 (285)
T TIGR03215 1 KVKVAIIGSGNIGTDLMYKLLRSEHLEMVAMVGIDPESDGL----ARARELG-----V-------KT--------SAE-- 54 (285)
T ss_pred CcEEEEEeCcHHHHHHHHHHHhCCCcEEEEEEeCCcccHHH----HHHHHCC-----C-------CE--------EEC--
Confidence 37999999999999998888888899999999873321111 1111111 0 00 010
Q ss_pred CCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCCCC-CCCeEEcccChhccCC--CCCeEEcCCcchhhh
Q 022491 86 NPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSK-DAPMFVVGVNEKEYKP--ELDIVSNASCTTNCL 162 (296)
Q Consensus 86 d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~~~-d~~~~v~gvn~~~l~~--~~~iIs~p~C~~tal 162 (296)
+.+.+ ....++|+||+|||...+.+++..++++|+ .|+|..+. ..|.+++.+|.++... +.++|++|+|.++.+
T Consensus 55 ~~e~l-l~~~dIDaV~iaTp~~~H~e~a~~al~aGk--~VIdekPa~~~plvvp~VN~~~~~~~~~~~iv~c~~~atip~ 131 (285)
T TIGR03215 55 GVDGL-LANPDIDIVFDATSAKAHARHARLLAELGK--IVIDLTPAAIGPYVVPAVNLDEHLDAPNVNMVTCGGQATIPI 131 (285)
T ss_pred CHHHH-hcCCCCCEEEECCCcHHHHHHHHHHHHcCC--EEEECCccccCCccCCCcCHHHHhcCcCCCEEEcCcHHHHHH
Confidence 22222 112479999999999999999999999998 77776554 5899999999666543 578999999999999
Q ss_pred HhHHHHHHhhcCeeEEEEEEEeecCC
Q 022491 163 APLAKVIHDKFGIVEGLMTTVHSITA 188 (296)
Q Consensus 163 ~~~l~~L~~~~gi~~~~~~~v~a~sg 188 (296)
..+++++++...+ ..+.++++.|+
T Consensus 132 ~~al~r~~d~~~~--~iv~ti~s~S~ 155 (285)
T TIGR03215 132 VAAISRVAPVHYA--EIVASIASRSA 155 (285)
T ss_pred HHHHHHhhccccE--EEEEEEEeecc
Confidence 9999999886644 45567888774
No 46
>PF02774 Semialdhyde_dhC: Semialdehyde dehydrogenase, dimerisation domain; InterPro: IPR012280 This domain contains N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. It also contains the yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a dimerisation domain of semialdehyde dehydrogenase.; GO: 0003942 N-acetyl-gamma-glutamyl-phosphate reductase activity, 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0046983 protein dimerization activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YS4_B 2CVO_C 2HJS_A 2I3A_A 2NQT_A 2I3G_B 3Q0E_B 1MB4_A 3PZR_A 1MC4_A ....
Probab=99.27 E-value=2.1e-11 Score=103.80 Aligned_cols=105 Identities=18% Similarity=0.264 Sum_probs=73.5
Q ss_pred HHHHHhh-cCeeEEEEEEEeecCCcccc-cCC-----------CCCccccCcccccceeeeccCC----hhhHHH---H-
Q 022491 166 AKVIHDK-FGIVEGLMTTVHSITATQKT-VDG-----------PSMKDWRGGRAASFNIIPSSTG----AAKAVG---K- 224 (296)
Q Consensus 166 l~~L~~~-~gi~~~~~~~v~a~sg~~~~-~d~-----------~~~~~~~~~r~~~~ni~P~~~g----~~~~~~---~- 224 (296)
|+||+++ +++++..+++++++||+|+. ++. ............++|++|+..+ |.++.. +
T Consensus 1 L~PL~~~l~~~~~v~v~t~qgvSGAG~~~~~eL~~q~~~~~~~~~~~~~~~~~~i~~N~~py~~~~~h~h~~e~~~el~~ 80 (184)
T PF02774_consen 1 LAPLHKALFGLERVIVDTYQGVSGAGRKGVEELAQQTASLLNGKPPSPGLFPSQIAFNLIPYIGGFEHRHEPEIEEELKM 80 (184)
T ss_dssp HHHHHHTHHHECEEEEEEEEEGGGGCHHHHHHHHHHHHHHHCSSTSTCSSTSSHHTTSEBSCSSTBTTTSHHHBHHHHHH
T ss_pred CcchhhCcCCCcEEEEEEeechhhccHhHHHHHHHhHHhhhccCCCCCCccchhhhcceeEccCCcccCchHHHHHHHHh
Confidence 6899997 99999999999999999863 110 0001223456788999999843 322322 1
Q ss_pred ------hccccCCceeEEEEEeeeCceEEEEEEEEeecCCCHHHHHHHHHHhhcC
Q 022491 225 ------VLPALNGKLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEG 273 (296)
Q Consensus 225 ------~~pel~~~v~~~~~~VP~~~g~~~~~~~~l~~~~~~~ev~~~~~~~~~~ 273 (296)
++... ..++++|+|||++|||+.++|++++ .+..++.++++.+|+.
T Consensus 81 ~~~~~~~l~~~-~~v~~t~~~vPv~rG~~~ti~v~~~--~~~~~~~~~~~~~~~~ 132 (184)
T PF02774_consen 81 IAETRKILGFP-PRVSFTCVRVPVFRGHLATIYVELK--ETPVDVEEIYEAFYKG 132 (184)
T ss_dssp HHHHHHHCTET-TEEEEEEEEESSSSEEEEEEEEEES--SSHHHHHHHHHHHHTS
T ss_pred hccccceeecc-ccccccEEEEeeeeeEceeEEEEec--CCHHHHHHHHHHHhCC
Confidence 22211 2688999999999999999999996 3456666666666655
No 47
>TIGR01921 DAP-DH diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.
Probab=99.16 E-value=2.8e-10 Score=104.27 Aligned_cols=209 Identities=20% Similarity=0.204 Sum_probs=128.0
Q ss_pred eeEEEEEecCHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEecC
Q 022491 6 KIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFR 85 (296)
Q Consensus 6 ~i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~~ 85 (296)
++||||+|+|.+|+.+++.+.++|++||+++.++ .+.+.+. ...+ ++...
T Consensus 3 kIRVgIVG~GnIGr~~a~al~~~pd~ELVgV~dr-~~~~~~~------~~~~-----------------------v~~~~ 52 (324)
T TIGR01921 3 KIRAAIVGYGNLGRSVEKAIQQQPDMELVGVFSR-RGAETLD------TETP-----------------------VYAVA 52 (324)
T ss_pred CcEEEEEeecHHHHHHHHHHHhCCCcEEEEEEcC-CcHHHHh------hcCC-----------------------ccccC
Confidence 4899999999999999999999999999999987 3322111 0000 11111
Q ss_pred CCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCCCCCCCeEEcccC--hhccCC---CCCeEEcCCcchh
Q 022491 86 NPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKDAPMFVVGVN--EKEYKP---ELDIVSNASCTTN 160 (296)
Q Consensus 86 d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~~~d~~~~v~gvn--~~~l~~---~~~iIs~p~C~~t 160 (296)
+.+++ ..++|+|+.|+|...+.+.+.+++++|. -|||... |. ..++ .+.++. ...-+ ++..+
T Consensus 53 d~~e~---l~~iDVViIctPs~th~~~~~~~L~aG~--NVV~s~~---~h--~~~p~~~~~ld~AAk~~g~v---svi~~ 119 (324)
T TIGR01921 53 DDEKH---LDDVDVLILCMGSATDIPEQAPYFAQFA--NTVDSFD---NH--RDIPRHRQVMDAAAKAAGNV---SVIST 119 (324)
T ss_pred CHHHh---ccCCCEEEEcCCCccCHHHHHHHHHcCC--CEEECCC---cc--cCCHHHHHHHHHHHHHcCCE---EEEEC
Confidence 22222 2579999999999999999999999998 6676521 10 0111 122221 11112 22336
Q ss_pred hhHhHHHHHHhhcCeeEEEEEEEeecCCcccccCCCCCccccCcc---cccceeeeccCChhhHHHHhc-cccCCceeEE
Q 022491 161 CLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGR---AASFNIIPSSTGAAKAVGKVL-PALNGKLTGM 236 (296)
Q Consensus 161 al~~~l~~L~~~~gi~~~~~~~v~a~sg~~~~~d~~~~~~~~~~r---~~~~ni~P~~~g~~~~~~~~~-pel~~~v~~~ 236 (296)
.+-|.+..|.+.++ +.++..-..||.+|+.++..+....++-. .+.+.-|| ...++..++ .|.. .++
T Consensus 120 GwDPG~~si~r~~~--ea~lp~g~~yt~wG~g~s~ghs~a~~~~~Gv~~a~~~tip----~~dal~~v~~Ge~~-~l~-- 190 (324)
T TIGR01921 120 GWDPGMFSINRVYG--EAVLPKGQTYTFWGPGLSQGHSDAVRRIDGVKKAVQYTLP----SEDALEKARRGEAP-ELT-- 190 (324)
T ss_pred CCCcChHHHHHHHH--hccCCCCcceeccCCCcCchhhhhhcccCCcccceEEEEe----hHHHHHHHHcCCcc-ccc--
Confidence 68888888877643 44445556677778777755422222222 23455566 234555554 2221 122
Q ss_pred EEEeeeCceEEEEEEEEeecCCCHHHHHHHHHHhh
Q 022491 237 SFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEES 271 (296)
Q Consensus 237 ~~~VP~~~g~~~~~~~~l~~~~~~~ev~~~~~~~~ 271 (296)
....|...+|+.++...+.++|++..++.+
T Consensus 191 -----~~~~h~r~~~vv~e~g~~~~~v~~~i~~~p 220 (324)
T TIGR01921 191 -----GKQTHKRQCFVVLKDGADHERVENEIRTMP 220 (324)
T ss_pred -----cccceeeeEEEEecCCCCHHHHHHHHhhCc
Confidence 223366788888988889999999988643
No 48
>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.
Probab=98.96 E-value=3.8e-09 Score=83.76 Aligned_cols=112 Identities=24% Similarity=0.238 Sum_probs=73.8
Q ss_pred EEEEEec-CHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEecCC
Q 022491 8 KIGINGF-GRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRN 86 (296)
Q Consensus 8 ~vgI~G~-G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~~d 86 (296)
|+||+|+ |++|+.+++.|.++|+++++++.++..+.+. . ....++++. . . .+...+
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~~~~~l~av~~~~~~~~~---~--~~~~~~~~~-~---------~--------~~~~~~ 57 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEHPDFEVVALAASARSAGK---R--VSEAGPHLK-G---------E--------VVLELE 57 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcCCCceEEEEEechhhcCc---C--HHHHCcccc-c---------c--------cccccc
Confidence 6899998 9999999999999999999999654222221 1 112232211 0 0 001112
Q ss_pred CCCCCcccCCCcEEEEccCCccCHHHHHHH---HHCCCCeEEeeCCCC-----CCCeEEcccChhccC
Q 022491 87 PEEIPWAKTGAEYVVESTGVFTDKDKAAAH---LKGGAKKVVISAPSK-----DAPMFVVGVNEKEYK 146 (296)
Q Consensus 87 ~~~i~~~~~~~DvV~~at~~~~~~~~~~~~---l~~G~k~vvid~~~~-----d~~~~v~gvn~~~l~ 146 (296)
.+ +|...++|+||.|+|...+.+.++.+ ++.|+ ++||.++. +.+..++++|+++++
T Consensus 58 ~~--~~~~~~~DvV~~~~~~~~~~~~~~~~~~~~~~g~--~viD~s~~~~~~~~~~~~~~~~n~~~~~ 121 (122)
T smart00859 58 PE--DFEELAVDIVFLALPHGVSKEIAPLLPKAAEAGV--KVIDLSSAFRMDDDVPYGLPEVNPEAIK 121 (122)
T ss_pred cC--ChhhcCCCEEEEcCCcHHHHHHHHHHHhhhcCCC--EEEECCccccCCCCceEEcCccCHHHhc
Confidence 22 23335899999999999888854433 35676 99999876 367778888877654
No 49
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=98.72 E-value=5e-08 Score=88.04 Aligned_cols=92 Identities=20% Similarity=0.204 Sum_probs=65.8
Q ss_pred CCCCCeeEEEEEecCHHHHHHHHHHHc-CCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEE
Q 022491 1 MAGDKKIKIGINGFGRIGRLVARVALQ-RDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPV 79 (296)
Q Consensus 1 m~~~m~i~vgI~G~G~iG~~l~r~l~~-~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i 79 (296)
||.+.++||||+|+|+||+.+++.|.+ .++++++++.++ +.+.. .. +...++.-
T Consensus 1 ~~~m~~irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr--~~~~a-~~--~a~~~g~~-------------------- 55 (271)
T PRK13302 1 MSSRPELRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVR--DPQRH-AD--FIWGLRRP-------------------- 55 (271)
T ss_pred CCCCCeeEEEEECccHHHHHHHHHHHhcCCCeEEEEEECC--CHHHH-HH--HHHhcCCC--------------------
Confidence 777667999999999999999999987 589999999987 33211 10 11111100
Q ss_pred EEEecCCCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCC
Q 022491 80 AVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAK 122 (296)
Q Consensus 80 ~~~~~~d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k 122 (296)
..+ .+++++ ..++|+|++|+|...+.++..+++++|..
T Consensus 56 ~~~--~~~eel---l~~~D~Vvi~tp~~~h~e~~~~aL~aGk~ 93 (271)
T PRK13302 56 PPV--VPLDQL---ATHADIVVEAAPASVLRAIVEPVLAAGKK 93 (271)
T ss_pred ccc--CCHHHH---hcCCCEEEECCCcHHHHHHHHHHHHcCCc
Confidence 011 134555 24689999999999999999999999974
No 50
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=98.61 E-value=1.1e-07 Score=85.49 Aligned_cols=88 Identities=25% Similarity=0.309 Sum_probs=63.2
Q ss_pred eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEecCC
Q 022491 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRN 86 (296)
Q Consensus 7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~~d 86 (296)
+||||+|+|.+|+.+++.+.++|+++++++..+....+..... + . . .+.++. +
T Consensus 2 ~rVgIiG~G~iG~~~~~~l~~~~~~~l~~v~~~~~~~~~~~~~------~---~-------~---------~~~~~~--d 54 (265)
T PRK13303 2 MKVAMIGFGAIGAAVLELLEHDPDLRVDWVIVPEHSIDAVRRA------L---G-------E---------AVRVVS--S 54 (265)
T ss_pred cEEEEECCCHHHHHHHHHHhhCCCceEEEEEEcCCCHHHHhhh------h---c-------c---------CCeeeC--C
Confidence 7999999999999999999999999999998552222110000 0 0 0 011222 3
Q ss_pred CCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeE
Q 022491 87 PEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKV 124 (296)
Q Consensus 87 ~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~v 124 (296)
.+++ ..++|+|++|+|+..+.+++.+++++|+..+
T Consensus 55 ~~~l---~~~~DvVve~t~~~~~~e~~~~aL~aGk~Vv 89 (265)
T PRK13303 55 VDAL---PQRPDLVVECAGHAALKEHVVPILKAGIDCA 89 (265)
T ss_pred HHHh---ccCCCEEEECCCHHHHHHHHHHHHHcCCCEE
Confidence 4444 2579999999999999999999999998533
No 51
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=98.46 E-value=5e-07 Score=80.37 Aligned_cols=93 Identities=23% Similarity=0.257 Sum_probs=66.6
Q ss_pred CeeEEEEEecCHHHHHHHHHHHcC--CCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEE
Q 022491 5 KKIKIGINGFGRIGRLVARVALQR--DDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVF 82 (296)
Q Consensus 5 m~i~vgI~G~G~iG~~l~r~l~~~--p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~ 82 (296)
|++||||+|+|.||+.+++.|... +.+++++|+++ +.+.. ..+ . +. .++.
T Consensus 1 ~~~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~--~~~~~-~~~---------~-~~---------------~~~~ 52 (267)
T PRK13301 1 MTHRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRN--AADLP-PAL---------A-GR---------------VALL 52 (267)
T ss_pred CceEEEEECccHHHHHHHHHHhcCCCCceEEEEEecC--CHHHH-HHh---------h-cc---------------Cccc
Confidence 568999999999999999998864 45999999876 22110 100 0 00 0111
Q ss_pred ecCCCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCC
Q 022491 83 GFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAP 129 (296)
Q Consensus 83 ~~~d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~ 129 (296)
. +++++- ...+|+|+||.++...+++.++.|++|+..+++|-.
T Consensus 53 ~--~l~~ll--~~~~DlVVE~A~~~av~e~~~~iL~~g~dlvv~SvG 95 (267)
T PRK13301 53 D--GLPGLL--AWRPDLVVEAAGQQAIAEHAEGCLTAGLDMIICSAG 95 (267)
T ss_pred C--CHHHHh--hcCCCEEEECCCHHHHHHHHHHHHhcCCCEEEEChh
Confidence 1 445531 247999999999999999999999999987777643
No 52
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=98.44 E-value=6.6e-07 Score=80.57 Aligned_cols=95 Identities=23% Similarity=0.312 Sum_probs=64.0
Q ss_pred eEEEEEec-CHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEecC
Q 022491 7 IKIGINGF-GRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFR 85 (296)
Q Consensus 7 i~vgI~G~-G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~~ 85 (296)
+||+|+|+ |++|+.+++.+.++|+++++++.++ .+.....+.+ ....+... ..+.++.
T Consensus 2 ikV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~-~~~~~~~~~~--~~~~~~~~----------------~gv~~~~-- 60 (266)
T TIGR00036 2 IKVAVAGAAGRMGRELIKAALAAEGLQLVAAFER-HGSSLQGTDA--GELAGIGK----------------VGVPVTD-- 60 (266)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEec-CCccccCCCH--HHhcCcCc----------------CCceeeC--
Confidence 79999996 9999999999999999999999985 2221000000 00000000 0122222
Q ss_pred CCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEe
Q 022491 86 NPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVI 126 (296)
Q Consensus 86 d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvi 126 (296)
|++++ ..++|+|++||+...+.+.+..+++.|.. +|+
T Consensus 61 d~~~l---~~~~DvVIdfT~p~~~~~~~~~al~~g~~-vVi 97 (266)
T TIGR00036 61 DLEAV---ETDPDVLIDFTTPEGVLNHLKFALEHGVR-LVV 97 (266)
T ss_pred CHHHh---cCCCCEEEECCChHHHHHHHHHHHHCCCC-EEE
Confidence 44444 24689999999999999999999999975 444
No 53
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=98.43 E-value=4e-07 Score=71.46 Aligned_cols=93 Identities=31% Similarity=0.492 Sum_probs=66.3
Q ss_pred eEEEEEecCHHHHHHHHHHHcC-CCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEecC
Q 022491 7 IKIGINGFGRIGRLVARVALQR-DDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFR 85 (296)
Q Consensus 7 i~vgI~G~G~iG~~l~r~l~~~-p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~~ 85 (296)
+||||+|+|.+|+..++.+.++ |++++++|.++ +.+.. .. ....++ + +.+.
T Consensus 1 i~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~--~~~~~-~~--~~~~~~--------------~-------~~~~-- 52 (120)
T PF01408_consen 1 IRVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDP--DPERA-EA--FAEKYG--------------I-------PVYT-- 52 (120)
T ss_dssp EEEEEESTSHHHHHHHHHHHHTTTTEEEEEEECS--SHHHH-HH--HHHHTT--------------S-------EEES--
T ss_pred CEEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeC--CHHHH-HH--HHHHhc--------------c-------cchh--
Confidence 6899999999999999888877 89999999988 33211 10 011110 1 1222
Q ss_pred CCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCC
Q 022491 86 NPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAP 129 (296)
Q Consensus 86 d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~ 129 (296)
+.+++ +...++|+|+.|||...+.+.+..++++|. .+++.-|
T Consensus 53 ~~~~l-l~~~~~D~V~I~tp~~~h~~~~~~~l~~g~-~v~~EKP 94 (120)
T PF01408_consen 53 DLEEL-LADEDVDAVIIATPPSSHAEIAKKALEAGK-HVLVEKP 94 (120)
T ss_dssp SHHHH-HHHTTESEEEEESSGGGHHHHHHHHHHTTS-EEEEESS
T ss_pred HHHHH-HHhhcCCEEEEecCCcchHHHHHHHHHcCC-EEEEEcC
Confidence 34444 223579999999999999999999999998 4667544
No 54
>COG4569 MhpF Acetaldehyde dehydrogenase (acetylating) [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.38 E-value=1.5e-06 Score=73.67 Aligned_cols=139 Identities=21% Similarity=0.278 Sum_probs=88.7
Q ss_pred CCCCCeeEEEEEecCHHHHHHHHHHHcCC-CcEEEEEecCCCChhhhhh--cccccccCCCCcCcceeeeCCceeEECCE
Q 022491 1 MAGDKKIKIGINGFGRIGRLVARVALQRD-DVELVAVNDPFISTDYMTY--MFKYDSVHGQWKHNELKVKDEKTLLFGEK 77 (296)
Q Consensus 1 m~~~m~i~vgI~G~G~iG~~l~r~l~~~p-~~elv~i~~~~~~~~~~a~--~l~~~s~~~~~~~~~v~~~~~~~l~~~~~ 77 (296)
|++ |.||+|+|-|.||..|+-.+++|. .+|..+........+-+++ .|....+| +| +. +
T Consensus 1 m~s--k~kvaiigsgni~tdlm~k~lr~g~~le~~~mvgidp~sdglaraarlgv~tt~-----------eg--v~--~- 62 (310)
T COG4569 1 MSS--KRKVAIIGSGNIGTDLMIKILRHGQHLEMAVMVGIDPQSDGLARAARLGVATTH-----------EG--VI--G- 62 (310)
T ss_pred CCC--cceEEEEccCcccHHHHHHHHhcCCcccceeEEccCCCccHHHHHHhcCCcchh-----------hH--HH--H-
Confidence 554 389999999999999988888774 4666555533111111221 11111221 11 00 0
Q ss_pred EEEEEecCCCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCCCCC-CCeEEcccC-hhccCCCCCeEEcC
Q 022491 78 PVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKD-APMFVVGVN-EKEYKPELDIVSNA 155 (296)
Q Consensus 78 ~i~~~~~~d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~~~d-~~~~v~gvn-~~~l~~~~~iIs~p 155 (296)
.. .-| + ..++|+||++|..+.+.+.++++.++|. ..||+..+. -|-+|+-+| ++.++ ++-|+--
T Consensus 63 ---ll--~~p-~----~~di~lvfdatsa~~h~~~a~~~ae~gi--~~idltpaaigp~vvp~~n~~eh~~--a~nvnmv 128 (310)
T COG4569 63 ---LL--NMP-E----FADIDLVFDATSAGAHVKNAAALAEAGI--RLIDLTPAAIGPYVVPVVNLEEHVD--ALNVNMV 128 (310)
T ss_pred ---HH--hCC-C----CCCcceEEeccccchhhcchHhHHhcCC--ceeecchhccCCeeccccchHHhcC--CCCcceE
Confidence 00 012 2 2578999999999999999999999999 577765543 788899999 44454 3334444
Q ss_pred CcchhhhHhHHHHHHh
Q 022491 156 SCTTNCLAPLAKVIHD 171 (296)
Q Consensus 156 ~C~~tal~~~l~~L~~ 171 (296)
-|...+..|.++...+
T Consensus 129 tcggqatipiv~avsr 144 (310)
T COG4569 129 TCGGQATIPIVAAVSR 144 (310)
T ss_pred eecCcccchhhhhhhh
Confidence 6888888888877644
No 55
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=98.38 E-value=3.7e-07 Score=72.71 Aligned_cols=92 Identities=29% Similarity=0.339 Sum_probs=58.4
Q ss_pred eEEEEEec-CHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEecC
Q 022491 7 IKIGINGF-GRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFR 85 (296)
Q Consensus 7 i~vgI~G~-G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~~ 85 (296)
|||+|+|+ |++|+.+++.+.++++++|+++.++..+. . . ....+.+. +. ....++++ .
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~-~----~--g~d~g~~~-~~-----------~~~~~~v~--~ 59 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSA-K----V--GKDVGELA-GI-----------GPLGVPVT--D 59 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTST-T----T--TSBCHHHC-TS-----------ST-SSBEB--S
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcc-c----c--cchhhhhh-Cc-----------CCcccccc--h
Confidence 68999999 99999999999999999999999873321 0 0 00000000 00 00111122 2
Q ss_pred CCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCC
Q 022491 86 NPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAK 122 (296)
Q Consensus 86 d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k 122 (296)
+.+++ ...+|+++|+|-.....+.++.+++.|..
T Consensus 60 ~l~~~---~~~~DVvIDfT~p~~~~~~~~~~~~~g~~ 93 (124)
T PF01113_consen 60 DLEEL---LEEADVVIDFTNPDAVYDNLEYALKHGVP 93 (124)
T ss_dssp -HHHH---TTH-SEEEEES-HHHHHHHHHHHHHHT-E
T ss_pred hHHHh---cccCCEEEEcCChHHhHHHHHHHHhCCCC
Confidence 44444 23599999999877778888888998884
No 56
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=98.33 E-value=1.8e-06 Score=74.42 Aligned_cols=93 Identities=26% Similarity=0.368 Sum_probs=67.0
Q ss_pred eEEEEEecCHHHHHHHHHHHcCC-CcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEecC
Q 022491 7 IKIGINGFGRIGRLVARVALQRD-DVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFR 85 (296)
Q Consensus 7 i~vgI~G~G~iG~~l~r~l~~~p-~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~~ 85 (296)
++|||+|+|.||+.+++++...+ ++|++++.|+..+- .-.+ ..-. . +.. + .
T Consensus 1 l~vgiVGcGaIG~~l~e~v~~~~~~~e~v~v~D~~~ek--~~~~---~~~~---~---------------~~~--~---s 52 (255)
T COG1712 1 LKVGIVGCGAIGKFLLELVRDGRVDFELVAVYDRDEEK--AKEL---EASV---G---------------RRC--V---S 52 (255)
T ss_pred CeEEEEeccHHHHHHHHHHhcCCcceeEEEEecCCHHH--HHHH---Hhhc---C---------------CCc--c---c
Confidence 47999999999999999999764 69999999873221 1111 1100 0 000 0 1
Q ss_pred CCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCCC
Q 022491 86 NPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPS 130 (296)
Q Consensus 86 d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~~ 130 (296)
+.+++ ..++|++++|.++...+++++++|++|+..+|+|-++
T Consensus 53 ~ide~---~~~~DlvVEaAS~~Av~e~~~~~L~~g~d~iV~SVGA 94 (255)
T COG1712 53 DIDEL---IAEVDLVVEAASPEAVREYVPKILKAGIDVIVMSVGA 94 (255)
T ss_pred cHHHH---hhccceeeeeCCHHHHHHHhHHHHhcCCCEEEEechh
Confidence 34444 3689999999999999999999999999888887543
No 57
>PRK11579 putative oxidoreductase; Provisional
Probab=98.32 E-value=1.8e-06 Score=80.61 Aligned_cols=92 Identities=25% Similarity=0.382 Sum_probs=65.7
Q ss_pred eeEEEEEecCHHHHH-HHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEec
Q 022491 6 KIKIGINGFGRIGRL-VARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGF 84 (296)
Q Consensus 6 ~i~vgI~G~G~iG~~-l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~ 84 (296)
++||||+|+|.+|+. +++.+...|++++++|.++ +.+..+ ..++ + .+++.
T Consensus 4 ~irvgiiG~G~i~~~~~~~~~~~~~~~~l~av~d~--~~~~~~------~~~~----~----------------~~~~~- 54 (346)
T PRK11579 4 KIRVGLIGYGYASKTFHAPLIAGTPGLELAAVSSS--DATKVK------ADWP----T----------------VTVVS- 54 (346)
T ss_pred cceEEEECCCHHHHHHHHHHHhhCCCCEEEEEECC--CHHHHH------hhCC----C----------------CceeC-
Confidence 389999999999984 6788888999999999987 332211 1111 0 01121
Q ss_pred CCCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCC
Q 022491 85 RNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAP 129 (296)
Q Consensus 85 ~d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~ 129 (296)
|.+++ ..+.++|+|+.|||+..+.+.+.+++++|. .|++.-|
T Consensus 55 -~~~el-l~~~~vD~V~I~tp~~~H~~~~~~al~aGk-hVl~EKP 96 (346)
T PRK11579 55 -EPQHL-FNDPNIDLIVIPTPNDTHFPLAKAALEAGK-HVVVDKP 96 (346)
T ss_pred -CHHHH-hcCCCCCEEEEcCCcHHHHHHHHHHHHCCC-eEEEeCC
Confidence 34444 223579999999999999999999999995 4666544
No 58
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=98.30 E-value=2.1e-06 Score=76.98 Aligned_cols=87 Identities=28% Similarity=0.329 Sum_probs=62.2
Q ss_pred eEEEEEec-CHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEecC
Q 022491 7 IKIGINGF-GRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFR 85 (296)
Q Consensus 7 i~vgI~G~-G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~~ 85 (296)
+||+|+|+ |++|+.+++.+.++|+++++++.++..+.. ... ..+. +..+ .
T Consensus 2 mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~--------~~~-~~~~------------------i~~~--~ 52 (257)
T PRK00048 2 IKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPL--------VGQ-GALG------------------VAIT--D 52 (257)
T ss_pred cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccc--------ccc-CCCC------------------cccc--C
Confidence 79999999 999999999999999999999998622210 000 1000 1111 1
Q ss_pred CCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEe
Q 022491 86 NPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVI 126 (296)
Q Consensus 86 d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvi 126 (296)
|.+++ ..++|+|+++|+.....+.+..++++|+. +++
T Consensus 53 dl~~l---l~~~DvVid~t~p~~~~~~~~~al~~G~~-vvi 89 (257)
T PRK00048 53 DLEAV---LADADVLIDFTTPEATLENLEFALEHGKP-LVI 89 (257)
T ss_pred CHHHh---ccCCCEEEECCCHHHHHHHHHHHHHcCCC-EEE
Confidence 34443 13789999999988889999999999985 444
No 59
>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]
Probab=98.29 E-value=5.2e-06 Score=73.46 Aligned_cols=98 Identities=28% Similarity=0.310 Sum_probs=65.6
Q ss_pred CeeEEEEEec-CHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEe
Q 022491 5 KKIKIGINGF-GRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFG 83 (296)
Q Consensus 5 m~i~vgI~G~-G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~ 83 (296)
|||||+|+|+ |++|+++++++.+.|+++|++..++..+. .. .+-.+.+. + .+...+++..
T Consensus 1 ~~iki~V~Ga~GRMG~~ii~~v~~~~~~~L~aa~~~~~~~-----~~--g~d~ge~~-g-----------~~~~gv~v~~ 61 (266)
T COG0289 1 SMIKVAVAGASGRMGRTLIRAVLEAPDLELVAAFDRPGSL-----SL--GSDAGELA-G-----------LGLLGVPVTD 61 (266)
T ss_pred CCceEEEEcCCChHHHHHHHHHhcCCCceEEEEEecCCcc-----cc--ccchhhhc-c-----------ccccCceeec
Confidence 3589999999 99999999999999999999998873322 11 01011111 0 0011222322
Q ss_pred cCCCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEe
Q 022491 84 FRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVI 126 (296)
Q Consensus 84 ~~d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvi 126 (296)
++... ..+.|+++|-|-...+.+.++.+++.|.+.||-
T Consensus 62 --~~~~~---~~~~DV~IDFT~P~~~~~~l~~~~~~~~~lVIG 99 (266)
T COG0289 62 --DLLLV---KADADVLIDFTTPEATLENLEFALEHGKPLVIG 99 (266)
T ss_pred --chhhc---ccCCCEEEECCCchhhHHHHHHHHHcCCCeEEE
Confidence 22222 468999999988888999999999999764433
No 60
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=98.24 E-value=3.4e-06 Score=75.97 Aligned_cols=89 Identities=25% Similarity=0.383 Sum_probs=62.3
Q ss_pred eEEEEEecCHHHHHHHHHHHcCC-CcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEecC
Q 022491 7 IKIGINGFGRIGRLVARVALQRD-DVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFR 85 (296)
Q Consensus 7 i~vgI~G~G~iG~~l~r~l~~~p-~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~~ 85 (296)
+||||+|+|.+|+.+++.+.+.+ +++++++.++ +.+....+ .+.++ ...+.
T Consensus 2 mrIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~--~~~~a~~~---a~~~~---------------------~~~~~-- 53 (265)
T PRK13304 2 LKIGIVGCGAIASLITKAILSGRINAELYAFYDR--NLEKAENL---ASKTG---------------------AKACL-- 53 (265)
T ss_pred CEEEEECccHHHHHHHHHHHcCCCCeEEEEEECC--CHHHHHHH---HHhcC---------------------CeeEC--
Confidence 69999999999999999998864 8999999987 33211111 11000 01121
Q ss_pred CCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEe
Q 022491 86 NPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVI 126 (296)
Q Consensus 86 d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvi 126 (296)
+.+++. .++|+|++|++.....++++.++++|...++.
T Consensus 54 ~~~ell---~~~DvVvi~a~~~~~~~~~~~al~~Gk~Vvv~ 91 (265)
T PRK13304 54 SIDELV---EDVDLVVECASVNAVEEVVPKSLENGKDVIIM 91 (265)
T ss_pred CHHHHh---cCCCEEEEcCChHHHHHHHHHHHHcCCCEEEE
Confidence 344442 47999999999999999999999999753333
No 61
>PRK06270 homoserine dehydrogenase; Provisional
Probab=98.20 E-value=4.4e-06 Score=77.92 Aligned_cols=105 Identities=25% Similarity=0.318 Sum_probs=61.5
Q ss_pred CeeEEEEEecCHHHHHHHHHHHcCC---------CcEEEEEecCCCCh----h-hhhhcccccccCCCCcCcceeeeCCc
Q 022491 5 KKIKIGINGFGRIGRLVARVALQRD---------DVELVAVNDPFIST----D-YMTYMFKYDSVHGQWKHNELKVKDEK 70 (296)
Q Consensus 5 m~i~vgI~G~G~iG~~l~r~l~~~p---------~~elv~i~~~~~~~----~-~~a~~l~~~s~~~~~~~~~v~~~~~~ 70 (296)
|++||||+|+|.+|+.+++.|.+++ ++++++|.++.... + +......+...++.+.
T Consensus 1 m~i~V~IiG~G~VG~~~~~~L~~~~~~~~~~~g~~~~vvai~d~~~~~~~~~Gi~~~~~~~~~~~~~~~~---------- 70 (341)
T PRK06270 1 MEMKIALIGFGGVGQGVAELLAEKREYLKKRYGLDLKVVAIADSSGSAIDPDGLDLELALKVKEETGKLA---------- 70 (341)
T ss_pred CeEEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCCcccCcCCCCHHHHHHHHhccCCcc----------
Confidence 5699999999999999999998764 79999999852110 0 0000000001011000
Q ss_pred eeEECCEEEEEEecCCCCCCCcccCCCcEEEEccCCccC-----HHHHHHHHHCCCCeEEeeC
Q 022491 71 TLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTD-----KDKAAAHLKGGAKKVVISA 128 (296)
Q Consensus 71 ~l~~~~~~i~~~~~~d~~~i~~~~~~~DvV~~at~~~~~-----~~~~~~~l~~G~k~vvid~ 128 (296)
.+.+ .....+++++ ....++|+|++|||+..+ .+++..++++|+ -||.+
T Consensus 71 --~~~~----~~~~~d~~el-l~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~Gk--hVVta 124 (341)
T PRK06270 71 --DYPE----GGGEISGLEV-IRSVDADVVVEATPTNIETGEPALSHCRKALERGK--HVVTS 124 (341)
T ss_pred --cCcc----ccccCCHHHH-hhccCCCEEEECCcCcccccchHHHHHHHHHHCCC--EEEcC
Confidence 0000 0000133332 223579999999997554 678889999998 55543
No 62
>PRK10206 putative oxidoreductase; Provisional
Probab=98.04 E-value=1e-05 Score=75.61 Aligned_cols=94 Identities=16% Similarity=0.238 Sum_probs=63.0
Q ss_pred eeEEEEEecCHHHH-HHHHHHHc-CCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEe
Q 022491 6 KIKIGINGFGRIGR-LVARVALQ-RDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFG 83 (296)
Q Consensus 6 ~i~vgI~G~G~iG~-~l~r~l~~-~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~ 83 (296)
++||||+|+|.+++ .+++.+.. .+++++++|.|+..+... ....|+. ++++.
T Consensus 1 ~irvgiiG~G~~~~~~h~~~~~~~~~~~~l~av~d~~~~~~~------~~~~~~~--------------------~~~~~ 54 (344)
T PRK10206 1 VINCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPEE------QAPIYSH--------------------IHFTS 54 (344)
T ss_pred CeEEEEECCCHHHhheehhhHhcCCCCEEEEEEEcCChhHHH------HHHhcCC--------------------CcccC
Confidence 38999999999774 46776655 468999999987322111 1111110 01111
Q ss_pred cCCCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCC
Q 022491 84 FRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAP 129 (296)
Q Consensus 84 ~~d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~ 129 (296)
|.+++ +...++|+|+.|||...+.+.+.+++++|. .|++.-|
T Consensus 55 --~~~el-l~~~~iD~V~I~tp~~~H~~~~~~al~aGk-hVl~EKP 96 (344)
T PRK10206 55 --DLDEV-LNDPDVKLVVVCTHADSHFEYAKRALEAGK-NVLVEKP 96 (344)
T ss_pred --CHHHH-hcCCCCCEEEEeCCchHHHHHHHHHHHcCC-cEEEecC
Confidence 34443 224579999999999999999999999995 5666544
No 63
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=98.00 E-value=1.6e-05 Score=73.55 Aligned_cols=96 Identities=26% Similarity=0.342 Sum_probs=65.7
Q ss_pred CeeEEEEEecC-HHHHHHHHHHHcCCC-cEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEE
Q 022491 5 KKIKIGINGFG-RIGRLVARVALQRDD-VELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVF 82 (296)
Q Consensus 5 m~i~vgI~G~G-~iG~~l~r~l~~~p~-~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~ 82 (296)
+++||||+|+| +.++.+++.+.+.++ ++++++.|+ +.+... .+...|+ + . ..+
T Consensus 2 ~~irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d~--~~~~a~---~~a~~~~--------------~----~--~~~ 56 (342)
T COG0673 2 KMIRVGIIGAGGIAGKAHLPALAALGGGLELVAVVDR--DPERAE---AFAEEFG--------------I----A--KAY 56 (342)
T ss_pred CeeEEEEEcccHHHHHHhHHHHHhCCCceEEEEEecC--CHHHHH---HHHHHcC--------------C----C--ccc
Confidence 45999999996 666779999999887 799999987 332211 1122121 0 0 012
Q ss_pred ecCCCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCC
Q 022491 83 GFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAP 129 (296)
Q Consensus 83 ~~~d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~ 129 (296)
. +.+++ ..+.++|+|+.|||...+.+.+.+++++|. .|++.-|
T Consensus 57 ~--~~~~l-l~~~~iD~V~Iatp~~~H~e~~~~AL~aGk-hVl~EKP 99 (342)
T COG0673 57 T--DLEEL-LADPDIDAVYIATPNALHAELALAALEAGK-HVLCEKP 99 (342)
T ss_pred C--CHHHH-hcCCCCCEEEEcCCChhhHHHHHHHHhcCC-EEEEcCC
Confidence 1 34443 223468999999999999999999999997 4666544
No 64
>PRK06349 homoserine dehydrogenase; Provisional
Probab=97.86 E-value=4.3e-05 Score=73.38 Aligned_cols=90 Identities=22% Similarity=0.347 Sum_probs=59.6
Q ss_pred eeEEEEEecCHHHHHHHHHHHcCC---------CcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECC
Q 022491 6 KIKIGINGFGRIGRLVARVALQRD---------DVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGE 76 (296)
Q Consensus 6 ~i~vgI~G~G~iG~~l~r~l~~~p---------~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~ 76 (296)
++||||+|+|.+|+.++++|.+|+ ++++++|.++ +... +..+ + +. +
T Consensus 3 ~i~VgiiG~G~VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~--~~~~-~~~~--~-----~~-~-------------- 57 (426)
T PRK06349 3 PLKVGLLGLGTVGSGVVRILEENAEEIAARAGRPIEIKKVAVR--DLEK-DRGV--D-----LP-G-------------- 57 (426)
T ss_pred eEEEEEEeeCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeC--Chhh-ccCC--C-----Cc-c--------------
Confidence 489999999999999999997764 6899999886 2211 0000 0 00 0
Q ss_pred EEEEEEecCCCCCCCcccCCCcEEEEccCC-ccCHHHHHHHHHCCCCeEEee
Q 022491 77 KPVAVFGFRNPEEIPWAKTGAEYVVESTGV-FTDKDKAAAHLKGGAKKVVIS 127 (296)
Q Consensus 77 ~~i~~~~~~d~~~i~~~~~~~DvV~~at~~-~~~~~~~~~~l~~G~k~vvid 127 (296)
...+ .|++++ ..+.++|+|++|+|. ..+.+++.+++++|. -|++
T Consensus 58 --~~~~--~d~~~l-l~d~~iDvVve~tg~~~~~~~~~~~aL~~Gk--hVVt 102 (426)
T PRK06349 58 --ILLT--TDPEEL-VNDPDIDIVVELMGGIEPARELILKALEAGK--HVVT 102 (426)
T ss_pred --ccee--CCHHHH-hhCCCCCEEEECCCCchHHHHHHHHHHHCCC--eEEE
Confidence 0011 134443 224579999999976 345778889999996 4554
No 65
>KOG2741 consensus Dimeric dihydrodiol dehydrogenase [Carbohydrate transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.71 E-value=0.00012 Score=67.16 Aligned_cols=101 Identities=24% Similarity=0.300 Sum_probs=71.0
Q ss_pred CCCCCeeEEEEEecCHHHHHHHHHHHcCC--CcEEEEEecCCCCh-hhhhhcccccccCCCCcCcceeeeCCceeEECCE
Q 022491 1 MAGDKKIKIGINGFGRIGRLVARVALQRD--DVELVAVNDPFIST-DYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEK 77 (296)
Q Consensus 1 m~~~m~i~vgI~G~G~iG~~l~r~l~~~p--~~elv~i~~~~~~~-~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~ 77 (296)
|+..+.+|.||+|+|++++.+++.|..-| +.+|++|++++.+- ...|....+ + +
T Consensus 1 ~~~s~~ir~Gi~g~g~ia~~f~~al~~~p~s~~~Ivava~~s~~~A~~fAq~~~~-------~-------~--------- 57 (351)
T KOG2741|consen 1 VSDSATIRWGIVGAGRIARDFVRALHTLPESNHQIVAVADPSLERAKEFAQRHNI-------P-------N--------- 57 (351)
T ss_pred CCCCceeEEEEeehhHHHHHHHHHhccCcccCcEEEEEecccHHHHHHHHHhcCC-------C-------C---------
Confidence 66667799999999999999999999988 89999999983322 211111111 0 0
Q ss_pred EEEEEecCCCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCC
Q 022491 78 PVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAP 129 (296)
Q Consensus 78 ~i~~~~~~d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~ 129 (296)
.+++. ..|++ .++..+|+|..++|+..+.+++-.++..|. .|++.-|
T Consensus 58 -~k~y~--syEeL-akd~~vDvVyi~~~~~qH~evv~l~l~~~K-~VL~EKP 104 (351)
T KOG2741|consen 58 -PKAYG--SYEEL-AKDPEVDVVYISTPNPQHYEVVMLALNKGK-HVLCEKP 104 (351)
T ss_pred -Ccccc--CHHHH-hcCCCcCEEEeCCCCccHHHHHHHHHHcCC-cEEeccc
Confidence 01121 23444 235689999999999999999988888874 3666544
No 66
>PRK08374 homoserine dehydrogenase; Provisional
Probab=97.66 E-value=8.6e-05 Score=69.11 Aligned_cols=106 Identities=25% Similarity=0.323 Sum_probs=61.0
Q ss_pred CeeEEEEEecCHHHHHHHHHHHcC--------C-CcEEEEEecCCCCh----h-hhhhcccccccCCCCcCcceeeeCCc
Q 022491 5 KKIKIGINGFGRIGRLVARVALQR--------D-DVELVAVNDPFIST----D-YMTYMFKYDSVHGQWKHNELKVKDEK 70 (296)
Q Consensus 5 m~i~vgI~G~G~iG~~l~r~l~~~--------p-~~elv~i~~~~~~~----~-~~a~~l~~~s~~~~~~~~~v~~~~~~ 70 (296)
|++||+|+|+|.+|+.++++|.++ . ++++++|.++.... + ....++.+-..++...
T Consensus 1 ~~i~VaIiG~GnVG~~~~~~L~~~~~~l~~~~G~~l~VvaV~ds~~~~~~~~Gid~~~l~~~~~~~~~~~---------- 70 (336)
T PRK08374 1 MEVKVSIFGFGNVGRAVAEVLAEKSRVFKERYGVELKVVSITDTSGTIWLPEDIDLREAKEVKENFGKLS---------- 70 (336)
T ss_pred CeeEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCccccCCCCCChHHHHHhhhccCchh----------
Confidence 569999999999999999998763 1 48999998752211 0 0000000000000000
Q ss_pred eeEECCEEEEEEecCCCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEee
Q 022491 71 TLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVIS 127 (296)
Q Consensus 71 ~l~~~~~~i~~~~~~d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid 127 (296)
.+.-+ ... ...+++++ +...++|+|++|++.....+...++++.|+ -||.
T Consensus 71 ~~~~~---~~~-~~~~~~el-l~~~~~DVvVd~t~~~~a~~~~~~al~~G~--~VVt 120 (336)
T PRK08374 71 NWGND---YEV-YNFSPEEI-VEEIDADIVVDVTNDKNAHEWHLEALKEGK--SVVT 120 (336)
T ss_pred hcccc---ccc-cCCCHHHH-HhcCCCCEEEECCCcHHHHHHHHHHHhhCC--cEEE
Confidence 00000 000 00122332 223579999999998888889999999998 4453
No 67
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=97.60 E-value=0.0002 Score=75.21 Aligned_cols=152 Identities=14% Similarity=0.042 Sum_probs=87.3
Q ss_pred eeEEEEEecCHHHHHHHHHHHcCCCcE------------EEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeE
Q 022491 6 KIKIGINGFGRIGRLVARVALQRDDVE------------LVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLL 73 (296)
Q Consensus 6 ~i~vgI~G~G~iG~~l~r~l~~~p~~e------------lv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~ 73 (296)
|.||+|+|+|++|+.+++.|.++|+++ +++|.|+ +.+.... + ...+++..
T Consensus 569 ~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~--~~~~a~~-l--a~~~~~~~------------- 630 (1042)
T PLN02819 569 SQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASL--YLKDAKE-T--VEGIENAE------------- 630 (1042)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECC--CHHHHHH-H--HHhcCCCc-------------
Confidence 369999999999999999999998877 7888886 2221111 1 11111100
Q ss_pred ECCEEEEEEecCCCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCCCCCCCeEEcccChhccCCCCCeEE
Q 022491 74 FGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKDAPMFVVGVNEKEYKPELDIVS 153 (296)
Q Consensus 74 ~~~~~i~~~~~~d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~~~d~~~~v~gvn~~~l~~~~~iIs 153 (296)
.+.+ ...|.+++.-...++|+|+.|+|...+...+..++++|+ -+++.+... + -...+. ++.+ .+.+.-
T Consensus 631 ----~v~l-Dv~D~e~L~~~v~~~DaVIsalP~~~H~~VAkaAieaGk--Hvv~eky~~-~-e~~~L~-e~Ak-~AGV~~ 699 (1042)
T PLN02819 631 ----AVQL-DVSDSESLLKYVSQVDVVISLLPASCHAVVAKACIELKK--HLVTASYVS-E-EMSALD-SKAK-EAGITI 699 (1042)
T ss_pred ----eEEe-ecCCHHHHHHhhcCCCEEEECCCchhhHHHHHHHHHcCC--CEEECcCCH-H-HHHHHH-HHHH-HcCCEE
Confidence 0111 011333331001479999999999999999999999998 566654220 0 001111 1122 344455
Q ss_pred cCCcchhhhHhHHHH-----HHhhcCeeEEEEEEEeecCCc
Q 022491 154 NASCTTNCLAPLAKV-----IHDKFGIVEGLMTTVHSITAT 189 (296)
Q Consensus 154 ~p~C~~tal~~~l~~-----L~~~~gi~~~~~~~v~a~sg~ 189 (296)
-++|. +.|.+.- +.+.+.-+-+.+..++++.|.
T Consensus 700 m~e~G---lDPGid~~lA~~~Id~~~~~~GkI~s~~s~~GG 737 (1042)
T PLN02819 700 LCEMG---LDPGIDHMMAMKMIDDAHERGGKVKSFTSYCGG 737 (1042)
T ss_pred EECCc---cCHHHHHHHHHHHHHhhcccCCcEEEEEEEEcC
Confidence 55666 5665554 233331112345677777774
No 68
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=97.58 E-value=6.3e-05 Score=58.95 Aligned_cols=86 Identities=24% Similarity=0.286 Sum_probs=52.5
Q ss_pred ecCHHHHHHHHHHHcCC---CcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEecCCCCC
Q 022491 13 GFGRIGRLVARVALQRD---DVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEE 89 (296)
Q Consensus 13 G~G~iG~~l~r~l~~~p---~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~~d~~~ 89 (296)
|+|.+|+.++++|.++. ++++++|.++. ..-. ... .... . . . . .. .+.++
T Consensus 1 G~G~VG~~l~~~l~~~~~~~~~~v~~v~~~~-~~~~--~~~--~~~~---~-~------~--~--------~~--~~~~~ 53 (117)
T PF03447_consen 1 GFGNVGRGLLEQLKEQQERIDLEVVGVADRS-MLIS--KDW--AASF---P-D------E--A--------FT--TDLEE 53 (117)
T ss_dssp --SHHHHHHHHHHHHTHHHCEEEEEEEEESS-EEEE--TTH--HHHH---T-H------S--C--------EE--SSHHH
T ss_pred CCCHHHHHHHHHHHhCcccCCEEEEEEEECC-chhh--hhh--hhhc---c-c------c--c--------cc--CCHHH
Confidence 88999999999999886 79999999873 1100 000 0000 0 0 0 0 01 12333
Q ss_pred CCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeC
Q 022491 90 IPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISA 128 (296)
Q Consensus 90 i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~ 128 (296)
+ ....++|+|+|||+.....++.+.++++|+ -||.+
T Consensus 54 ~-~~~~~~dvvVE~t~~~~~~~~~~~~L~~G~--~VVt~ 89 (117)
T PF03447_consen 54 L-IDDPDIDVVVECTSSEAVAEYYEKALERGK--HVVTA 89 (117)
T ss_dssp H-HTHTT-SEEEE-SSCHHHHHHHHHHHHTTC--EEEES
T ss_pred H-hcCcCCCEEEECCCchHHHHHHHHHHHCCC--eEEEE
Confidence 2 001379999999999988999999999998 55544
No 69
>PLN02775 Probable dihydrodipicolinate reductase
Probab=97.57 E-value=0.00023 Score=64.22 Aligned_cols=96 Identities=25% Similarity=0.192 Sum_probs=63.9
Q ss_pred CeeEEEEEec-CHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEe
Q 022491 5 KKIKIGINGF-GRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFG 83 (296)
Q Consensus 5 m~i~vgI~G~-G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~ 83 (296)
+.+||.|+|+ |++|+++++.+.+ ++++||+..++....+.+. +.+.|..++++.
T Consensus 10 ~~i~V~V~Ga~G~MG~~~~~av~~-~~~~Lv~~~~~~~~~~~~~------------------------~~~~g~~v~~~~ 64 (286)
T PLN02775 10 SAIPIMVNGCTGKMGHAVAEAAVS-AGLQLVPVSFTGPAGVGVT------------------------VEVCGVEVRLVG 64 (286)
T ss_pred CCCeEEEECCCChHHHHHHHHHhc-CCCEEEEEecccccccccc------------------------ceeccceeeeec
Confidence 3589999999 9999999999999 9999999887622221100 011112334442
Q ss_pred cCCCCCCC--cccCCCc-EEEEccCCccCHHHHHHHHHCCCCeEE
Q 022491 84 FRNPEEIP--WAKTGAE-YVVESTGVFTDKDKAAAHLKGGAKKVV 125 (296)
Q Consensus 84 ~~d~~~i~--~~~~~~D-vV~~at~~~~~~~~~~~~l~~G~k~vv 125 (296)
..|.++.- .....+| ++||-|-.....+.++.+++.|+..|+
T Consensus 65 ~~dl~~~l~~~~~~~~~~VvIDFT~P~a~~~~~~~~~~~g~~~Vv 109 (286)
T PLN02775 65 PSEREAVLSSVKAEYPNLIVVDYTLPDAVNDNAELYCKNGLPFVM 109 (286)
T ss_pred CccHHHHHHHhhccCCCEEEEECCChHHHHHHHHHHHHCCCCEEE
Confidence 22333320 0012588 899998888888999999999986433
No 70
>PRK06392 homoserine dehydrogenase; Provisional
Probab=97.48 E-value=0.00036 Score=64.63 Aligned_cols=33 Identities=36% Similarity=0.663 Sum_probs=29.1
Q ss_pred eEEEEEecCHHHHHHHHHHHcC-------CCcEEEEEecC
Q 022491 7 IKIGINGFGRIGRLVARVALQR-------DDVELVAVNDP 39 (296)
Q Consensus 7 i~vgI~G~G~iG~~l~r~l~~~-------p~~elv~i~~~ 39 (296)
|||+|+|+|.+|+.++++|.++ .++++++|.++
T Consensus 1 mrVaIiGfG~VG~~va~~L~~~~~~~~~g~~l~VVaVsds 40 (326)
T PRK06392 1 IRISIIGLGNVGLNVLRIIKSRNDDRRNNNGISVVSVSDS 40 (326)
T ss_pred CEEEEECCCHHHHHHHHHHHhCHHhHhcCCCeEEEEEEEC
Confidence 4899999999999999999874 46899999876
No 71
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=97.42 E-value=0.00027 Score=56.46 Aligned_cols=81 Identities=25% Similarity=0.271 Sum_probs=50.2
Q ss_pred eeEEEEEecCHHHHHHHHHHHcCCCcEEEEEecCCCCh-hhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEec
Q 022491 6 KIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFIST-DYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGF 84 (296)
Q Consensus 6 ~i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~~~~~-~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~ 84 (296)
.+||+|||+|++|..|.++|.+.. .+++.+.+++... +..+..+ + .. .+.
T Consensus 10 ~l~I~iIGaGrVG~~La~aL~~ag-~~v~~v~srs~~sa~~a~~~~---------~---------------~~--~~~-- 60 (127)
T PF10727_consen 10 RLKIGIIGAGRVGTALARALARAG-HEVVGVYSRSPASAERAAAFI---------G---------------AG--AIL-- 60 (127)
T ss_dssp --EEEEECTSCCCCHHHHHHHHTT-SEEEEESSCHH-HHHHHHC-----------T---------------T--------
T ss_pred ccEEEEECCCHHHHHHHHHHHHCC-CeEEEEEeCCccccccccccc---------c---------------cc--ccc--
Confidence 489999999999999999999875 7899998763222 2111110 0 00 011
Q ss_pred CCCCCCCcccCCCcEEEEccCCccCHHHHHHHHHC
Q 022491 85 RNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKG 119 (296)
Q Consensus 85 ~d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~ 119 (296)
+++++ ....|++|.|+|...-.+.++++.+.
T Consensus 61 -~~~~~---~~~aDlv~iavpDdaI~~va~~La~~ 91 (127)
T PF10727_consen 61 -DLEEI---LRDADLVFIAVPDDAIAEVAEQLAQY 91 (127)
T ss_dssp --TTGG---GCC-SEEEE-S-CCHHHHHHHHHHCC
T ss_pred -ccccc---cccCCEEEEEechHHHHHHHHHHHHh
Confidence 34443 35899999999998877777777665
No 72
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=97.42 E-value=0.00058 Score=62.66 Aligned_cols=98 Identities=23% Similarity=0.175 Sum_probs=56.7
Q ss_pred CCCCCeeEEEEEecCHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEE
Q 022491 1 MAGDKKIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVA 80 (296)
Q Consensus 1 m~~~m~i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~ 80 (296)
|+.++..||+|+|+|.+|..+++.|.......-+.+.++ +.+..... .. . + +. ..
T Consensus 1 ~~~~~~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr--~~~~~~~a---~~-~-----g---------~~-----~~ 55 (307)
T PRK07502 1 MSAPLFDRVALIGIGLIGSSLARAIRRLGLAGEIVGADR--SAETRARA---RE-L-----G---------LG-----DR 55 (307)
T ss_pred CCccCCcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEEC--CHHHHHHH---Hh-C-----C---------CC-----ce
Confidence 777766799999999999999999987653222344455 22211110 00 0 0 00 00
Q ss_pred EEecCCCCCCCcccCCCcEEEEccCCccCHHHHHHHH---HCCCCeEEeeCCC
Q 022491 81 VFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHL---KGGAKKVVISAPS 130 (296)
Q Consensus 81 ~~~~~d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l---~~G~k~vvid~~~ 130 (296)
+. .++++. ..++|+||.|+|.....+..+.+. +.|. +|+|.++
T Consensus 56 ~~--~~~~~~---~~~aDvViiavp~~~~~~v~~~l~~~l~~~~--iv~dvgs 101 (307)
T PRK07502 56 VT--TSAAEA---VKGADLVILCVPVGASGAVAAEIAPHLKPGA--IVTDVGS 101 (307)
T ss_pred ec--CCHHHH---hcCCCEEEECCCHHHHHHHHHHHHhhCCCCC--EEEeCcc
Confidence 11 122222 247899999999876655555443 3454 6777655
No 73
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=97.41 E-value=0.00035 Score=65.80 Aligned_cols=123 Identities=20% Similarity=0.269 Sum_probs=74.8
Q ss_pred eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEecCC
Q 022491 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRN 86 (296)
Q Consensus 7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~~d 86 (296)
+||-|+|+|.+|+.+++.|.++.+.+| .|+|+ +.+..+... +...++.. .+.+ ...+
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V-~iAdR--s~~~~~~i~--~~~~~~v~----------~~~v--------D~~d 58 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEV-TIADR--SKEKCARIA--ELIGGKVE----------ALQV--------DAAD 58 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceE-EEEeC--CHHHHHHHH--hhccccce----------eEEe--------cccC
Confidence 689999999999999999999887655 45566 333222211 12111111 0111 1112
Q ss_pred CCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCCCCCCCeEEcccChhccCCCCCeEEcCCcc
Q 022491 87 PEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKDAPMFVVGVNEKEYKPELDIVSNASCT 158 (296)
Q Consensus 87 ~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~~~d~~~~v~gvn~~~l~~~~~iIs~p~C~ 158 (296)
.+.+.-...+.|+||.|.|.+.....++.+++.|+ -++|.+....+. ..+.++.- .+.+.+.++|.
T Consensus 59 ~~al~~li~~~d~VIn~~p~~~~~~i~ka~i~~gv--~yvDts~~~~~~--~~~~~~a~--~Agit~v~~~G 124 (389)
T COG1748 59 VDALVALIKDFDLVINAAPPFVDLTILKACIKTGV--DYVDTSYYEEPP--WKLDEEAK--KAGITAVLGCG 124 (389)
T ss_pred hHHHHHHHhcCCEEEEeCCchhhHHHHHHHHHhCC--CEEEcccCCchh--hhhhHHHH--HcCeEEEcccC
Confidence 21110012467999999999999999999999999 677776543331 33332222 46667777775
No 74
>PRK06813 homoserine dehydrogenase; Validated
Probab=97.39 E-value=0.00056 Score=63.78 Aligned_cols=35 Identities=26% Similarity=0.457 Sum_probs=29.4
Q ss_pred CeeEEEEEecCHHHHHHHHHHHcC---------CCcEEEEEecC
Q 022491 5 KKIKIGINGFGRIGRLVARVALQR---------DDVELVAVNDP 39 (296)
Q Consensus 5 m~i~vgI~G~G~iG~~l~r~l~~~---------p~~elv~i~~~ 39 (296)
|+++|+|+|+|.+|+.++++|.++ -+++|++|.++
T Consensus 1 ~~i~I~liG~G~VG~~~~~~L~~~~~~l~~~~g~~l~v~~i~~~ 44 (346)
T PRK06813 1 MKIKVVLSGYGTVGREFIKLLNEKYLYINETYGIDLVVSGVLGR 44 (346)
T ss_pred CeeEEEEEecChhHHHHHHHHHHhHHHHHHhcCCcEEEEEEEec
Confidence 468999999999999999998653 25889999865
No 75
>COG2344 AT-rich DNA-binding protein [General function prediction only]
Probab=97.39 E-value=0.00024 Score=59.77 Aligned_cols=91 Identities=21% Similarity=0.364 Sum_probs=63.1
Q ss_pred eeEEEEEecCHHHHHHHHHHHc-CCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEec
Q 022491 6 KIKIGINGFGRIGRLVARVALQ-RDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGF 84 (296)
Q Consensus 6 ~i~vgI~G~G~iG~~l~r~l~~-~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~ 84 (296)
+.++.|+|+|.+|+.++..-.. +.+++++++.|. +++.+ .. . +++ +++..-
T Consensus 84 ~tnviiVG~GnlG~All~Y~f~~~~~~~iv~~FDv--~~~~V------G~----~--------------~~~--v~V~~~ 135 (211)
T COG2344 84 TTNVIIVGVGNLGRALLNYNFSKKNGMKIVAAFDV--DPDKV------GT----K--------------IGD--VPVYDL 135 (211)
T ss_pred ceeEEEEccChHHHHHhcCcchhhcCceEEEEecC--CHHHh------Cc----c--------------cCC--eeeech
Confidence 4899999999999988765443 567999999986 33211 11 0 111 333332
Q ss_pred CCCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEE
Q 022491 85 RNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVV 125 (296)
Q Consensus 85 ~d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vv 125 (296)
.+.+.+ ....++|+++.|.|...+.+.+..+.++|+|.++
T Consensus 136 d~le~~-v~~~dv~iaiLtVPa~~AQ~vad~Lv~aGVkGIl 175 (211)
T COG2344 136 DDLEKF-VKKNDVEIAILTVPAEHAQEVADRLVKAGVKGIL 175 (211)
T ss_pred HHHHHH-HHhcCccEEEEEccHHHHHHHHHHHHHcCCceEE
Confidence 234433 1235899999999999999999999999998643
No 76
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=97.18 E-value=0.001 Score=62.03 Aligned_cols=92 Identities=20% Similarity=0.182 Sum_probs=59.2
Q ss_pred eeEEEEEecCHHHHHHHHHHHcCC-CcEEEEEecCCCCh-hhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEe
Q 022491 6 KIKIGINGFGRIGRLVARVALQRD-DVELVAVNDPFIST-DYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFG 83 (296)
Q Consensus 6 ~i~vgI~G~G~iG~~l~r~l~~~p-~~elv~i~~~~~~~-~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~ 83 (296)
++||||+|+ ++|+..++.+.+.| ++|+++|.|+..+. +.+ ...|+ ++.+.
T Consensus 3 ~~rVgViG~-~~G~~h~~al~~~~~~~eLvaV~d~~~erA~~~------A~~~g---------------------i~~y~ 54 (343)
T TIGR01761 3 VQSVVVCGT-RFGQFYLAAFAAAPERFELAGILAQGSERSRAL------AHRLG---------------------VPLYC 54 (343)
T ss_pred CcEEEEEeH-HHHHHHHHHHHhCCCCcEEEEEEcCCHHHHHHH------HHHhC---------------------CCccC
Confidence 389999999 56999999999988 89999999873221 111 11111 00111
Q ss_pred cCCCCCCCcccCCCcEEEE--ccCCccCHHHHHHHHHCCCCeEEeeCC
Q 022491 84 FRNPEEIPWAKTGAEYVVE--STGVFTDKDKAAAHLKGGAKKVVISAP 129 (296)
Q Consensus 84 ~~d~~~i~~~~~~~DvV~~--at~~~~~~~~~~~~l~~G~k~vvid~~ 129 (296)
+.+++. .+.++|+|.. ++|++.+.+.+.+++++|. .|++--|
T Consensus 55 --~~eell-~d~Di~~V~ipt~~P~~~H~e~a~~aL~aGk-HVL~EKP 98 (343)
T TIGR01761 55 --EVEELP-DDIDIACVVVRSAIVGGQGSALARALLARGI-HVLQEHP 98 (343)
T ss_pred --CHHHHh-cCCCEEEEEeCCCCCCccHHHHHHHHHhCCC-eEEEcCC
Confidence 344441 1234455554 3366788999999999996 4666544
No 77
>PRK05472 redox-sensing transcriptional repressor Rex; Provisional
Probab=97.16 E-value=0.00082 Score=58.45 Aligned_cols=91 Identities=18% Similarity=0.280 Sum_probs=59.4
Q ss_pred eEEEEEecCHHHHHHHHHHH-cCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEecC
Q 022491 7 IKIGINGFGRIGRLVARVAL-QRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFR 85 (296)
Q Consensus 7 i~vgI~G~G~iG~~l~r~l~-~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~~ 85 (296)
.||+|+|+|.+|+.+++.+. ..+.++++++.|. +++.... . +++.. +....
T Consensus 85 ~rV~IIGaG~iG~~l~~~~~~~~~g~~ivgv~D~--d~~~~~~-----~-------------------i~g~~--v~~~~ 136 (213)
T PRK05472 85 WNVALVGAGNLGRALLNYNGFEKRGFKIVAAFDV--DPEKIGT-----K-------------------IGGIP--VYHID 136 (213)
T ss_pred cEEEEECCCHHHHHHHHhhhcccCCcEEEEEEEC--ChhhcCC-----E-------------------eCCeE--EcCHH
Confidence 78999999999999998643 3457999999876 3321000 0 01111 11111
Q ss_pred CCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEe
Q 022491 86 NPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVI 126 (296)
Q Consensus 86 d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvi 126 (296)
+.+++ ....++|+|+.|+|.....+.+..++++|.+.++.
T Consensus 137 ~l~~l-i~~~~iD~ViIa~P~~~~~~i~~~l~~~Gi~~il~ 176 (213)
T PRK05472 137 ELEEV-VKENDIEIGILTVPAEAAQEVADRLVEAGIKGILN 176 (213)
T ss_pred HHHHH-HHHCCCCEEEEeCCchhHHHHHHHHHHcCCCEEee
Confidence 22332 12347999999999998888888899999864433
No 78
>TIGR02130 dapB_plant dihydrodipicolinate reductase. This narrow family includes genes from Arabidopsis and Fibrobacter succinogenes (which probably recieved the gene from a plant via lateral gene transfer). The sequences are distantly related to the dihydrodipicolinate reductases from archaea. In Fibrobacter this gene is the only candidate DHPR in the genome.
Probab=97.09 E-value=0.0013 Score=59.13 Aligned_cols=88 Identities=24% Similarity=0.214 Sum_probs=57.5
Q ss_pred eEEEEEec-CHHHHHHHHHHHcCCCcEEEEE-ecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEec
Q 022491 7 IKIGINGF-GRIGRLVARVALQRDDVELVAV-NDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGF 84 (296)
Q Consensus 7 i~vgI~G~-G~iG~~l~r~l~~~p~~elv~i-~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~ 84 (296)
+||.|+|+ |++|+++++++.+ ++++||+. .++....++... +.+..+++..+
T Consensus 1 ~~V~V~Ga~GkMG~~v~~av~~-~~~~Lv~~~~~~~~~~~~~~~-------------------------~~g~~v~v~~~ 54 (275)
T TIGR02130 1 IQIMVNGCPGKMGKAVAEAADA-AGLEIVPTSFGGEEEAENEAE-------------------------VAGKEILLHGP 54 (275)
T ss_pred CeEEEeCCCChHHHHHHHHHhc-CCCEEEeeEccccccccchhh-------------------------hcccceeeecc
Confidence 58999999 9999999999888 89999997 443111111100 01112333211
Q ss_pred ----CCCCCCCcccCCCc-EEEEccCCccCHHHHHHHHHCCCC
Q 022491 85 ----RNPEEIPWAKTGAE-YVVESTGVFTDKDKAAAHLKGGAK 122 (296)
Q Consensus 85 ----~d~~~i~~~~~~~D-vV~~at~~~~~~~~~~~~l~~G~k 122 (296)
.+++++. ...+| ++||-|-.....+.+..+++.|+.
T Consensus 55 ~~~~~~l~~~~--~~~~d~VvIDFT~P~~~~~n~~~~~~~gv~ 95 (275)
T TIGR02130 55 SEREARIGEVF--AKYPELICIDYTHPSAVNDNAAFYGKHGIP 95 (275)
T ss_pred ccccccHHHHH--hhcCCEEEEECCChHHHHHHHHHHHHCCCC
Confidence 1233331 12378 999999888888999999999985
No 79
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=97.08 E-value=0.0013 Score=58.84 Aligned_cols=93 Identities=19% Similarity=0.171 Sum_probs=53.9
Q ss_pred CeeEEEEEecCHHHHHHHHHHHcCC-CcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEe
Q 022491 5 KKIKIGINGFGRIGRLVARVALQRD-DVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFG 83 (296)
Q Consensus 5 m~i~vgI~G~G~iG~~l~r~l~~~p-~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~ 83 (296)
||+||+|+|+|.+|..+++.|.+.. ....+.+.++ +.+....+ ...++ + .+.
T Consensus 1 ~mm~I~iIG~G~mG~~la~~l~~~g~~~~~v~v~~r--~~~~~~~~---~~~~g--------------~-------~~~- 53 (267)
T PRK11880 1 MMKKIGFIGGGNMASAIIGGLLASGVPAKDIIVSDP--SPEKRAAL---AEEYG--------------V-------RAA- 53 (267)
T ss_pred CCCEEEEEechHHHHHHHHHHHhCCCCcceEEEEcC--CHHHHHHH---HHhcC--------------C-------eec-
Confidence 4579999999999999999887653 2234455555 22211111 11000 1 011
Q ss_pred cCCCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCC
Q 022491 84 FRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAP 129 (296)
Q Consensus 84 ~~d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~ 129 (296)
.+.+++ ..++|+||.|++.....+.++.+.... +++|++..
T Consensus 54 -~~~~~~---~~~advVil~v~~~~~~~v~~~l~~~~-~~~vvs~~ 94 (267)
T PRK11880 54 -TDNQEA---AQEADVVVLAVKPQVMEEVLSELKGQL-DKLVVSIA 94 (267)
T ss_pred -CChHHH---HhcCCEEEEEcCHHHHHHHHHHHHhhc-CCEEEEec
Confidence 123332 247899999999987777766654432 23667654
No 80
>COG0460 ThrA Homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=97.05 E-value=0.0028 Score=58.45 Aligned_cols=98 Identities=27% Similarity=0.375 Sum_probs=59.2
Q ss_pred CeeEEEEEecCHHHHHHHHHHHcC---------CCcEEEEEecCCCChhhhhhcccccccC-CCCcCcceeeeCCceeEE
Q 022491 5 KKIKIGINGFGRIGRLVARVALQR---------DDVELVAVNDPFISTDYMTYMFKYDSVH-GQWKHNELKVKDEKTLLF 74 (296)
Q Consensus 5 m~i~vgI~G~G~iG~~l~r~l~~~---------p~~elv~i~~~~~~~~~~a~~l~~~s~~-~~~~~~~v~~~~~~~l~~ 74 (296)
|++||+|+|+|-+|+.++|+|.++ -++++++|.+++.... + .++-.- ..|. .++ .+
T Consensus 2 ~~v~v~l~G~G~VG~~~~~il~~~~~~l~~~~g~~i~v~~v~~~~~~~~---~--~~~~~~~~~~~------~~~-~~-- 67 (333)
T COG0460 2 KTVKVGLLGLGTVGSGVLEILAEKQEELRKRAGIEIRVVAVADRDGSLV---R--DLDLLNAEVWT------TDG-AL-- 67 (333)
T ss_pred ceEEEEEEccCchhHHHHHHHHHhHHHHHhhcCCceEEEEEEeccchhc---c--cccccchhhhe------ecc-cc--
Confidence 469999999999999999999874 2588889887622211 0 001000 0010 000 00
Q ss_pred CCEEEEEEecCCCCCCCcccCCCcEEEEccCC--ccCH--HHHHHHHHCCCCeEEeeCC
Q 022491 75 GEKPVAVFGFRNPEEIPWAKTGAEYVVESTGV--FTDK--DKAAAHLKGGAKKVVISAP 129 (296)
Q Consensus 75 ~~~~i~~~~~~d~~~i~~~~~~~DvV~~at~~--~~~~--~~~~~~l~~G~k~vvid~~ 129 (296)
. .+ .++.+ ..++|+|++++|. ..+. ++..++++.|. .||.+.
T Consensus 68 --------~-~~-~~~~~-~~~~dvvve~~~~d~~~~~~~~~~~~al~~Gk--hVVTaN 113 (333)
T COG0460 68 --------S-LG-DEVLL-DEDIDVVVELVGGDVEPAEPADLYLKALENGK--HVVTAN 113 (333)
T ss_pred --------c-cc-Hhhhc-cccCCEEEecCcccCCchhhHHHHHHHHHcCC--eEECCC
Confidence 0 01 22222 4678999999997 2233 57788899997 677653
No 81
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=97.00 E-value=0.0013 Score=49.21 Aligned_cols=90 Identities=26% Similarity=0.266 Sum_probs=54.0
Q ss_pred EEEEEecCHHHHHHHHHHHcCC--CcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEecC
Q 022491 8 KIGINGFGRIGRLVARVALQRD--DVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFR 85 (296)
Q Consensus 8 ~vgI~G~G~iG~~l~r~l~~~p--~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~~ 85 (296)
||||+|+|.+|..+++.|.++. .-++..++++ +.+...++. ..++ . .++..
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r--~~~~~~~~~---~~~~--------------~-------~~~~~- 53 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSR--SPEKAAELA---KEYG--------------V-------QATAD- 53 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEES--SHHHHHHHH---HHCT--------------T-------EEESE-
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccC--cHHHHHHHH---Hhhc--------------c-------ccccC-
Confidence 7999999999999999998875 3566555555 443332221 1111 0 01110
Q ss_pred CCCCCCcccCCCcEEEEccCCccCHHHHHHH--HHCCCCeEEeeCC
Q 022491 86 NPEEIPWAKTGAEYVVESTGVFTDKDKAAAH--LKGGAKKVVISAP 129 (296)
Q Consensus 86 d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~--l~~G~k~vvid~~ 129 (296)
+..++ ..+.|+||.|.+.....+.+..+ ...+. .+||..
T Consensus 54 ~~~~~---~~~advvilav~p~~~~~v~~~i~~~~~~~--~vis~~ 94 (96)
T PF03807_consen 54 DNEEA---AQEADVVILAVKPQQLPEVLSEIPHLLKGK--LVISIA 94 (96)
T ss_dssp EHHHH---HHHTSEEEE-S-GGGHHHHHHHHHHHHTTS--EEEEES
T ss_pred ChHHh---hccCCEEEEEECHHHHHHHHHHHhhccCCC--EEEEeC
Confidence 12222 23689999999998888777665 44555 788753
No 82
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=96.96 E-value=0.0014 Score=62.07 Aligned_cols=98 Identities=22% Similarity=0.376 Sum_probs=57.2
Q ss_pred EEEEecCHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEecCCCC
Q 022491 9 IGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPE 88 (296)
Q Consensus 9 vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~~d~~ 88 (296)
|.|+|+|++|+.+++.|.+++.++-+.+.++ +.+.+..+. ++..+ .. +. .......|++
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r--~~~~~~~~~--~~~~~----~~--------~~-----~~~~d~~~~~ 59 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGPFEEVTVADR--NPEKAERLA--EKLLG----DR--------VE-----AVQVDVNDPE 59 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTCE-EEEEEES--SHHHHHHHH--T--TT----TT--------EE-----EEE--TTTHH
T ss_pred CEEEcCcHHHHHHHHHHhcCCCCCcEEEEEC--CHHHHHHHH--hhccc----cc--------ee-----EEEEecCCHH
Confidence 6899999999999999999998855666666 333222221 11000 00 10 0011111222
Q ss_pred CCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCC
Q 022491 89 EIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAP 129 (296)
Q Consensus 89 ~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~ 129 (296)
++.=...+.|+|+.|+|.+.....++.+++.|+ -.+|.+
T Consensus 60 ~l~~~~~~~dvVin~~gp~~~~~v~~~~i~~g~--~yvD~~ 98 (386)
T PF03435_consen 60 SLAELLRGCDVVINCAGPFFGEPVARACIEAGV--HYVDTS 98 (386)
T ss_dssp HHHHHHTTSSEEEE-SSGGGHHHHHHHHHHHT---EEEESS
T ss_pred HHHHHHhcCCEEEECCccchhHHHHHHHHHhCC--Ceeccc
Confidence 221113588999999999988889999999999 678744
No 83
>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases.; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....
Probab=96.83 E-value=0.0011 Score=50.14 Aligned_cols=89 Identities=19% Similarity=0.275 Sum_probs=59.1
Q ss_pred eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEecCC
Q 022491 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRN 86 (296)
Q Consensus 7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~~d 86 (296)
.|+.|+|+|..|+.++........++++++.|. +++.. .+ .+++ ++++. +
T Consensus 4 ~~v~ivGag~~G~a~~~~~~~~~g~~i~~~~dv--~~~~~------G~------------------~i~g--ipV~~--~ 53 (96)
T PF02629_consen 4 TNVIIVGAGNLGRALLYNGFSMRGFGIVAVFDV--DPEKI------GK------------------EIGG--IPVYG--S 53 (96)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHHCECEEEEEEE--CTTTT------TS------------------EETT--EEEES--S
T ss_pred CeEEEECCCCcHHHHHHhHHHHcCCCCEEEEEc--CCCcc------Cc------------------EECC--EEeec--c
Confidence 789999999999988865666667889888876 33210 11 1111 34552 1
Q ss_pred CCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEe
Q 022491 87 PEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVI 126 (296)
Q Consensus 87 ~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvi 126 (296)
.+++.-.. ++|+.+.|.|.....+.+.+++++|.|.++.
T Consensus 54 ~~~l~~~~-~i~iaii~VP~~~a~~~~~~~~~~gIk~i~n 92 (96)
T PF02629_consen 54 MDELEEFI-EIDIAIITVPAEAAQEVADELVEAGIKGIVN 92 (96)
T ss_dssp HHHHHHHC-TTSEEEEES-HHHHHHHHHHHHHTT-SEEEE
T ss_pred HHHhhhhh-CCCEEEEEcCHHHHHHHHHHHHHcCCCEEEE
Confidence 22221001 4899999999999999999999999987654
No 84
>COG4091 Predicted homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=96.81 E-value=0.0029 Score=58.24 Aligned_cols=100 Identities=23% Similarity=0.335 Sum_probs=61.8
Q ss_pred eeEEEEEecCHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCccee----------eeCCceeEEC
Q 022491 6 KIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELK----------VKDEKTLLFG 75 (296)
Q Consensus 6 ~i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~----------~~~~~~l~~~ 75 (296)
.+|||+||+|.+|+-++-.+..-|.+++++|+++.-+....|+ +..+..=. ..+. .+.|+
T Consensus 17 PiRVGlIGAG~mG~~ivtQi~~m~Gm~vvaisd~~~~~ak~A~----~~ag~~~~-~~~e~~~~s~~a~Ai~aGK----- 86 (438)
T COG4091 17 PIRVGLIGAGEMGTGIVTQIASMPGMEVVAISDRNLDAAKRAY----DRAGGPKI-EAVEADDASKMADAIEAGK----- 86 (438)
T ss_pred ceEEEEecccccchHHHHHHhhcCCceEEEEecccchHHHHHH----HHhcCCcc-cccccchhhHHHHHHhcCc-----
Confidence 4999999999999999999999999999999988444433332 33221100 0000 01221
Q ss_pred CEEEEEEecCCCCCCCcccCCCcEEEEccCCccC-HHHHHHHHHCCC
Q 022491 76 EKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTD-KDKAAAHLKGGA 121 (296)
Q Consensus 76 ~~~i~~~~~~d~~~i~~~~~~~DvV~~at~~~~~-~~~~~~~l~~G~ 121 (296)
+.+. .|.+.+ .....+|++|++||+-.. .+....++..|.
T Consensus 87 ---i~vT--~D~~~i-~~~~~IdvIIdATG~p~vGA~~~l~Ai~h~K 127 (438)
T COG4091 87 ---IAVT--DDAELI-IANDLIDVIIDATGVPEVGAKIALEAILHGK 127 (438)
T ss_pred ---EEEe--cchhhh-hcCCcceEEEEcCCCcchhhHhHHHHHhcCC
Confidence 2222 134443 335689999999998443 345555555553
No 85
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=96.76 E-value=0.0026 Score=56.12 Aligned_cols=94 Identities=13% Similarity=0.125 Sum_probs=52.9
Q ss_pred eEEEEEecCHHHHHHHHHHHcCC--CcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEec
Q 022491 7 IKIGINGFGRIGRLVARVALQRD--DVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGF 84 (296)
Q Consensus 7 i~vgI~G~G~iG~~l~r~l~~~p--~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~ 84 (296)
+||+|+|+|.+|..+++.|.+++ .++.+.+.++ .+.+....+ ...+ . +...
T Consensus 5 ~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~-~~~~~~~~~---~~~~---~------------------~~~~-- 57 (245)
T PRK07634 5 HRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNR-SNVEKLDQL---QARY---N------------------VSTT-- 57 (245)
T ss_pred CeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECC-CCHHHHHHH---HHHc---C------------------cEEe--
Confidence 78999999999999999887654 4552333333 122211110 0000 0 0111
Q ss_pred CCCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCCC
Q 022491 85 RNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPS 130 (296)
Q Consensus 85 ~d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~~ 130 (296)
.+.+++ ..++|+||.|+|.....+.++.+...--.++||+..+
T Consensus 58 ~~~~~~---~~~~DiViiavp~~~~~~v~~~l~~~~~~~~vis~~~ 100 (245)
T PRK07634 58 TDWKQH---VTSVDTIVLAMPPSAHEELLAELSPLLSNQLVVTVAA 100 (245)
T ss_pred CChHHH---HhcCCEEEEecCHHHHHHHHHHHHhhccCCEEEEECC
Confidence 133332 2478999999999888777665532101236776543
No 86
>PRK05447 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional
Probab=96.66 E-value=0.0055 Score=57.69 Aligned_cols=111 Identities=19% Similarity=0.203 Sum_probs=65.1
Q ss_pred eEEEEEec-CHHHHHHHHHHHcCC-CcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCc---eeE--ECCEEE
Q 022491 7 IKIGINGF-GRIGRLVARVALQRD-DVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEK---TLL--FGEKPV 79 (296)
Q Consensus 7 i~vgI~G~-G~iG~~l~r~l~~~p-~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~---~l~--~~~~~i 79 (296)
.||+|+|+ |-||+..++.+.++| .+++++++.. .+.+.+.... ....|++- ...++. .+. ..+..+
T Consensus 2 k~VaILGsTGSIG~~tL~vi~~~p~~f~VvaLaa~-~n~~~l~~q~--~~f~p~~v----~i~~~~~~~~l~~~l~~~~~ 74 (385)
T PRK05447 2 KRITILGSTGSIGTQTLDVIRRNPDRFRVVALSAG-KNVELLAEQA--REFRPKYV----VVADEEAAKELKEALAAAGI 74 (385)
T ss_pred ceEEEEcCChHHHHHHHHHHHhCccccEEEEEEcC-CCHHHHHHHH--HHhCCCEE----EEcCHHHHHHHHHhhccCCc
Confidence 68999998 999999999999988 5999999854 4544332221 12122211 110100 000 001012
Q ss_pred EEEecC-CCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEe
Q 022491 80 AVFGFR-NPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVI 126 (296)
Q Consensus 80 ~~~~~~-d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvi 126 (296)
.++... ...++ ....++|+|+.+.+.+...+..-.++++|.+ +.+
T Consensus 75 ~v~~G~~~~~~l-~~~~~vD~Vv~Ai~G~aGl~ptl~Ai~aGK~-VaL 120 (385)
T PRK05447 75 EVLAGEEGLCEL-AALPEADVVVAAIVGAAGLLPTLAAIRAGKR-IAL 120 (385)
T ss_pred eEEEChhHHHHH-hcCCCCCEEEEeCcCcccHHHHHHHHHCCCc-EEE
Confidence 222211 12222 1124799999999998888888889999963 444
No 87
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.62 E-value=0.01 Score=53.93 Aligned_cols=158 Identities=16% Similarity=0.235 Sum_probs=76.8
Q ss_pred CCCCCeeEEEEEecCHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhcc-cccccCCCCc-CcceeeeCCceeEECCEE
Q 022491 1 MAGDKKIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMF-KYDSVHGQWK-HNELKVKDEKTLLFGEKP 78 (296)
Q Consensus 1 m~~~m~i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l-~~~s~~~~~~-~~~v~~~~~~~l~~~~~~ 78 (296)
|+..| .||||+|+|.+|..++..+..+. .+++.. |+ +.+.+.... +......++. .+......-... . ..
T Consensus 1 ~~~~~-~~V~ViGaG~mG~~iA~~~a~~G-~~V~l~-d~--~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~-~--~~ 72 (286)
T PRK07819 1 MSDAI-QRVGVVGAGQMGAGIAEVCARAG-VDVLVF-ET--TEELATAGRNRIEKSLERAVSRGKLTERERDAA-L--AR 72 (286)
T ss_pred CCCCc-cEEEEEcccHHHHHHHHHHHhCC-CEEEEE-EC--CHHHHHHHHHHHHHHHHHHHhcccCChhhHHHH-H--hC
Confidence 67664 58999999999999999888774 554444 44 222111100 0000000000 000000000000 0 11
Q ss_pred EEEEecCCCCCCCcccCCCcEEEEccCCccCHHH-----HHHHH-HCCCCeEEeeCCCC----------CCCeEEccc--
Q 022491 79 VAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDK-----AAAHL-KGGAKKVVISAPSK----------DAPMFVVGV-- 140 (296)
Q Consensus 79 i~~~~~~d~~~i~~~~~~~DvV~~at~~~~~~~~-----~~~~l-~~G~k~vvid~~~~----------d~~~~v~gv-- 140 (296)
+... .+++.+ .++|+||+|.+-....+. ++++. ..++ ++.|++|. ..|.-+.|+
T Consensus 73 l~~~--~~~~~~----~~~d~ViEav~E~~~~K~~l~~~l~~~~~~~~~--il~snTS~~~~~~la~~~~~~~r~~g~hf 144 (286)
T PRK07819 73 LRFT--TDLGDF----ADRQLVIEAVVEDEAVKTEIFAELDKVVTDPDA--VLASNTSSIPIMKLAAATKRPGRVLGLHF 144 (286)
T ss_pred eEee--CCHHHh----CCCCEEEEecccCHHHHHHHHHHHHHhhCCCCc--EEEECCCCCCHHHHHhhcCCCccEEEEec
Confidence 2222 244433 589999999998655432 23333 4455 78887664 123222232
Q ss_pred -ChhccCCCCCeEEcCCcchhhhHhHHHHHHhhcC
Q 022491 141 -NEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFG 174 (296)
Q Consensus 141 -n~~~l~~~~~iIs~p~C~~tal~~~l~~L~~~~g 174 (296)
|+..+-+...+|..+++....+.-+..-+.+..|
T Consensus 145 ~~P~~~~~lvElv~~~~T~~~~~~~~~~~~~~~lg 179 (286)
T PRK07819 145 FNPVPVLPLVELVPTLVTSEATVARAEEFASDVLG 179 (286)
T ss_pred CCCcccCceEEEeCCCCCCHHHHHHHHHHHHHhCC
Confidence 3333222345777666666665554444333333
No 88
>PRK08818 prephenate dehydrogenase; Provisional
Probab=96.53 E-value=0.0061 Score=57.42 Aligned_cols=121 Identities=17% Similarity=0.176 Sum_probs=74.9
Q ss_pred eEEEEEec-CHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEecC
Q 022491 7 IKIGINGF-GRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFR 85 (296)
Q Consensus 7 i~vgI~G~-G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~~ 85 (296)
.||+|+|. |.||+.+.+.|.+....+|.++ |+ .+ .. . .
T Consensus 5 ~~I~IIGl~GliGgslA~alk~~~~~~V~g~-D~-~d-----------~~--------------------------~--~ 43 (370)
T PRK08818 5 PVVGIVGSAGAYGRWLARFLRTRMQLEVIGH-DP-AD-----------PG--------------------------S--L 43 (370)
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCCEEEEE-cC-Cc-----------cc--------------------------c--C
Confidence 68999999 9999999999986445665543 33 11 00 0 0
Q ss_pred CCCCCCcccCCCcEEEEccCCccCHHHHHHHH------HCCCCeEEeeCCCC----------CCCeEEcccC---hhccC
Q 022491 86 NPEEIPWAKTGAEYVVESTGVFTDKDKAAAHL------KGGAKKVVISAPSK----------DAPMFVVGVN---EKEYK 146 (296)
Q Consensus 86 d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l------~~G~k~vvid~~~~----------d~~~~v~gvn---~~~l~ 146 (296)
++++. ..++|+||.|+|.....+..+++. +.|+ +|.|.+|- ..+.||-+-| +|.-.
T Consensus 44 ~~~~~---v~~aDlVilavPv~~~~~~l~~l~~~~~~l~~~~--iVtDVgSvK~~i~~~~~~~~~~fVG~HPMaG~E~s~ 118 (370)
T PRK08818 44 DPATL---LQRADVLIFSAPIRHTAALIEEYVALAGGRAAGQ--LWLDVTSIKQAPVAAMLASQAEVVGLHPMTAPPKSP 118 (370)
T ss_pred CHHHH---hcCCCEEEEeCCHHHHHHHHHHHhhhhcCCCCCe--EEEECCCCcHHHHHHHHhcCCCEEeeCCCCCCCCCc
Confidence 12221 247899999999988888777664 4566 89998774 1234665555 33211
Q ss_pred --CCCCeEEcCCcchhhhHhHHHHHHhhcC
Q 022491 147 --PELDIVSNASCTTNCLAPLAKVIHDKFG 174 (296)
Q Consensus 147 --~~~~iIs~p~C~~tal~~~l~~L~~~~g 174 (296)
++..+|-.|+-.... ...+.-|.+..|
T Consensus 119 lf~g~~~iltp~~~~~~-~~~v~~l~~~~G 147 (370)
T PRK08818 119 TLKGRVMVVCEARLQHW-SPWVQSLCSALQ 147 (370)
T ss_pred ccCCCeEEEeCCCchhH-HHHHHHHHHHcC
Confidence 256666666533322 334455555555
No 89
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=96.52 E-value=0.011 Score=53.56 Aligned_cols=89 Identities=15% Similarity=0.079 Sum_probs=52.5
Q ss_pred EEEEEecCHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEecCCC
Q 022491 8 KIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNP 87 (296)
Q Consensus 8 ~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~~d~ 87 (296)
||+|+|+|.+|+.+++.|.++. .++.++ ++ +.+.+.... . . +. + .... .+.
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g-~~V~~~-d~--~~~~~~~a~--~--~-----g~--------~-------~~~~-~~~ 52 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLG-HTVYGV-SR--RESTCERAI--E--R-----GL--------V-------DEAS-TDL 52 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCC-CEEEEE-EC--CHHHHHHHH--H--C-----CC--------c-------cccc-CCH
Confidence 7999999999999999998764 565554 44 222111111 0 0 00 0 0000 122
Q ss_pred CCCCcccCCCcEEEEccCCccCHHHHHHHHH---CCCCeEEeeCCCC
Q 022491 88 EEIPWAKTGAEYVVESTGVFTDKDKAAAHLK---GGAKKVVISAPSK 131 (296)
Q Consensus 88 ~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~---~G~k~vvid~~~~ 131 (296)
+. ..++|+||.|+|.....+..+++.. .++ ++.|.++-
T Consensus 53 ~~----~~~aDlVilavp~~~~~~~~~~l~~~l~~~~--ii~d~~Sv 93 (279)
T PRK07417 53 SL----LKDCDLVILALPIGLLLPPSEQLIPALPPEA--IVTDVGSV 93 (279)
T ss_pred hH----hcCCCEEEEcCCHHHHHHHHHHHHHhCCCCc--EEEeCcch
Confidence 22 2478999999998776666555543 344 77877653
No 90
>PRK08507 prephenate dehydrogenase; Validated
Probab=96.46 E-value=0.0084 Score=54.08 Aligned_cols=89 Identities=17% Similarity=0.173 Sum_probs=53.3
Q ss_pred EEEEEecCHHHHHHHHHHHcCCC-cEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEecCC
Q 022491 8 KIGINGFGRIGRLVARVALQRDD-VELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRN 86 (296)
Q Consensus 8 ~vgI~G~G~iG~~l~r~l~~~p~-~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~~d 86 (296)
||+|+|+|.+|..+++.|.+... .++.. .++ +.+...... + . + +. ... .+
T Consensus 2 ~I~iIG~G~mG~sla~~l~~~g~~~~v~~-~d~--~~~~~~~~~--~--~-----g---------~~------~~~--~~ 52 (275)
T PRK08507 2 KIGIIGLGLMGGSLGLALKEKGLISKVYG-YDH--NELHLKKAL--E--L-----G---------LV------DEI--VS 52 (275)
T ss_pred EEEEEccCHHHHHHHHHHHhcCCCCEEEE-EcC--CHHHHHHHH--H--C-----C---------CC------ccc--CC
Confidence 79999999999999999987643 35444 344 222111110 0 0 0 00 000 12
Q ss_pred CCCCCcccCCCcEEEEccCCccCHHHHHHHHH--CCCCeEEeeCCCC
Q 022491 87 PEEIPWAKTGAEYVVESTGVFTDKDKAAAHLK--GGAKKVVISAPSK 131 (296)
Q Consensus 87 ~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~--~G~k~vvid~~~~ 131 (296)
++++ .++|+||.|+|.....+.+..+.. .|. +|+|.++.
T Consensus 53 ~~~~----~~aD~Vilavp~~~~~~~~~~l~~l~~~~--iv~d~gs~ 93 (275)
T PRK08507 53 FEEL----KKCDVIFLAIPVDAIIEILPKLLDIKENT--TIIDLGST 93 (275)
T ss_pred HHHH----hcCCEEEEeCcHHHHHHHHHHHhccCCCC--EEEECccc
Confidence 3333 248999999999877777666543 444 78887653
No 91
>PLN02256 arogenate dehydrogenase
Probab=96.41 E-value=0.0087 Score=54.97 Aligned_cols=89 Identities=20% Similarity=0.395 Sum_probs=54.5
Q ss_pred eeEEEEEecCHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEecC
Q 022491 6 KIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFR 85 (296)
Q Consensus 6 ~i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~~ 85 (296)
++||+|+|+|.+|+.+++.|.+.+ .++.++... .....+. .+ | + ..+.
T Consensus 36 ~~kI~IIG~G~mG~slA~~L~~~G-~~V~~~d~~--~~~~~a~------~~------------g--v-------~~~~-- 83 (304)
T PLN02256 36 KLKIGIVGFGNFGQFLAKTFVKQG-HTVLATSRS--DYSDIAA------EL------------G--V-------SFFR-- 83 (304)
T ss_pred CCEEEEEeeCHHHHHHHHHHHhCC-CEEEEEECc--cHHHHHH------Hc------------C--C-------eeeC--
Confidence 479999999999999999998765 577655432 2111111 00 0 1 0111
Q ss_pred CCCCCCcccCCCcEEEEccCCccCHHHHHHH----HHCCCCeEEeeCCC
Q 022491 86 NPEEIPWAKTGAEYVVESTGVFTDKDKAAAH----LKGGAKKVVISAPS 130 (296)
Q Consensus 86 d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~----l~~G~k~vvid~~~ 130 (296)
+.+++- ..++|+||.|+|.....+...++ +..|+ +++|..+
T Consensus 84 ~~~e~~--~~~aDvVilavp~~~~~~vl~~l~~~~l~~~~--iviDv~S 128 (304)
T PLN02256 84 DPDDFC--EEHPDVVLLCTSILSTEAVLRSLPLQRLKRST--LFVDVLS 128 (304)
T ss_pred CHHHHh--hCCCCEEEEecCHHHHHHHHHhhhhhccCCCC--EEEecCC
Confidence 222220 13589999999987766666554 23455 8888776
No 92
>KOG4039 consensus Serine/threonine kinase TIP30/CC3 [Signal transduction mechanisms]
Probab=96.37 E-value=0.013 Score=49.17 Aligned_cols=33 Identities=15% Similarity=-0.028 Sum_probs=27.8
Q ss_pred eEEEEEec-CHHHHHHHHHHHcCCCcEEEEEecC
Q 022491 7 IKIGINGF-GRIGRLVARVALQRDDVELVAVNDP 39 (296)
Q Consensus 7 i~vgI~G~-G~iG~~l~r~l~~~p~~elv~i~~~ 39 (296)
+.+-|+|+ |..|+++++.+++.|.|.-|.+-.+
T Consensus 19 ~s~fvlGAtG~~G~~llk~~~E~~~FSKV~~i~R 52 (238)
T KOG4039|consen 19 MSGFVLGATGLCGGGLLKHAQEAPQFSKVYAILR 52 (238)
T ss_pred cceEEEeccccccHHHHHHHHhcccceeEEEEEe
Confidence 67899999 9999999999999999865555444
No 93
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=96.30 E-value=0.0067 Score=55.19 Aligned_cols=33 Identities=30% Similarity=0.545 Sum_probs=25.7
Q ss_pred CeeEEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491 5 KKIKIGINGFGRIGRLVARVALQRDDVELVAVNDP 39 (296)
Q Consensus 5 m~i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~ 39 (296)
|++||||+|+|.+|..+++.|.+.. .++. +.++
T Consensus 1 ~~~~IgviG~G~mG~~~a~~l~~~g-~~v~-~~d~ 33 (296)
T PRK11559 1 MTMKVGFIGLGIMGKPMSKNLLKAG-YSLV-VYDR 33 (296)
T ss_pred CCceEEEEccCHHHHHHHHHHHHCC-CeEE-EEcC
Confidence 4478999999999999999998754 5654 3454
No 94
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=96.27 E-value=0.015 Score=52.74 Aligned_cols=122 Identities=20% Similarity=0.257 Sum_probs=70.2
Q ss_pred eeEEEEEecCHHHHHHHHHHHcCC-CcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEec
Q 022491 6 KIKIGINGFGRIGRLVARVALQRD-DVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGF 84 (296)
Q Consensus 6 ~i~vgI~G~G~iG~~l~r~l~~~p-~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~ 84 (296)
+++|+|+|+|.||+.++|.|.... .+.+.... . +.+.+.. ... + + +.. . ..
T Consensus 3 ~~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d-~--~~~~~~~-----a~~--l--g---------v~d--~---~~-- 54 (279)
T COG0287 3 SMKVGIVGLGLMGGSLARALKEAGLVVRIIGRD-R--SAATLKA-----ALE--L--G---------VID--E---LT-- 54 (279)
T ss_pred CcEEEEECCchHHHHHHHHHHHcCCeEEEEeec-C--cHHHHHH-----Hhh--c--C---------ccc--c---cc--
Confidence 478999999999999999998754 34454442 2 2211100 000 0 0 100 0 00
Q ss_pred CCCCCCCcccCCCcEEEEccCCccCHHHHHHH---HHCCCCeEEeeCCCC---------C-CC---eEEcccC---hh--
Q 022491 85 RNPEEIPWAKTGAEYVVESTGVFTDKDKAAAH---LKGGAKKVVISAPSK---------D-AP---MFVVGVN---EK-- 143 (296)
Q Consensus 85 ~d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~---l~~G~k~vvid~~~~---------d-~~---~~v~gvn---~~-- 143 (296)
.+.... + ..+.|+||.|+|...+.+.++++ ++.|+ .|.|..|. . .| .++.+-| ++
T Consensus 55 ~~~~~~-~-~~~aD~VivavPi~~~~~~l~~l~~~l~~g~--iv~Dv~S~K~~v~~a~~~~~~~~~~~vg~HPM~G~~~~ 130 (279)
T COG0287 55 VAGLAE-A-AAEADLVIVAVPIEATEEVLKELAPHLKKGA--IVTDVGSVKSSVVEAMEKYLPGDVRFVGGHPMFGPEAD 130 (279)
T ss_pred cchhhh-h-cccCCEEEEeccHHHHHHHHHHhcccCCCCC--EEEecccccHHHHHHHHHhccCCCeeEecCCCCCCccc
Confidence 011011 1 24689999999998888777665 45788 88887764 0 11 4666665 31
Q ss_pred --ccCCCCCeEEcCCcchh
Q 022491 144 --EYKPELDIVSNASCTTN 160 (296)
Q Consensus 144 --~l~~~~~iIs~p~C~~t 160 (296)
.+. +..+|=.|+-.+-
T Consensus 131 ~~lf~-~~~~vltp~~~~~ 148 (279)
T COG0287 131 AGLFE-NAVVVLTPSEGTE 148 (279)
T ss_pred ccccC-CCEEEEcCCCCCC
Confidence 122 5677777776544
No 95
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=96.24 E-value=0.0064 Score=55.42 Aligned_cols=91 Identities=21% Similarity=0.236 Sum_probs=52.2
Q ss_pred eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEecCC
Q 022491 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRN 86 (296)
Q Consensus 7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~~d 86 (296)
.+++|+|+|.+|+.+++.|..+. +++... ++ +.+..+... . . + . . .+...+
T Consensus 152 k~v~IiG~G~iG~avA~~L~~~G-~~V~v~-~R--~~~~~~~~~---~-~------------g--~----~---~~~~~~ 202 (287)
T TIGR02853 152 SNVMVLGFGRTGMTIARTFSALG-ARVFVG-AR--SSADLARIT---E-M------------G--L----I---PFPLNK 202 (287)
T ss_pred CEEEEEcChHHHHHHHHHHHHCC-CEEEEE-eC--CHHHHHHHH---H-C------------C--C----e---eecHHH
Confidence 58999999999999999999876 565544 44 222111110 0 0 0 0 0 000001
Q ss_pred CCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCCCC
Q 022491 87 PEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSK 131 (296)
Q Consensus 87 ~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~~~ 131 (296)
.++. ..+.|+||.|+|.....+..-..++.++ ++||.++.
T Consensus 203 l~~~---l~~aDiVint~P~~ii~~~~l~~~k~~a--liIDlas~ 242 (287)
T TIGR02853 203 LEEK---VAEIDIVINTIPALVLTADVLSKLPKHA--VIIDLASK 242 (287)
T ss_pred HHHH---hccCCEEEECCChHHhCHHHHhcCCCCe--EEEEeCcC
Confidence 2222 2578999999997642222223345566 88987764
No 96
>PLN02700 homoserine dehydrogenase family protein
Probab=96.20 E-value=0.021 Score=53.90 Aligned_cols=35 Identities=31% Similarity=0.475 Sum_probs=28.7
Q ss_pred CeeEEEEEecCHHHHHHHHHHHcCC--------CcEEEEEecC
Q 022491 5 KKIKIGINGFGRIGRLVARVALQRD--------DVELVAVNDP 39 (296)
Q Consensus 5 m~i~vgI~G~G~iG~~l~r~l~~~p--------~~elv~i~~~ 39 (296)
|+++|+|+|+|.+|+.|+++|.+.. ++++++|++.
T Consensus 2 ~~i~i~liG~G~VG~~ll~ql~~~~~~~~~~gi~l~v~~ia~s 44 (377)
T PLN02700 2 KKIPVLLLGCGGVGRHLLRHIVSCRSLHAKQGVRIRVVGVCDS 44 (377)
T ss_pred cEEEEEEEecChHHHHHHHHHHHHHHHHHhcCceEEEEEEECC
Confidence 4589999999999999999986532 4788899764
No 97
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=96.20 E-value=0.017 Score=50.73 Aligned_cols=33 Identities=33% Similarity=0.616 Sum_probs=29.9
Q ss_pred eeEEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491 6 KIKIGINGFGRIGRLVARVALQRDDVELVAVNDP 39 (296)
Q Consensus 6 ~i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~ 39 (296)
.+||+|.|+|.+|+.+++.|.+. .+++++|+|.
T Consensus 31 ~~~v~I~G~G~VG~~~a~~L~~~-g~~vv~v~D~ 63 (227)
T cd01076 31 GARVAIQGFGNVGSHAARFLHEA-GAKVVAVSDS 63 (227)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC-CCEEEEEECC
Confidence 47999999999999999999887 5999999875
No 98
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=96.13 E-value=0.017 Score=52.19 Aligned_cols=91 Identities=15% Similarity=0.215 Sum_probs=52.3
Q ss_pred eeEEEEEecCHHHHHHHHHHHcCCC--cEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEe
Q 022491 6 KIKIGINGFGRIGRLVARVALQRDD--VELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFG 83 (296)
Q Consensus 6 ~i~vgI~G~G~iG~~l~r~l~~~p~--~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~ 83 (296)
.+||||+|+|.+|..+++.|.+... .+-+.+.++ +.+.+..+. +. ++ . ....
T Consensus 2 ~~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r--~~~~~~~l~--~~-~g--------------~-------~~~~ 55 (272)
T PRK12491 2 NKQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDL--NVSNLKNAS--DK-YG--------------I-------TITT 55 (272)
T ss_pred CCeEEEECccHHHHHHHHHHHHCCCCCCceEEEECC--CHHHHHHHH--Hh-cC--------------c-------EEeC
Confidence 3689999999999999999987542 222344454 332211111 00 10 0 0111
Q ss_pred cCCCCCCCcccCCCcEEEEccCCccCHHHHHHHH---HCCCCeEEeeCC
Q 022491 84 FRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHL---KGGAKKVVISAP 129 (296)
Q Consensus 84 ~~d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l---~~G~k~vvid~~ 129 (296)
+..++ ..++|+||.|++.....+.++.+. +.+. ++||.-
T Consensus 56 --~~~e~---~~~aDiIiLavkP~~~~~vl~~l~~~~~~~~--lvISi~ 97 (272)
T PRK12491 56 --NNNEV---ANSADILILSIKPDLYSSVINQIKDQIKNDV--IVVTIA 97 (272)
T ss_pred --CcHHH---HhhCCEEEEEeChHHHHHHHHHHHHhhcCCc--EEEEeC
Confidence 23333 247899999999876666555543 3343 788753
No 99
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=96.09 E-value=0.0041 Score=51.66 Aligned_cols=32 Identities=34% Similarity=0.537 Sum_probs=23.5
Q ss_pred eeEEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491 6 KIKIGINGFGRIGRLVARVALQRDDVELVAVNDP 39 (296)
Q Consensus 6 ~i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~ 39 (296)
|+|||++|+|.+|..+++.|.++. .++. +.++
T Consensus 1 m~~Ig~IGlG~mG~~~a~~L~~~g-~~v~-~~d~ 32 (163)
T PF03446_consen 1 MMKIGFIGLGNMGSAMARNLAKAG-YEVT-VYDR 32 (163)
T ss_dssp -BEEEEE--SHHHHHHHHHHHHTT-TEEE-EEES
T ss_pred CCEEEEEchHHHHHHHHHHHHhcC-CeEE-eecc
Confidence 379999999999999999998775 5654 4455
No 100
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=96.01 E-value=0.0076 Score=50.32 Aligned_cols=29 Identities=34% Similarity=0.462 Sum_probs=26.0
Q ss_pred EEEEec-CHHHHHHHHHHHcCCCcEEEEEec
Q 022491 9 IGINGF-GRIGRLVARVALQRDDVELVAVND 38 (296)
Q Consensus 9 vgI~G~-G~iG~~l~r~l~~~p~~elv~i~~ 38 (296)
|.|.|+ |++|+.+++.|.+++ .++.++.-
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~-~~V~~~~R 30 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRG-HEVTALVR 30 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTT-SEEEEEES
T ss_pred eEEECCCChHHHHHHHHHHHCC-CEEEEEec
Confidence 689999 999999999999987 88888863
No 101
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=95.96 E-value=0.068 Score=45.24 Aligned_cols=30 Identities=37% Similarity=0.562 Sum_probs=25.6
Q ss_pred eEEEEEec-CHHHHHHHHHHHcCCCcEEEEEe
Q 022491 7 IKIGINGF-GRIGRLVARVALQRDDVELVAVN 37 (296)
Q Consensus 7 i~vgI~G~-G~iG~~l~r~l~~~p~~elv~i~ 37 (296)
|||||+|+ |.+|.+++.-+..+. -|+++|.
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~RG-HeVTAiv 31 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKRG-HEVTAIV 31 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhCC-CeeEEEE
Confidence 48999999 999999998887765 6788886
No 102
>CHL00194 ycf39 Ycf39; Provisional
Probab=95.90 E-value=0.029 Score=51.43 Aligned_cols=30 Identities=23% Similarity=0.437 Sum_probs=25.6
Q ss_pred eEEEEEec-CHHHHHHHHHHHcCCCcEEEEEe
Q 022491 7 IKIGINGF-GRIGRLVARVALQRDDVELVAVN 37 (296)
Q Consensus 7 i~vgI~G~-G~iG~~l~r~l~~~p~~elv~i~ 37 (296)
|||.|.|+ |++|+.+++.|.++. .++.++.
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~~g-~~V~~l~ 31 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALDEG-YQVRCLV 31 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCC-CeEEEEE
Confidence 37999999 999999999999875 5777775
No 103
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=95.89 E-value=0.012 Score=52.48 Aligned_cols=32 Identities=31% Similarity=0.367 Sum_probs=24.9
Q ss_pred EEEEEecCHHHHHHHHHHHcCC-CcEEEEEecC
Q 022491 8 KIGINGFGRIGRLVARVALQRD-DVELVAVNDP 39 (296)
Q Consensus 8 ~vgI~G~G~iG~~l~r~l~~~p-~~elv~i~~~ 39 (296)
||||+|+|.+|+.+++.|.+.. ..+.+.+.++
T Consensus 2 ~IgiIG~G~mG~aia~~L~~~g~~~~~i~v~~r 34 (258)
T PRK06476 2 KIGFIGTGAITEAMVTGLLTSPADVSEIIVSPR 34 (258)
T ss_pred eEEEECcCHHHHHHHHHHHhCCCChheEEEECC
Confidence 7999999999999999988754 3444556555
No 104
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=95.83 E-value=0.017 Score=52.79 Aligned_cols=91 Identities=16% Similarity=0.219 Sum_probs=52.2
Q ss_pred eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEecCC
Q 022491 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRN 86 (296)
Q Consensus 7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~~d 86 (296)
.||+|+|+|.+|+.+++.|.... .++..+ ++ +...... ..+ ++ . + .....+
T Consensus 153 ~kvlViG~G~iG~~~a~~L~~~G-a~V~v~-~r--~~~~~~~---~~~-~G--------------~----~---~~~~~~ 203 (296)
T PRK08306 153 SNVLVLGFGRTGMTLARTLKALG-ANVTVG-AR--KSAHLAR---ITE-MG--------------L----S---PFHLSE 203 (296)
T ss_pred CEEEEECCcHHHHHHHHHHHHCC-CEEEEE-EC--CHHHHHH---HHH-cC--------------C----e---eecHHH
Confidence 58999999999999999999876 555444 44 2211111 011 10 0 0 000001
Q ss_pred CCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCCCC
Q 022491 87 PEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSK 131 (296)
Q Consensus 87 ~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~~~ 131 (296)
..+. ..+.|+||.|+|.....+..-..++.|. +++|..+.
T Consensus 204 l~~~---l~~aDiVI~t~p~~~i~~~~l~~~~~g~--vIIDla~~ 243 (296)
T PRK08306 204 LAEE---VGKIDIIFNTIPALVLTKEVLSKMPPEA--LIIDLASK 243 (296)
T ss_pred HHHH---hCCCCEEEECCChhhhhHHHHHcCCCCc--EEEEEccC
Confidence 1121 2578999999997543332223345676 88887654
No 105
>KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms]
Probab=95.80 E-value=0.067 Score=49.33 Aligned_cols=36 Identities=28% Similarity=0.374 Sum_probs=27.9
Q ss_pred CCCCCeeEEEEEec-CHHHHHHHHHHHcCCCcEEEEE
Q 022491 1 MAGDKKIKIGINGF-GRIGRLVARVALQRDDVELVAV 36 (296)
Q Consensus 1 m~~~m~i~vgI~G~-G~iG~~l~r~l~~~p~~elv~i 36 (296)
|...++.+|-|-|+ |+||..+++.|+.+.+-=...|
T Consensus 1 m~~~~~~~VcVTGAsGfIgswivk~LL~rGY~V~gtV 37 (327)
T KOG1502|consen 1 MDQDEGKKVCVTGASGFIGSWIVKLLLSRGYTVRGTV 37 (327)
T ss_pred CCCCCCcEEEEeCCchHHHHHHHHHHHhCCCEEEEEE
Confidence 44444578999999 9999999999999986533333
No 106
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=95.80 E-value=0.038 Score=47.73 Aligned_cols=92 Identities=22% Similarity=0.164 Sum_probs=54.6
Q ss_pred eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEecCC
Q 022491 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRN 86 (296)
Q Consensus 7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~~d 86 (296)
++++|+|+|.+|..|.+.+..-. .|++..+.+ .++..+... +...+ . +.-. ..
T Consensus 2 ~~~~i~GtGniG~alA~~~a~ag-~eV~igs~r--~~~~~~a~a--~~l~~--------------~------i~~~--~~ 54 (211)
T COG2085 2 MIIAIIGTGNIGSALALRLAKAG-HEVIIGSSR--GPKALAAAA--AALGP--------------L------ITGG--SN 54 (211)
T ss_pred cEEEEeccChHHHHHHHHHHhCC-CeEEEecCC--ChhHHHHHH--Hhhcc--------------c------cccC--Ch
Confidence 68999999999999999988754 555555443 332111111 00000 0 0001 01
Q ss_pred CCCCCcccCCCcEEEEccCCccCHHHHHHHHH-CCCCeEEeeCCC
Q 022491 87 PEEIPWAKTGAEYVVESTGVFTDKDKAAAHLK-GGAKKVVISAPS 130 (296)
Q Consensus 87 ~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~-~G~k~vvid~~~ 130 (296)
.+. ....|+||.+.|-.......+.+.+ -| .|+|||..-
T Consensus 55 ~dA----~~~aDVVvLAVP~~a~~~v~~~l~~~~~-~KIvID~tn 94 (211)
T COG2085 55 EDA----AALADVVVLAVPFEAIPDVLAELRDALG-GKIVIDATN 94 (211)
T ss_pred HHH----HhcCCEEEEeccHHHHHhHHHHHHHHhC-CeEEEecCC
Confidence 122 2468999999998877777776654 23 348998653
No 107
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=95.76 E-value=0.019 Score=52.91 Aligned_cols=93 Identities=16% Similarity=0.255 Sum_probs=53.0
Q ss_pred eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecCCCC-hhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEecC
Q 022491 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFIS-TDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFR 85 (296)
Q Consensus 7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~~~~-~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~~ 85 (296)
.||+|+|+|.+|+.+++.|..+. .+-+.+.++..+ ...++. .++ . . +....
T Consensus 179 ~~V~ViGaG~iG~~~a~~L~~~g-~~~V~v~~r~~~ra~~la~------~~g----~--------------~---~~~~~ 230 (311)
T cd05213 179 KKVLVIGAGEMGELAAKHLAAKG-VAEITIANRTYERAEELAK------ELG----G--------------N---AVPLD 230 (311)
T ss_pred CEEEEECcHHHHHHHHHHHHHcC-CCEEEEEeCCHHHHHHHHH------HcC----C--------------e---EEeHH
Confidence 68999999999999999998743 444555555221 111111 111 0 0 00000
Q ss_pred CCCCCCcccCCCcEEEEccCCccCHHHHHHHHHC--CCCeEEeeCCC
Q 022491 86 NPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKG--GAKKVVISAPS 130 (296)
Q Consensus 86 d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~--G~k~vvid~~~ 130 (296)
+..+. ..++|+||.|||.....+....+++. +.+++++|.+-
T Consensus 231 ~~~~~---l~~aDvVi~at~~~~~~~~~~~~~~~~~~~~~~viDlav 274 (311)
T cd05213 231 ELLEL---LNEADVVISATGAPHYAKIVERAMKKRSGKPRLIVDLAV 274 (311)
T ss_pred HHHHH---HhcCCEEEECCCCCchHHHHHHHHhhCCCCCeEEEEeCC
Confidence 11221 24689999999987764444444432 23458888764
No 108
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=95.74 E-value=0.028 Score=46.38 Aligned_cols=96 Identities=17% Similarity=0.218 Sum_probs=53.2
Q ss_pred EEEEEecCHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCC--C-CcCcceeeeCCceeEECCEEEEEEec
Q 022491 8 KIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHG--Q-WKHNELKVKDEKTLLFGEKPVAVFGF 84 (296)
Q Consensus 8 ~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~--~-~~~~~v~~~~~~~l~~~~~~i~~~~~ 84 (296)
||+|+|+|..|..++..|..+. .-|.+..+ +.+.+.. + ...+. . ++ + + .+.. .+.+.
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g--~~V~l~~~--~~~~~~~-i--~~~~~n~~~~~-~-~------~l~~---~i~~t-- 60 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNG--HEVTLWGR--DEEQIEE-I--NETRQNPKYLP-G-I------KLPE---NIKAT-- 60 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCT--EEEEEETS--CHHHHHH-H--HHHTSETTTST-T-S------BEET---TEEEE--
T ss_pred CEEEECcCHHHHHHHHHHHHcC--CEEEEEec--cHHHHHH-H--HHhCCCCCCCC-C-c------ccCc---ccccc--
Confidence 7999999999999999999876 33445554 3222211 1 11121 1 11 1 1 1111 12232
Q ss_pred CCCCCCCcccCCCcEEEEccCCccCHHHHHHHH---HCCCCeEEeeC
Q 022491 85 RNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHL---KGGAKKVVISA 128 (296)
Q Consensus 85 ~d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l---~~G~k~vvid~ 128 (296)
.|+++. ..+.|+++.|+|+...++.++++. +.+. .++..
T Consensus 61 ~dl~~a---~~~ad~IiiavPs~~~~~~~~~l~~~l~~~~--~ii~~ 102 (157)
T PF01210_consen 61 TDLEEA---LEDADIIIIAVPSQAHREVLEQLAPYLKKGQ--IIISA 102 (157)
T ss_dssp SSHHHH---HTT-SEEEE-S-GGGHHHHHHHHTTTSHTT---EEEET
T ss_pred cCHHHH---hCcccEEEecccHHHHHHHHHHHhhccCCCC--EEEEe
Confidence 255443 358999999999999888777653 3555 55544
No 109
>PRK08618 ornithine cyclodeaminase; Validated
Probab=95.74 E-value=0.022 Score=52.81 Aligned_cols=95 Identities=17% Similarity=0.173 Sum_probs=57.5
Q ss_pred eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEecCC
Q 022491 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRN 86 (296)
Q Consensus 7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~~d 86 (296)
.+++|+|+|.+|+..++.+.....++.+.|.++ +.+....+. +.....+. + .+..+ .+
T Consensus 128 ~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r--~~~~a~~~~--~~~~~~~~-----------~-----~~~~~--~~ 185 (325)
T PRK08618 128 KTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSR--TFEKAYAFA--QEIQSKFN-----------T-----EIYVV--NS 185 (325)
T ss_pred cEEEEECCcHHHHHHHHHHHhcCCccEEEEECC--CHHHHHHHH--HHHHHhcC-----------C-----cEEEe--CC
Confidence 589999999999999988876566888888887 332211111 00000000 1 11122 13
Q ss_pred CCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCCC
Q 022491 87 PEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPS 130 (296)
Q Consensus 87 ~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~~ 130 (296)
+++. ..++|+|+.|||.. +.... ..++.|+ .|+.-.+
T Consensus 186 ~~~~---~~~aDiVi~aT~s~-~p~i~-~~l~~G~--hV~~iGs 222 (325)
T PRK08618 186 ADEA---IEEADIIVTVTNAK-TPVFS-EKLKKGV--HINAVGS 222 (325)
T ss_pred HHHH---HhcCCEEEEccCCC-CcchH-HhcCCCc--EEEecCC
Confidence 3433 25799999999987 34445 6778888 5554443
No 110
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=95.72 E-value=0.011 Score=51.63 Aligned_cols=95 Identities=23% Similarity=0.234 Sum_probs=55.7
Q ss_pred EEEEec-CHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEecCCC
Q 022491 9 IGINGF-GRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNP 87 (296)
Q Consensus 9 vgI~G~-G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~~d~ 87 (296)
|.|.|+ |.+|+.+++.|.. +.+++.++.-. . ....+..+ .. .|..+ + .....|+
T Consensus 1 I~V~GatG~~G~~v~~~L~~-~~~~V~~l~R~-~-~~~~~~~l--~~-------------~g~~v------v-~~d~~~~ 55 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLS-AGFSVRALVRD-P-SSDRAQQL--QA-------------LGAEV------V-EADYDDP 55 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHH-TTGCEEEEESS-S-HHHHHHHH--HH-------------TTTEE------E-ES-TT-H
T ss_pred CEEECCccHHHHHHHHHHHh-CCCCcEEEEec-c-chhhhhhh--hc-------------ccceE------e-ecccCCH
Confidence 689999 9999999999998 66888888744 2 11111111 11 01001 0 0001122
Q ss_pred CCCCcccCCCcEEEEccCCc------cCHHHHHHHHHCCCCeEEeeC
Q 022491 88 EEIPWAKTGAEYVVESTGVF------TDKDKAAAHLKGGAKKVVISA 128 (296)
Q Consensus 88 ~~i~~~~~~~DvV~~at~~~------~~~~~~~~~l~~G~k~vvid~ 128 (296)
+.+.-...++|.||.+++.. .....+..+.++|+|++|.+.
T Consensus 56 ~~l~~al~g~d~v~~~~~~~~~~~~~~~~~li~Aa~~agVk~~v~ss 102 (233)
T PF05368_consen 56 ESLVAALKGVDAVFSVTPPSHPSELEQQKNLIDAAKAAGVKHFVPSS 102 (233)
T ss_dssp HHHHHHHTTCSEEEEESSCSCCCHHHHHHHHHHHHHHHT-SEEEESE
T ss_pred HHHHHHHcCCceEEeecCcchhhhhhhhhhHHHhhhccccceEEEEE
Confidence 22221136999999999954 223456677888999888754
No 111
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=95.70 E-value=0.03 Score=45.55 Aligned_cols=32 Identities=22% Similarity=0.196 Sum_probs=25.7
Q ss_pred eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP 39 (296)
Q Consensus 7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~ 39 (296)
.|++|+|+|.+|+.+++.|..+. .+.+.+.++
T Consensus 20 ~~i~iiG~G~~g~~~a~~l~~~g-~~~v~v~~r 51 (155)
T cd01065 20 KKVLILGAGGAARAVAYALAELG-AAKIVIVNR 51 (155)
T ss_pred CEEEEECCcHHHHHHHHHHHHCC-CCEEEEEcC
Confidence 68999999999999999998875 444555555
No 112
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=95.62 E-value=0.023 Score=53.76 Aligned_cols=77 Identities=19% Similarity=0.237 Sum_probs=50.5
Q ss_pred eeEEEEEe-cCHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEec
Q 022491 6 KIKIGING-FGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGF 84 (296)
Q Consensus 6 ~i~vgI~G-~G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~ 84 (296)
+.||+|+| +|.+|+.+.+.|.... .++..+ ++ .+. +
T Consensus 98 ~~~I~IiGG~GlmG~slA~~l~~~G-~~V~~~-d~-~~~---------~------------------------------- 134 (374)
T PRK11199 98 LRPVVIVGGKGQLGRLFAKMLTLSG-YQVRIL-EQ-DDW---------D------------------------------- 134 (374)
T ss_pred cceEEEEcCCChhhHHHHHHHHHCC-CeEEEe-CC-Ccc---------h-------------------------------
Confidence 37899999 6999999999998764 333222 22 000 0
Q ss_pred CCCCCCCcccCCCcEEEEccCCccCHHHHHHHHH--CCCCeEEeeCCCC
Q 022491 85 RNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLK--GGAKKVVISAPSK 131 (296)
Q Consensus 85 ~d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~--~G~k~vvid~~~~ 131 (296)
++++. ..++|+||+|+|.....+....+.. .|+ +|+|.+|-
T Consensus 135 -~~~~~---~~~aDlVilavP~~~~~~~~~~l~~l~~~~--iv~Dv~Sv 177 (374)
T PRK11199 135 -RAEDI---LADAGMVIVSVPIHLTEEVIARLPPLPEDC--ILVDLTSV 177 (374)
T ss_pred -hHHHH---HhcCCEEEEeCcHHHHHHHHHHHhCCCCCc--EEEECCCc
Confidence 11111 2478999999999877766665433 345 88998773
No 113
>PRK06545 prephenate dehydrogenase; Validated
Probab=95.60 E-value=0.04 Score=51.75 Aligned_cols=91 Identities=20% Similarity=0.204 Sum_probs=51.9
Q ss_pred EEEEEecCHHHHHHHHHHHcCC-CcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEecCC
Q 022491 8 KIGINGFGRIGRLVARVALQRD-DVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRN 86 (296)
Q Consensus 8 ~vgI~G~G~iG~~l~r~l~~~p-~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~~d 86 (296)
||+|+|+|.||..+++.|.+.. ++.+... + .+...... ....+ +. . ... .+
T Consensus 2 ~I~iIG~GliG~siA~~L~~~G~~v~i~~~-~--~~~~~~~~----a~~~~--------------~~--~---~~~--~~ 53 (359)
T PRK06545 2 TVLIVGLGLIGGSLALAIKAAGPDVFIIGY-D--PSAAQLAR----ALGFG--------------VI--D---ELA--AD 53 (359)
T ss_pred eEEEEEeCHHHHHHHHHHHhcCCCeEEEEe-C--CCHHHHHH----HhcCC--------------CC--c---ccc--cC
Confidence 6999999999999999998754 4444332 2 22221111 00000 00 0 000 12
Q ss_pred CCCCCcccCCCcEEEEccCCccCHHHHHHHHH----CCCCeEEeeCCCC
Q 022491 87 PEEIPWAKTGAEYVVESTGVFTDKDKAAAHLK----GGAKKVVISAPSK 131 (296)
Q Consensus 87 ~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~----~G~k~vvid~~~~ 131 (296)
.++. ..++|+||.|+|.....+.+.++.. .++ +|.|.++-
T Consensus 54 ~~~~---~~~aDlVilavP~~~~~~vl~~l~~~~l~~~~--ivtDv~Sv 97 (359)
T PRK06545 54 LQRA---AAEADLIVLAVPVDATAALLAELADLELKPGV--IVTDVGSV 97 (359)
T ss_pred HHHH---hcCCCEEEEeCCHHHHHHHHHHHhhcCCCCCc--EEEeCccc
Confidence 2222 2578999999999876666666543 344 77776653
No 114
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=95.55 E-value=0.017 Score=46.40 Aligned_cols=95 Identities=17% Similarity=0.180 Sum_probs=52.6
Q ss_pred eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEecCC
Q 022491 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRN 86 (296)
Q Consensus 7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~~d 86 (296)
.|+.|+|+|-+|+.++..|..+. ++-+.|..+ +.+....+. +.++ + ..+....-.+
T Consensus 13 ~~vlviGaGg~ar~v~~~L~~~g-~~~i~i~nR--t~~ra~~l~---~~~~----~--------------~~~~~~~~~~ 68 (135)
T PF01488_consen 13 KRVLVIGAGGAARAVAAALAALG-AKEITIVNR--TPERAEALA---EEFG----G--------------VNIEAIPLED 68 (135)
T ss_dssp SEEEEESSSHHHHHHHHHHHHTT-SSEEEEEES--SHHHHHHHH---HHHT----G--------------CSEEEEEGGG
T ss_pred CEEEEECCHHHHHHHHHHHHHcC-CCEEEEEEC--CHHHHHHHH---HHcC----c--------------cccceeeHHH
Confidence 68999999999999999999884 554445445 332211111 1111 0 0011221112
Q ss_pred CCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCC--eEEeeCC
Q 022491 87 PEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAK--KVVISAP 129 (296)
Q Consensus 87 ~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k--~vvid~~ 129 (296)
..+. ..++|+||.|||.... ...+..++...+ ++++|.+
T Consensus 69 ~~~~---~~~~DivI~aT~~~~~-~i~~~~~~~~~~~~~~v~Dla 109 (135)
T PF01488_consen 69 LEEA---LQEADIVINATPSGMP-IITEEMLKKASKKLRLVIDLA 109 (135)
T ss_dssp HCHH---HHTESEEEE-SSTTST-SSTHHHHTTTCHHCSEEEES-
T ss_pred HHHH---HhhCCeEEEecCCCCc-ccCHHHHHHHHhhhhceeccc
Confidence 2211 3579999999998755 333445555432 3889874
No 115
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=95.54 E-value=0.077 Score=49.20 Aligned_cols=31 Identities=16% Similarity=0.249 Sum_probs=25.0
Q ss_pred CeeEEEEEecCHHHHHHHHHHHcCCCcEEEEE
Q 022491 5 KKIKIGINGFGRIGRLVARVALQRDDVELVAV 36 (296)
Q Consensus 5 m~i~vgI~G~G~iG~~l~r~l~~~p~~elv~i 36 (296)
||+||+|+|+|.+|..++..|..+. .++..+
T Consensus 1 ~~mkI~IiG~G~mG~~~A~~L~~~G-~~V~~~ 31 (341)
T PRK08229 1 MMARICVLGAGSIGCYLGGRLAAAG-ADVTLI 31 (341)
T ss_pred CCceEEEECCCHHHHHHHHHHHhcC-CcEEEE
Confidence 4579999999999999999998764 444444
No 116
>PLN02696 1-deoxy-D-xylulose-5-phosphate reductoisomerase
Probab=95.46 E-value=0.045 Score=52.56 Aligned_cols=111 Identities=15% Similarity=0.180 Sum_probs=63.8
Q ss_pred eEEEEEec-CHHHHHHHHHHHcCCC-cEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCc---eeE--ECCE--
Q 022491 7 IKIGINGF-GRIGRLVARVALQRDD-VELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEK---TLL--FGEK-- 77 (296)
Q Consensus 7 i~vgI~G~-G~iG~~l~r~l~~~p~-~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~---~l~--~~~~-- 77 (296)
.||+|+|+ |-||...++.+.+||+ ++++++... .+.+.++... ..-.|++- ...+.. .+. ..+.
T Consensus 58 KkI~ILGSTGSIGtqtLdVI~~~pd~f~vvaLaag-~Ni~lL~~q~--~~f~p~~v----~v~d~~~~~~l~~~l~~~~~ 130 (454)
T PLN02696 58 KPISLLGSTGSIGTQTLDIVAENPDKFKVVALAAG-SNVTLLADQV--RKFKPKLV----AVRNESLVDELKEALADLDD 130 (454)
T ss_pred cEEEEecCCcHhhHHHHHHHHhCccccEEEEEECC-CCHHHHHHHH--HHhCCCEE----EEcCHHHHHHHHHhhcCCCC
Confidence 79999999 9999999999999986 999999876 5654333311 11112111 110000 000 0000
Q ss_pred EEEEEe-cCCCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEe
Q 022491 78 PVAVFG-FRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVI 126 (296)
Q Consensus 78 ~i~~~~-~~d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvi 126 (296)
.+.++. ..+..++ -...++|+|+.+...+.-..-.-.++++|. ++.+
T Consensus 131 ~~~vl~G~egl~~l-a~~~evDiVV~AIvG~aGL~pTl~AIkaGK-~VAL 178 (454)
T PLN02696 131 KPEIIPGEEGIVEV-ARHPEAVTVVTGIVGCAGLKPTVAAIEAGK-DIAL 178 (454)
T ss_pred CcEEEECHHHHHHH-HcCCCCCEEEEeCccccchHHHHHHHHCCC-cEEE
Confidence 112222 1112222 112478999999988766666677889995 3444
No 117
>PLN02712 arogenate dehydrogenase
Probab=95.45 E-value=0.033 Score=56.56 Aligned_cols=90 Identities=18% Similarity=0.317 Sum_probs=54.2
Q ss_pred eeEEEEEecCHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEecC
Q 022491 6 KIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFR 85 (296)
Q Consensus 6 ~i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~~ 85 (296)
++||||+|+|.+|+.+++.|.+.. .+|++. ++....+ .+. . + | + ..+ .
T Consensus 369 ~~kIgIIGlG~mG~slA~~L~~~G-~~V~~~-dr~~~~~-~a~-----~-~------------G--v-------~~~--~ 416 (667)
T PLN02712 369 KLKIAIVGFGNFGQFLAKTMVKQG-HTVLAY-SRSDYSD-EAQ-----K-L------------G--V-------SYF--S 416 (667)
T ss_pred CCEEEEEecCHHHHHHHHHHHHCc-CEEEEE-ECChHHH-HHH-----H-c------------C--C-------eEe--C
Confidence 479999999999999999998754 576655 4411111 000 0 0 0 0 011 1
Q ss_pred CCCCCCcccCCCcEEEEccCCccCHHHHHHHH----HCCCCeEEeeCCCC
Q 022491 86 NPEEIPWAKTGAEYVVESTGVFTDKDKAAAHL----KGGAKKVVISAPSK 131 (296)
Q Consensus 86 d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l----~~G~k~vvid~~~~ 131 (296)
+.+++. ...+|+||.|+|.....+.+..+. +.|+ +++|.++-
T Consensus 417 ~~~el~--~~~aDvVILavP~~~~~~vi~~l~~~~lk~g~--ivvDv~Sv 462 (667)
T PLN02712 417 DADDLC--EEHPEVILLCTSILSTEKVLKSLPFQRLKRST--LFVDVLSV 462 (667)
T ss_pred CHHHHH--hcCCCEEEECCChHHHHHHHHHHHHhcCCCCc--EEEECCCc
Confidence 233321 125799999999876666665543 2455 88887653
No 118
>PRK07680 late competence protein ComER; Validated
Probab=95.44 E-value=0.03 Score=50.45 Aligned_cols=91 Identities=12% Similarity=0.146 Sum_probs=52.8
Q ss_pred EEEEEecCHHHHHHHHHHHcCCC--cEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEecC
Q 022491 8 KIGINGFGRIGRLVARVALQRDD--VELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFR 85 (296)
Q Consensus 8 ~vgI~G~G~iG~~l~r~l~~~p~--~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~~ 85 (296)
||+|+|+|.+|..+++.|.+... .+-+.+.++ +.+....+ ...+ . + +.+..
T Consensus 2 ~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r--~~~~~~~~---~~~~---~--------g---------~~~~~-- 54 (273)
T PRK07680 2 NIGFIGTGNMGTILIEAFLESGAVKPSQLTITNR--TPAKAYHI---KERY---P--------G---------IHVAK-- 54 (273)
T ss_pred EEEEECccHHHHHHHHHHHHCCCCCcceEEEECC--CHHHHHHH---HHHc---C--------C---------eEEEC--
Confidence 69999999999999999887653 233455555 33221111 1101 0 0 11111
Q ss_pred CCCCCCcccCCCcEEEEccCCccCHHHHHHHH---HCCCCeEEeeCCC
Q 022491 86 NPEEIPWAKTGAEYVVESTGVFTDKDKAAAHL---KGGAKKVVISAPS 130 (296)
Q Consensus 86 d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l---~~G~k~vvid~~~ 130 (296)
++.+. ..+.|+||.|++.....+.++.+. ..+. .|+|..+
T Consensus 55 ~~~~~---~~~aDiVilav~p~~~~~vl~~l~~~l~~~~--~iis~~a 97 (273)
T PRK07680 55 TIEEV---ISQSDLIFICVKPLDIYPLLQKLAPHLTDEH--CLVSITS 97 (273)
T ss_pred CHHHH---HHhCCEEEEecCHHHHHHHHHHHHhhcCCCC--EEEEECC
Confidence 23332 247899999998876666655543 3343 7777654
No 119
>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional
Probab=95.44 E-value=0.057 Score=56.23 Aligned_cols=102 Identities=16% Similarity=0.242 Sum_probs=57.4
Q ss_pred CeeEEEEEecCHHHHHHHHHHHcCC--------CcEEEEEecCCCChhhhhhccccccc-CCCCcCcceeeeCCceeEEC
Q 022491 5 KKIKIGINGFGRIGRLVARVALQRD--------DVELVAVNDPFISTDYMTYMFKYDSV-HGQWKHNELKVKDEKTLLFG 75 (296)
Q Consensus 5 m~i~vgI~G~G~iG~~l~r~l~~~p--------~~elv~i~~~~~~~~~~a~~l~~~s~-~~~~~~~~v~~~~~~~l~~~ 75 (296)
+.++|+|+|+|.+|+.++++|.++. ++++++|.+.... ++...-. ...|. ... .. .
T Consensus 464 ~~~~i~l~G~G~VG~~~~~~l~~~~~~l~~~~~~l~v~~i~~s~~~------~~~~~g~~~~~~~-~~~---~~--~--- 528 (819)
T PRK09436 464 QVLDVFVIGVGGVGGALLEQIKRQQPWLKKKNIDLRVCGIANSRKM------LLDEHGIDLDNWR-EEL---AE--A--- 528 (819)
T ss_pred ccccEEEEecCHHHHHHHHHHHHHHHHHHhcCCcEEEEEEEcCCcc------ccCCCCCCHHHHH-HHH---hh--c---
Confidence 4589999999999999999987542 5788888764111 1100000 00111 000 00 0
Q ss_pred CEEEEEEecCCCCC-CCcc---cCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCC
Q 022491 76 EKPVAVFGFRNPEE-IPWA---KTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAP 129 (296)
Q Consensus 76 ~~~i~~~~~~d~~~-i~~~---~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~ 129 (296)
....+.+. +++. ....|+|||||+.........+++++|+ -||++.
T Consensus 529 ------~~~~~~~~~~~~~~~~~~~~~vvvd~t~~~~~~~~~~~al~~g~--~VVtaN 578 (819)
T PRK09436 529 ------GEPFDLDRLIRLVKEYHLLNPVIVDCTSSQAVADQYADFLAAGF--HVVTPN 578 (819)
T ss_pred ------cCCCCHHHHHHHHhhcCCCCCEEEECCCChHHHHHHHHHHHcCC--EEEcCC
Confidence 00000000 0000 1146899999998666666778999998 677654
No 120
>PLN02712 arogenate dehydrogenase
Probab=95.42 E-value=0.032 Score=56.69 Aligned_cols=89 Identities=17% Similarity=0.325 Sum_probs=54.1
Q ss_pred eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEecCC
Q 022491 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRN 86 (296)
Q Consensus 7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~~d 86 (296)
+||||+|+|.+|+.+++.|.++. .+|+++ ++ .+....+. . + | + ..+ .+
T Consensus 53 ~kIgIIG~G~mG~slA~~L~~~G-~~V~~~-dr-~~~~~~A~-----~-~------------G--v-------~~~--~d 100 (667)
T PLN02712 53 LKIAIIGFGNYGQFLAKTLISQG-HTVLAH-SR-SDHSLAAR-----S-L------------G--V-------SFF--LD 100 (667)
T ss_pred CEEEEEccCHHHHHHHHHHHHCC-CEEEEE-eC-CHHHHHHH-----H-c------------C--C-------EEe--CC
Confidence 68999999999999999998874 677665 33 12211110 0 0 0 1 011 13
Q ss_pred CCCCCcccCCCcEEEEccCCccCHHHHHHHH----HCCCCeEEeeCCCC
Q 022491 87 PEEIPWAKTGAEYVVESTGVFTDKDKAAAHL----KGGAKKVVISAPSK 131 (296)
Q Consensus 87 ~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l----~~G~k~vvid~~~~ 131 (296)
++++- ..++|+||.|+|.....+.++.+. +.|+ +|+|..+-
T Consensus 101 ~~e~~--~~~aDvViLavP~~~~~~vl~~l~~~~l~~g~--iVvDv~Sv 145 (667)
T PLN02712 101 PHDLC--ERHPDVILLCTSIISTENVLKSLPLQRLKRNT--LFVDVLSV 145 (667)
T ss_pred HHHHh--hcCCCEEEEcCCHHHHHHHHHhhhhhcCCCCe--EEEECCCC
Confidence 33321 135899999999876666555442 3455 88887653
No 121
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=95.38 E-value=0.077 Score=46.32 Aligned_cols=32 Identities=25% Similarity=0.574 Sum_probs=29.4
Q ss_pred eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP 39 (296)
Q Consensus 7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~ 39 (296)
+||+|.|||.+|+.+++.|.+. ...+|+|+|.
T Consensus 24 ~~vaIqGfGnVG~~~a~~L~~~-G~~vV~vsD~ 55 (217)
T cd05211 24 LTVAVQGLGNVGWGLAKKLAEE-GGKVLAVSDP 55 (217)
T ss_pred CEEEEECCCHHHHHHHHHHHHc-CCEEEEEEcC
Confidence 7999999999999999999987 4889999986
No 122
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=95.26 E-value=0.052 Score=49.05 Aligned_cols=136 Identities=13% Similarity=0.129 Sum_probs=70.1
Q ss_pred eEEEEEecCHHHHHHHHHHHcCC--C-cEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEe
Q 022491 7 IKIGINGFGRIGRLVARVALQRD--D-VELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFG 83 (296)
Q Consensus 7 i~vgI~G~G~iG~~l~r~l~~~p--~-~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~ 83 (296)
+||+|+|+|.+|..+++.|.++. . .++ .+.++ ...+.. ..+ ...++ . ....
T Consensus 4 mkI~~IG~G~mG~aia~~l~~~g~~~~~~v-~v~~r-~~~~~~-~~l--~~~~g--------------~-------~~~~ 57 (279)
T PRK07679 4 QNISFLGAGSIAEAIIGGLLHANVVKGEQI-TVSNR-SNETRL-QEL--HQKYG--------------V-------KGTH 57 (279)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCcceE-EEECC-CCHHHH-HHH--HHhcC--------------c-------eEeC
Confidence 48999999999999999998764 1 333 34444 121111 111 00000 0 0111
Q ss_pred cCCCCCCCcccCCCcEEEEccCCccCHHHHHHHHHC-CCCeEEeeC-CCC---------C-CCeEEcccC--hhccCCCC
Q 022491 84 FRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKG-GAKKVVISA-PSK---------D-APMFVVGVN--EKEYKPEL 149 (296)
Q Consensus 84 ~~d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~-G~k~vvid~-~~~---------d-~~~~v~gvn--~~~l~~~~ 149 (296)
++.+. ..++|+||.|++.....+.+..+... ...+++||. ++- . ...++.++| ......+.
T Consensus 58 --~~~e~---~~~aDvVilav~p~~~~~vl~~l~~~~~~~~liIs~~aGi~~~~l~~~~~~~~~v~r~mPn~~~~~~~~~ 132 (279)
T PRK07679 58 --NKKEL---LTDANILFLAMKPKDVAEALIPFKEYIHNNQLIISLLAGVSTHSIRNLLQKDVPIIRAMPNTSAAILKSA 132 (279)
T ss_pred --CHHHH---HhcCCEEEEEeCHHHHHHHHHHHHhhcCCCCEEEEECCCCCHHHHHHHcCCCCeEEEECCCHHHHHhccc
Confidence 23332 24789999999998777766655431 112378885 321 1 123555554 22222233
Q ss_pred CeE-EcCCcchhhhHhHHHHHHhhcC
Q 022491 150 DIV-SNASCTTNCLAPLAKVIHDKFG 174 (296)
Q Consensus 150 ~iI-s~p~C~~tal~~~l~~L~~~~g 174 (296)
.++ .+..|.... .-.+.+|.+.+|
T Consensus 133 t~~~~~~~~~~~~-~~~v~~l~~~~G 157 (279)
T PRK07679 133 TAISPSKHATAEH-IQTAKALFETIG 157 (279)
T ss_pred EEEeeCCCCCHHH-HHHHHHHHHhCC
Confidence 344 333332222 335566666666
No 123
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=95.25 E-value=0.04 Score=49.34 Aligned_cols=23 Identities=26% Similarity=0.557 Sum_probs=20.7
Q ss_pred eEEEEEecCHHHHHHHHHHHcCC
Q 022491 7 IKIGINGFGRIGRLVARVALQRD 29 (296)
Q Consensus 7 i~vgI~G~G~iG~~l~r~l~~~p 29 (296)
+||+|+|+|.+|..+++.|.+..
T Consensus 4 mkI~iIG~G~mG~ai~~~l~~~~ 26 (260)
T PTZ00431 4 IRVGFIGLGKMGSALAYGIENSN 26 (260)
T ss_pred CEEEEECccHHHHHHHHHHHhCC
Confidence 47999999999999999998764
No 124
>PRK06046 alanine dehydrogenase; Validated
Probab=95.24 E-value=0.04 Score=51.12 Aligned_cols=34 Identities=29% Similarity=0.231 Sum_probs=31.2
Q ss_pred eeEEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491 6 KIKIGINGFGRIGRLVARVALQRDDVELVAVNDP 39 (296)
Q Consensus 6 ~i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~ 39 (296)
..++||+|+|..|+.+++.+...+.++.+.|.++
T Consensus 129 ~~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r 162 (326)
T PRK06046 129 SKVVGIIGAGNQARTQLLALSEVFDLEEVRVYDR 162 (326)
T ss_pred CCEEEEECCcHHHHHHHHHHHhhCCceEEEEECC
Confidence 3689999999999999999988888999999987
No 125
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=95.20 E-value=0.046 Score=50.59 Aligned_cols=33 Identities=21% Similarity=0.324 Sum_probs=25.7
Q ss_pred CCCCCeeEEEEEecCHHHHHHHHHHHcCCCcEEEEE
Q 022491 1 MAGDKKIKIGINGFGRIGRLVARVALQRDDVELVAV 36 (296)
Q Consensus 1 m~~~m~i~vgI~G~G~iG~~l~r~l~~~p~~elv~i 36 (296)
|+.. +||+|+|+|.+|..++..|.... .++..+
T Consensus 1 ~~~~--m~I~iIG~G~mG~~ia~~L~~~G-~~V~~~ 33 (328)
T PRK14618 1 MHHG--MRVAVLGAGAWGTALAVLAASKG-VPVRLW 33 (328)
T ss_pred CCCC--CeEEEECcCHHHHHHHHHHHHCC-CeEEEE
Confidence 7765 58999999999999999998764 444433
No 126
>PRK08605 D-lactate dehydrogenase; Validated
Probab=95.19 E-value=0.043 Score=51.02 Aligned_cols=30 Identities=33% Similarity=0.522 Sum_probs=23.5
Q ss_pred eEEEEEecCHHHHHHHHHHHcCCCcEEEEE
Q 022491 7 IKIGINGFGRIGRLVARVALQRDDVELVAV 36 (296)
Q Consensus 7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i 36 (296)
++|||+|+|.||+.+++.|...-.+++.+.
T Consensus 147 ~~VgIIG~G~IG~~vA~~L~~~~g~~V~~~ 176 (332)
T PRK08605 147 LKVAVIGTGRIGLAVAKIFAKGYGSDVVAY 176 (332)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCEEEEE
Confidence 589999999999999999843224676554
No 127
>COG3804 Uncharacterized conserved protein related to dihydrodipicolinate reductase [Function unknown]
Probab=95.18 E-value=0.1 Score=46.85 Aligned_cols=35 Identities=23% Similarity=0.304 Sum_probs=32.2
Q ss_pred CeeEEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491 5 KKIKIGINGFGRIGRLVARVALQRDDVELVAVNDP 39 (296)
Q Consensus 5 m~i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~ 39 (296)
|.++|-|.|.|++|.+.+|.+..+|++|+|+.-..
T Consensus 1 m~~~vvqyGtG~vGv~air~l~akpe~elvgawv~ 35 (350)
T COG3804 1 MSLRVVQYGTGSVGVAAIRGLLAKPELELVGAWVH 35 (350)
T ss_pred CCceeEEeccchHHHHHHHHHHcCCCCceEEEEec
Confidence 44789999999999999999999999999998876
No 128
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=95.18 E-value=0.035 Score=50.19 Aligned_cols=91 Identities=16% Similarity=0.162 Sum_probs=52.1
Q ss_pred eEEEEEecCHHHHHHHHHHHcCCC---cEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEe
Q 022491 7 IKIGINGFGRIGRLVARVALQRDD---VELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFG 83 (296)
Q Consensus 7 i~vgI~G~G~iG~~l~r~l~~~p~---~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~ 83 (296)
+||+|+|+|.+|..+++.|.+... .++..++.+ ..... ..+ ...+ . + +.+..
T Consensus 2 ~~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r~--~~~~~-~~l--~~~~---~---------------~--~~~~~ 56 (277)
T PRK06928 2 EKIGFIGYGSMADMIATKLLETEVATPEEIILYSSS--KNEHF-NQL--YDKY---P---------------T--VELAD 56 (277)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCcccEEEEeCC--cHHHH-HHH--HHHc---C---------------C--eEEeC
Confidence 589999999999999999887542 455555432 21110 101 0100 0 0 00111
Q ss_pred cCCCCCCCcccCCCcEEEEccCCccCHHHHHHHH---HCCCCeEEeeCC
Q 022491 84 FRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHL---KGGAKKVVISAP 129 (296)
Q Consensus 84 ~~d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l---~~G~k~vvid~~ 129 (296)
+..+. ..+.|+||.|+|.....+.+.++. ..+. .+|+..
T Consensus 57 --~~~e~---~~~aDvVilavpp~~~~~vl~~l~~~l~~~~--~ivS~~ 98 (277)
T PRK06928 57 --NEAEI---FTKCDHSFICVPPLAVLPLLKDCAPVLTPDR--HVVSIA 98 (277)
T ss_pred --CHHHH---HhhCCEEEEecCHHHHHHHHHHHHhhcCCCC--EEEEEC
Confidence 22222 247899999999887777666553 3454 677654
No 129
>PLN02688 pyrroline-5-carboxylate reductase
Probab=95.15 E-value=0.068 Score=47.75 Aligned_cols=33 Identities=18% Similarity=0.414 Sum_probs=24.5
Q ss_pred eEEEEEecCHHHHHHHHHHHcCCC---cEEEEEecC
Q 022491 7 IKIGINGFGRIGRLVARVALQRDD---VELVAVNDP 39 (296)
Q Consensus 7 i~vgI~G~G~iG~~l~r~l~~~p~---~elv~i~~~ 39 (296)
+|||++|+|.+|..+++.|.+... .++...+++
T Consensus 1 ~kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~~~r 36 (266)
T PLN02688 1 FRVGFIGAGKMAEAIARGLVASGVVPPSRISTADDS 36 (266)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCCcceEEEEeCC
Confidence 479999999999999999887542 254444254
No 130
>PRK09414 glutamate dehydrogenase; Provisional
Probab=95.12 E-value=0.14 Score=49.35 Aligned_cols=102 Identities=15% Similarity=0.211 Sum_probs=57.9
Q ss_pred eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecCCCCh---h--hhhhcccccccC-CCCcCcceeeeCCceeEECCEEEE
Q 022491 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFIST---D--YMTYMFKYDSVH-GQWKHNELKVKDEKTLLFGEKPVA 80 (296)
Q Consensus 7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~~~~~---~--~~a~~l~~~s~~-~~~~~~~v~~~~~~~l~~~~~~i~ 80 (296)
.||+|.|||.+|+.+++.|.+.. ++|++|+|.+... + +...++++.... +.+. +. ... . + ..
T Consensus 233 ~rVaIqGfGnVG~~~A~~L~~~G-akVVavsDs~G~iyn~~GLD~~~L~~~k~~~~~~l~-~~---~~~--~---~--~~ 300 (445)
T PRK09414 233 KRVVVSGSGNVAIYAIEKAQQLG-AKVVTCSDSSGYVYDEEGIDLEKLKEIKEVRRGRIS-EY---AEE--F---G--AE 300 (445)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC-CEEEEEEcCCceEECCCCCCHHHHHHHHHhcCCchh-hh---hhh--c---C--Ce
Confidence 79999999999999999998764 9999998842211 0 000111111110 1111 00 000 0 0 00
Q ss_pred EEecCCCCCCCcccCCCcEEEEccCC-ccCHHHHHHHHHCCCCeEEe
Q 022491 81 VFGFRNPEEIPWAKTGAEYVVESTGV-FTDKDKAAAHLKGGAKKVVI 126 (296)
Q Consensus 81 ~~~~~d~~~i~~~~~~~DvV~~at~~-~~~~~~~~~~l~~G~k~vvi 126 (296)
. .+.+++ | ..++||++.|+.. ..+.+.+..+.+.+|| +|+
T Consensus 301 ~---i~~~~i-~-~~d~DVliPaAl~n~It~~~a~~i~~~~ak-iIv 341 (445)
T PRK09414 301 Y---LEGGSP-W-SVPCDIALPCATQNELDEEDAKTLIANGVK-AVA 341 (445)
T ss_pred e---cCCccc-c-ccCCcEEEecCCcCcCCHHHHHHHHHcCCe-EEE
Confidence 1 134454 5 3689999999875 4455667777766785 444
No 131
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=95.03 E-value=0.053 Score=49.72 Aligned_cols=31 Identities=23% Similarity=0.316 Sum_probs=24.0
Q ss_pred eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP 39 (296)
Q Consensus 7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~ 39 (296)
+||+|+|+|.+|..+.+.|.+.. .++ .+.++
T Consensus 2 mkI~iiG~G~mG~~~a~~L~~~g-~~V-~~~~r 32 (325)
T PRK00094 2 MKIAVLGAGSWGTALAIVLARNG-HDV-TLWAR 32 (325)
T ss_pred CEEEEECCCHHHHHHHHHHHhCC-CEE-EEEEC
Confidence 58999999999999999998754 444 33344
No 132
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=94.94 E-value=0.09 Score=41.16 Aligned_cols=82 Identities=20% Similarity=0.192 Sum_probs=52.8
Q ss_pred EEEEEec----CHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEe
Q 022491 8 KIGINGF----GRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFG 83 (296)
Q Consensus 8 ~vgI~G~----G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~ 83 (296)
+|+|+|+ +..|..+++.|.++. .++..||-. . ++.. | ++.+.
T Consensus 2 siAVvGaS~~~~~~g~~v~~~l~~~G-~~v~~Vnp~-~-----------~~i~-------------------G--~~~y~ 47 (116)
T PF13380_consen 2 SIAVVGASDNPGKFGYRVLRNLKAAG-YEVYPVNPK-G-----------GEIL-------------------G--IKCYP 47 (116)
T ss_dssp EEEEET--SSTTSHHHHHHHHHHHTT--EEEEESTT-C-----------SEET-------------------T--EE-BS
T ss_pred EEEEEcccCCCCChHHHHHHHHHhCC-CEEEEECCC-c-----------eEEC-------------------c--EEeec
Confidence 6899995 778999999999854 788888644 1 1110 1 01221
Q ss_pred cCCCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeC
Q 022491 84 FRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISA 128 (296)
Q Consensus 84 ~~d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~ 128 (296)
+.++++ ..+|+++.|+|.....+.++++.+.|++.+++-.
T Consensus 48 --sl~e~p---~~iDlavv~~~~~~~~~~v~~~~~~g~~~v~~~~ 87 (116)
T PF13380_consen 48 --SLAEIP---EPIDLAVVCVPPDKVPEIVDEAAALGVKAVWLQP 87 (116)
T ss_dssp --SGGGCS---ST-SEEEE-S-HHHHHHHHHHHHHHT-SEEEE-T
T ss_pred --cccCCC---CCCCEEEEEcCHHHHHHHHHHHHHcCCCEEEEEc
Confidence 222222 4789999999999999999999999999887743
No 133
>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional
Probab=94.90 E-value=0.085 Score=54.78 Aligned_cols=35 Identities=29% Similarity=0.375 Sum_probs=29.4
Q ss_pred CeeEEEEEecCHHHHHHHHHHHcCC---------CcEEEEEecC
Q 022491 5 KKIKIGINGFGRIGRLVARVALQRD---------DVELVAVNDP 39 (296)
Q Consensus 5 m~i~vgI~G~G~iG~~l~r~l~~~p---------~~elv~i~~~ 39 (296)
++++|+|+|+|.+|+.++++|.++. ++++++|.+.
T Consensus 457 ~~i~i~l~G~G~VG~~l~~~l~~~~~~l~~~~g~~~~v~~I~~s 500 (810)
T PRK09466 457 KRIGLVLFGKGNIGSRWLELFAREQSTLSARTGFEFVLVGVVDS 500 (810)
T ss_pred ceEEEEEEecCCChHHHHHHHHHHHHHHHHhcCCCEEEEEEEeC
Confidence 4599999999999999999986532 5888999865
No 134
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=94.84 E-value=0.052 Score=49.82 Aligned_cols=26 Identities=27% Similarity=0.294 Sum_probs=22.0
Q ss_pred eEEEEEecCHHHHHHHHHHHcCCCcEE
Q 022491 7 IKIGINGFGRIGRLVARVALQRDDVEL 33 (296)
Q Consensus 7 i~vgI~G~G~iG~~l~r~l~~~p~~el 33 (296)
+||+|+|+|.+|..+.+.|.... .++
T Consensus 5 m~I~iiG~G~~G~~lA~~l~~~G-~~V 30 (308)
T PRK14619 5 KTIAILGAGAWGSTLAGLASANG-HRV 30 (308)
T ss_pred CEEEEECccHHHHHHHHHHHHCC-CEE
Confidence 68999999999999999998764 344
No 135
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=94.84 E-value=0.036 Score=44.95 Aligned_cols=33 Identities=24% Similarity=0.364 Sum_probs=26.9
Q ss_pred eEEEEEec-CHHHHHHHHHHHcCCCcEEEEEecC
Q 022491 7 IKIGINGF-GRIGRLVARVALQRDDVELVAVNDP 39 (296)
Q Consensus 7 i~vgI~G~-G~iG~~l~r~l~~~p~~elv~i~~~ 39 (296)
+||+|+|+ |.+|..++-.|...+-..-+.+.|.
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~ 34 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDI 34 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEES
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEecc
Confidence 48999999 9999999999988876554555565
No 136
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=94.73 E-value=0.067 Score=48.85 Aligned_cols=31 Identities=29% Similarity=0.420 Sum_probs=24.7
Q ss_pred eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP 39 (296)
Q Consensus 7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~ 39 (296)
.||+|+|.|.+|..+++.|.++. .++ .+.++
T Consensus 2 ~~Ig~IGlG~mG~~mA~~l~~~G-~~V-~v~d~ 32 (296)
T PRK15461 2 AAIAFIGLGQMGSPMASNLLKQG-HQL-QVFDV 32 (296)
T ss_pred CeEEEEeeCHHHHHHHHHHHHCC-CeE-EEEcC
Confidence 48999999999999999998775 454 34454
No 137
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=94.67 E-value=0.074 Score=49.31 Aligned_cols=34 Identities=26% Similarity=0.176 Sum_probs=30.3
Q ss_pred eeEEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491 6 KIKIGINGFGRIGRLVARVALQRDDVELVAVNDP 39 (296)
Q Consensus 6 ~i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~ 39 (296)
..++||+|+|..|+..++.+.....++-+.|.++
T Consensus 128 ~~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~r 161 (325)
T TIGR02371 128 SSVLGIIGAGRQAWTQLEALSRVFDLEEVSVYCR 161 (325)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEECC
Confidence 3689999999999999999888777899999887
No 138
>PRK06223 malate dehydrogenase; Reviewed
Probab=94.54 E-value=0.14 Score=46.85 Aligned_cols=32 Identities=28% Similarity=0.369 Sum_probs=25.2
Q ss_pred eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP 39 (296)
Q Consensus 7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~ 39 (296)
+||+|+|+|.+|..++..+..++..+++.+ |.
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~-D~ 34 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKELGDVVLF-DI 34 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEE-EC
Confidence 699999999999999998887653355544 54
No 139
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=94.47 E-value=0.094 Score=47.17 Aligned_cols=92 Identities=20% Similarity=0.186 Sum_probs=55.8
Q ss_pred eEEEEEecCHHHHHHHHHHHcCC--CcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEec
Q 022491 7 IKIGINGFGRIGRLVARVALQRD--DVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGF 84 (296)
Q Consensus 7 i~vgI~G~G~iG~~l~r~l~~~p--~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~ 84 (296)
+|||++|+|.+|+.+++-|.+.+ .-+.+.+.++ +.+...++ .+.|+ . . . .
T Consensus 2 ~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~v~~~--~~e~~~~l---~~~~g--------------~----~---~--~ 53 (266)
T COG0345 2 MKIGFIGAGNMGEAILSGLLKSGALPPEEIIVTNR--SEEKRAAL---AAEYG--------------V----V---T--T 53 (266)
T ss_pred ceEEEEccCHHHHHHHHHHHhcCCCCcceEEEeCC--CHHHHHHH---HHHcC--------------C----c---c--c
Confidence 68999999999999999999877 3356666666 33221111 22221 0 0 0 0
Q ss_pred CCCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCC
Q 022491 85 RNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAP 129 (296)
Q Consensus 85 ~d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~ 129 (296)
.+.++. ..+.|+||.|.-.....+.+.++...-..++|||..
T Consensus 54 ~~~~~~---~~~advv~LavKPq~~~~vl~~l~~~~~~~lvISia 95 (266)
T COG0345 54 TDNQEA---VEEADVVFLAVKPQDLEEVLSKLKPLTKDKLVISIA 95 (266)
T ss_pred CcHHHH---HhhCCEEEEEeChHhHHHHHHHhhcccCCCEEEEEe
Confidence 122222 257899999998877667666664311123788754
No 140
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=94.43 E-value=0.068 Score=49.67 Aligned_cols=29 Identities=28% Similarity=0.423 Sum_probs=24.5
Q ss_pred eEEEEEecCHHHHHHHHHHHcCCCcEEEEE
Q 022491 7 IKIGINGFGRIGRLVARVALQRDDVELVAV 36 (296)
Q Consensus 7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i 36 (296)
++|||+|+|.||+.+++.|.... +++.+.
T Consensus 147 ~~VgIIG~G~IG~~vA~~L~~~G-~~V~~~ 175 (330)
T PRK12480 147 MTVAIIGTGRIGAATAKIYAGFG-ATITAY 175 (330)
T ss_pred CEEEEECCCHHHHHHHHHHHhCC-CEEEEE
Confidence 58999999999999999998754 677665
No 141
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=94.43 E-value=0.13 Score=47.10 Aligned_cols=30 Identities=30% Similarity=0.572 Sum_probs=24.3
Q ss_pred EEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491 8 KIGINGFGRIGRLVARVALQRDDVELVAVNDP 39 (296)
Q Consensus 8 ~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~ 39 (296)
||||+|+|.+|..+++.|.++. .++.. .++
T Consensus 2 ~Ig~IGlG~mG~~la~~L~~~g-~~V~~-~dr 31 (298)
T TIGR00872 2 QLGLIGLGRMGANIVRRLAKRG-HDCVG-YDH 31 (298)
T ss_pred EEEEEcchHHHHHHHHHHHHCC-CEEEE-EEC
Confidence 7999999999999999998764 56654 444
No 142
>PRK07574 formate dehydrogenase; Provisional
Probab=94.39 E-value=0.064 Score=50.89 Aligned_cols=30 Identities=40% Similarity=0.516 Sum_probs=25.0
Q ss_pred eEEEEEecCHHHHHHHHHHHcCCCcEEEEEe
Q 022491 7 IKIGINGFGRIGRLVARVALQRDDVELVAVN 37 (296)
Q Consensus 7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~ 37 (296)
++|||+|+|.||+.+++.|.... +++.+.+
T Consensus 193 ktVGIvG~G~IG~~vA~~l~~fG-~~V~~~d 222 (385)
T PRK07574 193 MTVGIVGAGRIGLAVLRRLKPFD-VKLHYTD 222 (385)
T ss_pred CEEEEECCCHHHHHHHHHHHhCC-CEEEEEC
Confidence 57999999999999999998753 7776653
No 143
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=94.38 E-value=0.1 Score=45.45 Aligned_cols=28 Identities=21% Similarity=0.319 Sum_probs=22.2
Q ss_pred eEEEEEe-cCHHHHHHHHHHHcCCCcEEEE
Q 022491 7 IKIGING-FGRIGRLVARVALQRDDVELVA 35 (296)
Q Consensus 7 i~vgI~G-~G~iG~~l~r~l~~~p~~elv~ 35 (296)
|||+|+| +|.+|..+++.|.+.. .++..
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~G-~~V~v 29 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAG-NKIII 29 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCC-CEEEE
Confidence 3799998 6999999999998764 34443
No 144
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=94.35 E-value=0.13 Score=50.50 Aligned_cols=31 Identities=32% Similarity=0.322 Sum_probs=25.0
Q ss_pred eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP 39 (296)
Q Consensus 7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~ 39 (296)
+||||+|+|.+|..++..+..+. .++. +.|+
T Consensus 5 ~kIavIG~G~MG~~iA~~la~~G-~~V~-v~D~ 35 (495)
T PRK07531 5 MKAACIGGGVIGGGWAARFLLAG-IDVA-VFDP 35 (495)
T ss_pred CEEEEECcCHHHHHHHHHHHhCC-CeEE-EEeC
Confidence 58999999999999999998875 4543 4455
No 145
>PRK13243 glyoxylate reductase; Reviewed
Probab=94.19 E-value=0.086 Score=49.05 Aligned_cols=31 Identities=42% Similarity=0.573 Sum_probs=25.5
Q ss_pred eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP 39 (296)
Q Consensus 7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~ 39 (296)
.+|||+|+|.||+.+++.|.... +++.+. ++
T Consensus 151 ktvgIiG~G~IG~~vA~~l~~~G-~~V~~~-d~ 181 (333)
T PRK13243 151 KTIGIIGFGRIGQAVARRAKGFG-MRILYY-SR 181 (333)
T ss_pred CEEEEECcCHHHHHHHHHHHHCC-CEEEEE-CC
Confidence 68999999999999999998664 676554 44
No 146
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=94.15 E-value=0.19 Score=47.96 Aligned_cols=93 Identities=18% Similarity=0.251 Sum_probs=53.2
Q ss_pred eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecCCCC-hhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEecC
Q 022491 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFIS-TDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFR 85 (296)
Q Consensus 7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~~~~-~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~~ 85 (296)
.||-|+|+|-+|..+++.|.+++--++..+| +... +..+|..+ + +.+ +. + .
T Consensus 179 ~~vlvIGAGem~~lva~~L~~~g~~~i~IaN-RT~erA~~La~~~------~----~~~-------~~--------l--~ 230 (414)
T COG0373 179 KKVLVIGAGEMGELVAKHLAEKGVKKITIAN-RTLERAEELAKKL------G----AEA-------VA--------L--E 230 (414)
T ss_pred CeEEEEcccHHHHHHHHHHHhCCCCEEEEEc-CCHHHHHHHHHHh------C----Cee-------ec--------H--H
Confidence 5799999999999999999999754444444 4122 23333221 1 100 10 1 1
Q ss_pred CCCCCCcccCCCcEEEEccCCc---cCHHHHHHHHHCCCCeEEeeCCC
Q 022491 86 NPEEIPWAKTGAEYVVESTGVF---TDKDKAAAHLKGGAKKVVISAPS 130 (296)
Q Consensus 86 d~~~i~~~~~~~DvV~~at~~~---~~~~~~~~~l~~G~k~vvid~~~ 130 (296)
+..+. ..++|+||.||+.. ...+.++.+++.....++||.+-
T Consensus 231 el~~~---l~~~DvVissTsa~~~ii~~~~ve~a~~~r~~~livDiav 275 (414)
T COG0373 231 ELLEA---LAEADVVISSTSAPHPIITREMVERALKIRKRLLIVDIAV 275 (414)
T ss_pred HHHHh---hhhCCEEEEecCCCccccCHHHHHHHHhcccCeEEEEecC
Confidence 11111 35899999998763 23445555555332237788653
No 147
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=94.05 E-value=0.12 Score=47.29 Aligned_cols=30 Identities=30% Similarity=0.458 Sum_probs=24.5
Q ss_pred EEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491 8 KIGINGFGRIGRLVARVALQRDDVELVAVNDP 39 (296)
Q Consensus 8 ~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~ 39 (296)
||||+|+|.+|..+++.|.++. .+|+ +.++
T Consensus 2 ~Ig~IGlG~mG~~mA~~L~~~g-~~v~-v~dr 31 (299)
T PRK12490 2 KLGLIGLGKMGGNMAERLREDG-HEVV-GYDV 31 (299)
T ss_pred EEEEEcccHHHHHHHHHHHhCC-CEEE-EEEC
Confidence 7999999999999999998764 5665 4455
No 148
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=94.01 E-value=0.13 Score=47.72 Aligned_cols=32 Identities=28% Similarity=0.369 Sum_probs=25.5
Q ss_pred eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP 39 (296)
Q Consensus 7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~ 39 (296)
.||+|+|+|.+|..++..+....-.+ +.+.|.
T Consensus 7 ~KI~IIGaG~vG~~ia~~la~~gl~~-i~LvDi 38 (321)
T PTZ00082 7 RKISLIGSGNIGGVMAYLIVLKNLGD-VVLFDI 38 (321)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCe-EEEEeC
Confidence 68999999999999988877665446 555565
No 149
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=93.88 E-value=0.19 Score=51.78 Aligned_cols=32 Identities=31% Similarity=0.394 Sum_probs=24.7
Q ss_pred eEEEEEecCHHHHHHHHHHHcCC-CcEEEEEecC
Q 022491 7 IKIGINGFGRIGRLVARVALQRD-DVELVAVNDP 39 (296)
Q Consensus 7 i~vgI~G~G~iG~~l~r~l~~~p-~~elv~i~~~ 39 (296)
.||+|+|+|.+|..+++.|.+.. ..++.. .++
T Consensus 4 ~~I~IIG~G~mG~ala~~l~~~G~~~~V~~-~d~ 36 (735)
T PRK14806 4 GRVVVIGLGLIGGSFAKALRERGLAREVVA-VDR 36 (735)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCCEEEE-EEC
Confidence 68999999999999999998764 235444 454
No 150
>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family. This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.
Probab=93.85 E-value=0.19 Score=45.02 Aligned_cols=29 Identities=21% Similarity=0.322 Sum_probs=23.4
Q ss_pred EEEEEec-CHHHHHHHHHHHcCCCcEEEEEe
Q 022491 8 KIGINGF-GRIGRLVARVALQRDDVELVAVN 37 (296)
Q Consensus 8 ~vgI~G~-G~iG~~l~r~l~~~p~~elv~i~ 37 (296)
+|.|.|+ |.+|+.+++.|.+.. .++.++.
T Consensus 1 ~ilVtGatG~iG~~vv~~L~~~g-~~V~~~~ 30 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLLQAAS-VPFLVAS 30 (285)
T ss_pred CEEEEcCCChHHHHHHHHHHhCC-CcEEEEe
Confidence 4789999 999999999998764 5665554
No 151
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=93.83 E-value=0.33 Score=44.57 Aligned_cols=30 Identities=23% Similarity=0.391 Sum_probs=23.4
Q ss_pred eeEEEEEecCHHHHHHHHHHHcCCCcEEEEE
Q 022491 6 KIKIGINGFGRIGRLVARVALQRDDVELVAV 36 (296)
Q Consensus 6 ~i~vgI~G~G~iG~~l~r~l~~~p~~elv~i 36 (296)
++||+|+|+|.+|..+...|.+.. .++..+
T Consensus 5 ~m~I~IiG~GaiG~~lA~~L~~~g-~~V~~~ 34 (313)
T PRK06249 5 TPRIGIIGTGAIGGFYGAMLARAG-FDVHFL 34 (313)
T ss_pred CcEEEEECCCHHHHHHHHHHHHCC-CeEEEE
Confidence 379999999999999999988753 344433
No 152
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=93.71 E-value=0.12 Score=46.87 Aligned_cols=30 Identities=20% Similarity=0.310 Sum_probs=24.2
Q ss_pred EEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491 8 KIGINGFGRIGRLVARVALQRDDVELVAVNDP 39 (296)
Q Consensus 8 ~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~ 39 (296)
||||+|+|.+|..+++.|..+. .++.. .++
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G-~~V~~-~dr 30 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAG-YQLHV-TTI 30 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCC-CeEEE-EcC
Confidence 5899999999999999998764 56654 454
No 153
>PLN00203 glutamyl-tRNA reductase
Probab=93.70 E-value=0.2 Score=49.45 Aligned_cols=32 Identities=16% Similarity=0.402 Sum_probs=25.1
Q ss_pred eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP 39 (296)
Q Consensus 7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~ 39 (296)
.+|+|+|+|.+|+.+++.|..++ ++-+.|.++
T Consensus 267 kkVlVIGAG~mG~~~a~~L~~~G-~~~V~V~nR 298 (519)
T PLN00203 267 ARVLVIGAGKMGKLLVKHLVSKG-CTKMVVVNR 298 (519)
T ss_pred CEEEEEeCHHHHHHHHHHHHhCC-CCeEEEEeC
Confidence 68999999999999999998876 433444444
No 154
>PRK08655 prephenate dehydrogenase; Provisional
Probab=93.54 E-value=0.2 Score=48.40 Aligned_cols=89 Identities=18% Similarity=0.247 Sum_probs=51.7
Q ss_pred eEEEEEe-cCHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEecC
Q 022491 7 IKIGING-FGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFR 85 (296)
Q Consensus 7 i~vgI~G-~G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~~ 85 (296)
|||+|+| +|.+|+.+++.|.+.. .++..+ ++ +.+..... ...+ | + ... .
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~G-~~V~v~-~r--~~~~~~~~---a~~~------------g--v-------~~~--~ 50 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEKG-FEVIVT-GR--DPKKGKEV---AKEL------------G--V-------EYA--N 50 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHCC-CEEEEE-EC--ChHHHHHH---HHHc------------C--C-------eec--c
Confidence 3799998 5999999999998765 454443 34 22110000 0000 0 1 011 1
Q ss_pred CCCCCCcccCCCcEEEEccCCccCHHHHHHHH---HCCCCeEEeeCCC
Q 022491 86 NPEEIPWAKTGAEYVVESTGVFTDKDKAAAHL---KGGAKKVVISAPS 130 (296)
Q Consensus 86 d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l---~~G~k~vvid~~~ 130 (296)
++++. ..++|+||.|+|.....+.+..+. ..|+ +++|.++
T Consensus 51 ~~~e~---~~~aDvVIlavp~~~~~~vl~~l~~~l~~~~--iViDvsS 93 (437)
T PRK08655 51 DNIDA---AKDADIVIISVPINVTEDVIKEVAPHVKEGS--LLMDVTS 93 (437)
T ss_pred CHHHH---hccCCEEEEecCHHHHHHHHHHHHhhCCCCC--EEEEccc
Confidence 22222 247899999999876666555543 3555 8888776
No 155
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=93.54 E-value=0.43 Score=39.91 Aligned_cols=88 Identities=24% Similarity=0.277 Sum_probs=54.6
Q ss_pred eEEEEEecCH-HHHHHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEecC
Q 022491 7 IKIGINGFGR-IGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFR 85 (296)
Q Consensus 7 i~vgI~G~G~-iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~~ 85 (296)
.||.|+|+|. +|..+++.|.++. .++..+ .+ ..+ . +
T Consensus 45 k~vlViG~G~~~G~~~a~~L~~~g-~~V~v~-~r--~~~---------~-----------------l------------- 81 (168)
T cd01080 45 KKVVVVGRSNIVGKPLAALLLNRN-ATVTVC-HS--KTK---------N-----------------L------------- 81 (168)
T ss_pred CEEEEECCcHHHHHHHHHHHhhCC-CEEEEE-EC--Cch---------h-----------------H-------------
Confidence 6899999986 5888999998875 353333 22 100 0 0
Q ss_pred CCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCCCCC-----CCeEEcccChhccC
Q 022491 86 NPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKD-----APMFVVGVNEKEYK 146 (296)
Q Consensus 86 d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~~~d-----~~~~v~gvn~~~l~ 146 (296)
.+. ..++|+||.||+... -.-+..++.|. ++||.+... ...+.-+++.+.++
T Consensus 82 -~~~----l~~aDiVIsat~~~~--ii~~~~~~~~~--viIDla~prdvd~~~~~~~G~~d~~~~~ 138 (168)
T cd01080 82 -KEH----TKQADIVIVAVGKPG--LVKGDMVKPGA--VVIDVGINRVPDKSGGKLVGDVDFESAK 138 (168)
T ss_pred -HHH----HhhCCEEEEcCCCCc--eecHHHccCCe--EEEEccCCCcccccCCCeeCCcCHHHHH
Confidence 011 247899999999743 23334566676 899986542 22455667766554
No 156
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=93.51 E-value=0.12 Score=43.52 Aligned_cols=30 Identities=37% Similarity=0.627 Sum_probs=25.4
Q ss_pred eEEEEEecCHHHHHHHHHHHcCCCcEEEEEe
Q 022491 7 IKIGINGFGRIGRLVARVALQRDDVELVAVN 37 (296)
Q Consensus 7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~ 37 (296)
.+|||+|+|.||+++++.+..-. +++.+..
T Consensus 37 ~tvgIiG~G~IG~~vA~~l~~fG-~~V~~~d 66 (178)
T PF02826_consen 37 KTVGIIGYGRIGRAVARRLKAFG-MRVIGYD 66 (178)
T ss_dssp SEEEEESTSHHHHHHHHHHHHTT--EEEEEE
T ss_pred CEEEEEEEcCCcCeEeeeeecCC-ceeEEec
Confidence 68999999999999999999764 7877775
No 157
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=93.51 E-value=0.14 Score=49.13 Aligned_cols=32 Identities=25% Similarity=0.397 Sum_probs=24.8
Q ss_pred eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP 39 (296)
Q Consensus 7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~ 39 (296)
.+|+|+|+|.+|+.+++.|..++-.++. +.++
T Consensus 181 ~~VlViGaG~iG~~~a~~L~~~G~~~V~-v~~r 212 (417)
T TIGR01035 181 KKALLIGAGEMGELVAKHLLRKGVGKIL-IANR 212 (417)
T ss_pred CEEEEECChHHHHHHHHHHHHCCCCEEE-EEeC
Confidence 5899999999999999999887534444 4444
No 158
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=93.49 E-value=0.29 Score=43.52 Aligned_cols=116 Identities=13% Similarity=0.039 Sum_probs=57.6
Q ss_pred eEEEEEecCHHHHHHHHHHHcC---------C-CcEEEEEecCC-CChhhhhhcccccccCCCCcCcceeeeCCcee-EE
Q 022491 7 IKIGINGFGRIGRLVARVALQR---------D-DVELVAVNDPF-ISTDYMTYMFKYDSVHGQWKHNELKVKDEKTL-LF 74 (296)
Q Consensus 7 i~vgI~G~G~iG~~l~r~l~~~---------p-~~elv~i~~~~-~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l-~~ 74 (296)
.||.|+|+|-+|.++++.|... + .+++.-+ |.. -+...+.+.+.+.+.-|+.+ ..+..+. + .+
T Consensus 12 ~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lv-D~D~Ve~sNLnRQlf~~~dVG~~K-a~v~~~r---i~~~ 86 (244)
T TIGR03736 12 VSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVY-DDDTVSEANVGRQAFYPADVGQNK-AIVLVNR---LNQA 86 (244)
T ss_pred CeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEE-CCCEEccchhhcccCChhHCCcHH-HHHHHHH---HHhc
Confidence 7899999999999999999753 2 2344433 431 12222222221222222222 1111000 0 11
Q ss_pred CCEEEEEEec-CCCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCC--CeEEeeCCC
Q 022491 75 GEKPVAVFGF-RNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGA--KKVVISAPS 130 (296)
Q Consensus 75 ~~~~i~~~~~-~d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~--k~vvid~~~ 130 (296)
++..+..+.. .+++++ ..+.|+||+|+....++....+....+- .+..+|+..
T Consensus 87 ~~~~i~a~~~~~~~~~~---~~~~DiVi~avDn~~aR~~l~~~~~~~~~~~~~~ld~Gn 142 (244)
T TIGR03736 87 MGTDWTAHPERVERSST---LHRPDIVIGCVDNRAARLAILRAFEGGYSGYAYWLDLGN 142 (244)
T ss_pred cCceEEEEEeeeCchhh---hcCCCEEEECCCCHHHHHHHHHHHHHhcccccceecccC
Confidence 1222222221 122222 2478999999999988877655443311 136666654
No 159
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=93.25 E-value=0.2 Score=46.15 Aligned_cols=33 Identities=21% Similarity=0.306 Sum_probs=25.7
Q ss_pred eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP 39 (296)
Q Consensus 7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~ 39 (296)
.||+|+|+|.+|..++-.|...+-..-+.+.|.
T Consensus 4 ~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~ 36 (312)
T cd05293 4 NKVTVVGVGQVGMACAISILAKGLADELVLVDV 36 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 589999999999999998887765543444454
No 160
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=93.21 E-value=0.18 Score=46.44 Aligned_cols=32 Identities=25% Similarity=0.282 Sum_probs=25.5
Q ss_pred EEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491 8 KIGINGFGRIGRLVARVALQRDDVELVAVNDP 39 (296)
Q Consensus 8 ~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~ 39 (296)
||+|+|+|.+|..++-+|...+-+.-..+.|.
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di 32 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDV 32 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 69999999999999998888776654445555
No 161
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=93.20 E-value=0.21 Score=47.22 Aligned_cols=29 Identities=21% Similarity=0.361 Sum_probs=24.8
Q ss_pred eEEEEEecCHHHHHHHHHHHcCCCcEEEEE
Q 022491 7 IKIGINGFGRIGRLVARVALQRDDVELVAV 36 (296)
Q Consensus 7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i 36 (296)
.+|||+|+|.||+.+++.+.... +++.+.
T Consensus 117 ktvGIIG~G~IG~~vA~~l~a~G-~~V~~~ 145 (378)
T PRK15438 117 RTVGIVGVGNVGRRLQARLEALG-IKTLLC 145 (378)
T ss_pred CEEEEECcCHHHHHHHHHHHHCC-CEEEEE
Confidence 58999999999999999998764 777655
No 162
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=93.15 E-value=0.68 Score=42.74 Aligned_cols=33 Identities=18% Similarity=0.197 Sum_probs=26.7
Q ss_pred eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP 39 (296)
Q Consensus 7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~ 39 (296)
.||+|+|+|.+|..++-+|...+-+.-+.+.|.
T Consensus 7 ~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~ 39 (315)
T PRK00066 7 NKVVLVGDGAVGSSYAYALVNQGIADELVIIDI 39 (315)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 699999999999999999988876644445554
No 163
>PTZ00117 malate dehydrogenase; Provisional
Probab=93.06 E-value=0.5 Score=43.68 Aligned_cols=32 Identities=38% Similarity=0.471 Sum_probs=25.4
Q ss_pred eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP 39 (296)
Q Consensus 7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~ 39 (296)
.||+|+|+|.+|..+..++..++-.+ +.+.|.
T Consensus 6 ~KI~IIGaG~vG~~ia~~l~~~~~~~-l~L~Di 37 (319)
T PTZ00117 6 KKISMIGAGQIGSTVALLILQKNLGD-VVLYDV 37 (319)
T ss_pred cEEEEECCCHHHHHHHHHHHHCCCCe-EEEEEC
Confidence 68999999999999998888776445 455555
No 164
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=93.06 E-value=0.16 Score=46.21 Aligned_cols=31 Identities=26% Similarity=0.430 Sum_probs=24.4
Q ss_pred eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP 39 (296)
Q Consensus 7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~ 39 (296)
.||+|+|+|.+|..++..+.... .++... ++
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~G-~~V~l~-d~ 35 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALAG-YDVLLN-DV 35 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHCC-CeEEEE-eC
Confidence 68999999999999999988764 455443 44
No 165
>PF02670 DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; InterPro: IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase synthesises 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose 5-phosphate in a single step by intramolecular rearrangement and reduction and is responsible for terpenoid biosynthesis in some organisms []. In Arabidopsis thaliana 1-deoxy-D-xylulose 5-phosphate reductoisomerase is the first committed enzyme of the non-mevalonate pathway for isoprenoid biosynthesis. The enzyme requires Mn2+, Co2+ or Mg2+ for activity, with the first being most effective. This domain is found at the N terminus of bacterial and plant 1-deoxy-D-xylulose 5-phosphate reductoisomerases.; GO: 0070402 NADPH binding, 0055114 oxidation-reduction process; PDB: 1R0K_D 1R0L_C 3A14_A 3A06_A 3AUA_A 3AU9_B 3AU8_B 3IIE_A 2Y1D_B 4AIC_A ....
Probab=93.02 E-value=0.22 Score=39.81 Aligned_cols=38 Identities=26% Similarity=0.351 Sum_probs=32.4
Q ss_pred EEEEec-CHHHHHHHHHHHcCC-CcEEEEEecCCCChhhhh
Q 022491 9 IGINGF-GRIGRLVARVALQRD-DVELVAVNDPFISTDYMT 47 (296)
Q Consensus 9 vgI~G~-G~iG~~l~r~l~~~p-~~elv~i~~~~~~~~~~a 47 (296)
|+|.|+ |-||+..++.+.+|| +|+++++... ++.+.+.
T Consensus 1 i~ILGsTGSIG~qtLdVi~~~~d~f~v~~Lsa~-~n~~~L~ 40 (129)
T PF02670_consen 1 IAILGSTGSIGTQTLDVIRKHPDKFEVVALSAG-SNIEKLA 40 (129)
T ss_dssp EEEESTTSHHHHHHHHHHHHCTTTEEEEEEEES-STHHHHH
T ss_pred CEEEcCCcHHHHHHHHHHHhCCCceEEEEEEcC-CCHHHHH
Confidence 689999 999999999999998 4999999986 6665443
No 166
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=93.00 E-value=0.21 Score=47.81 Aligned_cols=28 Identities=29% Similarity=0.426 Sum_probs=23.3
Q ss_pred EEEEEecCHHHHHHHHHHHcCCCcEEEEE
Q 022491 8 KIGINGFGRIGRLVARVALQRDDVELVAV 36 (296)
Q Consensus 8 ~vgI~G~G~iG~~l~r~l~~~p~~elv~i 36 (296)
||||+|+|++|..++..|.+.. .++.++
T Consensus 2 kI~vIGlG~~G~~lA~~La~~G-~~V~~~ 29 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLADLG-HEVTGV 29 (411)
T ss_pred EEEEECCCchhHHHHHHHHhcC-CeEEEE
Confidence 7999999999999999998764 455555
No 167
>PLN00016 RNA-binding protein; Provisional
Probab=92.82 E-value=0.3 Score=45.93 Aligned_cols=32 Identities=25% Similarity=0.226 Sum_probs=26.7
Q ss_pred CeeEEEEE----ec-CHHHHHHHHHHHcCCCcEEEEEe
Q 022491 5 KKIKIGIN----GF-GRIGRLVARVALQRDDVELVAVN 37 (296)
Q Consensus 5 m~i~vgI~----G~-G~iG~~l~r~l~~~p~~elv~i~ 37 (296)
|++||.|. |+ |++|+.+++.|.+.. .++.++.
T Consensus 51 ~~~~VLVt~~~~GatG~iG~~lv~~L~~~G-~~V~~l~ 87 (378)
T PLN00016 51 EKKKVLIVNTNSGGHAFIGFYLAKELVKAG-HEVTLFT 87 (378)
T ss_pred ccceEEEEeccCCCceeEhHHHHHHHHHCC-CEEEEEe
Confidence 45789999 99 999999999998875 5666665
No 168
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=92.79 E-value=0.19 Score=46.35 Aligned_cols=99 Identities=18% Similarity=0.223 Sum_probs=54.1
Q ss_pred eEEEEEecCHHHHHHHHHHHcCC-CcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEecC
Q 022491 7 IKIGINGFGRIGRLVARVALQRD-DVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFR 85 (296)
Q Consensus 7 i~vgI~G~G~iG~~l~r~l~~~p-~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~~ 85 (296)
+||+|+|+|..|..|+..|.++. ++.+ | .+ +.+.+.. +..+...++|- ..+. +. ..+.. ..
T Consensus 2 ~kI~ViGaGswGTALA~~la~ng~~V~l-w--~r--~~~~~~~-i~~~~~N~~yL-p~i~------lp---~~l~a--t~ 63 (329)
T COG0240 2 MKIAVIGAGSWGTALAKVLARNGHEVRL-W--GR--DEEIVAE-INETRENPKYL-PGIL------LP---PNLKA--TT 63 (329)
T ss_pred ceEEEEcCChHHHHHHHHHHhcCCeeEE-E--ec--CHHHHHH-HHhcCcCcccc-CCcc------CC---ccccc--cc
Confidence 68999999999999999998764 3433 2 22 2222222 11111112111 0000 10 01111 12
Q ss_pred CCCCCCcccCCCcEEEEccCCccCHHHHHHH---HHCCCCeEEeeC
Q 022491 86 NPEEIPWAKTGAEYVVESTGVFTDKDKAAAH---LKGGAKKVVISA 128 (296)
Q Consensus 86 d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~---l~~G~k~vvid~ 128 (296)
|.++. ..++|+++.+.|+..-++.+.++ +..+. .++++
T Consensus 64 Dl~~a---~~~ad~iv~avPs~~~r~v~~~l~~~l~~~~--~iv~~ 104 (329)
T COG0240 64 DLAEA---LDGADIIVIAVPSQALREVLRQLKPLLLKDA--IIVSA 104 (329)
T ss_pred CHHHH---HhcCCEEEEECChHHHHHHHHHHhhhccCCC--eEEEE
Confidence 44433 35699999999998888777664 44555 45544
No 169
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=92.77 E-value=0.23 Score=47.05 Aligned_cols=29 Identities=21% Similarity=0.327 Sum_probs=24.3
Q ss_pred eEEEEEecCHHHHHHHHHHHcCCCcEEEEE
Q 022491 7 IKIGINGFGRIGRLVARVALQRDDVELVAV 36 (296)
Q Consensus 7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i 36 (296)
.+|||+|+|.||+.+++.+.... +++.+.
T Consensus 117 ktvGIIG~G~IG~~va~~l~a~G-~~V~~~ 145 (381)
T PRK00257 117 RTYGVVGAGHVGGRLVRVLRGLG-WKVLVC 145 (381)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC-CEEEEE
Confidence 58999999999999999998764 676554
No 170
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=92.68 E-value=0.22 Score=45.37 Aligned_cols=26 Identities=27% Similarity=0.385 Sum_probs=22.2
Q ss_pred EEEEEecCHHHHHHHHHHHcCCCcEEE
Q 022491 8 KIGINGFGRIGRLVARVALQRDDVELV 34 (296)
Q Consensus 8 ~vgI~G~G~iG~~l~r~l~~~p~~elv 34 (296)
|||++|.|.+|..+++.|.+.. .++.
T Consensus 2 ~Ig~IGlG~MG~~ma~~L~~~G-~~v~ 27 (292)
T PRK15059 2 KLGFIGLGIMGTPMAINLARAG-HQLH 27 (292)
T ss_pred eEEEEccCHHHHHHHHHHHHCC-CeEE
Confidence 7999999999999999998775 4554
No 171
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=92.68 E-value=0.27 Score=45.71 Aligned_cols=29 Identities=28% Similarity=0.342 Sum_probs=24.0
Q ss_pred eEEEEEecCHHHHHHHHHHHcCCCcEEEEE
Q 022491 7 IKIGINGFGRIGRLVARVALQRDDVELVAV 36 (296)
Q Consensus 7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i 36 (296)
.+|||+|+|.+|+.+++.|.... ++++..
T Consensus 18 ktIgIIG~GsmG~AlA~~L~~sG-~~Vvv~ 46 (330)
T PRK05479 18 KKVAIIGYGSQGHAHALNLRDSG-VDVVVG 46 (330)
T ss_pred CEEEEEeeHHHHHHHHHHHHHCC-CEEEEE
Confidence 68999999999999999998764 566543
No 172
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=92.61 E-value=0.27 Score=44.54 Aligned_cols=29 Identities=14% Similarity=0.243 Sum_probs=22.9
Q ss_pred eEEEEEecCHHHHHHHHHHHcCCCcEEEEE
Q 022491 7 IKIGINGFGRIGRLVARVALQRDDVELVAV 36 (296)
Q Consensus 7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i 36 (296)
.||+|+|+|.+|..++..+.++. .++..+
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G-~~V~l~ 32 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHG-FDVTIY 32 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcC-CeEEEE
Confidence 58999999999999999988764 444333
No 173
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=92.54 E-value=0.44 Score=46.22 Aligned_cols=82 Identities=17% Similarity=0.229 Sum_probs=58.2
Q ss_pred eEEEEEec----CHHHHHHHHHHHcCCC-cEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEE
Q 022491 7 IKIGINGF----GRIGRLVARVALQRDD-VELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAV 81 (296)
Q Consensus 7 i~vgI~G~----G~iG~~l~r~l~~~p~-~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~ 81 (296)
.+|+|+|+ |..|..+++.|.+++. =++..||-. . +.+++ +++
T Consensus 8 ~siavvGaS~~~~~~g~~~~~~l~~~gf~g~v~~Vnp~-~-----------~~i~G---------------------~~~ 54 (447)
T TIGR02717 8 KSVAVIGASRDPGKVGYAIMKNLIEGGYKGKIYPVNPK-A-----------GEILG---------------------VKA 54 (447)
T ss_pred CEEEEEccCCCCCchHHHHHHHHHhCCCCCcEEEECCC-C-----------CccCC---------------------ccc
Confidence 57999999 6789999999998763 256666522 1 11111 112
Q ss_pred EecCCCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEe
Q 022491 82 FGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVI 126 (296)
Q Consensus 82 ~~~~d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvi 126 (296)
+. +.++++ ..+|+++.|+|.....+.++++.++|+|.+++
T Consensus 55 ~~--sl~~lp---~~~Dlavi~vp~~~~~~~l~e~~~~gv~~~vi 94 (447)
T TIGR02717 55 YP--SVLEIP---DPVDLAVIVVPAKYVPQVVEECGEKGVKGAVV 94 (447)
T ss_pred cC--CHHHCC---CCCCEEEEecCHHHHHHHHHHHHhcCCCEEEE
Confidence 21 344553 47899999999999999999999999997765
No 174
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=92.53 E-value=0.18 Score=48.41 Aligned_cols=32 Identities=28% Similarity=0.452 Sum_probs=24.7
Q ss_pred eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP 39 (296)
Q Consensus 7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~ 39 (296)
.+|+|+|+|.+|+.+++.|...+ ++-+.+.++
T Consensus 183 ~~vlViGaG~iG~~~a~~L~~~G-~~~V~v~~r 214 (423)
T PRK00045 183 KKVLVIGAGEMGELVAKHLAEKG-VRKITVANR 214 (423)
T ss_pred CEEEEECchHHHHHHHHHHHHCC-CCeEEEEeC
Confidence 58999999999999999998765 433344444
No 175
>PLN02602 lactate dehydrogenase
Probab=92.48 E-value=0.22 Score=46.69 Aligned_cols=33 Identities=27% Similarity=0.471 Sum_probs=25.9
Q ss_pred eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP 39 (296)
Q Consensus 7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~ 39 (296)
.||+|+|+|.+|..++-.|...+-..-..+.|.
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi 70 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDV 70 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeC
Confidence 599999999999999998887765544444454
No 176
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=92.39 E-value=0.3 Score=47.86 Aligned_cols=37 Identities=22% Similarity=0.362 Sum_probs=28.7
Q ss_pred CCCCCeeEEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491 1 MAGDKKIKIGINGFGRIGRLVARVALQRDDVELVAVNDP 39 (296)
Q Consensus 1 m~~~m~i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~ 39 (296)
|....+.+||++|.|.+|..+++.|.++. ++|. |.++
T Consensus 1 ~~~~~~~~IG~IGLG~MG~~mA~nL~~~G-~~V~-V~NR 37 (493)
T PLN02350 1 MASAALSRIGLAGLAVMGQNLALNIAEKG-FPIS-VYNR 37 (493)
T ss_pred CCCCCCCCEEEEeeHHHHHHHHHHHHhCC-CeEE-EECC
Confidence 44444578999999999999999999886 5554 4455
No 177
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=92.36 E-value=1.1 Score=41.50 Aligned_cols=30 Identities=17% Similarity=0.227 Sum_probs=24.0
Q ss_pred eEEEEEecCHHHHHHHHHHHcCCCcEEEEEe
Q 022491 7 IKIGINGFGRIGRLVARVALQRDDVELVAVN 37 (296)
Q Consensus 7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~ 37 (296)
.||||+|+|.+|..+++.|.... ++++...
T Consensus 4 kkIgiIG~G~mG~AiA~~L~~sG-~~Viv~~ 33 (314)
T TIGR00465 4 KTVAIIGYGSQGHAQALNLRDSG-LNVIVGL 33 (314)
T ss_pred CEEEEEeEcHHHHHHHHHHHHCC-CeEEEEE
Confidence 57999999999999999998765 5554333
No 178
>PRK14982 acyl-ACP reductase; Provisional
Probab=92.29 E-value=0.17 Score=47.13 Aligned_cols=89 Identities=20% Similarity=0.238 Sum_probs=50.2
Q ss_pred eEEEEEec-CHHHHHHHHHHHcCCCc-EEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEec
Q 022491 7 IKIGINGF-GRIGRLVARVALQRDDV-ELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGF 84 (296)
Q Consensus 7 i~vgI~G~-G~iG~~l~r~l~~~p~~-elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~ 84 (296)
.+|.|+|+ |.||++++|.|.++..+ +++.++ + +...+ +.+ ... +. .+ .+ .
T Consensus 156 k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~-R--~~~rl-~~L--a~e---l~-------~~-~i---------~-- 207 (340)
T PRK14982 156 ATVAVVGATGDIGSAVCRWLDAKTGVAELLLVA-R--QQERL-QEL--QAE---LG-------GG-KI---------L-- 207 (340)
T ss_pred CEEEEEccChHHHHHHHHHHHhhCCCCEEEEEc-C--CHHHH-HHH--HHH---hc-------cc-cH---------H--
Confidence 58999999 99999999999864323 454443 3 22111 111 110 00 00 00 0
Q ss_pred CCCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCC
Q 022491 85 RNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAP 129 (296)
Q Consensus 85 ~d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~ 129 (296)
+.++. ..++|+||.+++.......-+..++.++ +++|.+
T Consensus 208 -~l~~~---l~~aDiVv~~ts~~~~~~I~~~~l~~~~--~viDiA 246 (340)
T PRK14982 208 -SLEEA---LPEADIVVWVASMPKGVEIDPETLKKPC--LMIDGG 246 (340)
T ss_pred -hHHHH---HccCCEEEECCcCCcCCcCCHHHhCCCe--EEEEec
Confidence 11211 2579999999987443223334557777 888864
No 179
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=92.22 E-value=0.36 Score=44.14 Aligned_cols=30 Identities=37% Similarity=0.616 Sum_probs=24.1
Q ss_pred EEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491 8 KIGINGFGRIGRLVARVALQRDDVELVAVNDP 39 (296)
Q Consensus 8 ~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~ 39 (296)
||||+|+|.+|..+++.|.+.. .++.. .++
T Consensus 2 ~Ig~IGlG~MG~~mA~~L~~~g-~~v~v-~dr 31 (301)
T PRK09599 2 QLGMIGLGRMGGNMARRLLRGG-HEVVG-YDR 31 (301)
T ss_pred EEEEEcccHHHHHHHHHHHHCC-CeEEE-EEC
Confidence 7999999999999999998764 55544 454
No 180
>PTZ00325 malate dehydrogenase; Provisional
Probab=92.14 E-value=1.1 Score=41.63 Aligned_cols=34 Identities=24% Similarity=0.338 Sum_probs=25.9
Q ss_pred eeEEEEEec-CHHHHHHHHHHHcCCCcEEEEEecC
Q 022491 6 KIKIGINGF-GRIGRLVARVALQRDDVELVAVNDP 39 (296)
Q Consensus 6 ~i~vgI~G~-G~iG~~l~r~l~~~p~~elv~i~~~ 39 (296)
|.||+|+|+ |.+|..++..|...+...-+.+.|.
T Consensus 8 ~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di 42 (321)
T PTZ00325 8 MFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDI 42 (321)
T ss_pred CCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEec
Confidence 369999999 9999999998887665544444454
No 181
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=92.11 E-value=0.56 Score=42.56 Aligned_cols=29 Identities=17% Similarity=0.368 Sum_probs=22.8
Q ss_pred eEEEEEecCHHHHHHHHHHHcCCCcEEEEE
Q 022491 7 IKIGINGFGRIGRLVARVALQRDDVELVAV 36 (296)
Q Consensus 7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i 36 (296)
|||+|+|+|.+|..+...|.+.. .++..+
T Consensus 1 mkI~IiG~G~iG~~~a~~L~~~g-~~V~~~ 29 (305)
T PRK12921 1 MRIAVVGAGAVGGTFGGRLLEAG-RDVTFL 29 (305)
T ss_pred CeEEEECCCHHHHHHHHHHHHCC-CceEEE
Confidence 47999999999999999998764 344444
No 182
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=92.10 E-value=0.31 Score=44.81 Aligned_cols=30 Identities=33% Similarity=0.524 Sum_probs=25.1
Q ss_pred eEEEEEec-CHHHHHHHHHHHcCCCc-EEEEE
Q 022491 7 IKIGINGF-GRIGRLVARVALQRDDV-ELVAV 36 (296)
Q Consensus 7 i~vgI~G~-G~iG~~l~r~l~~~p~~-elv~i 36 (296)
+||+|+|+ |++|..++..|...+.. +++.+
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lv 32 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKEDVVKEINLI 32 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEE
Confidence 48999999 99999999999987754 56665
No 183
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=92.01 E-value=0.66 Score=39.86 Aligned_cols=31 Identities=26% Similarity=0.542 Sum_probs=26.4
Q ss_pred eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP 39 (296)
Q Consensus 7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~ 39 (296)
++++|+|+|.+|+.+++.|.+.. .+++ +.|.
T Consensus 29 k~v~I~G~G~vG~~~A~~L~~~G-~~Vv-v~D~ 59 (200)
T cd01075 29 KTVAVQGLGKVGYKLAEHLLEEG-AKLI-VADI 59 (200)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC-CEEE-EEcC
Confidence 68999999999999999998875 6777 5555
No 184
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=91.92 E-value=0.38 Score=44.21 Aligned_cols=33 Identities=27% Similarity=0.326 Sum_probs=25.9
Q ss_pred eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP 39 (296)
Q Consensus 7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~ 39 (296)
|||+|+|+|++|..++..|...+-...+.+.|+
T Consensus 1 mkI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~ 33 (308)
T cd05292 1 MKVAIVGAGFVGSTTAYALLLRGLASEIVLVDI 33 (308)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCCEEEEEEC
Confidence 379999999999999999988765444445555
No 185
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=91.89 E-value=0.41 Score=45.14 Aligned_cols=23 Identities=22% Similarity=0.455 Sum_probs=20.7
Q ss_pred eeEEEEEecCHHHHHHHHHHHcC
Q 022491 6 KIKIGINGFGRIGRLVARVALQR 28 (296)
Q Consensus 6 ~i~vgI~G~G~iG~~l~r~l~~~ 28 (296)
++||+|+|+|..|..++..|...
T Consensus 11 ~~ki~ViGaG~wGtAlA~~l~~n 33 (365)
T PTZ00345 11 PLKVSVIGSGNWGSAISKVVGEN 33 (365)
T ss_pred CCeEEEECCCHHHHHHHHHHHhc
Confidence 36899999999999999999865
No 186
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=91.88 E-value=0.33 Score=44.98 Aligned_cols=33 Identities=18% Similarity=0.132 Sum_probs=28.2
Q ss_pred eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP 39 (296)
Q Consensus 7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~ 39 (296)
.+++|+|+|..|+..++.|.....++-+.|.++
T Consensus 130 ~~v~iiGaG~qA~~~~~al~~~~~i~~v~V~~R 162 (326)
T TIGR02992 130 SVVAIFGAGMQARLQLEALTLVRDIRSARIWAR 162 (326)
T ss_pred cEEEEECCCHHHHHHHHHHHHhCCccEEEEECC
Confidence 589999999999999999975445888888877
No 187
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=91.82 E-value=0.42 Score=43.29 Aligned_cols=29 Identities=28% Similarity=0.276 Sum_probs=22.9
Q ss_pred eEEEEEecCHHHHHHHHHHHcCCCcEEEEE
Q 022491 7 IKIGINGFGRIGRLVARVALQRDDVELVAV 36 (296)
Q Consensus 7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i 36 (296)
.||+|+|+|.+|..++..|..+. .++..+
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G-~~V~~~ 30 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSG-FQTTLV 30 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCC-CcEEEE
Confidence 47999999999999999988764 444433
No 188
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=91.81 E-value=1 Score=40.65 Aligned_cols=30 Identities=33% Similarity=0.439 Sum_probs=23.4
Q ss_pred eEEEEEecCHHHHHHHHHHHcCCCcEEEEEe
Q 022491 7 IKIGINGFGRIGRLVARVALQRDDVELVAVN 37 (296)
Q Consensus 7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~ 37 (296)
+||+|+|+|.+|..++..|.+.. .++..+.
T Consensus 1 m~I~IiG~G~~G~~~a~~L~~~g-~~V~~~~ 30 (304)
T PRK06522 1 MKIAILGAGAIGGLFGAALAQAG-HDVTLVA 30 (304)
T ss_pred CEEEEECCCHHHHHHHHHHHhCC-CeEEEEE
Confidence 37999999999999999988764 3554443
No 189
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=91.60 E-value=0.44 Score=43.70 Aligned_cols=29 Identities=31% Similarity=0.402 Sum_probs=24.0
Q ss_pred EEEEEecCHHHHHHHHHHHcCCCc-EEEEE
Q 022491 8 KIGINGFGRIGRLVARVALQRDDV-ELVAV 36 (296)
Q Consensus 8 ~vgI~G~G~iG~~l~r~l~~~p~~-elv~i 36 (296)
||+|+|+|.+|+.++..|...+-. +++.+
T Consensus 2 kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~ 31 (306)
T cd05291 2 KVVIIGAGHVGSSFAYSLVNQGIADELVLI 31 (306)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCCCEEEEE
Confidence 799999999999999999887654 55444
No 190
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=91.48 E-value=0.69 Score=43.91 Aligned_cols=30 Identities=33% Similarity=0.566 Sum_probs=25.5
Q ss_pred eEEEEEec-CHHHHHHHHHHHcCCCcEEEEEe
Q 022491 7 IKIGINGF-GRIGRLVARVALQRDDVELVAVN 37 (296)
Q Consensus 7 i~vgI~G~-G~iG~~l~r~l~~~p~~elv~i~ 37 (296)
+||.|.|+ |++|+.+++.|.++. .+++++.
T Consensus 61 ~kVLVtGatG~IG~~l~~~Ll~~G-~~V~~l~ 91 (390)
T PLN02657 61 VTVLVVGATGYIGKFVVRELVRRG-YNVVAVA 91 (390)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCC-CEEEEEE
Confidence 68999999 999999999998875 5666664
No 191
>COG5322 Predicted dehydrogenase [General function prediction only]
Probab=91.42 E-value=1.1 Score=40.41 Aligned_cols=25 Identities=28% Similarity=0.357 Sum_probs=21.6
Q ss_pred eEEEEEec-CHHHHHHHHHHHcCCCc
Q 022491 7 IKIGINGF-GRIGRLVARVALQRDDV 31 (296)
Q Consensus 7 i~vgI~G~-G~iG~~l~r~l~~~p~~ 31 (296)
-.|||+|+ |-||..+.|.|..|-..
T Consensus 168 atvaivGa~G~Ia~~Iar~la~~~~~ 193 (351)
T COG5322 168 ATVAIVGATGDIASAIARWLAPKVGV 193 (351)
T ss_pred CeEEEecCCchHHHHHHHHhccccCE
Confidence 36999999 99999999999877543
No 192
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=91.34 E-value=0.42 Score=45.77 Aligned_cols=31 Identities=13% Similarity=0.302 Sum_probs=24.6
Q ss_pred eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP 39 (296)
Q Consensus 7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~ 39 (296)
.+|+|+|+|.+|+.+++.+.... ++++. .+.
T Consensus 203 ktVvViG~G~IG~~va~~ak~~G-a~ViV-~d~ 233 (413)
T cd00401 203 KVAVVAGYGDVGKGCAQSLRGQG-ARVIV-TEV 233 (413)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC-CEEEE-EEC
Confidence 48999999999999999988775 46544 444
No 193
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=91.26 E-value=0.92 Score=41.78 Aligned_cols=30 Identities=30% Similarity=0.439 Sum_probs=23.7
Q ss_pred eEEEEEecCHHHHHHHHHHHcCCCc-EEEEE
Q 022491 7 IKIGINGFGRIGRLVARVALQRDDV-ELVAV 36 (296)
Q Consensus 7 i~vgI~G~G~iG~~l~r~l~~~p~~-elv~i 36 (296)
+||+|+|+|.+|..++-+|.+.+-. |++-+
T Consensus 1 ~KVaviGaG~VG~s~a~~l~~~~~~~el~Li 31 (313)
T COG0039 1 MKVAVIGAGNVGSSLAFLLLLQGLGSELVLI 31 (313)
T ss_pred CeEEEECCChHHHHHHHHHhcccccceEEEE
Confidence 4899999999999999999776644 44433
No 194
>KOG2711 consensus Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase [Energy production and conversion]
Probab=91.10 E-value=0.81 Score=42.37 Aligned_cols=105 Identities=22% Similarity=0.157 Sum_probs=54.5
Q ss_pred eeEEEEEecCHHHHHHHHHHHc----CCC----cEEEEEecCCCCh--hhhhhcccccccCCCCcCcceeeeCCceeEEC
Q 022491 6 KIKIGINGFGRIGRLVARVALQ----RDD----VELVAVNDPFIST--DYMTYMFKYDSVHGQWKHNELKVKDEKTLLFG 75 (296)
Q Consensus 6 ~i~vgI~G~G~iG~~l~r~l~~----~p~----~elv~i~~~~~~~--~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~ 75 (296)
++||+|+|.|..|..+++++.+ +|. ++. ++....... +.+... +.+.|- .++.-.|..+.-|
T Consensus 21 ~~kV~ivGsGnWGsaiaki~~~n~~~~~~f~~~Vrm-wv~ee~i~~~~~~L~ei--IN~~he-----N~KYlpg~~lP~N 92 (372)
T KOG2711|consen 21 PLKVCIVGSGNWGSAIAKIVGENVKEFPIFDPQVRM-WVFEEEINGEAEKLTEI--INSRHE-----NVKYLPGIKLPEN 92 (372)
T ss_pred ceEEEEEccChHHHHHHHHHhhhhhhccccCceeeE-EEeccccCChhHHHHHH--hccccc-----cccccCCccCCCC
Confidence 4899999999999999998864 332 211 222110111 111111 123331 1111111112111
Q ss_pred CEEEEEEecCCCCCCCcccCCCcEEEEccCCccCHHHHHHH---HHCCCCeEEeeC
Q 022491 76 EKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAH---LKGGAKKVVISA 128 (296)
Q Consensus 76 ~~~i~~~~~~d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~---l~~G~k~vvid~ 128 (296)
+....|..+.- .+.|+++++.||.......+++ ++.++ ..||+
T Consensus 93 -----vvAv~dl~ea~---~dADilvf~vPhQf~~~ic~~l~g~vk~~~--~aISL 138 (372)
T KOG2711|consen 93 -----VVAVPDLVEAA---KDADILVFVVPHQFIPRICEQLKGYVKPGA--TAISL 138 (372)
T ss_pred -----eEecchHHHHh---ccCCEEEEeCChhhHHHHHHHHhcccCCCC--eEEEe
Confidence 11112343432 3789999999998887776665 45666 55665
No 195
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.01 E-value=1.6 Score=42.52 Aligned_cols=90 Identities=20% Similarity=0.174 Sum_probs=51.8
Q ss_pred eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEecCC
Q 022491 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRN 86 (296)
Q Consensus 7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~~d 86 (296)
.||.|+|+|.+|.++++.|.++. .+++.+ +. .+......+. . .+. ..| + .++....
T Consensus 17 ~~v~viG~G~~G~~~A~~L~~~G-~~V~~~-d~-~~~~~~~~~~---~---~l~------~~g--v-------~~~~~~~ 72 (480)
T PRK01438 17 LRVVVAGLGVSGFAAADALLELG-ARVTVV-DD-GDDERHRALA---A---ILE------ALG--A-------TVRLGPG 72 (480)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC-CEEEEE-eC-CchhhhHHHH---H---HHH------HcC--C-------EEEECCC
Confidence 58999999999999999998876 565444 43 1211000000 0 000 001 1 1221112
Q ss_pred CCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEe
Q 022491 87 PEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVI 126 (296)
Q Consensus 87 ~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvi 126 (296)
++ . ..++|+||.++|.--....+..+.+.|. .++
T Consensus 73 ~~-~---~~~~D~Vv~s~Gi~~~~~~~~~a~~~gi--~v~ 106 (480)
T PRK01438 73 PT-L---PEDTDLVVTSPGWRPDAPLLAAAADAGI--PVW 106 (480)
T ss_pred cc-c---cCCCCEEEECCCcCCCCHHHHHHHHCCC--eec
Confidence 22 1 2468999999998666677777778887 444
No 196
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=90.96 E-value=0.63 Score=43.10 Aligned_cols=32 Identities=25% Similarity=0.374 Sum_probs=26.2
Q ss_pred eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP 39 (296)
Q Consensus 7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~ 39 (296)
.+|||+|+|.+|+.+++.|.... ++++..+++
T Consensus 17 KtVGIIG~GsIG~amA~nL~d~G-~~ViV~~r~ 48 (335)
T PRK13403 17 KTVAVIGYGSQGHAQAQNLRDSG-VEVVVGVRP 48 (335)
T ss_pred CEEEEEeEcHHHHHHHHHHHHCc-CEEEEEECc
Confidence 58999999999999999998764 777665443
No 197
>PRK05678 succinyl-CoA synthetase subunit alpha; Validated
Probab=90.94 E-value=0.78 Score=41.89 Aligned_cols=85 Identities=18% Similarity=0.149 Sum_probs=57.2
Q ss_pred eeEEEEEec-CHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEec
Q 022491 6 KIKIGINGF-GRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGF 84 (296)
Q Consensus 6 ~i~vgI~G~-G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~ 84 (296)
+-||-|.|. |.+|+.+++.|.+.+.-.+..||-. .. ++... | ++.+.
T Consensus 8 ~~~~~v~~~~~~~g~~~l~~l~~~g~~~v~pVnp~--~~--------~~~v~-------------------G--~~~y~- 55 (291)
T PRK05678 8 DTKVIVQGITGKQGTFHTEQMLAYGTNIVGGVTPG--KG--------GTTVL-------------------G--LPVFN- 55 (291)
T ss_pred CCeEEEeCCCchHHHHHHHHHHHCCCCEEEEECCC--CC--------CCeEe-------------------C--eeccC-
Confidence 368999999 9999999999987653344455421 10 01111 0 11222
Q ss_pred CCCCCCCcccCC--CcEEEEccCCccCHHHHHHHHHCCCCeEEe
Q 022491 85 RNPEEIPWAKTG--AEYVVESTGVFTDKDKAAAHLKGGAKKVVI 126 (296)
Q Consensus 85 ~d~~~i~~~~~~--~DvV~~at~~~~~~~~~~~~l~~G~k~vvi 126 (296)
+.++++ .. +|+++.++|.....+.++++.++|+|.++|
T Consensus 56 -sv~dlp---~~~~~DlAvi~vp~~~v~~~l~e~~~~gvk~avI 95 (291)
T PRK05678 56 -TVAEAV---EATGANASVIYVPPPFAADAILEAIDAGIDLIVC 95 (291)
T ss_pred -CHHHHh---hccCCCEEEEEcCHHHHHHHHHHHHHCCCCEEEE
Confidence 334443 23 899999999999999999999999997655
No 198
>PRK14030 glutamate dehydrogenase; Provisional
Probab=90.85 E-value=1.5 Score=42.30 Aligned_cols=104 Identities=16% Similarity=0.272 Sum_probs=59.2
Q ss_pred eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecCCCCh--------hhhhhcccccccCCCCcCcceeeeCCceeEECCEE
Q 022491 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFIST--------DYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKP 78 (296)
Q Consensus 7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~~~~~--------~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~ 78 (296)
.||+|=|+|.+|..+++.|.+. ..++++|+|..... +.+.+++.+...++... .. ... .+.+.
T Consensus 229 ~~vaIQGfGnVG~~aA~~L~e~-GakvVavSD~~G~i~d~~Gld~~~l~~l~~~k~~~~~~~-~~--~~~----~~~ga- 299 (445)
T PRK14030 229 KTVAISGFGNVAWGAATKATEL-GAKVVTISGPDGYIYDPDGISGEKIDYMLELRASGNDIV-AP--YAE----KFPGS- 299 (445)
T ss_pred CEEEEECCCHHHHHHHHHHHHC-CCEEEEEEcCCceEECCCCCCHHHHHHHHHHHHhcCccH-HH--HHh----cCCCC-
Confidence 6899999999999999999876 49999987652221 11111221111111000 00 000 11111
Q ss_pred EEEEecCCCCCCCcccCCCcEEEEcc-CCccCHHHHHHHHHCCCCeEEe
Q 022491 79 VAVFGFRNPEEIPWAKTGAEYVVEST-GVFTDKDKAAAHLKGGAKKVVI 126 (296)
Q Consensus 79 i~~~~~~d~~~i~~~~~~~DvV~~at-~~~~~~~~~~~~l~~G~k~vvi 126 (296)
... +.+++ | ..++|+.+-|. +...+.+.++.+.+.+|| +|+
T Consensus 300 -~~i---~~~~~-~-~~~cDVliPcAl~n~I~~~na~~l~~~~ak-~V~ 341 (445)
T PRK14030 300 -TFF---AGKKP-W-EQKVDIALPCATQNELNGEDADKLIKNGVL-CVA 341 (445)
T ss_pred -EEc---CCccc-e-eccccEEeeccccccCCHHHHHHHHHcCCe-EEE
Confidence 111 34454 6 36899988765 456667778888888886 444
No 199
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=90.82 E-value=0.57 Score=45.05 Aligned_cols=29 Identities=14% Similarity=0.297 Sum_probs=23.8
Q ss_pred eEEEEEecCHHHHHHHHHHHcCCCcEEEEE
Q 022491 7 IKIGINGFGRIGRLVARVALQRDDVELVAV 36 (296)
Q Consensus 7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i 36 (296)
.+|+|+|+|.+|+.+++.+.... ++++.+
T Consensus 213 k~VlViG~G~IG~~vA~~lr~~G-a~ViV~ 241 (425)
T PRK05476 213 KVVVVAGYGDVGKGCAQRLRGLG-ARVIVT 241 (425)
T ss_pred CEEEEECCCHHHHHHHHHHHhCC-CEEEEE
Confidence 57999999999999999998775 564443
No 200
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=90.72 E-value=0.7 Score=42.45 Aligned_cols=32 Identities=25% Similarity=0.291 Sum_probs=24.8
Q ss_pred eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP 39 (296)
Q Consensus 7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~ 39 (296)
+||+|+|+|++|..++..+..+...++ .+.|.
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~~V-vlvDi 33 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELADL-VLLDV 33 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCeE-EEEeC
Confidence 489999999999999999888654464 44454
No 201
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=90.42 E-value=1.3 Score=41.34 Aligned_cols=31 Identities=26% Similarity=0.317 Sum_probs=24.6
Q ss_pred EEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491 8 KIGINGFGRIGRLVARVALQRDDVELVAVNDP 39 (296)
Q Consensus 8 ~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~ 39 (296)
+|.|+|+|.||...+.++...+--+++.+ |.
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv~-d~ 201 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLGASVVIVV-DR 201 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCceEEEe-CC
Confidence 69999999999988777777776666665 54
No 202
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=90.41 E-value=0.43 Score=44.50 Aligned_cols=24 Identities=29% Similarity=0.351 Sum_probs=21.5
Q ss_pred eEEEEEecCHHHHHHHHHHHcCCC
Q 022491 7 IKIGINGFGRIGRLVARVALQRDD 30 (296)
Q Consensus 7 i~vgI~G~G~iG~~l~r~l~~~p~ 30 (296)
+||+|+|+|.+|..+...|.++..
T Consensus 8 mkI~IiGaGa~G~alA~~La~~g~ 31 (341)
T PRK12439 8 PKVVVLGGGSWGTTVASICARRGP 31 (341)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCC
Confidence 789999999999999999987653
No 203
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=90.38 E-value=0.34 Score=47.69 Aligned_cols=29 Identities=21% Similarity=0.390 Sum_probs=23.7
Q ss_pred eEEEEEecCHHHHHHHHHHHcCCCcEEEEE
Q 022491 7 IKIGINGFGRIGRLVARVALQRDDVELVAV 36 (296)
Q Consensus 7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i 36 (296)
.||||+|+|.+|..++..+..+. .+++..
T Consensus 6 ~kV~VIGaG~MG~gIA~~la~aG-~~V~l~ 34 (503)
T TIGR02279 6 VTVAVIGAGAMGAGIAQVAASAG-HQVLLY 34 (503)
T ss_pred cEEEEECcCHHHHHHHHHHHhCC-CeEEEE
Confidence 57999999999999999988764 555443
No 204
>PRK05442 malate dehydrogenase; Provisional
Probab=90.36 E-value=0.67 Score=43.03 Aligned_cols=27 Identities=22% Similarity=0.410 Sum_probs=21.7
Q ss_pred CCCCCeeEEEEEec-CHHHHHHHHHHHcCC
Q 022491 1 MAGDKKIKIGINGF-GRIGRLVARVALQRD 29 (296)
Q Consensus 1 m~~~m~i~vgI~G~-G~iG~~l~r~l~~~p 29 (296)
|-.+ .||+|+|+ |.+|..++-.|....
T Consensus 1 ~~~~--~KV~IiGaaG~VG~~~a~~l~~~~ 28 (326)
T PRK05442 1 MKAP--VRVAVTGAAGQIGYSLLFRIASGD 28 (326)
T ss_pred CCCC--cEEEEECCCcHHHHHHHHHHHhhh
Confidence 4444 79999999 999999988777543
No 205
>PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones. 3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process
Probab=90.27 E-value=1.4 Score=39.83 Aligned_cols=29 Identities=31% Similarity=0.383 Sum_probs=22.0
Q ss_pred EEec-CHHHHHHHHHHHcCCCcEEEEEecC
Q 022491 11 INGF-GRIGRLVARVALQRDDVELVAVNDP 39 (296)
Q Consensus 11 I~G~-G~iG~~l~r~l~~~p~~elv~i~~~ 39 (296)
|.|+ |++|+.+++.|.++++..-|.+.+.
T Consensus 2 VTGgsGflG~~iv~~Ll~~g~~~~Vr~~d~ 31 (280)
T PF01073_consen 2 VTGGSGFLGSHIVRQLLERGYIYEVRVLDR 31 (280)
T ss_pred EEcCCcHHHHHHHHHHHHCCCceEEEEccc
Confidence 6789 9999999999999886433344444
No 206
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=90.23 E-value=0.72 Score=42.72 Aligned_cols=23 Identities=17% Similarity=0.398 Sum_probs=20.3
Q ss_pred eEEEEEec-CHHHHHHHHHHHcCC
Q 022491 7 IKIGINGF-GRIGRLVARVALQRD 29 (296)
Q Consensus 7 i~vgI~G~-G~iG~~l~r~l~~~p 29 (296)
.||+|+|+ |.+|..++-.|....
T Consensus 3 ~KV~IiGa~G~VG~~~a~~l~~~~ 26 (322)
T cd01338 3 VRVAVTGAAGQIGYSLLFRIASGE 26 (322)
T ss_pred eEEEEECCCcHHHHHHHHHHHhcc
Confidence 69999999 999999999887654
No 207
>PLN02477 glutamate dehydrogenase
Probab=90.15 E-value=3.3 Score=39.73 Aligned_cols=32 Identities=31% Similarity=0.526 Sum_probs=29.3
Q ss_pred eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP 39 (296)
Q Consensus 7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~ 39 (296)
.||+|.|||.+|+.+++.|.+.. .+|++|+|.
T Consensus 207 ~~VaIqGfGnVG~~~A~~L~e~G-akVVaVsD~ 238 (410)
T PLN02477 207 QTFVIQGFGNVGSWAAQLIHEKG-GKIVAVSDI 238 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC-CEEEEEECC
Confidence 68999999999999999998864 999999986
No 208
>PRK06487 glycerate dehydrogenase; Provisional
Probab=90.03 E-value=0.4 Score=44.31 Aligned_cols=29 Identities=28% Similarity=0.438 Sum_probs=24.8
Q ss_pred eEEEEEecCHHHHHHHHHHHcCCCcEEEEE
Q 022491 7 IKIGINGFGRIGRLVARVALQRDDVELVAV 36 (296)
Q Consensus 7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i 36 (296)
.+|||+|+|.||+++++.+... .+++.+.
T Consensus 149 ktvgIiG~G~IG~~vA~~l~~f-gm~V~~~ 177 (317)
T PRK06487 149 KTLGLLGHGELGGAVARLAEAF-GMRVLIG 177 (317)
T ss_pred CEEEEECCCHHHHHHHHHHhhC-CCEEEEE
Confidence 5899999999999999999866 3777665
No 209
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=90.01 E-value=0.48 Score=46.69 Aligned_cols=31 Identities=26% Similarity=0.384 Sum_probs=24.6
Q ss_pred eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP 39 (296)
Q Consensus 7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~ 39 (296)
.||||+|+|.+|..++..+..+. ++++.. |+
T Consensus 8 ~~V~VIGaG~MG~gIA~~la~aG-~~V~l~-D~ 38 (507)
T PRK08268 8 ATVAVIGAGAMGAGIAQVAAQAG-HTVLLY-DA 38 (507)
T ss_pred CEEEEECCCHHHHHHHHHHHhCC-CeEEEE-eC
Confidence 57999999999999999988764 565543 44
No 210
>PRK14031 glutamate dehydrogenase; Provisional
Probab=89.99 E-value=2.1 Score=41.44 Aligned_cols=32 Identities=19% Similarity=0.279 Sum_probs=28.8
Q ss_pred eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP 39 (296)
Q Consensus 7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~ 39 (296)
.||+|-|+|.+|...++.|.+. ..+|++|+|.
T Consensus 229 ~rVaVQGfGNVG~~aA~~L~e~-GAkVVaVSD~ 260 (444)
T PRK14031 229 KVCLVSGSGNVAQYTAEKVLEL-GGKVVTMSDS 260 (444)
T ss_pred CEEEEECCCHHHHHHHHHHHHC-CCEEEEEECC
Confidence 6899999999999999999876 4999999883
No 211
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=89.98 E-value=0.4 Score=44.15 Aligned_cols=29 Identities=38% Similarity=0.524 Sum_probs=24.6
Q ss_pred eEEEEEecCHHHHHHHHHHHcCCCcEEEEE
Q 022491 7 IKIGINGFGRIGRLVARVALQRDDVELVAV 36 (296)
Q Consensus 7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i 36 (296)
.+|||+|+|.||+++++.+..- .+++.+.
T Consensus 146 ktvGIiG~G~IG~~vA~~~~~f-gm~V~~~ 174 (311)
T PRK08410 146 KKWGIIGLGTIGKRVAKIAQAF-GAKVVYY 174 (311)
T ss_pred CEEEEECCCHHHHHHHHHHhhc-CCEEEEE
Confidence 6899999999999999998765 4777665
No 212
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=89.78 E-value=0.79 Score=44.59 Aligned_cols=29 Identities=17% Similarity=0.316 Sum_probs=24.0
Q ss_pred eEEEEEecCHHHHHHHHHHHcCCCcEEEEE
Q 022491 7 IKIGINGFGRIGRLVARVALQRDDVELVAV 36 (296)
Q Consensus 7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i 36 (296)
.+|+|+|+|.+|+.+++.+.... ++++..
T Consensus 255 KtVgVIG~G~IGr~vA~rL~a~G-a~ViV~ 283 (476)
T PTZ00075 255 KTVVVCGYGDVGKGCAQALRGFG-ARVVVT 283 (476)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC-CEEEEE
Confidence 58999999999999999998764 565444
No 213
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=89.70 E-value=0.66 Score=43.82 Aligned_cols=31 Identities=23% Similarity=0.214 Sum_probs=24.9
Q ss_pred eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP 39 (296)
Q Consensus 7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~ 39 (296)
.||.|+|+|.+|+..++.+.... +++..+ ++
T Consensus 168 ~~VlViGaG~vG~~aa~~a~~lG-a~V~v~-d~ 198 (370)
T TIGR00518 168 GDVTIIGGGVVGTNAAKMANGLG-ATVTIL-DI 198 (370)
T ss_pred ceEEEEcCCHHHHHHHHHHHHCC-CeEEEE-EC
Confidence 47999999999999999999875 564444 44
No 214
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=89.61 E-value=0.42 Score=40.56 Aligned_cols=29 Identities=24% Similarity=0.500 Sum_probs=22.9
Q ss_pred eEEEEEecCHHHHHHHHHHHcCCCcEEEEE
Q 022491 7 IKIGINGFGRIGRLVARVALQRDDVELVAV 36 (296)
Q Consensus 7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i 36 (296)
|||+|+|.||+|.-++-.+.++. .+++++
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G-~~V~g~ 29 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKG-HQVIGV 29 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTT-SEEEEE
T ss_pred CEEEEECCCcchHHHHHHHHhCC-CEEEEE
Confidence 58999999999999998888875 777777
No 215
>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional
Probab=89.59 E-value=2.6 Score=40.86 Aligned_cols=103 Identities=15% Similarity=0.247 Sum_probs=59.3
Q ss_pred eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecCCCC--------hhhhhhcccccccC-CCCcCcceeeeCCceeEECCE
Q 022491 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFIS--------TDYMTYMFKYDSVH-GQWKHNELKVKDEKTLLFGEK 77 (296)
Q Consensus 7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~~~~--------~~~~a~~l~~~s~~-~~~~~~~v~~~~~~~l~~~~~ 77 (296)
.||+|=|+|.+|..+++.|.+. ..++++|+|.... .+.+..++.+.... +.+. .. .. . ..+
T Consensus 238 k~VaVqG~GnVg~~aa~~L~e~-GakVVavSD~~G~iy~~~Gld~~~l~~l~~~k~~~~g~i~-~~---~~---~-~~~- 307 (454)
T PTZ00079 238 KTVVVSGSGNVAQYAVEKLLQL-GAKVLTMSDSDGYIHEPNGFTKEKLAYLMDLKNVKRGRLK-EY---AK---H-SST- 307 (454)
T ss_pred CEEEEECCCHHHHHHHHHHHHC-CCEEEEEEcCCCcEECCCCCCHHHHHHHHHHHhhcCCcHH-hh---hh---c-cCC-
Confidence 6899999999999999999876 4999999987311 11111111111000 1000 00 00 0 000
Q ss_pred EEEEEecCCCCCCCcccCCCcEEEEccC-CccCHHHHHHHHHCCCCeEEe
Q 022491 78 PVAVFGFRNPEEIPWAKTGAEYVVESTG-VFTDKDKAAAHLKGGAKKVVI 126 (296)
Q Consensus 78 ~i~~~~~~d~~~i~~~~~~~DvV~~at~-~~~~~~~~~~~l~~G~k~vvi 126 (296)
.... +.+++ |. .++|+.+-|.- ...+.+.++.+++.+|| +|+
T Consensus 308 -a~~~---~~~~~-~~-~~cDI~iPcA~~n~I~~~~a~~l~~~~ak-~V~ 350 (454)
T PTZ00079 308 -AKYV---PGKKP-WE-VPCDIAFPCATQNEINLEDAKLLIKNGCK-LVA 350 (454)
T ss_pred -cEEe---CCcCc-cc-CCccEEEeccccccCCHHHHHHHHHcCCe-EEE
Confidence 0111 34454 74 68999998764 45566777878888996 444
No 216
>PLN02214 cinnamoyl-CoA reductase
Probab=89.54 E-value=2 Score=39.87 Aligned_cols=31 Identities=16% Similarity=0.322 Sum_probs=25.6
Q ss_pred eeEEEEEec-CHHHHHHHHHHHcCCCcEEEEEe
Q 022491 6 KIKIGINGF-GRIGRLVARVALQRDDVELVAVN 37 (296)
Q Consensus 6 ~i~vgI~G~-G~iG~~l~r~l~~~p~~elv~i~ 37 (296)
+++|-|.|+ |++|+.+++.|.++. .+++++.
T Consensus 10 ~~~vlVTGatGfIG~~l~~~L~~~G-~~V~~~~ 41 (342)
T PLN02214 10 GKTVCVTGAGGYIASWIVKILLERG-YTVKGTV 41 (342)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCc-CEEEEEe
Confidence 468999999 999999999998875 4666654
No 217
>TIGR00243 Dxr 1-deoxy-D-xylulose 5-phosphate reductoisomerase. 1-deoxy-D-xylulose 5-phosphate is converted to 2-C-methyl-D-erythritol 4-phosphate in the presence of NADPH. It is involved in the synthesis of isopentenyl diphosphate (IPP), a basic building block in isoprenoid, thiamin, and pyridoxal biosynthesis.
Probab=89.51 E-value=0.62 Score=43.99 Aligned_cols=107 Identities=19% Similarity=0.157 Sum_probs=60.4
Q ss_pred eEEEEEec-CHHHHHHHHHHHcCCC-cEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCc---eeE--EC--CE
Q 022491 7 IKIGINGF-GRIGRLVARVALQRDD-VELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEK---TLL--FG--EK 77 (296)
Q Consensus 7 i~vgI~G~-G~iG~~l~r~l~~~p~-~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~---~l~--~~--~~ 77 (296)
.||+|.|. |-||...+..+.+||+ ++++++... .+.+.+.... ..-.|++- ...+.. .+. .. +.
T Consensus 2 k~i~IlGsTGSIG~qtL~Vi~~~~~~f~v~~Laa~-~n~~~L~~q~--~~f~p~~v----~i~d~~~~~~l~~~l~~~~~ 74 (389)
T TIGR00243 2 KQIVILGSTGSIGKSTLDVVRHNPDHFQVVALSAG-KNVALMVEQI--LEFRPKFV----AIDDEASLKDLKTMLQQQGS 74 (389)
T ss_pred ceEEEEecChHHHHHHHHHHHhCccccEEEEEEcC-CCHHHHHHHH--HHcCCCEE----EEcCHHHHHHHHHHhhcCCC
Confidence 68999999 9999999999999986 999999876 5654333322 11112111 111100 000 00 10
Q ss_pred EEEEEecC-CCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCC
Q 022491 78 PVAVFGFR-NPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGA 121 (296)
Q Consensus 78 ~i~~~~~~-d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~ 121 (296)
.+.++... ...++ -...++|+|+.|.-.+.-..-.-.++++|.
T Consensus 75 ~~~v~~G~~~l~~l-~~~~~~D~vv~AivG~aGL~pt~~Ai~~gk 118 (389)
T TIGR00243 75 RTEVLVGEEGICEM-AALEDVDQVMNAIVGAAGLLPTLAAIRAGK 118 (389)
T ss_pred CcEEEECHHHHHHH-HcCCCCCEEEEhhhcHhhHHHHHHHHHCCC
Confidence 12233211 11111 012468999999877666666666778885
No 218
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=89.49 E-value=0.66 Score=37.26 Aligned_cols=31 Identities=19% Similarity=0.290 Sum_probs=23.3
Q ss_pred EEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491 8 KIGINGFGRIGRLVARVALQRDDVELVAVNDP 39 (296)
Q Consensus 8 ~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~ 39 (296)
||.|+|+|.+|.++++.|.... +.-+.+.|.
T Consensus 1 ~VliiG~GglGs~ia~~L~~~G-v~~i~ivD~ 31 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSG-VGKITLIDF 31 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCC-CCEEEEEcC
Confidence 5899999999999999998765 333334443
No 219
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=89.42 E-value=1.5 Score=40.10 Aligned_cols=31 Identities=26% Similarity=0.303 Sum_probs=24.3
Q ss_pred EEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491 9 IGINGFGRIGRLVARVALQRDDVELVAVNDP 39 (296)
Q Consensus 9 vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~ 39 (296)
|+|+|+|++|..++-.|...+-+.-+.+.|.
T Consensus 1 i~iiGaG~VG~~~a~~l~~~~~~~el~l~D~ 31 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIAKGLASELVLVDV 31 (300)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 5899999999999998888775554455555
No 220
>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit. ATP citrate lyases appear to form an outgroup.
Probab=89.36 E-value=1.3 Score=40.35 Aligned_cols=85 Identities=21% Similarity=0.200 Sum_probs=56.4
Q ss_pred eEEEEEec-CHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEecC
Q 022491 7 IKIGINGF-GRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFR 85 (296)
Q Consensus 7 i~vgI~G~-G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~~ 85 (296)
-||-|.|. |+.|..+++.+..-+.--+.+|+ + ... ++..++ ++.+.
T Consensus 7 ~~~~~~g~~~~~~~~~~~~~~~~g~~~v~~V~-p-~~~--------~~~v~G---------------------~~~y~-- 53 (286)
T TIGR01019 7 TKVIVQGITGSQGSFHTEQMLAYGTNIVGGVT-P-GKG--------GTTVLG---------------------LPVFD-- 53 (286)
T ss_pred CcEEEecCCcHHHHHHHHHHHhCCCCEEEEEC-C-CCC--------cceecC---------------------eeccC--
Confidence 58999999 99999999988776533333443 3 110 111111 11222
Q ss_pred CCCCCCcccC-CCcEEEEccCCccCHHHHHHHHHCCCCeEEe
Q 022491 86 NPEEIPWAKT-GAEYVVESTGVFTDKDKAAAHLKGGAKKVVI 126 (296)
Q Consensus 86 d~~~i~~~~~-~~DvV~~at~~~~~~~~~~~~l~~G~k~vvi 126 (296)
+.++++. . ++|+++.|.|.....+.++++.++|+|.++|
T Consensus 54 sv~dlp~--~~~~Dlavi~vpa~~v~~~l~e~~~~Gvk~avI 93 (286)
T TIGR01019 54 SVKEAVE--ETGANASVIFVPAPFAADAIFEAIDAGIELIVC 93 (286)
T ss_pred CHHHHhh--ccCCCEEEEecCHHHHHHHHHHHHHCCCCEEEE
Confidence 3344541 1 3799999999999899999999999987655
No 221
>PLN00106 malate dehydrogenase
Probab=89.32 E-value=2.1 Score=39.74 Aligned_cols=33 Identities=21% Similarity=0.266 Sum_probs=25.8
Q ss_pred eEEEEEec-CHHHHHHHHHHHcCCCcEEEEEecC
Q 022491 7 IKIGINGF-GRIGRLVARVALQRDDVELVAVNDP 39 (296)
Q Consensus 7 i~vgI~G~-G~iG~~l~r~l~~~p~~elv~i~~~ 39 (296)
.||+|+|+ |.+|..++..|..++...-..+.|.
T Consensus 19 ~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di 52 (323)
T PLN00106 19 FKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDI 52 (323)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEec
Confidence 68999999 9999999999987765543444454
No 222
>PRK06932 glycerate dehydrogenase; Provisional
Probab=89.32 E-value=0.49 Score=43.64 Aligned_cols=29 Identities=24% Similarity=0.404 Sum_probs=24.5
Q ss_pred eEEEEEecCHHHHHHHHHHHcCCCcEEEEE
Q 022491 7 IKIGINGFGRIGRLVARVALQRDDVELVAV 36 (296)
Q Consensus 7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i 36 (296)
.+|||+|+|.||+++++.+... .+++.+.
T Consensus 148 ktvgIiG~G~IG~~va~~l~~f-g~~V~~~ 176 (314)
T PRK06932 148 STLGVFGKGCLGTEVGRLAQAL-GMKVLYA 176 (314)
T ss_pred CEEEEECCCHHHHHHHHHHhcC-CCEEEEE
Confidence 6899999999999999998765 3777664
No 223
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=89.29 E-value=3.1 Score=34.24 Aligned_cols=29 Identities=21% Similarity=0.055 Sum_probs=23.6
Q ss_pred eEEEEEecCHHHHHHHHHHHcCCCcEEEEE
Q 022491 7 IKIGINGFGRIGRLVARVALQRDDVELVAV 36 (296)
Q Consensus 7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i 36 (296)
.||-|+|+|.+|...++.|.+.. .+++.|
T Consensus 14 ~~vlVvGGG~va~rka~~Ll~~g-a~V~VI 42 (157)
T PRK06719 14 KVVVIIGGGKIAYRKASGLKDTG-AFVTVV 42 (157)
T ss_pred CEEEEECCCHHHHHHHHHHHhCC-CEEEEE
Confidence 58999999999999999988754 455545
No 224
>PRK06199 ornithine cyclodeaminase; Validated
Probab=89.19 E-value=0.87 Score=43.18 Aligned_cols=34 Identities=12% Similarity=0.324 Sum_probs=30.1
Q ss_pred eeEEEEEecCHHHHHHHHHHHc-CCCcEEEEEecC
Q 022491 6 KIKIGINGFGRIGRLVARVALQ-RDDVELVAVNDP 39 (296)
Q Consensus 6 ~i~vgI~G~G~iG~~l~r~l~~-~p~~elv~i~~~ 39 (296)
..+++|+|+|..++..++++.. +|.++-+.|.++
T Consensus 155 a~~l~iiG~G~QA~~~l~a~~~v~~~i~~V~v~~r 189 (379)
T PRK06199 155 SKVVGLLGPGVMGKTILAAFMAVCPGIDTIKIKGR 189 (379)
T ss_pred CCEEEEECCcHHHHHHHHHHHHhcCCccEEEEECC
Confidence 3689999999999999999887 677999999887
No 225
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=89.16 E-value=3.8 Score=35.24 Aligned_cols=30 Identities=20% Similarity=0.276 Sum_probs=24.5
Q ss_pred eEEEEEecCHHHHHHHHHHHcCCCcEEEEEe
Q 022491 7 IKIGINGFGRIGRLVARVALQRDDVELVAVN 37 (296)
Q Consensus 7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~ 37 (296)
.||-|+|+|.+|...++.|.+.. .+++.|+
T Consensus 11 k~vLVIGgG~va~~ka~~Ll~~g-a~V~VIs 40 (202)
T PRK06718 11 KRVVIVGGGKVAGRRAITLLKYG-AHIVVIS 40 (202)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC-CeEEEEc
Confidence 58999999999999999988865 5655553
No 226
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=89.11 E-value=0.92 Score=44.27 Aligned_cols=31 Identities=23% Similarity=0.381 Sum_probs=25.0
Q ss_pred eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP 39 (296)
Q Consensus 7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~ 39 (296)
.+|||+|.|.+|..+++.|.++. .+| .+.++
T Consensus 2 ~~IgvIGLG~MG~~lA~nL~~~G-~~V-~v~dr 32 (470)
T PTZ00142 2 SDIGLIGLAVMGQNLALNIASRG-FKI-SVYNR 32 (470)
T ss_pred CEEEEEeEhHHHHHHHHHHHHCC-CeE-EEEeC
Confidence 47999999999999999999876 454 44455
No 227
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=88.97 E-value=0.53 Score=43.64 Aligned_cols=29 Identities=31% Similarity=0.460 Sum_probs=24.0
Q ss_pred eEEEEEecCHHHHHHHHHHH-cCCCcEEEEE
Q 022491 7 IKIGINGFGRIGRLVARVAL-QRDDVELVAV 36 (296)
Q Consensus 7 i~vgI~G~G~iG~~l~r~l~-~~p~~elv~i 36 (296)
.++||+|+|.||+++++.+. .. .+++++.
T Consensus 146 ktvGIiG~G~IG~~va~~l~~~f-gm~V~~~ 175 (323)
T PRK15409 146 KTLGIVGMGRIGMALAQRAHFGF-NMPILYN 175 (323)
T ss_pred CEEEEEcccHHHHHHHHHHHhcC-CCEEEEE
Confidence 68999999999999999987 54 4777643
No 228
>PLN02858 fructose-bisphosphate aldolase
Probab=88.73 E-value=0.81 Score=50.43 Aligned_cols=37 Identities=24% Similarity=0.366 Sum_probs=27.6
Q ss_pred CCCCCeeEEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491 1 MAGDKKIKIGINGFGRIGRLVARVALQRDDVELVAVNDP 39 (296)
Q Consensus 1 m~~~m~i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~ 39 (296)
|+..++.+||++|.|++|..+++.|.... +++.. .++
T Consensus 319 ~~~~~~~~IGfIGlG~MG~~mA~~L~~~G-~~V~v-~dr 355 (1378)
T PLN02858 319 MQAKPVKRIGFIGLGAMGFGMASHLLKSN-FSVCG-YDV 355 (1378)
T ss_pred ccccCCCeEEEECchHHHHHHHHHHHHCC-CEEEE-EeC
Confidence 44444478999999999999999998765 45543 444
No 229
>PRK08291 ectoine utilization protein EutC; Validated
Probab=88.69 E-value=0.72 Score=42.79 Aligned_cols=33 Identities=18% Similarity=0.126 Sum_probs=27.5
Q ss_pred eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP 39 (296)
Q Consensus 7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~ 39 (296)
.+++|+|+|..|+.+++.+.....++-+.|.++
T Consensus 133 ~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R 165 (330)
T PRK08291 133 SRAAVIGAGEQARLQLEALTLVRPIREVRVWAR 165 (330)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcC
Confidence 589999999999999998886445777888776
No 230
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=88.64 E-value=2.7 Score=40.49 Aligned_cols=92 Identities=23% Similarity=0.257 Sum_probs=53.5
Q ss_pred eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEecCC
Q 022491 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRN 86 (296)
Q Consensus 7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~~d 86 (296)
.+|.|+|+|.+|..+++.|.+.. .++. +.+. ...+.+...+ +. +. ..+ + .++....
T Consensus 6 k~v~iiG~g~~G~~~A~~l~~~G-~~V~-~~d~-~~~~~~~~~~--~~----l~------~~~--~-------~~~~~~~ 61 (450)
T PRK14106 6 KKVLVVGAGVSGLALAKFLKKLG-AKVI-LTDE-KEEDQLKEAL--EE----LG------ELG--I-------ELVLGEY 61 (450)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC-CEEE-EEeC-CchHHHHHHH--HH----HH------hcC--C-------EEEeCCc
Confidence 68999999889999999999876 4544 4454 2211110100 00 00 001 1 1121111
Q ss_pred CCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEee
Q 022491 87 PEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVIS 127 (296)
Q Consensus 87 ~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid 127 (296)
+++. ..+.|+||-+++.....+.+..+.+.|. .+++
T Consensus 62 ~~~~---~~~~d~vv~~~g~~~~~~~~~~a~~~~i--~~~~ 97 (450)
T PRK14106 62 PEEF---LEGVDLVVVSPGVPLDSPPVVQAHKKGI--EVIG 97 (450)
T ss_pred chhH---hhcCCEEEECCCCCCCCHHHHHHHHCCC--cEEe
Confidence 2222 2478999999998777777777778887 4553
No 231
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=88.46 E-value=0.61 Score=43.24 Aligned_cols=29 Identities=34% Similarity=0.574 Sum_probs=25.1
Q ss_pred eEEEEEecCHHHHHHHHHHHcCCCcEEEEE
Q 022491 7 IKIGINGFGRIGRLVARVALQRDDVELVAV 36 (296)
Q Consensus 7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i 36 (296)
.+|||+|+|.||+.+++.+.... +++.+.
T Consensus 143 kTvGIiG~G~IG~~va~~l~afg-m~v~~~ 171 (324)
T COG0111 143 KTVGIIGLGRIGRAVAKRLKAFG-MKVIGY 171 (324)
T ss_pred CEEEEECCCHHHHHHHHHHHhCC-CeEEEE
Confidence 58999999999999999988774 777666
No 232
>PRK06407 ornithine cyclodeaminase; Provisional
Probab=88.36 E-value=0.69 Score=42.44 Aligned_cols=33 Identities=12% Similarity=-0.043 Sum_probs=29.1
Q ss_pred eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP 39 (296)
Q Consensus 7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~ 39 (296)
.++||+|+|..|+..++++..-..++-+.|.++
T Consensus 118 ~~l~iiGaG~QA~~~~~a~~~v~~i~~v~v~~r 150 (301)
T PRK06407 118 ENFTIIGSGFQAETQLEGMASVYNPKRIRVYSR 150 (301)
T ss_pred cEEEEECCcHHHHHHHHHHHhcCCCCEEEEECC
Confidence 579999999999999999987666888888877
No 233
>PLN02928 oxidoreductase family protein
Probab=88.29 E-value=0.62 Score=43.62 Aligned_cols=30 Identities=30% Similarity=0.349 Sum_probs=25.7
Q ss_pred eEEEEEecCHHHHHHHHHHHcCCCcEEEEEe
Q 022491 7 IKIGINGFGRIGRLVARVALQRDDVELVAVN 37 (296)
Q Consensus 7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~ 37 (296)
.+|||+|+|.||+.+++.|.... +++.+.+
T Consensus 160 ktvGIiG~G~IG~~vA~~l~afG-~~V~~~d 189 (347)
T PLN02928 160 KTVFILGYGAIGIELAKRLRPFG-VKLLATR 189 (347)
T ss_pred CEEEEECCCHHHHHHHHHHhhCC-CEEEEEC
Confidence 58999999999999999998764 7887763
No 234
>PLN02166 dTDP-glucose 4,6-dehydratase
Probab=88.10 E-value=2.9 Score=40.40 Aligned_cols=30 Identities=20% Similarity=0.429 Sum_probs=25.9
Q ss_pred eEEEEEec-CHHHHHHHHHHHcCCCcEEEEEe
Q 022491 7 IKIGINGF-GRIGRLVARVALQRDDVELVAVN 37 (296)
Q Consensus 7 i~vgI~G~-G~iG~~l~r~l~~~p~~elv~i~ 37 (296)
+||-|.|+ |+||+.|++.|.++. .+|+++.
T Consensus 121 mkILVTGatGFIGs~Lv~~Ll~~G-~~V~~ld 151 (436)
T PLN02166 121 LRIVVTGGAGFVGSHLVDKLIGRG-DEVIVID 151 (436)
T ss_pred CEEEEECCccHHHHHHHHHHHHCC-CEEEEEe
Confidence 68999999 999999999998875 5777764
No 235
>KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism]
Probab=88.06 E-value=1.4 Score=41.03 Aligned_cols=24 Identities=29% Similarity=0.652 Sum_probs=21.8
Q ss_pred eEEEEEecCHHHHHHHHHHHcCCC
Q 022491 7 IKIGINGFGRIGRLVARVALQRDD 30 (296)
Q Consensus 7 i~vgI~G~G~iG~~l~r~l~~~p~ 30 (296)
.+|||+|+|.+|+.++..+..+..
T Consensus 53 l~IaIIGfGnmGqflAetli~aGh 76 (480)
T KOG2380|consen 53 LVIAIIGFGNMGQFLAETLIDAGH 76 (480)
T ss_pred eEEEEEecCcHHHHHHHHHHhcCc
Confidence 799999999999999999988763
No 236
>PRK07340 ornithine cyclodeaminase; Validated
Probab=87.92 E-value=0.57 Score=42.99 Aligned_cols=33 Identities=18% Similarity=-0.021 Sum_probs=26.8
Q ss_pred eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP 39 (296)
Q Consensus 7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~ 39 (296)
.+++|+|+|..|+..++.+..-..++-+.|.++
T Consensus 126 ~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r 158 (304)
T PRK07340 126 GDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGR 158 (304)
T ss_pred CEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcC
Confidence 689999999999999999875323566777776
No 237
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=87.79 E-value=1.2 Score=42.49 Aligned_cols=29 Identities=17% Similarity=0.300 Sum_probs=24.0
Q ss_pred eEEEEEecCHHHHHHHHHHHcCCCcEEEEE
Q 022491 7 IKIGINGFGRIGRLVARVALQRDDVELVAV 36 (296)
Q Consensus 7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i 36 (296)
.+|+|+|+|.+|+.+++.+.... ++++.+
T Consensus 196 k~VvViG~G~IG~~vA~~ak~~G-a~ViV~ 224 (406)
T TIGR00936 196 KTVVVAGYGWCGKGIAMRARGMG-ARVIVT 224 (406)
T ss_pred CEEEEECCCHHHHHHHHHHhhCc-CEEEEE
Confidence 58999999999999999988764 675554
No 238
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=87.77 E-value=3.5 Score=39.96 Aligned_cols=89 Identities=19% Similarity=0.185 Sum_probs=54.7
Q ss_pred eeEEEEEecCHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEecC
Q 022491 6 KIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFR 85 (296)
Q Consensus 6 ~i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~~ 85 (296)
.+||.|+|.|..|+.++|.|.++. .++ .++|....... . .. .+.+. .+ +.+....
T Consensus 7 ~~kv~V~GLG~sG~a~a~~L~~~G-~~v-~v~D~~~~~~~----~--~~-~~~~~-------~~---------i~~~~g~ 61 (448)
T COG0771 7 GKKVLVLGLGKSGLAAARFLLKLG-AEV-TVSDDRPAPEG----L--AA-QPLLL-------EG---------IEVELGS 61 (448)
T ss_pred CCEEEEEecccccHHHHHHHHHCC-CeE-EEEcCCCCccc----h--hh-hhhhc-------cC---------ceeecCc
Confidence 478999999999999999999876 444 44453122210 0 00 00000 00 1111111
Q ss_pred CCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCC
Q 022491 86 NPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAK 122 (296)
Q Consensus 86 d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k 122 (296)
.+. .+| .++|+|+.+=|-......+.++.++|++
T Consensus 62 ~~~-~~~--~~~d~vV~SPGi~~~~p~v~~A~~~gi~ 95 (448)
T COG0771 62 HDD-EDL--AEFDLVVKSPGIPPTHPLVEAAKAAGIE 95 (448)
T ss_pred cch-hcc--ccCCEEEECCCCCCCCHHHHHHHHcCCc
Confidence 222 334 5889999998887777888999999994
No 239
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=87.77 E-value=0.76 Score=38.55 Aligned_cols=22 Identities=32% Similarity=0.561 Sum_probs=19.8
Q ss_pred EEEEEecCHHHHHHHHHHHcCC
Q 022491 8 KIGINGFGRIGRLVARVALQRD 29 (296)
Q Consensus 8 ~vgI~G~G~iG~~l~r~l~~~p 29 (296)
||.|+|+|-+|.+++..|....
T Consensus 1 ~VlViG~GglGs~ia~~La~~G 22 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSG 22 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcC
Confidence 5899999999999999998765
No 240
>PRK06436 glycerate dehydrogenase; Provisional
Probab=87.74 E-value=0.73 Score=42.31 Aligned_cols=30 Identities=37% Similarity=0.525 Sum_probs=24.7
Q ss_pred eEEEEEecCHHHHHHHHHHHcCCCcEEEEEe
Q 022491 7 IKIGINGFGRIGRLVARVALQRDDVELVAVN 37 (296)
Q Consensus 7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~ 37 (296)
.+|||+|+|.||+++++.+..- .+++.+.+
T Consensus 123 ktvgIiG~G~IG~~vA~~l~af-G~~V~~~~ 152 (303)
T PRK06436 123 KSLGILGYGGIGRRVALLAKAF-GMNIYAYT 152 (303)
T ss_pred CEEEEECcCHHHHHHHHHHHHC-CCEEEEEC
Confidence 6899999999999999988754 47776654
No 241
>PRK07236 hypothetical protein; Provisional
Probab=87.63 E-value=0.8 Score=43.11 Aligned_cols=34 Identities=12% Similarity=-0.036 Sum_probs=27.1
Q ss_pred CCCCCeeEEEEEecCHHHHHHHHHHHcCCCcEEEE
Q 022491 1 MAGDKKIKIGINGFGRIGRLVARVALQRDDVELVA 35 (296)
Q Consensus 1 m~~~m~i~vgI~G~G~iG~~l~r~l~~~p~~elv~ 35 (296)
|-.+|+.+|.|+|+|.+|..++..|.++. ++++-
T Consensus 1 ~~~~~~~~ViIVGaG~aGl~~A~~L~~~G-~~v~v 34 (386)
T PRK07236 1 MTHMSGPRAVVIGGSLGGLFAALLLRRAG-WDVDV 34 (386)
T ss_pred CCCCCCCeEEEECCCHHHHHHHHHHHhCC-CCEEE
Confidence 66666689999999999999999998764 55433
No 242
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=87.52 E-value=1.4 Score=40.82 Aligned_cols=25 Identities=20% Similarity=0.268 Sum_probs=21.5
Q ss_pred eEEEEEec-CHHHHHHHHHHHcCCCc
Q 022491 7 IKIGINGF-GRIGRLVARVALQRDDV 31 (296)
Q Consensus 7 i~vgI~G~-G~iG~~l~r~l~~~p~~ 31 (296)
+||+|+|+ |.+|..++..|...+-+
T Consensus 1 ~KV~IiGAaG~VG~~~a~~L~~~~~~ 26 (323)
T cd00704 1 LHVLITGAAGQIGYNLLFLIASGELF 26 (323)
T ss_pred CEEEEECCCcHHHHHHHHHHHhCCcc
Confidence 48999999 99999999988876544
No 243
>PLN02206 UDP-glucuronate decarboxylase
Probab=87.46 E-value=3.3 Score=40.03 Aligned_cols=30 Identities=17% Similarity=0.390 Sum_probs=25.5
Q ss_pred eEEEEEec-CHHHHHHHHHHHcCCCcEEEEEe
Q 022491 7 IKIGINGF-GRIGRLVARVALQRDDVELVAVN 37 (296)
Q Consensus 7 i~vgI~G~-G~iG~~l~r~l~~~p~~elv~i~ 37 (296)
+||-|.|+ |++|+.|++.|.++. .+++++.
T Consensus 120 ~kILVTGatGfIGs~Lv~~Ll~~G-~~V~~ld 150 (442)
T PLN02206 120 LRVVVTGGAGFVGSHLVDRLMARG-DSVIVVD 150 (442)
T ss_pred CEEEEECcccHHHHHHHHHHHHCc-CEEEEEe
Confidence 68999999 999999999998875 5666663
No 244
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=87.31 E-value=1.8 Score=39.03 Aligned_cols=32 Identities=25% Similarity=0.219 Sum_probs=24.9
Q ss_pred eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP 39 (296)
Q Consensus 7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~ 39 (296)
.++.|+|+|-+|+.+++.|....-.++ .|.++
T Consensus 124 k~vlVlGaGg~a~ai~~aL~~~g~~~V-~v~~R 155 (278)
T PRK00258 124 KRILILGAGGAARAVILPLLDLGVAEI-TIVNR 155 (278)
T ss_pred CEEEEEcCcHHHHHHHHHHHHcCCCEE-EEEeC
Confidence 579999999999999999998763344 44444
No 245
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=87.25 E-value=0.88 Score=41.97 Aligned_cols=30 Identities=30% Similarity=0.347 Sum_probs=25.4
Q ss_pred eEEEEEecCHHHHHHHHHHHcCCCcEEEEEe
Q 022491 7 IKIGINGFGRIGRLVARVALQRDDVELVAVN 37 (296)
Q Consensus 7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~ 37 (296)
.+|||+|+|.||+++++.|.... +++.+..
T Consensus 137 ~tvgIvG~G~IG~~vA~~l~afG-~~V~~~~ 166 (312)
T PRK15469 137 FTIGILGAGVLGSKVAQSLQTWG-FPLRCWS 166 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC-CEEEEEe
Confidence 58999999999999999998764 7776653
No 246
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=87.19 E-value=2.1 Score=39.22 Aligned_cols=71 Identities=25% Similarity=0.257 Sum_probs=46.5
Q ss_pred eEEEEEec-CHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEecC
Q 022491 7 IKIGINGF-GRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFR 85 (296)
Q Consensus 7 i~vgI~G~-G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~~ 85 (296)
.+|+|+|. |.+|+-++++|.++. ..+...+....
T Consensus 160 k~V~vIG~s~ivG~PmA~~L~~~g-atVtv~~~~t~-------------------------------------------- 194 (301)
T PRK14194 160 KHAVVIGRSNIVGKPMAALLLQAH-CSVTVVHSRST-------------------------------------------- 194 (301)
T ss_pred CEEEEECCCCccHHHHHHHHHHCC-CEEEEECCCCC--------------------------------------------
Confidence 58999999 699999999998764 44433332200
Q ss_pred CCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCC
Q 022491 86 NPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAP 129 (296)
Q Consensus 86 d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~ 129 (296)
++.+. ..++|+||.|+|.... .-+..++.|+ +|||.+
T Consensus 195 ~l~e~---~~~ADIVIsavg~~~~--v~~~~ik~Ga--iVIDvg 231 (301)
T PRK14194 195 DAKAL---CRQADIVVAAVGRPRL--IDADWLKPGA--VVIDVG 231 (301)
T ss_pred CHHHH---HhcCCEEEEecCChhc--ccHhhccCCc--EEEEec
Confidence 11221 2468999999987532 2233478888 888875
No 247
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=87.15 E-value=1 Score=40.90 Aligned_cols=35 Identities=29% Similarity=0.470 Sum_probs=27.2
Q ss_pred CCCCCeeEEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491 1 MAGDKKIKIGINGFGRIGRLVARVALQRDDVELVAVNDP 39 (296)
Q Consensus 1 m~~~m~i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~ 39 (296)
|+.. .||||+|+|.+|..+++.+..+. .++... ++
T Consensus 1 ~~~~--~~V~vIG~G~mG~~iA~~l~~~G-~~V~~~-d~ 35 (295)
T PLN02545 1 MAEI--KKVGVVGAGQMGSGIAQLAAAAG-MDVWLL-DS 35 (295)
T ss_pred CCCc--CEEEEECCCHHHHHHHHHHHhcC-CeEEEE-eC
Confidence 5543 68999999999999999998875 565544 44
No 248
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=87.07 E-value=2.4 Score=39.52 Aligned_cols=32 Identities=16% Similarity=0.162 Sum_probs=25.3
Q ss_pred eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP 39 (296)
Q Consensus 7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~ 39 (296)
.||-|+|+|-+|+.+++.|.++.- .-+.|..+
T Consensus 175 k~vLvIGaGem~~l~a~~L~~~g~-~~i~v~nR 206 (338)
T PRK00676 175 ASLLFIGYSEINRKVAYYLQRQGY-SRITFCSR 206 (338)
T ss_pred CEEEEEcccHHHHHHHHHHHHcCC-CEEEEEcC
Confidence 589999999999999999999863 33444444
No 249
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=87.06 E-value=1.5 Score=40.70 Aligned_cols=24 Identities=17% Similarity=0.326 Sum_probs=21.2
Q ss_pred eEEEEEec-CHHHHHHHHHHHcCCC
Q 022491 7 IKIGINGF-GRIGRLVARVALQRDD 30 (296)
Q Consensus 7 i~vgI~G~-G~iG~~l~r~l~~~p~ 30 (296)
+||+|+|+ |.+|..++-.|...+-
T Consensus 4 ~KV~IIGa~G~VG~~~a~~l~~~~~ 28 (323)
T TIGR01759 4 VRVAVTGAAGQIGYSLLFRIASGEL 28 (323)
T ss_pred eEEEEECCCcHHHHHHHHHHHhCCc
Confidence 79999999 9999999998887653
No 250
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=87.01 E-value=1.7 Score=40.60 Aligned_cols=21 Identities=19% Similarity=0.533 Sum_probs=19.0
Q ss_pred EEEEEecCHHHHHHHHHHHcC
Q 022491 8 KIGINGFGRIGRLVARVALQR 28 (296)
Q Consensus 8 ~vgI~G~G~iG~~l~r~l~~~ 28 (296)
||+|+|+|..|..++..|...
T Consensus 1 kI~VIGaG~wGtALA~~la~n 21 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAEN 21 (342)
T ss_pred CEEEECcCHHHHHHHHHHHHc
Confidence 689999999999999999763
No 251
>PLN02494 adenosylhomocysteinase
Probab=86.89 E-value=1.6 Score=42.44 Aligned_cols=29 Identities=17% Similarity=0.280 Sum_probs=24.3
Q ss_pred eEEEEEecCHHHHHHHHHHHcCCCcEEEEE
Q 022491 7 IKIGINGFGRIGRLVARVALQRDDVELVAV 36 (296)
Q Consensus 7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i 36 (296)
.+|+|+|+|.+|+.+++.+.... ++++.+
T Consensus 255 KtVvViGyG~IGr~vA~~aka~G-a~VIV~ 283 (477)
T PLN02494 255 KVAVICGYGDVGKGCAAAMKAAG-ARVIVT 283 (477)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC-CEEEEE
Confidence 58999999999999999998764 676554
No 252
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=86.67 E-value=2.1 Score=35.52 Aligned_cols=87 Identities=22% Similarity=0.319 Sum_probs=45.3
Q ss_pred eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEecCC
Q 022491 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRN 86 (296)
Q Consensus 7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~~d 86 (296)
.++.|+|||.+|+.+++.|.... .+ |.|.+. ++-. .++ .. .+| . . +. .
T Consensus 24 k~vvV~GYG~vG~g~A~~lr~~G-a~-V~V~e~--DPi~---alq--A~-----------~dG--f-----~--v~---~ 71 (162)
T PF00670_consen 24 KRVVVIGYGKVGKGIARALRGLG-AR-VTVTEI--DPIR---ALQ--AA-----------MDG--F-----E--VM---T 71 (162)
T ss_dssp SEEEEE--SHHHHHHHHHHHHTT--E-EEEE-S--SHHH---HHH--HH-----------HTT--------E--EE----
T ss_pred CEEEEeCCCcccHHHHHHHhhCC-CE-EEEEEC--ChHH---HHH--hh-----------hcC--c-----E--ec---C
Confidence 57999999999999999998875 33 244443 4421 111 10 012 1 1 11 1
Q ss_pred CCCCCcccCCCcEEEEccCCcc--CHHHHHHHHHCCCCeEEeeCCCC
Q 022491 87 PEEIPWAKTGAEYVVESTGVFT--DKDKAAAHLKGGAKKVVISAPSK 131 (296)
Q Consensus 87 ~~~i~~~~~~~DvV~~at~~~~--~~~~~~~~l~~G~k~vvid~~~~ 131 (296)
.++. ....|++|.|||... ..+..+ .++.|+ ++.+..+.
T Consensus 72 ~~~a---~~~adi~vtaTG~~~vi~~e~~~-~mkdga--il~n~Gh~ 112 (162)
T PF00670_consen 72 LEEA---LRDADIFVTATGNKDVITGEHFR-QMKDGA--ILANAGHF 112 (162)
T ss_dssp HHHH---TTT-SEEEE-SSSSSSB-HHHHH-HS-TTE--EEEESSSS
T ss_pred HHHH---HhhCCEEEECCCCccccCHHHHH-HhcCCe--EEeccCcC
Confidence 2222 246899999999743 344443 457788 77766543
No 253
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=86.56 E-value=1.2 Score=43.38 Aligned_cols=30 Identities=20% Similarity=0.313 Sum_probs=24.1
Q ss_pred EEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491 8 KIGINGFGRIGRLVARVALQRDDVELVAVNDP 39 (296)
Q Consensus 8 ~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~ 39 (296)
+|||+|.|.+|..+++.|.++. .++. +.++
T Consensus 1 ~IG~IGLG~MG~~mA~nL~~~G-~~V~-v~dr 30 (467)
T TIGR00873 1 DIGVIGLAVMGSNLALNMADHG-FTVS-VYNR 30 (467)
T ss_pred CEEEEeeHHHHHHHHHHHHhcC-CeEE-EEeC
Confidence 4899999999999999999886 4554 4444
No 254
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=86.34 E-value=0.92 Score=42.08 Aligned_cols=29 Identities=34% Similarity=0.502 Sum_probs=24.1
Q ss_pred eEEEEEecCHHHHHHHHHHHcCCCcEEEEE
Q 022491 7 IKIGINGFGRIGRLVARVALQRDDVELVAV 36 (296)
Q Consensus 7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i 36 (296)
.++||+|.|+||+.++|.+..- .+++.+-
T Consensus 147 ktvGIiG~GrIG~avA~r~~~F-gm~v~y~ 175 (324)
T COG1052 147 KTLGIIGLGRIGQAVARRLKGF-GMKVLYY 175 (324)
T ss_pred CEEEEECCCHHHHHHHHHHhcC-CCEEEEE
Confidence 6899999999999999999843 4776655
No 255
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=86.21 E-value=1.2 Score=40.64 Aligned_cols=33 Identities=21% Similarity=0.358 Sum_probs=26.1
Q ss_pred CCCCCeeEEEEEecCHHHHHHHHHHHcCCCcEEEEE
Q 022491 1 MAGDKKIKIGINGFGRIGRLVARVALQRDDVELVAV 36 (296)
Q Consensus 1 m~~~m~i~vgI~G~G~iG~~l~r~l~~~p~~elv~i 36 (296)
|+.. .||+|+|+|.+|..++..|.+.. .++..+
T Consensus 1 ~~~~--~~I~vIGaG~mG~~iA~~l~~~g-~~V~~~ 33 (311)
T PRK06130 1 MNPI--QNLAIIGAGTMGSGIAALFARKG-LQVVLI 33 (311)
T ss_pred CCCc--cEEEEECCCHHHHHHHHHHHhCC-CeEEEE
Confidence 6653 68999999999999999998764 565554
No 256
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=86.10 E-value=4.5 Score=39.65 Aligned_cols=83 Identities=18% Similarity=0.138 Sum_probs=51.1
Q ss_pred eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEe-cC
Q 022491 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFG-FR 85 (296)
Q Consensus 7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~-~~ 85 (296)
.||.|+|+|.+|...++.|.... .++.. .|. . ...... + .+ . | +. ++. ..
T Consensus 13 ~~v~V~G~G~sG~aa~~~L~~~G-~~v~~-~D~-~-~~~~~~-l--~~-~------------g--~~-------~~~~~~ 63 (488)
T PRK03369 13 APVLVAGAGVTGRAVLAALTRFG-ARPTV-CDD-D-PDALRP-H--AE-R------------G--VA-------TVSTSD 63 (488)
T ss_pred CeEEEEcCCHHHHHHHHHHHHCC-CEEEE-EcC-C-HHHHHH-H--Hh-C------------C--CE-------EEcCcc
Confidence 48999999999999999888765 45444 564 2 211111 1 11 0 1 10 111 01
Q ss_pred CCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCC
Q 022491 86 NPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAK 122 (296)
Q Consensus 86 d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k 122 (296)
.++.+ .+.|+||.+.|...+......+.++|++
T Consensus 64 ~~~~l----~~~D~VV~SpGi~~~~p~~~~a~~~gi~ 96 (488)
T PRK03369 64 AVQQI----ADYALVVTSPGFRPTAPVLAAAAAAGVP 96 (488)
T ss_pred hHhHh----hcCCEEEECCCCCCCCHHHHHHHHCCCc
Confidence 12222 3679999999887777777788888883
No 257
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=86.05 E-value=1.6 Score=31.27 Aligned_cols=29 Identities=21% Similarity=0.248 Sum_probs=23.6
Q ss_pred EEEEEecCHHHHHHHHHHHcCCCcEEEEEe
Q 022491 8 KIGINGFGRIGRLVARVALQRDDVELVAVN 37 (296)
Q Consensus 8 ~vgI~G~G~iG~~l~r~l~~~p~~elv~i~ 37 (296)
||.|+|+|++|-|++..|.+.. .++.-|.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g-~~vtli~ 29 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELG-KEVTLIE 29 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT-SEEEEEE
T ss_pred CEEEECcCHHHHHHHHHHHHhC-cEEEEEe
Confidence 6899999999999999998764 5555443
No 258
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=86.03 E-value=0.77 Score=42.07 Aligned_cols=30 Identities=33% Similarity=0.326 Sum_probs=22.8
Q ss_pred EEEEEecCHHHHHHHHHHHcCCCcEEEEEec
Q 022491 8 KIGINGFGRIGRLVARVALQRDDVELVAVND 38 (296)
Q Consensus 8 ~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~ 38 (296)
||.|+|+|-+|.++++.|..-. +.-..+.|
T Consensus 1 kVLIvGaGGLGs~vA~~La~aG-Vg~ItlvD 30 (307)
T cd01486 1 KCLLLGAGTLGCNVARNLLGWG-VRHITFVD 30 (307)
T ss_pred CEEEECCCHHHHHHHHHHHHcC-CCeEEEEC
Confidence 6899999999999999998764 43333334
No 259
>COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]
Probab=86.02 E-value=1.7 Score=39.84 Aligned_cols=142 Identities=14% Similarity=0.149 Sum_probs=72.2
Q ss_pred EEEEEec-CHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEecCC
Q 022491 8 KIGINGF-GRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRN 86 (296)
Q Consensus 8 ~vgI~G~-G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~~d 86 (296)
+|-|.|. ||||...++.|.+.. .+++.+-.- .+... -.+. ...++|-.+. | .++. -
T Consensus 2 ~iLVtGGAGYIGSHtv~~Ll~~G-~~vvV~DNL-~~g~~-~~v~---~~~~~f~~gD--------i--~D~~-------~ 58 (329)
T COG1087 2 KVLVTGGAGYIGSHTVRQLLKTG-HEVVVLDNL-SNGHK-IALL---KLQFKFYEGD--------L--LDRA-------L 58 (329)
T ss_pred eEEEecCcchhHHHHHHHHHHCC-CeEEEEecC-CCCCH-HHhh---hccCceEEec--------c--ccHH-------H
Confidence 6788888 999999999999864 666655322 22110 0011 0001111011 1 0000 0
Q ss_pred CCCCCcccCCCcEEEEccCCccC------------------HHHHHHHHHCCCCeEEeeCCCCCCCeEEcccChhc-cCC
Q 022491 87 PEEIPWAKTGAEYVVESTGVFTD------------------KDKAAAHLKGGAKKVVISAPSKDAPMFVVGVNEKE-YKP 147 (296)
Q Consensus 87 ~~~i~~~~~~~DvV~~at~~~~~------------------~~~~~~~l~~G~k~vvid~~~~d~~~~v~gvn~~~-l~~ 147 (296)
.+++ +...++|.||...+.-.. ....+...+.|+|++|+|+++ .|||.+... +.+
T Consensus 59 L~~v-f~~~~idaViHFAa~~~VgESv~~Pl~Yy~NNv~gTl~Ll~am~~~gv~~~vFSStA-----avYG~p~~~PI~E 132 (329)
T COG1087 59 LTAV-FEENKIDAVVHFAASISVGESVQNPLKYYDNNVVGTLNLIEAMLQTGVKKFIFSSTA-----AVYGEPTTSPISE 132 (329)
T ss_pred HHHH-HHhcCCCEEEECccccccchhhhCHHHHHhhchHhHHHHHHHHHHhCCCEEEEecch-----hhcCCCCCcccCC
Confidence 1111 223467888876664222 234566778999999998765 467776331 221
Q ss_pred CCCeEEcCCcchhh---hHhHHHHHHhhcCeeEEE
Q 022491 148 ELDIVSNASCTTNC---LAPLAKVIHDKFGIVEGL 179 (296)
Q Consensus 148 ~~~iIs~p~C~~ta---l~~~l~~L~~~~gi~~~~ 179 (296)
... .+.-+.|... .=-+|+-+.+.+++..+.
T Consensus 133 ~~~-~~p~NPYG~sKlm~E~iL~d~~~a~~~~~v~ 166 (329)
T COG1087 133 TSP-LAPINPYGRSKLMSEEILRDAAKANPFKVVI 166 (329)
T ss_pred CCC-CCCCCcchhHHHHHHHHHHHHHHhCCCcEEE
Confidence 111 1122233333 344555666666755443
No 260
>COG0743 Dxr 1-deoxy-D-xylulose 5-phosphate reductoisomerase [Lipid metabolism]
Probab=85.97 E-value=1.3 Score=41.45 Aligned_cols=40 Identities=28% Similarity=0.362 Sum_probs=34.5
Q ss_pred eEEEEEec-CHHHHHHHHHHHcCCC-cEEEEEecCCCChhhhh
Q 022491 7 IKIGINGF-GRIGRLVARVALQRDD-VELVAVNDPFISTDYMT 47 (296)
Q Consensus 7 i~vgI~G~-G~iG~~l~r~l~~~p~-~elv~i~~~~~~~~~~a 47 (296)
.|+.|.|. |-||..-+..+.++|+ |+++++... .+.+.+.
T Consensus 2 k~i~iLGSTGSIG~qtLdVi~~~p~~f~vval~ag-~n~~~l~ 43 (385)
T COG0743 2 KKLTILGSTGSIGTQTLDVIRRNPDKFEVVALAAG-KNVELLA 43 (385)
T ss_pred ceEEEEecCCchhHHHHHHHHhCCCcEEEEEEecC-CcHHHHH
Confidence 68999999 9999999999999996 899999876 5655443
No 261
>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional
Probab=85.80 E-value=1.1 Score=41.31 Aligned_cols=31 Identities=29% Similarity=0.423 Sum_probs=26.6
Q ss_pred eEEEEEec-CHHHHHHHHHHHcCCCcEEEEEe
Q 022491 7 IKIGINGF-GRIGRLVARVALQRDDVELVAVN 37 (296)
Q Consensus 7 i~vgI~G~-G~iG~~l~r~l~~~p~~elv~i~ 37 (296)
+||-|.|+ |++|+.|++.|.++...+|.++.
T Consensus 2 ~~ilVtGatGfiGs~l~~~L~~~~~~~V~~~~ 33 (347)
T PRK11908 2 KKVLILGVNGFIGHHLSKRILETTDWEVYGMD 33 (347)
T ss_pred cEEEEECCCcHHHHHHHHHHHhCCCCeEEEEe
Confidence 58999999 99999999999876556787775
No 262
>PLN02306 hydroxypyruvate reductase
Probab=85.79 E-value=1.1 Score=42.59 Aligned_cols=31 Identities=32% Similarity=0.503 Sum_probs=25.1
Q ss_pred eEEEEEecCHHHHHHHHHHH-cCCCcEEEEEecC
Q 022491 7 IKIGINGFGRIGRLVARVAL-QRDDVELVAVNDP 39 (296)
Q Consensus 7 i~vgI~G~G~iG~~l~r~l~-~~p~~elv~i~~~ 39 (296)
.+|||+|+|.||+++++.+. .. .+++.+. |+
T Consensus 166 ktvGIiG~G~IG~~vA~~l~~~f-Gm~V~~~-d~ 197 (386)
T PLN02306 166 QTVGVIGAGRIGSAYARMMVEGF-KMNLIYY-DL 197 (386)
T ss_pred CEEEEECCCHHHHHHHHHHHhcC-CCEEEEE-CC
Confidence 68999999999999999985 44 5787665 44
No 263
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=85.73 E-value=1 Score=43.12 Aligned_cols=30 Identities=23% Similarity=0.432 Sum_probs=25.1
Q ss_pred eEEEEEecCHHHHHHHHHHHcCCCcEEEEEe
Q 022491 7 IKIGINGFGRIGRLVARVALQRDDVELVAVN 37 (296)
Q Consensus 7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~ 37 (296)
.+|||+|+|.||+.+++.+.... +++.+..
T Consensus 152 ktvGIiG~G~IG~~vA~~~~~fG-m~V~~~d 181 (409)
T PRK11790 152 KTLGIVGYGHIGTQLSVLAESLG-MRVYFYD 181 (409)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC-CEEEEEC
Confidence 58999999999999999998763 7776653
No 264
>PLN03139 formate dehydrogenase; Provisional
Probab=85.71 E-value=1.1 Score=42.67 Aligned_cols=31 Identities=32% Similarity=0.449 Sum_probs=25.5
Q ss_pred eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP 39 (296)
Q Consensus 7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~ 39 (296)
.+|||+|+|+||+.+++.|... .+++.+. ++
T Consensus 200 ktVGIVG~G~IG~~vA~~L~af-G~~V~~~-d~ 230 (386)
T PLN03139 200 KTVGTVGAGRIGRLLLQRLKPF-NCNLLYH-DR 230 (386)
T ss_pred CEEEEEeecHHHHHHHHHHHHC-CCEEEEE-CC
Confidence 5899999999999999999864 5777654 44
No 265
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=85.65 E-value=4.6 Score=34.84 Aligned_cols=85 Identities=16% Similarity=0.178 Sum_probs=49.4
Q ss_pred eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEecCC
Q 022491 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRN 86 (296)
Q Consensus 7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~~d 86 (296)
.||.|+|.|.+|..-++.|.+.. .+++.| ++....+ +..+ ... +.+.+.. ....
T Consensus 10 k~vlVvGgG~va~rk~~~Ll~~g-a~VtVv-sp~~~~~-l~~l---~~~------~~i~~~~--------------~~~~ 63 (205)
T TIGR01470 10 RAVLVVGGGDVALRKARLLLKAG-AQLRVI-AEELESE-LTLL---AEQ------GGITWLA--------------RCFD 63 (205)
T ss_pred CeEEEECcCHHHHHHHHHHHHCC-CEEEEE-cCCCCHH-HHHH---HHc------CCEEEEe--------------CCCC
Confidence 58999999999999999998865 454444 3412221 1111 110 1111111 1112
Q ss_pred CCCCCcccCCCcEEEEccCCc-cCHHHHHHHHHCCC
Q 022491 87 PEEIPWAKTGAEYVVESTGVF-TDKDKAAAHLKGGA 121 (296)
Q Consensus 87 ~~~i~~~~~~~DvV~~at~~~-~~~~~~~~~l~~G~ 121 (296)
++.+ .+.|+||-||+.. ........+.+.|+
T Consensus 64 ~~dl----~~~~lVi~at~d~~ln~~i~~~a~~~~i 95 (205)
T TIGR01470 64 ADIL----EGAFLVIAATDDEELNRRVAHAARARGV 95 (205)
T ss_pred HHHh----CCcEEEEECCCCHHHHHHHHHHHHHcCC
Confidence 2223 4789999999986 55666666667777
No 266
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=85.64 E-value=4.7 Score=36.63 Aligned_cols=31 Identities=32% Similarity=0.327 Sum_probs=23.4
Q ss_pred EEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491 8 KIGINGFGRIGRLVARVALQRDDVELVAVNDP 39 (296)
Q Consensus 8 ~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~ 39 (296)
++.|+|+|-+|...+.++.... ++.+.+.+.
T Consensus 147 ~vlV~G~G~vG~~a~q~ak~~G-~~~v~~~~~ 177 (308)
T TIGR01202 147 PDLIVGHGTLGRLLARLTKAAG-GSPPAVWET 177 (308)
T ss_pred cEEEECCCHHHHHHHHHHHHcC-CceEEEeCC
Confidence 6899999999999998877765 554444444
No 267
>COG3268 Uncharacterized conserved protein [Function unknown]
Probab=85.49 E-value=1.1 Score=41.57 Aligned_cols=95 Identities=19% Similarity=0.189 Sum_probs=54.9
Q ss_pred CCCCCeeEEEEEec-CHHHHHHHHHHHcCCCcEEEEEecCCCC-hhhhhhcccccccCCCCcCcceeeeCCceeEECCEE
Q 022491 1 MAGDKKIKIGINGF-GRIGRLVARVALQRDDVELVAVNDPFIS-TDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKP 78 (296)
Q Consensus 1 m~~~m~i~vgI~G~-G~iG~~l~r~l~~~p~~elv~i~~~~~~-~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~ 78 (296)
|+.+|-.-+-|.|+ ||+|+.+++.|..+.. .. ++..++.. .+.+...| +.....|+
T Consensus 1 ~~~e~e~d~iiYGAtGy~G~lvae~l~~~g~-~~-aLAgRs~~kl~~l~~~L--G~~~~~~p------------------ 58 (382)
T COG3268 1 MPMEREYDIIIYGATGYAGGLVAEYLAREGL-TA-ALAGRSSAKLDALRASL--GPEAAVFP------------------ 58 (382)
T ss_pred CCCCcceeEEEEccccchhHHHHHHHHHcCC-ch-hhccCCHHHHHHHHHhc--CccccccC------------------
Confidence 55565577899999 9999999999987642 11 55555111 11111111 12122222
Q ss_pred EEEEecCCCCCCCcccCCCcEEEEccCCccCH--HHHHHHHHCCCC
Q 022491 79 VAVFGFRNPEEIPWAKTGAEYVVESTGVFTDK--DKAAAHLKGGAK 122 (296)
Q Consensus 79 i~~~~~~d~~~i~~~~~~~DvV~~at~~~~~~--~~~~~~l~~G~k 122 (296)
+. +|..++-...+++||+.|.|.++.. ..+...+.+|..
T Consensus 59 --~~---~p~~~~~~~~~~~VVlncvGPyt~~g~plv~aC~~~GTd 99 (382)
T COG3268 59 --LG---VPAALEAMASRTQVVLNCVGPYTRYGEPLVAACAAAGTD 99 (382)
T ss_pred --CC---CHHHHHHHHhcceEEEeccccccccccHHHHHHHHhCCC
Confidence 00 1221111146899999999987653 466777778873
No 268
>PRK06823 ornithine cyclodeaminase; Validated
Probab=85.47 E-value=2.7 Score=38.86 Aligned_cols=33 Identities=24% Similarity=0.159 Sum_probs=29.3
Q ss_pred eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP 39 (296)
Q Consensus 7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~ 39 (296)
.+++|+|+|..++..++++..-..++-+.|.++
T Consensus 129 ~~l~iiG~G~qA~~~~~a~~~v~~i~~v~v~~r 161 (315)
T PRK06823 129 SAIGIVGTGIQARMQLMYLKNVTDCRQLWVWGR 161 (315)
T ss_pred CEEEEECCcHHHHHHHHHHHhcCCCCEEEEECC
Confidence 689999999999999999887666888888887
No 269
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=85.02 E-value=1.4 Score=37.05 Aligned_cols=28 Identities=25% Similarity=0.399 Sum_probs=22.5
Q ss_pred EEEEEecCHHHHHHHHHHHcCCCcEEEEE
Q 022491 8 KIGINGFGRIGRLVARVALQRDDVELVAV 36 (296)
Q Consensus 8 ~vgI~G~G~iG~~l~r~l~~~p~~elv~i 36 (296)
||||+|+|.+|+.++..+..+. +++..+
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G-~~V~l~ 28 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAG-YEVTLY 28 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTT-SEEEEE
T ss_pred CEEEEcCCHHHHHHHHHHHhCC-CcEEEE
Confidence 6999999999999999988874 665554
No 270
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=84.99 E-value=1.4 Score=39.32 Aligned_cols=32 Identities=22% Similarity=0.453 Sum_probs=29.2
Q ss_pred eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP 39 (296)
Q Consensus 7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~ 39 (296)
.||+|-|||.+|+.+++.|.+.. .++++|+|.
T Consensus 39 ~~vaIqGfGnVG~~~a~~L~e~G-akvvaVsD~ 70 (254)
T cd05313 39 KRVAISGSGNVAQYAAEKLLELG-AKVVTLSDS 70 (254)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC-CEEEEEECC
Confidence 69999999999999999998864 999999984
No 271
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=84.77 E-value=1.3 Score=43.33 Aligned_cols=31 Identities=32% Similarity=0.433 Sum_probs=26.6
Q ss_pred eEEEEEecCHHHHHHHHHHHcCC-CcEEEEEe
Q 022491 7 IKIGINGFGRIGRLVARVALQRD-DVELVAVN 37 (296)
Q Consensus 7 i~vgI~G~G~iG~~l~r~l~~~p-~~elv~i~ 37 (296)
|||+|+|+||+|.-++-.|.++. .++++++-
T Consensus 2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD 33 (473)
T PLN02353 2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVVD 33 (473)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCeEEEEE
Confidence 68999999999999998888764 68888874
No 272
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=84.69 E-value=2.1 Score=41.43 Aligned_cols=22 Identities=18% Similarity=0.258 Sum_probs=20.5
Q ss_pred eEEEEEec-CHHHHHHHHHHHcC
Q 022491 7 IKIGINGF-GRIGRLVARVALQR 28 (296)
Q Consensus 7 i~vgI~G~-G~iG~~l~r~l~~~ 28 (296)
+||+|+|+ |.+|..++-.|...
T Consensus 101 ~KV~IIGAaG~VG~~~A~~L~~~ 123 (444)
T PLN00112 101 INVAVSGAAGMISNHLLFKLASG 123 (444)
T ss_pred eEEEEECCCcHHHHHHHHHHHhc
Confidence 89999999 99999999988876
No 273
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=84.59 E-value=1 Score=39.14 Aligned_cols=23 Identities=30% Similarity=0.501 Sum_probs=20.9
Q ss_pred eEEEEEecCHHHHHHHHHHHcCC
Q 022491 7 IKIGINGFGRIGRLVARVALQRD 29 (296)
Q Consensus 7 i~vgI~G~G~iG~~l~r~l~~~p 29 (296)
.||.|+|+|-+|.+++..|....
T Consensus 29 ~~V~ViG~GglGs~ia~~La~~G 51 (212)
T PRK08644 29 AKVGIAGAGGLGSNIAVALARSG 51 (212)
T ss_pred CCEEEECcCHHHHHHHHHHHHcC
Confidence 58999999999999999998765
No 274
>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]
Probab=84.35 E-value=6.2 Score=37.63 Aligned_cols=32 Identities=28% Similarity=0.594 Sum_probs=29.2
Q ss_pred eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP 39 (296)
Q Consensus 7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~ 39 (296)
.||+|=|+|.+|+.+++.|.+. ..+|+++.|.
T Consensus 208 ~rVaVQG~GNVg~~aa~~l~~~-GAkvva~sds 239 (411)
T COG0334 208 ARVAVQGFGNVGQYAAEKLHEL-GAKVVAVSDS 239 (411)
T ss_pred CEEEEECccHHHHHHHHHHHHc-CCEEEEEEcC
Confidence 6899999999999999999876 6999999876
No 275
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=84.34 E-value=3 Score=38.52 Aligned_cols=34 Identities=12% Similarity=0.209 Sum_probs=24.9
Q ss_pred CCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeC
Q 022491 95 TGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISA 128 (296)
Q Consensus 95 ~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~ 128 (296)
...|++|+|++...+.+.+-.+++.|-..+++..
T Consensus 241 ~~~d~~~dCsG~~~~~~aai~a~r~gGt~vlvg~ 274 (354)
T KOG0024|consen 241 KQPDVTFDCSGAEVTIRAAIKATRSGGTVVLVGM 274 (354)
T ss_pred cCCCeEEEccCchHHHHHHHHHhccCCEEEEecc
Confidence 3489999999999988887777776543344433
No 276
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=84.14 E-value=1.5 Score=37.20 Aligned_cols=29 Identities=21% Similarity=0.231 Sum_probs=23.9
Q ss_pred eEEEEEec-CHHHHHHHHHHHcCCCcEEEEE
Q 022491 7 IKIGINGF-GRIGRLVARVALQRDDVELVAV 36 (296)
Q Consensus 7 i~vgI~G~-G~iG~~l~r~l~~~p~~elv~i 36 (296)
.++.|+|+ |.+|+.+++.|.++. .++..+
T Consensus 29 ~~vlVlGgtG~iG~~~a~~l~~~g-~~V~l~ 58 (194)
T cd01078 29 KTAVVLGGTGPVGQRAAVLLAREG-ARVVLV 58 (194)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCC-CEEEEE
Confidence 58999998 999999999998775 465544
No 277
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=84.09 E-value=2.1 Score=44.01 Aligned_cols=30 Identities=23% Similarity=0.305 Sum_probs=23.1
Q ss_pred eEEEEEecCHHHHHHHHHHHcCCCcEEEEE
Q 022491 7 IKIGINGFGRIGRLVARVALQRDDVELVAV 36 (296)
Q Consensus 7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i 36 (296)
.||+|+|+|.+|..++..+.....++++.+
T Consensus 310 ~~v~ViGaG~mG~giA~~~a~~~G~~V~l~ 339 (708)
T PRK11154 310 NKVGVLGGGLMGGGIAYVTATKAGLPVRIK 339 (708)
T ss_pred cEEEEECCchhhHHHHHHHHHHcCCeEEEE
Confidence 579999999999999998873334555443
No 278
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=83.93 E-value=1.2 Score=42.71 Aligned_cols=32 Identities=19% Similarity=0.238 Sum_probs=25.2
Q ss_pred eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP 39 (296)
Q Consensus 7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~ 39 (296)
.||.|+|+|-+|+.+++.|..++ +.-+.|..+
T Consensus 182 kkvlviGaG~~a~~va~~L~~~g-~~~I~V~nR 213 (414)
T PRK13940 182 KNVLIIGAGQTGELLFRHVTALA-PKQIMLANR 213 (414)
T ss_pred CEEEEEcCcHHHHHHHHHHHHcC-CCEEEEECC
Confidence 58999999999999999999876 333445444
No 279
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=83.67 E-value=4.8 Score=38.50 Aligned_cols=82 Identities=21% Similarity=0.275 Sum_probs=50.0
Q ss_pred eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEecCC
Q 022491 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRN 86 (296)
Q Consensus 7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~~d 86 (296)
.||.|+|.|.+|+.+++.|.+.. .++. ..|...+. +. . .+.+. . . .. .+
T Consensus 4 ~~i~iiGlG~~G~slA~~l~~~G-~~V~-g~D~~~~~-----~~---~-~~~~~-------~---~--------~~--~~ 52 (418)
T PRK00683 4 QRVVVLGLGVTGKSIARFLAQKG-VYVI-GVDKSLEA-----LQ---S-CPYIH-------E---R--------YL--EN 52 (418)
T ss_pred CeEEEEEECHHHHHHHHHHHHCC-CEEE-EEeCCccc-----cc---h-hHHHh-------h---h--------hc--CC
Confidence 58999999999999999998876 3443 34441111 00 0 00000 0 0 00 01
Q ss_pred CCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCC
Q 022491 87 PEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAK 122 (296)
Q Consensus 87 ~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k 122 (296)
++.+ ..+.|++|-+.|.......+..++++|++
T Consensus 53 ~~~~---~~~~dlvV~s~gi~~~~~~l~~A~~~g~~ 85 (418)
T PRK00683 53 AEEF---PEQVDLVVRSPGIKKEHPWVQAAIASHIP 85 (418)
T ss_pred cHHH---hcCCCEEEECCCCCCCcHHHHHHHHCCCc
Confidence 2222 13679999988877667888899999984
No 280
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=83.48 E-value=4.1 Score=37.43 Aligned_cols=23 Identities=35% Similarity=0.426 Sum_probs=20.9
Q ss_pred eEEEEEecCHHHHHHHHHHHcCC
Q 022491 7 IKIGINGFGRIGRLVARVALQRD 29 (296)
Q Consensus 7 i~vgI~G~G~iG~~l~r~l~~~p 29 (296)
+||.|+|+|.+|..+.-.|.+.+
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g 23 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAG 23 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhCC
Confidence 48999999999999999888877
No 281
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=83.44 E-value=2.7 Score=38.17 Aligned_cols=32 Identities=28% Similarity=0.274 Sum_probs=24.9
Q ss_pred eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP 39 (296)
Q Consensus 7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~ 39 (296)
.||.|+|+|-+|+.++..|.... +.-+.|.++
T Consensus 128 k~vlIlGaGGaaraia~aL~~~G-~~~I~I~nR 159 (284)
T PRK12549 128 ERVVQLGAGGAGAAVAHALLTLG-VERLTIFDV 159 (284)
T ss_pred CEEEEECCcHHHHHHHHHHHHcC-CCEEEEECC
Confidence 47999999999999999998765 433555555
No 282
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=83.34 E-value=3.2 Score=41.50 Aligned_cols=30 Identities=20% Similarity=0.159 Sum_probs=24.8
Q ss_pred eEEEEEec-CHHHHHHHHHHHcCCCcEEEEEe
Q 022491 7 IKIGINGF-GRIGRLVARVALQRDDVELVAVN 37 (296)
Q Consensus 7 i~vgI~G~-G~iG~~l~r~l~~~p~~elv~i~ 37 (296)
.+|.|.|+ |.+|+.+++.|.++. .+|+++.
T Consensus 81 KvVLVTGATGgIG~aLAr~LLk~G-~~Vval~ 111 (576)
T PLN03209 81 DLAFVAGATGKVGSRTVRELLKLG-FRVRAGV 111 (576)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCC-CeEEEEe
Confidence 46899999 999999999998875 5666653
No 283
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=83.24 E-value=6.4 Score=36.28 Aligned_cols=30 Identities=23% Similarity=0.402 Sum_probs=22.3
Q ss_pred eEEEEEecCHHHHHHHHHHHcCCCcEEEEE
Q 022491 7 IKIGINGFGRIGRLVARVALQRDDVELVAV 36 (296)
Q Consensus 7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i 36 (296)
-+|.|+|+|-+|...+.++....--+++++
T Consensus 171 ~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~ 200 (343)
T PRK09880 171 KRVFVSGVGPIGCLIVAAVKTLGAAEIVCA 200 (343)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCcEEEEE
Confidence 369999999999999988877642244444
No 284
>PRK06141 ornithine cyclodeaminase; Validated
Probab=82.81 E-value=2 Score=39.52 Aligned_cols=32 Identities=25% Similarity=0.333 Sum_probs=25.4
Q ss_pred eEEEEEecCHHHHHHHHHHHc-CCCcEEEEEecC
Q 022491 7 IKIGINGFGRIGRLVARVALQ-RDDVELVAVNDP 39 (296)
Q Consensus 7 i~vgI~G~G~iG~~l~r~l~~-~p~~elv~i~~~ 39 (296)
.+|+|+|+|.+|+..++.+.. ++ ++-+.|.++
T Consensus 126 ~~v~iiG~G~~a~~~~~al~~~~~-~~~V~V~~R 158 (314)
T PRK06141 126 SRLLVVGTGRLASLLALAHASVRP-IKQVRVWGR 158 (314)
T ss_pred ceEEEECCcHHHHHHHHHHHhcCC-CCEEEEEcC
Confidence 689999999999999987665 55 555666666
No 285
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=82.80 E-value=1.6 Score=38.14 Aligned_cols=101 Identities=25% Similarity=0.240 Sum_probs=53.9
Q ss_pred eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEecCC
Q 022491 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRN 86 (296)
Q Consensus 7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~~d 86 (296)
|++.|+|+|++|+.+++.|.+.. -+++.|-.. .+...+.+ .+.+. ..+ +..++. ...-
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g-~~Vv~Id~d---~~~~~~~~--~~~~~----~~~-------v~gd~t-----~~~~ 58 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEG-HNVVLIDRD---EERVEEFL--ADELD----THV-------VIGDAT-----DEDV 58 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCC-CceEEEEcC---HHHHHHHh--hhhcc----eEE-------EEecCC-----CHHH
Confidence 47999999999999999999875 455555322 22111101 10010 000 100000 0001
Q ss_pred CCCCCcccCCCcEEEEccCCccCHHH-HHHHHH-CCCCeEEeeCCCC
Q 022491 87 PEEIPWAKTGAEYVVESTGVFTDKDK-AAAHLK-GGAKKVVISAPSK 131 (296)
Q Consensus 87 ~~~i~~~~~~~DvV~~at~~~~~~~~-~~~~l~-~G~k~vvid~~~~ 131 (296)
+++.. ..++|+++-+|+.....-. +.-+++ .|.+.++.-..++
T Consensus 59 L~~ag--i~~aD~vva~t~~d~~N~i~~~la~~~~gv~~viar~~~~ 103 (225)
T COG0569 59 LEEAG--IDDADAVVAATGNDEVNSVLALLALKEFGVPRVIARARNP 103 (225)
T ss_pred HHhcC--CCcCCEEEEeeCCCHHHHHHHHHHHHhcCCCcEEEEecCH
Confidence 12222 3578999999999554433 333334 5888777765543
No 286
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=82.66 E-value=1.9 Score=41.41 Aligned_cols=30 Identities=27% Similarity=0.410 Sum_probs=25.3
Q ss_pred eEEEEEecCHHHHHHHHHHHcCCCcEEEEEe
Q 022491 7 IKIGINGFGRIGRLVARVALQRDDVELVAVN 37 (296)
Q Consensus 7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~ 37 (296)
+||+|+|.|++|..++..|.++. .++.++.
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~G-~~V~~~D 33 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASRQ-KQVIGVD 33 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhCC-CEEEEEe
Confidence 68999999999999999998875 6666653
No 287
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=82.66 E-value=2.6 Score=36.22 Aligned_cols=30 Identities=23% Similarity=0.150 Sum_probs=23.6
Q ss_pred eEEEEEecCHHHHHHHHHHHcCCCcEEEEE
Q 022491 7 IKIGINGFGRIGRLVARVALQRDDVELVAV 36 (296)
Q Consensus 7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i 36 (296)
.||.|+|+|-+|.++++.|....--++..+
T Consensus 22 ~~VlviG~GglGs~ia~~La~~Gv~~i~lv 51 (202)
T TIGR02356 22 SHVLIIGAGGLGSPAALYLAGAGVGTIVIV 51 (202)
T ss_pred CCEEEECCCHHHHHHHHHHHHcCCCeEEEe
Confidence 589999999999999999988752244333
No 288
>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []. The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.
Probab=82.61 E-value=1.4 Score=40.53 Aligned_cols=94 Identities=23% Similarity=0.238 Sum_probs=44.8
Q ss_pred eEEEEEecCHHHHHHHHHHHc-CCCcEEEEEecCCCC-hhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEec
Q 022491 7 IKIGINGFGRIGRLVARVALQ-RDDVELVAVNDPFIS-TDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGF 84 (296)
Q Consensus 7 i~vgI~G~G~iG~~l~r~l~~-~p~~elv~i~~~~~~-~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~ 84 (296)
.+++|+|+|..++..++++.. +| ++-+.|.++..+ .+.++..+ .. + . + .+...
T Consensus 129 ~~l~viGaG~QA~~~~~a~~~~~~-i~~v~v~~r~~~~~~~~~~~~--~~-~---~-----------~-----~v~~~-- 183 (313)
T PF02423_consen 129 RTLGVIGAGVQARWHLRALAAVRP-IKEVRVYSRSPERAEAFAARL--RD-L---G-----------V-----PVVAV-- 183 (313)
T ss_dssp -EEEEE--SHHHHHHHHHHHHHS---SEEEEE-SSHHHHHHHHHHH--HC-C---C-----------T-----CEEEE--
T ss_pred ceEEEECCCHHHHHHHHHHHHhCC-ceEEEEEccChhHHHHHHHhh--cc-c---c-----------c-----cceec--
Confidence 589999999999999999876 66 888888887222 12222211 11 1 0 1 11111
Q ss_pred CCCCCCCcccCCCcEEEEccCCccCHH-HHHHHHHCCCCeEEeeCCC
Q 022491 85 RNPEEIPWAKTGAEYVVESTGVFTDKD-KAAAHLKGGAKKVVISAPS 130 (296)
Q Consensus 85 ~d~~~i~~~~~~~DvV~~at~~~~~~~-~~~~~l~~G~k~vvid~~~ 130 (296)
.++++. ..++|+|+.||++..... .-...++.|+ .|....+
T Consensus 184 ~~~~~a---v~~aDii~taT~s~~~~P~~~~~~l~~g~--hi~~iGs 225 (313)
T PF02423_consen 184 DSAEEA---VRGADIIVTATPSTTPAPVFDAEWLKPGT--HINAIGS 225 (313)
T ss_dssp SSHHHH---HTTSSEEEE----SSEEESB-GGGS-TT---EEEE-S-
T ss_pred cchhhh---cccCCEEEEccCCCCCCccccHHHcCCCc--EEEEecC
Confidence 244443 368999999999876111 1123456677 5555444
No 289
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=82.51 E-value=5.7 Score=36.16 Aligned_cols=73 Identities=19% Similarity=0.271 Sum_probs=46.5
Q ss_pred eEEEEEecCH-HHHHHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEecC
Q 022491 7 IKIGINGFGR-IGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFR 85 (296)
Q Consensus 7 i~vgI~G~G~-iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~~ 85 (296)
.+|.|+|.|. +|+-++.+|.++. ..+..++++ ..
T Consensus 159 k~vvVIGrs~~VG~pla~lL~~~g-atVtv~~s~--t~------------------------------------------ 193 (286)
T PRK14175 159 KNAVVIGRSHIVGQPVSKLLLQKN-ASVTILHSR--SK------------------------------------------ 193 (286)
T ss_pred CEEEEECCCchhHHHHHHHHHHCC-CeEEEEeCC--ch------------------------------------------
Confidence 5899999944 9999999988763 444443322 00
Q ss_pred CCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCCCC
Q 022491 86 NPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSK 131 (296)
Q Consensus 86 d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~~~ 131 (296)
+..+. ..++|+||.|+|...- ..+..++.|+ +|||.+..
T Consensus 194 ~l~~~---~~~ADIVIsAvg~p~~--i~~~~vk~ga--vVIDvGi~ 232 (286)
T PRK14175 194 DMASY---LKDADVIVSAVGKPGL--VTKDVVKEGA--VIIDVGNT 232 (286)
T ss_pred hHHHH---HhhCCEEEECCCCCcc--cCHHHcCCCc--EEEEcCCC
Confidence 01111 2478999999987421 2234567787 89987553
No 290
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=82.32 E-value=2.5 Score=36.27 Aligned_cols=35 Identities=17% Similarity=0.134 Sum_probs=27.0
Q ss_pred CCCCCeeEEEEEec-CHHHHHHHHHHHcCCCcEEEEE
Q 022491 1 MAGDKKIKIGINGF-GRIGRLVARVALQRDDVELVAV 36 (296)
Q Consensus 1 m~~~m~i~vgI~G~-G~iG~~l~r~l~~~p~~elv~i 36 (296)
|..+++.++-|.|+ |.+|+++++.|.++.. +++.+
T Consensus 1 ~~~~~~~~vlItGasg~iG~~l~~~l~~~g~-~v~~~ 36 (249)
T PRK12825 1 MGSLMGRVALVTGAARGLGRAIALRLARAGA-DVVVH 36 (249)
T ss_pred CCCCCCCEEEEeCCCchHHHHHHHHHHHCCC-eEEEE
Confidence 55555578999999 9999999999987653 54443
No 291
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=82.02 E-value=1.8 Score=38.37 Aligned_cols=23 Identities=13% Similarity=0.294 Sum_probs=20.8
Q ss_pred eEEEEEecCHHHHHHHHHHHcCC
Q 022491 7 IKIGINGFGRIGRLVARVALQRD 29 (296)
Q Consensus 7 i~vgI~G~G~iG~~l~r~l~~~p 29 (296)
.||.|+|+|-+|.++++.|..-.
T Consensus 33 ~~VliiG~GglGs~va~~La~~G 55 (245)
T PRK05690 33 ARVLVVGLGGLGCAASQYLAAAG 55 (245)
T ss_pred CeEEEECCCHHHHHHHHHHHHcC
Confidence 58999999999999999998765
No 292
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=81.97 E-value=2.1 Score=38.53 Aligned_cols=29 Identities=34% Similarity=0.519 Sum_probs=24.3
Q ss_pred eEEEEEecCHHHHHHHHHHHcCCCcEEEEE
Q 022491 7 IKIGINGFGRIGRLVARVALQRDDVELVAV 36 (296)
Q Consensus 7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i 36 (296)
.||+|+|+|++|..++..+..+. .+++.+
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~g-~~V~~~ 32 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVAG-YDVVMV 32 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHCC-CceEEE
Confidence 58999999999999999998875 455554
No 293
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=81.97 E-value=4.8 Score=36.83 Aligned_cols=72 Identities=17% Similarity=0.199 Sum_probs=46.4
Q ss_pred eEEEEEec-CHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEecC
Q 022491 7 IKIGINGF-GRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFR 85 (296)
Q Consensus 7 i~vgI~G~-G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~~ 85 (296)
.+|+|+|- |.+|+-+++.|.+.. .++...+++..
T Consensus 159 k~V~viGrs~~mG~PmA~~L~~~g-~tVtv~~~rT~-------------------------------------------- 193 (296)
T PRK14188 159 LNAVVIGRSNLVGKPMAQLLLAAN-ATVTIAHSRTR-------------------------------------------- 193 (296)
T ss_pred CEEEEEcCCcchHHHHHHHHHhCC-CEEEEECCCCC--------------------------------------------
Confidence 58999997 999999999988653 44433322211
Q ss_pred CCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCCC
Q 022491 86 NPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPS 130 (296)
Q Consensus 86 d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~~ 130 (296)
++++. ...+|+||.|+|.... .-...++.|+ +|||.+.
T Consensus 194 ~l~e~---~~~ADIVIsavg~~~~--v~~~~lk~Ga--vVIDvGi 231 (296)
T PRK14188 194 DLPAV---CRRADILVAAVGRPEM--VKGDWIKPGA--TVIDVGI 231 (296)
T ss_pred CHHHH---HhcCCEEEEecCChhh--cchheecCCC--EEEEcCC
Confidence 11111 2468999999997432 2233477888 8888654
No 294
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=81.96 E-value=8.3 Score=37.35 Aligned_cols=91 Identities=14% Similarity=0.187 Sum_probs=51.3
Q ss_pred eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEecCC
Q 022491 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRN 86 (296)
Q Consensus 7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~~d 86 (296)
.||+|+|+|..|+.+++.|.+.. .+ |.+.|....... ......+. ..| + .++...+
T Consensus 15 ~~i~v~G~G~sG~a~a~~L~~~G-~~-V~~~D~~~~~~~-------~~~~~~l~------~~g--i-------~~~~~~~ 70 (458)
T PRK01710 15 KKVAVVGIGVSNIPLIKFLVKLG-AK-VTAFDKKSEEEL-------GEVSNELK------ELG--V-------KLVLGEN 70 (458)
T ss_pred CeEEEEcccHHHHHHHHHHHHCC-CE-EEEECCCCCccc-------hHHHHHHH------hCC--C-------EEEeCCC
Confidence 58999999999999999999876 34 444564221110 00000000 011 1 1111111
Q ss_pred -CCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEee
Q 022491 87 -PEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVIS 127 (296)
Q Consensus 87 -~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid 127 (296)
++.+ .+.|+||-+.+--.+......+.+.|+ .|++
T Consensus 71 ~~~~~----~~~dlVV~Spgi~~~~p~~~~a~~~~i--~i~s 106 (458)
T PRK01710 71 YLDKL----DGFDVIFKTPSMRIDSPELVKAKEEGA--YITS 106 (458)
T ss_pred ChHHh----ccCCEEEECCCCCCCchHHHHHHHcCC--cEEe
Confidence 2223 468999888655556667777788888 4554
No 295
>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent. This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.
Probab=81.87 E-value=2.9 Score=39.73 Aligned_cols=25 Identities=12% Similarity=0.258 Sum_probs=21.7
Q ss_pred eEEEEEec-CHHHHHHHHHHHcCCCc
Q 022491 7 IKIGINGF-GRIGRLVARVALQRDDV 31 (296)
Q Consensus 7 i~vgI~G~-G~iG~~l~r~l~~~p~~ 31 (296)
+||+|+|+ |.+|..++-.|....-+
T Consensus 45 ~KV~IIGAaG~VG~~~A~~l~~~~l~ 70 (387)
T TIGR01757 45 VNVAVSGAAGMISNHLLFMLASGEVF 70 (387)
T ss_pred eEEEEECCCcHHHHHHHHHHHhcccc
Confidence 89999999 99999999988876533
No 296
>TIGR01777 yfcH conserved hypothetical protein TIGR01777. This model represents a clade of proteins of unknown function including the E. coli yfcH protein.
Probab=81.78 E-value=12 Score=33.17 Aligned_cols=28 Identities=29% Similarity=0.342 Sum_probs=23.0
Q ss_pred EEEEec-CHHHHHHHHHHHcCCCcEEEEEe
Q 022491 9 IGINGF-GRIGRLVARVALQRDDVELVAVN 37 (296)
Q Consensus 9 vgI~G~-G~iG~~l~r~l~~~p~~elv~i~ 37 (296)
|-|.|+ |++|..+++.|.+.. .++.++.
T Consensus 1 vlVtGatG~iG~~l~~~L~~~g-~~V~~~~ 29 (292)
T TIGR01777 1 ILITGGTGFIGRALTQRLTKDG-HEVTILT 29 (292)
T ss_pred CEEEcccchhhHHHHHHHHHcC-CEEEEEe
Confidence 358899 999999999998764 6777765
No 297
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=81.68 E-value=2.4 Score=38.63 Aligned_cols=30 Identities=27% Similarity=0.410 Sum_probs=22.5
Q ss_pred EEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491 9 IGINGFGRIGRLVARVALQRDDVELVAVNDP 39 (296)
Q Consensus 9 vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~ 39 (296)
|+|+|+|.+|..++..+..+.-.+++.+ |.
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~eV~L~-Di 30 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELGDVVLL-DI 30 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCcEEEEE-eC
Confidence 6899999999999888876653355444 65
No 298
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=81.68 E-value=3.6 Score=37.28 Aligned_cols=30 Identities=23% Similarity=0.328 Sum_probs=24.8
Q ss_pred eEEEEEec-CHHHHHHHHHHHcCCCcEEEEEe
Q 022491 7 IKIGINGF-GRIGRLVARVALQRDDVELVAVN 37 (296)
Q Consensus 7 i~vgI~G~-G~iG~~l~r~l~~~p~~elv~i~ 37 (296)
.+|-|.|+ |++|+.+++.|.+++ .+++++.
T Consensus 5 ~~ilVtGatGfIG~~l~~~L~~~g-~~V~~~~ 35 (322)
T PLN02662 5 KVVCVTGASGYIASWLVKLLLQRG-YTVKATV 35 (322)
T ss_pred CEEEEECChHHHHHHHHHHHHHCC-CEEEEEE
Confidence 57999999 999999999999875 4665554
No 299
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=81.51 E-value=11 Score=37.25 Aligned_cols=31 Identities=23% Similarity=0.101 Sum_probs=25.1
Q ss_pred eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP 39 (296)
Q Consensus 7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~ 39 (296)
-||.|+|+|.+|...++.+.... .+ |.+.|.
T Consensus 166 ~kVlViGaG~iGL~Ai~~Ak~lG-A~-V~a~D~ 196 (509)
T PRK09424 166 AKVLVIGAGVAGLAAIGAAGSLG-AI-VRAFDT 196 (509)
T ss_pred CEEEEECCcHHHHHHHHHHHHCC-CE-EEEEeC
Confidence 58999999999999999988876 45 445565
No 300
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=81.24 E-value=1.7 Score=42.10 Aligned_cols=27 Identities=22% Similarity=0.201 Sum_probs=23.0
Q ss_pred CCCCeeEEEEEecCHHHHHHHHHHHcC
Q 022491 2 AGDKKIKIGINGFGRIGRLVARVALQR 28 (296)
Q Consensus 2 ~~~m~i~vgI~G~G~iG~~l~r~l~~~ 28 (296)
..+|+.+|+|||||..|...+|.|..+
T Consensus 2 ~~~~~~~vaIIGAG~sGL~~ar~l~~~ 28 (448)
T KOG1399|consen 2 IMMMSKDVAVIGAGPAGLAAARELLRE 28 (448)
T ss_pred CcCCCCceEEECcchHHHHHHHHHHHC
Confidence 334568999999999999999999876
No 301
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=81.21 E-value=6.3 Score=36.75 Aligned_cols=29 Identities=14% Similarity=0.562 Sum_probs=22.9
Q ss_pred EEEEEecCHHHHHHHHHHHcCCCcEEEEEe
Q 022491 8 KIGINGFGRIGRLVARVALQRDDVELVAVN 37 (296)
Q Consensus 8 ~vgI~G~G~iG~~l~r~l~~~p~~elv~i~ 37 (296)
+|.|.|+|-+|..++.++.... .+++.+.
T Consensus 186 ~VlV~G~G~vG~~avq~Ak~~G-a~vi~~~ 214 (360)
T PLN02586 186 HLGVAGLGGLGHVAVKIGKAFG-LKVTVIS 214 (360)
T ss_pred EEEEECCCHHHHHHHHHHHHCC-CEEEEEe
Confidence 6899999999999988877764 5666554
No 302
>PLN02858 fructose-bisphosphate aldolase
Probab=81.00 E-value=3.3 Score=45.79 Aligned_cols=31 Identities=13% Similarity=0.152 Sum_probs=25.1
Q ss_pred eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP 39 (296)
Q Consensus 7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~ 39 (296)
.|||++|.|.+|..+++.|.++. .++. +.++
T Consensus 5 ~~IGfIGLG~MG~~mA~~L~~~G-~~v~-v~dr 35 (1378)
T PLN02858 5 GVVGFVGLDSLSFELASSLLRSG-FKVQ-AFEI 35 (1378)
T ss_pred CeEEEEchhHHHHHHHHHHHHCC-CeEE-EEcC
Confidence 58999999999999999998875 5543 4455
No 303
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=80.93 E-value=2.8 Score=43.13 Aligned_cols=29 Identities=17% Similarity=0.253 Sum_probs=23.3
Q ss_pred eEEEEEecCHHHHHHHHHHHcCCCcEEEEE
Q 022491 7 IKIGINGFGRIGRLVARVALQRDDVELVAV 36 (296)
Q Consensus 7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i 36 (296)
.||+|+|+|.+|..++..+..+. ++++.+
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G-~~V~l~ 342 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKG-VPVIMK 342 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCC-CeEEEE
Confidence 57999999999999999888764 554444
No 304
>PLN02986 cinnamyl-alcohol dehydrogenase family protein
Probab=80.76 E-value=5.5 Score=36.24 Aligned_cols=31 Identities=19% Similarity=0.278 Sum_probs=25.5
Q ss_pred eEEEEEec-CHHHHHHHHHHHcCCCcEEEEEec
Q 022491 7 IKIGINGF-GRIGRLVARVALQRDDVELVAVND 38 (296)
Q Consensus 7 i~vgI~G~-G~iG~~l~r~l~~~p~~elv~i~~ 38 (296)
.+|-|.|+ |++|+.+++.|.+++ .+++++..
T Consensus 6 ~~vlVTGatG~iG~~l~~~L~~~g-~~V~~~~r 37 (322)
T PLN02986 6 KLVCVTGASGYIASWIVKLLLLRG-YTVKATVR 37 (322)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCC-CEEEEEEC
Confidence 57999999 999999999999875 46665543
No 305
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=80.71 E-value=4.8 Score=36.08 Aligned_cols=29 Identities=28% Similarity=0.336 Sum_probs=23.6
Q ss_pred eEEEEEecCHHHHHHHHHHHcCCCcEEEEE
Q 022491 7 IKIGINGFGRIGRLVARVALQRDDVELVAV 36 (296)
Q Consensus 7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i 36 (296)
.++.|+|+|-+|+.+++.|.... .++...
T Consensus 118 k~vliiGaGg~g~aia~~L~~~g-~~v~v~ 146 (270)
T TIGR00507 118 QRVLIIGAGGAARAVALPLLKAD-CNVIIA 146 (270)
T ss_pred CEEEEEcCcHHHHHHHHHHHHCC-CEEEEE
Confidence 47999999999999999998776 455444
No 306
>PLN02427 UDP-apiose/xylose synthase
Probab=80.57 E-value=2.4 Score=39.83 Aligned_cols=31 Identities=19% Similarity=0.349 Sum_probs=26.7
Q ss_pred eEEEEEec-CHHHHHHHHHHHcCCCcEEEEEe
Q 022491 7 IKIGINGF-GRIGRLVARVALQRDDVELVAVN 37 (296)
Q Consensus 7 i~vgI~G~-G~iG~~l~r~l~~~p~~elv~i~ 37 (296)
+||-|.|+ |++|+.|++.|.++...+++++.
T Consensus 15 ~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~ 46 (386)
T PLN02427 15 LTICMIGAGGFIGSHLCEKLMTETPHKVLALD 46 (386)
T ss_pred cEEEEECCcchHHHHHHHHHHhcCCCEEEEEe
Confidence 68999999 99999999999987546777774
No 307
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=80.48 E-value=2.6 Score=43.60 Aligned_cols=29 Identities=21% Similarity=0.385 Sum_probs=23.7
Q ss_pred eEEEEEecCHHHHHHHHHHHcCCCcEEEEE
Q 022491 7 IKIGINGFGRIGRLVARVALQRDDVELVAV 36 (296)
Q Consensus 7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i 36 (296)
.||+|+|+|.+|..++..+..+. ++++.+
T Consensus 336 ~~v~ViGaG~MG~gIA~~~a~~G-~~V~l~ 364 (737)
T TIGR02441 336 KTLAVLGAGLMGAGIAQVSVDKG-LKTVLK 364 (737)
T ss_pred cEEEEECCCHhHHHHHHHHHhCC-CcEEEe
Confidence 57999999999999999888774 665544
No 308
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=80.48 E-value=2.2 Score=42.32 Aligned_cols=29 Identities=34% Similarity=0.598 Sum_probs=24.8
Q ss_pred eEEEEEecCHHHHHHHHHHHcCCCcEEEEE
Q 022491 7 IKIGINGFGRIGRLVARVALQRDDVELVAV 36 (296)
Q Consensus 7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i 36 (296)
.+|||+|+|.||+++++.|.... +++.+.
T Consensus 139 ktvgIiG~G~IG~~vA~~l~~fG-~~V~~~ 167 (525)
T TIGR01327 139 KTLGVIGLGRIGSIVAKRAKAFG-MKVLAY 167 (525)
T ss_pred CEEEEECCCHHHHHHHHHHHhCC-CEEEEE
Confidence 58999999999999999998764 777665
No 309
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=80.48 E-value=10 Score=35.00 Aligned_cols=30 Identities=30% Similarity=0.330 Sum_probs=24.1
Q ss_pred eEEEEEecCHHHHHHHHHHHcCCCcEEEEEe
Q 022491 7 IKIGINGFGRIGRLVARVALQRDDVELVAVN 37 (296)
Q Consensus 7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~ 37 (296)
-+|.|+|+|-+|...+.++.... .+++++.
T Consensus 174 ~~vlI~G~G~vG~~a~q~ak~~G-~~vi~~~ 203 (355)
T cd08230 174 RRALVLGAGPIGLLAALLLRLRG-FEVYVLN 203 (355)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC-CeEEEEe
Confidence 47999999999999998877765 5776665
No 310
>PRK07589 ornithine cyclodeaminase; Validated
Probab=80.42 E-value=5.1 Score=37.55 Aligned_cols=33 Identities=15% Similarity=0.084 Sum_probs=27.4
Q ss_pred eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP 39 (296)
Q Consensus 7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~ 39 (296)
.+++|+|+|..++..++++..--.++-+.|.++
T Consensus 130 ~~l~iiGaG~QA~~~l~a~~~vr~i~~V~v~~r 162 (346)
T PRK07589 130 RTMALIGNGAQSEFQALAFKALLGIEEIRLYDI 162 (346)
T ss_pred cEEEEECCcHHHHHHHHHHHHhCCceEEEEEeC
Confidence 679999999999999998776445777888776
No 311
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=80.06 E-value=1.6 Score=38.12 Aligned_cols=31 Identities=19% Similarity=0.261 Sum_probs=24.3
Q ss_pred eEEEEEecCHHHHHHHHHHHcCCCcEEEEEec
Q 022491 7 IKIGINGFGRIGRLVARVALQRDDVELVAVND 38 (296)
Q Consensus 7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~ 38 (296)
.||.|+|+|-+|.++++.|.... +.-..+.|
T Consensus 22 ~~VlivG~GglGs~va~~La~~G-vg~i~lvD 52 (228)
T cd00757 22 ARVLVVGAGGLGSPAAEYLAAAG-VGKLGLVD 52 (228)
T ss_pred CcEEEECCCHHHHHHHHHHHHcC-CCEEEEEc
Confidence 58999999999999999998765 43334444
No 312
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=79.97 E-value=10 Score=35.41 Aligned_cols=91 Identities=13% Similarity=0.250 Sum_probs=52.2
Q ss_pred eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEecCC
Q 022491 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRN 86 (296)
Q Consensus 7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~~d 86 (296)
-+|+|+|+|=.|...+..+.... .+++++... .+-...|..| .. +..++. .+
T Consensus 168 ~~V~I~G~GGlGh~avQ~Aka~g-a~Via~~~~-~~K~e~a~~l--GA----------------d~~i~~--------~~ 219 (339)
T COG1064 168 KWVAVVGAGGLGHMAVQYAKAMG-AEVIAITRS-EEKLELAKKL--GA----------------DHVINS--------SD 219 (339)
T ss_pred CEEEEECCcHHHHHHHHHHHHcC-CeEEEEeCC-hHHHHHHHHh--CC----------------cEEEEc--------CC
Confidence 47999999877777777776665 899998643 3322222222 11 121211 11
Q ss_pred CCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEe
Q 022491 87 PEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVI 126 (296)
Q Consensus 87 ~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvi 126 (296)
++.+.-....+|+++++.+ ..+.+..-..++.|-+.+++
T Consensus 220 ~~~~~~~~~~~d~ii~tv~-~~~~~~~l~~l~~~G~~v~v 258 (339)
T COG1064 220 SDALEAVKEIADAIIDTVG-PATLEPSLKALRRGGTLVLV 258 (339)
T ss_pred chhhHHhHhhCcEEEECCC-hhhHHHHHHHHhcCCEEEEE
Confidence 2211100123899999999 77777776777766644444
No 313
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=79.97 E-value=2.7 Score=40.81 Aligned_cols=33 Identities=24% Similarity=0.296 Sum_probs=28.1
Q ss_pred eEEEEEecCHHHHHHHHHHHcCCCcEE-EEEecC
Q 022491 7 IKIGINGFGRIGRLVARVALQRDDVEL-VAVNDP 39 (296)
Q Consensus 7 i~vgI~G~G~iG~~l~r~l~~~p~~el-v~i~~~ 39 (296)
.+|+|||.|..|-.++..|.++|..+- +.|.++
T Consensus 2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~ 35 (474)
T COG4529 2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEP 35 (474)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCCCCceEEecc
Confidence 689999999999999999999876554 777665
No 314
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=79.84 E-value=1.8 Score=37.26 Aligned_cols=32 Identities=22% Similarity=0.283 Sum_probs=24.7
Q ss_pred eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP 39 (296)
Q Consensus 7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~ 39 (296)
.||+|+|+|-+|.+++..|.... +.-+.+.|.
T Consensus 22 ~~V~IvG~GglGs~ia~~La~~G-vg~i~lvD~ 53 (200)
T TIGR02354 22 ATVAICGLGGLGSNVAINLARAG-IGKLILVDF 53 (200)
T ss_pred CcEEEECcCHHHHHHHHHHHHcC-CCEEEEECC
Confidence 68999999999999999998765 533344454
No 315
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=79.73 E-value=4.5 Score=41.71 Aligned_cols=29 Identities=17% Similarity=0.229 Sum_probs=23.7
Q ss_pred eEEEEEecCHHHHHHHHHHHcCCCcEEEEE
Q 022491 7 IKIGINGFGRIGRLVARVALQRDDVELVAV 36 (296)
Q Consensus 7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i 36 (296)
.||+|+|+|.+|..++..+..+. ++++.+
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G-~~V~l~ 342 (714)
T TIGR02437 314 KQAAVLGAGIMGGGIAYQSASKG-TPIVMK 342 (714)
T ss_pred ceEEEECCchHHHHHHHHHHhCC-CeEEEE
Confidence 47999999999999999888774 555444
No 316
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=79.69 E-value=2.4 Score=42.08 Aligned_cols=30 Identities=37% Similarity=0.565 Sum_probs=25.1
Q ss_pred eEEEEEecCHHHHHHHHHHHcCCCcEEEEEe
Q 022491 7 IKIGINGFGRIGRLVARVALQRDDVELVAVN 37 (296)
Q Consensus 7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~ 37 (296)
.+|||+|+|.||+.+++.+.... +++.+..
T Consensus 141 ktvgIiG~G~IG~~vA~~l~~fG-~~V~~~d 170 (526)
T PRK13581 141 KTLGIIGLGRIGSEVAKRAKAFG-MKVIAYD 170 (526)
T ss_pred CEEEEECCCHHHHHHHHHHHhCC-CEEEEEC
Confidence 58999999999999999998664 7776653
No 317
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=79.63 E-value=2.6 Score=38.57 Aligned_cols=31 Identities=32% Similarity=0.261 Sum_probs=24.8
Q ss_pred eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP 39 (296)
Q Consensus 7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~ 39 (296)
+||+|+|+|.+|..++..|.++. .++... ++
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~G-~~V~v~-d~ 33 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARAG-HEVRLW-DA 33 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHCC-CeeEEE-eC
Confidence 58999999999999999998875 455444 44
No 318
>PRK05865 hypothetical protein; Provisional
Probab=79.61 E-value=7.9 Score=40.67 Aligned_cols=30 Identities=27% Similarity=0.516 Sum_probs=24.8
Q ss_pred eEEEEEec-CHHHHHHHHHHHcCCCcEEEEEe
Q 022491 7 IKIGINGF-GRIGRLVARVALQRDDVELVAVN 37 (296)
Q Consensus 7 i~vgI~G~-G~iG~~l~r~l~~~p~~elv~i~ 37 (296)
|||.|.|+ |.+|+.+++.|.++. .+++.+.
T Consensus 1 MkILVTGATGfIGs~La~~Ll~~G-~~Vv~l~ 31 (854)
T PRK05865 1 MRIAVTGASGVLGRGLTARLLSQG-HEVVGIA 31 (854)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCc-CEEEEEE
Confidence 37999999 999999999998875 4666654
No 319
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=79.30 E-value=1.6 Score=42.99 Aligned_cols=31 Identities=23% Similarity=0.116 Sum_probs=24.3
Q ss_pred eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP 39 (296)
Q Consensus 7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~ 39 (296)
-||.|+|+|.+|...++.+.... .. +.+.+.
T Consensus 165 akVlViGaG~iGl~Aa~~ak~lG-A~-V~v~d~ 195 (511)
T TIGR00561 165 AKVLVIGAGVAGLAAIGAANSLG-AI-VRAFDT 195 (511)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC-CE-EEEEeC
Confidence 58999999999999999988875 44 444444
No 320
>PRK06444 prephenate dehydrogenase; Provisional
Probab=79.28 E-value=2.7 Score=36.12 Aligned_cols=22 Identities=27% Similarity=0.407 Sum_probs=19.6
Q ss_pred eEEEEEec-CHHHHHHHHHHHcC
Q 022491 7 IKIGINGF-GRIGRLVARVALQR 28 (296)
Q Consensus 7 i~vgI~G~-G~iG~~l~r~l~~~ 28 (296)
+|++|+|. |.+|+.+.+.+.+.
T Consensus 1 ~~~~iiG~~G~mG~~~~~~~~~~ 23 (197)
T PRK06444 1 MMEIIIGKNGRLGRVLCSILDDN 23 (197)
T ss_pred CEEEEEecCCcHHHHHHHHHHhC
Confidence 47999999 99999999998764
No 321
>KOG2742 consensus Predicted oxidoreductase [General function prediction only]
Probab=79.02 E-value=1.2 Score=41.19 Aligned_cols=92 Identities=18% Similarity=0.234 Sum_probs=61.8
Q ss_pred EEEEecCHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEecCCCC
Q 022491 9 IGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPE 88 (296)
Q Consensus 9 vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~~d~~ 88 (296)
|||.|.|...+-++-+|.+-| +++.++-.+ ...+ +....+ ... ++... +..+
T Consensus 5 v~v~GTg~~arv~iP~l~e~~-f~v~A~w~R-t~~e--------a~a~aa------------~~~-----v~~~t-~~~d 56 (367)
T KOG2742|consen 5 VGVFGTGIFARVLIPLLKEEG-FEVKAIWGR-TKTE--------AKAKAA------------EMN-----VRKYT-SRLD 56 (367)
T ss_pred eeEeccChhHhhhhhhhhhcc-chHhhhhch-hhhH--------HHHhhh------------ccc-----hhhcc-ccch
Confidence 999999999999988888888 877777655 2111 110000 011 11111 1344
Q ss_pred CCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCCC
Q 022491 89 EIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPS 130 (296)
Q Consensus 89 ~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~~ 130 (296)
++ |.+.++|+|+.+.|...+++.+.+++..|. .|+.+.++
T Consensus 57 ei-Ll~~~vdlv~i~lpp~~~~eI~~kal~~Gk-~Vvcek~a 96 (367)
T KOG2742|consen 57 EI-LLDQDVDLVCISLPPPLHAEIVVKALGIGK-HVVCEKPA 96 (367)
T ss_pred hh-hccCCcceeEeccCCccceeeeeccccCCc-eEEeccCC
Confidence 54 557899999999999999999999888885 46676665
No 322
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=78.93 E-value=2.5 Score=40.18 Aligned_cols=28 Identities=36% Similarity=0.472 Sum_probs=22.7
Q ss_pred EEEEEecCHHHHHHHHHHHcCCCcEEEEEe
Q 022491 8 KIGINGFGRIGRLVARVALQRDDVELVAVN 37 (296)
Q Consensus 8 ~vgI~G~G~iG~~l~r~l~~~p~~elv~i~ 37 (296)
||+|+|.||+|.-++.++.. ..+++++.
T Consensus 2 kI~VIGlGyvGl~~A~~lA~--G~~VigvD 29 (388)
T PRK15057 2 KITISGTGYVGLSNGLLIAQ--NHEVVALD 29 (388)
T ss_pred EEEEECCCHHHHHHHHHHHh--CCcEEEEE
Confidence 79999999999999977664 36776664
No 323
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=78.88 E-value=5.4 Score=37.17 Aligned_cols=96 Identities=23% Similarity=0.290 Sum_probs=54.0
Q ss_pred EEEEEecCHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEE-EEEecCC
Q 022491 8 KIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPV-AVFGFRN 86 (296)
Q Consensus 8 ~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i-~~~~~~d 86 (296)
.|+|+|.|-+|...+.-+..-..-+|++| |...+-..+|..| ..+| .+|.++. .+.. -
T Consensus 188 tvaV~GlGgVGlaaI~gA~~agA~~IiAv-D~~~~Kl~~A~~f--GAT~----------------~vn~~~~~~vv~--~ 246 (366)
T COG1062 188 TVAVFGLGGVGLAAIQGAKAAGAGRIIAV-DINPEKLELAKKF--GATH----------------FVNPKEVDDVVE--A 246 (366)
T ss_pred eEEEEeccHhHHHHHHHHHHcCCceEEEE-eCCHHHHHHHHhc--CCce----------------eecchhhhhHHH--H
Confidence 69999999999999887777666778887 3312222222211 2211 1222111 0100 0
Q ss_pred CCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEe
Q 022491 87 PEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVI 126 (296)
Q Consensus 87 ~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvi 126 (296)
..++ | ..++|++|+|+|.-...+.+-.+...+=+.+++
T Consensus 247 i~~~-T-~gG~d~~~e~~G~~~~~~~al~~~~~~G~~v~i 284 (366)
T COG1062 247 IVEL-T-DGGADYAFECVGNVEVMRQALEATHRGGTSVII 284 (366)
T ss_pred HHHh-c-CCCCCEEEEccCCHHHHHHHHHHHhcCCeEEEE
Confidence 1223 2 248999999999977766665555554333444
No 324
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=78.80 E-value=3.6 Score=35.27 Aligned_cols=31 Identities=19% Similarity=0.185 Sum_probs=25.1
Q ss_pred eeEEEEEec-CHHHHHHHHHHHcCCCcEEEEEe
Q 022491 6 KIKIGINGF-GRIGRLVARVALQRDDVELVAVN 37 (296)
Q Consensus 6 ~i~vgI~G~-G~iG~~l~r~l~~~p~~elv~i~ 37 (296)
+.++-|.|+ |.+|+.+++.|.+++ .+++.+.
T Consensus 5 ~~~ilItGasg~iG~~l~~~l~~~g-~~v~~~~ 36 (246)
T PRK05653 5 GKTALVTGASRGIGRAIALRLAADG-AKVVIYD 36 (246)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEe
Confidence 368999999 999999999999875 4554443
No 325
>PRK06153 hypothetical protein; Provisional
Probab=78.67 E-value=2.4 Score=40.25 Aligned_cols=30 Identities=20% Similarity=0.310 Sum_probs=24.3
Q ss_pred eEEEEEecCHHHHHHHHHHHcCCCcEEEEE
Q 022491 7 IKIGINGFGRIGRLVARVALQRDDVELVAV 36 (296)
Q Consensus 7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i 36 (296)
.||+|+|+|=+|..++..|.+-+--+++-|
T Consensus 177 ~~VaIVG~GG~GS~Va~~LAR~GVgeI~LV 206 (393)
T PRK06153 177 QRIAIIGLGGTGSYILDLVAKTPVREIHLF 206 (393)
T ss_pred CcEEEEcCCccHHHHHHHHHHcCCCEEEEE
Confidence 589999999999999999998774455444
No 326
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=78.50 E-value=3.3 Score=36.52 Aligned_cols=22 Identities=23% Similarity=0.206 Sum_probs=19.8
Q ss_pred EEEEEecCHHHHHHHHHHHcCC
Q 022491 8 KIGINGFGRIGRLVARVALQRD 29 (296)
Q Consensus 8 ~vgI~G~G~iG~~l~r~l~~~p 29 (296)
||.|+|+|-+|.++++.|...+
T Consensus 1 kVlvvG~GGlG~eilk~La~~G 22 (234)
T cd01484 1 KVLLVGAGGIGCELLKNLALMG 22 (234)
T ss_pred CEEEECCCHHHHHHHHHHHHcC
Confidence 5899999999999999998765
No 327
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=78.31 E-value=3.5 Score=38.68 Aligned_cols=30 Identities=27% Similarity=0.358 Sum_probs=25.9
Q ss_pred eEEEEEec-CHHHHHHHHHHHcCCCcEEEEEe
Q 022491 7 IKIGINGF-GRIGRLVARVALQRDDVELVAVN 37 (296)
Q Consensus 7 i~vgI~G~-G~iG~~l~r~l~~~p~~elv~i~ 37 (296)
+||-|.|+ |++|+.+++.|.++. .++.++.
T Consensus 22 ~~IlVtGgtGfIG~~l~~~L~~~G-~~V~~v~ 52 (370)
T PLN02695 22 LRICITGAGGFIASHIARRLKAEG-HYIIASD 52 (370)
T ss_pred CEEEEECCccHHHHHHHHHHHhCC-CEEEEEE
Confidence 78999999 999999999999875 5776664
No 328
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=78.14 E-value=3.2 Score=39.70 Aligned_cols=35 Identities=31% Similarity=0.244 Sum_probs=29.6
Q ss_pred CeeEEEEEecCHHHHHHHHHHHcCC-CcEEEEEecC
Q 022491 5 KKIKIGINGFGRIGRLVARVALQRD-DVELVAVNDP 39 (296)
Q Consensus 5 m~i~vgI~G~G~iG~~l~r~l~~~p-~~elv~i~~~ 39 (296)
|+.||-|+|+|+.|..+++.|.+++ +++++-|...
T Consensus 2 ~~~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~ 37 (405)
T COG1252 2 MKKRIVILGGGFGGLSAAKRLARKLPDVEITLVDRR 37 (405)
T ss_pred CCceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCC
Confidence 4579999999999999999999885 7888877543
No 329
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=78.12 E-value=2.8 Score=39.35 Aligned_cols=34 Identities=15% Similarity=0.148 Sum_probs=27.9
Q ss_pred CeeEEEEEecCHHHHHHHHHHHc-CCCcEEEEEec
Q 022491 5 KKIKIGINGFGRIGRLVARVALQ-RDDVELVAVND 38 (296)
Q Consensus 5 m~i~vgI~G~G~iG~~l~r~l~~-~p~~elv~i~~ 38 (296)
|+.+|.|+|+|..|..+++.|.+ .++.+|+-|..
T Consensus 1 m~~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~ 35 (377)
T PRK04965 1 MSNGIVIIGSGFAARQLVKNIRKQDAHIPITLITA 35 (377)
T ss_pred CCCCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeC
Confidence 34689999999999999999876 56788877753
No 330
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=77.91 E-value=3.4 Score=37.41 Aligned_cols=31 Identities=29% Similarity=0.426 Sum_probs=24.8
Q ss_pred eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP 39 (296)
Q Consensus 7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~ 39 (296)
.||+|+|+|.+|..++..+..+. .+++.+ |+
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G-~~V~l~-d~ 34 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTG-YDVTIV-DV 34 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcC-CeEEEE-eC
Confidence 57999999999999999998875 465544 44
No 331
>TIGR03855 NAD_NadX aspartate dehydrogenase. Members of this protein family are L-aspartate dehydrogenase, as shown for the NADP-dependent enzyme TM_1643 of Thermotoga maritima. Members lack homology to NadB, the aspartate oxidase (EC 1.4.3.16) of most mesophilic bacteria (described by TIGR00551), which this enzyme replaces in the generation of oxaloacetate from aspartate for the NAD biosynthetic pathway. All members of the seed alignment are found adjacent to other genes of NAD biosynthesis, although other uses of L-aspartate dehydrogenase may occur.
Probab=77.84 E-value=2.5 Score=37.17 Aligned_cols=32 Identities=25% Similarity=0.315 Sum_probs=28.0
Q ss_pred CCCcEEEEccCCccCHHHHHHHHHCCCCeEEe
Q 022491 95 TGAEYVVESTGVFTDKDKAAAHLKGGAKKVVI 126 (296)
Q Consensus 95 ~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvi 126 (296)
.++|+|++|||+..+.+++.+++++|...++.
T Consensus 36 ~~vDaVviatp~~~H~e~a~~aL~aGkhVl~~ 67 (229)
T TIGR03855 36 EDVDIVVEAASQEAVKEYAEKILKNGKDLLIM 67 (229)
T ss_pred CCCCEEEECCChHHHHHHHHHHHHCCCCEEEE
Confidence 47999999999999999999999999764443
No 332
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=77.76 E-value=1.8 Score=40.16 Aligned_cols=22 Identities=36% Similarity=0.610 Sum_probs=19.9
Q ss_pred eEEEEEecCHHHHHHHHHHHcC
Q 022491 7 IKIGINGFGRIGRLVARVALQR 28 (296)
Q Consensus 7 i~vgI~G~G~iG~~l~r~l~~~ 28 (296)
.+|||+|+|+||+.+++.|..-
T Consensus 163 K~vgilG~G~IG~~ia~rL~~F 184 (336)
T KOG0069|consen 163 KTVGILGLGRIGKAIAKRLKPF 184 (336)
T ss_pred CEEEEecCcHHHHHHHHhhhhc
Confidence 6899999999999999988763
No 333
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=77.42 E-value=8.1 Score=35.64 Aligned_cols=29 Identities=31% Similarity=0.429 Sum_probs=21.9
Q ss_pred EEEEEecCHHHHHHHHHHHc-CCCcEEEEE
Q 022491 8 KIGINGFGRIGRLVARVALQ-RDDVELVAV 36 (296)
Q Consensus 8 ~vgI~G~G~iG~~l~r~l~~-~p~~elv~i 36 (296)
+|.|+|+|-+|..++.++.. ....+++++
T Consensus 166 ~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~ 195 (341)
T cd08237 166 VIGVWGDGNLGYITALLLKQIYPESKLVVF 195 (341)
T ss_pred EEEEECCCHHHHHHHHHHHHhcCCCcEEEE
Confidence 69999999999988887765 444555555
No 334
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase. This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.
Probab=77.36 E-value=3.4 Score=37.80 Aligned_cols=29 Identities=24% Similarity=0.286 Sum_probs=22.6
Q ss_pred EEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491 11 INGFGRIGRLVARVALQRDDVELVAVNDP 39 (296)
Q Consensus 11 I~G~G~iG~~l~r~l~~~p~~elv~i~~~ 39 (296)
|+|+|.+|..++-.|..++-+.-+.+.|.
T Consensus 1 iIGaG~VG~~~a~~l~~~~l~~el~L~Di 29 (299)
T TIGR01771 1 IIGAGNVGSSTAFALLNQGIADEIVLIDI 29 (299)
T ss_pred CCCcCHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 68999999999999988876644444454
No 335
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=77.16 E-value=3.7 Score=37.85 Aligned_cols=33 Identities=24% Similarity=0.309 Sum_probs=25.0
Q ss_pred eEEEEEec-CHHHHHHHHHHHcCCCcEEEEEecC
Q 022491 7 IKIGINGF-GRIGRLVARVALQRDDVELVAVNDP 39 (296)
Q Consensus 7 i~vgI~G~-G~iG~~l~r~l~~~p~~elv~i~~~ 39 (296)
+||+|+|+ |.+|..++-.|...+-..-+.+.|.
T Consensus 1 ~KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi 34 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDI 34 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEec
Confidence 48999999 9999999999887765433334444
No 336
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=77.12 E-value=6.9 Score=34.89 Aligned_cols=31 Identities=19% Similarity=0.156 Sum_probs=23.1
Q ss_pred EEEEec-CHHHHHHHHHHHcCC--CcEEEEEecC
Q 022491 9 IGINGF-GRIGRLVARVALQRD--DVELVAVNDP 39 (296)
Q Consensus 9 vgI~G~-G~iG~~l~r~l~~~p--~~elv~i~~~ 39 (296)
|+|+|+ |.+|..++..|...+ ...-+.+.|.
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~ 34 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDI 34 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeC
Confidence 589999 999999999988766 4333444454
No 337
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=76.83 E-value=4.9 Score=37.48 Aligned_cols=30 Identities=20% Similarity=0.223 Sum_probs=23.6
Q ss_pred eEEEEEecCHHHHHHHHHHHcCCCcEEEEE
Q 022491 7 IKIGINGFGRIGRLVARVALQRDDVELVAV 36 (296)
Q Consensus 7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i 36 (296)
.||.|+|+|-+|.+++..|....-=++..|
T Consensus 25 ~~VlVvG~GglGs~va~~La~aGvg~i~lv 54 (339)
T PRK07688 25 KHVLIIGAGALGTANAEMLVRAGVGKVTIV 54 (339)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCeEEEE
Confidence 589999999999999999987652244444
No 338
>PRK07326 short chain dehydrogenase; Provisional
Probab=76.57 E-value=4.4 Score=34.79 Aligned_cols=31 Identities=19% Similarity=0.109 Sum_probs=25.4
Q ss_pred eeEEEEEec-CHHHHHHHHHHHcCCCcEEEEEe
Q 022491 6 KIKIGINGF-GRIGRLVARVALQRDDVELVAVN 37 (296)
Q Consensus 6 ~i~vgI~G~-G~iG~~l~r~l~~~p~~elv~i~ 37 (296)
..++-|.|+ |.+|+.+++.|.++ ..+++.+.
T Consensus 6 ~~~ilItGatg~iG~~la~~l~~~-g~~V~~~~ 37 (237)
T PRK07326 6 GKVALITGGSKGIGFAIAEALLAE-GYKVAITA 37 (237)
T ss_pred CCEEEEECCCCcHHHHHHHHHHHC-CCEEEEee
Confidence 367999999 99999999999887 46766653
No 339
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=76.48 E-value=9.6 Score=35.54 Aligned_cols=28 Identities=25% Similarity=0.405 Sum_probs=21.8
Q ss_pred EEEEEecCHHHHHHHHHHHcCCCc-EEEEE
Q 022491 8 KIGINGFGRIGRLVARVALQRDDV-ELVAV 36 (296)
Q Consensus 8 ~vgI~G~G~iG~~l~r~l~~~p~~-elv~i 36 (296)
+|.|+|+|.+|..++.++.... + +++++
T Consensus 194 ~VlV~G~G~vG~~a~~lak~~G-~~~Vi~~ 222 (371)
T cd08281 194 SVAVVGLGGVGLSALLGAVAAG-ASQVVAV 222 (371)
T ss_pred EEEEECCCHHHHHHHHHHHHcC-CCcEEEE
Confidence 6899999999999888877664 4 45554
No 340
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=76.48 E-value=5.9 Score=36.09 Aligned_cols=23 Identities=30% Similarity=0.476 Sum_probs=20.7
Q ss_pred eEEEEEecCHHHHHHHHHHHcCC
Q 022491 7 IKIGINGFGRIGRLVARVALQRD 29 (296)
Q Consensus 7 i~vgI~G~G~iG~~l~r~l~~~p 29 (296)
+|||.||+|.+|.-+++.|.+..
T Consensus 1 ~kIafIGLG~MG~pmA~~L~~aG 23 (286)
T COG2084 1 MKIAFIGLGIMGSPMAANLLKAG 23 (286)
T ss_pred CeEEEEcCchhhHHHHHHHHHCC
Confidence 37999999999999999998865
No 341
>PRK08219 short chain dehydrogenase; Provisional
Probab=76.46 E-value=3.6 Score=34.96 Aligned_cols=30 Identities=23% Similarity=0.176 Sum_probs=24.8
Q ss_pred eeEEEEEec-CHHHHHHHHHHHcCCCcEEEEEe
Q 022491 6 KIKIGINGF-GRIGRLVARVALQRDDVELVAVN 37 (296)
Q Consensus 6 ~i~vgI~G~-G~iG~~l~r~l~~~p~~elv~i~ 37 (296)
|+++-|.|+ |.+|+.+++.|.++ .+++.+.
T Consensus 3 ~~~vlVtG~~g~iG~~l~~~l~~~--~~V~~~~ 33 (227)
T PRK08219 3 RPTALITGASRGIGAAIARELAPT--HTLLLGG 33 (227)
T ss_pred CCEEEEecCCcHHHHHHHHHHHhh--CCEEEEe
Confidence 367999999 99999999999887 5666654
No 342
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase.
Probab=75.94 E-value=17 Score=34.75 Aligned_cols=85 Identities=27% Similarity=0.342 Sum_probs=48.0
Q ss_pred EEEEEecCHHHHHHHHHHHcCCCcEEEEEecCCCChhhhh--hcccccccCCCCcCcceeeeCCceeEECCEEEEEEecC
Q 022491 8 KIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMT--YMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFR 85 (296)
Q Consensus 8 ~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a--~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~~ 85 (296)
|+.|+|.|.+|..++|+|.++. .++ .++|......... .+++. ..| +.++...
T Consensus 1 ~~~~iG~G~~G~a~a~~l~~~G-~~V-~~sD~~~~~~~~~~~~~~~~--------------~~g---------i~~~~g~ 55 (433)
T TIGR01087 1 KILILGLGKTGRAVARFLHKKG-AEV-TVTDLKPNEELEPSMGQLRL--------------NEG---------SVLHTGL 55 (433)
T ss_pred CEEEEEeCHhHHHHHHHHHHCC-CEE-EEEeCCCCccchhHHHHHhh--------------ccC---------cEEEecC
Confidence 5789999999999999999876 443 4455411211000 00000 001 1122212
Q ss_pred CCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCC
Q 022491 86 NPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGA 121 (296)
Q Consensus 86 d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~ 121 (296)
+++.+ .+.|+|+-+.+-..+......+.+.|+
T Consensus 56 ~~~~~----~~~d~vv~sp~i~~~~p~~~~a~~~~i 87 (433)
T TIGR01087 56 HLEDL----NNADLVVKSPGIPPDHPLVQAAAKRGI 87 (433)
T ss_pred chHHh----ccCCEEEECCCCCCCCHHHHHHHHCCC
Confidence 33333 468988888776555566667778887
No 343
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=75.80 E-value=4.3 Score=37.86 Aligned_cols=32 Identities=19% Similarity=0.297 Sum_probs=24.7
Q ss_pred eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP 39 (296)
Q Consensus 7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~ 39 (296)
.||.|+|+|-+|..+++.|.... +.-+.|.|.
T Consensus 25 ~~VlIiG~GglGs~va~~La~aG-vg~i~lvD~ 56 (338)
T PRK12475 25 KHVLIVGAGALGAANAEALVRAG-IGKLTIADR 56 (338)
T ss_pred CcEEEECCCHHHHHHHHHHHHcC-CCEEEEEcC
Confidence 58999999999999999998765 433344454
No 344
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=75.71 E-value=4.1 Score=39.26 Aligned_cols=29 Identities=28% Similarity=0.383 Sum_probs=24.7
Q ss_pred eEEEEEecCHHHHHHHHHHHcCCCcEEEEEe
Q 022491 7 IKIGINGFGRIGRLVARVALQRDDVELVAVN 37 (296)
Q Consensus 7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~ 37 (296)
+||||+|.||+|.-++..|... .+++++.
T Consensus 7 mkI~vIGlGyvGlpmA~~la~~--~~V~g~D 35 (425)
T PRK15182 7 VKIAIIGLGYVGLPLAVEFGKS--RQVVGFD 35 (425)
T ss_pred CeEEEECcCcchHHHHHHHhcC--CEEEEEe
Confidence 6899999999999999987763 7877764
No 345
>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]
Probab=75.57 E-value=7 Score=36.38 Aligned_cols=33 Identities=18% Similarity=0.170 Sum_probs=28.4
Q ss_pred eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP 39 (296)
Q Consensus 7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~ 39 (296)
-.+||+|+|..++-.++++...-+++-+.|.++
T Consensus 131 ~~laiIGaG~qA~~ql~a~~~v~~~~~I~i~~r 163 (330)
T COG2423 131 STLAIIGAGAQARTQLEALKAVRDIREIRVYSR 163 (330)
T ss_pred cEEEEECCcHHHHHHHHHHHhhCCccEEEEEcC
Confidence 468999999999999999988666887888877
No 346
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=75.55 E-value=4.4 Score=37.55 Aligned_cols=30 Identities=20% Similarity=0.264 Sum_probs=24.9
Q ss_pred eEEEEEec-CHHHHHHHHHHHcCCCc------EEEEE
Q 022491 7 IKIGINGF-GRIGRLVARVALQRDDV------ELVAV 36 (296)
Q Consensus 7 i~vgI~G~-G~iG~~l~r~l~~~p~~------elv~i 36 (296)
+||+|+|+ |++|..++..|...+-+ |++.+
T Consensus 3 ~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~ 39 (325)
T cd01336 3 IRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLL 39 (325)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEE
Confidence 78999999 99999999999876533 66655
No 347
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=75.38 E-value=4.4 Score=38.09 Aligned_cols=35 Identities=20% Similarity=0.202 Sum_probs=26.6
Q ss_pred CCCCCeeEEEEEecCHHHHHHHHHHHcCCCcEEEEE
Q 022491 1 MAGDKKIKIGINGFGRIGRLVARVALQRDDVELVAV 36 (296)
Q Consensus 1 m~~~m~i~vgI~G~G~iG~~l~r~l~~~p~~elv~i 36 (296)
|+..++.+|.|+|+|.+|..++..|.++. ++++-+
T Consensus 1 ~~~~~~~dV~IvGaG~aGl~~A~~La~~G-~~v~li 35 (392)
T PRK08773 1 MSRRSRRDAVIVGGGVVGAACALALADAG-LSVALV 35 (392)
T ss_pred CCCCCCCCEEEECcCHHHHHHHHHHhcCC-CEEEEE
Confidence 66555578999999999999998887764 564333
No 348
>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent. This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography
Probab=75.37 E-value=5.5 Score=36.92 Aligned_cols=22 Identities=18% Similarity=0.389 Sum_probs=19.3
Q ss_pred EEEEEec-CHHHHHHHHHHHcCC
Q 022491 8 KIGINGF-GRIGRLVARVALQRD 29 (296)
Q Consensus 8 ~vgI~G~-G~iG~~l~r~l~~~p 29 (296)
||+|+|+ |.+|..++..|....
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~~ 23 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARGR 23 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhcc
Confidence 6899999 999999999888644
No 349
>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.
Probab=75.28 E-value=4.5 Score=36.57 Aligned_cols=30 Identities=33% Similarity=0.533 Sum_probs=25.6
Q ss_pred eEEEEEec-CHHHHHHHHHHHcCCCcEEEEEe
Q 022491 7 IKIGINGF-GRIGRLVARVALQRDDVELVAVN 37 (296)
Q Consensus 7 i~vgI~G~-G~iG~~l~r~l~~~p~~elv~i~ 37 (296)
|||-|+|+ |++|+.+.+.|.++ ..+++++.
T Consensus 1 MriLI~GasG~lG~~l~~~l~~~-~~~v~~~~ 31 (286)
T PF04321_consen 1 MRILITGASGFLGSALARALKER-GYEVIATS 31 (286)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTT-SEEEEEES
T ss_pred CEEEEECCCCHHHHHHHHHHhhC-CCEEEEeC
Confidence 68999999 99999999999875 37777773
No 350
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=75.17 E-value=4.1 Score=36.82 Aligned_cols=27 Identities=26% Similarity=0.321 Sum_probs=20.3
Q ss_pred EEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491 11 INGFGRIGRLVARVALQRDDVELVAVNDP 39 (296)
Q Consensus 11 I~G~G~iG~~l~r~l~~~p~~elv~i~~~ 39 (296)
|+|.|.+|..+++.|.+.. .++ .+.++
T Consensus 1 ~IGlG~mG~~mA~~L~~~G-~~V-~v~dr 27 (288)
T TIGR01692 1 FIGLGNMGGPMAANLLKAG-HPV-RVFDL 27 (288)
T ss_pred CCcccHhHHHHHHHHHhCC-CeE-EEEeC
Confidence 5799999999999998764 354 34454
No 351
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=75.06 E-value=19 Score=35.09 Aligned_cols=83 Identities=19% Similarity=0.185 Sum_probs=49.1
Q ss_pred eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEecC-
Q 022491 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFR- 85 (296)
Q Consensus 7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~~- 85 (296)
.||.|+|+|.+|+.+++.|.+... + |.+.|. +......++ +. .| +.++...
T Consensus 16 ~~v~v~G~G~sG~a~a~~L~~~G~-~-V~~~D~--~~~~~~~~l--~~-------------~g---------i~~~~~~~ 67 (473)
T PRK00141 16 GRVLVAGAGVSGRGIAAMLSELGC-D-VVVADD--NETARHKLI--EV-------------TG---------VADISTAE 67 (473)
T ss_pred CeEEEEccCHHHHHHHHHHHHCCC-E-EEEECC--ChHHHHHHH--Hh-------------cC---------cEEEeCCC
Confidence 579999999999999999988763 4 444554 211111111 10 01 1122211
Q ss_pred CCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCC
Q 022491 86 NPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGA 121 (296)
Q Consensus 86 d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~ 121 (296)
+++.+ .+.|+||-+.+-.-.......+.+.|+
T Consensus 68 ~~~~~----~~~d~vV~Spgi~~~~p~~~~a~~~gi 99 (473)
T PRK00141 68 ASDQL----DSFSLVVTSPGWRPDSPLLVDAQSQGL 99 (473)
T ss_pred chhHh----cCCCEEEeCCCCCCCCHHHHHHHHCCC
Confidence 22223 368999888776555566677778887
No 352
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=74.97 E-value=9.3 Score=34.76 Aligned_cols=32 Identities=25% Similarity=0.242 Sum_probs=26.2
Q ss_pred eEEEEEecCHHHHHHHHHHHcCCCcEEEEEec
Q 022491 7 IKIGINGFGRIGRLVARVALQRDDVELVAVND 38 (296)
Q Consensus 7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~ 38 (296)
.++.|+|+|=+++.++..|.++.--+|+-+|-
T Consensus 127 ~~vlilGAGGAarAv~~aL~~~g~~~i~V~NR 158 (283)
T COG0169 127 KRVLILGAGGAARAVAFALAEAGAKRITVVNR 158 (283)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCEEEEEeC
Confidence 47999999888999999999887556666663
No 353
>PRK07877 hypothetical protein; Provisional
Probab=74.95 E-value=3 Score=42.91 Aligned_cols=35 Identities=26% Similarity=0.155 Sum_probs=25.3
Q ss_pred CCCcEEEEccCCccCHHHHH-HHHHCCCCeEEeeCCCC
Q 022491 95 TGAEYVVESTGVFTDKDKAA-AHLKGGAKKVVISAPSK 131 (296)
Q Consensus 95 ~~~DvV~~at~~~~~~~~~~-~~l~~G~k~vvid~~~~ 131 (296)
.++|+||+|+..+.++-.+. .+.+.|. .+|+++++
T Consensus 195 ~~~DlVvD~~D~~~~R~~ln~~a~~~~i--P~i~~~~~ 230 (722)
T PRK07877 195 DGLDVVVEECDSLDVKVLLREAARARRI--PVLMATSD 230 (722)
T ss_pred cCCCEEEECCCCHHHHHHHHHHHHHcCC--CEEEEcCC
Confidence 57999999999988776554 4466777 56665543
No 354
>PLN00125 Succinyl-CoA ligase [GDP-forming] subunit alpha
Probab=74.80 E-value=11 Score=34.53 Aligned_cols=86 Identities=16% Similarity=0.105 Sum_probs=56.2
Q ss_pred eEEEEEec-CHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEecC
Q 022491 7 IKIGINGF-GRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFR 85 (296)
Q Consensus 7 i~vgI~G~-G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~~ 85 (296)
-||-|.|. |+.|..+.+.+.+-+--=+.+|+ +.... +..+ | ++++.
T Consensus 13 ~~v~~~gi~~~~~~~~~~~~~~ygt~~~~gV~-p~~~~---------~~i~-------------------G--~~~y~-- 59 (300)
T PLN00125 13 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVT-PKKGG---------TEHL-------------------G--LPVFN-- 59 (300)
T ss_pred CeEEEecCCCHHHHHHHHHHHHhCCcEEEEEC-CCCCC---------ceEc-------------------C--eeccC--
Confidence 58999999 99999999988877533333443 31111 1111 1 12222
Q ss_pred CCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEe
Q 022491 86 NPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVI 126 (296)
Q Consensus 86 d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvi 126 (296)
+..+++- ..++|+++.++|.....+.++++.++|+|.++|
T Consensus 60 sv~dlp~-~~~~DlAvI~vPa~~v~~al~e~~~~Gvk~~vI 99 (300)
T PLN00125 60 TVAEAKA-ETKANASVIYVPPPFAAAAILEAMEAELDLVVC 99 (300)
T ss_pred CHHHHhh-ccCCCEEEEecCHHHHHHHHHHHHHcCCCEEEE
Confidence 3344431 014799999999999899999999999996654
No 355
>PRK06847 hypothetical protein; Provisional
Probab=74.61 E-value=4.4 Score=37.64 Aligned_cols=31 Identities=26% Similarity=0.100 Sum_probs=24.7
Q ss_pred CCCCCeeEEEEEecCHHHHHHHHHHHcCCCcEEE
Q 022491 1 MAGDKKIKIGINGFGRIGRLVARVALQRDDVELV 34 (296)
Q Consensus 1 m~~~m~i~vgI~G~G~iG~~l~r~l~~~p~~elv 34 (296)
|+.+ .+|.|+|+|..|..++..|.++. ++++
T Consensus 1 m~~~--~~V~IVGaG~aGl~~A~~L~~~g-~~v~ 31 (375)
T PRK06847 1 MAAV--KKVLIVGGGIGGLSAAIALRRAG-IAVD 31 (375)
T ss_pred CCCc--ceEEEECCCHHHHHHHHHHHhCC-CCEE
Confidence 7754 78999999999999998887753 4543
No 356
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=74.61 E-value=9.5 Score=34.71 Aligned_cols=23 Identities=17% Similarity=0.322 Sum_probs=19.7
Q ss_pred eEEEEEec-CHHHHHHHHHHHcCC
Q 022491 7 IKIGINGF-GRIGRLVARVALQRD 29 (296)
Q Consensus 7 i~vgI~G~-G~iG~~l~r~l~~~p 29 (296)
.+|+|+|. |.+|+-++.+|.+..
T Consensus 159 k~v~vIG~S~ivG~Pla~lL~~~g 182 (284)
T PRK14179 159 KHAVVIGRSNIVGKPMAQLLLDKN 182 (284)
T ss_pred CEEEEECCCCcCcHHHHHHHHHCC
Confidence 57999999 999999999888653
No 357
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=74.55 E-value=7.7 Score=35.26 Aligned_cols=23 Identities=17% Similarity=0.228 Sum_probs=19.6
Q ss_pred eEEEEEec-CHHHHHHHHHHHcCC
Q 022491 7 IKIGINGF-GRIGRLVARVALQRD 29 (296)
Q Consensus 7 i~vgI~G~-G~iG~~l~r~l~~~p 29 (296)
.+|.|+|+ |.+|+-++.+|.++.
T Consensus 160 k~vvViG~gg~vGkpia~~L~~~g 183 (283)
T PRK14192 160 KHAVVVGRSAILGKPMAMMLLNAN 183 (283)
T ss_pred CEEEEECCcHHHHHHHHHHHHhCC
Confidence 58999999 569999999988765
No 358
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=74.45 E-value=5.4 Score=30.34 Aligned_cols=29 Identities=31% Similarity=0.640 Sum_probs=23.0
Q ss_pred EEEEecCHHHHHHHHHHHcCCCcEEEEEec
Q 022491 9 IGINGFGRIGRLVARVALQRDDVELVAVND 38 (296)
Q Consensus 9 vgI~G~G~iG~~l~r~l~~~p~~elv~i~~ 38 (296)
|-|+|+|++|+++++.|.+ ...+++.|..
T Consensus 1 vvI~G~g~~~~~i~~~L~~-~~~~vvvid~ 29 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKE-GGIDVVVIDR 29 (116)
T ss_dssp EEEES-SHHHHHHHHHHHH-TTSEEEEEES
T ss_pred eEEEcCCHHHHHHHHHHHh-CCCEEEEEEC
Confidence 4689999999999999998 4467777753
No 359
>PRK08223 hypothetical protein; Validated
Probab=73.97 E-value=5.7 Score=36.20 Aligned_cols=23 Identities=17% Similarity=0.371 Sum_probs=20.1
Q ss_pred eEEEEEecCHHHHHHHHHHHcCC
Q 022491 7 IKIGINGFGRIGRLVARVALQRD 29 (296)
Q Consensus 7 i~vgI~G~G~iG~~l~r~l~~~p 29 (296)
-||.|+|+|-+|.+++..|..-.
T Consensus 28 s~VlIvG~GGLGs~va~~LA~aG 50 (287)
T PRK08223 28 SRVAIAGLGGVGGIHLLTLARLG 50 (287)
T ss_pred CCEEEECCCHHHHHHHHHHHHhC
Confidence 58999999999999999888754
No 360
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=73.87 E-value=4.7 Score=36.88 Aligned_cols=30 Identities=20% Similarity=0.242 Sum_probs=22.8
Q ss_pred eeEEEEEecCHHHHHHHHHHHcCCCcEEEEE
Q 022491 6 KIKIGINGFGRIGRLVARVALQRDDVELVAV 36 (296)
Q Consensus 6 ~i~vgI~G~G~iG~~l~r~l~~~p~~elv~i 36 (296)
++||+|+|+|.+|.-+.-.|.+.. .++..+
T Consensus 2 ~m~I~IiGaGaiG~~~a~~L~~~G-~~V~lv 31 (305)
T PRK05708 2 SMTWHILGAGSLGSLWACRLARAG-LPVRLI 31 (305)
T ss_pred CceEEEECCCHHHHHHHHHHHhCC-CCeEEE
Confidence 468999999999999888887653 344444
No 361
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=73.71 E-value=20 Score=34.73 Aligned_cols=87 Identities=24% Similarity=0.210 Sum_probs=51.4
Q ss_pred eEEEEEecCHHHHH-HHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEecC
Q 022491 7 IKIGINGFGRIGRL-VARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFR 85 (296)
Q Consensus 7 i~vgI~G~G~iG~~-l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~~ 85 (296)
.||.|+|+|..|.. ++|+|.++. .++ .++|..... .... | .+ .| + .++...
T Consensus 8 ~~v~viG~G~sG~s~~a~~L~~~G-~~V-~~~D~~~~~-~~~~-l--~~-------------~g--i-------~~~~~~ 59 (461)
T PRK00421 8 KRIHFVGIGGIGMSGLAEVLLNLG-YKV-SGSDLKESA-VTQR-L--LE-------------LG--A-------IIFIGH 59 (461)
T ss_pred CEEEEEEEchhhHHHHHHHHHhCC-CeE-EEECCCCCh-HHHH-H--HH-------------CC--C-------EEeCCC
Confidence 57999999999999 799998876 444 445541111 1111 1 00 01 1 121111
Q ss_pred CCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEee
Q 022491 86 NPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVIS 127 (296)
Q Consensus 86 d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid 127 (296)
+++.+ .++|+||-+-+-.........+.+.|+ .|++
T Consensus 60 ~~~~~----~~~d~vv~spgi~~~~~~~~~a~~~~i--~i~~ 95 (461)
T PRK00421 60 DAENI----KDADVVVYSSAIPDDNPELVAARELGI--PVVR 95 (461)
T ss_pred CHHHC----CCCCEEEECCCCCCCCHHHHHHHHCCC--cEEe
Confidence 23333 368999888776666666777778887 4553
No 362
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=73.61 E-value=4.7 Score=37.35 Aligned_cols=30 Identities=20% Similarity=0.247 Sum_probs=26.1
Q ss_pred eEEEEEec-CHHHHHHHHHHHcCCCcEEEEEe
Q 022491 7 IKIGINGF-GRIGRLVARVALQRDDVELVAVN 37 (296)
Q Consensus 7 i~vgI~G~-G~iG~~l~r~l~~~p~~elv~i~ 37 (296)
+||-|.|+ |++|..|++.|.++. .+++++.
T Consensus 16 ~~vlVtGatGfiG~~lv~~L~~~g-~~V~~~d 46 (348)
T PRK15181 16 KRWLITGVAGFIGSGLLEELLFLN-QTVIGLD 46 (348)
T ss_pred CEEEEECCccHHHHHHHHHHHHCC-CEEEEEe
Confidence 68999999 999999999999875 5777774
No 363
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=73.59 E-value=8.4 Score=34.37 Aligned_cols=28 Identities=25% Similarity=0.331 Sum_probs=22.0
Q ss_pred EEEEEecCHHHHHHHHHHHcCCCcE-EEEE
Q 022491 8 KIGINGFGRIGRLVARVALQRDDVE-LVAV 36 (296)
Q Consensus 8 ~vgI~G~G~iG~~l~r~l~~~p~~e-lv~i 36 (296)
+|.|+|+|-+|...++++.... ++ ++.+
T Consensus 123 ~VlV~G~G~vG~~~~~~ak~~G-~~~Vi~~ 151 (280)
T TIGR03366 123 RVLVVGAGMLGLTAAAAAAAAG-AARVVAA 151 (280)
T ss_pred EEEEECCCHHHHHHHHHHHHcC-CCEEEEE
Confidence 6899999999999988877764 54 5554
No 364
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=73.38 E-value=23 Score=32.76 Aligned_cols=29 Identities=21% Similarity=0.304 Sum_probs=22.5
Q ss_pred eEEEEEecCHHHHHHHHHHHcCCCcE-EEEE
Q 022491 7 IKIGINGFGRIGRLVARVALQRDDVE-LVAV 36 (296)
Q Consensus 7 i~vgI~G~G~iG~~l~r~l~~~p~~e-lv~i 36 (296)
-+|.|+|+|-+|..+++++.... .+ ++++
T Consensus 178 ~~VlV~G~g~vG~~a~~~ak~~G-~~~Vi~~ 207 (358)
T TIGR03451 178 DSVAVIGCGGVGDAAIAGAALAG-ASKIIAV 207 (358)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC-CCeEEEE
Confidence 37899999999999988877664 54 5555
No 365
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=73.28 E-value=23 Score=34.48 Aligned_cols=90 Identities=19% Similarity=0.169 Sum_probs=51.3
Q ss_pred eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEecCC
Q 022491 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRN 86 (296)
Q Consensus 7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~~d 86 (296)
.||+|+|+|..|+..+|+|.++. .++ .+.|. .+... ...... +. . .+ . .++...+
T Consensus 9 ~~v~v~G~G~sG~~~~~~l~~~g-~~v-~~~d~-~~~~~---~~~~~~----l~-~-----~~--~-------~~~~~~~ 63 (468)
T PRK04690 9 RRVALWGWGREGRAAYRALRAHL-PAQ-ALTLF-CNAVE---AREVGA----LA-D-----AA--L-------LVETEAS 63 (468)
T ss_pred CEEEEEccchhhHHHHHHHHHcC-CEE-EEEcC-CCccc---chHHHH----Hh-h-----cC--E-------EEeCCCC
Confidence 58999999999999999999875 443 34453 11110 000000 11 0 00 0 0111112
Q ss_pred CCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEee
Q 022491 87 PEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVIS 127 (296)
Q Consensus 87 ~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid 127 (296)
++.+ .++|+||-+.+-..+.+....+.+.|+ .|++
T Consensus 64 ~~~~----~~~d~vV~SpgI~~~~p~~~~a~~~~i--~i~~ 98 (468)
T PRK04690 64 AQRL----AAFDVVVKSPGISPYRPEALAAAARGT--PFIG 98 (468)
T ss_pred hHHc----cCCCEEEECCCCCCCCHHHHHHHHcCC--cEEE
Confidence 2323 478999888777666677777788887 4553
No 366
>PLN02778 3,5-epimerase/4-reductase
Probab=73.26 E-value=3.9 Score=37.15 Aligned_cols=29 Identities=24% Similarity=0.479 Sum_probs=24.2
Q ss_pred CeeEEEEEec-CHHHHHHHHHHHcCCCcEEE
Q 022491 5 KKIKIGINGF-GRIGRLVARVALQRDDVELV 34 (296)
Q Consensus 5 m~i~vgI~G~-G~iG~~l~r~l~~~p~~elv 34 (296)
+++||-|.|+ |++|+.|++.|.++. .+++
T Consensus 8 ~~~kiLVtG~tGfiG~~l~~~L~~~g-~~V~ 37 (298)
T PLN02778 8 ATLKFLIYGKTGWIGGLLGKLCQEQG-IDFH 37 (298)
T ss_pred CCCeEEEECCCCHHHHHHHHHHHhCC-CEEE
Confidence 4689999999 999999999998875 3443
No 367
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=73.20 E-value=4.5 Score=38.40 Aligned_cols=27 Identities=19% Similarity=0.287 Sum_probs=22.7
Q ss_pred eEEEEEecCHHHHHHHHHHHcCCCcEE
Q 022491 7 IKIGINGFGRIGRLVARVALQRDDVEL 33 (296)
Q Consensus 7 i~vgI~G~G~iG~~l~r~l~~~p~~el 33 (296)
+||.|+|+|..|..++..|.+++.+++
T Consensus 1 ~~V~IiGgGiaGla~A~~L~~~g~~~v 27 (414)
T TIGR03219 1 LRVAIIGGGIAGVALALNLCKHSHLNV 27 (414)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCCCE
Confidence 589999999999999999988764443
No 368
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=72.76 E-value=4.9 Score=39.85 Aligned_cols=34 Identities=29% Similarity=0.372 Sum_probs=31.3
Q ss_pred eeEEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491 6 KIKIGINGFGRIGRLVARVALQRDDVELVAVNDP 39 (296)
Q Consensus 6 ~i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~ 39 (296)
+.|+-|+|+|..|..++|.+..+|+...|++-|.
T Consensus 116 ~~r~lIiGAG~ag~~l~r~~~~~~~~~pV~fiDd 149 (588)
T COG1086 116 RIRLLIIGAGSAGDLLLRALRRDPEYTPVAFLDD 149 (588)
T ss_pred CCceEEEcCchHHHHHHHHHHhCCCcceEEEECC
Confidence 3789999999999999999999999999998876
No 369
>PLN02240 UDP-glucose 4-epimerase
Probab=72.72 E-value=6 Score=36.33 Aligned_cols=35 Identities=23% Similarity=0.210 Sum_probs=27.9
Q ss_pred CCCCCeeEEEEEec-CHHHHHHHHHHHcCCCcEEEEEe
Q 022491 1 MAGDKKIKIGINGF-GRIGRLVARVALQRDDVELVAVN 37 (296)
Q Consensus 1 m~~~m~i~vgI~G~-G~iG~~l~r~l~~~p~~elv~i~ 37 (296)
|+. |+.||-|.|+ |.+|+.+++.|.+.. .+|+++.
T Consensus 1 ~~~-~~~~vlItGatG~iG~~l~~~L~~~g-~~V~~~~ 36 (352)
T PLN02240 1 MSL-MGRTILVTGGAGYIGSHTVLQLLLAG-YKVVVID 36 (352)
T ss_pred CCC-CCCEEEEECCCChHHHHHHHHHHHCC-CEEEEEe
Confidence 553 3378999999 999999999998775 5777764
No 370
>PRK05086 malate dehydrogenase; Provisional
Probab=72.62 E-value=5.8 Score=36.52 Aligned_cols=33 Identities=21% Similarity=0.274 Sum_probs=24.6
Q ss_pred eEEEEEec-CHHHHHHHHHHHc-CCCcEEEEEecC
Q 022491 7 IKIGINGF-GRIGRLVARVALQ-RDDVELVAVNDP 39 (296)
Q Consensus 7 i~vgI~G~-G~iG~~l~r~l~~-~p~~elv~i~~~ 39 (296)
+||+|+|+ |.+|..++..|.. .+....+.+.++
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~ 35 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDI 35 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEec
Confidence 48999999 9999999988854 455444455454
No 371
>PRK12827 short chain dehydrogenase; Provisional
Probab=72.44 E-value=6.4 Score=33.87 Aligned_cols=36 Identities=22% Similarity=0.350 Sum_probs=27.8
Q ss_pred CCCCCeeEEEEEec-CHHHHHHHHHHHcCCCcEEEEEe
Q 022491 1 MAGDKKIKIGINGF-GRIGRLVARVALQRDDVELVAVN 37 (296)
Q Consensus 1 m~~~m~i~vgI~G~-G~iG~~l~r~l~~~p~~elv~i~ 37 (296)
|+..+.+++-|.|+ |.+|+.+++.|.++. .+++.+.
T Consensus 1 ~~~~~~~~ilItGasg~iG~~la~~l~~~g-~~v~~~~ 37 (249)
T PRK12827 1 MASLDSRRVLITGGSGGLGRAIAVRLAADG-ADVIVLD 37 (249)
T ss_pred CCCcCCCEEEEECCCChHHHHHHHHHHHCC-CeEEEEc
Confidence 55444468999999 999999999999875 4665553
No 372
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=72.37 E-value=10 Score=37.64 Aligned_cols=116 Identities=20% Similarity=0.235 Sum_probs=61.5
Q ss_pred eEEEEEec-CHHHHHHHHHHHcCCCcEEEEEecCCCChh-hhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEec
Q 022491 7 IKIGINGF-GRIGRLVARVALQRDDVELVAVNDPFISTD-YMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGF 84 (296)
Q Consensus 7 i~vgI~G~-G~iG~~l~r~l~~~p~~elv~i~~~~~~~~-~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~ 84 (296)
.+|=|-|+ |-||.++.|.+.+.. .+-+-+.+++.... .+... +...+++.. +.+ -+-..
T Consensus 251 K~vLVTGagGSiGsel~~qil~~~-p~~i~l~~~~E~~~~~i~~e--l~~~~~~~~-----------~~~-----~igdV 311 (588)
T COG1086 251 KTVLVTGGGGSIGSELCRQILKFN-PKEIILFSRDEYKLYLIDME--LREKFPELK-----------LRF-----YIGDV 311 (588)
T ss_pred CEEEEeCCCCcHHHHHHHHHHhcC-CCEEEEecCchHHHHHHHHH--HHhhCCCcc-----------eEE-----Eeccc
Confidence 57999999 999999999887753 23333444422211 11111 111111100 110 00011
Q ss_pred CCCCCCC--cccCCCcEEEEccCC------------------ccCHHHHHHHHHCCCCeEE-eeCCCCCCCeEEcccC
Q 022491 85 RNPEEIP--WAKTGAEYVVESTGV------------------FTDKDKAAAHLKGGAKKVV-ISAPSKDAPMFVVGVN 141 (296)
Q Consensus 85 ~d~~~i~--~~~~~~DvV~~at~~------------------~~~~~~~~~~l~~G~k~vv-id~~~~d~~~~v~gvn 141 (296)
+|.+.+. ....++|+||.|.-. .-+...++.+.+.|++++| ||..-+-.|+=+||..
T Consensus 312 rD~~~~~~~~~~~kvd~VfHAAA~KHVPl~E~nP~Eai~tNV~GT~nv~~aa~~~~V~~~V~iSTDKAV~PtNvmGaT 389 (588)
T COG1086 312 RDRDRVERAMEGHKVDIVFHAAALKHVPLVEYNPEEAIKTNVLGTENVAEAAIKNGVKKFVLISTDKAVNPTNVMGAT 389 (588)
T ss_pred ccHHHHHHHHhcCCCceEEEhhhhccCcchhcCHHHHHHHhhHhHHHHHHHHHHhCCCEEEEEecCcccCCchHhhHH
Confidence 1322221 112359999998654 2234556788899998766 4433223678888886
No 373
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=72.30 E-value=8.5 Score=34.84 Aligned_cols=32 Identities=16% Similarity=0.079 Sum_probs=24.4
Q ss_pred eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP 39 (296)
Q Consensus 7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~ 39 (296)
.++.|+|+|-+|+.++..|.... ++-+.|..+
T Consensus 126 k~vlvlGaGGaarai~~aL~~~G-~~~i~I~nR 157 (282)
T TIGR01809 126 FRGLVIGAGGTSRAAVYALASLG-VTDITVINR 157 (282)
T ss_pred ceEEEEcCcHHHHHHHHHHHHcC-CCeEEEEeC
Confidence 57999999999999999998775 433444444
No 374
>PRK06185 hypothetical protein; Provisional
Probab=72.29 E-value=5 Score=37.81 Aligned_cols=35 Identities=20% Similarity=0.261 Sum_probs=27.1
Q ss_pred CCCCCeeEEEEEecCHHHHHHHHHHHcCCCcEEEEE
Q 022491 1 MAGDKKIKIGINGFGRIGRLVARVALQRDDVELVAV 36 (296)
Q Consensus 1 m~~~m~i~vgI~G~G~iG~~l~r~l~~~p~~elv~i 36 (296)
|.+.|...|.|+|+|.+|..++..|.++. ++++-+
T Consensus 1 ~~~~~~~dV~IvGgG~~Gl~~A~~La~~G-~~v~li 35 (407)
T PRK06185 1 MAEVETTDCCIVGGGPAGMMLGLLLARAG-VDVTVL 35 (407)
T ss_pred CCccccccEEEECCCHHHHHHHHHHHhCC-CcEEEE
Confidence 55556689999999999999998888764 555444
No 375
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=71.97 E-value=19 Score=29.13 Aligned_cols=30 Identities=27% Similarity=0.288 Sum_probs=22.0
Q ss_pred CCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeC
Q 022491 95 TGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISA 128 (296)
Q Consensus 95 ~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~ 128 (296)
.+.|+|+.|+|.. .-.-...++.|+ +|+|-
T Consensus 70 ~~ADIVvsAtg~~--~~i~~~~ikpGa--~Vidv 99 (140)
T cd05212 70 HDADVVVVGSPKP--EKVPTEWIKPGA--TVINC 99 (140)
T ss_pred hhCCEEEEecCCC--CccCHHHcCCCC--EEEEc
Confidence 4789999999975 223355678898 78864
No 376
>KOG1494 consensus NAD-dependent malate dehydrogenase [Energy production and conversion]
Probab=71.81 E-value=4.6 Score=36.63 Aligned_cols=34 Identities=24% Similarity=0.286 Sum_probs=29.5
Q ss_pred eeEEEEEec-CHHHHHHHHHHHcCCCcEEEEEecC
Q 022491 6 KIKIGINGF-GRIGRLVARVALQRDDVELVAVNDP 39 (296)
Q Consensus 6 ~i~vgI~G~-G~iG~~l~r~l~~~p~~elv~i~~~ 39 (296)
..||+|.|+ |=||+-|--+|...|.+...++.|.
T Consensus 28 ~~KVAvlGAaGGIGQPLSLLlK~np~Vs~LaLYDi 62 (345)
T KOG1494|consen 28 GLKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDI 62 (345)
T ss_pred cceEEEEecCCccCccHHHHHhcCcccceeeeeec
Confidence 389999999 9999999877888898887888776
No 377
>PRK08163 salicylate hydroxylase; Provisional
Probab=71.65 E-value=5.9 Score=37.17 Aligned_cols=30 Identities=20% Similarity=0.145 Sum_probs=23.9
Q ss_pred CCCCCeeEEEEEecCHHHHHHHHHHHcCCCcEE
Q 022491 1 MAGDKKIKIGINGFGRIGRLVARVALQRDDVEL 33 (296)
Q Consensus 1 m~~~m~i~vgI~G~G~iG~~l~r~l~~~p~~el 33 (296)
|.. ..+|.|+|+|.+|..++..|.++. +++
T Consensus 1 ~~~--~~~V~IvGaGiaGl~~A~~L~~~g-~~v 30 (396)
T PRK08163 1 MTK--VTPVLIVGGGIGGLAAALALARQG-IKV 30 (396)
T ss_pred CCC--CCeEEEECCcHHHHHHHHHHHhCC-CcE
Confidence 553 379999999999999998887764 444
No 378
>KOG0455 consensus Homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=71.51 E-value=4.9 Score=35.85 Aligned_cols=102 Identities=16% Similarity=0.270 Sum_probs=54.3
Q ss_pred eeEEEEEecCHHHHHHHHHHHc----CC----CcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCE
Q 022491 6 KIKIGINGFGRIGRLVARVALQ----RD----DVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEK 77 (296)
Q Consensus 6 ~i~vgI~G~G~iG~~l~r~l~~----~p----~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~ 77 (296)
+++|+++|+|-+|++++..+.. |. .++++++++..+..-.+-++ -......|. .....+++..+..+
T Consensus 3 ~vnVa~~G~G~vG~~lL~qi~~~~s~~~~~tv~~nvv~v~~~e~~~~skD~~--p~nl~sewk-~~L~~st~~alsLd-- 77 (364)
T KOG0455|consen 3 KVNVALMGCGGVGRHLLQQIVSCRSLHAKMTVHINVVGVCDSESLVASKDVL--PENLNSEWK-SELIKSTGSALSLD-- 77 (364)
T ss_pred cccEEEEeccchHHHHHHHHHHHhhhhccCceEEEEEEEecccccccccccC--hhhhchHHH-HHHHHhcCCcccHH--
Confidence 4789999999999999998753 22 37889998752221000000 000001111 11000111111000
Q ss_pred EEEEEecCCC-CCCCcccCCCcEEEEccCCccCHHHHHHHHHCCC
Q 022491 78 PVAVFGFRNP-EEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGA 121 (296)
Q Consensus 78 ~i~~~~~~d~-~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~ 121 (296)
+. ..+ ......=++++||.+....+...++++.|+
T Consensus 78 --------aLia~L-~~sp~p~ilVDntaS~~ia~~y~Kfv~~gi 113 (364)
T KOG0455|consen 78 --------ALIAKL-LGSPTPLILVDNTASMEIAEIYMKFVDLGI 113 (364)
T ss_pred --------HHHHHH-cCCCCceEEEecccHHHHHHHHHHHHhcCc
Confidence 00 001 111334588999998888888889999998
No 379
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=71.31 E-value=15 Score=34.07 Aligned_cols=31 Identities=19% Similarity=0.450 Sum_probs=23.7
Q ss_pred eEEEEEecCHHHHHHHHHHHcCCCcEEEEEec
Q 022491 7 IKIGINGFGRIGRLVARVALQRDDVELVAVND 38 (296)
Q Consensus 7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~ 38 (296)
-+|.|+|.|-+|..+++++.... ++++.+.+
T Consensus 182 ~~vlV~G~G~vG~~av~~Ak~~G-~~vi~~~~ 212 (357)
T PLN02514 182 LRGGILGLGGVGHMGVKIAKAMG-HHVTVISS 212 (357)
T ss_pred CeEEEEcccHHHHHHHHHHHHCC-CeEEEEeC
Confidence 36889999999999988877664 56666543
No 380
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=71.22 E-value=8.4 Score=36.43 Aligned_cols=30 Identities=10% Similarity=0.128 Sum_probs=23.5
Q ss_pred eEEEEEecCHHHHHHHHHHHcCCCcEEEEE
Q 022491 7 IKIGINGFGRIGRLVARVALQRDDVELVAV 36 (296)
Q Consensus 7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i 36 (296)
.||.|+|+|-+|.+++..|....--++.-+
T Consensus 42 ~~VliiG~GglG~~v~~~La~~Gvg~i~iv 71 (370)
T PRK05600 42 ARVLVIGAGGLGCPAMQSLASAGVGTITLI 71 (370)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCEEEEE
Confidence 589999999999999999987653344333
No 381
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=70.83 E-value=5.4 Score=35.28 Aligned_cols=32 Identities=19% Similarity=0.229 Sum_probs=24.1
Q ss_pred eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP 39 (296)
Q Consensus 7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~ 39 (296)
.||.|+|+|-+|.+++..|.... +.-..+.|.
T Consensus 25 ~~VlvvG~GglGs~va~~La~~G-vg~i~lvD~ 56 (240)
T TIGR02355 25 SRVLIVGLGGLGCAASQYLAAAG-VGNLTLLDF 56 (240)
T ss_pred CcEEEECcCHHHHHHHHHHHHcC-CCEEEEEeC
Confidence 58999999999999999998764 333334343
No 382
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=70.77 E-value=7.3 Score=33.56 Aligned_cols=36 Identities=19% Similarity=0.175 Sum_probs=27.4
Q ss_pred CCCCCeeEEEEEec-CHHHHHHHHHHHcCCCcEEEEEe
Q 022491 1 MAGDKKIKIGINGF-GRIGRLVARVALQRDDVELVAVN 37 (296)
Q Consensus 1 m~~~m~i~vgI~G~-G~iG~~l~r~l~~~p~~elv~i~ 37 (296)
|...|..++-|.|+ |.+|+.+++.|.++. .+++.+.
T Consensus 1 ~~~~~~~~ilItGasg~iG~~l~~~l~~~g-~~V~~~~ 37 (251)
T PRK12826 1 TRDLEGRVALVTGAARGIGRAIAVRLAADG-AEVIVVD 37 (251)
T ss_pred CCCCCCCEEEEcCCCCcHHHHHHHHHHHCC-CEEEEEe
Confidence 34333468999999 999999999998875 5666653
No 383
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=70.53 E-value=6.8 Score=34.30 Aligned_cols=30 Identities=20% Similarity=0.284 Sum_probs=25.0
Q ss_pred eEEEEEec-CHHHHHHHHHHHcCCCcEEEEEe
Q 022491 7 IKIGINGF-GRIGRLVARVALQRDDVELVAVN 37 (296)
Q Consensus 7 i~vgI~G~-G~iG~~l~r~l~~~p~~elv~i~ 37 (296)
+||.|.|+ |.+|+.+++.|.++. .++.++.
T Consensus 18 ~~ilItGasG~iG~~l~~~L~~~g-~~V~~~~ 48 (251)
T PLN00141 18 KTVFVAGATGRTGKRIVEQLLAKG-FAVKAGV 48 (251)
T ss_pred CeEEEECCCcHHHHHHHHHHHhCC-CEEEEEe
Confidence 68999999 999999999998864 5666554
No 384
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=70.52 E-value=21 Score=30.43 Aligned_cols=32 Identities=16% Similarity=0.268 Sum_probs=25.1
Q ss_pred eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP 39 (296)
Q Consensus 7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~ 39 (296)
.||.|+|+|-+|.++++.|.... +.-+.+.|.
T Consensus 22 s~VlIiG~gglG~evak~La~~G-Vg~i~lvD~ 53 (197)
T cd01492 22 ARILLIGLKGLGAEIAKNLVLSG-IGSLTILDD 53 (197)
T ss_pred CcEEEEcCCHHHHHHHHHHHHcC-CCEEEEEEC
Confidence 58999999889999999998765 554455554
No 385
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=70.37 E-value=9.8 Score=30.07 Aligned_cols=32 Identities=22% Similarity=0.256 Sum_probs=23.6
Q ss_pred eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP 39 (296)
Q Consensus 7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~ 39 (296)
.||.|+|+|-+|.++++.|....--++ .|.|.
T Consensus 3 ~~v~iiG~G~vGs~va~~L~~~Gv~~i-~lvD~ 34 (135)
T PF00899_consen 3 KRVLIIGAGGVGSEVAKNLARSGVGKI-TLVDD 34 (135)
T ss_dssp -EEEEESTSHHHHHHHHHHHHHTTSEE-EEEES
T ss_pred CEEEEECcCHHHHHHHHHHHHhCCCce-eecCC
Confidence 589999999999999999987652233 33343
No 386
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=70.19 E-value=10 Score=37.10 Aligned_cols=29 Identities=21% Similarity=0.322 Sum_probs=24.0
Q ss_pred eEEEEEecCHHHHHHHHHHHcCCCcEEEEE
Q 022491 7 IKIGINGFGRIGRLVARVALQRDDVELVAV 36 (296)
Q Consensus 7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i 36 (296)
.+++|+|+|-+|+.++..|.... .++...
T Consensus 333 k~vlIiGaGgiG~aia~~L~~~G-~~V~i~ 361 (477)
T PRK09310 333 QHVAIVGAGGAAKAIATTLARAG-AELLIF 361 (477)
T ss_pred CEEEEEcCcHHHHHHHHHHHHCC-CEEEEE
Confidence 57999999999999999998876 466544
No 387
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=70.11 E-value=8.7 Score=36.04 Aligned_cols=31 Identities=19% Similarity=0.262 Sum_probs=23.5
Q ss_pred eEEEEEecCHHHHHHHHHHHcCCCcEEEEEec
Q 022491 7 IKIGINGFGRIGRLVARVALQRDDVELVAVND 38 (296)
Q Consensus 7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~ 38 (296)
.||.|+|+|-+|.+++..|.... +.-..+.|
T Consensus 29 ~~VlivG~GGlGs~~a~~La~~G-vg~i~lvD 59 (355)
T PRK05597 29 AKVAVIGAGGLGSPALLYLAGAG-VGHITIID 59 (355)
T ss_pred CeEEEECCCHHHHHHHHHHHHcC-CCeEEEEe
Confidence 68999999999999999998654 33333334
No 388
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=70.07 E-value=5.8 Score=39.29 Aligned_cols=34 Identities=21% Similarity=0.248 Sum_probs=25.1
Q ss_pred CCCCeeEEEEEecCHHHHHHHHHHHcCCCcEEEEE
Q 022491 2 AGDKKIKIGINGFGRIGRLVARVALQRDDVELVAV 36 (296)
Q Consensus 2 ~~~m~i~vgI~G~G~iG~~l~r~l~~~p~~elv~i 36 (296)
..+++.+|.|+|+|.+|..++..|.++. ++++-+
T Consensus 19 ~~~~~~dVlIVGaGpaGl~lA~~L~~~G-~~v~vi 52 (547)
T PRK08132 19 DDPARHPVVVVGAGPVGLALAIDLAQQG-VPVVLL 52 (547)
T ss_pred CCCCcCCEEEECCCHHHHHHHHHHHhCC-CcEEEE
Confidence 3345578999999999999998887763 444333
No 389
>KOG2733 consensus Uncharacterized membrane protein [Function unknown]
Probab=70.03 E-value=4.4 Score=37.98 Aligned_cols=107 Identities=19% Similarity=0.218 Sum_probs=57.9
Q ss_pred eEEEEEec-CHHHHHHHHHHHcCCCcEE--EEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEe
Q 022491 7 IKIGINGF-GRIGRLVARVALQRDDVEL--VAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFG 83 (296)
Q Consensus 7 i~vgI~G~-G~iG~~l~r~l~~~p~~el--v~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~ 83 (296)
.-+-|.|| |++|+-+++-+.+...++. .+|+.+ +.+.+-..|+ .... ..+.+|. ...|-+..
T Consensus 6 yDvVIyGASGfTG~yivee~v~~~~~~~~slavAGR--n~~KL~~vL~--~~~~---------k~~~~ls--~~~i~i~D 70 (423)
T KOG2733|consen 6 YDVVIYGASGFTGKYIVEEAVSSQVFEGLSLAVAGR--NEKKLQEVLE--KVGE---------KTGTDLS--SSVILIAD 70 (423)
T ss_pred eeEEEEccccccceeeHHHHhhhhcccCceEEEecC--CHHHHHHHHH--HHhh---------ccCCCcc--cceEEEec
Confidence 67899999 9999999988776332322 244444 4433323221 1000 0111110 11222333
Q ss_pred cCCCCCCCcccCCCcEEEEccCCccC--HHHHHHHHHCCCCeEEeeC
Q 022491 84 FRNPEEIPWAKTGAEYVVESTGVFTD--KDKAAAHLKGGAKKVVISA 128 (296)
Q Consensus 84 ~~d~~~i~~~~~~~DvV~~at~~~~~--~~~~~~~l~~G~k~vvid~ 128 (296)
..|++.++-....+.+++.|.|.+.. ...++.+++.|+..+.||.
T Consensus 71 ~~n~~Sl~emak~~~vivN~vGPyR~hGE~VVkacienG~~~vDISG 117 (423)
T KOG2733|consen 71 SANEASLDEMAKQARVIVNCVGPYRFHGEPVVKACIENGTHHVDISG 117 (423)
T ss_pred CCCHHHHHHHHhhhEEEEeccccceecCcHHHHHHHHcCCceeccCC
Confidence 33444443224678999999997543 3456777788885555543
No 390
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=70.02 E-value=8.9 Score=34.58 Aligned_cols=23 Identities=22% Similarity=0.388 Sum_probs=20.7
Q ss_pred eEEEEEecCHHHHHHHHHHHcCC
Q 022491 7 IKIGINGFGRIGRLVARVALQRD 29 (296)
Q Consensus 7 i~vgI~G~G~iG~~l~r~l~~~p 29 (296)
.+|.|+|.|-+|.+++..|....
T Consensus 31 s~VlVvG~GGVGs~vae~Lar~G 53 (268)
T PRK15116 31 AHICVVGIGGVGSWAAEALARTG 53 (268)
T ss_pred CCEEEECcCHHHHHHHHHHHHcC
Confidence 58999999999999999998764
No 391
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=70.00 E-value=10 Score=33.39 Aligned_cols=30 Identities=17% Similarity=0.337 Sum_probs=23.4
Q ss_pred eEEEEEecCHHHHHHHHHHHcCCCcEEEEE
Q 022491 7 IKIGINGFGRIGRLVARVALQRDDVELVAV 36 (296)
Q Consensus 7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i 36 (296)
.||.|+|.|-+|.++++.|....-=++.-+
T Consensus 12 ~~VlVvG~GGvGs~va~~Lar~GVg~i~Lv 41 (231)
T cd00755 12 AHVAVVGLGGVGSWAAEALARSGVGKLTLI 41 (231)
T ss_pred CCEEEECCCHHHHHHHHHHHHcCCCEEEEE
Confidence 689999999999999999987652233333
No 392
>PRK10124 putative UDP-glucose lipid carrier transferase; Provisional
Probab=69.83 E-value=12 Score=36.38 Aligned_cols=33 Identities=15% Similarity=0.116 Sum_probs=28.8
Q ss_pred eEEEEEecCHHHHHHHHHHHcCCC--cEEEEEecC
Q 022491 7 IKIGINGFGRIGRLVARVALQRDD--VELVAVNDP 39 (296)
Q Consensus 7 i~vgI~G~G~iG~~l~r~l~~~p~--~elv~i~~~ 39 (296)
.|+.|+|+|..|+++++.+.++|+ .+++++.|.
T Consensus 144 rrVLIvGaG~~g~~l~~~L~~~~~~g~~vVGfiDd 178 (463)
T PRK10124 144 RMVAVAGDLPAGQMLLESFRNEPWLGFEVVGVYHD 178 (463)
T ss_pred CcEEEEECCHHHHHHHHHHhcCccCCeEEEEEEeC
Confidence 579999999999999999998874 788888764
No 393
>PRK15076 alpha-galactosidase; Provisional
Probab=69.58 E-value=3.9 Score=39.50 Aligned_cols=20 Identities=25% Similarity=0.039 Sum_probs=14.2
Q ss_pred eEEEEEecCHHHH--HHHHHHH
Q 022491 7 IKIGINGFGRIGR--LVARVAL 26 (296)
Q Consensus 7 i~vgI~G~G~iG~--~l~r~l~ 26 (296)
+||+|+|+|.+|. .+++.+.
T Consensus 2 ~KIaIIGaGsvg~~~~~~~~i~ 23 (431)
T PRK15076 2 PKITFIGAGSTVFTKNLLGDIL 23 (431)
T ss_pred cEEEEECCCHHHhHHHHHHHHh
Confidence 6899999999873 3334444
No 394
>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional
Probab=69.54 E-value=5.8 Score=35.92 Aligned_cols=27 Identities=26% Similarity=0.380 Sum_probs=22.7
Q ss_pred EEEEEec-CHHHHHHHHHHHcCCCcEEEEE
Q 022491 8 KIGINGF-GRIGRLVARVALQRDDVELVAV 36 (296)
Q Consensus 8 ~vgI~G~-G~iG~~l~r~l~~~p~~elv~i 36 (296)
||-|.|+ |++|+.+++.|.++. +++++
T Consensus 2 ~iLVtG~~GfiGs~l~~~L~~~g--~V~~~ 29 (299)
T PRK09987 2 NILLFGKTGQVGWELQRALAPLG--NLIAL 29 (299)
T ss_pred eEEEECCCCHHHHHHHHHhhccC--CEEEe
Confidence 7999999 999999999998876 44444
No 395
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=69.52 E-value=6 Score=38.20 Aligned_cols=24 Identities=21% Similarity=0.203 Sum_probs=21.3
Q ss_pred eeEEEEEecCHHHHHHHHHHHcCC
Q 022491 6 KIKIGINGFGRIGRLVARVALQRD 29 (296)
Q Consensus 6 ~i~vgI~G~G~iG~~l~r~l~~~p 29 (296)
+.+|.|+|+|.+|.+++..|.++.
T Consensus 2 ~~dVvVIGGGlAGleAAlaLAr~G 25 (436)
T PRK05335 2 MKPVNVIGAGLAGSEAAWQLAKRG 25 (436)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCC
Confidence 468999999999999999998765
No 396
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=69.47 E-value=4.7 Score=38.31 Aligned_cols=31 Identities=23% Similarity=0.404 Sum_probs=24.8
Q ss_pred CeeEEEEEecCHHHHHHHHHHHcCCCcEEEEE
Q 022491 5 KKIKIGINGFGRIGRLVARVALQRDDVELVAV 36 (296)
Q Consensus 5 m~i~vgI~G~G~iG~~l~r~l~~~p~~elv~i 36 (296)
|+.+|||+|.||+|.-++-....+ .+.++++
T Consensus 8 ~~~~I~ViGLGYVGLPlA~~fA~~-G~~ViG~ 38 (436)
T COG0677 8 MSATIGVIGLGYVGLPLAAAFASA-GFKVIGV 38 (436)
T ss_pred CceEEEEEccccccHHHHHHHHHc-CCceEeE
Confidence 347999999999999887776665 3777776
No 397
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=69.31 E-value=40 Score=32.27 Aligned_cols=31 Identities=29% Similarity=0.261 Sum_probs=24.2
Q ss_pred eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP 39 (296)
Q Consensus 7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~ 39 (296)
.+|.|+|.|..|+..+++|.++. .++.+ .|.
T Consensus 7 ~~i~v~G~G~sG~s~~~~l~~~G-~~v~~-~D~ 37 (438)
T PRK03806 7 KKVVIIGLGLTGLSCVDFFLARG-VTPRV-IDT 37 (438)
T ss_pred CEEEEEeeCHHHHHHHHHHHHCC-CeEEE-EcC
Confidence 57999999999999999888775 45433 443
No 398
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=69.13 E-value=7.1 Score=36.15 Aligned_cols=31 Identities=32% Similarity=0.355 Sum_probs=24.7
Q ss_pred eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP 39 (296)
Q Consensus 7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~ 39 (296)
.||||+|+|.+|..++..+..+. +++.. .|+
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG-~~V~l-~D~ 38 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHG-LDVVA-WDP 38 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCC-CeEEE-EeC
Confidence 57999999999999999988764 55544 344
No 399
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=69.05 E-value=16 Score=34.35 Aligned_cols=30 Identities=17% Similarity=0.591 Sum_probs=23.5
Q ss_pred eEEEEEecCHHHHHHHHHHHcCCCcEEEEEe
Q 022491 7 IKIGINGFGRIGRLVARVALQRDDVELVAVN 37 (296)
Q Consensus 7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~ 37 (296)
-+|.|.|+|.+|..+++++.... .+++.+.
T Consensus 180 ~~VlV~G~G~vG~~avq~Ak~~G-a~Vi~~~ 209 (375)
T PLN02178 180 KRLGVNGLGGLGHIAVKIGKAFG-LRVTVIS 209 (375)
T ss_pred CEEEEEcccHHHHHHHHHHHHcC-CeEEEEe
Confidence 36889999999999988887765 5666654
No 400
>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related. They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C ....
Probab=68.82 E-value=9.1 Score=33.98 Aligned_cols=32 Identities=34% Similarity=0.623 Sum_probs=28.8
Q ss_pred eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP 39 (296)
Q Consensus 7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~ 39 (296)
.||+|=|+|.+|+.+++.|.+.. ..+++|.|.
T Consensus 33 ~~v~IqGfG~VG~~~a~~l~~~G-a~vv~vsD~ 64 (244)
T PF00208_consen 33 KRVAIQGFGNVGSHAARFLAELG-AKVVAVSDS 64 (244)
T ss_dssp CEEEEEESSHHHHHHHHHHHHTT-EEEEEEEES
T ss_pred CEEEEECCCHHHHHHHHHHHHcC-CEEEEEecC
Confidence 68999999999999999999884 899999764
No 401
>KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism]
Probab=68.79 E-value=5.9 Score=36.28 Aligned_cols=34 Identities=24% Similarity=0.299 Sum_probs=25.9
Q ss_pred eeEEEEEecCHHHHHHHHHHHc------CCCcEEEEEecC
Q 022491 6 KIKIGINGFGRIGRLVARVALQ------RDDVELVAVNDP 39 (296)
Q Consensus 6 ~i~vgI~G~G~iG~~l~r~l~~------~p~~elv~i~~~ 39 (296)
++||+|+|+|-||..-+-.+.+ -|..++..+.|+
T Consensus 3 ~~~iaViGaGVIGlsTA~~i~~~~~~~~ip~~~vtv~~Dr 42 (342)
T KOG3923|consen 3 TPRIAVIGAGVIGLSTALCILELYHSVLIPVAKVTVISDR 42 (342)
T ss_pred CccEEEEcCCeechhHHHHHHHhhhhccCCcceEEEecCC
Confidence 4799999999999887755544 466777777666
No 402
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=68.60 E-value=7 Score=39.82 Aligned_cols=31 Identities=26% Similarity=0.434 Sum_probs=27.2
Q ss_pred eEEEEEec-CHHHHHHHHHHHcCCCcEEEEEe
Q 022491 7 IKIGINGF-GRIGRLVARVALQRDDVELVAVN 37 (296)
Q Consensus 7 i~vgI~G~-G~iG~~l~r~l~~~p~~elv~i~ 37 (296)
+||-|.|+ |++|+.|++.|.++...+++++.
T Consensus 316 ~~VLVTGatGFIGs~Lv~~Ll~~~g~~V~~l~ 347 (660)
T PRK08125 316 TRVLILGVNGFIGNHLTERLLRDDNYEVYGLD 347 (660)
T ss_pred CEEEEECCCchHHHHHHHHHHhCCCcEEEEEe
Confidence 68999999 99999999999986557888875
No 403
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=68.59 E-value=45 Score=27.56 Aligned_cols=73 Identities=23% Similarity=0.174 Sum_probs=36.0
Q ss_pred CCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCCCC-C--CCeEEcccChhccCCCCCeEEc-C-CcchhhhHhHHHHH
Q 022491 95 TGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSK-D--APMFVVGVNEKEYKPELDIVSN-A-SCTTNCLAPLAKVI 169 (296)
Q Consensus 95 ~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~~~-d--~~~~v~gvn~~~l~~~~~iIs~-p-~C~~tal~~~l~~L 169 (296)
...|+||.|.|...- .-...++.|+ +|||.+.. . ...++--++.+.+++.+..+.. | |..+..++.+++-+
T Consensus 78 ~~ADIVVsa~G~~~~--i~~~~ik~ga--vVIDvG~~~~~~~~~~~GDv~~~~~~~~a~~itPvPgGVGplT~a~L~~N~ 153 (160)
T PF02882_consen 78 RRADIVVSAVGKPNL--IKADWIKPGA--VVIDVGINYVPGDGKLVGDVDFESVKEKASAITPVPGGVGPLTVAMLMKNL 153 (160)
T ss_dssp TTSSEEEE-SSSTT---B-GGGS-TTE--EEEE--CEEETTTTEEEESB-HHHHHTTCSEEE-SSSSCHHHHHHHHHHHH
T ss_pred eeccEEeeeeccccc--cccccccCCc--EEEecCCccccccceeeecccHHHhhccceEEeeCCCCccHHHHHHHHHHH
Confidence 467999999886322 2223457788 88987543 1 2334444554444433444432 2 45555566666655
Q ss_pred Hh
Q 022491 170 HD 171 (296)
Q Consensus 170 ~~ 171 (296)
.+
T Consensus 154 v~ 155 (160)
T PF02882_consen 154 VK 155 (160)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 404
>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.
Probab=68.49 E-value=6 Score=35.42 Aligned_cols=30 Identities=30% Similarity=0.490 Sum_probs=25.0
Q ss_pred EEEEEec-CHHHHHHHHHHHcCC-CcEEEEEe
Q 022491 8 KIGINGF-GRIGRLVARVALQRD-DVELVAVN 37 (296)
Q Consensus 8 ~vgI~G~-G~iG~~l~r~l~~~p-~~elv~i~ 37 (296)
||-|.|+ |.+|+.+++.|.++. ..+++.+.
T Consensus 1 ~ilItGatG~iG~~l~~~l~~~~~~~~v~~~~ 32 (317)
T TIGR01181 1 RILVTGGAGFIGSNFVRYILNEHPDAEVIVLD 32 (317)
T ss_pred CEEEEcCCchHHHHHHHHHHHhCCCCEEEEec
Confidence 5889999 999999999988764 57887764
No 405
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=68.25 E-value=34 Score=32.84 Aligned_cols=87 Identities=17% Similarity=0.249 Sum_probs=50.4
Q ss_pred eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEecCC
Q 022491 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRN 86 (296)
Q Consensus 7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~~d 86 (296)
.+|.|+|+|.+|..++|.|.++. .+++. .|.......... + ... . .| +.++....
T Consensus 6 ~~~~v~G~g~~G~~~a~~l~~~g-~~v~~-~d~~~~~~~~~~-l--~~~----~-------~g---------i~~~~g~~ 60 (445)
T PRK04308 6 KKILVAGLGGTGISMIAYLRKNG-AEVAA-YDAELKPERVAQ-I--GKM----F-------DG---------LVFYTGRL 60 (445)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC-CEEEE-EeCCCCchhHHH-H--hhc----c-------CC---------cEEEeCCC
Confidence 58999999999999999999887 55544 343122110001 0 000 0 01 11222111
Q ss_pred CCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCC
Q 022491 87 PEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGA 121 (296)
Q Consensus 87 ~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~ 121 (296)
.+.+ ..+.|+||-+.+-.........+.+.|.
T Consensus 61 ~~~~---~~~~d~vv~spgi~~~~p~~~~a~~~~i 92 (445)
T PRK04308 61 KDAL---DNGFDILALSPGISERQPDIEAFKQNGG 92 (445)
T ss_pred CHHH---HhCCCEEEECCCCCCCCHHHHHHHHcCC
Confidence 2221 1478999998887666677777778887
No 406
>PLN02740 Alcohol dehydrogenase-like
Probab=68.00 E-value=22 Score=33.31 Aligned_cols=28 Identities=32% Similarity=0.528 Sum_probs=22.8
Q ss_pred EEEEEecCHHHHHHHHHHHcCCCc-EEEEE
Q 022491 8 KIGINGFGRIGRLVARVALQRDDV-ELVAV 36 (296)
Q Consensus 8 ~vgI~G~G~iG~~l~r~l~~~p~~-elv~i 36 (296)
+|.|+|+|-+|..+++++.... . +++++
T Consensus 201 ~VlV~G~G~vG~~a~q~ak~~G-~~~Vi~~ 229 (381)
T PLN02740 201 SVAIFGLGAVGLAVAEGARARG-ASKIIGV 229 (381)
T ss_pred EEEEECCCHHHHHHHHHHHHCC-CCcEEEE
Confidence 6999999999999999888775 5 45555
No 407
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=67.98 E-value=7.3 Score=35.95 Aligned_cols=32 Identities=22% Similarity=0.297 Sum_probs=24.9
Q ss_pred EEEEEec-CHHHHHHHHHHHcCCCcEEEEEecC
Q 022491 8 KIGINGF-GRIGRLVARVALQRDDVELVAVNDP 39 (296)
Q Consensus 8 ~vgI~G~-G~iG~~l~r~l~~~p~~elv~i~~~ 39 (296)
||+|+|+ |.+|..++-.|...+.+.-..+.|.
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di 33 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDI 33 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecC
Confidence 6999999 9999999998887765544444454
No 408
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=67.79 E-value=7.2 Score=37.52 Aligned_cols=32 Identities=16% Similarity=0.127 Sum_probs=27.0
Q ss_pred eEEEEEecCHHHHHHHHHHHc-CCCcEEEEEec
Q 022491 7 IKIGINGFGRIGRLVARVALQ-RDDVELVAVND 38 (296)
Q Consensus 7 i~vgI~G~G~iG~~l~r~l~~-~p~~elv~i~~ 38 (296)
+||.|+|+|..|...++.|.+ .++.+|+-|..
T Consensus 2 ~~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~ 34 (438)
T PRK13512 2 PKIIVVGAVAGGATCASQIRRLDKESDIIIFEK 34 (438)
T ss_pred CeEEEECCcHHHHHHHHHHHhhCCCCCEEEEEC
Confidence 589999999999999999876 46788877754
No 409
>PF10100 DUF2338: Uncharacterized protein conserved in bacteria (DUF2338); InterPro: IPR016935 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=67.44 E-value=12 Score=35.62 Aligned_cols=31 Identities=16% Similarity=0.161 Sum_probs=24.9
Q ss_pred eEEEEEecCHHHHHHHHHHHcCCCcEEEEEe
Q 022491 7 IKIGINGFGRIGRLVARVALQRDDVELVAVN 37 (296)
Q Consensus 7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~ 37 (296)
-||=|+|.|.++-.++..+.+|-.-+|--++
T Consensus 2 ~~VLI~GtGPvAiQLAv~lk~~~~~~vGi~~ 32 (429)
T PF10100_consen 2 GNVLIVGTGPVAIQLAVILKKHGNCRVGIVG 32 (429)
T ss_pred CceEEEcCCHHHHHHHHHHHhccCceeeeec
Confidence 4789999999999999999988765554443
No 410
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=67.37 E-value=11 Score=27.33 Aligned_cols=32 Identities=19% Similarity=0.307 Sum_probs=24.2
Q ss_pred eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP 39 (296)
Q Consensus 7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~ 39 (296)
.+++|+|+|.+|+.+++.|.+.. ...+.+.++
T Consensus 24 ~~v~i~G~G~~g~~~a~~l~~~~-~~~v~v~~r 55 (86)
T cd05191 24 KTVVVLGAGEVGKGIAKLLADEG-GKKVVLCDR 55 (86)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC-CCEEEEEcC
Confidence 68999999999999999998863 233444443
No 411
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=66.41 E-value=8.1 Score=38.37 Aligned_cols=29 Identities=21% Similarity=0.366 Sum_probs=21.4
Q ss_pred eEEEEEecCHHHHHHHHHHHcCCCcEEEEE
Q 022491 7 IKIGINGFGRIGRLVARVALQRDDVELVAV 36 (296)
Q Consensus 7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i 36 (296)
.||+|||+|..|...++.|.+.. ++++..
T Consensus 2 krVaVIGaG~sGL~a~k~l~e~g-~~~~~f 30 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNLLEEG-LEVTCF 30 (531)
T ss_dssp -EEEEE--SHHHHHHHHHHHHTT--EEEEE
T ss_pred CEEEEECccHHHHHHHHHHHHCC-CCCeEE
Confidence 68999999999999999998764 777654
No 412
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=66.31 E-value=8.8 Score=36.33 Aligned_cols=32 Identities=19% Similarity=0.308 Sum_probs=27.2
Q ss_pred CeeEEEEEecCHHHHHHHHHHHcCCCcEEEEEe
Q 022491 5 KKIKIGINGFGRIGRLVARVALQRDDVELVAVN 37 (296)
Q Consensus 5 m~i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~ 37 (296)
|+..|.|+|+|..|...++.|.+.. ++++-+-
T Consensus 2 ~~~DVvIVGaGPAGs~aA~~la~~G-~~VlvlE 33 (396)
T COG0644 2 MEYDVVIVGAGPAGSSAARRLAKAG-LDVLVLE 33 (396)
T ss_pred ceeeEEEECCchHHHHHHHHHHHcC-CeEEEEe
Confidence 4578999999999999999999887 7766553
No 413
>TIGR03450 mycothiol_INO1 inositol 1-phosphate synthase, Actinobacterial type. This enzyme, inositol 1-phosphate synthase as found in Actinobacteria, produces an essential precursor for several different products, including mycothiol, which is a glutathione analog, and phosphatidylinositol, which is a phospholipid.
Probab=66.18 E-value=43 Score=31.26 Aligned_cols=31 Identities=13% Similarity=0.112 Sum_probs=24.6
Q ss_pred cccCCCcEEEEccCCccCH---HHHHHHHHCCCC
Q 022491 92 WAKTGAEYVVESTGVFTDK---DKAAAHLKGGAK 122 (296)
Q Consensus 92 ~~~~~~DvV~~at~~~~~~---~~~~~~l~~G~k 122 (296)
|++.++|+++.-+|.+..+ -++..++++|+.
T Consensus 119 lk~~~~dVlvnylPvGs~~A~~~YA~AAl~aG~a 152 (351)
T TIGR03450 119 LKDAKVDVLVSYLPVGSEEADKFYAQCAIDAGVA 152 (351)
T ss_pred HHhcCCCEEEECCccchHHHHHHHHHHHHHcCCc
Confidence 6678999999999987543 367778899993
No 414
>KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism]
Probab=66.13 E-value=4.6 Score=37.58 Aligned_cols=28 Identities=32% Similarity=0.509 Sum_probs=22.2
Q ss_pred eEEEEEecCHHHHHHHHHHHcCCCcEEEE
Q 022491 7 IKIGINGFGRIGRLVARVALQRDDVELVA 35 (296)
Q Consensus 7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~ 35 (296)
..+||+|+|+||+++.+.+..-. +.+++
T Consensus 147 KTLgvlG~GrIGseVA~r~k~~g-m~vI~ 174 (406)
T KOG0068|consen 147 KTLGVLGLGRIGSEVAVRAKAMG-MHVIG 174 (406)
T ss_pred cEEEEeecccchHHHHHHHHhcC-ceEEe
Confidence 46999999999999999887654 44443
No 415
>KOG1430 consensus C-3 sterol dehydrogenase/3-beta-hydroxysteroid dehydrogenase and related dehydrogenases [Lipid transport and metabolism; Amino acid transport and metabolism]
Probab=66.12 E-value=11 Score=35.60 Aligned_cols=33 Identities=18% Similarity=0.269 Sum_probs=25.8
Q ss_pred eEEEEEec-CHHHHHHHHHHHcCCCcEEEEEecC
Q 022491 7 IKIGINGF-GRIGRLVARVALQRDDVELVAVNDP 39 (296)
Q Consensus 7 i~vgI~G~-G~iG~~l~r~l~~~p~~elv~i~~~ 39 (296)
.++-|.|. |++|+.|++.|.++....-+-+.|.
T Consensus 5 ~~vlVtGG~GflG~hlv~~L~~~~~~~~irv~D~ 38 (361)
T KOG1430|consen 5 LSVLVTGGSGFLGQHLVQALLENELKLEIRVVDK 38 (361)
T ss_pred CEEEEECCccHHHHHHHHHHHhcccccEEEEecc
Confidence 78999999 9999999999998764433444454
No 416
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=66.08 E-value=11 Score=32.68 Aligned_cols=29 Identities=14% Similarity=0.151 Sum_probs=24.5
Q ss_pred eEEEEEec-CHHHHHHHHHHHcCCCcEEEEE
Q 022491 7 IKIGINGF-GRIGRLVARVALQRDDVELVAV 36 (296)
Q Consensus 7 i~vgI~G~-G~iG~~l~r~l~~~p~~elv~i 36 (296)
.++-|.|+ |.+|+.+++.|.++. .+++.+
T Consensus 8 ~~vlItGasg~iG~~la~~l~~~G-~~v~~~ 37 (262)
T PRK13394 8 KTAVVTGAASGIGKEIALELARAG-AAVAIA 37 (262)
T ss_pred CEEEEECCCChHHHHHHHHHHHCC-CeEEEE
Confidence 67999999 999999999999886 466554
No 417
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=66.04 E-value=7.7 Score=37.20 Aligned_cols=30 Identities=23% Similarity=0.383 Sum_probs=24.6
Q ss_pred eEEEEEecCHHHHHHHHHHHcCCCcEEEEEe
Q 022491 7 IKIGINGFGRIGRLVARVALQRDDVELVAVN 37 (296)
Q Consensus 7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~ 37 (296)
|||.|+|+|++|+.+++.|.... .+++.+.
T Consensus 1 m~viIiG~G~ig~~~a~~L~~~g-~~v~vid 30 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENLSGEN-NDVTVID 30 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhCC-CcEEEEE
Confidence 37999999999999999998753 5676663
No 418
>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=65.98 E-value=46 Score=31.95 Aligned_cols=85 Identities=19% Similarity=0.189 Sum_probs=50.7
Q ss_pred eEEEEEecCHHHHHHHHHHHcCCC-cEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEec-
Q 022491 7 IKIGINGFGRIGRLVARVALQRDD-VELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGF- 84 (296)
Q Consensus 7 i~vgI~G~G~iG~~l~r~l~~~p~-~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~- 84 (296)
.||.|+|.|..|...++.|..+.. .++. +.|....... . + ++. .| +.++..
T Consensus 8 ~~v~viG~G~sG~s~~~~l~~~~~~~~v~-~~D~~~~~~~-~-----~----~l~-------~g---------~~~~~g~ 60 (438)
T PRK04663 8 KNVVVVGLGITGLSVVKHLRKYQPQLTVK-VIDTRETPPG-Q-----E----QLP-------ED---------VELHSGG 60 (438)
T ss_pred ceEEEEeccHHHHHHHHHHHhcCCCCeEE-EEeCCCCchh-H-----H----Hhh-------cC---------CEEEeCC
Confidence 579999999999999999988754 6554 4554111110 0 0 011 01 112211
Q ss_pred CCCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCC
Q 022491 85 RNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAK 122 (296)
Q Consensus 85 ~d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k 122 (296)
.+++.+ .+.|+|+-+.+-..+......+.++|++
T Consensus 61 ~~~~~~----~~~d~vV~SpgI~~~~p~~~~a~~~gi~ 94 (438)
T PRK04663 61 WNLEWL----LEADLVVTNPGIALATPEIQQVLAAGIP 94 (438)
T ss_pred CChHHh----ccCCEEEECCCCCCCCHHHHHHHHCCCc
Confidence 133333 3689888887766666667777788873
No 419
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=65.83 E-value=7.7 Score=36.55 Aligned_cols=29 Identities=17% Similarity=0.331 Sum_probs=23.6
Q ss_pred eEEEEEecCHHHHHHHHHHHcCCCcEEEEE
Q 022491 7 IKIGINGFGRIGRLVARVALQRDDVELVAV 36 (296)
Q Consensus 7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i 36 (296)
++|.|+|+|.+|..++-+|.+++ ++++-+
T Consensus 3 ~dV~IvGaG~aGl~lA~~L~~~G-~~V~l~ 31 (387)
T COG0654 3 LDVAIVGAGPAGLALALALARAG-LDVTLL 31 (387)
T ss_pred CCEEEECCCHHHHHHHHHHHhCC-CcEEEE
Confidence 67999999999999998888876 554443
No 420
>TIGR03025 EPS_sugtrans exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase. Certain closely related transferase enzymes such as Sinorhizobium ExoY and Lactococcus EpsD lack the N-terminal domain and are not found by this model.
Probab=65.62 E-value=16 Score=35.25 Aligned_cols=33 Identities=24% Similarity=0.273 Sum_probs=28.7
Q ss_pred eEEEEEecCHHHHHHHHHHHcCCC--cEEEEEecC
Q 022491 7 IKIGINGFGRIGRLVARVALQRDD--VELVAVNDP 39 (296)
Q Consensus 7 i~vgI~G~G~iG~~l~r~l~~~p~--~elv~i~~~ 39 (296)
.|+-|+|+|..|.++++.+.++|. .+++++.|.
T Consensus 126 ~rvLIvGag~~a~~l~~~L~~~~~~g~~vvG~idd 160 (445)
T TIGR03025 126 RRVLIVGTGEAARELAAALSRNPDLGYRVVGFVDD 160 (445)
T ss_pred CcEEEEECCHHHHHHHHHHhhCccCCeEEEEEEeC
Confidence 579999999999999999988774 788888765
No 421
>PRK11445 putative oxidoreductase; Provisional
Probab=65.57 E-value=7.8 Score=35.98 Aligned_cols=29 Identities=24% Similarity=0.560 Sum_probs=24.0
Q ss_pred eEEEEEecCHHHHHHHHHHHcCCCcEEEEEe
Q 022491 7 IKIGINGFGRIGRLVARVALQRDDVELVAVN 37 (296)
Q Consensus 7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~ 37 (296)
..|.|+|+|.+|..++..|.++ ++++.+-
T Consensus 2 ~dV~IvGaGpaGl~~A~~La~~--~~V~liE 30 (351)
T PRK11445 2 YDVAIIGLGPAGSALARLLAGK--MKVIAID 30 (351)
T ss_pred ceEEEECCCHHHHHHHHHHhcc--CCEEEEE
Confidence 6899999999999999998876 6655553
No 422
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=65.50 E-value=19 Score=34.66 Aligned_cols=30 Identities=30% Similarity=0.392 Sum_probs=24.1
Q ss_pred EEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491 8 KIGINGFGRIGRLVARVALQRDDVELVAVNDP 39 (296)
Q Consensus 8 ~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~ 39 (296)
||.|+|+|..|...++.|.... .++ .+.|.
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G-~~V-~~~D~ 31 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQG-WEV-VVSDR 31 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCC-CEE-EEECC
Confidence 6899999999999999998876 444 44554
No 423
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=65.39 E-value=8.4 Score=34.73 Aligned_cols=29 Identities=28% Similarity=0.447 Sum_probs=24.6
Q ss_pred EEEEEec-CHHHHHHHHHHHcCCCcEEEEEe
Q 022491 8 KIGINGF-GRIGRLVARVALQRDDVELVAVN 37 (296)
Q Consensus 8 ~vgI~G~-G~iG~~l~r~l~~~p~~elv~i~ 37 (296)
+|-|.|+ |++|+.+++.|.+++ .++.++.
T Consensus 2 ~vlItG~~G~iG~~l~~~L~~~g-~~V~~~~ 31 (328)
T TIGR03466 2 KVLVTGATGFVGSAVVRLLLEQG-EEVRVLV 31 (328)
T ss_pred eEEEECCccchhHHHHHHHHHCC-CEEEEEE
Confidence 6899999 999999999998876 4666664
No 424
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=65.14 E-value=33 Score=31.44 Aligned_cols=31 Identities=29% Similarity=0.319 Sum_probs=22.9
Q ss_pred eEEEEEecCHHHHHHHHHHHcCCCcEEEEEec
Q 022491 7 IKIGINGFGRIGRLVARVALQRDDVELVAVND 38 (296)
Q Consensus 7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~ 38 (296)
-+|.|.|+|.+|..+++++.... .+.+.+.+
T Consensus 162 ~~vlV~G~g~vG~~~~~~a~~~G-~~~v~~~~ 192 (347)
T PRK10309 162 KNVIIIGAGTIGLLAIQCAVALG-AKSVTAID 192 (347)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC-CCeEEEEC
Confidence 37999999999999998887765 55333333
No 425
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=64.86 E-value=8.9 Score=36.25 Aligned_cols=29 Identities=24% Similarity=0.268 Sum_probs=23.4
Q ss_pred eEEEEEecCHHHHHHHHHHHcCCCcEEEEE
Q 022491 7 IKIGINGFGRIGRLVARVALQRDDVELVAV 36 (296)
Q Consensus 7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i 36 (296)
.+|.|||+|.+|...++.|.+.. .+++-+
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~g-~~V~vl 30 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQRG-YQVTVF 30 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC-CeEEEE
Confidence 48999999999999999998763 555444
No 426
>PRK07454 short chain dehydrogenase; Provisional
Probab=64.86 E-value=13 Score=31.99 Aligned_cols=36 Identities=22% Similarity=0.196 Sum_probs=27.4
Q ss_pred CCCCCeeEEEEEec-CHHHHHHHHHHHcCCCcEEEEEe
Q 022491 1 MAGDKKIKIGINGF-GRIGRLVARVALQRDDVELVAVN 37 (296)
Q Consensus 1 m~~~m~i~vgI~G~-G~iG~~l~r~l~~~p~~elv~i~ 37 (296)
|+...+.++-|.|+ |.+|+.+++.|.++. .+++.+.
T Consensus 1 ~~~~~~k~vlItG~sg~iG~~la~~l~~~G-~~V~~~~ 37 (241)
T PRK07454 1 MSLNSMPRALITGASSGIGKATALAFAKAG-WDLALVA 37 (241)
T ss_pred CCCCCCCEEEEeCCCchHHHHHHHHHHHCC-CEEEEEe
Confidence 55444467999999 999999999999875 3555543
No 427
>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=64.84 E-value=37 Score=30.58 Aligned_cols=81 Identities=17% Similarity=0.228 Sum_probs=47.6
Q ss_pred EEEEEecCHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEecCCC
Q 022491 8 KIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNP 87 (296)
Q Consensus 8 ~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~~d~ 87 (296)
+|.|.|.|.+|..+++++.... ++++.+.+. .+....+ ..++ . +. ++. .
T Consensus 170 ~vlV~g~g~vg~~~~~la~~~g-~~v~~~~~~-~~~~~~~------~~~g----~--------~~--------~~~---~ 218 (329)
T cd08298 170 RLGLYGFGASAHLALQIARYQG-AEVFAFTRS-GEHQELA------RELG----A--------DW--------AGD---S 218 (329)
T ss_pred EEEEECCcHHHHHHHHHHHHCC-CeEEEEcCC-hHHHHHH------HHhC----C--------cE--------Eec---c
Confidence 6888988999999988777665 787776544 2211111 1011 0 01 111 1
Q ss_pred CCCCcccCCCcEEEEccCCccCHHHHHHHHHCCC
Q 022491 88 EEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGA 121 (296)
Q Consensus 88 ~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~ 121 (296)
.+.+ ..++|++++|++.....+.+..+++.+-
T Consensus 219 ~~~~--~~~vD~vi~~~~~~~~~~~~~~~l~~~G 250 (329)
T cd08298 219 DDLP--PEPLDAAIIFAPVGALVPAALRAVKKGG 250 (329)
T ss_pred CccC--CCcccEEEEcCCcHHHHHHHHHHhhcCC
Confidence 1111 2468999999887666666777777665
No 428
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=64.70 E-value=50 Score=31.61 Aligned_cols=90 Identities=16% Similarity=0.186 Sum_probs=50.4
Q ss_pred eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecCCCCh-hhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEecC
Q 022491 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFIST-DYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFR 85 (296)
Q Consensus 7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~~~~~-~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~~ 85 (296)
.++.|+|+|.+|+..++.|.+.. .+++. .|..... ......+ .. .| +.++...
T Consensus 6 k~v~v~G~g~~G~s~a~~l~~~G-~~V~~-~d~~~~~~~~~~~~l--~~-------------~g---------~~~~~~~ 59 (447)
T PRK02472 6 KKVLVLGLAKSGYAAAKLLHKLG-ANVTV-NDGKPFSENPEAQEL--LE-------------EG---------IKVICGS 59 (447)
T ss_pred CEEEEEeeCHHHHHHHHHHHHCC-CEEEE-EcCCCccchhHHHHH--Hh-------------cC---------CEEEeCC
Confidence 57999999889999999998876 45444 3431111 1000000 00 01 1111111
Q ss_pred CCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEe
Q 022491 86 NPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVI 126 (296)
Q Consensus 86 d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvi 126 (296)
++.++ . ..+.|+||-+.+-.........+.+.|+ .|+
T Consensus 60 ~~~~~-~-~~~~d~vV~s~gi~~~~~~~~~a~~~~i--~v~ 96 (447)
T PRK02472 60 HPLEL-L-DEDFDLMVKNPGIPYTNPMVEKALEKGI--PII 96 (447)
T ss_pred CCHHH-h-cCcCCEEEECCCCCCCCHHHHHHHHCCC--cEE
Confidence 22222 0 1248999988876666677777888888 455
No 429
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=64.57 E-value=9.8 Score=31.63 Aligned_cols=28 Identities=21% Similarity=0.209 Sum_probs=23.9
Q ss_pred EEEEEecCHHHHHHHHHHHcCCCcEEEEE
Q 022491 8 KIGINGFGRIGRLVARVALQRDDVELVAV 36 (296)
Q Consensus 8 ~vgI~G~G~iG~~l~r~l~~~p~~elv~i 36 (296)
||.|+|+|..|...++.|. ++..++.-|
T Consensus 1 ~vvIIGgG~aGl~aA~~l~-~~~~~v~ii 28 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELA-RPGAKVLII 28 (201)
T ss_dssp EEEEESSSHHHHHHHHHHH-HTTSEEEEE
T ss_pred CEEEEecHHHHHHHHHHHh-cCCCeEEEE
Confidence 6899999999999999988 446777777
No 430
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=64.44 E-value=12 Score=35.31 Aligned_cols=30 Identities=20% Similarity=0.119 Sum_probs=23.4
Q ss_pred eEEEEEecCHHHHHHHHHHHcCCCcEEEEE
Q 022491 7 IKIGINGFGRIGRLVARVALQRDDVELVAV 36 (296)
Q Consensus 7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i 36 (296)
.||.|+|+|-+|.+++..|....-=++.-+
T Consensus 136 ~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lv 165 (376)
T PRK08762 136 ARVLLIGAGGLGSPAALYLAAAGVGTLGIV 165 (376)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCeEEEE
Confidence 689999999999999999987652234333
No 431
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=64.43 E-value=11 Score=35.03 Aligned_cols=32 Identities=22% Similarity=0.288 Sum_probs=25.6
Q ss_pred CeeEEEEEecCHHHHHHHHHHHcCCCcEEEEEe
Q 022491 5 KKIKIGINGFGRIGRLVARVALQRDDVELVAVN 37 (296)
Q Consensus 5 m~i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~ 37 (296)
|+.+|.|||+|.+|...+..|.++.. +|+-+-
T Consensus 3 ~~~~vvVIGgGi~Gls~A~~La~~G~-~V~vie 34 (387)
T COG0665 3 MKMDVVIIGGGIVGLSAAYYLAERGA-DVTVLE 34 (387)
T ss_pred CcceEEEECCcHHHHHHHHHHHHcCC-EEEEEe
Confidence 45789999999999999999988764 555553
No 432
>COG0702 Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=64.34 E-value=9.5 Score=33.34 Aligned_cols=29 Identities=38% Similarity=0.426 Sum_probs=24.9
Q ss_pred EEEEEec-CHHHHHHHHHHHcCCCcEEEEEe
Q 022491 8 KIGINGF-GRIGRLVARVALQRDDVELVAVN 37 (296)
Q Consensus 8 ~vgI~G~-G~iG~~l~r~l~~~p~~elv~i~ 37 (296)
+|-|.|+ |.+|+.+++.|.++ .-++.+++
T Consensus 2 ~ilV~GatG~~G~~~~~~L~~~-~~~v~~~~ 31 (275)
T COG0702 2 KILVTGATGFVGGAVVRELLAR-GHEVRAAV 31 (275)
T ss_pred eEEEEecccchHHHHHHHHHhC-CCEEEEEE
Confidence 6899999 99999999999998 46666665
No 433
>PRK06500 short chain dehydrogenase; Provisional
Probab=64.29 E-value=12 Score=32.18 Aligned_cols=35 Identities=23% Similarity=0.133 Sum_probs=27.3
Q ss_pred CCCCCeeEEEEEec-CHHHHHHHHHHHcCCCcEEEEE
Q 022491 1 MAGDKKIKIGINGF-GRIGRLVARVALQRDDVELVAV 36 (296)
Q Consensus 1 m~~~m~i~vgI~G~-G~iG~~l~r~l~~~p~~elv~i 36 (296)
|...+..++-|.|+ |.+|+.+++.|.++. .+++.+
T Consensus 1 m~~~~~k~vlItGasg~iG~~la~~l~~~g-~~v~~~ 36 (249)
T PRK06500 1 MSRLQGKTALITGGTSGIGLETARQFLAEG-ARVAIT 36 (249)
T ss_pred CCCCCCCEEEEeCCCchHHHHHHHHHHHCC-CEEEEe
Confidence 55443468999999 999999999999876 466554
No 434
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=64.26 E-value=12 Score=30.92 Aligned_cols=30 Identities=30% Similarity=0.454 Sum_probs=24.6
Q ss_pred eEEEEEecCHHHHHHHHHHHcCCCcEEEEEe
Q 022491 7 IKIGINGFGRIGRLVARVALQRDDVELVAVN 37 (296)
Q Consensus 7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~ 37 (296)
.||.|+|+|++|+..++++...+ ++++.+-
T Consensus 21 ~~vvv~G~G~vg~gA~~~~~~lG-a~v~~~d 50 (168)
T PF01262_consen 21 AKVVVTGAGRVGQGAAEIAKGLG-AEVVVPD 50 (168)
T ss_dssp -EEEEESTSHHHHHHHHHHHHTT--EEEEEE
T ss_pred eEEEEECCCHHHHHHHHHHhHCC-CEEEecc
Confidence 78999999999999999999987 6665553
No 435
>PLN00198 anthocyanidin reductase; Provisional
Probab=64.06 E-value=11 Score=34.52 Aligned_cols=31 Identities=19% Similarity=0.231 Sum_probs=25.4
Q ss_pred eeEEEEEec-CHHHHHHHHHHHcCCCcEEEEEe
Q 022491 6 KIKIGINGF-GRIGRLVARVALQRDDVELVAVN 37 (296)
Q Consensus 6 ~i~vgI~G~-G~iG~~l~r~l~~~p~~elv~i~ 37 (296)
+.+|-|.|+ |++|+.+++.|.+.. .+++++.
T Consensus 9 ~~~vlItG~~GfIG~~l~~~L~~~g-~~V~~~~ 40 (338)
T PLN00198 9 KKTACVIGGTGFLASLLIKLLLQKG-YAVNTTV 40 (338)
T ss_pred CCeEEEECCchHHHHHHHHHHHHCC-CEEEEEE
Confidence 368999999 999999999999875 4665553
No 436
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=64.02 E-value=13 Score=29.77 Aligned_cols=29 Identities=34% Similarity=0.342 Sum_probs=22.9
Q ss_pred EEEEecCHHHHHHHHHHHcCCCcEEEEEec
Q 022491 9 IGINGFGRIGRLVARVALQRDDVELVAVND 38 (296)
Q Consensus 9 vgI~G~G~iG~~l~r~l~~~p~~elv~i~~ 38 (296)
|+|+|+|.+|..++..|.+ ...++..+..
T Consensus 1 I~I~G~GaiG~~~a~~L~~-~g~~V~l~~r 29 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQ-AGHDVTLVSR 29 (151)
T ss_dssp EEEESTSHHHHHHHHHHHH-TTCEEEEEES
T ss_pred CEEECcCHHHHHHHHHHHH-CCCceEEEEc
Confidence 6899999999999999977 4456655543
No 437
>TIGR03023 WcaJ_sugtrans Undecaprenyl-phosphate glucose phosphotransferase. Colanic acid biosynthesis utilizes a glucose-undecaprenyl carrier, knockout of EpsB abolishes incorporation of UDP-glucose into the lipid phase and the C-terminal portion of GumD has been shown to be responsible for the glucosyl-1-transferase activity.
Probab=63.72 E-value=16 Score=35.24 Aligned_cols=33 Identities=24% Similarity=0.345 Sum_probs=28.5
Q ss_pred eEEEEEecCHHHHHHHHHHHcCCC--cEEEEEecC
Q 022491 7 IKIGINGFGRIGRLVARVALQRDD--VELVAVNDP 39 (296)
Q Consensus 7 i~vgI~G~G~iG~~l~r~l~~~p~--~elv~i~~~ 39 (296)
.|+.|+|+|..|.++++.+.++++ .+++++.+.
T Consensus 129 ~rvLIiGag~~~~~l~~~L~~~~~~g~~vvG~idd 163 (451)
T TIGR03023 129 RRVLIVGAGELGRRLAERLARNPELGYRVVGFFDD 163 (451)
T ss_pred CcEEEEeCCHHHHHHHHHHHhCccCCcEEEEEEeC
Confidence 579999999999999999988764 788888764
No 438
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=63.68 E-value=25 Score=32.03 Aligned_cols=30 Identities=20% Similarity=0.231 Sum_probs=23.2
Q ss_pred eEEEEEecCHHHHHHHHHHHcCCCcE-EEEEe
Q 022491 7 IKIGINGFGRIGRLVARVALQRDDVE-LVAVN 37 (296)
Q Consensus 7 i~vgI~G~G~iG~~l~r~l~~~p~~e-lv~i~ 37 (296)
-+|.|+|+|-+|..+++++.... .+ ++++.
T Consensus 165 ~~vlV~G~G~vG~~~~~~ak~~G-~~~vi~~~ 195 (339)
T cd08239 165 DTVLVVGAGPVGLGALMLARALG-AEDVIGVD 195 (339)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC-CCEEEEEC
Confidence 37899999999999988887765 55 65553
No 439
>PLN02572 UDP-sulfoquinovose synthase
Probab=63.68 E-value=10 Score=36.57 Aligned_cols=30 Identities=30% Similarity=0.238 Sum_probs=25.4
Q ss_pred eeEEEEEec-CHHHHHHHHHHHcCCCcEEEEE
Q 022491 6 KIKIGINGF-GRIGRLVARVALQRDDVELVAV 36 (296)
Q Consensus 6 ~i~vgI~G~-G~iG~~l~r~l~~~p~~elv~i 36 (296)
++||-|.|+ |+||+.|++.|.+.. .+++.+
T Consensus 47 ~k~VLVTGatGfIGs~Lv~~L~~~G-~~V~~~ 77 (442)
T PLN02572 47 KKKVMVIGGDGYCGWATALHLSKRG-YEVAIV 77 (442)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCC-CeEEEE
Confidence 478999999 999999999999865 566665
No 440
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=63.66 E-value=9.9 Score=37.01 Aligned_cols=30 Identities=20% Similarity=0.286 Sum_probs=23.4
Q ss_pred eeEEEEEecCHHHHHHHHHHHcCCCcEEEEE
Q 022491 6 KIKIGINGFGRIGRLVARVALQRDDVELVAV 36 (296)
Q Consensus 6 ~i~vgI~G~G~iG~~l~r~l~~~p~~elv~i 36 (296)
..+|+|||+|..|...++.|.+.. ++++.+
T Consensus 10 ~~~VaIIGAG~aGL~aA~~l~~~G-~~v~vf 39 (461)
T PLN02172 10 SQHVAVIGAGAAGLVAARELRREG-HTVVVF 39 (461)
T ss_pred CCCEEEECCcHHHHHHHHHHHhcC-CeEEEE
Confidence 378999999999999999888764 444433
No 441
>PLN02260 probable rhamnose biosynthetic enzyme
Probab=63.52 E-value=11 Score=38.47 Aligned_cols=32 Identities=28% Similarity=0.358 Sum_probs=27.1
Q ss_pred eeEEEEEec-CHHHHHHHHHHHcC-CCcEEEEEe
Q 022491 6 KIKIGINGF-GRIGRLVARVALQR-DDVELVAVN 37 (296)
Q Consensus 6 ~i~vgI~G~-G~iG~~l~r~l~~~-p~~elv~i~ 37 (296)
.+||-|.|+ |+||+.+++.|.++ +..+++++.
T Consensus 6 ~~~VLVTGatGfIG~~lv~~Ll~~g~~~~V~~~d 39 (668)
T PLN02260 6 PKNILITGAAGFIASHVANRLIRNYPDYKIVVLD 39 (668)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHhCCCCEEEEEe
Confidence 368999999 99999999999876 467887774
No 442
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=63.29 E-value=24 Score=32.00 Aligned_cols=32 Identities=9% Similarity=0.106 Sum_probs=23.5
Q ss_pred eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP 39 (296)
Q Consensus 7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~ 39 (296)
.++-|.|+|-+|+.++..|.... ++-+.|.++
T Consensus 127 k~vlI~GAGGagrAia~~La~~G-~~~V~I~~R 158 (289)
T PRK12548 127 KKLTVIGAGGAATAIQVQCALDG-AKEITIFNI 158 (289)
T ss_pred CEEEEECCcHHHHHHHHHHHHCC-CCEEEEEeC
Confidence 47899999999999999888765 432333444
No 443
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=63.23 E-value=8 Score=34.40 Aligned_cols=29 Identities=31% Similarity=0.603 Sum_probs=23.7
Q ss_pred eEEEEEecCHHHHHHHHHHHcCCCcEEEEE
Q 022491 7 IKIGINGFGRIGRLVARVALQRDDVELVAV 36 (296)
Q Consensus 7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i 36 (296)
|++|.+|.|++|..+.+.|.++. -++|+-
T Consensus 1 M~iGmiGLGrMG~n~v~rl~~~g-hdvV~y 29 (300)
T COG1023 1 MQIGMIGLGRMGANLVRRLLDGG-HDVVGY 29 (300)
T ss_pred CcceeeccchhhHHHHHHHHhCC-CeEEEE
Confidence 46899999999999999999875 455443
No 444
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=63.15 E-value=28 Score=31.66 Aligned_cols=32 Identities=31% Similarity=0.284 Sum_probs=23.0
Q ss_pred CCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCCC
Q 022491 95 TGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPS 130 (296)
Q Consensus 95 ~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~~ 130 (296)
...|+|+.|+|..-- .-+..++.|+ +|||.+.
T Consensus 200 ~~ADIVV~avG~~~~--i~~~~ik~ga--vVIDVGi 231 (285)
T PRK14189 200 RQADIVVAAVGKRNV--LTADMVKPGA--TVIDVGM 231 (285)
T ss_pred hhCCEEEEcCCCcCc--cCHHHcCCCC--EEEEccc
Confidence 478999999996322 3346778899 8888653
No 445
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=63.10 E-value=10 Score=35.62 Aligned_cols=32 Identities=19% Similarity=0.162 Sum_probs=24.8
Q ss_pred CeeEEEEEecCHHHHHHHHHHHcC-CCcEEEEE
Q 022491 5 KKIKIGINGFGRIGRLVARVALQR-DDVELVAV 36 (296)
Q Consensus 5 m~i~vgI~G~G~iG~~l~r~l~~~-p~~elv~i 36 (296)
|+..|.|||+|.+|..++..|.+. |..++.-+
T Consensus 1 ~~~dVvIIGgGi~G~s~A~~La~~~~g~~V~ll 33 (393)
T PRK11728 1 AMYDFVIIGGGIVGLSTAMQLQERYPGARIAVL 33 (393)
T ss_pred CCccEEEECCcHHHHHHHHHHHHhCCCCeEEEE
Confidence 346899999999999999988874 55555444
No 446
>PRK10675 UDP-galactose-4-epimerase; Provisional
Probab=63.03 E-value=10 Score=34.55 Aligned_cols=30 Identities=23% Similarity=0.381 Sum_probs=24.6
Q ss_pred eEEEEEec-CHHHHHHHHHHHcCCCcEEEEEe
Q 022491 7 IKIGINGF-GRIGRLVARVALQRDDVELVAVN 37 (296)
Q Consensus 7 i~vgI~G~-G~iG~~l~r~l~~~p~~elv~i~ 37 (296)
|||-|.|+ |.+|+.+++.|.+.. .+++.+.
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~ 31 (338)
T PRK10675 1 MRVLVTGGSGYIGSHTCVQLLQNG-HDVVILD 31 (338)
T ss_pred CeEEEECCCChHHHHHHHHHHHCC-CeEEEEe
Confidence 37999999 999999999998764 5666664
No 447
>PRK12742 oxidoreductase; Provisional
Probab=62.98 E-value=13 Score=31.69 Aligned_cols=35 Identities=17% Similarity=0.113 Sum_probs=26.9
Q ss_pred CCCCCeeEEEEEec-CHHHHHHHHHHHcCCCcEEEEE
Q 022491 1 MAGDKKIKIGINGF-GRIGRLVARVALQRDDVELVAV 36 (296)
Q Consensus 1 m~~~m~i~vgI~G~-G~iG~~l~r~l~~~p~~elv~i 36 (296)
|+..+..++-|.|+ |.||+++++.|.++. .+++.+
T Consensus 1 m~~~~~k~vlItGasggIG~~~a~~l~~~G-~~v~~~ 36 (237)
T PRK12742 1 MGAFTGKKVLVLGGSRGIGAAIVRRFVTDG-ANVRFT 36 (237)
T ss_pred CCCCCCCEEEEECCCChHHHHHHHHHHHCC-CEEEEe
Confidence 55443467999999 999999999998875 465544
No 448
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=62.78 E-value=14 Score=33.59 Aligned_cols=34 Identities=24% Similarity=0.334 Sum_probs=26.6
Q ss_pred CCCCCeeEEEEEec-CHHHHHHHHHHHcCCCcEEEEE
Q 022491 1 MAGDKKIKIGINGF-GRIGRLVARVALQRDDVELVAV 36 (296)
Q Consensus 1 m~~~m~i~vgI~G~-G~iG~~l~r~l~~~p~~elv~i 36 (296)
|+... .+|-|.|+ |.||+.+++.|.++. .+++.+
T Consensus 1 ~~~~~-k~vlVtG~~G~IG~~l~~~L~~~G-~~V~~~ 35 (325)
T PLN02989 1 MADGG-KVVCVTGASGYIASWIVKLLLFRG-YTINAT 35 (325)
T ss_pred CCCCC-CEEEEECCchHHHHHHHHHHHHCC-CEEEEE
Confidence 56543 68999999 999999999998875 455444
No 449
>PRK07806 short chain dehydrogenase; Provisional
Probab=62.63 E-value=14 Score=31.91 Aligned_cols=36 Identities=17% Similarity=0.094 Sum_probs=27.0
Q ss_pred CCCCCeeEEEEEec-CHHHHHHHHHHHcCCCcEEEEEe
Q 022491 1 MAGDKKIKIGINGF-GRIGRLVARVALQRDDVELVAVN 37 (296)
Q Consensus 1 m~~~m~i~vgI~G~-G~iG~~l~r~l~~~p~~elv~i~ 37 (296)
|.+++..++-|.|+ |.+|+.+++.|.++. .+++.+.
T Consensus 1 ~~~~~~k~vlItGasggiG~~l~~~l~~~G-~~V~~~~ 37 (248)
T PRK07806 1 MGDLPGKTALVTGSSRGIGADTAKILAGAG-AHVVVNY 37 (248)
T ss_pred CCCCCCcEEEEECCCCcHHHHHHHHHHHCC-CEEEEEe
Confidence 54433367999999 999999999998775 5665543
No 450
>PRK14851 hypothetical protein; Provisional
Probab=61.84 E-value=11 Score=38.71 Aligned_cols=23 Identities=22% Similarity=0.440 Sum_probs=20.2
Q ss_pred eEEEEEecCHHHHHHHHHHHcCC
Q 022491 7 IKIGINGFGRIGRLVARVALQRD 29 (296)
Q Consensus 7 i~vgI~G~G~iG~~l~r~l~~~p 29 (296)
.||+|+|+|=+|..++..|..-.
T Consensus 44 ~~VlIvG~GGlGs~va~~Lar~G 66 (679)
T PRK14851 44 AKVAIPGMGGVGGVHLITMVRTG 66 (679)
T ss_pred CeEEEECcCHHHHHHHHHHHHhC
Confidence 58999999999999999988654
No 451
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=61.79 E-value=36 Score=31.29 Aligned_cols=29 Identities=21% Similarity=0.279 Sum_probs=23.3
Q ss_pred eEEEEEecCHHHHHHHHHHHcCCCcEEEEE
Q 022491 7 IKIGINGFGRIGRLVARVALQRDDVELVAV 36 (296)
Q Consensus 7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i 36 (296)
-+|.|.|+|.+|..+++++.... .+++.+
T Consensus 168 ~~VlV~G~G~vG~~a~~~a~~~G-~~vi~~ 196 (349)
T TIGR03201 168 DLVIVIGAGGVGGYMVQTAKAMG-AAVVAI 196 (349)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC-CeEEEE
Confidence 36999999999999988887765 566555
No 452
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=61.71 E-value=45 Score=32.03 Aligned_cols=89 Identities=20% Similarity=0.166 Sum_probs=49.8
Q ss_pred EEEEEecCHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEe-cCC
Q 022491 8 KIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFG-FRN 86 (296)
Q Consensus 8 ~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~-~~d 86 (296)
.|.|+|.|.+|..++|+|.+.. .++ .++|...+...... | .+. +. | +.++. ..+
T Consensus 8 ~~~v~G~G~sG~s~a~~L~~~G-~~v-~~~D~~~~~~~~~~-l--~~~---~~--------g---------~~~~~~~~~ 62 (448)
T PRK03803 8 LHIVVGLGKTGLSVVRFLARQG-IPF-AVMDSREQPPGLDT-L--ARE---FP--------D---------VELRCGGFD 62 (448)
T ss_pred eEEEEeecHhHHHHHHHHHhCC-CeE-EEEeCCCCchhHHH-H--Hhh---cC--------C---------cEEEeCCCC
Confidence 5899999999999999999876 444 44554122110000 1 000 00 1 11221 123
Q ss_pred CCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEee
Q 022491 87 PEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVIS 127 (296)
Q Consensus 87 ~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid 127 (296)
++.+ .+.|+|+-+.+-..+......+.+.|+ .|++
T Consensus 63 ~~~~----~~~d~vV~sp~i~~~~p~~~~a~~~~i--~i~~ 97 (448)
T PRK03803 63 CELL----VQASEIIISPGLALDTPALRAAAAMGI--EVIG 97 (448)
T ss_pred hHHh----cCCCEEEECCCCCCCCHHHHHHHHCCC--cEEE
Confidence 3333 368988887766555566667777887 4453
No 453
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=61.62 E-value=7.6 Score=35.69 Aligned_cols=22 Identities=32% Similarity=0.437 Sum_probs=19.7
Q ss_pred EEEEEecCHHHHHHHHHHHcCC
Q 022491 8 KIGINGFGRIGRLVARVALQRD 29 (296)
Q Consensus 8 ~vgI~G~G~iG~~l~r~l~~~p 29 (296)
||+|+|+|.+|..+...|.+..
T Consensus 2 kI~IiGaGa~G~ala~~L~~~g 23 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSKK 23 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHCC
Confidence 7999999999999999988653
No 454
>PRK10084 dTDP-glucose 4,6 dehydratase; Provisional
Probab=61.56 E-value=11 Score=34.73 Aligned_cols=29 Identities=34% Similarity=0.416 Sum_probs=23.2
Q ss_pred EEEEEec-CHHHHHHHHHHHcCCCcEEEEE
Q 022491 8 KIGINGF-GRIGRLVARVALQRDDVELVAV 36 (296)
Q Consensus 8 ~vgI~G~-G~iG~~l~r~l~~~p~~elv~i 36 (296)
||-|.|+ |.+|+.+++.|.+++.-.++.+
T Consensus 2 kilITGgtG~iG~~l~~~L~~~g~~~v~~~ 31 (352)
T PRK10084 2 KILVTGGAGFIGSAVVRHIINNTQDSVVNV 31 (352)
T ss_pred eEEEECCCcHHhHHHHHHHHHhCCCeEEEe
Confidence 7999999 9999999999988764334433
No 455
>PF07683 CobW_C: Cobalamin synthesis protein cobW C-terminal domain; InterPro: IPR011629 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents the C-terminal domain found in CobW, as well as in P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [].; PDB: 1NIJ_A.
Probab=61.34 E-value=14 Score=27.07 Aligned_cols=46 Identities=17% Similarity=0.228 Sum_probs=32.1
Q ss_pred EEEEEEeecCCCHHHHHHHHHHhhcC--cCCCcccccCC-ceeeecCCC
Q 022491 248 VDLTVRLEKEATYEEIKNAIKEESEG--KLKGILGYTEE-DVVSTDFVG 293 (296)
Q Consensus 248 ~~~~~~l~~~~~~~ev~~~~~~~~~~--~~~~~~~~~~~-~~vs~d~~~ 293 (296)
.+++++.+++++.+.+.+.+++.+.+ +.||++.+.++ ...-.+.++
T Consensus 2 ~s~~~~~~~p~~~~~l~~~l~~~~~~vlR~KG~v~~~~~~~~~~~q~v~ 50 (94)
T PF07683_consen 2 SSVTFEFDRPFDPERLEAWLQELPGDVLRAKGIVWVADGPRRLVFQGVG 50 (94)
T ss_dssp EEEEEEESS-B-HHHHHHHHHHTTTTEEEEEEEE-BTT-SEEEEEEEET
T ss_pred EEEEEEeCCCCCHHHHHHHHHhCCCCEEEEEEEEEeCCcCeEEEEEeeC
Confidence 46788889999999999999996665 78999998877 344444443
No 456
>COG1832 Predicted CoA-binding protein [General function prediction only]
Probab=61.29 E-value=58 Score=26.29 Aligned_cols=83 Identities=22% Similarity=0.252 Sum_probs=54.4
Q ss_pred eEEEEEec----CHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEE
Q 022491 7 IKIGINGF----GRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVF 82 (296)
Q Consensus 7 i~vgI~G~----G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~ 82 (296)
.+||++|+ .+-+-.+.+-|.++. .++.-||-. ...+ ... |+. ++
T Consensus 17 K~IAvVG~S~~P~r~sy~V~kyL~~~G-Y~ViPVNP~-~~~~---------eiL-------------------G~k--~y 64 (140)
T COG1832 17 KTIAVVGASDKPDRPSYRVAKYLQQKG-YRVIPVNPK-LAGE---------EIL-------------------GEK--VY 64 (140)
T ss_pred ceEEEEecCCCCCccHHHHHHHHHHCC-CEEEeeCcc-cchH---------Hhc-------------------Cch--hh
Confidence 57888888 466777777777776 788777632 2221 111 000 11
Q ss_pred ecCCCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEe
Q 022491 83 GFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVI 126 (296)
Q Consensus 83 ~~~d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvi 126 (296)
. +..+++ ..+|+|-.--+.....+.++++++.|+|.++.
T Consensus 65 ~--sL~dIp---e~IDiVdvFR~~e~~~~i~~eal~~~~kv~W~ 103 (140)
T COG1832 65 P--SLADIP---EPIDIVDVFRRSEAAPEVAREALEKGAKVVWL 103 (140)
T ss_pred h--cHHhCC---CCCcEEEEecChhhhHHHHHHHHhhCCCeEEE
Confidence 1 344554 46888877778888889999999999976665
No 457
>COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane]
Probab=61.21 E-value=9.5 Score=34.64 Aligned_cols=30 Identities=30% Similarity=0.496 Sum_probs=25.8
Q ss_pred EEEEEec-CHHHHHHHHHHHcCCCcEEEEEecC
Q 022491 8 KIGINGF-GRIGRLVARVALQRDDVELVAVNDP 39 (296)
Q Consensus 8 ~vgI~G~-G~iG~~l~r~l~~~p~~elv~i~~~ 39 (296)
||-|.|+ |..|.+|.+.|. +..+++++...
T Consensus 2 ~iLi~G~~GqLG~~L~~~l~--~~~~v~a~~~~ 32 (281)
T COG1091 2 KILITGANGQLGTELRRALP--GEFEVIATDRA 32 (281)
T ss_pred cEEEEcCCChHHHHHHHHhC--CCceEEeccCc
Confidence 4999999 999999999888 77888888644
No 458
>PLN02827 Alcohol dehydrogenase-like
Probab=61.20 E-value=34 Score=32.06 Aligned_cols=29 Identities=31% Similarity=0.426 Sum_probs=22.0
Q ss_pred eEEEEEecCHHHHHHHHHHHcCCCcE-EEEE
Q 022491 7 IKIGINGFGRIGRLVARVALQRDDVE-LVAV 36 (296)
Q Consensus 7 i~vgI~G~G~iG~~l~r~l~~~p~~e-lv~i 36 (296)
-+|.|+|+|.+|..+++++.... ++ ++++
T Consensus 195 ~~VlV~G~G~vG~~~iqlak~~G-~~~vi~~ 224 (378)
T PLN02827 195 SSVVIFGLGTVGLSVAQGAKLRG-ASQIIGV 224 (378)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC-CCeEEEE
Confidence 36899999999999988877665 54 4443
No 459
>PF01370 Epimerase: NAD dependent epimerase/dehydratase family; InterPro: IPR001509 This family of proteins utilise NAD as a cofactor. The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions []. It contains the NAD(P)- binding domain (IPR016040 from INTERPRO) which is a commonly found domain with a core Rossmann-type fold. One of the best studied of these proteins is UDP-galactose 4-epimerase which catalyses the conversion of UDP-galactose to UDP-glucose during galactose metabolism [, ].; GO: 0003824 catalytic activity, 0050662 coenzyme binding, 0044237 cellular metabolic process; PDB: 2NNL_D 3C1T_B 3BXX_C 2IOD_C 2X4G_A 2Q1W_B 3SLG_B 1R66_A 1R6D_A 1KEU_B ....
Probab=61.20 E-value=13 Score=31.53 Aligned_cols=29 Identities=28% Similarity=0.450 Sum_probs=22.8
Q ss_pred EEEEec-CHHHHHHHHHHHcCCCcEEEEEec
Q 022491 9 IGINGF-GRIGRLVARVALQRDDVELVAVND 38 (296)
Q Consensus 9 vgI~G~-G~iG~~l~r~l~~~p~~elv~i~~ 38 (296)
|-|.|+ |++|+.+++.|.+...- ++.+..
T Consensus 1 IlI~GatG~iG~~l~~~l~~~g~~-v~~~~~ 30 (236)
T PF01370_consen 1 ILITGATGFIGSALVRQLLKKGHE-VIVLSR 30 (236)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTTE-EEEEES
T ss_pred EEEEccCCHHHHHHHHHHHHcCCc-cccccc
Confidence 579999 99999999999987643 445543
No 460
>smart00833 CobW_C Cobalamin synthesis protein cobW C-terminal domain. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis PUBMED:12869542. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents the C-terminal domain found in CobW, as well as in P47K, a Pseudomonas chlororaphis protein needed for nitrile hydratase expression PUBMED:7765511.
Probab=61.19 E-value=14 Score=26.82 Aligned_cols=47 Identities=17% Similarity=0.186 Sum_probs=35.7
Q ss_pred EEEEEEeecCCCHHHHHHHHHHhhcC--cCCCcccccCCc--eeeecCCCC
Q 022491 248 VDLTVRLEKEATYEEIKNAIKEESEG--KLKGILGYTEED--VVSTDFVGD 294 (296)
Q Consensus 248 ~~~~~~l~~~~~~~ev~~~~~~~~~~--~~~~~~~~~~~~--~vs~d~~~~ 294 (296)
.++++....+.+.+++.+.+++...+ +.||++...+++ .+..+++++
T Consensus 2 ~s~~~~~~~~~~~~~l~~~l~~l~~~i~R~KG~v~~~~~~~~~~~~q~v~~ 52 (92)
T smart00833 2 SSFVYRARRPFHPQRLLAALDELPEGVLRAKGFFWLASRPDLPGVLSGAGG 52 (92)
T ss_pred EEEEEecCCCCCHHHHHHHHHhccCCeEEEEEEEEeCCCCCeEEEEEccCC
Confidence 35667778889999999999887654 789999887764 455565554
No 461
>PRK11150 rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Provisional
Probab=61.07 E-value=12 Score=33.81 Aligned_cols=30 Identities=23% Similarity=0.298 Sum_probs=24.2
Q ss_pred EEEEec-CHHHHHHHHHHHcCCCcEEEEEecC
Q 022491 9 IGINGF-GRIGRLVARVALQRDDVELVAVNDP 39 (296)
Q Consensus 9 vgI~G~-G~iG~~l~r~l~~~p~~elv~i~~~ 39 (296)
|-|.|+ |++|+.|++.|.++. .+++.+.+.
T Consensus 2 ilVtGa~GfiG~~l~~~L~~~g-~~~v~~~~~ 32 (308)
T PRK11150 2 IIVTGGAGFIGSNIVKALNDKG-ITDILVVDN 32 (308)
T ss_pred EEEecCCcHHHHHHHHHHHhCC-CceEEEecC
Confidence 679999 999999999999876 455666554
No 462
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=61.04 E-value=42 Score=32.87 Aligned_cols=31 Identities=23% Similarity=0.287 Sum_probs=24.8
Q ss_pred eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP 39 (296)
Q Consensus 7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~ 39 (296)
.||.|+|.|..|..++|+|..+. .++.+ .|.
T Consensus 8 ~~i~v~G~G~sG~s~a~~L~~~G-~~v~~-~D~ 38 (498)
T PRK02006 8 PMVLVLGLGESGLAMARWCARHG-ARLRV-ADT 38 (498)
T ss_pred CEEEEEeecHhHHHHHHHHHHCC-CEEEE-EcC
Confidence 47999999999999999999886 45543 453
No 463
>PRK08017 oxidoreductase; Provisional
Probab=60.72 E-value=15 Score=31.83 Aligned_cols=30 Identities=23% Similarity=0.191 Sum_probs=24.6
Q ss_pred eEEEEEec-CHHHHHHHHHHHcCCCcEEEEEe
Q 022491 7 IKIGINGF-GRIGRLVARVALQRDDVELVAVN 37 (296)
Q Consensus 7 i~vgI~G~-G~iG~~l~r~l~~~p~~elv~i~ 37 (296)
.++-|.|+ |.+|+.+++.|.++. .+++.+.
T Consensus 3 k~vlVtGasg~IG~~la~~l~~~g-~~v~~~~ 33 (256)
T PRK08017 3 KSVLITGCSSGIGLEAALELKRRG-YRVLAAC 33 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHHCC-CEEEEEe
Confidence 46999999 999999999998775 5665553
No 464
>PRK10217 dTDP-glucose 4,6-dehydratase; Provisional
Probab=60.41 E-value=13 Score=34.29 Aligned_cols=32 Identities=34% Similarity=0.385 Sum_probs=24.7
Q ss_pred eEEEEEec-CHHHHHHHHHHHcCCCcEEEEEecC
Q 022491 7 IKIGINGF-GRIGRLVARVALQRDDVELVAVNDP 39 (296)
Q Consensus 7 i~vgI~G~-G~iG~~l~r~l~~~p~~elv~i~~~ 39 (296)
.||-|.|+ |++|+.+++.|.++. .+++.+.++
T Consensus 2 ~~vlVtGatGfIG~~l~~~L~~~g-~~~v~~~~~ 34 (355)
T PRK10217 2 RKILITGGAGFIGSALVRYIINET-SDAVVVVDK 34 (355)
T ss_pred cEEEEEcCCcHHHHHHHHHHHHcC-CCEEEEEec
Confidence 58999999 999999999999875 333444343
No 465
>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic
Probab=60.34 E-value=58 Score=29.63 Aligned_cols=30 Identities=27% Similarity=0.557 Sum_probs=22.5
Q ss_pred EEEEEecCHHHHHHHHHHHcCCCcEEEEEec
Q 022491 8 KIGINGFGRIGRLVARVALQRDDVELVAVND 38 (296)
Q Consensus 8 ~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~ 38 (296)
++.|.|.|.+|+.+++++.... .++..+..
T Consensus 172 ~vlV~g~g~vG~~~~~~a~~~G-~~v~~~~~ 201 (337)
T cd05283 172 RVGVVGIGGLGHLAVKFAKALG-AEVTAFSR 201 (337)
T ss_pred EEEEECCcHHHHHHHHHHHHcC-CeEEEEcC
Confidence 6888777999999988877764 56655543
No 466
>PRK09897 hypothetical protein; Provisional
Probab=60.20 E-value=12 Score=37.34 Aligned_cols=32 Identities=25% Similarity=0.284 Sum_probs=24.0
Q ss_pred eEEEEEecCHHHHHHHHHHHcC-CCcEEEEEecC
Q 022491 7 IKIGINGFGRIGRLVARVALQR-DDVELVAVNDP 39 (296)
Q Consensus 7 i~vgI~G~G~iG~~l~r~l~~~-p~~elv~i~~~ 39 (296)
.+|+|||+|..|..++..|..+ ..++|. |.++
T Consensus 2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~-lfEp 34 (534)
T PRK09897 2 KKIAIVGAGPTGIYTFFSLLQQQTPLSIS-IFEQ 34 (534)
T ss_pred CeEEEECCcHHHHHHHHHHHhcCCCCcEE-EEec
Confidence 6899999999999999888764 335543 3344
No 467
>PRK09291 short chain dehydrogenase; Provisional
Probab=60.08 E-value=15 Score=31.86 Aligned_cols=30 Identities=27% Similarity=0.218 Sum_probs=25.0
Q ss_pred eEEEEEec-CHHHHHHHHHHHcCCCcEEEEEe
Q 022491 7 IKIGINGF-GRIGRLVARVALQRDDVELVAVN 37 (296)
Q Consensus 7 i~vgI~G~-G~iG~~l~r~l~~~p~~elv~i~ 37 (296)
.++-|.|+ |.+|+.+++.|.++. .+++++.
T Consensus 3 ~~vlVtGasg~iG~~ia~~l~~~G-~~v~~~~ 33 (257)
T PRK09291 3 KTILITGAGSGFGREVALRLARKG-HNVIAGV 33 (257)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEe
Confidence 57999999 999999999998875 5666654
No 468
>PRK10083 putative oxidoreductase; Provisional
Probab=60.07 E-value=33 Score=31.18 Aligned_cols=31 Identities=29% Similarity=0.313 Sum_probs=22.3
Q ss_pred EEEEEecCHHHHHHHHHHHc-CCCcEEEEEecC
Q 022491 8 KIGINGFGRIGRLVARVALQ-RDDVELVAVNDP 39 (296)
Q Consensus 8 ~vgI~G~G~iG~~l~r~l~~-~p~~elv~i~~~ 39 (296)
+|.|+|.|-+|..+++++.. .+ +..+.+.+.
T Consensus 163 ~vlI~g~g~vG~~~~~~a~~~~G-~~~v~~~~~ 194 (339)
T PRK10083 163 VALIYGAGPVGLTIVQVLKGVYN-VKAVIVADR 194 (339)
T ss_pred EEEEECCCHHHHHHHHHHHHhCC-CCEEEEEcC
Confidence 68999999999998887775 34 544444443
No 469
>PRK06947 glucose-1-dehydrogenase; Provisional
Probab=59.68 E-value=15 Score=31.70 Aligned_cols=32 Identities=25% Similarity=0.177 Sum_probs=25.7
Q ss_pred CeeEEEEEec-CHHHHHHHHHHHcCCCcEEEEEe
Q 022491 5 KKIKIGINGF-GRIGRLVARVALQRDDVELVAVN 37 (296)
Q Consensus 5 m~i~vgI~G~-G~iG~~l~r~l~~~p~~elv~i~ 37 (296)
||.++-|.|+ |.+|..+++.|.++. .+++.+.
T Consensus 1 m~k~ilItGas~giG~~la~~l~~~g-~~v~~~~ 33 (248)
T PRK06947 1 MRKVVLITGASRGIGRATAVLAAARG-WSVGINY 33 (248)
T ss_pred CCcEEEEeCCCCcHHHHHHHHHHHCC-CEEEEEe
Confidence 4468999999 999999999999875 5665443
No 470
>PRK09135 pteridine reductase; Provisional
Probab=59.21 E-value=18 Score=31.06 Aligned_cols=30 Identities=23% Similarity=0.144 Sum_probs=25.4
Q ss_pred eEEEEEec-CHHHHHHHHHHHcCCCcEEEEEe
Q 022491 7 IKIGINGF-GRIGRLVARVALQRDDVELVAVN 37 (296)
Q Consensus 7 i~vgI~G~-G~iG~~l~r~l~~~p~~elv~i~ 37 (296)
.++-|.|+ |.+|+.+++.|.++. .+++.+.
T Consensus 7 ~~vlItGa~g~iG~~l~~~l~~~g-~~v~~~~ 37 (249)
T PRK09135 7 KVALITGGARRIGAAIARTLHAAG-YRVAIHY 37 (249)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCC-CEEEEEc
Confidence 57999999 999999999999875 6776664
No 471
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=59.11 E-value=15 Score=33.88 Aligned_cols=30 Identities=27% Similarity=0.335 Sum_probs=25.6
Q ss_pred eEEEEEec-CHHHHHHHHHHHcCCCcEEEEEe
Q 022491 7 IKIGINGF-GRIGRLVARVALQRDDVELVAVN 37 (296)
Q Consensus 7 i~vgI~G~-G~iG~~l~r~l~~~p~~elv~i~ 37 (296)
+||-|.|+ |++|+.+++.|.+++ .+++.+.
T Consensus 11 ~~vLVtG~~GfIG~~l~~~L~~~G-~~V~~~~ 41 (353)
T PLN02896 11 GTYCVTGATGYIGSWLVKLLLQRG-YTVHATL 41 (353)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCC-CEEEEEe
Confidence 68999999 999999999999875 5666654
No 472
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=59.01 E-value=13 Score=35.01 Aligned_cols=31 Identities=19% Similarity=0.367 Sum_probs=23.5
Q ss_pred CeeEEEEEecCHHHHHHHHHHHcCCCcEEEEE
Q 022491 5 KKIKIGINGFGRIGRLVARVALQRDDVELVAV 36 (296)
Q Consensus 5 m~i~vgI~G~G~iG~~l~r~l~~~p~~elv~i 36 (296)
|+.+|.|+|+|.+|..++..|.++. ++++-+
T Consensus 1 ~~~dV~IvGaGpaGl~~A~~L~~~G-~~v~v~ 31 (392)
T PRK08243 1 MRTQVAIIGAGPAGLLLGQLLHLAG-IDSVVL 31 (392)
T ss_pred CcceEEEECCCHHHHHHHHHHHhcC-CCEEEE
Confidence 3478999999999999988887653 554333
No 473
>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase. This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.
Probab=58.93 E-value=13 Score=33.04 Aligned_cols=29 Identities=28% Similarity=0.408 Sum_probs=23.4
Q ss_pred EEEEEec-CHHHHHHHHHHHcCCCcEEEEEe
Q 022491 8 KIGINGF-GRIGRLVARVALQRDDVELVAVN 37 (296)
Q Consensus 8 ~vgI~G~-G~iG~~l~r~l~~~p~~elv~i~ 37 (296)
||-|.|+ |++|+.+++.|.++. .++..+.
T Consensus 1 kilv~G~tG~iG~~l~~~l~~~g-~~v~~~~ 30 (287)
T TIGR01214 1 RILITGANGQLGRELVQQLSPEG-RVVVALT 30 (287)
T ss_pred CEEEEcCCCHHHHHHHHHHHhcC-CEEEEeC
Confidence 5789999 999999999998864 4665553
No 474
>PRK07023 short chain dehydrogenase; Provisional
Probab=58.65 E-value=15 Score=31.73 Aligned_cols=30 Identities=20% Similarity=0.382 Sum_probs=25.1
Q ss_pred eEEEEEec-CHHHHHHHHHHHcCCCcEEEEEe
Q 022491 7 IKIGINGF-GRIGRLVARVALQRDDVELVAVN 37 (296)
Q Consensus 7 i~vgI~G~-G~iG~~l~r~l~~~p~~elv~i~ 37 (296)
+++-|.|+ |.+|+.+++.|.++. .+++.+.
T Consensus 2 ~~vlItGasggiG~~ia~~l~~~G-~~v~~~~ 32 (243)
T PRK07023 2 VRAIVTGHSRGLGAALAEQLLQPG-IAVLGVA 32 (243)
T ss_pred ceEEEecCCcchHHHHHHHHHhCC-CEEEEEe
Confidence 58999999 999999999998875 6666553
No 475
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=58.62 E-value=14 Score=34.55 Aligned_cols=30 Identities=17% Similarity=0.191 Sum_probs=23.8
Q ss_pred eEEEEEecCHHHHHHHHHHHcC--CCcEEEEE
Q 022491 7 IKIGINGFGRIGRLVARVALQR--DDVELVAV 36 (296)
Q Consensus 7 i~vgI~G~G~iG~~l~r~l~~~--p~~elv~i 36 (296)
.+|.|+|+|..|..++-.|.++ ..++++-+
T Consensus 4 ~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~ 35 (395)
T PRK05732 4 MDVIIVGGGMAGATLALALSRLSHGGLPVALI 35 (395)
T ss_pred CCEEEECcCHHHHHHHHHhhhcccCCCEEEEE
Confidence 6899999999999999888776 24665444
No 476
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=58.50 E-value=12 Score=35.59 Aligned_cols=29 Identities=28% Similarity=0.406 Sum_probs=23.7
Q ss_pred eEEEEEecCHHHHHHHHHHHcCCCcEEEEE
Q 022491 7 IKIGINGFGRIGRLVARVALQRDDVELVAV 36 (296)
Q Consensus 7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i 36 (296)
|||.|+|.||+|....-.|.++. =+++++
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~G-HeVv~v 29 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAELG-HEVVCV 29 (414)
T ss_pred CceEEECCchHHHHHHHHHHHcC-CeEEEE
Confidence 58999999999999888888764 456666
No 477
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=58.33 E-value=39 Score=31.36 Aligned_cols=91 Identities=21% Similarity=0.290 Sum_probs=52.0
Q ss_pred EEEEEecCHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEE--EEEecC
Q 022491 8 KIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPV--AVFGFR 85 (296)
Q Consensus 8 ~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i--~~~~~~ 85 (296)
.++|.|.|-+|..++.-.....--+|.+|- . +.+ -++....++. +-.+|-+.. ++.+ .
T Consensus 195 tvAVfGLG~VGLav~~Gaka~GAsrIIgvD-i--N~~----Kf~~ak~fGa------------Te~iNp~d~~~~i~e-v 254 (375)
T KOG0022|consen 195 TVAVFGLGGVGLAVAMGAKAAGASRIIGVD-I--NPD----KFEKAKEFGA------------TEFINPKDLKKPIQE-V 254 (375)
T ss_pred EEEEEecchHHHHHHHhHHhcCcccEEEEe-c--CHH----HHHHHHhcCc------------ceecChhhccccHHH-H
Confidence 589999999999998887777777888883 3 222 1122222221 011111100 0100 0
Q ss_pred CCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCC
Q 022491 86 NPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGA 121 (296)
Q Consensus 86 d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~ 121 (296)
..++ .+.++|+-|+|+|.-..+..+-.....|+
T Consensus 255 -i~Em--TdgGvDysfEc~G~~~~m~~al~s~h~Gw 287 (375)
T KOG0022|consen 255 -IIEM--TDGGVDYSFECIGNVSTMRAALESCHKGW 287 (375)
T ss_pred -HHHH--hcCCceEEEEecCCHHHHHHHHHHhhcCC
Confidence 0111 24689999999999777666555555564
No 478
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=58.05 E-value=52 Score=30.46 Aligned_cols=31 Identities=29% Similarity=0.440 Sum_probs=23.6
Q ss_pred eEEEEEecCHHHHHHHHHHHcCCCcEEEEEe
Q 022491 7 IKIGINGFGRIGRLVARVALQRDDVELVAVN 37 (296)
Q Consensus 7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~ 37 (296)
-+|.|+|+|.+|..+++++....--+++++.
T Consensus 189 ~~VlV~G~g~vG~~a~q~ak~~G~~~vi~~~ 219 (369)
T cd08301 189 STVAIFGLGAVGLAVAEGARIRGASRIIGVD 219 (369)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCeEEEEc
Confidence 3689999999999999888776522565553
No 479
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=58.03 E-value=16 Score=32.93 Aligned_cols=25 Identities=20% Similarity=0.300 Sum_probs=19.7
Q ss_pred eEEEEEecCHHHHHHHHHHHcCCCcE
Q 022491 7 IKIGINGFGRIGRLVARVALQRDDVE 32 (296)
Q Consensus 7 i~vgI~G~G~iG~~l~r~l~~~p~~e 32 (296)
.+|.|+|+|..|..++..|.++. ++
T Consensus 2 ~dV~IvGaG~aGl~~A~~L~~~G-~~ 26 (356)
T PF01494_consen 2 YDVAIVGAGPAGLAAALALARAG-ID 26 (356)
T ss_dssp EEEEEE--SHHHHHHHHHHHHTT-CE
T ss_pred ceEEEECCCHHHHHHHHHHHhcc-cc
Confidence 58999999999999999998874 44
No 480
>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases. linked to 3D####ucture
Probab=57.99 E-value=20 Score=34.55 Aligned_cols=17 Identities=29% Similarity=0.231 Sum_probs=13.8
Q ss_pred eEEEEEecCHHHHHHHH
Q 022491 7 IKIGINGFGRIGRLVAR 23 (296)
Q Consensus 7 i~vgI~G~G~iG~~l~r 23 (296)
+||+|+|+|.+|..+.-
T Consensus 1 ~KIaIIGaGs~G~a~a~ 17 (423)
T cd05297 1 IKIAFIGAGSVVFTKNL 17 (423)
T ss_pred CeEEEECCChHHhHHHH
Confidence 48999999999987443
No 481
>PRK12464 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional
Probab=57.89 E-value=12 Score=35.52 Aligned_cols=103 Identities=16% Similarity=0.143 Sum_probs=56.5
Q ss_pred EEec-CHHHHHHHHHHHcCCC-cEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCc---eeE--ECCEEEEEEe
Q 022491 11 INGF-GRIGRLVARVALQRDD-VELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEK---TLL--FGEKPVAVFG 83 (296)
Q Consensus 11 I~G~-G~iG~~l~r~l~~~p~-~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~---~l~--~~~~~i~~~~ 83 (296)
|.|. |-||+..+..+.++|+ +++++++.. ++.+.+.... ..-.|++- ...+.. .+. ..+..+.++.
T Consensus 1 ILGsTGSIG~qtLdVi~~~~d~f~v~~Laa~-~n~~~L~~q~--~~f~p~~v----~i~~~~~~~~l~~~l~~~~~~v~~ 73 (383)
T PRK12464 1 ILGSTGSIGTSALDVVSAHPEHFKVVGLTAN-YNIELLEQQI--KRFQPRIV----SVADKELADTLRTRLSANTSKITY 73 (383)
T ss_pred CCccccHHHHHHHHHHHhCccccEEEEEECC-CCHHHHHHHH--HHhCCCEE----EEcCHHHHHHHHHhccCCCcEEEE
Confidence 6799 9999999999999876 999999876 5654333321 11112111 110100 000 0111122222
Q ss_pred cC-CCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCC
Q 022491 84 FR-NPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGA 121 (296)
Q Consensus 84 ~~-d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~ 121 (296)
.. ...++ -...++|+|+.+.-.+.-..-.-.++++|.
T Consensus 74 G~~~l~~l-~~~~~~D~vv~AivG~aGL~pt~~Ai~~gk 111 (383)
T PRK12464 74 GTDGLIAV-ATHPGSDLVLSSVVGAAGLLPTIEALKAKK 111 (383)
T ss_pred CHHHHHHH-HcCCCCCEEEEhhhcHhhHHHHHHHHHCCC
Confidence 11 11111 012468999999887766666667778885
No 482
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=57.76 E-value=32 Score=31.05 Aligned_cols=32 Identities=13% Similarity=0.202 Sum_probs=24.0
Q ss_pred eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP 39 (296)
Q Consensus 7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~ 39 (296)
.++-|+|+|=+++.++..|.+..--+ +.|.++
T Consensus 123 ~~vlilGaGGaarAi~~aL~~~g~~~-i~i~nR 154 (272)
T PRK12550 123 LVVALRGSGGMAKAVAAALRDAGFTD-GTIVAR 154 (272)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCE-EEEEeC
Confidence 37999999999999999998765334 444444
No 483
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=57.42 E-value=14 Score=34.90 Aligned_cols=28 Identities=21% Similarity=0.363 Sum_probs=22.2
Q ss_pred CeeEEEEEecCHHHHHHHHHHHcCCCcEE
Q 022491 5 KKIKIGINGFGRIGRLVARVALQRDDVEL 33 (296)
Q Consensus 5 m~i~vgI~G~G~iG~~l~r~l~~~p~~el 33 (296)
|+.+|.|+|+|..|..++..|.+.. +++
T Consensus 1 ~~~dV~IVGaG~aGl~~A~~L~~~G-~~v 28 (390)
T TIGR02360 1 MKTQVAIIGAGPSGLLLGQLLHKAG-IDN 28 (390)
T ss_pred CCceEEEECccHHHHHHHHHHHHCC-CCE
Confidence 3468999999999999998887653 444
No 484
>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=57.41 E-value=15 Score=32.84 Aligned_cols=29 Identities=21% Similarity=0.307 Sum_probs=24.1
Q ss_pred EEEEEec-CHHHHHHHHHHHcCCCcEEEEEe
Q 022491 8 KIGINGF-GRIGRLVARVALQRDDVELVAVN 37 (296)
Q Consensus 8 ~vgI~G~-G~iG~~l~r~l~~~p~~elv~i~ 37 (296)
+|-|.|+ |++|+.|++.|.+. ..++.++.
T Consensus 2 ~ILVtG~tGfiG~~l~~~L~~~-g~~V~~~~ 31 (314)
T COG0451 2 RILVTGGAGFIGSHLVERLLAA-GHDVRGLD 31 (314)
T ss_pred eEEEEcCcccHHHHHHHHHHhC-CCeEEEEe
Confidence 4899999 99999999999987 45666664
No 485
>PRK09126 hypothetical protein; Provisional
Probab=57.41 E-value=14 Score=34.43 Aligned_cols=31 Identities=19% Similarity=0.221 Sum_probs=24.3
Q ss_pred CeeEEEEEecCHHHHHHHHHHHcCCCcEEEEE
Q 022491 5 KKIKIGINGFGRIGRLVARVALQRDDVELVAV 36 (296)
Q Consensus 5 m~i~vgI~G~G~iG~~l~r~l~~~p~~elv~i 36 (296)
|+.+|.|+|+|..|..++..|.++. ++++-+
T Consensus 2 ~~~dviIvGgG~aGl~~A~~L~~~G-~~v~v~ 32 (392)
T PRK09126 2 MHSDIVVVGAGPAGLSFARSLAGSG-LKVTLI 32 (392)
T ss_pred CcccEEEECcCHHHHHHHHHHHhCC-CcEEEE
Confidence 4478999999999999998888764 554444
No 486
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=57.37 E-value=14 Score=34.47 Aligned_cols=26 Identities=27% Similarity=0.227 Sum_probs=21.7
Q ss_pred eEEEEEecCHHHHHHHHHHHcCCCcEE
Q 022491 7 IKIGINGFGRIGRLVARVALQRDDVEL 33 (296)
Q Consensus 7 i~vgI~G~G~iG~~l~r~l~~~p~~el 33 (296)
.+|.|+|+|.+|..++..|.++. +++
T Consensus 2 ~dV~IvGgG~~Gl~~A~~L~~~G-~~v 27 (374)
T PRK06617 2 SNTVILGCGLSGMLTALSFAQKG-IKT 27 (374)
T ss_pred ccEEEECCCHHHHHHHHHHHcCC-CeE
Confidence 68999999999999998887764 444
No 487
>PRK02318 mannitol-1-phosphate 5-dehydrogenase; Provisional
Probab=57.36 E-value=12 Score=35.33 Aligned_cols=31 Identities=29% Similarity=0.307 Sum_probs=23.8
Q ss_pred eEEEEEecCHHHHHHHHHHHcCCCcEEEEEe
Q 022491 7 IKIGINGFGRIGRLVARVALQRDDVELVAVN 37 (296)
Q Consensus 7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~ 37 (296)
|||.++|+|.+|+.++-.++.+...+|+.|.
T Consensus 1 mki~~~GaGa~gr~~~~~~l~~~g~~V~~vd 31 (381)
T PRK02318 1 MKAVHFGAGNIGRGFIGKLLADNGFEVTFVD 31 (381)
T ss_pred CceEEECCchhhHHHHHHHHHhCCCeEEEEE
Confidence 4799999999999776655555557777775
No 488
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=57.09 E-value=19 Score=31.20 Aligned_cols=29 Identities=21% Similarity=0.167 Sum_probs=24.4
Q ss_pred eEEEEEec-CHHHHHHHHHHHcCCCcEEEEE
Q 022491 7 IKIGINGF-GRIGRLVARVALQRDDVELVAV 36 (296)
Q Consensus 7 i~vgI~G~-G~iG~~l~r~l~~~p~~elv~i 36 (296)
.++-|.|+ |.+|+.+++.|.++. .+++.+
T Consensus 11 k~vlItGa~g~iG~~ia~~l~~~G-~~V~~~ 40 (255)
T PRK07523 11 RRALVTGSSQGIGYALAEGLAQAG-AEVILN 40 (255)
T ss_pred CEEEEECCcchHHHHHHHHHHHcC-CEEEEE
Confidence 58999999 999999999998875 576654
No 489
>PRK06475 salicylate hydroxylase; Provisional
Probab=57.02 E-value=13 Score=35.02 Aligned_cols=26 Identities=23% Similarity=0.035 Sum_probs=21.1
Q ss_pred eEEEEEecCHHHHHHHHHHHcCCCcEE
Q 022491 7 IKIGINGFGRIGRLVARVALQRDDVEL 33 (296)
Q Consensus 7 i~vgI~G~G~iG~~l~r~l~~~p~~el 33 (296)
.||.|+|+|..|..++.+|.++. +++
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~G-~~V 28 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAARG-WAV 28 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhCC-CcE
Confidence 57999999999999988887653 443
No 490
>PRK06753 hypothetical protein; Provisional
Probab=56.85 E-value=15 Score=34.12 Aligned_cols=26 Identities=31% Similarity=0.336 Sum_probs=21.4
Q ss_pred eEEEEEecCHHHHHHHHHHHcCCCcEE
Q 022491 7 IKIGINGFGRIGRLVARVALQRDDVEL 33 (296)
Q Consensus 7 i~vgI~G~G~iG~~l~r~l~~~p~~el 33 (296)
++|.|+|+|.+|..++..|.++. +++
T Consensus 1 ~~V~IvGgG~aGl~~A~~L~~~g-~~v 26 (373)
T PRK06753 1 MKIAIIGAGIGGLTAAALLQEQG-HEV 26 (373)
T ss_pred CEEEEECCCHHHHHHHHHHHhCC-CcE
Confidence 47999999999999998887764 443
No 491
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=56.66 E-value=20 Score=33.20 Aligned_cols=31 Identities=29% Similarity=0.464 Sum_probs=24.0
Q ss_pred eEEEEEecCHHHHHHHHHHHcCC-CcEEEEEe
Q 022491 7 IKIGINGFGRIGRLVARVALQRD-DVELVAVN 37 (296)
Q Consensus 7 i~vgI~G~G~iG~~l~r~l~~~p-~~elv~i~ 37 (296)
-||.|+|.|.+|.+-+|...... ++.+.-+|
T Consensus 169 ~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n 200 (371)
T COG0686 169 AKVVVLGGGVVGTNAAKIAIGLGADVTILDLN 200 (371)
T ss_pred ccEEEECCccccchHHHHHhccCCeeEEEecC
Confidence 47999999999999999987654 45554443
No 492
>PRK06996 hypothetical protein; Provisional
Probab=56.63 E-value=17 Score=34.23 Aligned_cols=28 Identities=32% Similarity=0.431 Sum_probs=23.0
Q ss_pred CCCCCeeEEEEEecCHHHHHHHHHHHcCC
Q 022491 1 MAGDKKIKIGINGFGRIGRLVARVALQRD 29 (296)
Q Consensus 1 m~~~m~i~vgI~G~G~iG~~l~r~l~~~p 29 (296)
|+. |..+|.|+|+|.+|..++-.|.++.
T Consensus 7 ~~~-~~~dv~IvGgGpaG~~~A~~L~~~g 34 (398)
T PRK06996 7 MAA-PDFDIAIVGAGPVGLALAGWLARRS 34 (398)
T ss_pred ccC-CCCCEEEECcCHHHHHHHHHHhcCC
Confidence 443 3478999999999999999988765
No 493
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=56.45 E-value=19 Score=34.41 Aligned_cols=31 Identities=16% Similarity=0.219 Sum_probs=25.1
Q ss_pred eeEEEEEecCHHHHHHHHHHHcCCCcEEEEEe
Q 022491 6 KIKIGINGFGRIGRLVARVALQRDDVELVAVN 37 (296)
Q Consensus 6 ~i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~ 37 (296)
+.||.|+|+|+.|..+++.|. .++.+|+-|.
T Consensus 10 ~~~vVIvGgG~aGl~~a~~L~-~~~~~ItlI~ 40 (424)
T PTZ00318 10 KPNVVVLGTGWAGAYFVRNLD-PKKYNITVIS 40 (424)
T ss_pred CCeEEEECCCHHHHHHHHHhC-cCCCeEEEEc
Confidence 468999999999999988884 3467877774
No 494
>PRK07588 hypothetical protein; Provisional
Probab=56.27 E-value=14 Score=34.61 Aligned_cols=27 Identities=26% Similarity=0.271 Sum_probs=22.0
Q ss_pred eEEEEEecCHHHHHHHHHHHcCCCcEEE
Q 022491 7 IKIGINGFGRIGRLVARVALQRDDVELV 34 (296)
Q Consensus 7 i~vgI~G~G~iG~~l~r~l~~~p~~elv 34 (296)
++|.|+|+|.+|..++..|.++. +++.
T Consensus 1 ~~V~IVGgG~aGl~~A~~L~~~G-~~v~ 27 (391)
T PRK07588 1 MKVAISGAGIAGPTLAYWLRRYG-HEPT 27 (391)
T ss_pred CeEEEECccHHHHHHHHHHHHCC-CceE
Confidence 47999999999999999888764 5543
No 495
>PRK06179 short chain dehydrogenase; Provisional
Probab=56.16 E-value=22 Score=31.23 Aligned_cols=30 Identities=17% Similarity=0.165 Sum_probs=24.7
Q ss_pred eEEEEEec-CHHHHHHHHHHHcCCCcEEEEEe
Q 022491 7 IKIGINGF-GRIGRLVARVALQRDDVELVAVN 37 (296)
Q Consensus 7 i~vgI~G~-G~iG~~l~r~l~~~p~~elv~i~ 37 (296)
.++-|.|+ |.+|+++++.|.++. .+++.+.
T Consensus 5 ~~vlVtGasg~iG~~~a~~l~~~g-~~V~~~~ 35 (270)
T PRK06179 5 KVALVTGASSGIGRATAEKLARAG-YRVFGTS 35 (270)
T ss_pred CEEEEecCCCHHHHHHHHHHHHCC-CEEEEEe
Confidence 57999999 999999999999875 5665553
No 496
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=56.00 E-value=14 Score=35.39 Aligned_cols=30 Identities=27% Similarity=0.187 Sum_probs=25.0
Q ss_pred EEEEEecCHHHHHHHHHHHcC-CCcEEEEEe
Q 022491 8 KIGINGFGRIGRLVARVALQR-DDVELVAVN 37 (296)
Q Consensus 8 ~vgI~G~G~iG~~l~r~l~~~-p~~elv~i~ 37 (296)
||.|+|+|..|...++.|.++ ++.+++-|.
T Consensus 2 ~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~ 32 (444)
T PRK09564 2 KIIIIGGTAAGMSAAAKAKRLNKELEITVYE 32 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHHCCCCcEEEEE
Confidence 799999999999999988764 557777664
No 497
>PRK06988 putative formyltransferase; Provisional
Probab=55.87 E-value=17 Score=33.50 Aligned_cols=33 Identities=21% Similarity=0.273 Sum_probs=27.2
Q ss_pred CeeEEEEEecCHHHHHHHHHHHcCCCcEEEEEec
Q 022491 5 KKIKIGINGFGRIGRLVARVALQRDDVELVAVND 38 (296)
Q Consensus 5 m~i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~ 38 (296)
||+||.+.|.+..|...++.|.++. +++++|..
T Consensus 1 ~~mkIvf~Gs~~~a~~~L~~L~~~~-~~i~~Vvt 33 (312)
T PRK06988 1 MKPRAVVFAYHNVGVRCLQVLLARG-VDVALVVT 33 (312)
T ss_pred CCcEEEEEeCcHHHHHHHHHHHhCC-CCEEEEEc
Confidence 3479999999999999999998764 77777764
No 498
>TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family. These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff.
Probab=55.64 E-value=20 Score=29.71 Aligned_cols=31 Identities=39% Similarity=0.458 Sum_probs=26.6
Q ss_pred EEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491 8 KIGINGFGRIGRLVARVALQRDDVELVAVNDP 39 (296)
Q Consensus 8 ~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~ 39 (296)
++.|+|+|..|+++++.|.++ ..++++..|.
T Consensus 1 ~~~I~Gag~~g~~~~~~l~~~-g~~vvgfid~ 31 (201)
T TIGR03570 1 KLVIIGAGGHGRVVADIAEDS-GWEIVGFLDD 31 (201)
T ss_pred CEEEEcCCHHHHHHHHHHHhC-CCEEEEEEcC
Confidence 478999999999999999865 5889888765
No 499
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=55.48 E-value=23 Score=30.30 Aligned_cols=30 Identities=27% Similarity=0.231 Sum_probs=24.9
Q ss_pred eEEEEEec-CHHHHHHHHHHHcCCCcEEEEEe
Q 022491 7 IKIGINGF-GRIGRLVARVALQRDDVELVAVN 37 (296)
Q Consensus 7 i~vgI~G~-G~iG~~l~r~l~~~p~~elv~i~ 37 (296)
.++-|.|+ |.+|+.+++.|.++. .+++.+.
T Consensus 8 ~~vlVtG~sg~iG~~l~~~L~~~G-~~Vi~~~ 38 (239)
T PRK07666 8 KNALITGAGRGIGRAVAIALAKEG-VNVGLLA 38 (239)
T ss_pred CEEEEEcCCchHHHHHHHHHHHCC-CEEEEEe
Confidence 46999999 999999999998876 4766654
No 500
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=55.35 E-value=83 Score=29.14 Aligned_cols=31 Identities=16% Similarity=0.367 Sum_probs=23.2
Q ss_pred eEEEEEecCHHHHHHHHHHHcCCCcEEEEEe
Q 022491 7 IKIGINGFGRIGRLVARVALQRDDVELVAVN 37 (296)
Q Consensus 7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~ 37 (296)
-+|.|+|+|-+|...++++....--.++++.
T Consensus 188 ~~VlV~G~G~vG~~a~~~ak~~G~~~vi~~~ 218 (368)
T cd08300 188 STVAVFGLGAVGLAVIQGAKAAGASRIIGID 218 (368)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCeEEEEe
Confidence 3689999999999999888877522455553
Done!