BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022492
(296 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2UWC|A Chain A, Crystal Structure Of Nasturtium Xyloglucan Hydrolase
Isoform Nxg2
pdb|2UWC|B Chain B, Crystal Structure Of Nasturtium Xyloglucan Hydrolase
Isoform Nxg2
Length = 271
Score = 425 bits (1093), Expect = e-119, Method: Compositional matrix adjust.
Identities = 194/261 (74%), Positives = 224/261 (85%), Gaps = 2/261 (0%)
Query: 36 RINSIGFDQAFRNLWGPQHQRVDQGTLTVWLDXXXXXXFKSLHSYRSGYFGASIKLQPGY 95
+I S+GFDQ + NLWGPQHQRVDQG+LT+WLD FKS++ YRSGYFGA+IKLQ GY
Sbjct: 13 QITSLGFDQGYTNLWGPQHQRVDQGSLTIWLDSTSGSGFKSINRYRSGYFGANIKLQSGY 72
Query: 96 TAGVITSLYLSNNQDHPGNHDEVDIEFLGTIPGKPYTLQTNVYIRGSGDGRLIGRELRFH 155
TAGVITS YLSNNQD+PG HDE+DIEFLGTIPGKPYTLQTNV+I GSGD +IGRELR H
Sbjct: 73 TAGVITSFYLSNNQDYPGKHDEIDIEFLGTIPGKPYTLQTNVFIEGSGDYNIIGRELRIH 132
Query: 156 LWFDPTQDFHHYAVLWSPSELIFFVDDVPIRRYPRKSDATFPLRPMYLYGSIWDASSWAT 215
LWFDPTQD+H+YA+ W+PSE+IFFVDDVPIRRYPRKSDATFPLRPM++YGS+WDASSWAT
Sbjct: 133 LWFDPTQDYHNYAIYWTPSEIIFFVDDVPIRRYPRKSDATFPLRPMWVYGSVWDASSWAT 192
Query: 216 EEGRYKADYKYQPFVGQYRNFKIAGCTADGPSGCHPPPASPSGSGVLSQQQVAAMQWVQR 275
E G+YKADY+YQPFVG+Y +FK+ CT + S C+P SP G LSQQQVAAM+WVQ+
Sbjct: 193 ENGKYKADYRYQPFVGKYEDFKLGSCTVEAASSCNPASVSPYGQ--LSQQQVAAMEWVQK 250
Query: 276 NYLVYNYCYDPKRDHTEIPEC 296
NY+VYNYC DP RDHT PEC
Sbjct: 251 NYMVYNYCDDPTRDHTLTPEC 271
>pdb|2UWA|A Chain A, Crystal Structure Of The Nasturtium Seedling Xyloglucanase
Isoform Nxg1
pdb|2UWA|B Chain B, Crystal Structure Of The Nasturtium Seedling Xyloglucanase
Isoform Nxg1
pdb|2UWA|C Chain C, Crystal Structure Of The Nasturtium Seedling Xyloglucanase
Isoform Nxg1
Length = 274
Score = 423 bits (1088), Expect = e-119, Method: Compositional matrix adjust.
Identities = 192/261 (73%), Positives = 224/261 (85%), Gaps = 2/261 (0%)
Query: 36 RINSIGFDQAFRNLWGPQHQRVDQGTLTVWLDXXXXXXFKSLHSYRSGYFGASIKLQPGY 95
+I S+GFDQ + NLWGPQHQRVDQG+LT+WLD FKS++ YRSGYFGA+IKLQ GY
Sbjct: 16 QITSLGFDQGYTNLWGPQHQRVDQGSLTIWLDSTSGSGFKSINRYRSGYFGANIKLQSGY 75
Query: 96 TAGVITSLYLSNNQDHPGNHDEVDIEFLGTIPGKPYTLQTNVYIRGSGDGRLIGRELRFH 155
TAGVITS YLSNNQD+PG HDE+DIEFLGTIPGKPYTLQTNV+I GSGD +IGRE+R H
Sbjct: 76 TAGVITSFYLSNNQDYPGKHDEIDIEFLGTIPGKPYTLQTNVFIEGSGDYNIIGREMRIH 135
Query: 156 LWFDPTQDFHHYAVLWSPSELIFFVDDVPIRRYPRKSDATFPLRPMYLYGSIWDASSWAT 215
LWFDPTQD+H+YA+ W+PSE+IFFVDDVPIRRYPRKSDATFPLRP+++YGS+WDASSWAT
Sbjct: 136 LWFDPTQDYHNYAIYWTPSEIIFFVDDVPIRRYPRKSDATFPLRPLWVYGSVWDASSWAT 195
Query: 216 EEGRYKADYKYQPFVGQYRNFKIAGCTADGPSGCHPPPASPSGSGVLSQQQVAAMQWVQR 275
E G+YKADY+YQPFVG+Y +FK+ CT + S C+P SP G LSQQQVAAM+WVQ+
Sbjct: 196 ENGKYKADYRYQPFVGKYEDFKLGSCTVEAASSCNPASVSPYGQ--LSQQQVAAMEWVQK 253
Query: 276 NYLVYNYCYDPKRDHTEIPEC 296
NY+VYNYC DP RDHT PEC
Sbjct: 254 NYMVYNYCDDPTRDHTLTPEC 274
>pdb|2VH9|A Chain A, Crystal Structure Of Nxg1-Deltayniig In Complex With Xllg,
A Xyloglucan Derived Oligosaccharide
pdb|2VH9|B Chain B, Crystal Structure Of Nxg1-Deltayniig In Complex With Xllg,
A Xyloglucan Derived Oligosaccharide
Length = 290
Score = 414 bits (1063), Expect = e-116, Method: Compositional matrix adjust.
Identities = 194/282 (68%), Positives = 226/282 (80%), Gaps = 7/282 (2%)
Query: 15 MTISSVSNGQXXXXXXXXXXXRINSIGFDQAFRNLWGPQHQRVDQGTLTVWLDXXXXXXF 74
+ SS GQ +I S+GFDQ + NLWGPQHQRVDQG+LT+WLD F
Sbjct: 16 LMFSSSCLGQGPPSPGYYPSSQITSLGFDQGYTNLWGPQHQRVDQGSLTIWLDSTSGSGF 75
Query: 75 KSLHSYRSGYFGASIKLQPGYTAGVITSLYLSNNQDHPGNHDEVDIEFLGTIPGKPYTLQ 134
KS++ YRSGYFGA+IKLQ GYTAGVITS YLSNNQD+PG HDE+DIEFLGTIPGKPYTLQ
Sbjct: 76 KSINRYRSGYFGANIKLQSGYTAGVITSFYLSNNQDYPGKHDEIDIEFLGTIPGKPYTLQ 135
Query: 135 TNVYIRGSGDGRLIGRELRFHLWFDPTQDFHHYAVLWSPSELIFFVDDVPIRRYPRKSDA 194
TNV+I GSGD RE+R HLWFDPTQD+H+YA+ W+PSE+IFFVDDVPIRRYPRKSDA
Sbjct: 136 TNVFIEGSGD-----REMRIHLWFDPTQDYHNYAIYWTPSEIIFFVDDVPIRRYPRKSDA 190
Query: 195 TFPLRPMYLYGSIWDASSWATEEGRYKADYKYQPFVGQYRNFKIAGCTADGPSGCHPPPA 254
TFPLRP+++YGS+WDASSWATE G+YKADY+YQPFVG+Y +FK+ CT + S C+P
Sbjct: 191 TFPLRPLWVYGSVWDASSWATENGKYKADYRYQPFVGKYEDFKLGSCTVEAASSCNPASV 250
Query: 255 SPSGSGVLSQQQVAAMQWVQRNYLVYNYCYDPKRDHTEIPEC 296
SP G LSQQQVAAM+WVQ+NY+VYNYC DP RDHT PEC
Sbjct: 251 SPYGQ--LSQQQVAAMEWVQKNYMVYNYCDDPTRDHTLTPEC 290
>pdb|2UWB|A Chain A, Crystal Structure Of The Nasturtium Seedling Mutant
Xyloglucanase Isoform Nxg1-Delta-Yniig
pdb|2UWB|B Chain B, Crystal Structure Of The Nasturtium Seedling Mutant
Xyloglucanase Isoform Nxg1-Delta-Yniig
Length = 267
Score = 413 bits (1061), Expect = e-116, Method: Compositional matrix adjust.
Identities = 190/261 (72%), Positives = 221/261 (84%), Gaps = 7/261 (2%)
Query: 36 RINSIGFDQAFRNLWGPQHQRVDQGTLTVWLDXXXXXXFKSLHSYRSGYFGASIKLQPGY 95
+I S+GFDQ + NLWGPQHQRVDQG+LT+WLD FKS++ YRSGYFGA+IKLQ GY
Sbjct: 14 QITSLGFDQGYTNLWGPQHQRVDQGSLTIWLDSTSGSGFKSINRYRSGYFGANIKLQSGY 73
Query: 96 TAGVITSLYLSNNQDHPGNHDEVDIEFLGTIPGKPYTLQTNVYIRGSGDGRLIGRELRFH 155
TAGVITS YLSNNQD+PG HDE+DIEFLGTIPGKPYTLQTNV+I GSGD RE+R H
Sbjct: 74 TAGVITSFYLSNNQDYPGKHDEIDIEFLGTIPGKPYTLQTNVFIEGSGD-----REMRIH 128
Query: 156 LWFDPTQDFHHYAVLWSPSELIFFVDDVPIRRYPRKSDATFPLRPMYLYGSIWDASSWAT 215
LWFDPTQD+H+YA+ W+PSE+IFFVDDVPIRRYPRKSDATFPLRP+++YGS+WDASSWAT
Sbjct: 129 LWFDPTQDYHNYAIYWTPSEIIFFVDDVPIRRYPRKSDATFPLRPLWVYGSVWDASSWAT 188
Query: 216 EEGRYKADYKYQPFVGQYRNFKIAGCTADGPSGCHPPPASPSGSGVLSQQQVAAMQWVQR 275
E G+YKADY+YQPFVG+Y +FK+ CT + S C+P SP G LSQQQVAAM+WVQ+
Sbjct: 189 ENGKYKADYRYQPFVGKYEDFKLGSCTVEAASSCNPASVSPYGQ--LSQQQVAAMEWVQK 246
Query: 276 NYLVYNYCYDPKRDHTEIPEC 296
NY+VYNYC DP RDHT PEC
Sbjct: 247 NYMVYNYCDDPTRDHTLTPEC 267
>pdb|1UMZ|A Chain A, Xyloglucan Endotransglycosylase In Complex With The
Xyloglucan Nonasaccharide Xllg.
pdb|1UMZ|B Chain B, Xyloglucan Endotransglycosylase In Complex With The
Xyloglucan Nonasaccharide Xllg.
pdb|1UN1|A Chain A, Xyloglucan Endotransglycosylase Native Structure.
pdb|1UN1|B Chain B, Xyloglucan Endotransglycosylase Native Structure
Length = 278
Score = 180 bits (457), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 104/266 (39%), Positives = 142/266 (53%), Gaps = 17/266 (6%)
Query: 40 IGFDQAFRNLWGPQHQRVDQG--TLTVWLDXXXXXXFKSLHSYRSGYFGASIKLQPGYTA 97
+ F + + W H + G + + LD F+S SY G+F +KL PG +A
Sbjct: 15 VAFGRNYVPTWAFDHIKYFNGGNEIQLHLDKYTGTGFQSKGSYLFGHFSMQMKLVPGDSA 74
Query: 98 GVITSLYLSNNQDHPGNHDEVDIEFLGTIPGKPYTLQTNVYIRGSGDGRLIGRELRFHLW 157
G +T+ YLS+ HDE+D EFLG G+PY LQTNV+ G GD RE R +LW
Sbjct: 75 GTVTAFYLSSQN---SEHDEIDFEFLGNRTGQPYILQTNVFTGGKGD-----REQRIYLW 126
Query: 158 FDPTQDFHHYAVLWSPSELIFFVDDVPIRRYPRKSD--ATFPL-RPMYLYGSIWDASSWA 214
FDPT++FH+Y+VLW+ ++F VDDVPIR + D FP +PM +Y S+W+A WA
Sbjct: 127 FDPTKEFHYYSVLWNMYMIVFLVDDVPIRVFKNCKDLGVKFPFNQPMKIYSSLWNADDWA 186
Query: 215 TEEGRYKADYKYQPFVGQYRNFKIAGCTADGPSG-CHPPPA---SPSGSGVLSQQQVAAM 270
T G K D+ PF+ YR+F I GC A + C A L Q +
Sbjct: 187 TRGGLEKTDWSKAPFIASYRSFHIDGCEASVEAKFCATQGARWWDQKEFQDLDAFQYRRL 246
Query: 271 QWVQRNYLVYNYCYDPKRDHTEIPEC 296
WV++ Y +YNYC D R + PEC
Sbjct: 247 SWVRQKYTIYNYCTDRSRYPSMPPEC 272
>pdb|1AXK|A Chain A, Engineered Bacillus Bifunctional Enzyme Gluxyn-1
pdb|1AXK|B Chain B, Engineered Bacillus Bifunctional Enzyme Gluxyn-1
Length = 394
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 63/138 (45%), Gaps = 14/138 (10%)
Query: 74 FKSLHSYRSGYFGASIKLQPGYTAGVITSLYLSNNQDHPGNHDEVDIEFLGTIPGKPYTL 133
++S + Y G + + ++P G+++S + H DE+DIEFLG K +
Sbjct: 6 YRSTNIYGYGLY--EVSMKPAKNTGIVSSFFTYTGPAHGTQWDEIDIEFLGKDTTK---V 60
Query: 134 QTNVYIRGSGDGRLIGRELRFHLWFDPTQDFHHYAVLWSPSELIFFVDDVPIRRYPRKSD 193
Q N Y G G G E L FD ++ FH YA W P + ++VD V +
Sbjct: 61 QFNYYTNGVG-----GHEKVISLGFDASKGFHTYAFDWQPGYIKWYVDGV----LKHTAT 111
Query: 194 ATFPLRPMYLYGSIWDAS 211
A P P + ++W+ +
Sbjct: 112 ANIPSTPGKIMMNLWNGT 129
>pdb|1CPM|A Chain A, Native-Like In Vivo Folding Of A Circularly Permuted
Jellyroll Protein Shown By Crystal Structure Analysis
Length = 214
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 61/136 (44%), Gaps = 16/136 (11%)
Query: 80 YRS----GYFGASIKLQPGYTAGVITSLYLSNNQDHPGNHDEVDIEFLGTIPGKPYTLQT 135
YRS GY + ++P G+++S + H DE+DIEFLG K +Q
Sbjct: 6 YRSTNIYGYGLYEVSMKPAKNTGIVSSFFTYTGPAHGTQWDEIDIEFLGKDTTK---VQF 62
Query: 136 NVYIRGSGDGRLIGRELRFHLWFDPTQDFHHYAVLWSPSELIFFVDDVPIRRYPRKSDAT 195
N Y G G G E L FD ++ FH YA W P + ++VD V + A
Sbjct: 63 NYYTNGVG-----GHEKVISLGFDASKGFHTYAFDWQPGYIKWYVDGV----LKHTATAN 113
Query: 196 FPLRPMYLYGSIWDAS 211
P P + ++W+ +
Sbjct: 114 IPSTPGKIMMNLWNGT 129
>pdb|1CPN|A Chain A, Native-Like In Vivo Folding Of A Circularly Permuted
Jellyroll Protein Shown By Crystal Structure Analysis
Length = 208
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 61/136 (44%), Gaps = 16/136 (11%)
Query: 80 YRS----GYFGASIKLQPGYTAGVITSLYLSNNQDHPGNHDEVDIEFLGTIPGKPYTLQT 135
YRS GY + ++P G+++S + H DE+DIEFLG K +Q
Sbjct: 6 YRSTNIYGYGLYEVSMKPAKNTGIVSSFFTYTGPAHGTQWDEIDIEFLGKDTTK---VQF 62
Query: 136 NVYIRGSGDGRLIGRELRFHLWFDPTQDFHHYAVLWSPSELIFFVDDVPIRRYPRKSDAT 195
N Y G G G E L FD ++ FH YA W P + ++VD V + A
Sbjct: 63 NYYTNGVG-----GHEKVISLGFDASKGFHTYAFDWQPGYIKWYVDGV----LKHTATAN 113
Query: 196 FPLRPMYLYGSIWDAS 211
P P + ++W+ +
Sbjct: 114 IPSTPGKIMMNLWNGT 129
>pdb|1BYH|A Chain A, Molecular And Active-Site Structure Of A Bacillus
(1-3,1-4)- Beta-Glucanase
pdb|1GLH|A Chain A, Cation Binding To A Bacillus (1,3-1,4)-Beta-Glucanase.
Geometry, Affinity And Effect On Protein Stability
pdb|2AYH|A Chain A, Crystal And Molecular Structure At 1.6 Angstroms
Resolution Of The Hybrid Bacillus
Endo-1,3-1,4-Beta-D-Glucan 4- Glucanohydrolase H(A16-M)
Length = 214
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 61/136 (44%), Gaps = 16/136 (11%)
Query: 80 YRS----GYFGASIKLQPGYTAGVITSLYLSNNQDHPGNHDEVDIEFLGTIPGKPYTLQT 135
YRS GY + ++P G+++S + H DE+DIEFLG K +Q
Sbjct: 64 YRSTNIYGYGLYEVSMKPAKNTGIVSSFFTYTGPAHGTQWDEIDIEFLGKDTTK---VQF 120
Query: 136 NVYIRGSGDGRLIGRELRFHLWFDPTQDFHHYAVLWSPSELIFFVDDVPIRRYPRKSDAT 195
N Y G G G E L FD ++ FH YA W P + ++VD V + A
Sbjct: 121 NYYTNGVG-----GHEKVISLGFDASKGFHTYAFDWQPGYIKWYVDGV----LKHTATAN 171
Query: 196 FPLRPMYLYGSIWDAS 211
P P + ++W+ +
Sbjct: 172 IPSTPGKIMMNLWNGT 187
>pdb|1MAC|A Chain A, Crystal Structure And Site-Directed Mutagenesis Of
Bacillus Macerans Endo-1,3-1,4-Beta-Glucanase
pdb|1MAC|B Chain B, Crystal Structure And Site-Directed Mutagenesis Of
Bacillus Macerans Endo-1,3-1,4-Beta-Glucanase
Length = 212
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 61/136 (44%), Gaps = 16/136 (11%)
Query: 80 YRS----GYFGASIKLQPGYTAGVITSLYLSNNQDHPGNHDEVDIEFLGTIPGKPYTLQT 135
YRS GY + ++P G+++S + H DE+DIEFLG K +Q
Sbjct: 62 YRSTNIYGYGLYEVSMKPAKNTGIVSSFFTYTGPAHGTQWDEIDIEFLGKDTTK---VQF 118
Query: 136 NVYIRGSGDGRLIGRELRFHLWFDPTQDFHHYAVLWSPSELIFFVDDVPIRRYPRKSDAT 195
N Y G G G E L FD ++ FH YA W P + ++VD V + A
Sbjct: 119 NYYTNGVG-----GHEKVISLGFDASKGFHTYAFDWQPGYIKWYVDGV----LKHTATAN 169
Query: 196 FPLRPMYLYGSIWDAS 211
P P + ++W+ +
Sbjct: 170 IPSTPGKIMMNLWNGT 185
>pdb|1U0A|A Chain A, Crystal Structure Of The Engineered
Beta-1,3-1,4-Endoglucanase H(A16- M) In Complex With
Beta-Glucan Tetrasaccharide
pdb|1U0A|B Chain B, Crystal Structure Of The Engineered
Beta-1,3-1,4-Endoglucanase H(A16- M) In Complex With
Beta-Glucan Tetrasaccharide
pdb|1U0A|C Chain C, Crystal Structure Of The Engineered
Beta-1,3-1,4-Endoglucanase H(A16- M) In Complex With
Beta-Glucan Tetrasaccharide
pdb|1U0A|D Chain D, Crystal Structure Of The Engineered
Beta-1,3-1,4-Endoglucanase H(A16- M) In Complex With
Beta-Glucan Tetrasaccharide
Length = 214
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 61/136 (44%), Gaps = 16/136 (11%)
Query: 80 YRS----GYFGASIKLQPGYTAGVITSLYLSNNQDHPGNHDEVDIEFLGTIPGKPYTLQT 135
YRS GY + ++P G+++S + H D++DI+FLG K +Q
Sbjct: 64 YRSTNIYGYGLYEVSMKPAKNTGIVSSFFTYTGPAHGTQWDQIDIQFLGKDTTK---VQF 120
Query: 136 NVYIRGSGDGRLIGRELRFHLWFDPTQDFHHYAVLWSPSELIFFVDDVPIRRYPRKSDAT 195
N Y G G G E L FD ++ FH YA W P + ++VD V + A
Sbjct: 121 NYYTNGVG-----GHEKVISLGFDASKGFHTYAFDWQPGYIKWYVDGV----LKHTATAN 171
Query: 196 FPLRPMYLYGSIWDAS 211
P P + ++W+ +
Sbjct: 172 IPSTPGKIMMNLWNGT 187
>pdb|3I4I|A Chain A, Crystal Structure Of A Prokaryotic Beta-1,3-1,4-Glucanase
(Lichenase) Derived From A Mouse Hindgut Metagenome
pdb|3I4I|B Chain B, Crystal Structure Of A Prokaryotic Beta-1,3-1,4-Glucanase
(Lichenase) Derived From A Mouse Hindgut Metagenome
Length = 234
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 61/128 (47%), Gaps = 12/128 (9%)
Query: 81 RSGYFGASIKLQPGYTAGVITSLYLSNNQDHPGNHDEVDIEFLGTIPGKPYTLQTNVYIR 140
+ GY ++++P G+++S + H DE+DIEFLG K +Q N Y
Sbjct: 89 KFGYGLYQVRMKPAKNPGIVSSFFTYTGPVHGTPWDEIDIEFLGKDTTK---VQFNYYTN 145
Query: 141 GSGDGRLIGRELRFHLWFDPTQDFHHYAVLWSPSELIFFVDDVPIRRYPRKSDATFPLRP 200
+G+ E + L FD ++DFH YA W P+ + + VD + R + P+ P
Sbjct: 146 SAGN-----HEYIYDLRFDASEDFHIYAFNWQPNYIAWLVDGEEVYR----AYDDIPVHP 196
Query: 201 MYLYGSIW 208
+ +IW
Sbjct: 197 GKIMLNIW 204
>pdb|3D6E|A Chain A, Crystal Structure Of The Engineered 1,3-1,4-Beta-Glucanase
Protein From Bacillus Licheniformis
pdb|3D6E|B Chain B, Crystal Structure Of The Engineered 1,3-1,4-Beta-Glucanase
Protein From Bacillus Licheniformis
Length = 201
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 62/137 (45%), Gaps = 14/137 (10%)
Query: 75 KSLHSYRSGYFGASIKLQPGYTAGVITSLYLSNNQDHPGNHDEVDIEFLGTIPGKPYTLQ 134
+S+ +Y G + + ++P G++++ Y S DE+DIEFLG K +Q
Sbjct: 52 QSVQTYGYGLY--EVNMKPAKNVGIVSAFYTSTGPTDGTPWDEIDIEFLGKDTTK---VQ 106
Query: 135 TNVYIRGSGDGRLIGRELRFHLWFDPTQDFHHYAVLWSPSELIFFVDDVPIRRYPRKSDA 194
N Y G G+ E +L FD +H YA W P+ + ++VD + +
Sbjct: 107 FNYYTNGVGN-----HEKIVNLGFDAANSYHTYAFDWQPNSIKWYVDG----QLKHTATT 157
Query: 195 TFPLRPMYLYGSIWDAS 211
P P +Y S+W +
Sbjct: 158 QIPQTPGKIYMSLWAGA 174
>pdb|1AJK|A Chain A, Circularly Permuted (1-3,1-4)-Beta-D-Glucan 4-
Glucanohydrolase Cpa16m-84
pdb|1AJK|B Chain B, Circularly Permuted (1-3,1-4)-Beta-D-Glucan 4-
Glucanohydrolase Cpa16m-84
Length = 214
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 52/115 (45%), Gaps = 12/115 (10%)
Query: 97 AGVITSLYLSNNQDHPGNHDEVDIEFLGTIPGKPYTLQTNVYIRGSGDGRLIGRELRFHL 156
G+++S + H DE+DIEFLG K +Q N Y G G G E L
Sbjct: 2 TGIVSSFFTYTGPAHGTQWDEIDIEFLGKDTTK---VQFNYYTNGVG-----GHEKVISL 53
Query: 157 WFDPTQDFHHYAVLWSPSELIFFVDDVPIRRYPRKSDATFPLRPMYLYGSIWDAS 211
FD ++ FH YA W P + ++VD V + A P P + ++W+ +
Sbjct: 54 GFDASKGFHTYAFDWQPGYIKWYVDGV----LKHTATANIPSTPGKIMMNLWNGT 104
>pdb|3O5S|A Chain A, Crystal Structure Of The Endo-Beta-1,3-1,4 Glucanase From
Bacillus Subtilis (Strain 168)
Length = 238
Score = 51.6 bits (122), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 62/137 (45%), Gaps = 14/137 (10%)
Query: 75 KSLHSYRSGYFGASIKLQPGYTAGVITSLYLSNNQDHPGNHDEVDIEFLGTIPGKPYTLQ 134
+S+ +Y G + ++++P G+++S + DE+DIEFLG K +Q
Sbjct: 89 RSVQTYGYGLY--EVRMKPAKNTGIVSSFFTYTGPTDGTPWDEIDIEFLGKDTTK---VQ 143
Query: 135 TNVYIRGSGDGRLIGRELRFHLWFDPTQDFHHYAVLWSPSELIFFVDDVPIRRYPRKSDA 194
N Y G+G+ E L FD +H YA W P+ + ++VD + +
Sbjct: 144 FNYYTNGAGN-----HEKIVDLGFDAANAYHTYAFDWQPNSIKWYVDG----QLKHTATN 194
Query: 195 TFPLRPMYLYGSIWDAS 211
P P + ++W+ +
Sbjct: 195 QIPTTPGKIMMNLWNGT 211
>pdb|1GBG|A Chain A, Bacillus Licheniformis Beta-Glucanase
Length = 214
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 61/137 (44%), Gaps = 14/137 (10%)
Query: 75 KSLHSYRSGYFGASIKLQPGYTAGVITSLYLSNNQDHPGNHDEVDIEFLGTIPGKPYTLQ 134
+S+ +Y G + + ++P G+++S + DE+DIEFLG K +Q
Sbjct: 65 RSVQTYGYGLY--EVNMKPAKNVGIVSSFFTYTGPTDGTPWDEIDIEFLGKDTTK---VQ 119
Query: 135 TNVYIRGSGDGRLIGRELRFHLWFDPTQDFHHYAVLWSPSELIFFVDDVPIRRYPRKSDA 194
N Y G G+ E +L FD +H YA W P+ + ++VD + +
Sbjct: 120 FNYYTNGVGN-----HEKIVNLGFDAANSYHTYAFDWQPNSIKWYVDG----QLKHTATT 170
Query: 195 TFPLRPMYLYGSIWDAS 211
P P + ++W+ +
Sbjct: 171 QIPQTPGKIMMNLWNGA 187
>pdb|3AXD|A Chain A, The Truncated Fibrobacter Succinogenes
1,3-1,4-Beta-D-Glucanase V18yW203Y IN APO-Form
pdb|3AXD|B Chain B, The Truncated Fibrobacter Succinogenes
1,3-1,4-Beta-D-Glucanase V18yW203Y IN APO-Form
pdb|3AXE|A Chain A, The Truncated Fibrobacter Succinogenes
1,3-1,4-Beta-D-Glucanase V18yW203Y IN COMPLEX WITH
CELLOTETRAOSE (CELLOBIOSE DENSITY WAS Observed)
Length = 249
Score = 44.7 bits (104), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 56/117 (47%), Gaps = 14/117 (11%)
Query: 76 SLHSYRSGYFGASIKLQPGYTAGVITSLYLSNNQDHPGNHD---EVDIEFLGTIPGKPYT 132
+L Y+ G F A +K+ +G ++S++L N + EVDIE LG PG +
Sbjct: 14 TLEEYQYGKFEARMKMAA--ASGTVSSMFLYQNGSEIADGRPWVEVDIEVLGKSPG---S 68
Query: 133 LQTNVYIRGSGDGRLIGRELRFHLWFDPTQD--FHHYAVLWSPSELIFFVDDVPIRR 187
Q+N+ +G + + H P D FH Y + W+P+ + + VD +R+
Sbjct: 69 FQSNIITGKAGAQKTSEK----HHAVSPAADQAFHTYGLEWTPNYVRWTVDGQEVRK 121
>pdb|3H0O|A Chain A, The Importance Of Ch-Pi Stacking Interactions Between
Carbohydrate And Aromatic Residues In Truncated
Fibrobacter Succinogenes 1,3-1,4-Beta-D-Glucanase
Length = 240
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 55/117 (47%), Gaps = 14/117 (11%)
Query: 76 SLHSYRSGYFGASIKLQPGYTAGVITSLYLSNNQDHPGNHD---EVDIEFLGTIPGKPYT 132
+L + G F A +K+ +G ++S++L N + EVDIE LG PG +
Sbjct: 11 TLEEVQYGKFEARMKMAA--ASGTVSSMFLYQNGSEIADGRPWVEVDIEVLGKNPG---S 65
Query: 133 LQTNVYIRGSGDGRLIGRELRFHLWFDPTQD--FHHYAVLWSPSELIFFVDDVPIRR 187
Q+N+ +G + + H P D FH Y + W+P+ + + VD +R+
Sbjct: 66 FQSNIITGKAGAQKTSEK----HHAVSPAADQAFHTYGLEWTPNYVRWTVDGQEVRK 118
>pdb|2R49|A Chain A, Mutational And Structural Studies Of E85i Reveal The
Flexible Loops Of Fibrobacter Succinogenes
1,3-1,4-beta-d- Glucanaseglucanase
Length = 241
Score = 41.2 bits (95), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 56/117 (47%), Gaps = 14/117 (11%)
Query: 76 SLHSYRSGYFGASIKLQPGYTAGVITSLYLSNNQDHPGNHD---EVDIEFLGTIPGKPYT 132
+L + G F A +K+ +G ++S++L N + EVDIE LG PG +
Sbjct: 12 TLEEVQYGKFEARMKMAA--ASGTVSSMFLYQNGSEIADGRPWVEVDIEVLGKNPG---S 66
Query: 133 LQTNVYIRGSGDGRLIGRELRFHLWFDPTQD--FHHYAVLWSPSELIFFVDDVPIRR 187
Q+N+ +G + ++ H P D FH Y + W+P+ + + VD +R+
Sbjct: 67 FQSNIITGKAGAQKT---SIKHHA-VSPAADQAFHTYGLEWTPNYVRWTVDGQEVRK 119
>pdb|3HR9|A Chain A, The Truncated Fibrobacter Succinogenes 1,3-1,4-Beta-D-
Glucanase F40i Mutant
Length = 241
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 54/117 (46%), Gaps = 14/117 (11%)
Query: 76 SLHSYRSGYFGASIKLQPGYTAGVITSLYLSNNQDHPGNHD---EVDIEFLGTIPGKPYT 132
+L + G F A +K+ +G ++S+ L N + EVDIE LG PG +
Sbjct: 12 TLEEVQYGKFEARMKMAA--ASGTVSSMILYQNGSEIADGRPWVEVDIEVLGKNPG---S 66
Query: 133 LQTNVYIRGSGDGRLIGRELRFHLWFDPTQD--FHHYAVLWSPSELIFFVDDVPIRR 187
Q+N+ +G + + H P D FH Y + W+P+ + + VD +R+
Sbjct: 67 FQSNIITGKAGAQKTSEK----HHAVSPAADQAFHTYGLEWTPNYVRWTVDGQEVRK 119
>pdb|1MVE|A Chain A, Crystal Structure Of A Natural Circularly-Permutated
Jellyroll Protein: 1,3-1,4-Beta-D-Glucanase From
Fibrobacter Succinogenes
Length = 243
Score = 37.4 bits (85), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 52/117 (44%), Gaps = 14/117 (11%)
Query: 76 SLHSYRSGYFGASIKLQPGYTAGVITSLYLSNNQDHPGNHD---EVDIEFLGTIPGKPYT 132
+L + G F A K +G ++S +L N + EVDIE LG PG +
Sbjct: 14 TLEEVQYGKFEARXKXAA--ASGTVSSXFLYQNGSEIADGRPWVEVDIEVLGKNPG---S 68
Query: 133 LQTNVYIRGSGDGRLIGRELRFHLWFDPTQD--FHHYAVLWSPSELIFFVDDVPIRR 187
Q+N+ +G + + H P D FH Y + W+P+ + + VD +R+
Sbjct: 69 FQSNIITGKAGAQKTSEK----HHAVSPAADQAFHTYGLEWTPNYVRWTVDGQEVRK 121
>pdb|1ZM1|A Chain A, Crystal Structures Of Complex F. Succinogenes
1,3-1,4-Beta- D-Glucanase And Beta-1,3-1,4-Cellotriose
pdb|1ZM1|B Chain B, Crystal Structures Of Complex F. Succinogenes
1,3-1,4-Beta- D-Glucanase And Beta-1,3-1,4-Cellotriose
Length = 241
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 52/117 (44%), Gaps = 14/117 (11%)
Query: 76 SLHSYRSGYFGASIKLQPGYTAGVITSLYLSNNQDHPGNHD---EVDIEFLGTIPGKPYT 132
+L + G F A K +G ++S +L N + EVDIE LG PG +
Sbjct: 11 TLEEVQYGKFEARXKXAA--ASGTVSSXFLYQNGSEIADGRPWVEVDIEVLGKNPG---S 65
Query: 133 LQTNVYIRGSGDGRLIGRELRFHLWFDPTQD--FHHYAVLWSPSELIFFVDDVPIRR 187
Q+N+ +G + + H P D FH Y + W+P+ + + VD +R+
Sbjct: 66 FQSNIITGKAGAQKTSEK----HHAVSPAADQAFHTYGLEWTPNYVRWTVDGQEVRK 118
>pdb|3ILN|A Chain A, X-Ray Structure Of The Laminarinase From Rhodothermus
Marinus
pdb|3ILN|B Chain B, X-Ray Structure Of The Laminarinase From Rhodothermus
Marinus
Length = 251
Score = 35.0 bits (79), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 8/64 (12%)
Query: 163 DFHHYAVLWSPSELIFFVDDVPIRRYPRKSDAT-------FPL-RPMYLYGSIWDASSWA 214
DFH YA+ W+P E+ +FVDD R+P + +P +P +L +I +W
Sbjct: 166 DFHVYAIEWTPEEIRWFVDDSLYYRFPNERLTNPEADWRHWPFDQPFHLIMNIAVGGTWG 225
Query: 215 TEEG 218
++G
Sbjct: 226 GQQG 229
>pdb|1AJO|A Chain A, Circularly Permuted (1-3,1-4)-Beta-D-Glucan 4-
Glucanohydrolase Cpa16m-127
pdb|1AJO|B Chain B, Circularly Permuted (1-3,1-4)-Beta-D-Glucan 4-
Glucanohydrolase Cpa16m-127
Length = 214
Score = 34.3 bits (77), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 31/66 (46%), Gaps = 7/66 (10%)
Query: 80 YRS----GYFGASIKLQPGYTAGVITSLYLSNNQDHPGNHDEVDIEFLGTIPGKPYTLQT 135
YRS GY + ++P G+++S + H DE+DIEFLG K +Q
Sbjct: 152 YRSTNIYGYGLYEVSMKPAKNTGIVSSFFTYTGPAHGTQWDEIDIEFLGKDTTK---VQF 208
Query: 136 NVYIRG 141
N Y G
Sbjct: 209 NYYTNG 214
Score = 34.3 bits (77), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 4/63 (6%)
Query: 149 GRELRFHLWFDPTQDFHHYAVLWSPSELIFFVDDVPIRRYPRKSDATFPLRPMYLYGSIW 208
G E L FD ++ FH YA W P + ++VD V + A P P + ++W
Sbjct: 3 GHEKVISLGFDASKGFHTYAFDWQPGYIKWYVDGV----LKHTATANIPSTPGKIMMNLW 58
Query: 209 DAS 211
+ +
Sbjct: 59 NGT 61
>pdb|3ATG|A Chain A, Endo-1,3-Beta-Glucanase From Cellulosimicrobium Cellulans
Length = 256
Score = 32.3 bits (72), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 32/74 (43%)
Query: 119 DIEFLGTIPGKPYTLQTNVYIRGSGDGRLIGRELRFHLWFDPTQDFHHYAVLWSPSELIF 178
+I+ + + +P+ + V+ G G I + + FH +AV W P E+ +
Sbjct: 119 EIDIMENVGFEPHRVHGTVHGPGYSGGSGITGMYQHPQGWSFADTFHTFAVDWKPGEITW 178
Query: 179 FVDDVPIRRYPRKS 192
FVD R R S
Sbjct: 179 FVDGQQFHRVTRAS 192
>pdb|1UPS|A Chain A, Glcnac[alpha]1-4gal Releasing Endo-[beta]-Galactosidase
From Clostridium Perfringens
pdb|1UPS|B Chain B, Glcnac[alpha]1-4gal Releasing Endo-[beta]-Galactosidase
From Clostridium Perfringens
Length = 420
Score = 31.6 bits (70), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 18/24 (75%)
Query: 159 DPTQDFHHYAVLWSPSELIFFVDD 182
DPT ++H YA+ W+P+ L F+ D+
Sbjct: 209 DPTSEYHIYAMEWTPTALKFYYDN 232
>pdb|2VY0|A Chain A, The X-Ray Structure Of Endo-Beta-1,3-Glucanase From
Pyrococcus Furiosus
pdb|2VY0|B Chain B, The X-Ray Structure Of Endo-Beta-1,3-Glucanase From
Pyrococcus Furiosus
Length = 264
Score = 31.2 bits (69), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 5/70 (7%)
Query: 114 NHDEVDI-EFLGTIPGKPYTLQTNVYIRGSGDGRLIGRELRFHLWF-DPTQDFHHYAVLW 171
N E+DI EFLG +P T+ V+ G + I R D T+DFH + ++W
Sbjct: 134 NCGEIDIMEFLGH---EPRTIHGTVHGPGYSGSKGITRAYTLPEGVPDFTEDFHVFGIVW 190
Query: 172 SPSELIFFVD 181
P ++ ++VD
Sbjct: 191 YPDKIKWYVD 200
>pdb|2DYU|A Chain A, Helicobacter Pylori Formamidase Amif Contains A Fine-tuned
Cysteine- Glutamate-lysine Catalytic Triad
pdb|2DYU|B Chain B, Helicobacter Pylori Formamidase Amif Contains A Fine-tuned
Cysteine- Glutamate-lysine Catalytic Triad
pdb|2DYV|A Chain A, Helicobacter Pylori Formamidase Amif Contains A Fine-Tuned
Cysteine- Glutamate-Lysine Catalytic Triad
pdb|2DYV|B Chain B, Helicobacter Pylori Formamidase Amif Contains A Fine-Tuned
Cysteine- Glutamate-Lysine Catalytic Triad
Length = 334
Score = 31.2 bits (69), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 26/115 (22%), Positives = 50/115 (43%), Gaps = 18/115 (15%)
Query: 66 LDXXXXXXFKSLHSYRSGYFGASIKLQPGY-TAGVITSLYLSNNQDHPGNHDEVDIEFLG 124
+D ++LH+ ++GY G + + P Y T G+ T+ +LS EFL
Sbjct: 32 IDHNIESIIRTLHATKAGYPGVELIIFPEYSTQGLNTAKWLSE-------------EFLL 78
Query: 125 TIPGKPYTLQTNVYIRGSGDGRLIGRELRFHLWFDPTQDFHHYAVLWSPSELIFF 179
+PGK +T +Y + + ++ G D ++ ++ A++ P I
Sbjct: 79 DVPGK----ETELYAKACKEAKVYGVFSIMERNPDSNKNPYNTAIIIDPQGEIIL 129
>pdb|2E2K|A Chain A, Helicobacter Pylori Formamidase Amif Contains A Fine-Tuned
Cysteine- Glutamate-Lysine Catalytic Triad
pdb|2E2K|B Chain B, Helicobacter Pylori Formamidase Amif Contains A Fine-Tuned
Cysteine- Glutamate-Lysine Catalytic Triad
pdb|2E2K|C Chain C, Helicobacter Pylori Formamidase Amif Contains A Fine-Tuned
Cysteine- Glutamate-Lysine Catalytic Triad
pdb|2E2K|D Chain D, Helicobacter Pylori Formamidase Amif Contains A Fine-Tuned
Cysteine- Glutamate-Lysine Catalytic Triad
pdb|2E2K|E Chain E, Helicobacter Pylori Formamidase Amif Contains A Fine-Tuned
Cysteine- Glutamate-Lysine Catalytic Triad
pdb|2E2K|F Chain F, Helicobacter Pylori Formamidase Amif Contains A Fine-Tuned
Cysteine- Glutamate-Lysine Catalytic Triad
pdb|2E2L|A Chain A, Helicobacter Pylori Formamidase Amif Contains A Fine-Tuned
Cysteine- Glutamate-Lysine Catalytic Triad
pdb|2E2L|B Chain B, Helicobacter Pylori Formamidase Amif Contains A Fine-Tuned
Cysteine- Glutamate-Lysine Catalytic Triad
pdb|2E2L|C Chain C, Helicobacter Pylori Formamidase Amif Contains A Fine-Tuned
Cysteine- Glutamate-Lysine Catalytic Triad
pdb|2E2L|D Chain D, Helicobacter Pylori Formamidase Amif Contains A Fine-Tuned
Cysteine- Glutamate-Lysine Catalytic Triad
pdb|2E2L|E Chain E, Helicobacter Pylori Formamidase Amif Contains A Fine-Tuned
Cysteine- Glutamate-Lysine Catalytic Triad
pdb|2E2L|F Chain F, Helicobacter Pylori Formamidase Amif Contains A Fine-Tuned
Cysteine- Glutamate-Lysine Catalytic Triad
Length = 334
Score = 31.2 bits (69), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 26/115 (22%), Positives = 50/115 (43%), Gaps = 18/115 (15%)
Query: 66 LDXXXXXXFKSLHSYRSGYFGASIKLQPGY-TAGVITSLYLSNNQDHPGNHDEVDIEFLG 124
+D ++LH+ ++GY G + + P Y T G+ T+ +LS EFL
Sbjct: 32 IDHNIESIIRTLHATKAGYPGVELIIFPEYSTQGLNTAKWLSE-------------EFLL 78
Query: 125 TIPGKPYTLQTNVYIRGSGDGRLIGRELRFHLWFDPTQDFHHYAVLWSPSELIFF 179
+PGK +T +Y + + ++ G D ++ ++ A++ P I
Sbjct: 79 DVPGK----ETELYAKACKEAKVYGVFSIMERNPDSNKNPYNTAIIIDPQGEIIL 129
>pdb|1DYP|A Chain A, 1,3-Alpha-1,4-Beta-D-Galactose-4-Sulfate-3,6-Anhydro-D-
Galactose 4 Galactohydrolase
Length = 271
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 154 FHLWFDPTQDFHHYAVLWSPSELIFFVD 181
+HL FDP DFH Y V + ++ ++VD
Sbjct: 182 YHLPFDPRNDFHTYGVNVTKDKITWYVD 209
>pdb|3JUU|A Chain A, Crystal Structure Of Porphyranase B (Porb) From Zobellia
Galactanivorans
pdb|3JUU|B Chain B, Crystal Structure Of Porphyranase B (Porb) From Zobellia
Galactanivorans
Length = 280
Score = 28.9 bits (63), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 23/52 (44%), Gaps = 12/52 (23%)
Query: 162 QDFHHYAVLW-SPSELIFFVD-----------DVPIRRYPRKSDATFPLRPM 201
+DFH Y V W S E+IFF+D D I Y R T+ P+
Sbjct: 199 EDFHVYGVWWKSKDEIIFFLDGKMQSKVTPPADFDIEMYLRMVVETYDWNPV 250
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.138 0.450
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,496,883
Number of Sequences: 62578
Number of extensions: 420026
Number of successful extensions: 777
Number of sequences better than 100.0: 32
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 727
Number of HSP's gapped (non-prelim): 33
length of query: 296
length of database: 14,973,337
effective HSP length: 98
effective length of query: 198
effective length of database: 8,840,693
effective search space: 1750457214
effective search space used: 1750457214
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)