RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 022491
(296 letters)
>d1u8fo2 d.81.1.1 (O:152-315) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Human(Homo sapiens), liver
isoform [TaxId: 9606]}
Length = 164
Score = 228 bits (582), Expect = 2e-76
Identities = 108/140 (77%), Positives = 119/140 (85%)
Query: 157 CTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSST 216
CTTNCLAPLAKVIHD FGIVEGLMTTVH+ITATQKTVDGPS K WR GR A NIIP+ST
Sbjct: 1 CTTNCLAPLAKVIHDNFGIVEGLMTTVHAITATQKTVDGPSGKLWRDGRGALQNIIPAST 60
Query: 217 GAAKAVGKVLPALNGKLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLK 276
GAAKAVGKV+P LNGKLTGM+FRVPT +VSVVDLT RLEK A Y++IK +K+ SEG LK
Sbjct: 61 GAAKAVGKVIPELNGKLTGMAFRVPTANVSVVDLTCRLEKPAKYDDIKKVVKQASEGPLK 120
Query: 277 GILGYTEEDVVSTDFVGDSR 296
GILGYTE VVS+DF D+
Sbjct: 121 GILGYTEHQVVSSDFNSDTH 140
>d3cmco2 d.81.1.1 (O:149-312) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Bacillus stearothermophilus, nca
1503 [TaxId: 1422]}
Length = 163
Score = 219 bits (560), Expect = 5e-73
Identities = 85/140 (60%), Positives = 105/140 (75%), Gaps = 1/140 (0%)
Query: 157 CTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSST 216
CTTNCLAP AKV+H++FGIV G+MTTVHS T Q+ +D P KD R RAA+ +IIP++T
Sbjct: 1 CTTNCLAPFAKVLHEQFGIVRGMMTTVHSYTNDQRILDLP-HKDLRRARAAAESIIPTTT 59
Query: 217 GAAKAVGKVLPALNGKLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLK 276
GAAKAV VLP L GKL GM+ RVPT +VSVVDL LEKE T EE+ A+K +EG+LK
Sbjct: 60 GAAKAVALVLPELKGKLNGMAMRVPTPNVSVVDLVAELEKEVTVEEVNAALKAAAEGELK 119
Query: 277 GILGYTEEDVVSTDFVGDSR 296
GIL Y+EE +VS D+ G +
Sbjct: 120 GILAYSEEPLVSRDYNGSTV 139
>d1rm4a2 d.81.1.1 (A:149-312) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Spinach (Spinacia oleracea)
[TaxId: 3562]}
Length = 163
Score = 215 bits (550), Expect = 2e-71
Identities = 73/140 (52%), Positives = 94/140 (67%), Gaps = 1/140 (0%)
Query: 157 CTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSST 216
CTTNCLAP KV+ KFGI++G MTT HS T Q+ +D +D R RAA NI+P+ST
Sbjct: 1 CTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDAS-HRDLRRARAACLNIVPTST 59
Query: 217 GAAKAVGKVLPALNGKLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLK 276
GAAKAV VLP L GKL G++ RVPT +VSVVDL V++ K+ EE+ A +E ++ +LK
Sbjct: 60 GAAKAVALVLPNLKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELK 119
Query: 277 GILGYTEEDVVSTDFVGDSR 296
GIL +E +VS DF
Sbjct: 120 GILSVCDEPLVSIDFRCTDV 139
>d1u8fo1 c.2.1.3 (O:3-151,O:316-335) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Human(Homo sapiens), liver
isoform [TaxId: 9606]}
Length = 169
Score = 212 bits (540), Expect = 6e-70
Identities = 85/164 (51%), Positives = 113/164 (68%), Gaps = 2/164 (1%)
Query: 6 KIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELK 65
K+K+G+NGFGRIGRLV R A V++VA+NDPFI +YM YMF+YDS HG++ +K
Sbjct: 1 KVKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLNYMVYMFQYDSTHGKFHG-TVK 59
Query: 66 VKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVV 125
+ L+ P+ +F R+P +I W GAEYVVESTGVFT +KA AHL+GGAK+V+
Sbjct: 60 A-ENGKLVINGNPITIFQERDPSKIKWGDAGAEYVVESTGVFTTMEKAGAHLQGGAKRVI 118
Query: 126 ISAPSKDAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVI 169
ISAPS DAPMFV+GVN ++Y L I+SNAS + ++
Sbjct: 119 ISAPSADAPMFVMGVNHEKYDNSLKIISNASNEFGYSNRVVDLM 162
>d1obfo2 d.81.1.1 (O:153-314) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Achromobacter xylosoxidans
[TaxId: 85698]}
Length = 162
Score = 209 bits (533), Expect = 6e-69
Identities = 72/141 (51%), Positives = 96/141 (68%), Gaps = 1/141 (0%)
Query: 156 SCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSS 215
SCTTNCLAPL K ++DK G+ +GLMTTVH+ T Q D +D R R+A+ ++IP+
Sbjct: 1 SCTTNCLAPLVKPLNDKLGLQDGLMTTVHAYTNNQVLTD-VYHEDLRRARSATMSMIPTK 59
Query: 216 TGAAKAVGKVLPALNGKLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKL 275
TGAA AVG VLP L+GKL G + RVPT++VS+VDL+ ++ T EE+ +K SEG+L
Sbjct: 60 TGAAAAVGDVLPELDGKLNGYAIRVPTINVSIVDLSFVAKRNTTVEEVNGILKAASEGEL 119
Query: 276 KGILGYTEEDVVSTDFVGDSR 296
KGIL Y E +VS D+ D
Sbjct: 120 KGILDYNTEPLVSVDYNHDPA 140
>d1dssg1 c.2.1.3 (G:1-148,G:313-334) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {South China Sea lobster
(Palinurus versicolor) [TaxId: 150436]}
Length = 169
Score = 208 bits (530), Expect = 2e-68
Identities = 93/168 (55%), Positives = 117/168 (69%), Gaps = 3/168 (1%)
Query: 8 KIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVK 67
KIGINGFGRIGRLV R AL+ ++VAVNDPFI+ +YM YMFKYDS HG +K E+K
Sbjct: 2 KIGINGFGRIGRLVLRAALEMG-AQVVAVNDPFIALEYMVYMFKYDSTHGMFKG-EVKA- 58
Query: 68 DEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVIS 127
++ L+ K + VF PE IPW+K GAEY+VESTGVFT +KA+AH KGGAKKV+IS
Sbjct: 59 EDGALVVDGKKITVFNEMKPENIPWSKAGAEYIVESTGVFTTIEKASAHFKGGAKKVIIS 118
Query: 128 APSKDAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGI 175
APS DAPMFV GVN ++Y ++ +VSNAS + +I +
Sbjct: 119 APSADAPMFVCGVNLEKYSKDMKVVSNASNEFGYSQRVIDLIKHMQKV 166
>d1rm4a1 c.2.1.3 (A:1-148,A:313-333) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Spinach (Spinacia oleracea)
[TaxId: 3562]}
Length = 172
Score = 203 bits (517), Expect = 2e-66
Identities = 67/173 (38%), Positives = 98/173 (56%), Gaps = 8/173 (4%)
Query: 7 IKIGINGFGRIGRLVARVALQRDD--VELVAVNDPFISTDYMTYMFKYDSVHGQWKHNEL 64
+K+ INGFGRIGR R R D +++V +ND +++ KYDS+ G + +
Sbjct: 1 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVINDTG-GVKQASHLLKYDSILGTFDADV- 58
Query: 65 KVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKV 124
K + + K + V RNP +PW G + V+E TGVF D+D A HL+ GAKKV
Sbjct: 59 KTAGDSAISVDGKVIKVVSDRNPVNLPWGDMGIDLVIEGTGVFVDRDGAGKHLQAGAKKV 118
Query: 125 VISAPSK-DAPMFVVGVNEKEYKPELDIVSNASCT---TNCLAPLAKVIHDKF 173
+I+AP K D P +VVGVNE+ Y I+SNAS + + LA ++ +K+
Sbjct: 119 LITAPGKGDIPTYVVGVNEEGYTHADTIISNASNEWGYSQRVVDLADIVANKW 171
>d2g82a2 d.81.1.1 (A:149-310) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Thermus aquaticus [TaxId: 271]}
Length = 162
Score = 196 bits (500), Expect = 5e-64
Identities = 73/140 (52%), Positives = 96/140 (68%), Gaps = 1/140 (0%)
Query: 157 CTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSST 216
CTTN LAP+ KV+ + FG+ + LMTTVHS T Q+ +D P KD R RAA+ NIIP++T
Sbjct: 1 CTTNSLAPVMKVLEEAFGVEKALMTTVHSYTNDQRLLDLP-HKDLRRARAAAINIIPTTT 59
Query: 217 GAAKAVGKVLPALNGKLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLK 276
GAAKA VLP+L G+ GM+ RVPT S+ D+T L++E T EE+ A+K +EG LK
Sbjct: 60 GAAKATALVLPSLKGRFDGMALRVPTATGSISDITALLKREVTAEEVNAALKAAAEGPLK 119
Query: 277 GILGYTEEDVVSTDFVGDSR 296
GIL YTE+++V D V D
Sbjct: 120 GILAYTEDEIVLQDIVMDPH 139
>d1gado1 c.2.1.3 (O:0-148,O:313-330) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Escherichia coli [TaxId: 562]}
Length = 166
Score = 193 bits (493), Expect = 6e-63
Identities = 76/165 (46%), Positives = 103/165 (62%), Gaps = 5/165 (3%)
Query: 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKV 66
IK+GINGFGRIGR+V R A +R D+E+VA+ND + DYM YM KYDS HG++ ++V
Sbjct: 2 IKVGINGFGRIGRIVFRAAQKRSDIEIVAIND-LLDADYMAYMLKYDSTHGRFDG-TVEV 59
Query: 67 KDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVI 126
KD L+ K + V R+P + W + G + V E+TG+F + A H+ GAKKVV+
Sbjct: 60 KDGH-LIVNGKKIRVTAERDPANLKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVVM 118
Query: 127 SAPSKD-APMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIH 170
+ PSKD PMFV G N +Y + DIVSNAS T + +I
Sbjct: 119 TGPSKDNTPMFVKGANFDKYAGQ-DIVSNASNETGYSNKVLDLIA 162
>d1k3ta2 d.81.1.1 (A:165-333) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Trypanosoma cruzi [TaxId: 5693]}
Length = 169
Score = 193 bits (491), Expect = 1e-62
Identities = 92/142 (64%), Positives = 114/142 (80%), Gaps = 1/142 (0%)
Query: 156 SCTTNCLAPLAKV-IHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPS 214
SCTTNCLAP+ V + + FG+ GLMTT+HS TATQKTVDG S+KDWRGGRAA+ NIIPS
Sbjct: 1 SCTTNCLAPIVHVLVKEGFGVQTGLMTTIHSYTATQKTVDGVSVKDWRGGRAAAVNIIPS 60
Query: 215 STGAAKAVGKVLPALNGKLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGK 274
+TGAAKAVG V+P+ GKLTGMSFRVPT DVSVVDLT ++ + +EI A+K S+
Sbjct: 61 TTGAAKAVGMVIPSTQGKLTGMSFRVPTPDVSVVDLTFTAARDTSIQEIDAALKRASKTY 120
Query: 275 LKGILGYTEEDVVSTDFVGDSR 296
+KGILGYT+E++VS DF+ D+R
Sbjct: 121 MKGILGYTDEELVSADFINDNR 142
>d1hdgo1 c.2.1.3 (O:1-148,O:313-331) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Thermotoga maritima [TaxId:
2336]}
Length = 169
Score = 191 bits (486), Expect = 1e-61
Identities = 68/172 (39%), Positives = 104/172 (60%), Gaps = 8/172 (4%)
Query: 8 KIGINGFGRIGRLVARVALQRD--DVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELK 65
++ INGFGRIGRLV R+ +R D+E+VA+ND T + ++ KYDSVH ++ K
Sbjct: 2 RVAINGFGRIGRLVYRIIYERKNPDIEVVAIND-LTDTKTLAHLLKYDSVHKKFPG---K 57
Query: 66 VK-DEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKV 124
V+ E +L+ K + VF +P ++PW G ++V+ESTGVF +++KA HL+ GAKKV
Sbjct: 58 VEYTENSLIVDGKEIKVFAEPDPSKLPWKDLGVDFVIESTGVFRNREKAELHLQAGAKKV 117
Query: 125 VISAPSKDAPM-FVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGI 175
+I+AP+K + V+G NE + KPE I+S AS + + +
Sbjct: 118 IITAPAKGEDITVVIGCNEDQLKPEHTIISCASNEYGYSNRVVDTLELLLKM 169
>d3cmco1 c.2.1.3 (O:0-148,O:313-333) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Bacillus stearothermophilus, nca
1503 [TaxId: 1422]}
Length = 171
Score = 190 bits (484), Expect = 2e-61
Identities = 71/175 (40%), Positives = 104/175 (59%), Gaps = 7/175 (4%)
Query: 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKV 66
+K+GINGFGRIGR V R AL+ D+E+VAVND + + ++ KYDSVHG+
Sbjct: 2 VKVGINGFGRIGRNVFRAALKNPDIEVVAVND-LTDANTLAHLLKYDSVHGRLDAE--VS 58
Query: 67 KDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVI 126
+ L+ K + V R+PE + W + G + VVESTG FT ++ AA HL+ GAKKV+I
Sbjct: 59 VNGNNLVVNGKEIIVKAERDPENLAWGEIGVDIVVESTGRFTKREDAAKHLEAGAKKVII 118
Query: 127 SAPS-KDAPMFVVGVNEKEYKPELD-IVSNASCTTNCLAPLAKVIHDKFGIVEGL 179
SAP+ + V+GVN+ +Y P+ ++SNAS T + + + +GL
Sbjct: 119 SAPAKNEDITIVMGVNQDKYDPKAHHVISNASNETGYSHRVVDLAA--YIASKGL 171
>d2b4ro1 c.2.1.3 (O:4-152,O:319-335) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Malaria parasite (Plasmodium
falciparum) [TaxId: 5833]}
Length = 166
Score = 189 bits (482), Expect = 3e-61
Identities = 81/169 (47%), Positives = 110/169 (65%), Gaps = 6/169 (3%)
Query: 8 KIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVK 67
K+GINGFGRIGRLV R A R D+E+VA+NDPF+ +++ Y+ KYDSVHGQ+
Sbjct: 2 KLGINGFGRIGRLVFRAAFGRKDIEVVAINDPFMDLNHLCYLLKYDSVHGQFPCE--VTH 59
Query: 68 DEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVIS 127
+ LL GEK V+VF ++P +IPW K + V ESTGVF K+ A++HLKGGAKKV++S
Sbjct: 60 ADGFLLIGEKKVSVFAEKDPSQIPWGKCQVDVVCESTGVFLTKELASSHLKGGAKKVIMS 119
Query: 128 APS-KDAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGI 175
AP D P++V+G+N +Y + IVSNAS +V+ I
Sbjct: 120 APPKDDTPIYVMGINHHQYDTKQLIVSNASN---EWGYSNRVLDLAVHI 165
>d1k3ta1 c.2.1.3 (A:1-164,A:334-359) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Trypanosoma cruzi [TaxId: 5693]}
Length = 190
Score = 185 bits (471), Expect = 3e-59
Identities = 71/183 (38%), Positives = 102/183 (55%), Gaps = 13/183 (7%)
Query: 6 KIKIGINGFGRIGRLVARVALQR----DDVELVAVNDPFISTDYMTYMFKYDSVHGQWKH 61
IK+GINGFGRIGR+V + + ++++VAV D +Y Y +YD+VHG++K+
Sbjct: 2 PIKVGINGFGRIGRMVFQALCEDGLLGTEIDVVAVVDMNTDAEYFAYQMRYDTVHGKFKY 61
Query: 62 NELKVKDEKT-------LLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAA 114
K + ++ G + + V RNP ++PW K G EYV+ESTG+FT K A
Sbjct: 62 EVTTTKSSPSVAKDDTLVVNGHRILCVKAQRNPADLPWGKLGVEYVIESTGLFTAKAAAE 121
Query: 115 AHLKGGAKKVVISAPSK-DAPMFVVGVNEKEYKP-ELDIVSNASCTTNCLAPLAKVIHDK 172
HL+GGA+KVVISAP+ A V+GVN EY P E +VSNA + ++
Sbjct: 122 GHLRGGARKVVISAPASGGAKTLVMGVNHHEYNPSEHHVVSNADNEWGYSHRVVDLVRHM 181
Query: 173 FGI 175
Sbjct: 182 ASK 184
>d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus
[TaxId: 2180]}
Length = 171
Score = 172 bits (436), Expect = 3e-54
Identities = 28/183 (15%), Positives = 61/183 (33%), Gaps = 16/183 (8%)
Query: 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKV 66
+ ING+G +G+ VA Q+DD++++ V+ K
Sbjct: 2 KAVAINGYGTVGKRVADAIAQQDDMKVIGVSKT-RPDFEARMALKKGYDLY-------VA 53
Query: 67 KDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVI 126
E+ LF + + V G + A+ V++ T + + G K +
Sbjct: 54 IPERVKLFEKAGIEVAG-----TVDDMLDEADIVIDCTPEGIGAKNLKMYKEKGIKAIFQ 108
Query: 127 SAPSKDAP--MFVVGVNEKEY-KPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTV 183
+ F N +E + V + + + ++ DK+ + +
Sbjct: 109 GGEKHEDIGLSFNSLSNYEESYGKDYTRVVIVPENVDAVRAILEMEEDKYKSINKTNKAM 168
Query: 184 HSI 186
+ +
Sbjct: 169 NIL 171
>d2g82a1 c.2.1.3 (A:1-148,A:311-330) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Thermus aquaticus [TaxId: 271]}
Length = 168
Score = 166 bits (420), Expect = 6e-52
Identities = 72/171 (42%), Positives = 104/171 (60%), Gaps = 9/171 (5%)
Query: 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKV 66
+K+GINGFGRIGR V R+ R VE+ +ND + ++ KYDS++ ++
Sbjct: 1 MKVGINGFGRIGRQVFRILHSR-GVEVALIND-LTDNKTLAHLLKYDSIYHRFPGE--VA 56
Query: 67 KDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVI 126
D++ L K + ++P+EIPWA+ G V+ESTGVFTD DKA AHL+GGAKKV+I
Sbjct: 57 YDDQYLYVDGKAIRATAVKDPKEIPWAEAGVGVVIESTGVFTDADKAKAHLEGGAKKVII 116
Query: 127 SAPSKDAPM-FVVGVNEKEYKPELD-IVSNASCT---TNCLAPLAKVIHDK 172
+AP+K + V+GVN + Y P I+SNAS N +A L +++ K
Sbjct: 117 TAPAKGEDITIVMGVNHEAYDPSRHHIISNASNEWGYANRVADLVELVLRK 167
>d1obfo1 c.2.1.3 (O:1-152,O:315-335) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Achromobacter xylosoxidans
[TaxId: 85698]}
Length = 173
Score = 162 bits (412), Expect = 1e-50
Identities = 61/187 (32%), Positives = 97/187 (51%), Gaps = 22/187 (11%)
Query: 7 IKIGINGFGRIGRLVARVALQR---DDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNE 63
I++ ING+GRIGR + R + D+E+VA+ND ++ +YD+ HG++
Sbjct: 2 IRVAINGYGRIGRNILRAHYEGGKSHDIEIVAIND-LGDPKTNAHLTRYDTAHGKFPGT- 59
Query: 64 LKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKK 123
+ V ++ G+K + V RNP ++PW + V+E TG FT K+KA AH+KGGAKK
Sbjct: 60 VSVNGSYMVVNGDK-IRVDANRNPAQLPWGALKVDVVLECTGFFTTKEKAGAHIKGGAKK 118
Query: 124 VVISAPSKD--APMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMT 181
V+ISAP V GVN K ++SNA +++G ++
Sbjct: 119 VIISAPGGADVDATVVYGVNHGTLKSTDTVISNAD--------------NEWGFSNRMLD 164
Query: 182 TVHSITA 188
T ++ +
Sbjct: 165 TTVALMS 171
>d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii
[TaxId: 53953]}
Length = 172
Score = 159 bits (404), Expect = 2e-49
Identities = 33/179 (18%), Positives = 61/179 (34%), Gaps = 16/179 (8%)
Query: 6 KIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELK 65
K+K+G+NG+G IG+ VA ++DD+EL+ + D+ Y K + E
Sbjct: 2 KVKVGVNGYGTIGKRVAYAVTKQDDMELIGITK--TKPDFEAYRAKELGIPVYAASEEFI 59
Query: 66 VKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVV 125
+ EK GF + + +V++T + K G K +
Sbjct: 60 PRFEKE-----------GFEVAGTLNDLLEKVDIIVDATPGGIGAKNKPLYEKAGVKAIF 108
Query: 126 ISAPSKDA--PMFVVGVNEKEY-KPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMT 181
D FV N + V + + + ++ I + +
Sbjct: 109 QGGEKADVAEVSFVAQANYEAALGKNYVRVVVIPENIDAIRAMFELADKWDSIKKTNKS 167
>d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus
[TaxId: 2287]}
Length = 178
Score = 145 bits (366), Expect = 1e-43
Identities = 29/191 (15%), Positives = 67/191 (35%), Gaps = 32/191 (16%)
Query: 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKV 66
+ + +NG+G IG+ VA +++ D++LV V + + + ++ V
Sbjct: 2 VNVAVNGYGTIGKRVADAIIKQPDMKLVGVAKTSPNYEAFIAHRRGIRIY---------V 52
Query: 67 KDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVI 126
+ F E + V + ++ VV++T +L+ + +
Sbjct: 53 PQQSIKKFEESGIPV-----AGTVEDLIKTSDIVVDTTPNGVGAQYKPIYLQLQ-RNAIF 106
Query: 127 SAPSKDA---PMFVVGVNEKEY--KPELDIVSNASCTTNCLAPL------------AKVI 169
K F N E K + +VS + + + ++
Sbjct: 107 QGGEKAEVADISFSALCNYNEALGKKYIRVVSESIVVPENIDAIRASMKLMSAEDSMRIT 166
Query: 170 HDKFGIVEGLM 180
++ GI++G +
Sbjct: 167 NESLGILKGYL 177
>d1cf2o2 d.81.1.1 (O:139-303) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus
[TaxId: 2180]}
Length = 165
Score = 133 bits (335), Expect = 4e-39
Identities = 32/145 (22%), Positives = 52/145 (35%), Gaps = 15/145 (10%)
Query: 156 SCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSS 215
SC T L K +HD FGI + V + + IIP+
Sbjct: 1 SCNTTGLCRTLKPLHDSFGIKKVRAVIVRRGA-----------DPAQVSKGPINAIIPNP 49
Query: 216 TGAAKAVGK-VLPALNGKLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGK 274
G V L+ + M+ VPT + ++ V +E+ T ++I + ++
Sbjct: 50 PKLPSHHGPDVKTVLDINIDTMAVIVPTTLMHQHNVMVEVEETPTVDDIIDVFEDTPRVI 109
Query: 275 LKGI---LGYTEEDVVSTDFVGDSR 296
L L T E + +G SR
Sbjct: 110 LISAEDGLTSTAEIMEYAKELGRSR 134
>d1b7go2 d.81.1.1 (O:139-300) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus
[TaxId: 2287]}
Length = 162
Score = 127 bits (320), Expect = 5e-37
Identities = 20/141 (14%), Positives = 45/141 (31%), Gaps = 17/141 (12%)
Query: 157 CTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSST 216
C T L ++ + + T V + + + G S P++
Sbjct: 1 CNTTALLRTICTVNKVSKVEKVRATIVRRAADQK---------EVKKGPINSLVPDPATV 51
Query: 217 GAA--KAVGKVLPALNGKLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESE-- 272
+ K V V+ L + M+ PT + + + + L+ + ++I + ++
Sbjct: 52 PSHHAKDVNSVIRNL--DIATMAVIAPTTLMHMHFINITLKDKVEKKDILSVLENTPRIV 109
Query: 273 --GKLKGILGYTEEDVVSTDF 291
E V+ D
Sbjct: 110 LISSKYDAEATAELVEVARDL 130
>d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid
dehydrogenase (DAPDH) {Corynebacterium glutamicum
[TaxId: 1718]}
Length = 170
Score = 47.2 bits (111), Expect = 3e-07
Identities = 14/57 (24%), Positives = 27/57 (47%)
Query: 5 KKIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKH 61
I++ I G+G +GR V ++ ++ D++LV + + D T +F V
Sbjct: 2 TNIRVAIVGYGNLGRSVEKLIAKQPDMDLVGIFSRRATLDTKTPVFDVADVDKHADD 58
>d2czca1 d.81.1.1 (A:140-301) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii
[TaxId: 53953]}
Length = 162
Score = 46.8 bits (111), Expect = 4e-07
Identities = 23/144 (15%), Positives = 43/144 (29%), Gaps = 16/144 (11%)
Query: 156 SCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSS 215
SC T L I + V ++ D R I P+
Sbjct: 1 SCNTTGLVRTLSAIREYADYVY--------AVMIRRAAD-----PNDTKRGPINAIKPTV 47
Query: 216 TGAAKAVGKVLPALNGKLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKL 275
+ V + + M+F VPT + V + V L+K T +++ + + + L
Sbjct: 48 EVPSHHGPDVQTVIPINIETMAFVVPTTLMHVHSVMVELKKPLTKDDVIDIFENTTRVLL 107
Query: 276 KGI---LGYTEEDVVSTDFVGDSR 296
T + + +
Sbjct: 108 FEKEKGFDSTAQIIEFARDLHREW 131
>d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase
At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId:
3702]}
Length = 184
Score = 44.6 bits (104), Expect = 3e-06
Identities = 9/57 (15%), Positives = 18/57 (31%)
Query: 6 KIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHN 62
+I+IG+ G I R V+R + + V + + +
Sbjct: 1 QIRIGVMGCADIARKVSRAIHLAPNATISGVASRSLEKAKAFATANNYPESTKIHGS 57
>d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase
{Escherichia coli [TaxId: 562]}
Length = 162
Score = 43.3 bits (101), Expect = 5e-06
Identities = 25/131 (19%), Positives = 47/131 (35%), Gaps = 12/131 (9%)
Query: 4 DKKIKIGINGF-GRIGRLVARVALQRDDVELVAVND----PFISTDYMTYMFKYD-SVHG 57
D I++ I G GR+GR + + AL + V+L A + + +D V
Sbjct: 2 DANIRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGSDAGELAGAGKTGVTV 61
Query: 58 QWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHL 117
Q + +K + + F + + + + +V T F + K A
Sbjct: 62 QSSLDAVKDDFDVFIDFTRPEGT------LNHLAFCRQHGKGMVIGTTGFDEAGKQAIRD 115
Query: 118 KGGAKKVVISA 128
+V +A
Sbjct: 116 AAADIAIVFAA 126
>d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase
(acylating) {Pseudomonas sp. [TaxId: 306]}
Length = 157
Score = 40.8 bits (95), Expect = 4e-05
Identities = 27/171 (15%), Positives = 50/171 (29%), Gaps = 30/171 (17%)
Query: 5 KKIKIGINGFGRIGR-LVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNE 63
+K+K+ I G G IG L+ +V +E+ A+ I G
Sbjct: 3 QKLKVAIIGSGNIGTDLMIKVLRNAKYLEMGAMVG--IDAASDGLARAQR--MGVTTTYA 58
Query: 64 LKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKK 123
K F + + ++ G +
Sbjct: 59 GVEGLIKLPEFADIDFVFDATSASAHV-----------------QNEALLRQAKPG--IR 99
Query: 124 VVISAPSKDAPMFVVGVNEKE--YKPELDIVSNASCTT----NCLAPLAKV 168
++ P+ P V VN +E K +++V+ A LA ++
Sbjct: 100 LIDLTPAAIGPYCVPVVNLEEHLGKLNVNMVTYAGNLDIMTSAALATAERM 150
>d1lc0a1 c.2.1.3 (A:2-128,A:247-291) Biliverdin reductase {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 172
Score = 40.2 bits (93), Expect = 8e-05
Identities = 6/39 (15%), Positives = 12/39 (30%)
Query: 1 MAGDKKIKIGINGFGRIGRLVARVALQRDDVELVAVNDP 39
+ K + + G GR G + R + +
Sbjct: 2 ITNSGKFGVVVVGVGRAGSVRLRDLKDPRSAAFLNLIGF 40
>d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312
{Thermotoga maritima [TaxId: 2336]}
Length = 181
Score = 39.9 bits (92), Expect = 1e-04
Identities = 13/60 (21%), Positives = 20/60 (33%), Gaps = 2/60 (3%)
Query: 5 KKIKIGINGFGRIGRLVARVALQR--DDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHN 62
+KI++GI G G R + AL+ E+ AV S +
Sbjct: 2 RKIRLGIVGCGIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFAKMVGNPAVFDSYEE 61
>d2g17a1 c.2.1.3 (A:1-153,A:309-334)
N-acetyl-gamma-glutamyl-phosphate reductase ArgC
{Salmonella typhimurium [TaxId: 90371]}
Length = 179
Score = 39.6 bits (91), Expect = 1e-04
Identities = 17/175 (9%), Positives = 41/175 (23%), Gaps = 6/175 (3%)
Query: 7 IKIGING-FGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELK 65
+ I G G G + + + + A+ S D + L+
Sbjct: 2 LNTLIVGASGYAGAELVSYVNRHPHMTITALTVSAQSNDAGKLISDLHPQLKGIVDLPLQ 61
Query: 66 VKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVV 125
+ + V + A + + K
Sbjct: 62 PMSDVRDFSADVDVVFLATAHEVSHDLAPQFLQAGCVVFDLSGAFRVNDRAFYE--KYYG 119
Query: 126 ISAPSKDAPMFVVGVNEKEYKPELD---IVSNASCTTNCLAPLAKVIHDKFGIVE 177
+ + V + +L+ +++ A + + +FG E
Sbjct: 120 FTHQYPELLEQAVYGLAEWNVDKLNTANLIAVPGLLKGAAAQAVQCANIRFGFAE 174
>d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM
{Escherichia coli [TaxId: 562]}
Length = 164
Score = 38.8 bits (89), Expect = 2e-04
Identities = 10/58 (17%), Positives = 15/58 (25%), Gaps = 1/58 (1%)
Query: 6 KIKIGINGFGRIGRLVARVALQR-DDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHN 62
K++IG+ G G I + L D L P +
Sbjct: 1 KLRIGVVGLGGIAQKAWLPVLAAASDWTLQGAWSPTRAKALPICESWRIPYADSLSSL 58
>d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose
oxidoreductase, N-terminal domain {Zymomonas mobilis
[TaxId: 542]}
Length = 221
Score = 38.9 bits (89), Expect = 3e-04
Identities = 6/63 (9%), Positives = 15/63 (23%), Gaps = 1/63 (1%)
Query: 1 MAGDKKIKIGINGFGRIGRLVARVALQR-DDVELVAVNDPFISTDYMTYMFKYDSVHGQW 59
M D++ I G G+ + A+ + +
Sbjct: 28 MPEDRRFGYAIVGLGKYALNQILPGFAGCQHSRIEALVSGNAEKAKIVAAEYGVDPRKIY 87
Query: 60 KHN 62
++
Sbjct: 88 DYS 90
>d1vkna1 c.2.1.3 (A:1-144,A:308-339)
N-acetyl-gamma-glutamyl-phosphate reductase ArgC
{Thermotoga maritima [TaxId: 2336]}
Length = 176
Score = 38.3 bits (88), Expect = 4e-04
Identities = 21/174 (12%), Positives = 48/174 (27%), Gaps = 13/174 (7%)
Query: 7 IKIGING-FGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELK 65
I+ GI G G G + R+ + ++ ++ + + +F N +
Sbjct: 2 IRAGIIGATGYTGLELVRLLKNHPEAKITYLSSRTYAGKKLEEIFPS------TLENSIL 55
Query: 66 VKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVV 125
+ + + V + + G D + +
Sbjct: 56 SEFDPEKVSKNCDVLFTALPAGASYDLVRELKGVKIIDLGADFRFDDPGVYRE----WYG 111
Query: 126 ISAPSKDAPMFVVGVNE--KEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVE 177
+ V G+ E +E +V N + ++ FG+ E
Sbjct: 112 KELSGYENIKRVYGLPELHREEIKNAQVVGNPGLVKGASGQAVQNMNIMFGLDE 165
>d2nvwa1 c.2.1.3 (A:2-154,A:374-457) Galactose/lactose metabolism
regulatory protein GAL80 {Yeast (Kluyveromyces lactis)
[TaxId: 28985]}
Length = 237
Score = 36.1 bits (82), Expect = 0.003
Identities = 11/74 (14%), Positives = 26/74 (35%), Gaps = 12/74 (16%)
Query: 1 MAGDKKIKIGINGFGRIGRLVARVAL-----QRDDVELVAVNDP-------FISTDYMTY 48
+ + I++G G VA+ ++VA+ +P I + +
Sbjct: 11 VPSSRPIRVGFVGLTSGKSWVAKTHFLAIQQLSSQFQIVALYNPTLKSSLQTIEQLQLKH 70
Query: 49 MFKYDSVHGQWKHN 62
+DS+ ++
Sbjct: 71 ATGFDSLESFAQYK 84
>d2cvoa1 c.2.1.3 (A:68-218,A:384-415) Putative semialdehyde
dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]}
Length = 183
Score = 34.6 bits (78), Expect = 0.007
Identities = 16/184 (8%), Positives = 47/184 (25%), Gaps = 8/184 (4%)
Query: 5 KKIKIGING-FGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNE 63
++++I + G G G + R+ + + + + +F +
Sbjct: 4 EEVRIAVLGASGYTGAEIVRLLANHPQFRIKVMTADRKAGEQFGSVFPHLITQDLPNLVA 63
Query: 64 LKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVES-TGVFTDKDKAAAHLKGGAK 122
+K D + + K + + + +
Sbjct: 64 VKDADFSNV-----DAVFCCLPHGTTQEIIKGLPQELKIVDLSADFRLRDINEYAEWYGH 118
Query: 123 KVVISAPSKDAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTT 182
++A + V E + +V+N + ++ G+ E
Sbjct: 119 SHRAPELQQEAVYGLTEVLRNEIR-NARLVANPGLVKGASGQAVQNLNLMMGLPENTGLQ 177
Query: 183 VHSI 186
+
Sbjct: 178 YQPL 181
>d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 135
Score = 32.8 bits (74), Expect = 0.018
Identities = 9/30 (30%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 8 KIGINGF-GRIGRLVARVALQRDDVELVAV 36
++G+ G G++G + R DD+ L A
Sbjct: 1 RVGVLGAKGKVGATMVRAVAAADDLTLSAE 30
>d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase
VCA1048 {Vibrio cholerae [TaxId: 666]}
Length = 167
Score = 31.0 bits (69), Expect = 0.10
Identities = 11/33 (33%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Query: 7 IKIGINGFGRIG-RLVARVALQRDDVELVAVND 38
+KI + G G I + V Q D+ELV
Sbjct: 2 LKIAMIGLGDIAQKAYLPVLAQWPDIELVLCTR 34
>d2gz1a2 d.81.1.1 (A:128-329) Aspartate beta-semialdehyde
dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]}
Length = 202
Score = 29.8 bits (66), Expect = 0.27
Identities = 5/33 (15%), Positives = 17/33 (51%)
Query: 157 CTTNCLAPLAKVIHDKFGIVEGLMTTVHSITAT 189
C+T + + + K+G+ +++T +++
Sbjct: 1 CSTIQMMVALEPVRQKWGLDRIIVSTYQAVSGA 33
>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId:
1423]}
Length = 134
Score = 29.1 bits (64), Expect = 0.31
Identities = 7/54 (12%), Positives = 16/54 (29%), Gaps = 8/54 (14%)
Query: 8 KIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKH 61
+ + G GR G + + EL + ++ D + +
Sbjct: 2 QFAVIGLGRFGGSIVK--------ELHRMGHEVLAVDINEEKVNAYASYATHAV 47
>d1mb4a2 d.81.1.1 (A:133-354) Aspartate beta-semialdehyde
dehydrogenase {Vibrio cholerae [TaxId: 666]}
Length = 222
Score = 29.7 bits (66), Expect = 0.33
Identities = 3/33 (9%), Positives = 12/33 (36%)
Query: 157 CTTNCLAPLAKVIHDKFGIVEGLMTTVHSITAT 189
CT + + ++++ + T + +
Sbjct: 2 CTVSLMLMALGGLYERGLVEWMSAMTYQAASGA 34
>d1j5pa4 c.2.1.3 (A:-1-108,A:220-241) Hypothetical protein TM1643
{Thermotoga maritima [TaxId: 2336]}
Length = 132
Score = 28.5 bits (63), Expect = 0.48
Identities = 5/24 (20%), Positives = 10/24 (41%)
Query: 7 IKIGINGFGRIGRLVARVALQRDD 30
+ + I G G IG+ + +
Sbjct: 3 MTVLIIGMGNIGKKLVELGNFEKI 26
>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA
{Synechocystis sp. pcc 6803 [TaxId: 1148]}
Length = 165
Score = 29.0 bits (63), Expect = 0.51
Identities = 13/56 (23%), Positives = 21/56 (37%), Gaps = 1/56 (1%)
Query: 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHN 62
+KIG+ G G IG +A L+R L+ V+ + + D
Sbjct: 1 MKIGVVGLGLIGASLAG-DLRRRGHYLIGVSRQQSTCEKAVERQLVDEAGQDLSLL 55
>d2f6ua1 c.1.4.1 (A:1001-1231) (S)-3-O-geranylgeranylglyceryl
phosphate synthase {Archaeon Archaeoglobus fulgidus
[TaxId: 2234]}
Length = 231
Score = 28.9 bits (64), Expect = 0.60
Identities = 8/83 (9%), Positives = 21/83 (25%), Gaps = 5/83 (6%)
Query: 20 LVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPV 79
V + D + + ++ S +VK + +
Sbjct: 135 RVTKALCNIDKELAASYALVGEKLFNLPIIYIEYSGTYGNPELVAEVKKVLD----KARL 190
Query: 80 AV-FGFRNPEEIPWAKTGAEYVV 101
G + E+ A+ ++
Sbjct: 191 FYGGGIDSREKAREMLRYADTII 213
>d1t4ba2 d.81.1.1 (A:134-354) Aspartate beta-semialdehyde
dehydrogenase {Escherichia coli [TaxId: 562]}
Length = 221
Score = 28.6 bits (63), Expect = 0.81
Identities = 3/33 (9%), Positives = 10/33 (30%)
Query: 157 CTTNCLAPLAKVIHDKFGIVEGLMTTVHSITAT 189
CT + + + + + T + +
Sbjct: 2 CTVSLMLMSLGGLFANDLVDWVSVATYQAASGG 34
>d1qp8a2 c.23.12.1 (A:1-82,A:264-302) Putative formate dehydrogenase
{Archaeon Pyrobaculum aerophilum [TaxId: 13773]}
Length = 121
Score = 27.6 bits (61), Expect = 0.98
Identities = 3/18 (16%), Positives = 6/18 (33%)
Query: 8 KIGINGFGRIGRLVARVA 25
+ G R +A+
Sbjct: 100 NLITYATGGRPRNIAKRE 117
>d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex,
C-terminal domain {Thermus aquaticus [TaxId: 271]}
Length = 126
Score = 27.1 bits (60), Expect = 1.3
Identities = 10/37 (27%), Positives = 16/37 (43%)
Query: 4 DKKIKIGINGFGRIGRLVARVALQRDDVELVAVNDPF 40
++K + I G GR+G +A + EL D
Sbjct: 1 NRKWGLCIVGMGRLGSALADYPGFGESFELRGFFDVD 37
>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus
jannaschii [TaxId: 2190]}
Length = 132
Score = 27.2 bits (59), Expect = 1.4
Identities = 11/55 (20%), Positives = 18/55 (32%), Gaps = 4/55 (7%)
Query: 8 KIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHN 62
I I G GR+G +A+ +L + + + D I D
Sbjct: 2 YIIIAGIGRVGYTLAK-SLSEKGHD-IVLID--IDKDICKKASAEIDALVINGDC 52
>d1wgda_ d.15.1.1 (A:) Homocysteine-responsive endoplasmic
reticulum-resident ubiquitin-like domain member 1
protein, HERPUD1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 93
Score = 26.4 bits (58), Expect = 1.5
Identities = 5/37 (13%), Positives = 16/37 (43%)
Query: 234 TGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEE 270
+G++ V + + DL + ++ + +K +
Sbjct: 6 SGVTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRV 42
>d1ebfa1 c.2.1.3 (A:2-150,A:341-359) Homoserine dehydrogenase
{Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 168
Score = 27.3 bits (60), Expect = 1.6
Identities = 10/70 (14%), Positives = 17/70 (24%)
Query: 5 KKIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNEL 64
K + + + G G +G L + + + G L
Sbjct: 3 KVVNVAVIGAGVVGSAFLDQLLAMKSTITYNLVLLAEAERSLISKDFSPLNVGSDWKAAL 62
Query: 65 KVKDEKTLLF 74
KTL
Sbjct: 63 AASTTKTLPL 72
>d1gwja_ c.1.4.1 (A:) Morphinone reductase {Pseudomonas putida
[TaxId: 303]}
Length = 374
Score = 27.2 bits (59), Expect = 2.4
Identities = 10/38 (26%), Positives = 17/38 (44%)
Query: 5 KKIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFIS 42
++ K G+ G A+ L + + VA PFI+
Sbjct: 293 QRFKGGLIYCGNYDAGRAQARLDDNTADAVAFGRPFIA 330
>d1f5va_ d.90.1.1 (A:) Oxygen-insensitive NAD(P)H nitroreductase
{Escherichia coli, major form, NfsA [TaxId: 562]}
Length = 240
Score = 26.7 bits (58), Expect = 3.3
Identities = 15/85 (17%), Positives = 25/85 (29%), Gaps = 4/85 (4%)
Query: 14 FGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYM---FKYDSVH-GQWKHNELKVKDE 69
F R ++ L + L+ V D + V+ G ++N V
Sbjct: 83 FNRHLQICPDAQLGLAEQLLLGVVDTAMMAQNALIAAESLGLGGVYIGGLRNNIEAVTKL 142
Query: 70 KTLLFGEKPVAVFGFRNPEEIPWAK 94
L P+ P + P K
Sbjct: 143 LKLPQHVLPLFGLCLGWPADNPDLK 167
>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747
{Archaeon Methanobacterium thermoautotrophicum [TaxId:
145262]}
Length = 152
Score = 26.4 bits (57), Expect = 3.5
Identities = 19/148 (12%), Positives = 43/148 (29%), Gaps = 20/148 (13%)
Query: 8 KIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVK 67
++G GFG + + +A L+ VE+V + + G + +E V
Sbjct: 2 RVGFIGFGEVAQTLAS-RLRSRGVEVVTSLEGRSPSTIERART-----VGVTETSEEDVY 55
Query: 68 DEK---TLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKG-GAKK 123
+ + + YV + A++ ++ G
Sbjct: 56 SCPVVISAVTPGVALGAARRAGRHVRGI------YVDINNISPETVRMASSLIEKGGFVD 109
Query: 124 VVISAPSKDA----PMFVVGVNEKEYKP 147
I + + G + +E+
Sbjct: 110 AAIMGSVRRKGADIRIIASGRDAEEFMK 137
>d2hgsa1 c.30.1.4 (A:202-303) Eukaryotic glutathione synthetase,
substrate-binding domain {Human (Homo sapiens) [TaxId:
9606]}
Length = 102
Score = 25.4 bits (56), Expect = 3.6
Identities = 5/25 (20%), Positives = 11/25 (44%)
Query: 61 HNELKVKDEKTLLFGEKPVAVFGFR 85
+ + ++ L + +AV FR
Sbjct: 42 SEKGSLDQDRRLFVDGQEIAVVYFR 66
>d1wgya_ d.15.1.5 (A:) Rap guanine nucleotide exchange factor 5,
RapGEF5 {Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 25.1 bits (55), Expect = 5.4
Identities = 11/50 (22%), Positives = 21/50 (42%), Gaps = 10/50 (20%)
Query: 238 FRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVV 287
V + S V +V+ + + +EI + E+ + Y EED+
Sbjct: 12 CHVYITEHSYV--SVKAKVSSIAQEILKVVAEK--------IQYAEEDLA 51
>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein
MthK {Archaeon Methanothermobacter thermautotrophicus
[TaxId: 145262]}
Length = 129
Score = 25.2 bits (54), Expect = 5.6
Identities = 6/31 (19%), Positives = 13/31 (41%), Gaps = 1/31 (3%)
Query: 11 INGFGRIGRLVARVALQRDDVELVAVNDPFI 41
I G+ R L+ +V ++A ++
Sbjct: 5 ICGWSESTLECLR-ELRGSEVFVLAEDENVR 34
>d1q6oa_ c.1.2.3 (A:) 3-keto-L-gulonate 6-phosphate decarboxylase
{Escherichia coli [TaxId: 562]}
Length = 213
Score = 25.9 bits (56), Expect = 5.9
Identities = 11/73 (15%), Positives = 18/73 (24%), Gaps = 1/73 (1%)
Query: 44 DYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWA-KTGAEYVVE 102
+ Y D+ E + K L V V G E++P +
Sbjct: 129 GQVVYHRSRDAQAAGVAWGEADITAIKRLSDMGFKVTVTGGLALEDLPLFKGIPIHVFIA 188
Query: 103 STGVFTDKDKAAA 115
+ A
Sbjct: 189 GRSIRDAASPVEA 201
>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC
{Neisseria meningitidis, serogroup B [TaxId: 487]}
Length = 152
Score = 25.7 bits (55), Expect = 5.9
Identities = 5/55 (9%), Positives = 17/55 (30%)
Query: 8 KIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHN 62
+ G G + VA +++ + N + + ++ + +
Sbjct: 2 NVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGAEKRERLEKELGVETSATLPELH 56
>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha
subunit, middle domain {Pseudomonas fragi [TaxId: 296]}
Length = 186
Score = 25.6 bits (55), Expect = 6.8
Identities = 9/72 (12%), Positives = 24/72 (33%), Gaps = 2/72 (2%)
Query: 5 KKIK-IGINGFGRIGRLVARVALQRD-DVELVAVNDPFISTDYMTYMFKYDSVHGQWKHN 62
K +K + G G +G +A + + + + +N+ I + +
Sbjct: 2 KDVKQAAVLGAGIMGGGIAYQSASKGTPILMKDINEHGIEQGLAEAAKLLVGRVDKGRMT 61
Query: 63 ELKVKDEKTLLF 74
K+ + +
Sbjct: 62 PAKMAEVLNGIR 73
>d1j3aa_ c.21.1.1 (A:) Ribosomal protein L13 {Archaeon Pyrococcus
horikoshii [TaxId: 53953]}
Length = 142
Score = 25.0 bits (54), Expect = 7.9
Identities = 11/55 (20%), Positives = 21/55 (38%)
Query: 14 FGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKD 68
GR+ VA++ L+ ++V +V I+ + KY G +
Sbjct: 11 LGRLASRVAKMLLEGEEVVIVNAEKAVITGNREVIFSKYKQRTGLRTLTNPRRGP 65
>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel
Kch {Escherichia coli [TaxId: 562]}
Length = 153
Score = 25.2 bits (54), Expect = 8.1
Identities = 3/35 (8%), Positives = 11/35 (31%), Gaps = 1/35 (2%)
Query: 5 KKIKIGINGFGRIGRLVARVALQRDDVELVAVNDP 39
+K + G + L + + +++
Sbjct: 2 RKDHFIVCGHSILAINTIL-QLNQRGQNVTVISNL 35
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.315 0.133 0.382
Gapped
Lambda K H
0.267 0.0613 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,094,991
Number of extensions: 50664
Number of successful extensions: 264
Number of sequences better than 10.0: 1
Number of HSP's gapped: 204
Number of HSP's successfully gapped: 69
Length of query: 296
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 211
Effective length of database: 1,240,546
Effective search space: 261755206
Effective search space used: 261755206
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 53 (24.4 bits)