Query 022492
Match_columns 296
No_of_seqs 316 out of 1740
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 03:57:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022492.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022492hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03161 Probable xyloglucan e 100.0 6.4E-79 1.4E-83 562.6 33.1 273 1-296 1-286 (291)
2 cd02176 GH16_XET Xyloglucan en 100.0 1.3E-77 2.7E-82 550.1 32.6 251 39-296 3-263 (263)
3 cd02183 GH16_fungal_CRH1_trans 100.0 1.5E-44 3.3E-49 321.2 24.9 175 51-241 15-202 (203)
4 cd02175 GH16_lichenase lichena 100.0 1.8E-39 3.9E-44 289.9 25.2 175 48-239 27-211 (212)
5 PF00722 Glyco_hydro_16: Glyco 100.0 7.8E-36 1.7E-40 259.2 20.0 174 44-237 3-185 (185)
6 cd02178 GH16_beta_agarase Beta 100.0 8.6E-35 1.9E-39 267.1 25.5 199 34-239 17-257 (258)
7 cd00413 Glyco_hydrolase_16 gly 100.0 8.1E-35 1.7E-39 257.4 24.2 179 47-239 24-210 (210)
8 cd08023 GH16_laminarinase_like 100.0 6.1E-34 1.3E-38 257.1 23.0 181 49-239 34-235 (235)
9 cd02177 GH16_kappa_carrageenas 100.0 1.1E-31 2.3E-36 247.8 22.1 178 52-239 43-268 (269)
10 cd02180 GH16_fungal_KRE6_gluca 100.0 8.1E-31 1.8E-35 244.7 20.0 191 45-239 33-294 (295)
11 cd02182 GH16_Strep_laminarinas 100.0 2.8E-30 6.1E-35 237.4 21.8 182 49-239 42-258 (259)
12 cd08024 GH16_CCF Coelomic cyto 100.0 2.7E-28 5.9E-33 231.5 20.3 140 73-214 103-279 (330)
13 cd02179 GH16_beta_GRP beta-1,3 100.0 1.1E-27 2.4E-32 226.4 18.8 158 52-211 38-268 (321)
14 COG2273 SKN1 Beta-glucanase/Be 99.9 1.2E-24 2.6E-29 207.6 19.5 176 49-236 75-262 (355)
15 PF03935 SKN1: Beta-glucan syn 99.7 1E-16 2.2E-21 157.5 18.0 194 52-251 160-464 (504)
16 PF06955 XET_C: Xyloglucan end 99.7 2E-18 4.2E-23 120.9 3.9 35 262-296 16-51 (51)
17 cd02181 GH16_fungal_Lam16A_glu 99.6 4.9E-14 1.1E-18 131.0 13.8 153 53-214 42-251 (293)
18 PF06439 DUF1080: Domain of Un 94.3 0.68 1.5E-05 39.4 10.9 124 54-191 25-156 (185)
19 PF13385 Laminin_G_3: Concanav 93.9 1.5 3.3E-05 35.0 11.9 64 161-240 84-148 (157)
20 PF09264 Sial-lect-inser: Vibr 89.9 1.5 3.3E-05 38.6 7.4 28 162-189 92-121 (198)
21 smart00560 LamGL LamG-like jel 85.3 7.4 0.00016 31.7 8.8 68 160-242 59-129 (133)
22 PF02973 Sialidase: Sialidase, 84.5 28 0.00062 30.8 12.7 134 78-241 30-175 (190)
23 smart00210 TSPN Thrombospondin 82.5 27 0.0006 30.1 11.6 29 161-189 116-144 (184)
24 cd00152 PTX Pentraxins are pla 80.0 21 0.00046 31.3 10.1 73 160-240 88-162 (201)
25 smart00159 PTX Pentraxin / C-r 79.1 24 0.00051 31.2 10.2 73 160-241 88-163 (206)
26 PF10287 DUF2401: Putative TOS 77.3 14 0.0003 33.9 8.1 84 84-174 102-207 (235)
27 cd00110 LamG Laminin G domain; 71.7 50 0.0011 26.4 15.4 72 161-238 79-150 (151)
28 cd06482 ACD_HspB10 Alpha cryst 57.3 26 0.00056 26.9 4.9 40 55-94 26-65 (87)
29 smart00282 LamG Laminin G doma 54.2 59 0.0013 25.8 6.9 28 161-188 61-88 (135)
30 PF02210 Laminin_G_2: Laminin 50.7 1.1E+02 0.0024 23.4 9.2 75 161-240 53-127 (128)
31 PF14099 Polysacc_lyase: Polys 45.7 74 0.0016 27.9 6.7 73 156-238 146-224 (224)
32 KOG1834 Calsyntenin [Extracell 45.2 25 0.00055 36.9 3.9 53 160-214 440-492 (952)
33 cd06526 metazoan_ACD Alpha-cry 41.0 72 0.0016 23.7 5.0 42 50-94 18-61 (83)
34 PF09224 DUF1961: Domain of un 39.8 2.7E+02 0.0058 25.3 9.1 160 52-238 25-218 (218)
35 PF06832 BiPBP_C: Penicillin-B 38.2 41 0.00089 25.3 3.3 34 175-208 44-78 (89)
36 cd06470 ACD_IbpA-B_like Alpha- 31.5 1.3E+02 0.0028 22.7 5.2 44 50-94 22-71 (90)
37 PF07172 GRP: Glycine rich pro 28.7 25 0.00055 27.6 0.7 14 5-18 7-20 (95)
38 PHA02752 hypothetical protein; 28.0 2.7E+02 0.0058 24.7 6.9 30 39-68 49-79 (242)
39 PF10648 Gmad2: Immunoglobulin 27.4 2.5E+02 0.0053 21.5 6.1 49 59-109 28-85 (88)
40 cd06464 ACD_sHsps-like Alpha-c 26.8 2.2E+02 0.0047 20.4 5.6 44 51-94 19-67 (88)
41 PF07691 PA14: PA14 domain; I 24.1 1E+02 0.0022 24.7 3.6 30 160-190 57-86 (145)
42 PF11191 DUF2782: Protein of u 23.9 2.4E+02 0.0052 22.1 5.6 18 89-110 63-80 (105)
43 COG0071 IbpA Molecular chapero 22.0 3.6E+02 0.0078 22.2 6.6 45 50-94 61-111 (146)
44 cd06481 ACD_HspB9_like Alpha c 21.8 2E+02 0.0043 21.8 4.6 45 50-94 18-65 (87)
45 PF08329 ChitinaseA_N: Chitina 21.5 2.8E+02 0.006 23.2 5.7 59 164-245 37-101 (133)
46 PF00011 HSP20: Hsp20/alpha cr 20.5 3.2E+02 0.007 20.5 5.6 43 51-94 19-66 (102)
No 1
>PLN03161 Probable xyloglucan endotransglucosylase/hydrolase protein; Provisional
Probab=100.00 E-value=6.4e-79 Score=562.56 Aligned_cols=273 Identities=39% Similarity=0.788 Sum_probs=240.0
Q ss_pred CcchhhHHHHHhhhhhccccCCCCCCCCCCCCCCCcccccCccccCcCccCCCCeEEe--CCEEEEEEecCCCCeeEEec
Q 022492 1 MASILYLLLPLLILMTISSVSNGQGPPSPGYYPSSRINSIGFDQAFRNLWGPQHQRVD--QGTLTVWLDSSSGSGFKSLH 78 (296)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~cpp~p~~~~~~~~~~~~f~~~~~~~w~~~nv~v~--~g~L~Ltl~~~~Gs~i~Sk~ 78 (296)
|++|+.||+.++++.+ +++ ......+|+++|...|+.+|+.+. ++.|+|+|++.+|++|+||+
T Consensus 1 ~~~~~~~~~~~~~~~~--~~~-------------~~~~~~~f~~~~~~~w~~~~~~~~~~g~~l~L~ld~~sgs~~~Sk~ 65 (291)
T PLN03161 1 MASLKTLLVALFAALA--AFD-------------RSFVEADFSKSMYFTWGADHSSMLGNGDNLQLVLDQSSGSGIKSKR 65 (291)
T ss_pred ChhHHHHHHHHHHHHH--hcC-------------CCcccccccccceeeEcCCcEEEeCCCCEEEEEEeCCccCcEEecc
Confidence 7888888875544443 111 112467799999999999999984 67899999999999999999
Q ss_pred ceeeEEEEEEEEecCCCCCccEEEEEeccCCCCCCCCceEEEEEcCCCCCCCeEEEeeeeeCCCCCCccccceeEEecCC
Q 022492 79 SYRSGYFGASIKLQPGYTAGVITSLYLSNNQDHPGNHDEVDIEFLGTIPGKPYTLQTNVYIRGSGDGRLIGRELRFHLWF 158 (296)
Q Consensus 79 ~~~YG~~EariKlp~g~s~G~v~Afwl~~~~~~~~~~~EIDiE~lG~~~g~p~~~qtnv~~~g~~~~~~~gre~~~~l~~ 158 (296)
.|+||+||||||+|+|+++|+||||||++.+ +.+|||||||||+++++++++|+|+|.+|.+. |+++++++|
T Consensus 66 ~f~yGr~E~riKLp~G~saG~v~AFwl~s~~---~~~dEIDiEfLG~~~g~~~~vqtN~y~~g~g~-----re~~~~l~f 137 (291)
T PLN03161 66 AFLFGSIEMLIKLVPGNSAGTVTAYYLSSTG---SRHDEIDFEFLGNVSGQPYTIHTNIYTQGNGS-----REQQFRPWF 137 (291)
T ss_pred eEEEEEEEEEEEeCCCCCCCeEEEEEecCCC---CCCCeEEEEecCCCCCCceEEEeceEeCCcCC-----cceeccccC
Confidence 9999999999999998889999999999864 36999999999999999999999999988775 888999999
Q ss_pred CCCCCcEEEEEEECcceeEEEeCCeeEEEEeCCCC--CCCCC-CceeEEEEEeeCCCCCCCCCccccCCCCCCEEEEEeE
Q 022492 159 DPTQDFHHYAVLWSPSELIFFVDDVPIRRYPRKSD--ATFPL-RPMYLYGSIWDASSWATEEGRYKADYKYQPFVGQYRN 235 (296)
Q Consensus 159 d~~~dFHtY~i~Wtp~~I~fyVDG~~vrt~~~~~~--~~~P~-~Pm~l~lnlW~gg~Wat~gG~~~~d~~~~Pf~a~~~~ 235 (296)
|++++||+|+|+|+|++|+|||||++||++++.+. .+||+ +||+|++|||+|++|||+||++||||+++||+|.|++
T Consensus 138 Dpt~dFHtYsI~Wtp~~I~wyVDG~~iRt~~~~~~~g~~yP~~~pM~i~~siW~g~~wAt~gG~~kidw~~aPf~a~~~~ 217 (291)
T PLN03161 138 DPTADFHNYTIHWNPSEVVWYVDGTPIRVFRNYENEGIAYPNKQGMRVYSSLWNADNWATQGGRVKIDWTLAPFVARGRR 217 (291)
T ss_pred CCccCcEEEEEEEchhhEEEEECCEEEEEEEcccccCCcCCCccceEEEEeeecCCCcccCCCceeccCCcCCeeEEeee
Confidence 99999999999999999999999999999987554 67997 8999999999999999999999999999999999999
Q ss_pred EEEeeecCCCC---CCCCCCC-CCCC---CCCCCCHHHHHHHHHHhhcCEEEecccCCCCCCC-CCCCC
Q 022492 236 FKIAGCTADGP---SGCHPPP-ASPS---GSGVLSQQQVAAMQWVQRNYLVYNYCYDPKRDHT-EIPEC 296 (296)
Q Consensus 236 ~~v~~~~~~~~---~~c~~~~-~~~~---~~~~l~~~~~~~~~~~~~~~~~y~yc~d~~r~~~-~~~ec 296 (296)
|++++|.+.+. ..|...+ ..+| .++.|+++|+++|+|||+||||||||+|++|||+ +||||
T Consensus 218 f~~~~C~~~~~~~~~~c~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~m~Y~YC~D~~R~~~~~p~EC 286 (291)
T PLN03161 218 FRARACKWNGPVSIKQCADPTPSNWWTSPSYSQLTNAQLTQMKKVRDNFMIYDYCKDTKRFNGVMPPEC 286 (291)
T ss_pred EEEEeeccCCCCCccccCCCCccccccCccccCCCHHHHHHHHHHHhCcEEEeccCCCCcCCCCcCccc
Confidence 99999987542 4686542 2222 2368999999999999999999999999999998 89999
No 2
>cd02176 GH16_XET Xyloglucan endotransglycosylase, member of glycosyl hydrolase family 16. Xyloglucan endotransglycosylases (XETs) cleave and religate xyloglucan polymers in plant cell walls via a transglycosylation mechanism. Xyloglucan is a soluble hemicellulose with a backbone of beta-1,4-linked glucose units, partially substituted with alpha-1,6-linked xylopyranose branches. It binds noncovalently to cellulose, cross-linking the adjacent cellulose microfibrils, giving it a key structural role as a matrix polymer. Therefore, XET plays an important role in all plant processes that require cell wall remodeling.
Probab=100.00 E-value=1.3e-77 Score=550.12 Aligned_cols=251 Identities=51% Similarity=0.957 Sum_probs=229.7
Q ss_pred ccCccccCcCccCCCCeEEe--CCEEEEEEecCCCCeeEEecceeeEEEEEEEEecCCCCCccEEEEEeccCCCCCCCCc
Q 022492 39 SIGFDQAFRNLWGPQHQRVD--QGTLTVWLDSSSGSGFKSLHSYRSGYFGASIKLQPGYTAGVITSLYLSNNQDHPGNHD 116 (296)
Q Consensus 39 ~~~f~~~~~~~w~~~nv~v~--~g~L~Ltl~~~~Gs~i~Sk~~~~YG~~EariKlp~g~s~G~v~Afwl~~~~~~~~~~~ 116 (296)
..+|.++|...|+++||++. |+.|+|+|++.+|++|+|++.|+||+||||||||+|+++|+||||||++++ |+.++
T Consensus 3 ~~~f~~~~~~~w~~~~~~~~~~g~~~~L~ld~~s~~~i~Sk~~f~YG~~E~riKlp~g~s~G~~pAFwl~~~~--wp~~~ 80 (263)
T cd02176 3 AASFDENFFVTWGPDHIRVSNDGTSVQLTLDQSSGSGFKSKNKYLFGFFSMRIKLPPGDSAGTVTAFYLSSQG--PDNHD 80 (263)
T ss_pred cCCccccceeeEcCCcEEEeCCCCEEEEEEcCCCCccEEEccEEEEEEEEEEEEeCCCCCCCeEEEEEECCCC--CCCCC
Confidence 46799999999999999997 368999999999999999999999999999999998889999999999986 78899
Q ss_pred eEEEEEcCCCCCCCeEEEeeeeeCCCCCCccccceeEEecCCCCCCCcEEEEEEECcceeEEEeCCeeEEEEeCCCC--C
Q 022492 117 EVDIEFLGTIPGKPYTLQTNVYIRGSGDGRLIGRELRFHLWFDPTQDFHHYAVLWSPSELIFFVDDVPIRRYPRKSD--A 194 (296)
Q Consensus 117 EIDiE~lG~~~g~p~~~qtnv~~~g~~~~~~~gre~~~~l~~d~~~dFHtY~i~Wtp~~I~fyVDG~~vrt~~~~~~--~ 194 (296)
|||||++|+++|+|+++|||+|.+|.++ |+++++++||++++||+|+|+|+|++|+|||||++||++++.+. .
T Consensus 81 EID~E~lGn~~g~~~~~qtnv~~~g~g~-----r~~~~~l~fdpt~dFHtY~i~Wtp~~I~fyVDG~~vr~~~~~~~~g~ 155 (263)
T cd02176 81 EIDFEFLGNVTGQPYTLQTNVFANGVGG-----REQRIYLWFDPTADFHTYSILWNPHQIVFYVDDVPIRVFKNNEALGV 155 (263)
T ss_pred eEEEEEecccCCCceEEEEEEeCCCCCC-----CceeeecCCCCCCCeEEEEEEEccceEEEEECCEEEEEEecccccCC
Confidence 9999999999999999999999988765 78889999999999999999999999999999999999998654 6
Q ss_pred CCCC-CceeEEEEEeeCCCCCCCCCccccCCCCCCEEEEEeEEEEeeecCCCC-CCCCCCC-CCC---CCCCCCCHHHHH
Q 022492 195 TFPL-RPMYLYGSIWDASSWATEEGRYKADYKYQPFVGQYRNFKIAGCTADGP-SGCHPPP-ASP---SGSGVLSQQQVA 268 (296)
Q Consensus 195 ~~P~-~Pm~l~lnlW~gg~Wat~gG~~~~d~~~~Pf~a~~~~~~v~~~~~~~~-~~c~~~~-~~~---~~~~~l~~~~~~ 268 (296)
.||+ +||+|++|||+||+|||+||++++||+++||+|.|++|+|.+|.+.+. ..|.... ..+ ..+++|+++|++
T Consensus 156 ~~P~~~Pm~l~~niW~g~~WAt~gG~~~~d~~~aPf~a~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 235 (263)
T cd02176 156 PYPSSQPMGVYASIWDGSDWATQGGRVKIDWSYAPFVASYRDFKLDGCVVDPGDSFSSCSCTEDWWNGSTYQQLSANQQR 235 (263)
T ss_pred CCCccceEEEEEeeEcCCCcccCCCcccccCCCCCeeEEEeeEEEeeeecCCCCccccCCCccccccccccccCCHHHHH
Confidence 7998 999999999999999999999999999999999999999999987544 4454432 222 234789999999
Q ss_pred HHHHHhhcCEEEecccCCCCCCCCCCCC
Q 022492 269 AMQWVQRNYLVYNYCYDPKRDHTEIPEC 296 (296)
Q Consensus 269 ~~~~~~~~~~~y~yc~d~~r~~~~~~ec 296 (296)
+|+|||+||||||||+|++|||.+||||
T Consensus 236 ~~~~~~~~~~~y~yC~d~~r~~~~p~ec 263 (263)
T cd02176 236 AMEWVRRNYMVYDYCDDRKRYPVPPPEC 263 (263)
T ss_pred HHHHHHHCCEEEecCCCCCcCCCCcCCC
Confidence 9999999999999999999999999999
No 3
>cd02183 GH16_fungal_CRH1_transglycosylase glycosylphosphatidylinositol-glucanosyltransferase. Group of fungal GH16 members related to Saccharomyces cerevisiae Crh1p. Chr1p and Crh2p are transglycosylases that are required for the linkage of chitin to beta(1-3)glucose branches of beta(1-6)glucan, an important step in the assembly of new cell wall. Both have been shown to be glycosylphosphatidylinositol (GPI)-anchored. A third homologous protein, Crr1p, functions in the formation of the spore wall. They belongs to the family 16 of glycosyl hydrolases that includes lichenase, xyloglucan endotransglycosylase (XET), beta-agarase, kappa-carrageenase, endo-beta-1,3-glucanase, endo-beta-1,3-1,4-glucanase, and endo-beta-galactosidase, all of which have a conserved jelly roll fold with a deep active site channel harboring the catalytic residues.
Probab=100.00 E-value=1.5e-44 Score=321.18 Aligned_cols=175 Identities=23% Similarity=0.439 Sum_probs=154.4
Q ss_pred CCCCeEEeCCEEEEEEecC-CCCeeEEecceeeEEEEEEEEecCCCCCccEEEEEeccCCCCCCCCceEEEEEcCCCCCC
Q 022492 51 GPQHQRVDQGTLTVWLDSS-SGSGFKSLHSYRSGYFGASIKLQPGYTAGVITSLYLSNNQDHPGNHDEVDIEFLGTIPGK 129 (296)
Q Consensus 51 ~~~nv~v~~g~L~Ltl~~~-~Gs~i~Sk~~~~YG~~EariKlp~g~s~G~v~Afwl~~~~~~~~~~~EIDiE~lG~~~g~ 129 (296)
..+||++.+++|.|+|++. ++++|.|++.|+|||||||||+|.+ +|+||||||++++ ++|||||++|++
T Consensus 15 ~~~~~~~~~~~~~l~~~~~~~~~~i~s~~~f~YG~~EaR~Klp~g--~G~wpAfWl~~~~-----~gEIDIE~~G~~--- 84 (203)
T cd02183 15 TSGTVDYDDDGASLTIPKRGDGPTISSTFYIFYGKVEVTMKAAPG--QGIVSSFVLQSDD-----LDEIDWEWVGGD--- 84 (203)
T ss_pred cCCcEeECCCeEEEEEcCCCCCCeEEeccEEEeEEEEEEEEecCC--CeEEEEEEEECCC-----CCEEEEEecCCC---
Confidence 5778999888899999998 5899999999999999999999999 9999999999975 799999999964
Q ss_pred CeEEEeeeeeCCCCCCccccceeEEecCCCCCCCcEEEEEEECcceeEEEeCCeeEEEEeCCC---CCCCCCCceeEEEE
Q 022492 130 PYTLQTNVYIRGSGDGRLIGRELRFHLWFDPTQDFHHYAVLWSPSELIFFVDDVPIRRYPRKS---DATFPLRPMYLYGS 206 (296)
Q Consensus 130 p~~~qtnv~~~g~~~~~~~gre~~~~l~~d~~~dFHtY~i~Wtp~~I~fyVDG~~vrt~~~~~---~~~~P~~Pm~l~ln 206 (296)
+..+|+|+|.++.... .++++.+.+.++++++||+|+|+|+|++|+|||||+++|++++.+ ...||++||+|++|
T Consensus 85 ~~~~~tn~~~~g~~~~--~~~~~~~~~~~~~~~dFHtY~veWtpd~I~~yVDG~~v~~~~~~~~~~~~~~p~~P~~l~ln 162 (203)
T cd02183 85 LTQVQTNYFGKGNTTT--YDRGGYHPVPNPQTEEFHTYTIDWTKDRITWYIDGKVVRTLTKADTTGGYGYPQTPMRLQIG 162 (203)
T ss_pred CCEEEeEEECCCCCCC--CCCceEeeCCCCCCcCcEEEEEEEecCEEEEEECCEEEEEEehhhcccCCCCCCCCcEEEEE
Confidence 4689999997665422 225566778888889999999999999999999999999998754 26799999999999
Q ss_pred EeeCCC---------CCCCCCccccCCCCCCEEEEEeEEEEeee
Q 022492 207 IWDASS---------WATEEGRYKADYKYQPFVGQYRNFKIAGC 241 (296)
Q Consensus 207 lW~gg~---------Wat~gG~~~~d~~~~Pf~a~~~~~~v~~~ 241 (296)
+|+||+ || || ++||+.+||+|.|++|+|+.+
T Consensus 163 ~W~gg~~~~~~g~~~Wa--Gg--~~d~~~~P~~~~vd~v~v~~~ 202 (203)
T cd02183 163 IWAGGDPSNAPGTIEWA--GG--ETDYDKGPFTMYVKSVTVTDY 202 (203)
T ss_pred EecCCCccccCCcccCC--CC--ccCCCCCCEEEEEEEEEEEeC
Confidence 999985 98 77 799999999999999999754
No 4
>cd02175 GH16_lichenase lichenase, member of glycosyl hydrolase family 16. Lichenase, also known as 1,3-1,4-beta-glucanase, is a member of glycosyl hydrolase family 16, that specifically cleaves 1,4-beta-D-glucosidic bonds in mixed-linked beta glucans that also contain 1,3-beta-D-glucosidic linkages. Natural substrates of beta-glucanase are beta-glucans from grain endosperm cell walls or lichenan from the Islandic moss, Cetraria islandica. This protein is found not only in bacteria but also in anaerobic fungi. This domain includes two seven-stranded antiparallel beta-sheets that are adjacent to one another forming a compact, jellyroll beta-sandwich structure.
Probab=100.00 E-value=1.8e-39 Score=289.95 Aligned_cols=175 Identities=26% Similarity=0.508 Sum_probs=149.7
Q ss_pred CccCCCCeEEeCCEEEEEEecCC-------CCeeEEecceeeEEEEEEEEecCCCCCccEEEEEeccCCCCCCCCceEEE
Q 022492 48 NLWGPQHQRVDQGTLTVWLDSSS-------GSGFKSLHSYRSGYFGASIKLQPGYTAGVITSLYLSNNQDHPGNHDEVDI 120 (296)
Q Consensus 48 ~~w~~~nv~v~~g~L~Ltl~~~~-------Gs~i~Sk~~~~YG~~EariKlp~g~s~G~v~Afwl~~~~~~~~~~~EIDi 120 (296)
..|.++||++++|.|+|++.+.. +++|.|+.+|+||+||||||+|.+ +|+|+||||++.+.....++||||
T Consensus 27 ~~~~~~nv~v~~g~L~l~~~~~~~~~~~~tsg~i~S~~~f~yG~~ear~k~~~~--~G~~~Afwl~~~~~~~~~~~EIDi 104 (212)
T cd02175 27 CTWSADNVEFSDGGLALTLTNDTYGEKPYACGEYRTRGFYGYGRYEVRMKPAKG--SGVVSSFFTYTGPYDGDPHDEIDI 104 (212)
T ss_pred eeEccccEEEECCeEEEEEeCCcCCCCccccceEEECceEEeeEEEEEEEcCCC--CeEEEEEEEEecCCCCCCCCEEEE
Confidence 46889999999999999998764 578999999999999999999988 999999999986433345799999
Q ss_pred EEcCCCCCCCeEEEeeeeeCCCCCCccccceeEEecCCCCCCCcEEEEEEECcceeEEEeCCeeEEEEeCCCCCCCCCCc
Q 022492 121 EFLGTIPGKPYTLQTNVYIRGSGDGRLIGRELRFHLWFDPTQDFHHYAVLWSPSELIFFVDDVPIRRYPRKSDATFPLRP 200 (296)
Q Consensus 121 E~lG~~~g~p~~~qtnv~~~g~~~~~~~gre~~~~l~~d~~~dFHtY~i~Wtp~~I~fyVDG~~vrt~~~~~~~~~P~~P 200 (296)
|++|++. ..+++|+|.++.+. ++..+.++++++++||+|+|+|+|++|+|||||+++++++..+ ..+|++|
T Consensus 105 E~~g~~~---~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~H~Y~v~W~~~~i~~yvDg~~v~~~~~~~-~~~p~~p 175 (212)
T cd02175 105 EFLGKDT---TKVQFNYYTNGVGG-----HEKLIDLGFDASEGFHTYAFEWEPDSIRWYVDGELVHEATATD-PNIPDTP 175 (212)
T ss_pred EEccCCC---CEeEEEEECCCCCC-----CceEEeCCCCcccccEEEEEEEeCCEEEEEECCEEEEEEcCcc-CCCCCCC
Confidence 9999764 46889988776543 3345667888899999999999999999999999999998743 4689999
Q ss_pred eeEEEEEeeCC---CCCCCCCccccCCCCCCEEEEEeEEEEe
Q 022492 201 MYLYGSIWDAS---SWATEEGRYKADYKYQPFVGQYRNFKIA 239 (296)
Q Consensus 201 m~l~lnlW~gg---~Wat~gG~~~~d~~~~Pf~a~~~~~~v~ 239 (296)
|+|++|+|.++ +|+ | ++|. .+|++|+||+|||+
T Consensus 176 ~~i~~n~w~~~~~~~W~---G--~~~~-~~p~~~~vd~vr~~ 211 (212)
T cd02175 176 GKIMMNLWPGDGVDDWL---G--PFDG-GTPLTAEYDWVSYT 211 (212)
T ss_pred cEEEEEEEcCCCCCCcC---C--cCCC-CCCeEEEEEEEEEe
Confidence 99999999985 597 5 5666 89999999999986
No 5
>PF00722 Glyco_hydro_16: Glycosyl hydrolases family 16; InterPro: IPR000757 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 16 GH16 from CAZY comprises enzymes with a number of known activities; lichenase (3.2.1.73 from EC); xyloglucan xyloglucosyltransferase (2.4.1.207 from EC); agarase (3.2.1.81 from EC); kappa-carrageenase (3.2.1.83 from EC); endo-beta-1,3-glucanase (3.2.1.39 from EC); endo-beta-1,3-1,4-glucanase (3.2.1.6 from EC); endo-beta-galactosidase (3.2.1.103 from EC).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3DGT_A 2CL2_A 2WLQ_A 2WNE_A 2W39_A 2W52_A 3ILN_A 4DFS_A 1UMZ_A 1UN1_B ....
Probab=100.00 E-value=7.8e-36 Score=259.21 Aligned_cols=174 Identities=32% Similarity=0.631 Sum_probs=148.7
Q ss_pred ccCcCccCCCCeEEeCC-EEEEEEecC-----CCCeeEEecceeeEEEEEEEEecCCCCCccEEEEEeccCCCCCCCCce
Q 022492 44 QAFRNLWGPQHQRVDQG-TLTVWLDSS-----SGSGFKSLHSYRSGYFGASIKLQPGYTAGVITSLYLSNNQDHPGNHDE 117 (296)
Q Consensus 44 ~~~~~~w~~~nv~v~~g-~L~Ltl~~~-----~Gs~i~Sk~~~~YG~~EariKlp~g~s~G~v~Afwl~~~~~~~~~~~E 117 (296)
+.+...|.++||++.+| .|+|++++. .+++|.|++.++||+||+|||++.+ +|+++||||.+.+. |+.++|
T Consensus 3 ~~~~~~~~~~nv~~~~g~~L~L~~~~~~~~~~~sg~i~s~~~~~yG~~ear~k~~~~--~G~~~afwl~~~~~-~~~~~E 79 (185)
T PF00722_consen 3 DQYNCTWSPDNVTVEDGGNLVLRADKEPGKPYTSGEIQSKFSFKYGRFEARIKAPPG--PGVWPAFWLTGADG-WPDGGE 79 (185)
T ss_dssp CTEEEEETCCGEEEETTSEEEEEEEEEETEEEEEEEEEESSEBSSEEEEEEEECSCS--TTEEEEEEEETTGS-TTTTEE
T ss_pred CceEEeeCCCcEEEcCCCEEEEEEEecccCceEeCEEEEcceeECcEEEEEEEecCC--CceEeccccccccc-ccchhh
Confidence 34667899999999987 999999983 4678999999999999999999988 99999999976444 788999
Q ss_pred EEEEEcCCCCCCCeEEEeeeeeCCCCCCccccceeEEecCCCCCCCcEEEEEEECcceeEEEeCCeeEEEEeCCCC--CC
Q 022492 118 VDIEFLGTIPGKPYTLQTNVYIRGSGDGRLIGRELRFHLWFDPTQDFHHYAVLWSPSELIFFVDDVPIRRYPRKSD--AT 195 (296)
Q Consensus 118 IDiE~lG~~~g~p~~~qtnv~~~g~~~~~~~gre~~~~l~~d~~~dFHtY~i~Wtp~~I~fyVDG~~vrt~~~~~~--~~ 195 (296)
||||++|+++. .+++|+|..+.+.. ..+.++.+.+++.++||+|+|+|+|++|+|||||++++++..... ..
T Consensus 80 IDiE~~g~~~~---~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~h~y~~~W~~~~i~fyiDg~~~~~~~~~~~~~~~ 153 (185)
T PF00722_consen 80 IDIEFLGNDPT---QVQTNVHWNGDGDS---NWEKRVPLGFDPSTDFHTYGFEWTPDRIRFYIDGKLVRTVTNSDVPGSP 153 (185)
T ss_dssp EEEEEETTSTT---EEEEEEEBTTBSCE---EEEEEEETSSTTTTSEEEEEEEEETTEEEEEETTEEEEEEESSGSTTTC
T ss_pred hhhhhcccccc---ceeeeeeecccCCc---ccceeeccccCcCCCcEEEEEEEecCeEEEEECCEEEEEEecccccccc
Confidence 99999998654 59999998877651 124567778899999999999999999999999999999998653 35
Q ss_pred CCC-CceeEEEEEeeCCCCCCCCCccccCCCCCCEEEEEeEEE
Q 022492 196 FPL-RPMYLYGSIWDASSWATEEGRYKADYKYQPFVGQYRNFK 237 (296)
Q Consensus 196 ~P~-~Pm~l~lnlW~gg~Wat~gG~~~~d~~~~Pf~a~~~~~~ 237 (296)
||. .||+|.+++|.+++|++..| .|+||+||
T Consensus 154 ~P~~~~~~~~~~~w~~~~~~~~~~-----------~m~vDwvr 185 (185)
T PF00722_consen 154 YPFSTPMNLALGLWPGGDWAGPAG-----------EMEVDWVR 185 (185)
T ss_dssp SSEEEEEEEEEEECEBTTTHSSEC-----------EEEEEEEE
T ss_pred CcccceeEEEEccccCCCCCCCCC-----------EEEEEeEC
Confidence 898 99999999999999885544 68888876
No 6
>cd02178 GH16_beta_agarase Beta-agarase, member of glycosyl hydrolase family 16. Beta-agarase is a glycosyl hydrolase family 16 (GH16) member that hydrolyzes the internal beta-1,4-linkage of agarose, a hydrophilic polysaccharide found in the cell wall of Rhodophyceaea, marine red algae. Agarose is a linear chain of galactose units linked by alternating L-alpha-1,3- and D-beta-1,4-linkages that are additionally modified by a 3,6-anhydro-bridge. Agarose forms thermo-reversible gels that are widely used in the food industry or as a laboratory medium. While beta-agarases are also found in two other families derived from the sequence-based classification of glycosyl hydrolases (GH50, and GH86) the GH16 members are most abundant. This domain adopts a curved beta-sandwich conformation, with a tunnel-shaped active site cavity, referred to as a jellyroll fold.
Probab=100.00 E-value=8.6e-35 Score=267.14 Aligned_cols=199 Identities=17% Similarity=0.230 Sum_probs=148.5
Q ss_pred CCcccccCccccCcC------cc--------C--------CCCeEEeCCEEEEEEecCC-----------CCeeEEecce
Q 022492 34 SSRINSIGFDQAFRN------LW--------G--------PQHQRVDQGTLTVWLDSSS-----------GSGFKSLHSY 80 (296)
Q Consensus 34 ~~~~~~~~f~~~~~~------~w--------~--------~~nv~v~~g~L~Ltl~~~~-----------Gs~i~Sk~~~ 80 (296)
..|.+...|.|+|+. .| . ++||++++|.|+|++.++. ++.|.|++.+
T Consensus 17 ~~W~lv~~f~DeFdg~~ld~~~W~~~~~~~w~~~~~~~y~~~nv~v~~G~L~i~a~~~~~~~~~~~~~~tsg~i~t~~~~ 96 (258)
T cd02178 17 GEWELNESVSDEFNGTSLDTSKWNPNNPNGWTGRGPTEFSADNVSVEDGNLVLSATRHPGTELGNGYKVTTGSITSKEKV 96 (258)
T ss_pred CceEEcCcccccCCCCccccccCCCCCCCCCCCCcCceEccCCeEEECCEEEEEEEcCCCCcCCCCccEEEEEEEeCCce
Confidence 566655568887762 23 2 5689999999999998764 2578999999
Q ss_pred eeEEEEEEEEecCCCCCccEEEEEeccCCCCCCCCceEEE-EEcCCCCC--CCeEEEeeeeeCCCCCCccccc---eeEE
Q 022492 81 RSGYFGASIKLQPGYTAGVITSLYLSNNQDHPGNHDEVDI-EFLGTIPG--KPYTLQTNVYIRGSGDGRLIGR---ELRF 154 (296)
Q Consensus 81 ~YG~~EariKlp~g~s~G~v~Afwl~~~~~~~~~~~EIDi-E~lG~~~g--~p~~~qtnv~~~g~~~~~~~gr---e~~~ 154 (296)
+|||||||||+|.+ . ++|||||++.+ ++.++|||| |++|+..+ .+..+++++|..+.+......+ ...+
T Consensus 97 ~YG~~EaR~K~p~~--~-~~pAfW~~~~~--~~~~gEIDI~E~~g~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~ 171 (258)
T cd02178 97 KYGYFEARAKASNL--P-MSSAFWLLSDT--KDSTTEIDILEHYGGDREEWFATRMNSNTHVFIRDPEQDYQPKDDGSWY 171 (258)
T ss_pred EEEEEEEEEEcCCC--C-ccceEEEccCC--CCCCCcEEhhhccCCCCCccccceeeeeEEEccCCCCCCccccccceee
Confidence 99999999999976 4 47999999986 467999999 99997632 2457888876433221100001 1234
Q ss_pred ecCCCCCCCcEEEEEEEC-cceeEEEeCCeeEEEEeCCCC-CCCC-CCceeEEEEEeeCCCCCCCCCccccCCCCCCEEE
Q 022492 155 HLWFDPTQDFHHYAVLWS-PSELIFFVDDVPIRRYPRKSD-ATFP-LRPMYLYGSIWDASSWATEEGRYKADYKYQPFVG 231 (296)
Q Consensus 155 ~l~~d~~~dFHtY~i~Wt-p~~I~fyVDG~~vrt~~~~~~-~~~P-~~Pm~l~lnlW~gg~Wat~gG~~~~d~~~~Pf~a 231 (296)
...++.+++||+|+|+|+ |++|+|||||++++++++.+. ...| ++||+|+||++.|| |+...+. ...-...|..|
T Consensus 172 ~~~~~~~~~fHtY~veW~~p~~i~fyvDG~~~~~~~~~~~~~~~~f~~p~~liln~avg~-w~g~~~~-~~~~~~~p~~m 249 (258)
T cd02178 172 YNPTELADDFHVYGVYWKDPDTIRFYIDGVLVRTVENSEITDGTGFDQPMYIIIDTETYD-WRGEPTD-EELADDSKNTF 249 (258)
T ss_pred cCCCccccCeEEEEEEEcCCCeEEEEECCEEEEEEcCcccCcCCcCCCCeEEEEEecccc-CCCCCCc-cccCCCCCCeE
Confidence 455677899999999999 999999999999999987443 3355 59999999999988 9832121 22234569999
Q ss_pred EEeEEEEe
Q 022492 232 QYRNFKIA 239 (296)
Q Consensus 232 ~~~~~~v~ 239 (296)
+||+|||.
T Consensus 250 ~VDYVRvy 257 (258)
T cd02178 250 YVDYVRVY 257 (258)
T ss_pred EEEEEEEe
Confidence 99999985
No 7
>cd00413 Glyco_hydrolase_16 glycosyl hydrolase family 16. The O-Glycosyl hydrolases are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A glycosyl hydrolase classification system based on sequence similarity has led to the definition of more than 95 different families inlcuding glycosyl hydrolase family 16. Family 16 includes lichenase, xyloglucan endotransglycosylase (XET), beta-agarase, kappa-carrageenase, endo-beta-1,3-glucanase, endo-beta-1,3-1,4-glucanase, and endo-beta-galactosidase, all of which have a conserved jelly roll fold with a deep active site channel harboring the catalytic residues.
Probab=100.00 E-value=8.1e-35 Score=257.38 Aligned_cols=179 Identities=32% Similarity=0.566 Sum_probs=149.2
Q ss_pred cCccCCCCeEEeC-CEEEEEEecCC------CCeeEE-ecceeeEEEEEEEEecCCCCCccEEEEEeccCCCCCCCCceE
Q 022492 47 RNLWGPQHQRVDQ-GTLTVWLDSSS------GSGFKS-LHSYRSGYFGASIKLQPGYTAGVITSLYLSNNQDHPGNHDEV 118 (296)
Q Consensus 47 ~~~w~~~nv~v~~-g~L~Ltl~~~~------Gs~i~S-k~~~~YG~~EariKlp~g~s~G~v~Afwl~~~~~~~~~~~EI 118 (296)
...|.++||.+++ |.|+|++.+.+ +++|.| ++.++||+||+|||++.+ .|+|+||||++.+..++..+||
T Consensus 24 ~~~~~~~nv~~~~~G~L~l~~~~~~~~~~~~sg~i~s~~~~~~yG~~ear~k~~~~--~G~~~afw~~~~~~~~~~~~EI 101 (210)
T cd00413 24 NMTNSPNNVYVENDGGLTLRTDRDQTDGPYSSAEIDSQKNNYTYGYYEARAKLAGG--PGAVSAFWTYSDDDDPPDGGEI 101 (210)
T ss_pred eEEECccCEEEeCCCeEEEEEEecCCCCceEeEEEEeCcceEeeEEEEEEEEcCCC--CceEEEEEEeCCCCCCCCCCeE
Confidence 3467899999997 99999998764 468999 999999999999999988 9999999999987555789999
Q ss_pred EEEEcCCCCCCCeEEEeeeeeCCCCCCccccceeEEecCCCCCCCcEEEEEEECcceeEEEeCCeeEEEEeCCCCCCCCC
Q 022492 119 DIEFLGTIPGKPYTLQTNVYIRGSGDGRLIGRELRFHLWFDPTQDFHHYAVLWSPSELIFFVDDVPIRRYPRKSDATFPL 198 (296)
Q Consensus 119 DiE~lG~~~g~p~~~qtnv~~~g~~~~~~~gre~~~~l~~d~~~dFHtY~i~Wtp~~I~fyVDG~~vrt~~~~~~~~~P~ 198 (296)
|||++|++ +..+++++|..+.+......+...+.++++..++||+|+|+|+|+.|+|||||++++++++. +|.
T Consensus 102 DiE~~~~~---~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~H~Y~~~W~~~~i~~yvDG~~~~~~~~~----~p~ 174 (210)
T cd00413 102 DIEFLGRD---PTTVQTNVHWPGYGAGATTGEEKSVHLPFDPADDFHTYRVDWTPGEITFYVDGVLVATITNQ----VPD 174 (210)
T ss_pred EEEecccC---CCeEEEEEecCCCCcccccccceeecCCCCCccCeEEEEEEEeCCEEEEEECCEEEEEECCC----CCC
Confidence 99999976 34688888876543200011334455666688999999999999999999999999999863 889
Q ss_pred CceeEEEEEeeCCCCCCCCCccccCCCCCCEEEEEeEEEEe
Q 022492 199 RPMYLYGSIWDASSWATEEGRYKADYKYQPFVGQYRNFKIA 239 (296)
Q Consensus 199 ~Pm~l~lnlW~gg~Wat~gG~~~~d~~~~Pf~a~~~~~~v~ 239 (296)
+||+|+||+|.+++|+ | ..+....|..|.|++|||.
T Consensus 175 ~p~~i~ln~~~~~~~~---~--~~~~~~~~~~~~Vd~vrvy 210 (210)
T cd00413 175 DPMNIILNLWSDGGWW---W--GGPPPGAPAYMEIDWVRVY 210 (210)
T ss_pred CCcEEEEEEEECCCCc---c--cCCCCCCCcEEEEEEEEEC
Confidence 9999999999999887 2 1355789999999999973
No 8
>cd08023 GH16_laminarinase_like Laminarinase, member of the glycosyl hydrolase family 16. Laminarinase, also known as glucan endo-1,3-beta-D-glucosidase, is a glycosyl hydrolase family 16 member that hydrolyzes 1,3-beta-D-glucosidic linkages in 1,3-beta-D-glucans such as laminarins, curdlans, paramylons, and pachymans, with very limited action on mixed-link (1,3-1,4-)-beta-D-glucans.
Probab=100.00 E-value=6.1e-34 Score=257.13 Aligned_cols=181 Identities=24% Similarity=0.417 Sum_probs=146.2
Q ss_pred ccCCCCeEEeCCEEEEEEecCC----------CCeeEE--ecceeeEEEEEEEEecCCCCCccEEEEEeccCCCC---CC
Q 022492 49 LWGPQHQRVDQGTLTVWLDSSS----------GSGFKS--LHSYRSGYFGASIKLQPGYTAGVITSLYLSNNQDH---PG 113 (296)
Q Consensus 49 ~w~~~nv~v~~g~L~Ltl~~~~----------Gs~i~S--k~~~~YG~~EariKlp~g~s~G~v~Afwl~~~~~~---~~ 113 (296)
.+.++||++++|.|+|++.+.+ ++.|.| ++.|+|||||||||+|.+ +|++|||||++.+.. |+
T Consensus 34 ~~~~~nv~v~~G~L~i~~~~~~~~~~~~~~~~sg~i~S~~~~~~~yG~~E~r~k~~~~--~G~~pafWl~~~~~~~~~w~ 111 (235)
T cd08023 34 TYRPENAYVEDGNLVITARKEPDKGGDGYPYTSGRITTKGKFSFTYGRVEARAKLPKG--QGTWPAFWMLGENIKYVGWP 111 (235)
T ss_pred eCCCCCeEEECCEEEEEEEECCCCCCCcccEEEEEEEECCCcceeCCEEEEEEEccCC--CCceeEEEEcCCCCCCCCCC
Confidence 5578899999999999987654 247889 889999999999999998 999999999998753 67
Q ss_pred CCceEEE-EEcCCCCCCCeEEEeeeeeCCCCCCccccceeEEecCC-CCCCCcEEEEEEECcceeEEEeCCeeEEEEeCC
Q 022492 114 NHDEVDI-EFLGTIPGKPYTLQTNVYIRGSGDGRLIGRELRFHLWF-DPTQDFHHYAVLWSPSELIFFVDDVPIRRYPRK 191 (296)
Q Consensus 114 ~~~EIDi-E~lG~~~g~p~~~qtnv~~~g~~~~~~~gre~~~~l~~-d~~~dFHtY~i~Wtp~~I~fyVDG~~vrt~~~~ 191 (296)
..+|||| |++|+. +..+++++|..+..... .+....+.... +..++||+|+++|+|++|+|||||++++++++.
T Consensus 112 ~~~EIDI~E~~g~~---~~~~~~~~h~~~~~~~~-~~~~~~~~~~~~~~~~~fHtY~~~W~p~~i~~yvDG~~v~~~~~~ 187 (235)
T cd08023 112 ASGEIDIMEYVGNE---PNTVYGTLHGGATNDGN-NGSGGSYTLPTDDLSDDFHTYAVEWTPDKITFYVDGKLYFTYTNP 187 (235)
T ss_pred CCCcceeEecCCCC---CCeEEEEEECCCCCCCC-CcccccEECCCCCcCCCcEEEEEEEECCEEEEEECCEEEEEEccc
Confidence 8899999 999976 34788889877654100 11233455544 689999999999999999999999999999876
Q ss_pred CCC---CCC-CCceeEEEEEeeCCCCCCCCCccccCCCCCCEEEEEeEEEEe
Q 022492 192 SDA---TFP-LRPMYLYGSIWDASSWATEEGRYKADYKYQPFVGQYRNFKIA 239 (296)
Q Consensus 192 ~~~---~~P-~~Pm~l~lnlW~gg~Wat~gG~~~~d~~~~Pf~a~~~~~~v~ 239 (296)
... .+| ++||+|+|+++.+++|+ |. ...-...|..|.||+|||.
T Consensus 188 ~~~~~~~~~~~~p~~liln~~~gg~w~---g~-~~~~~~~p~~~~VDyVrvy 235 (235)
T cd08023 188 NTDNGGQWPFDQPFYLILNLAVGGNWP---GP-PDDDTPFPATMEVDYVRVY 235 (235)
T ss_pred ccCCcccCCCCCCcEEEEEEEEcCCCC---CC-CCCCCCCCCEEEEEEEEEC
Confidence 431 234 59999999999999998 42 1345678999999999984
No 9
>cd02177 GH16_kappa_carrageenase Kappa-carrageenase, member of glycosyl hydrolase family 16. Kappa-carrageenase is a glycosyl hydrolase family 16 (GH16) member that hydrolyzes the internal beta-1,4-linkage of kappa-carrageenans, a hydrophilic polysaccharide found in the cell wall of Rhodophyceaea, marine red algae. Carrageenans are linear chains of galactose units linked by alternating D-alpha-1,3- and D-beta-1,4-linkages that are additionally modified by a 3,6-anhydro-bridge. Depending on the position and number of sulfate ester modifications they are subdivided into kappa-, iota-, and lambda-carrageenases, kappa being modified once. Carrageenans form thermo-reversible gels widely used for industrial applications. Kappa-carrageenases exist in bacteria belonging to at least three phylogenetically distant branches, including pseudoalteromonas, planctomycetes, and baceroidetes. This domain adopts a curved beta-sandwich conformation, with a tunnel-shaped active site cavity, referred to
Probab=100.00 E-value=1.1e-31 Score=247.84 Aligned_cols=178 Identities=25% Similarity=0.310 Sum_probs=133.9
Q ss_pred CCCeEEeCCEEEEEEecCC-------------------CCeeEEecceeeEEEEEEEEecC-CCCCccEEEEEeccCCC-
Q 022492 52 PQHQRVDQGTLTVWLDSSS-------------------GSGFKSLHSYRSGYFGASIKLQP-GYTAGVITSLYLSNNQD- 110 (296)
Q Consensus 52 ~~nv~v~~g~L~Ltl~~~~-------------------Gs~i~Sk~~~~YG~~EariKlp~-g~s~G~v~Afwl~~~~~- 110 (296)
++||.+++|.|+|++.++. ++.+.|+..|+|||||||||+++ + +|+||||||+++..
T Consensus 43 ~~Nv~v~dG~L~i~a~~e~~~~~~~~~~~~~~~~~~ytSg~~~t~~~~~YG~~EaRik~~p~~--~G~wpAfW~~~~~~~ 120 (269)
T cd02177 43 EKNVVISNGILELTMRRNANNTTFWDQQQVPDGPTYFTSGIFKSYAKGTYGYYEARIKGADIF--PGVCPSFWLYSDIDY 120 (269)
T ss_pred ccceEEeCCEEEEEEEeccCCCcccccccccCCCCCEeeEEEEecCcceeeEEEEEEECCCCC--CceEeEEEEeccCCC
Confidence 5799999999999998762 24578889999999999999865 6 99999999998631
Q ss_pred -----CCCCCceEEE-EEcCCCC---CCCe----EEEeeeeeCCCCCCc---cc--cceeEEecCCCCCCCcEEEEEEEC
Q 022492 111 -----HPGNHDEVDI-EFLGTIP---GKPY----TLQTNVYIRGSGDGR---LI--GRELRFHLWFDPTQDFHHYAVLWS 172 (296)
Q Consensus 111 -----~~~~~~EIDi-E~lG~~~---g~p~----~~qtnv~~~g~~~~~---~~--gre~~~~l~~d~~~dFHtY~i~Wt 172 (296)
.||.++|||| |.+|... +++. .+|++++.++.+... .. ...+.+.+++|++++||+|+|+|+
T Consensus 121 ~~~~~gwp~~GEIDImE~~g~~~~~~~~~~~~~~~~H~~~~~~g~g~w~~~~~~~~~~~~~~~~~~d~~~~fH~y~v~W~ 200 (269)
T cd02177 121 SVANEGEVVYSEIDVVELQQFDWYHQDDIRDMDHNLHAIVKENGQGVWKRPKMYPPTEQLNYHRPFDPSKDFHTYGCNVN 200 (269)
T ss_pred CcccCCCCCCCeEEEEEEecCCccccccccccceEEEEeEecCCcccccCccccccccceEEccCCCCccCcEEEEEEEe
Confidence 3788999999 8887541 2233 355544444433210 00 112245677889999999999999
Q ss_pred cceeEEEeCCeeEEEEeCCCCCCCCCCceeEEEEEeeCC---------CCCCCCCccccCCCCCCEEEEEeEEEEe
Q 022492 173 PSELIFFVDDVPIRRYPRKSDATFPLRPMYLYGSIWDAS---------SWATEEGRYKADYKYQPFVGQYRNFKIA 239 (296)
Q Consensus 173 p~~I~fyVDG~~vrt~~~~~~~~~P~~Pm~l~lnlW~gg---------~Wat~gG~~~~d~~~~Pf~a~~~~~~v~ 239 (296)
|++|+|||||++++++.+ .+...||++.+++-... .|+ |+ ..+-+.+|..|+||+|||.
T Consensus 201 ~~~i~~yvDg~~~~~~~~----~~w~~~~~~~~~~~~~~p~~~~~~~~~~~--~~--~~~~~~fP~~m~VDyVRv~ 268 (269)
T cd02177 201 QDEIIWYVDGVEVGRKPN----KYWHRPMNVTLSLGLRKPFVKFFDNKNNA--KA--REKASDFPTSMYVDYVRVW 268 (269)
T ss_pred CCEEEEEECCEEEEEEcC----CccccccEEeeccccCcchhhhhccccCC--CC--CCccCcCCceEEEEEEEEe
Confidence 999999999999999975 36678999998874432 244 33 4456789999999999985
No 10
>cd02180 GH16_fungal_KRE6_glucanase Saccharomyces cerevisiae KRE6 and related glucanses, member of glycosyl hydrolase family 16. KRE6 is a Saccharomyces cerevisiae glucanase that participates in the synthesis of beta-1,6-glucan, a major structural component of the cell wall. It is a golgi membrane protein required for normal beta-1,6-glucan levels in the cell wall. KRE6 is closely realted to laminarinase, a glycosyl hydrolase family 16 member that hydrolyzes 1,3-beta-D-glucosidic linkages in 1,3-beta-D-glucans such as laminarins, curdlans, paramylons, and pachymans, with very limited action on mixed-link (1,3-1,4-)-beta-D-glucans.
Probab=99.97 E-value=8.1e-31 Score=244.74 Aligned_cols=191 Identities=20% Similarity=0.209 Sum_probs=133.4
Q ss_pred cCcCccCCCCeEEeCCEEEEEEecCC-------CCeeEE--ecceeeEEEEEEEEecCC-CCCccEEEEEeccCCC----
Q 022492 45 AFRNLWGPQHQRVDQGTLTVWLDSSS-------GSGFKS--LHSYRSGYFGASIKLQPG-YTAGVITSLYLSNNQD---- 110 (296)
Q Consensus 45 ~~~~~w~~~nv~v~~g~L~Ltl~~~~-------Gs~i~S--k~~~~YG~~EariKlp~g-~s~G~v~Afwl~~~~~---- 110 (296)
+....+.++|+.+++|.|+|++.+.. .+.|.| |+.|+|||||||||||.+ ...|+||||||+++..
T Consensus 33 ~e~q~Y~~~nv~v~~G~L~I~a~~~~~~~~~ytSg~i~T~~k~~f~yG~~EaR~klp~~~~~~G~WPAfWmlg~~~~~~~ 112 (295)
T cd02180 33 NDLEWYDPDAVTTINGSLRITMDQFRNHGLNFRSGMLQSWNKLCFTGGYIEASASLPGKPDVSGLWPAVWTMGNLGRPGY 112 (295)
T ss_pred CCeEEecCcCeEecCCeEEEEEEeecCCCCCEEEEEEEECCcceeeCCEEEEEEECCCCCCCCCcceeeecccccccccc
Confidence 33345678999999999999998753 256788 688999999999999963 2389999999999631
Q ss_pred ------CCCC------CceEEE-EEcCCCC-CCCeE---EEe----------------eeeeCCC--CCCccccceeE--
Q 022492 111 ------HPGN------HDEVDI-EFLGTIP-GKPYT---LQT----------------NVYIRGS--GDGRLIGRELR-- 153 (296)
Q Consensus 111 ------~~~~------~~EIDi-E~lG~~~-g~p~~---~qt----------------nv~~~g~--~~~~~~gre~~-- 153 (296)
.||. .+|||| |.+|.+. ..... +|. .+|.... .+...-+..++
T Consensus 113 ~~~~~~~WP~~~~~~~~GEIDImE~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 192 (295)
T cd02180 113 LATTEGVWPYSYDGRGAPEIDIIEAQVGNGLGIGQVSQSLQVAPFDAWYRPDYSSDFVTIYNDTTTIMNTYTGGVFQQAI 192 (295)
T ss_pred cccccCCCCcccccCCCCcEEEEeeecCCCCcCceEeeEEeeccccccccCCCCccceEEecCcccccccccCCcccccc
Confidence 3674 499999 9998543 11111 111 1111000 00000000000
Q ss_pred ---EecCC----CCCCCcEEEEEEECc-----ceeEEEeCCeeEEEEeCCCC--------CCCCCCceeEEEEEeeCCCC
Q 022492 154 ---FHLWF----DPTQDFHHYAVLWSP-----SELIFFVDDVPIRRYPRKSD--------ATFPLRPMYLYGSIWDASSW 213 (296)
Q Consensus 154 ---~~l~~----d~~~dFHtY~i~Wtp-----~~I~fyVDG~~vrt~~~~~~--------~~~P~~Pm~l~lnlW~gg~W 213 (296)
..+.. ...++||+|+|||+| ++|+|||||+++++++..+. ..+|.+||+|+||+.+||+|
T Consensus 193 ~~~~~~~~~~~~~~~~~fHtY~veW~~~~~~~~~I~wyvDg~~~~~~~~~~~~~~~~~~~~~~~~~P~ylILNlAvGg~w 272 (295)
T cd02180 193 SCVTRLNDSWYPGNGNEFQTYGFEYRPDDEDDGYITWFVDDEPTWTIYAKALGPNGNIGWRIIPEEPMYIILNLGISSNF 272 (295)
T ss_pred ccccccCCccccccCCCcEEEEEEEecCCCCCCEEEEEECCEEEEEEehHHcCCcccccccccCCCCeEEEEEEEecccc
Confidence 00111 136899999999999 89999999999999986421 24678999999999999999
Q ss_pred CCCCCccccCCCCCCEEEEEeEEEEe
Q 022492 214 ATEEGRYKADYKYQPFVGQYRNFKIA 239 (296)
Q Consensus 214 at~gG~~~~d~~~~Pf~a~~~~~~v~ 239 (296)
+ |. +.+-...|..|+||+|||+
T Consensus 273 ~---g~-~~~~~~~P~~m~VDyVRVY 294 (295)
T cd02180 273 Q---DI-DWDELQFPATMRIDYVRVY 294 (295)
T ss_pred C---CC-CcccCCCCCEEEEEEEEEE
Confidence 6 32 3455678999999999996
No 11
>cd02182 GH16_Strep_laminarinase_like Streptomyces laminarinase-like, member of glycosyl hydrolase family 16. Proteins similar to Streptomyces sioyaensis beta-1,3-glucanase (laminarinase) present in Actinomycetales as well as Peziomycotina. Laminarinases belong to glycosyl hydrolase family 16 and hydrolyze the glycosidic bond of the 1,3-beta-linked glucan, a major component of fungal and plant cell walls and the structural and storage polysaccharides (laminarin) of marine macro-algae. Members of the GH16 family have a conserved jelly roll fold with an active site channel.
Probab=99.97 E-value=2.8e-30 Score=237.36 Aligned_cols=182 Identities=13% Similarity=0.114 Sum_probs=129.5
Q ss_pred ccCCCCeEEe-CCEEEEEEecCCC-----CeeEEecc--eee----EEEEEEEEecCCC---CCccEEEEEeccCCC---
Q 022492 49 LWGPQHQRVD-QGTLTVWLDSSSG-----SGFKSLHS--YRS----GYFGASIKLQPGY---TAGVITSLYLSNNQD--- 110 (296)
Q Consensus 49 ~w~~~nv~v~-~g~L~Ltl~~~~G-----s~i~Sk~~--~~Y----G~~EariKlp~g~---s~G~v~Afwl~~~~~--- 110 (296)
.++++|+.++ +|.|+|++.++.+ +.|.|+.. +.| |+||||||+|.+. ..|+||||||++.+.
T Consensus 42 ~~~~~n~~v~~dG~L~I~a~~~~~~~ytSg~i~s~~~~~~~~~gg~~~~EaRik~p~~~~~~~~G~wPAfWll~~~~~~~ 121 (259)
T cd02182 42 TNSTANVQLSGNGTLQITPLRDGSGKWTSGRIETTRTDFAAPPGGKLRVEASIRLGDVPGSNQQGIWPAFWMLGDSYRGN 121 (259)
T ss_pred cCCCcCEEEcCCCeEEEEEEecCCCCEEEEEEEECCccccccCCCcEEEEEEEECCCCcccCCCCcCeeeeccCCCccCC
Confidence 3567899999 9999999987742 46888654 433 4999999999741 279999999999752
Q ss_pred --CCCCCceEEE-EEcCCCCCCCeEEEeeeeeCC-CCCCccccceeE-Ee-cCCCCCCCcEEEEEEECc-----ceeEEE
Q 022492 111 --HPGNHDEVDI-EFLGTIPGKPYTLQTNVYIRG-SGDGRLIGRELR-FH-LWFDPTQDFHHYAVLWSP-----SELIFF 179 (296)
Q Consensus 111 --~~~~~~EIDi-E~lG~~~g~p~~~qtnv~~~g-~~~~~~~gre~~-~~-l~~d~~~dFHtY~i~Wtp-----~~I~fy 179 (296)
.||..+|||| |..|.. ++..++ +|... .+... ++.. .. ......++||+|+++|++ ++|+||
T Consensus 122 ~~~WP~~GEIDImE~~~~~---~~~~~t-~H~~~~~~~~~---~~~~~~~~~~~~~~~~fHtY~veW~~~~~~~~~I~~y 194 (259)
T cd02182 122 GTNWPACGELDIMENVNGL---STGYGT-LHCGVAPGGPC---NEPTGIGAGTRLCDTGFHTYAVEIDRTNGDAESIRWY 194 (259)
T ss_pred CCCCCccceeeeeeccCCC---CceEEE-EeeCCCCCCCC---ccccCcccCCCCCCCCcEEEEEEEccCCCCCCEEEEE
Confidence 4788999999 999854 334444 44322 11100 1100 00 011235899999999997 999999
Q ss_pred eCCeeEEEEeCCCC---C---CCCCCceeEEEEEeeCCCCCCCCCccccCCCCCCEEEEEeEEEEe
Q 022492 180 VDDVPIRRYPRKSD---A---TFPLRPMYLYGSIWDASSWATEEGRYKADYKYQPFVGQYRNFKIA 239 (296)
Q Consensus 180 VDG~~vrt~~~~~~---~---~~P~~Pm~l~lnlW~gg~Wat~gG~~~~d~~~~Pf~a~~~~~~v~ 239 (296)
|||+++++++.... . ..|.+||+|+||++.||+|+.... ...-...|..|+||+|||.
T Consensus 195 vDG~~~~t~~~~~~~~~~~~~~~~~~p~ylIlN~avgg~w~~~~~--~~~~~~~p~~m~VDyVRVy 258 (259)
T cd02182 195 LDGVVYHTVTGARVGDETTWQALAHHPLFIILNVAVGGNWPGAPN--GNTATGSGSAMEVDYVAVY 258 (259)
T ss_pred ECCEEEEEEehhhcCCCccccCcCCCCeEEEEEEEEeCCcCCCCC--cccccCCCceEEEEEEEEe
Confidence 99999999986421 1 245699999999999999972111 1123457999999999986
No 12
>cd08024 GH16_CCF Coelomic cytolytic factor, member of glycosyl hydrolase family 16. Subgroup of glucanases of unknown function that are related to beta-GRP (beta-1,3-glucan recognition protein), but contain active site residues. Beta-GRPs are one group of pattern recognition receptors (PRRs), also referred to as biosensor proteins, that complexes with pathogen-associated beta-1,3-glucans and then transduces signals necessary for activation of an appropriate innate immune response. Beta-GRPs are present in insects and lack all catalytic residues. This subgroup contains related proteins that still contain the active site and are widely distributed in eukaryotes. Their structures adopt a jelly roll fold with a deep active site channel harboring the catalytic residues, like those of other glycosyl hydrolase family 16 members.
Probab=99.96 E-value=2.7e-28 Score=231.49 Aligned_cols=140 Identities=19% Similarity=0.255 Sum_probs=103.5
Q ss_pred eeEE--ecceeeEEEEEEEEecCCCCCccEEEEEeccCCC---CCCCCceEEE-EEcCCCCCCC-------eEEEeeeee
Q 022492 73 GFKS--LHSYRSGYFGASIKLQPGYTAGVITSLYLSNNQD---HPGNHDEVDI-EFLGTIPGKP-------YTLQTNVYI 139 (296)
Q Consensus 73 ~i~S--k~~~~YG~~EariKlp~g~s~G~v~Afwl~~~~~---~~~~~~EIDi-E~lG~~~g~p-------~~~qtnv~~ 139 (296)
.|.| ++.|+|||||||||||.| .|+||||||++.+. .||..+|||| |.+|+..... ..++..+|.
T Consensus 103 ri~T~~kf~f~YGrvE~RaKlP~G--~g~WPAfWmlp~~~~yg~WP~sGEIDImE~~Gn~~~~~~~~~~g~~~v~~tlH~ 180 (330)
T cd08024 103 RLRTKNSFSFKYGRVEVRAKLPTG--DWLWPAIWMLPRDNVYGGWPRSGEIDIMESRGNRPLYDGGEAIGINSVGSTLHW 180 (330)
T ss_pred EEEeCCccceeceEEEEEEECCCC--CccceeeeecCCccccCCCCCCCcEEEEEEeCCCcccccccccCcceEEEEEEe
Confidence 4566 588999999999999999 99999999999864 4789999999 9999864221 235555664
Q ss_pred CCCCCC--ccccceeEEecCCCCCCCcEEEEEEECcceeEEEeCCeeEEEEeCCC---------------------CCCC
Q 022492 140 RGSGDG--RLIGRELRFHLWFDPTQDFHHYAVLWSPSELIFFVDDVPIRRYPRKS---------------------DATF 196 (296)
Q Consensus 140 ~g~~~~--~~~gre~~~~l~~d~~~dFHtY~i~Wtp~~I~fyVDG~~vrt~~~~~---------------------~~~~ 196 (296)
...... .............+.+++||+|+|+|+|++|+|||||+++++++... ....
T Consensus 181 g~~~~~~~~~~~~~~~~~~~~~~~~~FHtY~veWtpd~I~fyVDG~~~~~v~~~~~~~w~~g~~~~~~~~~~w~~~~~~a 260 (330)
T cd08024 181 GPDPGQNRYTKTTGKRSDSGGDFADDFHTYGLDWTPDHIRFYVDDRLILTLDVPGQGFWEFGGFSGTPIDNPWAGGGKMA 260 (330)
T ss_pred CCCCCCCccccccceeccCCCCcccCCEEEEEEEeCCEEEEEECCEEEEEEecCCCCceeeccccccccCCcccccCcCC
Confidence 322111 00001111112345678999999999999999999999999998520 1345
Q ss_pred CC-CceeEEEEEeeCCCCC
Q 022492 197 PL-RPMYLYGSIWDASSWA 214 (296)
Q Consensus 197 P~-~Pm~l~lnlW~gg~Wa 214 (296)
|+ +|++|+||+.+||.|.
T Consensus 261 PFd~~fyliLNvAVGG~~~ 279 (330)
T cd08024 261 PFDQEFYLILNVAVGGTNG 279 (330)
T ss_pred CCCCCEEEEEEEEecCCCC
Confidence 76 9999999999999874
No 13
>cd02179 GH16_beta_GRP beta-1,3-glucan recognition protein, member of glycosyl hydrolase family 16. Beta-GRP (beta-1,3-glucan recognition protein) is one of several pattern recognition receptors (PRRs), also referred to as biosensor proteins, that complexes with pathogen-associated beta-1,3-glucans and then transduces signals necessary for activation of an appropriate innate immune response. They are present in insects and lack all catalytic residues. This subgroup also contains related proteins of unknown function that still contain the active site. Their structures adopt a jelly roll fold with a deep active site channel harboring the catalytic residues, like those of other glycosyl hydrolase family 16 members.
Probab=99.96 E-value=1.1e-27 Score=226.42 Aligned_cols=158 Identities=16% Similarity=0.151 Sum_probs=112.3
Q ss_pred CCCeEEeCCEEEEEEecCC-----------------------------------------CCeeEE--ecceeeEEEEEE
Q 022492 52 PQHQRVDQGTLTVWLDSSS-----------------------------------------GSGFKS--LHSYRSGYFGAS 88 (296)
Q Consensus 52 ~~nv~v~~g~L~Ltl~~~~-----------------------------------------Gs~i~S--k~~~~YG~~Ear 88 (296)
++|+.+++|.|.|+..+.. .+.|.| ++.|+|||||+|
T Consensus 38 ~~N~~v~dG~L~I~p~~~~~~~~~~~~~~~~~~~~~cT~~~~~~~C~~~~~~~~i~~P~~Sari~Tk~~f~f~YGrvEvR 117 (321)
T cd02179 38 PENLFVKDGNLVIEPTLLEEKFGEGFVREGLDLLERCTGQLGTTECRRDARGSSILPPVVSARINTKNSFAFKYGRVEIR 117 (321)
T ss_pred CCceEEeCCeEEEEEeecccccCccccccccccccccccccccccccccccccccCCCeeeeeEEECCcEeEeccEEEEE
Confidence 6899999999999875420 134666 478999999999
Q ss_pred EEecCCCCCccEEEEEeccCCC---CC-CCCceEEE-EEcCCCCCC---CeEEEeeeeeCCCCCCccccce---eEEecC
Q 022492 89 IKLQPGYTAGVITSLYLSNNQD---HP-GNHDEVDI-EFLGTIPGK---PYTLQTNVYIRGSGDGRLIGRE---LRFHLW 157 (296)
Q Consensus 89 iKlp~g~s~G~v~Afwl~~~~~---~~-~~~~EIDi-E~lG~~~g~---p~~~qtnv~~~g~~~~~~~gre---~~~~l~ 157 (296)
||||.| .|+||||||++.+. .| |.++|||| |.+||..-. ..+..+.+|...........+. ......
T Consensus 118 AKlP~G--dglWPAiWmlP~~~~yg~w~P~sGEIDImE~~Gn~~~~~~g~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~ 195 (321)
T cd02179 118 AKLPKG--DWIYPELLLEPVNNYYGSSDYASGQIRIAFARGNAVLRADGTDIGGKKLYGGPVLTDAEPHRSANLKTKINN 195 (321)
T ss_pred EEccCC--CCcccceeecccccccCCCCCCCCeEEEEEeCCCCccccCCceeccceEEcccccCCCcccccccccccCCC
Confidence 999999 99999999999875 24 78999999 999986310 1112222222111100000010 011112
Q ss_pred CCCCCCcEEEEEEECcceeEEEeCCeeEEEEeCCCC------------------CCCCC-CceeEEEEEeeCC
Q 022492 158 FDPTQDFHHYAVLWSPSELIFFVDDVPIRRYPRKSD------------------ATFPL-RPMYLYGSIWDAS 211 (296)
Q Consensus 158 ~d~~~dFHtY~i~Wtp~~I~fyVDG~~vrt~~~~~~------------------~~~P~-~Pm~l~lnlW~gg 211 (296)
.+.+++||+|+++|+|++|+|||||+++++++.... ...|+ +|++|+||+++||
T Consensus 196 ~~~~ddFHtY~leWtpd~I~f~VDg~~~~~~~~~~~~~~~~~~~~~~~~w~~g~~~aPFD~~FyliLNlAVGG 268 (321)
T cd02179 196 ELWSDDFHVYTLEWKPDGITLMVDGEEYGEIEPGEGGYSEAANNPAASRWLGGTVMAPFDKEFYLSLGVGVGG 268 (321)
T ss_pred CccccCcEEEEEEEeCCEEEEEECCEEEEEEecCcCccccccccccCccccccCccCCCCCCeEEEEEEEecC
Confidence 356799999999999999999999999999986321 23576 9999999999987
No 14
>COG2273 SKN1 Beta-glucanase/Beta-glucan synthetase [Carbohydrate transport and metabolism]
Probab=99.93 E-value=1.2e-24 Score=207.65 Aligned_cols=176 Identities=23% Similarity=0.370 Sum_probs=134.1
Q ss_pred ccCCCCeEEe-CCEEEEEEecCC-------CCeeEEecc--eeeEEEEEEEEecCCCCCccEEEEEeccCCC-CCCCCce
Q 022492 49 LWGPQHQRVD-QGTLTVWLDSSS-------GSGFKSLHS--YRSGYFGASIKLQPGYTAGVITSLYLSNNQD-HPGNHDE 117 (296)
Q Consensus 49 ~w~~~nv~v~-~g~L~Ltl~~~~-------Gs~i~Sk~~--~~YG~~EariKlp~g~s~G~v~Afwl~~~~~-~~~~~~E 117 (296)
.|..+++.+. +|.|+|.+++.. ++.++|..+ |+||++|+|||+|.+ .|+|+||||++... +...++|
T Consensus 75 ~w~~~~~~lt~~~~l~l~~~~~~~~~~~y~sG~l~T~~r~~~~YG~~Evrak~~~~--~G~wpafw~~~g~~~dg~wp~e 152 (355)
T COG2273 75 TWYVSNVVLTIGGTLELDIEKFKINDRDYRSGMLTTYNRFCFTYGTYEVRAKLPLV--SGLWPAFWTLTGLSRDGGWPDE 152 (355)
T ss_pred ceeecceeEeeCCeeeeeechhcccccccccceEEecCcceEeeeEEEEEeccCCC--cccceeeEeccCcccCCCCCcc
Confidence 5655666554 889999987653 467888765 999999999999988 99999999999743 2234799
Q ss_pred EEEEEcCCCCCCCeEEEeeeeeCCCCCCccccceeEEecCC-CCCCCcEEEEEEECcceeEEEeCCeeEEEEeCCCCCCC
Q 022492 118 VDIEFLGTIPGKPYTLQTNVYIRGSGDGRLIGRELRFHLWF-DPTQDFHHYAVLWSPSELIFFVDDVPIRRYPRKSDATF 196 (296)
Q Consensus 118 IDiE~lG~~~g~p~~~qtnv~~~g~~~~~~~gre~~~~l~~-d~~~dFHtY~i~Wtp~~I~fyVDG~~vrt~~~~~~~~~ 196 (296)
||||++|++.. +..+|+|.+.++.++ .+....+.+ +..++||+|+++|.++.|+|||||++++++... ...
T Consensus 153 ~d~e~lgg~~~-~~~i~t~~~~~~~~~-----~~~~~~~~~~~~~~~fhty~~~W~~~~i~Wyvdg~~~~~~~~p--~~~ 224 (355)
T COG2273 153 IDIEDLGGQST-NTVIQTNHYQGGGGG-----TSKLVDHPNPDAIDGFHTYAFLWGEDSISWYVDGAPVATATKP--DYI 224 (355)
T ss_pred eeeeeecCCCc-ccceEeeeeccCCCC-----ceecccccCCCcccccccceeeccCCeEEEEEcceEeeEEecc--ccC
Confidence 99999997653 456999999988776 233344455 778999999999999999999999999999875 345
Q ss_pred CCCceeEEEEEeeCCCCCCCCCccccCCCCCCEEEEEeEE
Q 022492 197 PLRPMYLYGSIWDASSWATEEGRYKADYKYQPFVGQYRNF 236 (296)
Q Consensus 197 P~~Pm~l~lnlW~gg~Wat~gG~~~~d~~~~Pf~a~~~~~ 236 (296)
|+.||++++++|.++.+.+.-| .......|..+.+.++
T Consensus 225 ~~~p~y~~~nl~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 262 (355)
T COG2273 225 PQIPFYVLVNLWMGGYAGGPPG--EALSAGSPLNIDYYRV 262 (355)
T ss_pred cCCcceeEEeecccCccCCCcc--ccccCCcceEeeeeee
Confidence 8999999999999987653323 2333334454444443
No 15
>PF03935 SKN1: Beta-glucan synthesis-associated protein (SKN1); InterPro: IPR005629 This family consists of the beta-glucan synthesis-associated proteins KRE6 and SKN1. Beta1,6-Glucan is a key component of the yeast cell wall, interconnecting cell wall proteins, beta1,3-glucan, and chitin. It has been postulated that the synthesis of beta1,6-glucan begins in the endoplasmic reticulum with the formation of protein-bound primer structures and that these primer structures are extended in the Golgi complex by two putative glucosyltransferases that are functionally redundant, Kre6 and Skn1. This is followed by maturation steps at the cell surface and by coupling to other cell wall macromolecules [].
Probab=99.73 E-value=1e-16 Score=157.54 Aligned_cols=194 Identities=21% Similarity=0.254 Sum_probs=127.5
Q ss_pred CCCeEEeCCEEEEEEecCC-------CCeeEE--ecceeeEEEEEEEEecCC-CCCccEEEEEeccCCC----------C
Q 022492 52 PQHQRVDQGTLTVWLDSSS-------GSGFKS--LHSYRSGYFGASIKLQPG-YTAGVITSLYLSNNQD----------H 111 (296)
Q Consensus 52 ~~nv~v~~g~L~Ltl~~~~-------Gs~i~S--k~~~~YG~~EariKlp~g-~s~G~v~Afwl~~~~~----------~ 111 (296)
++.|+.++|.|+|++++.. ++.++| |+-|+-|++|++++||-. +..|+|||||++++-. -
T Consensus 160 p~~vtt~~G~l~i~~~~~~~~~~~y~sgm~qsWNkfCftgG~~e~~~~lPg~~~~~G~WP~~W~mGNLgRagy~ast~g~ 239 (504)
T PF03935_consen 160 PDAVTTENGSLVITLDAFPNHNLNYRSGMLQSWNKFCFTGGYIEVSASLPGSPDVSGLWPAFWTMGNLGRAGYGASTDGM 239 (504)
T ss_pred CCCcEeeCCEEEEEEEeeeccceeEecchhhhhhhhhcCCcEEEEEEECCCCCcCCCcCchhhhccccCccccccccCce
Confidence 5678888999999998653 234565 678899999999999842 4689999999996521 0
Q ss_pred CC---------------------------------------------CCceEEE-EEcCCCC-CCCeEEEeeeeeC----
Q 022492 112 PG---------------------------------------------NHDEVDI-EFLGTIP-GKPYTLQTNVYIR---- 140 (296)
Q Consensus 112 ~~---------------------------------------------~~~EIDi-E~lG~~~-g~p~~~qtnv~~~---- 140 (296)
|| ...|||| |...... +.+..-|+-..+.
T Consensus 240 WPySYd~Cd~g~~~nQt~~~glS~lpgqrlsaCtc~gedhp~p~~GRgAPEIDilE~~~~~~~~~g~~SqS~Q~AP~d~~ 319 (504)
T PF03935_consen 240 WPYSYDSCDVGTTPNQTSPDGLSYLPGQRLSACTCPGEDHPGPGVGRGAPEIDILEAQVGAGPGVGVVSQSLQVAPFDIW 319 (504)
T ss_pred ecccccccCcccccCccccCccccCCCCcCcCCCCCCCcCCCCCCCCCCCceeEEeeeecccccccccccceeecccccC
Confidence 10 1249999 9754321 1111111111110
Q ss_pred ------------CCC---CCccccceeE-E----ecCCC-----CCCCcEEEEEEECcc-----eeEEEeCCeeEEEEeC
Q 022492 141 ------------GSG---DGRLIGRELR-F----HLWFD-----PTQDFHHYAVLWSPS-----ELIFFVDDVPIRRYPR 190 (296)
Q Consensus 141 ------------g~~---~~~~~gre~~-~----~l~~d-----~~~dFHtY~i~Wtp~-----~I~fyVDG~~vrt~~~ 190 (296)
... +.+.-+.-|+ + .+..+ ...+||+|++||.|. .|+|+|||+++.++..
T Consensus 320 y~~~~~~~~i~~~~~T~~N~Y~Gg~~QqAiSa~t~ln~~~Y~~~~~~~f~~YgfEy~Pg~~~~GYItW~vdg~~twti~a 399 (504)
T PF03935_consen 320 YRPDYDFYEIYNPSITQMNTYTGGVYQQAISALTQLNNDWYEEEDGGCFQTYGFEYKPGDGDDGYITWFVDGEPTWTINA 399 (504)
T ss_pred CCCCCCceEEeCCCCceeccccChhhhhhhhcCcccCccccccCCCCceEEEEEEEEeCCCCCeEEEEEECCEEEEEEEh
Confidence 000 0010000011 1 11112 237899999999764 7999999999999987
Q ss_pred CCC--------CCCCCCceeEEEEEeeCCCCCCCCCccccCCCC--CCEEEEEeEEEEeeecCCCCCCCCC
Q 022492 191 KSD--------ATFPLRPMYLYGSIWDASSWATEEGRYKADYKY--QPFVGQYRNFKIAGCTADGPSGCHP 251 (296)
Q Consensus 191 ~~~--------~~~P~~Pm~l~lnlW~gg~Wat~gG~~~~d~~~--~Pf~a~~~~~~v~~~~~~~~~~c~~ 251 (296)
... ..+|..||+|++|+....+|+ .+|+.+ +|.+|.||+|||+.=.....-.|..
T Consensus 400 ~Al~~~~~I~~R~Ip~EPMyIIlNlgmS~sf~------~vd~~~L~FP~~M~IDYVRVYQ~~~~~~vgCDP 464 (504)
T PF03935_consen 400 EALGPNPNIGQRPIPEEPMYIILNLGMSSSFG------YVDWNHLCFPATMRIDYVRVYQPEDAINVGCDP 464 (504)
T ss_pred hhcCCCCCcCccccCcCCceeeeccccccccC------ccccccccccceEEEeEEEEeccCCCCeeeeCC
Confidence 432 358899999999999999996 567654 8999999999997433222367854
No 16
>PF06955 XET_C: Xyloglucan endo-transglycosylase (XET) C-terminus; InterPro: IPR010713 This entry represents the C terminus (approximately 60 residues) of plant xyloglucan endo-transglycosylase (XET). Xyloglucan is the predominant hemicellulose in the cell walls of most dicotyledons. With cellulose, it forms a network that strengthens the cell wall. XET catalyses the splitting of xyloglucan chains and the linking of the newly generated reducing end to the non-reducing end of another xyloglucan chain, thereby loosening the cell wall []. ; GO: 0016762 xyloglucan:xyloglucosyl transferase activity, 0006073 cellular glucan metabolic process, 0005618 cell wall, 0048046 apoplast; PDB: 1UMZ_A 1UN1_B 2VH9_B 2UWC_A 2UWB_B 2UWA_C.
Probab=99.73 E-value=2e-18 Score=120.93 Aligned_cols=35 Identities=51% Similarity=1.038 Sum_probs=30.1
Q ss_pred CCHHHHHHHHHHhhcCEEEecccCCCCCCCC-CCCC
Q 022492 262 LSQQQVAAMQWVQRNYLVYNYCYDPKRDHTE-IPEC 296 (296)
Q Consensus 262 l~~~~~~~~~~~~~~~~~y~yc~d~~r~~~~-~~ec 296 (296)
|+++|+++|+|||+||||||||+|++|||.. |+||
T Consensus 16 L~~~q~~~m~wvr~~ymiYdYC~D~~Rfp~~~P~EC 51 (51)
T PF06955_consen 16 LSAKQRRQMRWVRRNYMIYDYCTDTKRFPNPLPPEC 51 (51)
T ss_dssp --HHHHHHHHHHHHHCEEEEGGG-TTT-SGCGSTTH
T ss_pred CCHHHHHHHHHHHHcCeEecccCCCCcCCCCCCCCC
Confidence 9999999999999999999999999999975 9999
No 17
>cd02181 GH16_fungal_Lam16A_glucanase fungal 1,3(4)-beta-D-glucanases, similar to Phanerochaete chrysosporium laminarinase 16A. Group of fungal 1,3(4)-beta-D-glucanases, similar to Phanerochaete chrysosporium laminarinase 16A. Lam16A belongs to the 'nonspecific' 1,3(4)-beta-glucanase subfamily, although beta-1,6 branching and beta-1,4 bonds specifically define where Lam16A hydrolyzes its substrates, like curdlan (beta-1,3-glucan), lichenin (beta-1,3-1,4-mixed linkage glucan), and laminarin (beta-1,6-branched-1,3-glucan).
Probab=99.56 E-value=4.9e-14 Score=130.99 Aligned_cols=153 Identities=19% Similarity=0.268 Sum_probs=103.1
Q ss_pred CCeEEeCCEEEEEEecCCC---------CeeEEecceeeEEEEEEE-EecCCCCCccEEEEEeccCCCCCCCCceEEE-E
Q 022492 53 QHQRVDQGTLTVWLDSSSG---------SGFKSLHSYRSGYFGASI-KLQPGYTAGVITSLYLSNNQDHPGNHDEVDI-E 121 (296)
Q Consensus 53 ~nv~v~~g~L~Ltl~~~~G---------s~i~Sk~~~~YG~~Eari-Klp~g~s~G~v~Afwl~~~~~~~~~~~EIDi-E 121 (296)
..+.+.+|.|.|.+++.+. +.|.||..|.+|++|+|+ |||.| .|+||||||++. .||..+|||| |
T Consensus 42 gL~~v~~g~l~i~vd~t~~~~~~~gr~S~ri~sk~~f~~g~~~~~~~~~P~g--~G~WPAfW~~g~--~WP~~GEIDImE 117 (293)
T cd02181 42 GLAYVNSGNVYLGVDSTTTLPSGAGRNSVRIESKKTYNTGLFIADIAHMPGG--CGTWPAFWTVGP--NWPNGGEIDIIE 117 (293)
T ss_pred CCeEeeCCeEEEEEeceeccCCCCCceEEEEEEeceeecceEEEEhhhCCCC--CCccchhhhcCC--CCCCCCcEEEEe
Confidence 3466778999999987641 368899999999999997 99998 999999999988 5899999999 9
Q ss_pred EcCCCCCCCeEEEeeeeeCCCC---------C----Ccc-------cc------ceeEEecCCCCCCCcEEEEEEECcce
Q 022492 122 FLGTIPGKPYTLQTNVYIRGSG---------D----GRL-------IG------RELRFHLWFDPTQDFHHYAVLWSPSE 175 (296)
Q Consensus 122 ~lG~~~g~p~~~qtnv~~~g~~---------~----~~~-------~g------re~~~~l~~d~~~dFHtY~i~Wtp~~ 175 (296)
.++... ..+..+|+.+.. + ... .| ....+-..|+ ..+=-+|++||+.+.
T Consensus 118 ~vn~~~----~n~~tlHt~~gC~i~~~~~~tg~~~~~nC~~~~~~n~GC~v~~~~~~syG~~FN-~~GGGvyA~ew~~~~ 192 (293)
T cd02181 118 GVNLQT----SNQMTLHTGPGCTISNSGSFTGTVTTTNCDVNQNGNAGCGVTSTSTNSYGAGFN-AAGGGVYAMEWTSDG 192 (293)
T ss_pred ccCCCC----ceEEEEecCCCEEcCCCCCccCcccCCCcCCCCCCCCCceeecCCCCccccccc-cCCCcEEEEEEccCc
Confidence 998543 233344432110 0 000 00 0001222333 345589999999999
Q ss_pred eEEEe---CCeeEEEEeCC-CC-------CCCCC---------CceeEEEEEeeCCCCC
Q 022492 176 LIFFV---DDVPIRRYPRK-SD-------ATFPL---------RPMYLYGSIWDASSWA 214 (296)
Q Consensus 176 I~fyV---DG~~vrt~~~~-~~-------~~~P~---------~Pm~l~lnlW~gg~Wa 214 (296)
|+.+. +.+|--..... ++ ..||. ++++|++++=.-|+||
T Consensus 193 I~vWff~R~~iP~di~~~~pdPs~WG~P~A~f~~~~Cdi~~~F~~~~iVfn~tfCGdwA 251 (293)
T cd02181 193 IKVWFFPRGSIPADITSGSPDPSTWGTPAASFPGSSCDIDSFFKDQRIVFDTTFCGDWA 251 (293)
T ss_pred EEEEEecCCCCCcccccCCCCCcccCcccccCCCCCCChhHhcccCEEEEEeecccccc
Confidence 87665 22222111111 11 44653 8999999999999999
No 18
>PF06439 DUF1080: Domain of Unknown Function (DUF1080); InterPro: IPR010496 This is a family of proteins of unknown function.; PDB: 3IMM_B 3NMB_A 3S5Q_A 3OSD_A 3HBK_A 3H3L_A 3U1X_A.
Probab=94.26 E-value=0.68 Score=39.42 Aligned_cols=124 Identities=15% Similarity=0.171 Sum_probs=65.3
Q ss_pred CeEEeCCEEEEEEe--cCCCCeeEEecceeeEEEEEEEEecCCCCCccEEEEEeccC--C--CCCCCCceEEEEEcCCCC
Q 022492 54 HQRVDQGTLTVWLD--SSSGSGFKSLHSYRSGYFGASIKLQPGYTAGVITSLYLSNN--Q--DHPGNHDEVDIEFLGTIP 127 (296)
Q Consensus 54 nv~v~~g~L~Ltl~--~~~Gs~i~Sk~~~~YG~~EariKlp~g~s~G~v~Afwl~~~--~--~~~~~~~EIDiE~lG~~~ 127 (296)
...+++|.|+ ... ...++-+.++..|.=..+++.+|+.++ | -+++++-.. . ..+...-|+.|.--+...
T Consensus 25 ~~~v~dG~l~-~~~~~~~~~~~l~~~~~~~df~l~~d~k~~~~---~-~sGi~~r~~~~~~~~~~~~gy~~~i~~~~~~~ 99 (185)
T PF06439_consen 25 GWSVKDGVLV-SNGSSGSGGGYLYTDKKFSDFELEVDFKITPG---G-NSGIFFRAQSPGDGQDWNNGYEFQIDNSGGGT 99 (185)
T ss_dssp TEEEETTEEE--GGGGESSS--EEESSEBSSEEEEEEEEE-TT-----EEEEEEEESSECCSSGGGTSEEEEEE-TTTCS
T ss_pred CcEeeCCEEE-ecccCCCCcceEEECCccccEEEEEEEEECCC---C-CeEEEEEeccccCCCCcceEEEEEEECCCCcc
Confidence 3478899888 111 112456788887777789999998543 2 344444443 1 112344566653221110
Q ss_pred CCCeEEEeeeeeCCCCCCccc-cceeE-EecCCCCCCCcEEEEEEECcceeEEEeCCeeEEEEeCC
Q 022492 128 GKPYTLQTNVYIRGSGDGRLI-GRELR-FHLWFDPTQDFHHYAVLWSPSELIFFVDDVPIRRYPRK 191 (296)
Q Consensus 128 g~p~~~qtnv~~~g~~~~~~~-gre~~-~~l~~d~~~dFHtY~i~Wtp~~I~fyVDG~~vrt~~~~ 191 (296)
......+.-+.. .+... ......+..+||++.|.-..++|+.+|||++|-+++..
T Consensus 100 ---------~~~~~~G~~~~~~~~~~~~~~~~~~~~~~W~~~~I~~~g~~i~v~vnG~~v~~~~d~ 156 (185)
T PF06439_consen 100 ---------GLPNSTGSLYDEPPWQLEPSVNVAIPPGEWNTVRIVVKGNRITVWVNGKPVADFTDP 156 (185)
T ss_dssp ---------TTTTSTTSBTTTB-TCB-SSS--S--TTSEEEEEEEEETTEEEEEETTEEEEEEETT
T ss_pred ---------CCCCccceEEEeccccccccccccCCCCceEEEEEEEECCEEEEEECCEEEEEEEcC
Confidence 000011110000 00000 00112346899999999999999999999999999864
No 19
>PF13385 Laminin_G_3: Concanavalin A-like lectin/glucanases superfamily; PDB: 4DQA_A 1N1Y_A 1MZ6_A 1MZ5_A 1N1S_A 2A75_A 1WCS_A 1N1T_A 1N1V_A 2FHR_A ....
Probab=93.95 E-value=1.5 Score=35.00 Aligned_cols=64 Identities=19% Similarity=0.297 Sum_probs=40.1
Q ss_pred CCCcEEEEEEECcceeEEEeCCeeEEEEeCCCCC-CCCCCceeEEEEEeeCCCCCCCCCccccCCCCCCEEEEEeEEEEe
Q 022492 161 TQDFHHYAVLWSPSELIFFVDDVPIRRYPRKSDA-TFPLRPMYLYGSIWDASSWATEEGRYKADYKYQPFVGQYRNFKIA 239 (296)
Q Consensus 161 ~~dFHtY~i~Wtp~~I~fyVDG~~vrt~~~~~~~-~~P~~Pm~l~lnlW~gg~Wat~gG~~~~d~~~~Pf~a~~~~~~v~ 239 (296)
...||..++.|....+++||||+++.+....... ..+..++. .|++. ....+|...++.++|.
T Consensus 84 ~~~W~~l~~~~~~~~~~lyvnG~~~~~~~~~~~~~~~~~~~~~------iG~~~----------~~~~~~~g~i~~~~i~ 147 (157)
T PF13385_consen 84 DNKWHHLALTYDGSTVTLYVNGELVGSSTIPSNISLNSNGPLF------IGGSG----------GGSSPFNGYIDDLRIY 147 (157)
T ss_dssp TT-EEEEEEEEETTEEEEEETTEEETTCTEESSSSTTSCCEEE------ESS-S----------TT--B-EEEEEEEEEE
T ss_pred CCCEEEEEEEEECCeEEEEECCEEEEeEeccCCcCCCCcceEE------EeecC----------CCCCceEEEEEEEEEE
Confidence 5899999999999999999999998775442110 11112221 12211 2267899999999997
Q ss_pred e
Q 022492 240 G 240 (296)
Q Consensus 240 ~ 240 (296)
.
T Consensus 148 ~ 148 (157)
T PF13385_consen 148 N 148 (157)
T ss_dssp S
T ss_pred C
Confidence 4
No 20
>PF09264 Sial-lect-inser: Vibrio cholerae sialidase, lectin insertion; InterPro: IPR015344 This domain is predominantly found in Vibrio cholerae sialidase, and adopt a beta sandwich structure consisting of 12-14 strands arranged in two beta-sheets. It binds to lectins with high affinity helping to target the protein to sialic acid-rich environments, thereby enhancing the catalytic efficiency of the enzyme []. ; PDB: 1W0P_A 1W0O_A 1KIT_A 2W68_B.
Probab=89.86 E-value=1.5 Score=38.63 Aligned_cols=28 Identities=25% Similarity=0.706 Sum_probs=24.7
Q ss_pred CCcEEEEEEECc--ceeEEEeCCeeEEEEe
Q 022492 162 QDFHHYAVLWSP--SELIFFVDDVPIRRYP 189 (296)
Q Consensus 162 ~dFHtY~i~Wtp--~~I~fyVDG~~vrt~~ 189 (296)
.+||.|.|.-.| ..-.|||||++|++..
T Consensus 92 ~gyH~Y~i~~~p~~~tASfy~DG~lI~tw~ 121 (198)
T PF09264_consen 92 HGYHKYEIVFSPLTNTASFYFDGTLIATWS 121 (198)
T ss_dssp CSEEEEEEEEETTTTEEEEEETTEEEEEE-
T ss_pred cceeEEEEEecCCCCceEEEECCEEEeecc
Confidence 579999999977 8899999999999853
No 21
>smart00560 LamGL LamG-like jellyroll fold domain.
Probab=85.33 E-value=7.4 Score=31.69 Aligned_cols=68 Identities=16% Similarity=0.197 Sum_probs=43.8
Q ss_pred CCCCcEEEEEEECc--ceeEEEeCCeeEEEEeCCCCCCCC-CCceeEEEEEeeCCCCCCCCCccccCCCCCCEEEEEeEE
Q 022492 160 PTQDFHHYAVLWSP--SELIFFVDDVPIRRYPRKSDATFP-LRPMYLYGSIWDASSWATEEGRYKADYKYQPFVGQYRNF 236 (296)
Q Consensus 160 ~~~dFHtY~i~Wtp--~~I~fyVDG~~vrt~~~~~~~~~P-~~Pm~l~lnlW~gg~Wat~gG~~~~d~~~~Pf~a~~~~~ 236 (296)
+...||...+.++. .+|++||||+++.+.... ..+ ..|+.+-..... ++ ....+|.-.++.|
T Consensus 59 ~~~~W~hva~v~d~~~g~~~lYvnG~~~~~~~~~---~~~~~~~~~iG~~~~~-------~~-----~~~~~f~G~Idev 123 (133)
T smart00560 59 WIGVWVHLAGVYDGGAGKLSLYVNGVEVATSETQ---PSPSSGNLPQGGRILL-------GG-----AGGENFSGRLDEV 123 (133)
T ss_pred CCCCEEEEEEEEECCCCeEEEEECCEEccccccC---CcccCCceEEeeeccC-------CC-----CCCCCceEEeeEE
Confidence 34789999999987 789999999998764431 111 233332211111 11 1235799999999
Q ss_pred EEeeec
Q 022492 237 KIAGCT 242 (296)
Q Consensus 237 ~v~~~~ 242 (296)
+|.++.
T Consensus 124 riy~~a 129 (133)
T smart00560 124 RVYNRA 129 (133)
T ss_pred EEeccc
Confidence 998764
No 22
>PF02973 Sialidase: Sialidase, N-terminal domain; InterPro: IPR004124 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Sialidases (GH33 from CAZY) hydrolyse alpha-(2->3)-, alpha-(2->6)-, alpha-(2->8)-glycosidic linkages of terminal sialic residues in oligosaccharides, glycoproteins, glycolipids, colominic acid and synthetic substrates. Sialidases may act as pathogenic factors in microbial infections []. The 1.8 A structure of trans-sialidase from leech (Macrobdella decora, Q27701 from SWISSPROT) in complex with 2-deoxy-2, 3-didehydro-NeuAc was solved. The refined model comprising residues 81-769 has a catalytic beta-propeller domain, a N-terminal lectin-like domain and an irregular beta-stranded domain inserted into the catalytic domain [].; GO: 0004308 exo-alpha-sialidase activity, 0005975 carbohydrate metabolic process; PDB: 2JKB_A 2VW2_A 2VW0_A 2VW1_A 2V73_B 2V72_A 1SLI_A 1SLL_A 2SLI_A 4SLI_A ....
Probab=84.55 E-value=28 Score=30.84 Aligned_cols=134 Identities=19% Similarity=0.226 Sum_probs=70.6
Q ss_pred cceeeEEEEEEEEecCCCCCccEEEEEeccCCCCC-------CCCceEEEEEcCCCCCCCeEEEeeeeeCCCCCCccccc
Q 022492 78 HSYRSGYFGASIKLQPGYTAGVITSLYLSNNQDHP-------GNHDEVDIEFLGTIPGKPYTLQTNVYIRGSGDGRLIGR 150 (296)
Q Consensus 78 ~~~~YG~~EariKlp~g~s~G~v~Afwl~~~~~~~-------~~~~EIDiE~lG~~~g~p~~~qtnv~~~g~~~~~~~gr 150 (296)
..+.-|.+-++.|.... . -+-|++-.+++... -..+++=+|+.+......+...+.+-..+.
T Consensus 30 k~L~~gTI~i~Fk~~~~--~-~~~sLfsiSn~~~~n~YF~lyv~~~~~G~E~R~~~~~~~y~~~~~~~v~~~-------- 98 (190)
T PF02973_consen 30 KKLEEGTIVIRFKSDSN--S-GIQSLFSISNSTKGNEYFSLYVSNNKLGFELRDTKGNQNYNFSRPAKVRGG-------- 98 (190)
T ss_dssp CT-SSEEEEEEEEESS---S-SEEEEEEEE-TSTTSEEEEEEEETTEEEEEEEETTTTCEEEEEESSE--SE--------
T ss_pred hcccccEEEEEEecCCC--c-ceeEEEEecCCCCccceEEEEEECCEEEEEEecCCCCcccccccccEeccc--------
Confidence 44566777777777443 3 34556666554210 012277778887664433333332111110
Q ss_pred eeEEecCCCCCCCcEEEEEEEC--cceeEEEeCCeeEEEEeCCCC---CCCCCCceeEEEEEeeCCCCCCCCCccccCCC
Q 022492 151 ELRFHLWFDPTQDFHHYAVLWS--PSELIFFVDDVPIRRYPRKSD---ATFPLRPMYLYGSIWDASSWATEEGRYKADYK 225 (296)
Q Consensus 151 e~~~~l~~d~~~dFHtY~i~Wt--p~~I~fyVDG~~vrt~~~~~~---~~~P~~Pm~l~lnlW~gg~Wat~gG~~~~d~~ 225 (296)
+ + ....||+=++.=. ..+.++|+||..+.++..... ...|. +=.+.+ ||..+..-.
T Consensus 99 --~---~--~~~~~~tva~~ad~~~~~ykly~NG~~v~~~~~~~~~Fis~i~~-~n~~~i-----------G~t~R~g~~ 159 (190)
T PF02973_consen 99 --Y---K--NNVTFNTVAFVADSKNKGYKLYVNGELVSTLSSKSGNFISDIPG-LNSVQI-----------GGTNRAGSN 159 (190)
T ss_dssp --E---T--TEES-EEEEEEEETTTTEEEEEETTCEEEEEEECTSS-GGGSTT---EEEE-----------SSEEETTEE
T ss_pred --c---c--CCceEEEEEEEEecCCCeEEEEeCCeeEEEeccccccHhhcCcC-CceEEE-----------cceEeCCCc
Confidence 0 0 1246788877775 677999999988888765432 22231 112222 333333345
Q ss_pred CCCEEEEEeEEEEeee
Q 022492 226 YQPFVGQYRNFKIAGC 241 (296)
Q Consensus 226 ~~Pf~a~~~~~~v~~~ 241 (296)
.-||.-.+++++|+++
T Consensus 160 ~y~f~G~I~~l~iYn~ 175 (190)
T PF02973_consen 160 AYPFNGTIDNLKIYNR 175 (190)
T ss_dssp ES--EEEEEEEEEESS
T ss_pred eecccceEEEEEEEcC
Confidence 6899999999999865
No 23
>smart00210 TSPN Thrombospondin N-terminal -like domains. Heparin-binding and cell adhesion domain of thrombospondin
Probab=82.46 E-value=27 Score=30.14 Aligned_cols=29 Identities=28% Similarity=0.339 Sum_probs=26.6
Q ss_pred CCCcEEEEEEECcceeEEEeCCeeEEEEe
Q 022492 161 TQDFHHYAVLWSPSELIFFVDDVPIRRYP 189 (296)
Q Consensus 161 ~~dFHtY~i~Wtp~~I~fyVDG~~vrt~~ 189 (296)
...||..++.+..+.+++|||++.+.+..
T Consensus 116 dg~WH~lal~V~~~~v~LyvDC~~~~~~~ 144 (184)
T smart00210 116 DGQWHKLALSVSGSSATLYVDCNEIDSRP 144 (184)
T ss_pred cCCceEEEEEEeCCEEEEEECCcccccee
Confidence 57899999999999999999999998764
No 24
>cd00152 PTX Pentraxins are plasma proteins characterized by their pentameric discoid assembly and their Ca2+ dependent ligand binding, such as Serum amyloid P component (SAP) and C-reactive Protein (CRP), which are cytokine-inducible acute-phase proteins implicated in innate immunity. CRP binds to ligands containing phosphocholine, SAP binds to amyloid fibrils, DNA, chromatin, fibronectin, C4-binding proteins and glycosaminoglycans. "Long" pentraxins have N-terminal extensions to the common pentraxin domain; one group, the neuronal pentraxins, may be involved in synapse formation and remodeling, and they may also be able to form heteromultimers.
Probab=79.98 E-value=21 Score=31.30 Aligned_cols=73 Identities=19% Similarity=0.191 Sum_probs=43.5
Q ss_pred CCCCcEEEEEEEC--cceeEEEeCCeeEEEEeCCCCCCCCCCceeEEEEEeeCCCCCCCCCccccCCCCCCEEEEEeEEE
Q 022492 160 PTQDFHHYAVLWS--PSELIFFVDDVPIRRYPRKSDATFPLRPMYLYGSIWDASSWATEEGRYKADYKYQPFVGQYRNFK 237 (296)
Q Consensus 160 ~~~dFHtY~i~Wt--p~~I~fyVDG~~vrt~~~~~~~~~P~~Pm~l~lnlW~gg~Wat~gG~~~~d~~~~Pf~a~~~~~~ 237 (296)
....||...+.|+ ...+.+||||+++.+-.-.....++. ...|.|+.-. -.-|| ..+ ....|.-.++.|+
T Consensus 88 ~~g~W~hv~~t~d~~~g~~~lyvnG~~~~~~~~~~~~~~~~-~g~l~lG~~q----~~~gg--~~~-~~~~f~G~I~~v~ 159 (201)
T cd00152 88 SDGAWHHICVTWESTSGIAELWVNGKLSVRKSLKKGYTVGP-GGSIILGQEQ----DSYGG--GFD-ATQSFVGEISDVN 159 (201)
T ss_pred CCCCEEEEEEEEECCCCcEEEEECCEEeccccccCCCEECC-CCeEEEeecc----cCCCC--CCC-CCcceEEEEceeE
Confidence 4678999999997 45699999999986443111112222 2234444211 11134 222 2356889999999
Q ss_pred Eee
Q 022492 238 IAG 240 (296)
Q Consensus 238 v~~ 240 (296)
|-+
T Consensus 160 iw~ 162 (201)
T cd00152 160 MWD 162 (201)
T ss_pred EEc
Confidence 864
No 25
>smart00159 PTX Pentraxin / C-reactive protein / pentaxin family. This family form a doscoid pentameric structure. Human serum amyloid P demonstrates calcium-mediated ligand-binding.
Probab=79.15 E-value=24 Score=31.19 Aligned_cols=73 Identities=21% Similarity=0.266 Sum_probs=42.8
Q ss_pred CCCCcEEEEEEEC--cceeEEEeCCeeEEEEeCCCC-CCCCCCceeEEEEEeeCCCCCCCCCccccCCCCCCEEEEEeEE
Q 022492 160 PTQDFHHYAVLWS--PSELIFFVDDVPIRRYPRKSD-ATFPLRPMYLYGSIWDASSWATEEGRYKADYKYQPFVGQYRNF 236 (296)
Q Consensus 160 ~~~dFHtY~i~Wt--p~~I~fyVDG~~vrt~~~~~~-~~~P~~Pm~l~lnlW~gg~Wat~gG~~~~d~~~~Pf~a~~~~~ 236 (296)
....||...+.|+ ...+.+||||+++.. ..... ..++ ..-.|.|+.- -+.+ || ..+ ....|.-.++.|
T Consensus 88 ~~g~W~hvc~tw~~~~g~~~lyvnG~~~~~-~~~~~g~~i~-~~G~lvlGq~-qd~~---gg--~f~-~~~~f~G~i~~v 158 (206)
T smart00159 88 SDGKWHHICTTWESSSGIAELWVDGKPGVR-KGLAKGYTVK-PGGSIILGQE-QDSY---GG--GFD-ATQSFVGEIGDL 158 (206)
T ss_pred cCCceEEEEEEEECCCCcEEEEECCEEccc-ccccCCcEEC-CCCEEEEEec-ccCC---CC--CCC-CCcceeEEEeee
Confidence 3578999999996 456999999999721 11110 1122 2233455442 1222 44 222 234688999999
Q ss_pred EEeee
Q 022492 237 KIAGC 241 (296)
Q Consensus 237 ~v~~~ 241 (296)
+|-+.
T Consensus 159 ~iw~~ 163 (206)
T smart00159 159 NMWDS 163 (206)
T ss_pred EEecc
Confidence 88643
No 26
>PF10287 DUF2401: Putative TOS1-like glycosyl hydrolase (DUF2401); InterPro: IPR018805 This entry represents a family of proteins conserved primarily in fungi. One member is annotated putatively as OPEL, a house-keeping protein, but this could not be confirmed. It contains 5 highly conserved cysteines two of which form a characteristic CGC sequence motif.
Probab=77.28 E-value=14 Score=33.87 Aligned_cols=84 Identities=23% Similarity=0.224 Sum_probs=49.7
Q ss_pred EEEEEEEecCCC-----CCccEEEEEeccCCC-----C-------C-CCCceEEE-EEcCCCCCCCeEEEeeeee-CCCC
Q 022492 84 YFGASIKLQPGY-----TAGVITSLYLSNNQD-----H-------P-GNHDEVDI-EFLGTIPGKPYTLQTNVYI-RGSG 143 (296)
Q Consensus 84 ~~EariKlp~g~-----s~G~v~Afwl~~~~~-----~-------~-~~~~EIDi-E~lG~~~g~p~~~qtnv~~-~g~~ 143 (296)
-|-.+++||... ...=.||+||++... + | .-.+|+|| |.|.... . .+.+.+|. .|..
T Consensus 102 ~Flfef~MP~~~~~~~~~~~DmPAIWlLNA~IpRT~QY~~~~CSCW~sGCGEfDifEVl~~g~--~-k~~St~H~~qG~~ 178 (235)
T PF10287_consen 102 MFLFEFSMPHETDGGSGFNYDMPAIWLLNAQIPRTSQYGNAGCSCWKSGCGEFDIFEVLNSGD--D-KLKSTFHDYQGTD 178 (235)
T ss_pred EEEEEEECCCCcCCCCCCCCCcChhHhccccCcchhhcCCCCCCccCCCcccceeeeeccCCC--c-eeEEEEecccCcc
Confidence 367788888731 134579999998742 2 3 35899999 9997543 2 56666665 3321
Q ss_pred CCc-cccceeEEecCC-CCCCCcEEEEEEECcc
Q 022492 144 DGR-LIGRELRFHLWF-DPTQDFHHYAVLWSPS 174 (296)
Q Consensus 144 ~~~-~~gre~~~~l~~-d~~~dFHtY~i~Wtp~ 174 (296)
+.. ..|.. . .| .|++..-+++|.++.+
T Consensus 179 ~~~~g~G~~-~---yf~RPt~~~~k~aVifd~~ 207 (235)
T PF10287_consen 179 DINGGGGSS-D---YFKRPTSGTMKVAVIFDSS 207 (235)
T ss_pred ccCCCCCCC-C---cccCCCCCCeEEEEEEcCC
Confidence 100 00111 1 12 3667888888888543
No 27
>cd00110 LamG Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of purposes including signal transduction via cell-surface steroid receptors, adhesion, migration and differentiation through mediation of cell adhesion molecules.
Probab=71.67 E-value=50 Score=26.40 Aligned_cols=72 Identities=15% Similarity=0.141 Sum_probs=40.3
Q ss_pred CCCcEEEEEEECcceeEEEeCCeeEEEEeCCCCCCCCCCceeEEEEEeeCCCCCCCCCccccCCCCCCEEEEEeEEEE
Q 022492 161 TQDFHHYAVLWSPSELIFFVDDVPIRRYPRKSDATFPLRPMYLYGSIWDASSWATEEGRYKADYKYQPFVGQYRNFKI 238 (296)
Q Consensus 161 ~~dFHtY~i~Wtp~~I~fyVDG~~vrt~~~~~~~~~P~~Pm~l~lnlW~gg~Wat~gG~~~~d~~~~Pf~a~~~~~~v 238 (296)
...||...|.+..+.++++|||..+.+..... ... -+.....+..||......+ +......+|+--+++|+|
T Consensus 79 dg~Wh~v~i~~~~~~~~l~VD~~~~~~~~~~~-~~~---~~~~~~~~~iGg~~~~~~~--~~~~~~~~F~Gci~~v~i 150 (151)
T cd00110 79 DGQWHSVSVERNGRSVTLSVDGERVVESGSPG-GSA---LLNLDGPLYLGGLPEDLKS--PGLPVSPGFVGCIRDLKV 150 (151)
T ss_pred CCCEEEEEEEECCCEEEEEECCccEEeeeCCC-Cce---eecCCCCeEEcCCCCchhc--ccccccCCCceEeeEeEe
Confidence 46899999999999999999998543333211 100 1122223444443221111 112245677777777765
No 28
>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB10 occurs exclusively in the axoneme of sperm cells and may have a cytoskeletal role.
Probab=57.32 E-value=26 Score=26.95 Aligned_cols=40 Identities=18% Similarity=0.243 Sum_probs=27.4
Q ss_pred eEEeCCEEEEEEecCCCCeeEEecceeeEEEEEEEEecCC
Q 022492 55 QRVDQGTLTVWLDSSSGSGFKSLHSYRSGYFGASIKLQPG 94 (296)
Q Consensus 55 v~v~~g~L~Ltl~~~~Gs~i~Sk~~~~YG~~EariKlp~g 94 (296)
|++.++.|+|+..+..-..-.....+.||.|+=++.||.+
T Consensus 26 V~v~~~~L~I~ger~~~~e~~~~~er~~g~F~R~f~LP~~ 65 (87)
T cd06482 26 VKVKDGKVQVSAERENRYDCLGSKKYSYMNICKEFSLPPG 65 (87)
T ss_pred EEEECCEEEEEEEEecccccCCccEEEEEEEEEEEECCCC
Confidence 4556999999997643111001235799999999999964
No 29
>smart00282 LamG Laminin G domain.
Probab=54.21 E-value=59 Score=25.82 Aligned_cols=28 Identities=18% Similarity=0.084 Sum_probs=23.8
Q ss_pred CCCcEEEEEEECcceeEEEeCCeeEEEE
Q 022492 161 TQDFHHYAVLWSPSELIFFVDDVPIRRY 188 (296)
Q Consensus 161 ~~dFHtY~i~Wtp~~I~fyVDG~~vrt~ 188 (296)
...||.-.|.-....++.+|||......
T Consensus 61 dg~WH~v~i~~~~~~~~l~VD~~~~~~~ 88 (135)
T smart00282 61 DGQWHRVAVERNGRRVTLSVDGENPVSG 88 (135)
T ss_pred CCCEEEEEEEEeCCEEEEEECCCccccE
Confidence 4689999999999999999999765443
No 30
>PF02210 Laminin_G_2: Laminin G domain; InterPro: IPR012680 Laminins are large heterotrimeric glycoproteins involved in basement membrane function []. The laminin globular (G) domain can be found in one to several copies in various laminin family members, including a large number of extracellular proteins. The C terminus of the laminin alpha chain contains a tandem repeat of five laminin G domains, which are critical for heparin-binding and cell attachment activity []. Laminin alpha4 is distributed in a variety of tissues including peripheral nerves, dorsal root ganglion, skeletal muscle and capillaries; in the neuromuscular junction, it is required for synaptic specialisation []. The structure of the laminin-G domain has been predicted to resemble that of pentraxin []. Laminin G domains can vary in their function, and a variety of binding functions have been ascribed to different LamG modules. For example, the laminin alpha1 and alpha2 chains each have five C-teminal laminin G domains, where only domains LG4 and LG5 contain binding sites for heparin, sulphatides and the cell surface receptor dystroglycan []. Laminin G-containing proteins appear to have a wide variety of roles in cell adhesion, signalling, migration, assembly and differentiation. This entry represents one subtype of laminin G domains, which is sometimes found in association with thrombospondin-type laminin G domains (IPR012679 from INTERPRO).; PDB: 3POY_A 3QCW_B 3R05_B 3ASI_A 3MW4_B 3MW3_A 1QU0_D 1DYK_A 1OKQ_A 3SH4_A ....
Probab=50.71 E-value=1.1e+02 Score=23.35 Aligned_cols=75 Identities=15% Similarity=0.230 Sum_probs=48.2
Q ss_pred CCCcEEEEEEECcceeEEEeCCeeEEEEeCCCCCCCCCCceeEEEEEeeCCCCCCCCCccccCCCCCCEEEEEeEEEEee
Q 022492 161 TQDFHHYAVLWSPSELIFFVDDVPIRRYPRKSDATFPLRPMYLYGSIWDASSWATEEGRYKADYKYQPFVGQYRNFKIAG 240 (296)
Q Consensus 161 ~~dFHtY~i~Wtp~~I~fyVDG~~vrt~~~~~~~~~P~~Pm~l~lnlW~gg~Wat~gG~~~~d~~~~Pf~a~~~~~~v~~ 240 (296)
...||.-.|.=....++..||+........... ...-+...-.++.||....... ...-....|.--+++++|.+
T Consensus 53 dg~wh~v~i~~~~~~~~l~Vd~~~~~~~~~~~~---~~~~~~~~~~l~iGg~~~~~~~--~~~~~~~~f~Gci~~l~vng 127 (128)
T PF02210_consen 53 DGQWHKVSISRDGNRVTLTVDGQSVSSESLPSS---SSDSLDPDGSLYIGGLPESNQP--SGSVDTPGFVGCIRDLRVNG 127 (128)
T ss_dssp SSSEEEEEEEEETTEEEEEETTSEEEEEESSST---THHCBESEEEEEESSTTTTCTC--TTSSTTSB-EEEEEEEEETT
T ss_pred ccceeEEEEEEeeeeEEEEecCccceEEecccc---ceecccCCCCEEEecccCcccc--ccccCCCCcEEEcCeEEECC
Confidence 577999999999999999999999888775421 1002233445777776542211 11111667888888887753
No 31
>PF14099 Polysacc_lyase: Polysaccharide lyase; PDB: 3ILR_A 3IKW_A 3INA_A 3IMN_A 3IN9_A 2ZZJ_A.
Probab=45.71 E-value=74 Score=27.92 Aligned_cols=73 Identities=21% Similarity=0.389 Sum_probs=46.7
Q ss_pred cCCCCCCCcEEEEE--EECc---ceeEEEeCCeeEEEEeCCCCCCCCC-CceeEEEEEeeCCCCCCCCCccccCCCCCCE
Q 022492 156 LWFDPTQDFHHYAV--LWSP---SELIFFVDDVPIRRYPRKSDATFPL-RPMYLYGSIWDASSWATEEGRYKADYKYQPF 229 (296)
Q Consensus 156 l~~d~~~dFHtY~i--~Wtp---~~I~fyVDG~~vrt~~~~~~~~~P~-~Pm~l~lnlW~gg~Wat~gG~~~~d~~~~Pf 229 (296)
+.......||.+.| .|.+ ..|..++||+++...+.. ..++. ...++.++|.-.+ |.+..+ .....
T Consensus 146 ~~~~~~G~W~~~~i~~~~s~~~~G~~~vw~nG~~v~~~~g~--~~~~~~~~~y~K~GiYr~~-~~~~~~----~~~~~-- 216 (224)
T PF14099_consen 146 LGPVERGKWHDFVIHVKWSPDSDGFLEVWLNGKLVVDYKGP--TGYNDDRGPYFKFGIYRSG-WKNDPN----ESDTQ-- 216 (224)
T ss_dssp CCCS-TTSEEEEEEEEEE-CCCTEEEEEEECCEECCEEEEE--ECECCSSEEEEEEEEEEHC-CHHHSC------SS---
T ss_pred CCCcCCCcEEEEEEEEEECCCCCEEEEEEECCEEEEEEeCC--ceeCCCCcceeEEEEECCC-CcCCCc----ccccE--
Confidence 33344589999976 5775 669999999999888763 34554 7889999998643 321112 11111
Q ss_pred EEEEeEEEE
Q 022492 230 VGQYRNFKI 238 (296)
Q Consensus 230 ~a~~~~~~v 238 (296)
.+||+|++
T Consensus 217 -vy~D~v~~ 224 (224)
T PF14099_consen 217 -VYYDNVRI 224 (224)
T ss_dssp -EEEEEEE-
T ss_pred -EEeccccC
Confidence 88999875
No 32
>KOG1834 consensus Calsyntenin [Extracellular structures]
Probab=45.22 E-value=25 Score=36.86 Aligned_cols=53 Identities=17% Similarity=0.374 Sum_probs=39.2
Q ss_pred CCCCcEEEEEEECcceeEEEeCCeeEEEEeCCCCCCCCCCceeEEEEEeeCCCCC
Q 022492 160 PTQDFHHYAVLWSPSELIFFVDDVPIRRYPRKSDATFPLRPMYLYGSIWDASSWA 214 (296)
Q Consensus 160 ~~~dFHtY~i~Wtp~~I~fyVDG~~vrt~~~~~~~~~P~~Pm~l~lnlW~gg~Wa 214 (296)
-.++||.|.+.-.--.++.||||+...-..-. .+||-.|.++-..+-+|--|.
T Consensus 440 CD~EWH~Y~ln~efp~VtlyvDG~Sfep~~i~--ddwplHpsk~~tqLvVGACW~ 492 (952)
T KOG1834|consen 440 CDNEWHHYVLNVEFPDVTLYVDGKSFEPPLIT--DDWPLHPSKIETQLVVGACWQ 492 (952)
T ss_pred hhhhhheeEEeecCceEEEEEcCcccCCceec--cCCccCcccccceeEEeeecc
Confidence 35789999999965559999999875432222 478877777777777777786
No 33
>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=41.04 E-value=72 Score=23.67 Aligned_cols=42 Identities=24% Similarity=0.327 Sum_probs=29.6
Q ss_pred cCCCCeE--EeCCEEEEEEecCCCCeeEEecceeeEEEEEEEEecCC
Q 022492 50 WGPQHQR--VDQGTLTVWLDSSSGSGFKSLHSYRSGYFGASIKLQPG 94 (296)
Q Consensus 50 w~~~nv~--v~~g~L~Ltl~~~~Gs~i~Sk~~~~YG~~EariKlp~g 94 (296)
+.++++. +.++.|.|+..+..... ...+.+|+|+=+++||..
T Consensus 18 ~~~edI~v~v~~~~L~I~g~~~~~~~---~~~~~~~~f~r~~~LP~~ 61 (83)
T cd06526 18 FKPEELKVKVSDNKLVVEGKHEERED---EHGYVSREFTRRYQLPEG 61 (83)
T ss_pred CCHHHcEEEEECCEEEEEEEEeeecc---CCCEEEEEEEEEEECCCC
Confidence 4455554 45999999987654221 345678999999999974
No 34
>PF09224 DUF1961: Domain of unknown function (DUF1961); InterPro: IPR015305 Members of this family are found in a set of hypothetical bacterial proteins. Their exact function has not, as yet, been determined. ; PDB: 1OQ1_C.
Probab=39.79 E-value=2.7e+02 Score=25.29 Aligned_cols=160 Identities=15% Similarity=0.257 Sum_probs=74.9
Q ss_pred CCCeEEeCCEEEEE--EecCC-C--Ce--eEEecceeeE-EEEEEEEecCCCCCccEEEEEeccCCCCCCCCceEEE--E
Q 022492 52 PQHQRVDQGTLTVW--LDSSS-G--SG--FKSLHSYRSG-YFGASIKLQPGYTAGVITSLYLSNNQDHPGNHDEVDI--E 121 (296)
Q Consensus 52 ~~nv~v~~g~L~Lt--l~~~~-G--s~--i~Sk~~~~YG-~~EariKlp~g~s~G~v~Afwl~~~~~~~~~~~EIDi--E 121 (296)
+.+|++.+|.|+|+ ++.+. | +- +=.+..|-=+ +++...+--.- .|+..=|+--... .+| || +
T Consensus 25 ~~~~t~~~~~m~l~~~~~~e~~~~~~hfVlW~p~~Fp~~i~IsweF~p~~e--pGLamlfF~Aag~-----~G~-d~fd~ 96 (218)
T PF09224_consen 25 PAKVTFQNGRMELSGELDPEQFGDAAHFVLWCPEVFPDDIRISWEFTPLAE--PGLAMLFFAAAGM-----NGE-DIFDP 96 (218)
T ss_dssp SEEEE-GGGSEEEE------ESSTT--EEEE-SS-B-SSEEEEEEEEEEE---SEEEEEEEEEEET-----TS---TT-T
T ss_pred CeEEeecCCcEEEeeeeccccccccccEEEECcccCCCCeEEEEEEEEcCC--CCEEEEEeecccC-----CCC-cccCC
Confidence 45677779999998 43322 1 11 1222333222 34444443332 7887777665432 122 22 2
Q ss_pred EcCCCC--------CCCeEEEeeeeeCCCCCCc---------cccce---eEEe---cCCCCCCCcEEEEEEECcceeEE
Q 022492 122 FLGTIP--------GKPYTLQTNVYIRGSGDGR---------LIGRE---LRFH---LWFDPTQDFHHYAVLWSPSELIF 178 (296)
Q Consensus 122 ~lG~~~--------g~p~~~qtnv~~~g~~~~~---------~~gre---~~~~---l~~d~~~dFHtY~i~Wtp~~I~f 178 (296)
-+-..+ ++-.++|..+|........ ..|.. |... ...|+ ..|+.-.|.=....|.|
T Consensus 97 ~l~~RtG~y~qyhs~dina~HiSYfrr~~~eeraf~t~nLRKs~gf~lvaqGaDplp~~~d~-~~~Yr~~i~K~~~~v~f 175 (218)
T PF09224_consen 97 SLKPRTGSYPQYHSGDINAYHISYFRRKWPEERAFHTCNLRKSPGFHLVAQGADPLPPVEDA-RGPYRMEIVKDGRTVRF 175 (218)
T ss_dssp TS----S-THHHHSSSEEEEEEEEEEESSHHHHTS-EEEEEEETTTEEEEEEE-----GGG---S-EEEEEEEETTEEEE
T ss_pred ccccccCcccceecccHHHHHHHHhcccCcccccccccchhhCCCcceeeccCCCCCCcccc-CCCEEEEEEEcCCEEEE
Confidence 222222 2234778888864322110 00100 1111 12233 36666688889999999
Q ss_pred EeCCeeEEEEeCCCCCCCCCCceeEEEEEeeCCCCCCCCCccccCCCC-CCEEEEEeEEEE
Q 022492 179 FVDDVPIRRYPRKSDATFPLRPMYLYGSIWDASSWATEEGRYKADYKY-QPFVGQYRNFKI 238 (296)
Q Consensus 179 yVDG~~vrt~~~~~~~~~P~~Pm~l~lnlW~gg~Wat~gG~~~~d~~~-~Pf~a~~~~~~v 238 (296)
.|||.+|...+.......|- -.+| +|=..+ +|..|.|++++|
T Consensus 176 ~In~L~vf~w~Dd~~~~gPv----------------l~~G--~IGfRqMapl~A~Yrnl~V 218 (218)
T PF09224_consen 176 SINGLPVFSWTDDGSTYGPV----------------LRGG--RIGFRQMAPLVARYRNLEV 218 (218)
T ss_dssp EETTEEEEEEE--SSSSSS-------------------SB--EEEEEEETT-EEEEEEEEE
T ss_pred EECCEEEEEEEcCCCccCCc----------------ccCc--EeeeeccchhhhhhccccC
Confidence 99999999987643211221 1245 333333 899999999986
No 35
>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs). A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.
Probab=38.18 E-value=41 Score=25.33 Aligned_cols=34 Identities=18% Similarity=0.207 Sum_probs=22.5
Q ss_pred eeEEEeCCeeEEEEeCCCCCCCCC-CceeEEEEEe
Q 022492 175 ELIFFVDDVPIRRYPRKSDATFPL-RPMYLYGSIW 208 (296)
Q Consensus 175 ~I~fyVDG~~vrt~~~~~~~~~P~-~Pm~l~lnlW 208 (296)
.+.|||||+++.+........++- .|-.-.|.+-
T Consensus 44 ~~~W~vdg~~~g~~~~~~~~~~~~~~~G~h~l~vv 78 (89)
T PF06832_consen 44 PVYWFVDGEPLGTTQPGHQLFWQPDRPGEHTLTVV 78 (89)
T ss_pred cEEEEECCEEcccCCCCCeEEeCCCCCeeEEEEEE
Confidence 788999999997665543333433 6666666663
No 36
>cd06470 ACD_IbpA-B_like Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins. IbpA and IbpB are 16 kDa small heat shock proteins (sHsps). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. IbpA and IbpB are produced during high-level production of various heterologous proteins, specifically human prorenin, renin and bovine insulin-like growth factor 2 (bIGF-2), and are strongly associated with inclusion bodies containing these heterologous proteins. IbpA and IbpB work as an integrated system to stabilize thermally aggregated proteins in a disaggregation competent state. The chaperone activity of IbpB is also significantly elevated as the temperature increases from normal to heat shock. The high temperature results in the disassociation of 2-3-MDa IbpB oligomers into smaller approximately 6
Probab=31.46 E-value=1.3e+02 Score=22.74 Aligned_cols=44 Identities=14% Similarity=0.171 Sum_probs=30.0
Q ss_pred cCCCCeEE--eCCEEEEEEecCCCC----eeEEecceeeEEEEEEEEecCC
Q 022492 50 WGPQHQRV--DQGTLTVWLDSSSGS----GFKSLHSYRSGYFGASIKLQPG 94 (296)
Q Consensus 50 w~~~nv~v--~~g~L~Ltl~~~~Gs----~i~Sk~~~~YG~~EariKlp~g 94 (296)
..++++.+ .++.|.|+..+.... .+. ...+.+|.|+-+++||.+
T Consensus 22 ~~kedi~v~~~~~~L~I~g~~~~~~~~~~~~~-~~e~~~g~f~R~~~LP~~ 71 (90)
T cd06470 22 FSEDDLEIEVENNQLTVTGKKADEENEEREYL-HRGIAKRAFERSFNLADH 71 (90)
T ss_pred CCHHHeEEEEECCEEEEEEEEcccccCCCcEE-EEEEeceEEEEEEECCCC
Confidence 34555555 589999998765422 111 235779999999999974
No 37
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=28.74 E-value=25 Score=27.60 Aligned_cols=14 Identities=50% Similarity=0.453 Sum_probs=5.5
Q ss_pred hhHHHHHhhhhhcc
Q 022492 5 LYLLLPLLILMTIS 18 (296)
Q Consensus 5 ~~~~~~~~~~~~~~ 18 (296)
|+|++++++|+.+|
T Consensus 7 llL~l~LA~lLlis 20 (95)
T PF07172_consen 7 LLLGLLLAALLLIS 20 (95)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333343444433
No 38
>PHA02752 hypothetical protein; Provisional
Probab=27.96 E-value=2.7e+02 Score=24.74 Aligned_cols=30 Identities=13% Similarity=0.281 Sum_probs=19.2
Q ss_pred ccCccccCcCcc-CCCCeEEeCCEEEEEEec
Q 022492 39 SIGFDQAFRNLW-GPQHQRVDQGTLTVWLDS 68 (296)
Q Consensus 39 ~~~f~~~~~~~w-~~~nv~v~~g~L~Ltl~~ 68 (296)
+.....+|+... +..|+.+++|...|++..
T Consensus 49 naa~aNgfd~I~iddgh~n~d~gq~sitaSa 79 (242)
T PHA02752 49 NAALANGFDGILIDDGHFNCDGGQCSITASA 79 (242)
T ss_pred CccCCCCccEEEEecCcEeecCCeEEEEEEe
Confidence 444555565433 334788888888888764
No 39
>PF10648 Gmad2: Immunoglobulin-like domain of bacterial spore germination; InterPro: IPR018911 This domain is found linked to IPR019606 from INTERPRO in some bacterial proteins. It is predicted to contain an immunoglobulin-like all-beta fold.
Probab=27.39 E-value=2.5e+02 Score=21.53 Aligned_cols=49 Identities=18% Similarity=0.340 Sum_probs=31.8
Q ss_pred CCEEEEEEecCCCCee------EEecceeeEEEEEEEEec---CCCCCccEEEEEeccCC
Q 022492 59 QGTLTVWLDSSSGSGF------KSLHSYRSGYFGASIKLQ---PGYTAGVITSLYLSNNQ 109 (296)
Q Consensus 59 ~g~L~Ltl~~~~Gs~i------~Sk~~~~YG~~EariKlp---~g~s~G~v~Afwl~~~~ 109 (296)
.+.+.+.+....|--+ .+...-.+|.|++.|.++ ++ .|++-.|.....+
T Consensus 28 Egtv~~rv~D~~g~vl~e~~~~a~~g~~~~g~F~~tv~~~~~~~~--~g~l~v~~~s~~d 85 (88)
T PF10648_consen 28 EGTVNIRVRDGHGEVLAEGFVTATGGAPSWGPFEGTVSFPPPPPG--KGTLEVFEDSAKD 85 (88)
T ss_pred eeEEEEEEEcCCCcEEEEeeEEeccCCCcccceEEEEEeCCCCCC--ceEEEEEEeCCCC
Confidence 5666666654444322 123566788999988887 44 7888777776655
No 40
>cd06464 ACD_sHsps-like Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=26.81 E-value=2.2e+02 Score=20.39 Aligned_cols=44 Identities=18% Similarity=0.202 Sum_probs=30.7
Q ss_pred CCCCeEE--eCCEEEEEEecCCCC---eeEEecceeeEEEEEEEEecCC
Q 022492 51 GPQHQRV--DQGTLTVWLDSSSGS---GFKSLHSYRSGYFGASIKLQPG 94 (296)
Q Consensus 51 ~~~nv~v--~~g~L~Ltl~~~~Gs---~i~Sk~~~~YG~~EariKlp~g 94 (296)
.++++.+ .++.|.++..+.... .-.......+|.|+-++++|.+
T Consensus 19 ~~~~i~V~v~~~~l~I~g~~~~~~~~~~~~~~~~~~~~~f~r~~~LP~~ 67 (88)
T cd06464 19 KKEDIKVEVEDGVLTISGEREEEEEEEENYLRRERSYGSFSRSFRLPED 67 (88)
T ss_pred CHHHeEEEEECCEEEEEEEEecccccCCcEEEEEEeCcEEEEEEECCCC
Confidence 4455544 589999998765422 1223466789999999999975
No 41
>PF07691 PA14: PA14 domain; InterPro: IPR011658 The PA14 domain forms an insert in bacterial beta-glucosidases, other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins and bacterial toxins, including anthrax protective antigen (PA). The domain also occurs in a Dictyostelium pre-spore cell-inducing factor Psi and in fibrocystin, the mammalian protein whose mutation leads to polycystic kidney and hepatic disease. The crystal structure of PA shows that this domain (named PA14 after its location in the PA20 pro-peptide) has a beta-barrel structure. The PA14 domain sequence suggests a binding function, rather than a catalytic role. The PA14 domain distribution is compatible with carbohydrate binding [].; PDB: 2XVG_A 2XVK_A 2XVL_A 2XJU_A 2XJT_A 2XJQ_A 2XJS_A 2XJV_A 2XJP_A 2XJR_A ....
Probab=24.08 E-value=1e+02 Score=24.69 Aligned_cols=30 Identities=10% Similarity=0.110 Sum_probs=24.7
Q ss_pred CCCCcEEEEEEECcceeEEEeCCeeEEEEeC
Q 022492 160 PTQDFHHYAVLWSPSELIFFVDDVPIRRYPR 190 (296)
Q Consensus 160 ~~~dFHtY~i~Wtp~~I~fyVDG~~vrt~~~ 190 (296)
+.++-|++.+. ..+.++++|||+++-....
T Consensus 57 ~~~G~y~f~~~-~~d~~~l~idg~~vid~~~ 86 (145)
T PF07691_consen 57 PETGTYTFSLT-SDDGARLWIDGKLVIDNWG 86 (145)
T ss_dssp SSSEEEEEEEE-ESSEEEEEETTEEEEECSC
T ss_pred ccCceEEEEEE-ecccEEEEECCEEEEcCCc
Confidence 46788888888 7788999999999977654
No 42
>PF11191 DUF2782: Protein of unknown function (DUF2782); InterPro: IPR021357 This is a bacterial family of proteins whose function is unknown.
Probab=23.92 E-value=2.4e+02 Score=22.15 Aligned_cols=18 Identities=44% Similarity=0.756 Sum_probs=12.2
Q ss_pred EEecCCCCCccEEEEEeccCCC
Q 022492 89 IKLQPGYTAGVITSLYLSNNQD 110 (296)
Q Consensus 89 iKlp~g~s~G~v~Afwl~~~~~ 110 (296)
||+-+. .| +.+||+..+.
T Consensus 63 IkV~P~--~G--~~Yyl~d~dg 80 (105)
T PF11191_consen 63 IKVQPK--AG--PPYYLVDPDG 80 (105)
T ss_pred EEEEeC--CC--CCEEEECCCC
Confidence 444444 56 9999998864
No 43
>COG0071 IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=22.00 E-value=3.6e+02 Score=22.23 Aligned_cols=45 Identities=13% Similarity=0.092 Sum_probs=30.0
Q ss_pred cCCCCeEE--eCCEEEEEEecCCC----CeeEEecceeeEEEEEEEEecCC
Q 022492 50 WGPQHQRV--DQGTLTVWLDSSSG----SGFKSLHSYRSGYFGASIKLQPG 94 (296)
Q Consensus 50 w~~~nv~v--~~g~L~Ltl~~~~G----s~i~Sk~~~~YG~~EariKlp~g 94 (296)
+.++.+.+ .++.|.|+..+... ..-.-.....||.|+-+++||..
T Consensus 61 ~~kedI~I~~~~~~l~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~~~Lp~~ 111 (146)
T COG0071 61 VDKEDIEITVEGNTLTIRGEREEEEEEEEEGYLRRERAYGEFERTFRLPEK 111 (146)
T ss_pred CChHHeEEEEECCEEEEEEEecccccccCCceEEEEEEeeeEEEEEECccc
Confidence 34555444 58888888877542 12222355679999999999975
No 44
>cd06481 ACD_HspB9_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB9 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB9 is expressed exclusively in the normal testis and in various tumor samples and is a cancer/testis antigen. hHspB9 interacts with TCTEL1 (T-complex testis expressed protein -1), a subunit of dynein. hHspB9 and TCTEL1 are co-expressed in similar cells within the testis and in tumor cells. Included in this group is Xenopus Hsp30, a developmentally-regulated heat-inducible molecular chaperone.
Probab=21.78 E-value=2e+02 Score=21.75 Aligned_cols=45 Identities=20% Similarity=0.169 Sum_probs=28.4
Q ss_pred cCCCCeEE--eCCEEEEEEecCCCCeeEE-ecceeeEEEEEEEEecCC
Q 022492 50 WGPQHQRV--DQGTLTVWLDSSSGSGFKS-LHSYRSGYFGASIKLQPG 94 (296)
Q Consensus 50 w~~~nv~v--~~g~L~Ltl~~~~Gs~i~S-k~~~~YG~~EariKlp~g 94 (296)
+.++.+.+ .++.|.|+..+.....-.. ...+.+|.|.=++.||..
T Consensus 18 ~~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~~~~~~~F~R~~~LP~~ 65 (87)
T cd06481 18 FSPEDLSVRVDGRKLVVTGKREKKNEDEKGSFSYEYQEFVREAQLPEH 65 (87)
T ss_pred CChHHeEEEEECCEEEEEEEEeeecccCCCcEEEEeeEEEEEEECCCC
Confidence 45565544 5999999987543110000 112468999999999964
No 45
>PF08329 ChitinaseA_N: Chitinase A, N-terminal domain; InterPro: IPR013540 This domain is found in a number of bacterial chitinases and similar viral proteins. It is organised into a fibronectin III module domain-like fold, comprising only beta strands. Its function is not known, but it may be involved in interaction with the enzyme substrate, chitin [, ]. It is separated by a hinge region from the catalytic domain (IPR001223 from INTERPRO); this hinge region is probably mobile, allowing the N-terminal domain to have different relative positions in solution []. ; GO: 0004568 chitinase activity; PDB: 2WLY_A 1EDQ_A 2WM0_A 1X6N_A 1NH6_A 2WK2_A 1EHN_A 2WLZ_A 1EIB_A 1FFR_A ....
Probab=21.47 E-value=2.8e+02 Score=23.21 Aligned_cols=59 Identities=20% Similarity=0.335 Sum_probs=32.8
Q ss_pred cEEEEEEEC------cceeEEEeCCeeEEEEeCCCCCCCCCCceeEEEEEeeCCCCCCCCCccccCCCCCCEEEEEeEEE
Q 022492 164 FHHYAVLWS------PSELIFFVDDVPIRRYPRKSDATFPLRPMYLYGSIWDASSWATEEGRYKADYKYQPFVGQYRNFK 237 (296)
Q Consensus 164 FHtY~i~Wt------p~~I~fyVDG~~vrt~~~~~~~~~P~~Pm~l~lnlW~gg~Wat~gG~~~~d~~~~Pf~a~~~~~~ 237 (296)
--.+.|.|+ -+.-..|.||++|.+=. -+ +.-...+.. +.||+ |.|.++=..
T Consensus 37 ~v~V~VtwN~WsG~~Gd~~kly~dG~~V~tG~------~~-~~~~a~~~~-------~~gG~---------y~~~VeLCN 93 (133)
T PF08329_consen 37 QVDVSVTWNVWSGTNGDTAKLYFDGVLVWTGP------SP-QQKSATFTV-------TKGGR---------YQMQVELCN 93 (133)
T ss_dssp SEEEEEEEE-SSS---SEEEEEETTEEEEEEE---------SEEEEEEEE--------S-EE---------EEEEEEEEE
T ss_pred ceEEEEEEEEecCCCCCEEEEEECCEEEEeCC------Cc-cCceEEEEe-------cCCCE---------EEEEEEEEC
Confidence 344555554 46778899999998432 22 222223333 23674 667887777
Q ss_pred EeeecCCC
Q 022492 238 IAGCTADG 245 (296)
Q Consensus 238 v~~~~~~~ 245 (296)
..||+.+.
T Consensus 94 ~~GCS~S~ 101 (133)
T PF08329_consen 94 ADGCSTSA 101 (133)
T ss_dssp TTEEEE--
T ss_pred CCCcccCC
Confidence 77887643
No 46
>PF00011 HSP20: Hsp20/alpha crystallin family This prints entry is a subset of the Pfam entry.; InterPro: IPR002068 Prokaryotic and eukaryotic organisms respond to heat shock or other environmental stress by inducing the synthesis of proteins collectively known as heat-shock proteins (hsp) []. Amongst them is a family of proteins with an average molecular weight of 20 Kd, known as the hsp20 proteins []. These seem to act as chaperones that can protect other proteins against heat-induced denaturation and aggregation. Hsp20 proteins seem to form large heterooligomeric aggregates. Structurally, this family is characterised by the presence of a conserved C-terminal domain of about 100 residues.; PDB: 2BOL_B 3N3E_B 2H50_P 2H53_F 2BYU_L 1GME_D 3VQM_J 3VQK_E 3VQL_A 3AAC_A ....
Probab=20.48 E-value=3.2e+02 Score=20.54 Aligned_cols=43 Identities=21% Similarity=0.281 Sum_probs=26.4
Q ss_pred CCCCeE--EeCCEEEEEEecC---CCCeeEEecceeeEEEEEEEEecCC
Q 022492 51 GPQHQR--VDQGTLTVWLDSS---SGSGFKSLHSYRSGYFGASIKLQPG 94 (296)
Q Consensus 51 ~~~nv~--v~~g~L~Ltl~~~---~Gs~i~Sk~~~~YG~~EariKlp~g 94 (296)
.+++++ +.++.|.|+..+. .+... ....+.+|.|+-++.||..
T Consensus 19 ~~edi~I~~~~~~L~I~g~~~~~~~~~~~-~~~~~~~~~f~r~~~lP~~ 66 (102)
T PF00011_consen 19 DKEDIKIKVDDNKLVISGKRKEEEEDDRY-YRSERRYGSFERSIRLPED 66 (102)
T ss_dssp -GGGEEEEEETTEEEEEEEEEGEECTTCE-EEE-S-SEEEEEEEE-STT
T ss_pred ChHHEEEEEecCccceeceeeeeeeeeee-eecccccceEEEEEcCCCc
Confidence 344544 4699999998765 22222 2234679999999999975
Done!