Query 022493
Match_columns 296
No_of_seqs 144 out of 1186
Neff 8.9
Searched_HMMs 46136
Date Fri Mar 29 03:58:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022493.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022493hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03145 Protein phosphatase 2 100.0 4.9E-47 1.1E-51 343.3 28.8 227 16-290 102-339 (365)
2 KOG0698 Serine/threonine prote 100.0 2E-46 4.3E-51 337.7 27.2 237 12-289 70-312 (330)
3 PF00481 PP2C: Protein phospha 100.0 1.3E-45 2.8E-50 322.4 17.9 229 1-273 14-254 (254)
4 KOG0697 Protein phosphatase 1B 100.0 6.2E-44 1.3E-48 298.5 22.7 234 14-287 50-297 (379)
5 PTZ00224 protein phosphatase 2 100.0 4.9E-42 1.1E-46 311.8 27.0 215 15-284 46-274 (381)
6 COG0631 PTC1 Serine/threonine 100.0 3.1E-41 6.8E-46 294.6 21.8 228 4-284 26-255 (262)
7 KOG0700 Protein phosphatase 2C 100.0 4.8E-41 1E-45 296.8 21.0 241 14-263 96-380 (390)
8 KOG0699 Serine/threonine prote 100.0 8.5E-39 1.8E-43 276.5 19.9 172 100-289 328-511 (542)
9 PRK14559 putative protein seri 100.0 1.7E-35 3.8E-40 283.0 23.9 222 16-287 413-641 (645)
10 cd00143 PP2Cc Serine/threonine 100.0 3.3E-34 7.1E-39 249.5 27.9 220 16-280 29-254 (254)
11 smart00332 PP2Cc Serine/threon 100.0 4.7E-34 1E-38 249.0 25.3 218 15-278 32-255 (255)
12 KOG1323 Serine/threonine phosp 100.0 5.5E-29 1.2E-33 213.7 23.6 265 11-285 138-491 (493)
13 KOG0618 Serine/threonine phosp 99.9 6E-21 1.3E-25 183.6 15.5 231 2-285 537-776 (1081)
14 KOG1379 Serine/threonine prote 99.8 1.3E-19 2.7E-24 156.0 19.1 202 15-280 101-330 (330)
15 PF13672 PP2C_2: Protein phosp 99.7 8.7E-18 1.9E-22 142.7 9.8 100 99-243 94-194 (212)
16 smart00331 PP2C_SIG Sigma fact 99.7 3.7E-16 8.1E-21 130.7 18.9 162 14-258 27-192 (193)
17 TIGR02865 spore_II_E stage II 99.5 5.5E-13 1.2E-17 132.3 20.0 178 14-280 577-763 (764)
18 PF07228 SpoIIE: Stage II spor 99.5 9E-12 2E-16 104.0 20.8 181 15-281 2-193 (193)
19 COG2208 RsbU Serine phosphatas 98.5 2.4E-05 5.3E-10 72.0 19.6 181 15-281 173-366 (367)
20 PRK10693 response regulator of 78.9 24 0.00053 31.4 10.2 41 84-128 211-253 (303)
21 PF09436 DUF2016: Domain of un 45.7 13 0.00028 25.6 1.3 17 215-232 26-42 (72)
22 PF06972 DUF1296: Protein of u 38.5 43 0.00092 22.1 2.8 25 231-255 19-44 (60)
23 COG2168 DsrH Uncharacterized c 37.5 28 0.0006 25.4 2.1 32 211-243 20-51 (96)
24 PRK06369 nac nascent polypepti 28.5 2.2E+02 0.0049 21.5 5.7 43 202-244 39-88 (115)
25 PF01436 NHL: NHL repeat; Int 28.1 1.1E+02 0.0023 16.4 3.4 20 110-129 9-28 (28)
26 PRK15322 invasion protein OrgB 23.9 2.1E+02 0.0046 24.0 5.2 80 172-261 111-196 (210)
27 COG2873 MET17 O-acetylhomoseri 23.3 48 0.001 30.6 1.5 32 116-157 365-396 (426)
28 TIGR02276 beta_rpt_yvtn 40-res 21.8 1.1E+02 0.0024 17.5 2.6 18 113-130 3-20 (42)
29 PF05785 CNF1: Rho-activating 21.3 1.3E+02 0.0027 26.7 3.6 25 99-124 129-153 (281)
30 PRK13845 putative glycerol-3-p 20.5 2.6E+02 0.0056 26.5 5.7 13 20-34 324-336 (437)
No 1
>PLN03145 Protein phosphatase 2c; Provisional
Probab=100.00 E-value=4.9e-47 Score=343.35 Aligned_cols=227 Identities=28% Similarity=0.464 Sum_probs=186.7
Q ss_pred CeEEEEEeeCCCcCcHHHHHHHHHHhHHHHHHHHHHHHHhhcCCCCCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHhcc
Q 022493 16 DMMFCGIFDGHGPWGHFVAKKVRESMPSSLLCNWQETLAEASLLPDIDLDSDKKTHRFNIWKHSYVKTCAAVDQELEQHR 95 (296)
Q Consensus 16 ~~~l~~V~DG~Gg~G~~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 95 (296)
...||||||||| |+.+++++++.+++.+..... + .+.+++++.+++..+++.+.+..
T Consensus 102 ~~~lf~V~DGhG--G~~age~as~~l~~~i~~~~~-----------~----------~~~~~~al~~af~~~d~~~~~~~ 158 (365)
T PLN03145 102 PSAFYGVFDGHG--GKHAADFACYHLPRFIVEDED-----------F----------PREIEKVVSSAFLQTDTAFAEAC 158 (365)
T ss_pred CceEEEEEeCCC--CHHHHHHHHHHHHHHHHhhhc-----------c----------chhHHHHHHHHHHHHhHHHHhhh
Confidence 468999999999 999999999999998874210 0 01455667777777777775532
Q ss_pred C-CCCcCCcceEEEEEEECCeEEEEEeccCceEEEEecCCCceeEEEcCccCCCCChhhHHHHHHcCCeeEeecCCCCce
Q 022493 96 Q-IDSFYSGTTALTIVRQGEFIMVANVGDSRAVLATTSEDGSLVPVQLTVDFKPNLPYEAERIIQCKGRVFCLEDEPGVH 174 (296)
Q Consensus 96 ~-~~~~~~GtT~~~~~i~~~~l~~anvGDSr~~l~~~~~~g~~~~~~lt~dH~~~~~~E~~ri~~~gg~i~~~~~~~~~~ 174 (296)
. .....+|||++++++.++++|+|||||||+|+++ +| ++++||.||+|.++.|++||.+.||.+.. .
T Consensus 159 ~~~~~~~~GTTavv~li~~~~l~vaNvGDSRayl~r---~g--~~~~LT~DH~~~~~~E~~RI~~~Gg~v~~-------g 226 (365)
T PLN03145 159 SLDASLASGTTALAALVVGRSLVVANAGDCRAVLCR---RG--KAIEMSRDHKPMCSKERKRIEASGGYVYD-------G 226 (365)
T ss_pred ccccCCCCcCcEEEEEEECCeEEEEecCCceEEEEc---CC--eEEEecCCCCCCCHHHHHHHHHcCCceec-------c
Confidence 2 2234599999999999999999999999999997 45 56999999999999999999999998863 1
Q ss_pred eEecCCCCCCCcccccccCccccccc------CccccceeEEEEecCCCeEEEEecCCCCCCCCHHHHHHHHh----cCC
Q 022493 175 RVWLPNEECPGLAMSRAFGDYCVKDY------GLISVPEVTQRHITSRDQFVVLATDGVWDVISNQEAIQIVS----STP 244 (296)
Q Consensus 175 rv~~~~~~~~~l~~tRalGd~~~k~~------~v~~~Pdi~~~~l~~~d~fliL~SDGl~d~l~~~ei~~i~~----~~~ 244 (296)
|+ .+.+.+||||||..+|.. +++++|++..+++.++|.|||||||||||+|+++++++++. +..
T Consensus 227 ~v------~g~l~vTRalGD~~~k~~k~~~~~~vs~ePdv~~~~l~~~D~fLILaSDGLwdvls~ee~v~~i~~~l~~~~ 300 (365)
T PLN03145 227 YL------NGQLNVARALGDWHMEGMKGSDGGPLSAEPELMTTQLTEEDEFLIIGCDGIWDVFRSQNAVDFARRRLQEHN 300 (365)
T ss_pred eE------CCccccccccccccccccccccCCCcceEEEEEEEECCCCCEEEEEeCCccccCcCHHHHHHHHHHHHhcCC
Confidence 22 566789999999988753 37899999999999999999999999999999999876664 346
Q ss_pred ChHHHHHHHHHHHHHHHHhhcCCCCCCceEEEEEEccCCCCCcccC
Q 022493 245 NRAKSAKRLVECAVHAWKRKRKGIAMDDISAICLFFHSSPLSQQVH 290 (296)
Q Consensus 245 ~~~~~a~~L~~~a~~~~~~~~~g~~~DNiTvivv~~~~~~~~~~~~ 290 (296)
+++++|+.|++.|+. +| +.||||||||+|+..+.+..+.
T Consensus 301 ~p~~aa~~Lv~~Al~------rg-s~DNITvIVV~l~~~~~~~~~~ 339 (365)
T PLN03145 301 DPVMCSKELVDEALK------RK-SGDNLAVVVVCFQSQPPPNLVA 339 (365)
T ss_pred CHHHHHHHHHHHHHh------CC-CCCCEEEEEEEeecCCCccccc
Confidence 799999999999998 57 9999999999999865554443
No 2
>KOG0698 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=100.00 E-value=2e-46 Score=337.68 Aligned_cols=237 Identities=39% Similarity=0.561 Sum_probs=201.4
Q ss_pred CCCCCeEEEEEeeCCCcCcHHHHHHHHHHhHHHHHHHHHHHHHhhcCCCCCCCcchhhhhhHHHHHHHHHHHHH-HHHHH
Q 022493 12 GCQADMMFCGIFDGHGPWGHFVAKKVRESMPSSLLCNWQETLAEASLLPDIDLDSDKKTHRFNIWKHSYVKTCA-AVDQE 90 (296)
Q Consensus 12 ~~~~~~~l~~V~DG~Gg~G~~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~~ 90 (296)
.+.....||||||||| |+.+|+|+.++++..+..++...... +.++.++.++|. .++.+
T Consensus 70 ~~~~~~~ffgVfDGHG--G~~~A~~~~~~L~~~l~~~~~~~~~~------------------~~~~~a~~~~F~~~~D~~ 129 (330)
T KOG0698|consen 70 GGEQDTAFFGVFDGHG--GDLAAKFAAKHLHKNLLEQLAFPKDR------------------QDVKDALRRAFLTKTDSE 129 (330)
T ss_pred CCCCceEEEEEEeCCC--CHHHHHHHHHHHHHHHHhhhhcccch------------------HHHHHHHHHHHHHHHHHH
Confidence 3444789999999999 99999999999999988654332110 257788888888 58888
Q ss_pred HHhccCCCCcCCcceEEEEEEECC-eEEEEEeccCceEEEEecCCCceeEEEcCccCCCCChhhHHHHHHcCCeeEeecC
Q 022493 91 LEQHRQIDSFYSGTTALTIVRQGE-FIMVANVGDSRAVLATTSEDGSLVPVQLTVDFKPNLPYEAERIIQCKGRVFCLED 169 (296)
Q Consensus 91 ~~~~~~~~~~~~GtT~~~~~i~~~-~l~~anvGDSr~~l~~~~~~g~~~~~~lt~dH~~~~~~E~~ri~~~gg~i~~~~~ 169 (296)
+... ..+...+|||++++++.++ ++||||+|||||+|+++ .+ ++++||.||+|..+.|+.||.++||++.....
T Consensus 130 ~~~~-~~~~~~~gstav~~vi~~~~~l~vaN~GDSRaVl~~~--~~--~a~~Ls~DHkP~~~~E~~RI~~~GG~v~~~~~ 204 (330)
T KOG0698|consen 130 FLEK-REDNRSGGSTAVVALIKKGRKLYVANVGDSRAVLSRK--GG--VAVQLSVDHKPDREDERERIEAAGGRVSNWGG 204 (330)
T ss_pred HHhh-ccCCCCCcceeeeeeEecCCEEEEEEcCCCcEEEecC--CC--eeeeCCCCCCCCcHHHHHHHHHcCCEEEEcCC
Confidence 8865 2223568999888888755 99999999999999974 23 68999999999999999999999999996432
Q ss_pred CCCceeEecCCCCCCCcccccccCcccccccCccccceeEEEEecCCCeEEEEecCCCCCCCCHHHHHHHHhc----CCC
Q 022493 170 EPGVHRVWLPNEECPGLAMSRAFGDYCVKDYGLISVPEVTQRHITSRDQFVVLATDGVWDVISNQEAIQIVSS----TPN 245 (296)
Q Consensus 170 ~~~~~rv~~~~~~~~~l~~tRalGd~~~k~~~v~~~Pdi~~~~l~~~d~fliL~SDGl~d~l~~~ei~~i~~~----~~~ 245 (296)
.+|+ .+.|++||+|||+.+|..+++++|++....+...|+||||+||||||+++++|++++++. ..+
T Consensus 205 ---~~Rv------~G~LavsRa~GD~~~k~~~v~a~Pei~~~~~~~~deFLiLasDGiwDv~s~qeav~~V~~~~~~~~~ 275 (330)
T KOG0698|consen 205 ---VWRV------NGVLAVSRAFGDVELKSQGVIAEPEIQQVKINSDDEFLILASDGIWDVVSNQEAVDLVRDELASISS 275 (330)
T ss_pred ---cceE------eceEEEeeecCCHHhcCCcEecCCceEEEEcCCCCcEEEEeCCchhcccChHHHHHHHHHHhhcccc
Confidence 5677 678999999999999977799999999999999999999999999999999999999998 557
Q ss_pred hHHHHHHHHHHHHHHHHhhcCCCCCCceEEEEEEccCCCCCccc
Q 022493 246 RAKSAKRLVECAVHAWKRKRKGIAMDDISAICLFFHSSPLSQQV 289 (296)
Q Consensus 246 ~~~~a~~L~~~a~~~~~~~~~g~~~DNiTvivv~~~~~~~~~~~ 289 (296)
+..++..|.+.|+. +| +.||||||||+|.+.......
T Consensus 276 ~~~a~~~l~~~a~~------~~-s~DnitvvvV~l~~~~~~~~~ 312 (330)
T KOG0698|consen 276 PLAAAKLLATEALS------RG-SKDNITVVVVRLKSSPKSPSS 312 (330)
T ss_pred HHHHHHHHHHHHhh------cC-CCCCeEEEEEEecCccccccC
Confidence 89999999999998 57 999999999999988765443
No 3
>PF00481 PP2C: Protein phosphatase 2C; InterPro: IPR001932 This domain is found in protein phosphatase 2C, as well as other proteins eg. pyruvate dehydrogenase (lipoamide)-phosphatase (3.1.3.43 from EC), adenylate cyclase (4.6.1.1 from EC) and some bacterial stage II sporulation E proteins (3.1.3.16 from EC). Protein phosphatase 2C (PP2C) is one of the four major classes of mammalian serine/threonine specific protein phosphatases (3.1.3.16 from EC). PP2C [] is a monomeric enzyme of about 42 Kd which shows broad substrate specificity and is dependent on divalent cations (mainly manganese and magnesium) for its activity. Its exact physiological role is still unclear. Three isozymes are currently known in mammals: PP2C-alpha, -beta and -gamma. In yeast, there are at least four PP2C homologs: phosphatase PTC1 [], which has weak tyrosine phosphatase activity in addition to its activity on serines, phosphatases PTC2 and PTC3, and hypothetical protein YBR125c. Isozymes of PP2C are also known from Arabidopsis thaliana (ABI1, PPH1), Caenorhabditis elegans (FEM-2, F42G9.1, T23F11.1), Leishmania chagasi and Paramecium tetraurelia. In A. thaliana, the kinase associated protein phosphatase (KAPP) [] is an enzyme that dephosphorylates the Ser/Thr receptor-like kinase RLK5 and which contains a C-terminal PP2C domain. PP2C does not seem to be evolutionary related to the main family of serine/ threonine phosphatases: PP1, PP2A and PP2B. However, it is significantly similar to the catalytic subunit of pyruvate dehydrogenase phosphatase 3.1.3.43 from EC (PDPC) [], which catalyzes dephosphorylation and concomitant reactivation of the alpha subunit of the E1 component of the pyruvate dehydrogenase complex. PDPC is a mitochondrial enzyme and, like PP2C, is magnesium-dependent.; GO: 0003824 catalytic activity; PDB: 2I0O_A 2POP_C 2POM_A 2J4O_A 2I44_B 3MQ3_A 3N3C_A 2PNQ_B 2P8E_A 2IQ1_A ....
Probab=100.00 E-value=1.3e-45 Score=322.42 Aligned_cols=229 Identities=38% Similarity=0.554 Sum_probs=180.1
Q ss_pred CceeeeeecccC---CCCCeEEEEEeeCCCcCcHHHHHHHHHHhHHHHHHHHHHHHHhhcCCCCCCCcchhhhhhHHHHH
Q 022493 1 MCSFFVLEQEFG---CQADMMFCGIFDGHGPWGHFVAKKVRESMPSSLLCNWQETLAEASLLPDIDLDSDKKTHRFNIWK 77 (296)
Q Consensus 1 ~~~~~~~~~~~~---~~~~~~l~~V~DG~Gg~G~~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 77 (296)
|...+++..++. ...+..+|||||||| |..+++++++.++..+......... +.+.
T Consensus 14 ~eD~~~~~~~~~~~~~~~~~~l~~V~DGhg--G~~~a~~~~~~l~~~l~~~~~~~~~-------------------~~~~ 72 (254)
T PF00481_consen 14 MEDRHLIIQNFNSNSGNDNVSLFGVFDGHG--GSEAAEYASQNLPEFLKENLSFNDG-------------------NDIE 72 (254)
T ss_dssp HHEEEEEEEEETCCTTEEEEEEEEEEEEES--SSHHHHHHHHHHHHHHHHHHHHHTC-------------------HHHH
T ss_pred ccCEEEEecCccccCCCCCcEEEEEecCCC--ChhhHHHHHHHHHHHHHhhcccccc-------------------cchh
Confidence 345667777664 568899999999999 9999999999999777755433211 1456
Q ss_pred HHHHHHHHH-HHHHHHhccCC-CCcCCcceEEEEEEECCeEEEEEeccCceEEEEecCCCceeEEEcCccCCCCChhhHH
Q 022493 78 HSYVKTCAA-VDQELEQHRQI-DSFYSGTTALTIVRQGEFIMVANVGDSRAVLATTSEDGSLVPVQLTVDFKPNLPYEAE 155 (296)
Q Consensus 78 ~~l~~~~~~-~~~~~~~~~~~-~~~~~GtT~~~~~i~~~~l~~anvGDSr~~l~~~~~~g~~~~~~lt~dH~~~~~~E~~ 155 (296)
+++..+|.. +++.+...... ....+|||++++++.++++|+|||||||+|+++.+ + ..++||.||+|.++.|+.
T Consensus 73 ~al~~a~~~~~~~~~~~~~~~~~~~~~GsTa~v~li~~~~l~vanvGDSravl~~~~--~--~~~~Lt~dH~~~~~~E~~ 148 (254)
T PF00481_consen 73 EALRQAFLAFTDESLYSDSENNESSKSGSTATVALIDGNKLYVANVGDSRAVLCRNG--G--IIKQLTRDHKPSNPDERE 148 (254)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTHTTSEEEEEEEEEETTEEEEEEESS-EEEEEETT--E--EEEESS---STTSHHHHH
T ss_pred hcccceeeecccccccccccccccccccccccccccccceeEEEeeeeeeeeeeecc--c--cccccccccccchhhccc
Confidence 666666666 66666652111 34579999999999999999999999999999842 2 125999999999999999
Q ss_pred HHHHcCCeeEeecCCCCceeEecCCCCCCCcccccccCcccccc---cCccccceeEEEEecCCCeEEEEecCCCCCCCC
Q 022493 156 RIIQCKGRVFCLEDEPGVHRVWLPNEECPGLAMSRAFGDYCVKD---YGLISVPEVTQRHITSRDQFVVLATDGVWDVIS 232 (296)
Q Consensus 156 ri~~~gg~i~~~~~~~~~~rv~~~~~~~~~l~~tRalGd~~~k~---~~v~~~Pdi~~~~l~~~d~fliL~SDGl~d~l~ 232 (296)
||.++||.+.. ..|+ .+.|.+||||||..+|+ .+++++|+|..+++.++|.|||||||||||+|+
T Consensus 149 RI~~~gg~v~~------~~rv------~g~l~~sRalGd~~~k~~~~~~v~~~P~i~~~~l~~~d~flvlaSDGlwd~l~ 216 (254)
T PF00481_consen 149 RIRKAGGRVSE------NGRV------NGVLAVSRALGDFDLKPPGKPGVIAEPDISEVDLTPDDEFLVLASDGLWDVLS 216 (254)
T ss_dssp HHHHTT-GEEE------TEEE------TTTBSSSB-EE-GGGTTCTSSSSB---EEEEEEEBTTEEEEEEE-HHHHTTSH
T ss_pred eeecccccccc------chhh------hhccccccccccccccccccceeeeecccccccccccceEEEEEcccccccCC
Confidence 99999999885 3455 67789999999999999 779999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCC----hHHHHHHHHHHHHHHHHhhcCCCCCCce
Q 022493 233 NQEAIQIVSSTPN----RAKSAKRLVECAVHAWKRKRKGIAMDDI 273 (296)
Q Consensus 233 ~~ei~~i~~~~~~----~~~~a~~L~~~a~~~~~~~~~g~~~DNi 273 (296)
++|+.+++.+..+ ++.+|+.|++.|+. +| +.|||
T Consensus 217 ~~ei~~~v~~~~~~~~~~~~~a~~L~~~A~~------~g-s~DNi 254 (254)
T PF00481_consen 217 NEEIVDIVRESLNSGRSPQEAAEKLVDEAIA------RG-SKDNI 254 (254)
T ss_dssp HHHHHHHHHHHHHHHSHHHHHHHHHHHHHHH------TT-HHSHE
T ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHh------cC-CCCCC
Confidence 9999999988755 89999999999999 57 99997
No 4
>KOG0697 consensus Protein phosphatase 1B (formerly 2C) [Signal transduction mechanisms]
Probab=100.00 E-value=6.2e-44 Score=298.52 Aligned_cols=234 Identities=33% Similarity=0.490 Sum_probs=197.4
Q ss_pred CCCeEEEEEeeCCCcCcHHHHHHHHHHhHHHHHHHHHHHHHhhcCCCCCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHh
Q 022493 14 QADMMFCGIFDGHGPWGHFVAKKVRESMPSSLLCNWQETLAEASLLPDIDLDSDKKTHRFNIWKHSYVKTCAAVDQELEQ 93 (296)
Q Consensus 14 ~~~~~l~~V~DG~Gg~G~~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 93 (296)
-++|+||||||||. |+.+|+++++.+.+++...-.. .... ....++.++..+...|.++++.+..
T Consensus 50 l~dWSfFAVfDGHA--Gs~va~~c~~hLlehi~sse~F--~~~~-----------k~gsv~~~~~GIrtGFL~iDE~mr~ 114 (379)
T KOG0697|consen 50 LEDWSFFAVFDGHA--GSQVANHCAEHLLEHIISSEEF--RGMT-----------KNGSVENVEKGIRTGFLSIDEIMRT 114 (379)
T ss_pred ccCceEEEEEcCcc--chHHHHHHHHHHHHHhhhhHHH--hhhc-----------cCCcHHHHHhhHhhcceeHHHHHhh
Confidence 37899999999999 9999999999999888753111 1000 0123457888888888888887765
Q ss_pred ccCC--CCcCCcceEEEEEEECCeEEEEEeccCceEEEEecCCCceeEEEcCccCCCCChhhHHHHHHcCCeeEeecCCC
Q 022493 94 HRQI--DSFYSGTTALTIVRQGEFIMVANVGDSRAVLATTSEDGSLVPVQLTVDFKPNLPYEAERIIQCKGRVFCLEDEP 171 (296)
Q Consensus 94 ~~~~--~~~~~GtT~~~~~i~~~~l~~anvGDSr~~l~~~~~~g~~~~~~lt~dH~~~~~~E~~ri~~~gg~i~~~~~~~ 171 (296)
-... ...++|||++++++.-.++|++|+||||++++| +| ++..-|.||+|.+|.|++||+.+||.+-.
T Consensus 115 ~~~~~~~~drsGsTAVcv~vsp~h~y~~NcGDSRavl~r---ng--~~~f~TqDHKP~~p~EkeRIqnAGGSVMI----- 184 (379)
T KOG0697|consen 115 LSDISKGSDRSGSTAVCVFVSPTHIYIINCGDSRAVLCR---NG--EVVFSTQDHKPYLPKEKERIQNAGGSVMI----- 184 (379)
T ss_pred hhhhhcccccCCceEEEEEecCceEEEEecCcchhheec---CC--ceEEeccCCCCCChHHHHHHhcCCCeEEE-----
Confidence 4332 224699999999999999999999999999998 45 56889999999999999999999999885
Q ss_pred CceeEecCCCCCCCcccccccCcccccccC--------ccccceeEEEEecCCCeEEEEecCCCCCCCCHHHHHHHHhcC
Q 022493 172 GVHRVWLPNEECPGLAMSRAFGDYCVKDYG--------LISVPEVTQRHITSRDQFVVLATDGVWDVISNQEAIQIVSST 243 (296)
Q Consensus 172 ~~~rv~~~~~~~~~l~~tRalGd~~~k~~~--------v~~~Pdi~~~~l~~~d~fliL~SDGl~d~l~~~ei~~i~~~~ 243 (296)
.|| +|.|++||||||+.||..+ ++++|+|....-...|+||||||||+||+|+++|++++++..
T Consensus 185 --qRv------NGsLAVSRAlGDydyK~v~~kgp~eQlVSPEPev~~~~R~eedeFivlACDGIwDVMtneelcefv~sR 256 (379)
T KOG0697|consen 185 --QRV------NGSLAVSRALGDYDYKNVPGKGPTEQLVSPEPEVYIIERSEEDEFIVLACDGIWDVMTNEELCEFVKSR 256 (379)
T ss_pred --EEe------cceeeeehhccCcccccCCCCCchhcccCCCCceEEeeccccCcEEEEEccchhhhcccHHHHHHHHhh
Confidence 444 8999999999999999766 899999999998888889999999999999999999999875
Q ss_pred ----CChHHHHHHHHHHHHHHHHhhcCCCCCCceEEEEEEccCCCCCc
Q 022493 244 ----PNRAKSAKRLVECAVHAWKRKRKGIAMDDISAICLFFHSSPLSQ 287 (296)
Q Consensus 244 ----~~~~~~a~~L~~~a~~~~~~~~~g~~~DNiTvivv~~~~~~~~~ 287 (296)
.+..++|..+++.++. +| +.||||+|+|.|...|+..
T Consensus 257 l~Vt~dL~~vcn~VvDtCLh------KG-SRDNMsivlvcfp~APkv~ 297 (379)
T KOG0697|consen 257 LEVTSDLEEVCNDVVDTCLH------KG-SRDNMSIVLVCFPGAPKVS 297 (379)
T ss_pred heecccHHHHHHHHHHHHHh------cc-CccCceEEEEecCCCCCCC
Confidence 4678999999999998 48 9999999999998766553
No 5
>PTZ00224 protein phosphatase 2C; Provisional
Probab=100.00 E-value=4.9e-42 Score=311.76 Aligned_cols=215 Identities=34% Similarity=0.497 Sum_probs=175.1
Q ss_pred CCeEEEEEeeCCCcCcHHHHHHHHHHhHHHHHHHHHHHHHhhcCCCCCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHhc
Q 022493 15 ADMMFCGIFDGHGPWGHFVAKKVRESMPSSLLCNWQETLAEASLLPDIDLDSDKKTHRFNIWKHSYVKTCAAVDQELEQH 94 (296)
Q Consensus 15 ~~~~l~~V~DG~Gg~G~~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 94 (296)
++..||||||||| |..+|+++++.++..+..... . ...+.+.+++..+++++.+.
T Consensus 46 ~~~~lfgVfDGHg--G~~~S~~~~~~l~~~l~~~~~----------~-------------~~~~~l~~a~~~~d~~i~~~ 100 (381)
T PTZ00224 46 DDWGFFGVFDGHV--NDECSQYLARAWPQALEKEPE----------P-------------MTDERMEELCLEIDEEWMDS 100 (381)
T ss_pred CCceEEEEEeCCC--cHHHHHHHHHHHHHHHHhccc----------c-------------ccHHHHHHHHHHHHHHHHhc
Confidence 3457999999999 889999999999876642100 0 01123555666677777643
Q ss_pred cCCCCcCCcceEEEEEEE-CCeEEEEEeccCceEEEEecCCCceeEEEcCccCCCCChhhHHHHHHcCCeeEeecCCCCc
Q 022493 95 RQIDSFYSGTTALTIVRQ-GEFIMVANVGDSRAVLATTSEDGSLVPVQLTVDFKPNLPYEAERIIQCKGRVFCLEDEPGV 173 (296)
Q Consensus 95 ~~~~~~~~GtT~~~~~i~-~~~l~~anvGDSr~~l~~~~~~g~~~~~~lt~dH~~~~~~E~~ri~~~gg~i~~~~~~~~~ 173 (296)
. ..+|||++++++. +.++|++||||||+|++| +| ++++||.||++.++.|+.||.+.||.+..
T Consensus 101 ~----~~~GsTatv~lI~~~~~l~vaNVGDSRayl~r---~g--~~~~LT~DH~~~~~~E~~RI~~~gg~v~~------- 164 (381)
T PTZ00224 101 G----REGGSTGTFCVIMKDVHLQVGNVGDSRVLVCR---DG--KLVFATEDHKPNNPGERQRIEACGGRVVS------- 164 (381)
T ss_pred c----cCCCCeEEEEEEEECCEEEEEEcccceEEEEE---CC--EEEEcccCCCCCCHHHHhHHHHccCEecc-------
Confidence 2 2469999998876 579999999999999998 56 56999999999999999999999988763
Q ss_pred eeEecCCCCCCCcccccccCcccccccC--------ccccceeEEEEecCCCeEEEEecCCCCC-CCCHHHHHHHHhc--
Q 022493 174 HRVWLPNEECPGLAMSRAFGDYCVKDYG--------LISVPEVTQRHITSRDQFVVLATDGVWD-VISNQEAIQIVSS-- 242 (296)
Q Consensus 174 ~rv~~~~~~~~~l~~tRalGd~~~k~~~--------v~~~Pdi~~~~l~~~d~fliL~SDGl~d-~l~~~ei~~i~~~-- 242 (296)
.+..+.+.+||+|||..+|..+ ++++||+..+++.++| ||||||||||| +++++|+.+++.+
T Consensus 165 ------~Rv~G~l~vTRalGd~~~K~~~~~~~~~~~v~~~Pdi~~~~l~~~D-~llLaSDGL~d~~ls~eEi~~iv~~~l 237 (381)
T PTZ00224 165 ------NRVDGDLAVSRAFGDRSFKVKGTGDYLEQKVIAVPDVTHLTCQSND-FIILACDGVFEGNFSNEEVVAFVKEQL 237 (381)
T ss_pred ------ccccCceeeecccCCcccccccccccccCcceeeeEEEEEECCCCC-EEEEECCCcCcCccCHHHHHHHHHHHH
Confidence 2336778999999998877553 5689999999999887 89999999999 7999999999863
Q ss_pred --CCChHHHHHHHHHHHHHHHHhhcCCCCCCceEEEEEEccCCC
Q 022493 243 --TPNRAKSAKRLVECAVHAWKRKRKGIAMDDISAICLFFHSSP 284 (296)
Q Consensus 243 --~~~~~~~a~~L~~~a~~~~~~~~~g~~~DNiTvivv~~~~~~ 284 (296)
..+++++|+.|++.|+. +| +.||||||||+|...+
T Consensus 238 ~~~~~~~~aA~~Lv~~A~~------rG-s~DNITvIvV~~~~~~ 274 (381)
T PTZ00224 238 ETCDDLAVVAGRVCDEAIR------RG-SKDNISCLIVQLKDGA 274 (381)
T ss_pred hcCCCHHHHHHHHHHHHHh------cC-CCCCEEEEEEEeeCCC
Confidence 46789999999999999 58 9999999999998754
No 6
>COG0631 PTC1 Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=100.00 E-value=3.1e-41 Score=294.60 Aligned_cols=228 Identities=26% Similarity=0.384 Sum_probs=182.3
Q ss_pred eeeeecccCCCCCeEEEEEeeCCCcCcHHHHHHHHHHhHHHHHHHHHHHHHhhcCCCCCCCcchhhhhhHHHHHHHHHHH
Q 022493 4 FFVLEQEFGCQADMMFCGIFDGHGPWGHFVAKKVRESMPSSLLCNWQETLAEASLLPDIDLDSDKKTHRFNIWKHSYVKT 83 (296)
Q Consensus 4 ~~~~~~~~~~~~~~~l~~V~DG~Gg~G~~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 83 (296)
++.+..+..+.. ..||+|||||| |+.+++++++.+++.|.+.+.+....... +.+.+.+.++
T Consensus 26 ~~~~~~~~~~~~-~~l~~V~DG~G--Gh~~ge~aS~~~v~~l~~~~~~~~~~~~~---------------~~~~~~l~~~ 87 (262)
T COG0631 26 AFLIKPNENGNL-LLLFAVADGMG--GHAAGEVASKLAVEALARLFDETNFNSLN---------------ESLEELLKEA 87 (262)
T ss_pred ceeeccccCCcc-eeEEEEEeCcc--chhHHHHHHHHHHHHHHHHHHhccccccc---------------hhHHHHHHHH
Confidence 334444444444 68999999999 99999999999999999876653221100 0155666666
Q ss_pred HHHHHHHHHhccC--CCCcCCcceEEEEEEECCeEEEEEeccCceEEEEecCCCceeEEEcCccCCCCChhhHHHHHHcC
Q 022493 84 CAAVDQELEQHRQ--IDSFYSGTTALTIVRQGEFIMVANVGDSRAVLATTSEDGSLVPVQLTVDFKPNLPYEAERIIQCK 161 (296)
Q Consensus 84 ~~~~~~~~~~~~~--~~~~~~GtT~~~~~i~~~~l~~anvGDSr~~l~~~~~~g~~~~~~lt~dH~~~~~~E~~ri~~~g 161 (296)
+..+++++..... .....||||++++++.++++|+|||||||+|++| +| ..+|||.||++.++.++.++...+
T Consensus 88 ~~~~n~~i~~~~~~~~~~~~mgtTl~~~~~~~~~l~~a~vGDSR~yl~~---~~--~~~~lT~DH~~~~~~~~~~~~~~~ 162 (262)
T COG0631 88 ILKANEAIAEEGQLNEDVRGMGTTLVLLLIRGNKLYVANVGDSRAYLLR---DG--ELKQLTEDHSLVNRLEQRGIITPE 162 (262)
T ss_pred HHHHHHHHHHhhhcccccCCCceeEEEEEEECCeEEEEEccCCeEEEEc---CC--ceEEeccCCcHHHHHHHhcCCCHH
Confidence 6666776665432 3446799999999999999999999999999998 45 569999999999988888866554
Q ss_pred CeeEeecCCCCceeEecCCCCCCCcccccccCcccccccCccccceeEEEEecCCCeEEEEecCCCCCCCCHHHHHHHHh
Q 022493 162 GRVFCLEDEPGVHRVWLPNEECPGLAMSRAFGDYCVKDYGLISVPEVTQRHITSRDQFVVLATDGVWDVISNQEAIQIVS 241 (296)
Q Consensus 162 g~i~~~~~~~~~~rv~~~~~~~~~l~~tRalGd~~~k~~~v~~~Pdi~~~~l~~~d~fliL~SDGl~d~l~~~ei~~i~~ 241 (296)
+.... +. ...+|||||+... .+|++...++++++ |||||||||||.++++++.++++
T Consensus 163 ~~~~~------~~----------~~~ltralG~~~~------~~p~~~~~~~~~~d-~llL~SDGl~d~v~~~~i~~il~ 219 (262)
T COG0631 163 EARSH------PR----------RNALTRALGDFDL------LEPDITELELEPGD-FLLLCSDGLWDVVSDDEIVDILK 219 (262)
T ss_pred HHHhC------cc----------chhhhhhcCCCcc------cceeEEEEEcCCCC-EEEEECCCCccCcCHHHHHHHHh
Confidence 33332 11 1389999998865 77999999999995 89999999999999999999999
Q ss_pred cCCChHHHHHHHHHHHHHHHHhhcCCCCCCceEEEEEEccCCC
Q 022493 242 STPNRAKSAKRLVECAVHAWKRKRKGIAMDDISAICLFFHSSP 284 (296)
Q Consensus 242 ~~~~~~~~a~~L~~~a~~~~~~~~~g~~~DNiTvivv~~~~~~ 284 (296)
...++++++++|++.|+. +| +.||+|+++|.+....
T Consensus 220 ~~~~~~~~~~~li~~a~~------~g-~~DNiT~ilv~~~~~~ 255 (262)
T COG0631 220 NSETPQEAADKLIELALE------GG-GPDNITVVLVRLNGEG 255 (262)
T ss_pred cCCCHHHHHHHHHHHHHh------cC-CCCceEEEEEEeeccc
Confidence 888899999999999999 46 9999999999998765
No 7
>KOG0700 consensus Protein phosphatase 2C/pyruvate dehydrogenase (lipoamide) phosphatase [Signal transduction mechanisms]
Probab=100.00 E-value=4.8e-41 Score=296.76 Aligned_cols=241 Identities=28% Similarity=0.375 Sum_probs=185.1
Q ss_pred CCCeEEEEEeeCCCcCcHHHHHHHHHHhHHHHHHHHHHHHHhhcC--CCCCC-Ccc----------hhhhhhHHHHHHHH
Q 022493 14 QADMMFCGIFDGHGPWGHFVAKKVRESMPSSLLCNWQETLAEASL--LPDID-LDS----------DKKTHRFNIWKHSY 80 (296)
Q Consensus 14 ~~~~~l~~V~DG~Gg~G~~~s~~~~~~l~~~l~~~~~~~~~~~~~--~~~~~-~~~----------~~~~~~~~~l~~~l 80 (296)
.+++.|+||||||| |..+++|++++|..++..++...+-.... ..+.. .+. +.....-..+.++|
T Consensus 96 ~~~~~fvGIyDGhg--Gp~as~~v~~~L~~~v~~~L~~~~~~~~~~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~v~~al 173 (390)
T KOG0700|consen 96 ENGWLFVGIYDGHG--GPDASRFLSDHLYPYVARELQGLLWQDEERFPSEYKSEELEHLLVYWKQLSSADQRHGDVLEAL 173 (390)
T ss_pred cCCeEEEEEecCCC--CccHHHHHHHHHHHHHHHHhhhhhhhhccccccccccchhhhhhhhhhcccccCccchhHHHHH
Confidence 57899999999999 99999999999999999877664433211 11100 000 00000023566667
Q ss_pred HHHHHHHHHHHHhc------cCCCCcCCcceEEEEEEECCeEEEEEeccCceEEEEecCCCc-eeEEEcCccCCCCChhh
Q 022493 81 VKTCAAVDQELEQH------RQIDSFYSGTTALTIVRQGEFIMVANVGDSRAVLATTSEDGS-LVPVQLTVDFKPNLPYE 153 (296)
Q Consensus 81 ~~~~~~~~~~~~~~------~~~~~~~~GtT~~~~~i~~~~l~~anvGDSr~~l~~~~~~g~-~~~~~lt~dH~~~~~~E 153 (296)
.+||.+.++.+... ....-..+|+|+++.++.+..+||||+|||||+|++..+++. |.++|||.||+..+++|
T Consensus 174 ~~Af~~tee~fl~~v~~~~~~~p~lA~~GSC~Lv~~i~~~~LyVaN~GDSRAVLG~~~~~~~~~~A~qLS~dHn~~ne~E 253 (390)
T KOG0700|consen 174 SKAFEATEEDFLEMVDKQLQENPELALVGSCCLVGLIKGGDLYVANVGDSRAVLGVVENNGSWLVAVQLSTDHNASNEDE 253 (390)
T ss_pred HHHHHHHHHHHHHHHHHhhccchhhhhhcceEEEEEEeCCeEEEEecCcchhhhceecCCCCeEEEEecChhhccccHHH
Confidence 77777777666322 111225799999999999999999999999999999887887 69999999999999999
Q ss_pred HHHHHHcCCeeEeecCCCCceeEecCCCCCCCcccccccCcccccccC--------------------ccccceeEEEEe
Q 022493 154 AERIIQCKGRVFCLEDEPGVHRVWLPNEECPGLAMSRAFGDYCVKDYG--------------------LISVPEVTQRHI 213 (296)
Q Consensus 154 ~~ri~~~gg~i~~~~~~~~~~rv~~~~~~~~~l~~tRalGd~~~k~~~--------------------v~~~Pdi~~~~l 213 (296)
++||+..+-.-....-..+ +|| .|.|.+||||||..+|+.. ++++|+|..++|
T Consensus 254 v~Rir~eHPdd~~~vv~~~-~Rv------kG~L~vsRAfGd~~lK~~~~n~e~l~~~fr~~~~~t~PyltaeP~i~~HrL 326 (390)
T KOG0700|consen 254 VRRIRSEHPDDPHIVVNKH-WRV------KGILQVSRAFGDGYLKWPEFNQEPLLEKFRIPYIGTPPYLTAEPSITHHKL 326 (390)
T ss_pred HHHHHHhCCCCcceEeecc-cee------eEEEEeeeeccceeecchhhccchhHhhcCCCCCCCCCceeccceEEEEEc
Confidence 9999987632111110011 344 8899999999999998755 789999999999
Q ss_pred cCCCeEEEEecCCCCCCCCHHHHHHHHhcC----CChHHHHHHHHHHHHHHHHh
Q 022493 214 TSRDQFVVLATDGVWDVISNQEAIQIVSST----PNRAKSAKRLVECAVHAWKR 263 (296)
Q Consensus 214 ~~~d~fliL~SDGl~d~l~~~ei~~i~~~~----~~~~~~a~~L~~~a~~~~~~ 263 (296)
.+.|+||||+|||||++|+++|++.++... ...+.+|+.|++.|+..+..
T Consensus 327 ~p~DkFLIlASDGLwE~lsNeeaV~lV~~~i~~~~pd~~~A~hLIr~aL~~aak 380 (390)
T KOG0700|consen 327 TPNDKFLILASDGLWEYLSNEEAVSLVHEFISGKFPDGNPATHLIRHALGRAAK 380 (390)
T ss_pred CCCCeEEEEeccchhhhcChHHHHHHHHHhhccCCCCCCHHHHHHHHHHhhhhh
Confidence 999999999999999999999999999884 23578999999999986555
No 8
>KOG0699 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=100.00 E-value=8.5e-39 Score=276.48 Aligned_cols=172 Identities=31% Similarity=0.495 Sum_probs=150.1
Q ss_pred cCCcceEEEEEEECCeEEEEEeccCceEEEEecCCCceeEEEcCccCCCCChhhHHHHHHcCCeeEeecCCCCceeEecC
Q 022493 100 FYSGTTALTIVRQGEFIMVANVGDSRAVLATTSEDGSLVPVQLTVDFKPNLPYEAERIIQCKGRVFCLEDEPGVHRVWLP 179 (296)
Q Consensus 100 ~~~GtT~~~~~i~~~~l~~anvGDSr~~l~~~~~~g~~~~~~lt~dH~~~~~~E~~ri~~~gg~i~~~~~~~~~~rv~~~ 179 (296)
..+|||+++|++.++++||||.||||+++.| .| +++.++.||+|..+.|..||..+||++...
T Consensus 328 ~DSGtTAvVcLv~g~~liVANAGDSRcV~sr---~G--kAvdmS~DHKPEDevE~~RI~~AGG~vtlD------------ 390 (542)
T KOG0699|consen 328 EDSGTTAVVCLVGGDKLIVANAGDSRCVLSR---NG--KAVDMSVDHKPEDEVETNRIHAAGGQVTLD------------ 390 (542)
T ss_pred CCCCceEEEEEecCceEEEecCCCcceEEec---CC--ceeecccCCCcccHHHHHHHHhcCCeEeec------------
Confidence 3799999999999999999999999999998 56 679999999999999999999999999852
Q ss_pred CCCCCCcccccccCcccccccC--------ccccceeEEEEecCCCeEEEEecCCCCCCCCHHHHHHHHhcC----CChH
Q 022493 180 NEECPGLAMSRAFGDYCVKDYG--------LISVPEVTQRHITSRDQFVVLATDGVWDVISNQEAIQIVSST----PNRA 247 (296)
Q Consensus 180 ~~~~~~l~~tRalGd~~~k~~~--------v~~~Pdi~~~~l~~~d~fliL~SDGl~d~l~~~ei~~i~~~~----~~~~ 247 (296)
.|.+++|.+||+|||..||+.. |++-|||+...|.+.|.|+||+|||||++|+.+|++++++.. ....
T Consensus 391 GRVNGGLNLSRA~GDHaYK~N~~Lp~eEQMIsALPDiK~l~lTpedEFmVvACDGIWN~MsSqeVVdFvr~~l~~n~~ls 470 (542)
T KOG0699|consen 391 GRVNGGLNLSRAFGDHAYKKNQELPLEEQMISALPDIKILALTPEDEFMVVACDGIWNSMSSQEVVDFVRDLLAKNSSLS 470 (542)
T ss_pred ceecCccchhhhhhhhhhhcccCCChHHHHhhhcccceeEeecCcccEEEEEccchhhhccHHHHHHHHHHHHhcCchHH
Confidence 3448999999999999999865 788999999999999999999999999999999999998653 4567
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCceEEEEEEccCCCCCccc
Q 022493 248 KSAKRLVECAVHAWKRKRKGIAMDDISAICLFFHSSPLSQQV 289 (296)
Q Consensus 248 ~~a~~L~~~a~~~~~~~~~g~~~DNiTvivv~~~~~~~~~~~ 289 (296)
.+|..|++.++.-.- .-.|.++||||||++.|.......++
T Consensus 471 ~iceeL~D~CLAp~T-~GDGTGCDNMT~ii~~Fkrk~~elqp 511 (542)
T KOG0699|consen 471 EICEELCDACLAPST-DGDGTGCDNMTVIITTFKRKSKELQP 511 (542)
T ss_pred HHHHHHHHhhcCCCC-CCCCcCCCcceEEEEEeccchhhcCC
Confidence 899999999986321 12467899999999999966555543
No 9
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=100.00 E-value=1.7e-35 Score=282.96 Aligned_cols=222 Identities=22% Similarity=0.243 Sum_probs=152.4
Q ss_pred CeEEEEEeeCCCc--CcHHHHHHHHHHhHHHHHHHHHHHHHhhcCCCCCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHh
Q 022493 16 DMMFCGIFDGHGP--WGHFVAKKVRESMPSSLLCNWQETLAEASLLPDIDLDSDKKTHRFNIWKHSYVKTCAAVDQELEQ 93 (296)
Q Consensus 16 ~~~l~~V~DG~Gg--~G~~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 93 (296)
...+|+||||||| .|+.||+++.+.+.+++...+.. .. ...+.+++++..++..+.+.-.+
T Consensus 413 ~~~L~aVaDGmGGh~~GevAS~lAv~~L~~~~~~~~~~---------~~--------~~~~~L~~ai~~AN~~I~~~~~~ 475 (645)
T PRK14559 413 ARGLYILCDGMGGHAAGEVASALAVETLQQYFQQHWQD---------EL--------PDEETIREAIYLANEAIYDLNQQ 475 (645)
T ss_pred cceEEEEEeCCCCchhHHHHHHHHHHHHHHHHHhhhcc---------cc--------cHHHHHHHHHHHHHHHHHHHhhh
Confidence 3569999999995 34555555555555554432111 00 01124555555555555432222
Q ss_pred ccCCCCcCCcceEEEEEEECCeEEEEEeccCceEEEEecCCCceeEEEcCccCCCCChhhHHHHHHcCCeeEeecCCCCc
Q 022493 94 HRQIDSFYSGTTALTIVRQGEFIMVANVGDSRAVLATTSEDGSLVPVQLTVDFKPNLPYEAERIIQCKGRVFCLEDEPGV 173 (296)
Q Consensus 94 ~~~~~~~~~GtT~~~~~i~~~~l~~anvGDSr~~l~~~~~~g~~~~~~lt~dH~~~~~~E~~ri~~~gg~i~~~~~~~~~ 173 (296)
........||||++++++.++++|++||||||+|++++ +| ..+|||.||++... ..+.| +.......
T Consensus 476 ~~~~~~~~MGTTlv~alI~~~~l~ianVGDSRaYli~r--~g--~l~QLT~DHs~~~~-----lv~~G--i~~~~a~~-- 542 (645)
T PRK14559 476 NARSGSGRMGTTLVMALVQDTQVAVAHVGDSRLYRVTR--KG--GLEQLTVDHEVGQR-----EIQRG--VEPQIAYA-- 542 (645)
T ss_pred cccccCCCCCceeeeEEEECCEEEEEEecCceEEEEec--CC--eEEEeCCCCCHHHH-----HHHhC--CCHHHHhc--
Confidence 22223346999999999999999999999999999963 45 45999999997642 22233 11100000
Q ss_pred eeEecCCCCCCCcccccccCcccccccCccccceeEEEEecCCCeEEEEecCCCCCC--CCH---HHHHHHHhcCCChHH
Q 022493 174 HRVWLPNEECPGLAMSRAFGDYCVKDYGLISVPEVTQRHITSRDQFVVLATDGVWDV--ISN---QEAIQIVSSTPNRAK 248 (296)
Q Consensus 174 ~rv~~~~~~~~~l~~tRalGd~~~k~~~v~~~Pdi~~~~l~~~d~fliL~SDGl~d~--l~~---~ei~~i~~~~~~~~~ 248 (296)
..+...+||+||+...+. .+|++..+.+.++| +||||||||||+ +.. +++..++....++.+
T Consensus 543 --------~p~~~~LTrALG~~~~~~----l~Pdi~~~~L~~gD-~lLLCSDGL~D~~~ve~~~~~~l~~il~~~~~l~~ 609 (645)
T PRK14559 543 --------RPDAYQLTQALGPRDNSA----IQPDIQFLEIEEDT-LLLLCSDGLSDNDLLETHWQTHLLPLLSSSANLDQ 609 (645)
T ss_pred --------CcccceeeeccCCCCCCc----ccceEEEEEcCCCC-EEEEECCCCCCCcccchHHHHHHHHHHhcCCCHHH
Confidence 123458999999865432 36999999999877 789999999994 554 456677777778999
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCceEEEEEEccCCCCCc
Q 022493 249 SAKRLVECAVHAWKRKRKGIAMDDISAICLFFHSSPLSQ 287 (296)
Q Consensus 249 ~a~~L~~~a~~~~~~~~~g~~~DNiTvivv~~~~~~~~~ 287 (296)
++++|++.|+. +| +.||||+|||++...+...
T Consensus 610 aa~~Li~~Al~------~g-g~DNITvIvV~l~~~p~~~ 641 (645)
T PRK14559 610 GLNKLIDLANQ------YN-GHDNITAILVRLKVRPQLS 641 (645)
T ss_pred HHHHHHHHHHH------cC-CCCcEEEEEEEeccCCCCC
Confidence 99999999998 47 9999999999998766543
No 10
>cd00143 PP2Cc Serine/threonine phosphatases, family 2C, catalytic domain; The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence similarity.
Probab=100.00 E-value=3.3e-34 Score=249.50 Aligned_cols=220 Identities=39% Similarity=0.542 Sum_probs=179.7
Q ss_pred CeEEEEEeeCCCcCcHHHHHHHHHHhHHHHHHHHHHHHHhhcCCCCCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHhcc
Q 022493 16 DMMFCGIFDGHGPWGHFVAKKVRESMPSSLLCNWQETLAEASLLPDIDLDSDKKTHRFNIWKHSYVKTCAAVDQELEQHR 95 (296)
Q Consensus 16 ~~~l~~V~DG~Gg~G~~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 95 (296)
+..+|+|||||| |...++++++.+.+.+...+..... ...+.+...+.+++..+++++....
T Consensus 29 ~~~~~~V~DG~G--g~~~~~~as~~~~~~l~~~~~~~~~----------------~~~~~~~~~l~~~~~~~~~~l~~~~ 90 (254)
T cd00143 29 DGGLFGVFDGHG--GHAAGEFASKLLVEELLEELEETLT----------------LSEEDIEEALRKAFLRADEEILEEA 90 (254)
T ss_pred CcEEEEEEcCCC--hHHHHHHHHHHHHHHHHHHHhhccc----------------cchHHHHHHHHHHHHHHHHHHHHhh
Confidence 678999999999 8899999999999998865543211 0112555666677777777775543
Q ss_pred C--CCCcCCcceEEEEEEECCeEEEEEeccCceEEEEecCCCceeEEEcCccCCCCChhhHHHHHHcCCeeEeecCCCCc
Q 022493 96 Q--IDSFYSGTTALTIVRQGEFIMVANVGDSRAVLATTSEDGSLVPVQLTVDFKPNLPYEAERIIQCKGRVFCLEDEPGV 173 (296)
Q Consensus 96 ~--~~~~~~GtT~~~~~i~~~~l~~anvGDSr~~l~~~~~~g~~~~~~lt~dH~~~~~~E~~ri~~~gg~i~~~~~~~~~ 173 (296)
. .....+|||++++++.++.++++|+||||+|+++ ++ ..+++|.||++.++.++.|+...+|.+..
T Consensus 91 ~~~~~~~~~gtT~~~~~~~~~~l~~~~vGDsr~~~~~---~~--~~~~lt~dh~~~~~~~~~~i~~~~~~~~~------- 158 (254)
T cd00143 91 QDEPDDARSGTTAVVALIRGNKLYVANVGDSRAVLCR---NG--EAVQLTKDHKPVNEEERERIEKAGGRVSN------- 158 (254)
T ss_pred hhccCCCCCCCcEEEEEEECCEEEEEEecCcEEEEEc---CC--ceeEcCCCCCCcChHHHHHHHHcCCcEEe-------
Confidence 2 2335699999999999999999999999999997 34 45999999999999999999999887531
Q ss_pred eeEecCCCCCCCcccccccCcccccccCccccceeEEEEe-cCCCeEEEEecCCCCCCCCHHHHHHHHhcCC---ChHHH
Q 022493 174 HRVWLPNEECPGLAMSRAFGDYCVKDYGLISVPEVTQRHI-TSRDQFVVLATDGVWDVISNQEAIQIVSSTP---NRAKS 249 (296)
Q Consensus 174 ~rv~~~~~~~~~l~~tRalGd~~~k~~~v~~~Pdi~~~~l-~~~d~fliL~SDGl~d~l~~~ei~~i~~~~~---~~~~~ 249 (296)
....+...+||++|+..+|.. +.++|++..+++ .++| +|||||||||++++.++|.+++.... +++++
T Consensus 159 ------~~~~~~~~~t~~lG~~~~~~~-~~~~~~~~~~~l~~~~d-~ill~SDG~~~~l~~~~i~~~~~~~~~~~~~~~~ 230 (254)
T cd00143 159 ------GRVPGVLAVTRALGDFDLKPG-VSAEPDVTVVKLTEDDD-FLILASDGLWDVLSNQEAVDIVRSELAKEDLQEA 230 (254)
T ss_pred ------CEEcCceeeccccCCccccCC-EEcCCeEEEEEeCCCCc-EEEEECCCCeeccChHHHHHHHHHHhcccCHHHH
Confidence 011345689999999988844 788999999999 6666 79999999999999999999998876 79999
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCceEEEEEEc
Q 022493 250 AKRLVECAVHAWKRKRKGIAMDDISAICLFF 280 (296)
Q Consensus 250 a~~L~~~a~~~~~~~~~g~~~DNiTvivv~~ 280 (296)
|++|++.|.. +| +.||+|+||++|
T Consensus 231 a~~l~~~a~~------~~-~~Dn~t~i~~~~ 254 (254)
T cd00143 231 AQELVDLALR------RG-SHDNITVVVVRL 254 (254)
T ss_pred HHHHHHHHHh------CC-CCCCEEEEEEeC
Confidence 9999999998 46 999999999975
No 11
>smart00332 PP2Cc Serine/threonine phosphatases, family 2C, catalytic domain. The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence similarity.
Probab=100.00 E-value=4.7e-34 Score=249.01 Aligned_cols=218 Identities=37% Similarity=0.546 Sum_probs=174.9
Q ss_pred CCeEEEEEeeCCCcCcHHHHHHHHHHhHHHHHHHHHHHHHhhcCCCCCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHhc
Q 022493 15 ADMMFCGIFDGHGPWGHFVAKKVRESMPSSLLCNWQETLAEASLLPDIDLDSDKKTHRFNIWKHSYVKTCAAVDQELEQH 94 (296)
Q Consensus 15 ~~~~l~~V~DG~Gg~G~~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 94 (296)
.+..+|+|||||| |+.+|+++++.+.+.+......... ..+.+...+.+++..+++++...
T Consensus 32 ~~~~~~~v~DG~g--g~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~l~~~~~~~~~~~~~~ 92 (255)
T smart00332 32 DSGAFFGVFDGHG--GSEAAKFLSKNLPEILAEELIKHKD-----------------ELEDVEEALRKAFLKTDEEILEE 92 (255)
T ss_pred CCeEEEEEEeCCC--cHHHHHHHHHHHHHHHHHhHhhccc-----------------chhHHHHHHHHHHHHHHHHHHHh
Confidence 5688999999999 9999999999999887753222110 00134555566666666666543
Q ss_pred cCC--CCcCCcceEEEEEEECCeEEEEEeccCceEEEEecCCCceeEEEcCccCCCCChhhHHHHHHcCCeeEeecCCCC
Q 022493 95 RQI--DSFYSGTTALTIVRQGEFIMVANVGDSRAVLATTSEDGSLVPVQLTVDFKPNLPYEAERIIQCKGRVFCLEDEPG 172 (296)
Q Consensus 95 ~~~--~~~~~GtT~~~~~i~~~~l~~anvGDSr~~l~~~~~~g~~~~~~lt~dH~~~~~~E~~ri~~~gg~i~~~~~~~~ 172 (296)
... ....+|||++++++..+++|++|+||||+|+++ ++. .+++|.||++.++.|..|+...++.+...
T Consensus 93 ~~~~~~~~~~gtT~~~~~~~~~~l~~~~vGDsr~y~~~---~~~--~~~lt~dh~~~~~~~~~~i~~~~~~~~~~----- 162 (255)
T smart00332 93 LESLEEDAGSGSTAVVALISGNKLYVANVGDSRAVLCR---NGK--AVQLTEDHKPSNEDERARIEAAGGFVING----- 162 (255)
T ss_pred hhhccCCCCCCccEEEEEEECCEEEEEeccCceEEEEe---CCc--eeEcCCCCCCcCHHHHHHHHHcCCEEECC-----
Confidence 222 234689999999999999999999999999998 343 48999999999999999999998876521
Q ss_pred ceeEecCCCCCCCcccccccCcccccccCccccceeEEEEe-cCCCeEEEEecCCCCCCCCHHHHHHHHhcCC---ChHH
Q 022493 173 VHRVWLPNEECPGLAMSRAFGDYCVKDYGLISVPEVTQRHI-TSRDQFVVLATDGVWDVISNQEAIQIVSSTP---NRAK 248 (296)
Q Consensus 173 ~~rv~~~~~~~~~l~~tRalGd~~~k~~~v~~~Pdi~~~~l-~~~d~fliL~SDGl~d~l~~~ei~~i~~~~~---~~~~ 248 (296)
+..+...+||++|+..+|.. +.++|++...++ .++| +|||||||||++++.+++.+++.+.. ++.+
T Consensus 163 --------~~~~~~~lt~~~g~~~~~~~-i~~~p~~~~~~~~~~~d-~ill~SDGv~~~l~~~~i~~~~~~~~~~~~~~~ 232 (255)
T smart00332 163 --------RVNGVLALSRAIGDFFLKPY-VSAEPDVTVVELTEKDD-FLILASDGLWDVLSNQEVVDIVRKHLSKSDPEE 232 (255)
T ss_pred --------eECCeEecccccCCHhhcCC-eEeeeEEEEEEecCCCc-EEEEECCccccCCCHHHHHHHHHHHhhcCCHHH
Confidence 11334689999999988855 899999999997 6666 79999999999999999999998765 5999
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCceEEEEE
Q 022493 249 SAKRLVECAVHAWKRKRKGIAMDDISAICL 278 (296)
Q Consensus 249 ~a~~L~~~a~~~~~~~~~g~~~DNiTvivv 278 (296)
+|+.|++.|.. +| ..||+|+||+
T Consensus 233 ~~~~l~~~a~~------~~-~~Dn~T~ivv 255 (255)
T smart00332 233 AAKRLIDLALA------RG-SKDNITVIVV 255 (255)
T ss_pred HHHHHHHHHHH------cC-CCCCeEEEEC
Confidence 99999999998 46 9999999985
No 12
>KOG1323 consensus Serine/threonine phosphatase [Signal transduction mechanisms]
Probab=99.97 E-value=5.5e-29 Score=213.69 Aligned_cols=265 Identities=28% Similarity=0.383 Sum_probs=190.1
Q ss_pred cCCCCCeEEEEEeeCCCcCcHHHHHHHHHHhHHHHHHHHHHHHHh---hc----------------CCCCCCCcchhhhh
Q 022493 11 FGCQADMMFCGIFDGHGPWGHFVAKKVRESMPSSLLCNWQETLAE---AS----------------LLPDIDLDSDKKTH 71 (296)
Q Consensus 11 ~~~~~~~~l~~V~DG~Gg~G~~~s~~~~~~l~~~l~~~~~~~~~~---~~----------------~~~~~~~~~~~~~~ 71 (296)
|....++.+|.+||||. |..+|-.++..+.+++..++.+.... .. ..+....+.++.+.
T Consensus 138 ~a~~~~~~~~slfdgha--gs~~avvAsrll~~hI~~ql~~vvd~i~~~~~~~~~~~g~~~~~s~~s~~~~~~~~ek~Ir 215 (493)
T KOG1323|consen 138 FAPRADGALFSLFDGHA--GSAVAVVASRLLHRHIKEQLCEVVDTILHMDRHENLNFGKHRSESSYSMSEMSREDEKRIR 215 (493)
T ss_pred cCCCCcceeeeeecCCC--cchHHHHHHHHHHHhhhHHHHHHHHHHhhhccccccccccccccCCcccccccchhhccCc
Confidence 45567889999999999 88888888888888887766543322 00 01112222233344
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhccCCCCcCCcceEEEEEEECCeEEEEEeccCceEEEEecCCCceeEEEcCccCCCCCh
Q 022493 72 RFNIWKHSYVKTCAAVDQELEQHRQIDSFYSGTTALTIVRQGEFIMVANVGDSRAVLATTSEDGSLVPVQLTVDFKPNLP 151 (296)
Q Consensus 72 ~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~GtT~~~~~i~~~~l~~anvGDSr~~l~~~~~~g~~~~~~lt~dH~~~~~ 151 (296)
-...+..++..||+.+++++.+....-....|||+++++.--+++|+||.|||||+++|+ + .++.|+.+.+|..
T Consensus 216 ~E~LViGAlEsAFqemDeqiarer~~~~~~GGCtalvvi~llGKlYvaNAGDsRAIlVrn---d--eirplS~efTPet- 289 (493)
T KOG1323|consen 216 HEHLVIGALESAFQEMDEQIARERQVWRLPGGCTALVVIVLLGKLYVANAGDSRAILVRN---D--EIRPLSKEFTPET- 289 (493)
T ss_pred hHHhhHHHHHHHHHHHHHHHHHHHHhhcCCCCceEEEeeeeccceEEccCCCceEEEEec---C--CeeecccccCcHH-
Confidence 445678899999999999999877766778999999999999999999999999999984 4 4699999999986
Q ss_pred hhHHHHHHcC--------CeeEeecC----------CCCceeEe------------------------cCCCCCCCcccc
Q 022493 152 YEAERIIQCK--------GRVFCLED----------EPGVHRVW------------------------LPNEECPGLAMS 189 (296)
Q Consensus 152 ~E~~ri~~~g--------g~i~~~~~----------~~~~~rv~------------------------~~~~~~~~l~~t 189 (296)
||+|++..+ +.....+- ..-.+|-| .+.+..+.+.+|
T Consensus 290 -ERqRlQ~Laf~~PeLlgneFtrLEfprRl~~~dLgqrvLyRD~~MtGWayKtve~~DLr~pLI~gegrkaRll~TigVs 368 (493)
T KOG1323|consen 290 -ERQRLQELAFRNPELLGNEFTRLEFPRRLTIKDLGQRVLYRDWNMTGWAYKTVEEEDLRFPLISGEGRKARLLATIGVS 368 (493)
T ss_pred -HHHHHHHHhhcChHhhcccccceecccccChhhhcceeeeeccccccceeehhhhhcCCcceecccchhhhhhhhheec
Confidence 888887643 22222210 01112222 222334567899
Q ss_pred cccCcccccccC--------ccccceeEEEEecC----CCeEEEEecCCCCCCCCHHHHHHHHhcCC------Ch---HH
Q 022493 190 RAFGDYCVKDYG--------LISVPEVTQRHITS----RDQFVVLATDGVWDVISNQEAIQIVSSTP------NR---AK 248 (296)
Q Consensus 190 RalGd~~~k~~~--------v~~~Pdi~~~~l~~----~d~fliL~SDGl~d~l~~~ei~~i~~~~~------~~---~~ 248 (296)
|.|||..+|-.. +++.|+|++.++.+ .|+.+||+||||||+++++|+..++++.. +| ..
T Consensus 369 RGlGDH~Lkv~dsnl~iKPFLssvPeV~V~dl~q~e~~~DdVvilatDGLWDVlSneeva~~Vrs~L~~~dp~Dp~RYt~ 448 (493)
T KOG1323|consen 369 RGLGDHHLKVVDSNLSIKPFLSSVPEVRVYDLRQYEHLTDDVVILATDGLWDVLSNEEVALIVRSFLPSTDPADPSRYTQ 448 (493)
T ss_pred cccCcceeeeecCCcccchhhhcCCeeEEEehhhhccCCCcEEEEecCchhhhcccHHHHHHHHHhcCCCCCCChhHHHH
Confidence 999999876543 67899999999873 35589999999999999999999998752 23 45
Q ss_pred HHHHHHHHHHHHHHh-----hc--CCCCCCceEEEEEEccCCCC
Q 022493 249 SAKRLVECAVHAWKR-----KR--KGIAMDDISAICLFFHSSPL 285 (296)
Q Consensus 249 ~a~~L~~~a~~~~~~-----~~--~g~~~DNiTvivv~~~~~~~ 285 (296)
+|+.|+..|....+. .. -| +-|||||.||-+.....
T Consensus 449 aaqdlva~arg~~k~rgWr~~n~~lg-SgDDIsVfVIPL~~~~~ 491 (493)
T KOG1323|consen 449 AAQDLVAAARGQQKDRGWRMNNGGLG-SGDDISVFVIPLKYCAA 491 (493)
T ss_pred HHHHHHHHhcCccCCCceeccCCCcC-CCCceEEEEEeccCCCC
Confidence 677777776532111 11 13 78999999999987543
No 13
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.86 E-value=6e-21 Score=183.55 Aligned_cols=231 Identities=23% Similarity=0.289 Sum_probs=183.8
Q ss_pred ceeeeeecccCCCCCeEEEEEeeCCCcCcHHHHHHHHHHhHHHHHHHHHHHHHhhcCCCCCCCcchhhhhhHHHHHHHHH
Q 022493 2 CSFFVLEQEFGCQADMMFCGIFDGHGPWGHFVAKKVRESMPSSLLCNWQETLAEASLLPDIDLDSDKKTHRFNIWKHSYV 81 (296)
Q Consensus 2 ~~~~~~~~~~~~~~~~~l~~V~DG~Gg~G~~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 81 (296)
|++.+..++|.. +....||.+||=+ -.+..+++..++..++..+++....+. +. +.
T Consensus 537 c~~~~~v~nf~~-~~~a~~g~~dgs~--n~~v~~~vq~~ma~~L~eev~~~~~et-----------------~~----mr 592 (1081)
T KOG0618|consen 537 CSRAVWVENFFL-NPQATFGCFDGSR--NSRVLSLVQDTMASYLAEEVQLYGNET-----------------EQ----MR 592 (1081)
T ss_pred hhhhhhhhhccc-CCcceEEEEcCCC--chhHHHHHHHHHHHHHHHHHHhccChH-----------------HH----HH
Confidence 555666677765 4556889999998 889999999999999997765533211 12 66
Q ss_pred HHHHHHHHHHHhccCCCCcCCcceEEEEEEEC--------CeEEEEEeccCceEEEEecCCCceeEEEcCcc-CCCCChh
Q 022493 82 KTCAAVDQELEQHRQIDSFYSGTTALTIVRQG--------EFIMVANVGDSRAVLATTSEDGSLVPVQLTVD-FKPNLPY 152 (296)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~GtT~~~~~i~~--------~~l~~anvGDSr~~l~~~~~~g~~~~~~lt~d-H~~~~~~ 152 (296)
.+|..+++++.+.+.. -|..++.+.+.. ..+.+||+|+|.+++++.++ ..++|+- |...+++
T Consensus 593 ~~fl~~~rklg~~g~~----lg~~~~~~~i~~d~~~~asS~~l~~Anvg~c~avls~ng~-----~~p~t~~~~~~v~~e 663 (1081)
T KOG0618|consen 593 NTFLRLNRKLGEEGQV----LGGSVVLCQIVEDSLSPASSKTLFAANVGTCMAVLSRNGK-----PLPTTRSPMLEVDRE 663 (1081)
T ss_pred HHHHHHhhhhhhhhcc----ccchhhheeecccccCcccchhhhHhhhccchhhhhhcCC-----cCcccccccccCCHH
Confidence 6677788888665533 345555555543 37899999999999998432 2445444 3455899
Q ss_pred hHHHHHHcCCeeEeecCCCCceeEecCCCCCCCcccccccCcccccccCccccceeEEEEecCCCeEEEEecCCCCCCCC
Q 022493 153 EAERIIQCKGRVFCLEDEPGVHRVWLPNEECPGLAMSRAFGDYCVKDYGLISVPEVTQRHITSRDQFVVLATDGVWDVIS 232 (296)
Q Consensus 153 E~~ri~~~gg~i~~~~~~~~~~rv~~~~~~~~~l~~tRalGd~~~k~~~v~~~Pdi~~~~l~~~d~fliL~SDGl~d~l~ 232 (296)
|.+||..++|.|... +..+|.+..||++|.+...+. |.+.|+|....|.+.|+|||+|+-+||++|+
T Consensus 664 E~~RI~~~~g~i~ed------------~k~ngvt~~tR~iG~~~l~P~-v~p~Phv~~~~Lt~qdE~LIvgn~~lW~~Ls 730 (1081)
T KOG0618|consen 664 EYKRIVDSKGFITED------------NKLNGVTSSTRAIGPFSLFPH-VLPDPHVSVVILTEQDEFLIVGNKQLWSVLS 730 (1081)
T ss_pred HHHHHHHhcCeecCC------------Ceeeceeeeeeeccccccccc-ccCCCceeeEecccCceEEEEcchHHhhhcc
Confidence 999999999999842 222555789999999988886 9999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHHHHHhhcCCCCCCceEEEEEEccCCCC
Q 022493 233 NQEAIQIVSSTPNRAKSAKRLVECAVHAWKRKRKGIAMDDISAICLFFHSSPL 285 (296)
Q Consensus 233 ~~ei~~i~~~~~~~~~~a~~L~~~a~~~~~~~~~g~~~DNiTvivv~~~~~~~ 285 (296)
.+++++.+++..+|-.||++|++.|..+ | ..||++++||++....+
T Consensus 731 id~a~~~vRn~~dpL~AAkKL~d~AqSY------g-c~~nv~vlVv~l~~~~~ 776 (1081)
T KOG0618|consen 731 IDTAVDAVRNVEDPLLAAKKLCDLAQSY------G-CAENVSVLVVRLNHLEE 776 (1081)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHHHhc------c-cccCeeEEEEEeecchh
Confidence 9999999999999999999999999996 7 99999999999986544
No 14
>KOG1379 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=99.85 E-value=1.3e-19 Score=156.02 Aligned_cols=202 Identities=23% Similarity=0.345 Sum_probs=126.4
Q ss_pred CCeEEEEEeeCCCcC---cHHHHHHHHHHhHHHHHHHHHHHHHhhcCCCCCCCcchhhhhhHHHHHHHHHHHHHHHHHHH
Q 022493 15 ADMMFCGIFDGHGPW---GHFVAKKVRESMPSSLLCNWQETLAEASLLPDIDLDSDKKTHRFNIWKHSYVKTCAAVDQEL 91 (296)
Q Consensus 15 ~~~~l~~V~DG~Gg~---G~~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 91 (296)
+...+.|||||+||| |--.+.|..+.+ .. ..+........+. ++...|.+++. .+
T Consensus 101 ~~~~v~GVADGVGGWa~~GiDpg~fS~eLM-~~----ce~~v~~~~~~~~---------~P~~lL~~ay~----~l---- 158 (330)
T KOG1379|consen 101 PHAIVMGVADGVGGWAEYGIDPGAFSRELM-SN----CERLVQNSDFNPS---------DPVNLLEKAYA----EL---- 158 (330)
T ss_pred cccceEEEccccchHhhcCcCHHHHHHHHH-HH----HHHHhcccccCCC---------ChHHHHHHHHH----HH----
Confidence 466799999999973 544554443333 22 2222222222111 22234444333 23
Q ss_pred HhccCCCCcCCcceEEEEEEE--CCeEEEEEeccCceEEEEecCCCceeEEEcCcc--CCCCChhhHHHHHHcCCeeEee
Q 022493 92 EQHRQIDSFYSGTTALTIVRQ--GEFIMVANVGDSRAVLATTSEDGSLVPVQLTVD--FKPNLPYEAERIIQCKGRVFCL 167 (296)
Q Consensus 92 ~~~~~~~~~~~GtT~~~~~i~--~~~l~~anvGDSr~~l~~~~~~g~~~~~~lt~d--H~~~~~~E~~ri~~~gg~i~~~ 167 (296)
... ....-++||++++.+. +++||+||+|||-..++| +|+ +++-|.. |-.+.|.+..-.+.
T Consensus 159 ~~~--~~~~vGSSTAcI~~l~~~~~~Lh~aNLGDSGF~VvR---~G~--vv~~S~~Q~H~FN~PyQLs~~p~-------- 223 (330)
T KOG1379|consen 159 KSQ--KVPIVGSSTACILALDRENGKLHTANLGDSGFLVVR---EGK--VVFRSPEQQHYFNTPYQLSSPPE-------- 223 (330)
T ss_pred hhc--CCCCCCcceeeeeeeecCCCeEEEeeccCcceEEEE---CCE--EEEcCchheeccCCceeeccCCc--------
Confidence 111 1123478888888887 889999999999999998 564 3444433 44444333211110
Q ss_pred cCCCCceeEecCCCCCCCcccccccCcccccccCccccceeEEEEecCCCeEEEEecCCCCCCCCHHHHHHHHhcC----
Q 022493 168 EDEPGVHRVWLPNEECPGLAMSRAFGDYCVKDYGLISVPEVTQRHITSRDQFVVLATDGVWDVISNQEAIQIVSST---- 243 (296)
Q Consensus 168 ~~~~~~~rv~~~~~~~~~l~~tRalGd~~~k~~~v~~~Pdi~~~~l~~~d~fliL~SDGl~d~l~~~ei~~i~~~~---- 243 (296)
+. ...++| ....-+..++.+.++| .||||||||||+|.+++|..++...
T Consensus 224 -----------------~~--~~~~~d-------~p~~ad~~~~~v~~GD-vIilATDGlfDNl~e~~Il~il~~~~~~~ 276 (330)
T KOG1379|consen 224 -----------------GY--SSYISD-------VPDSADVTSFDVQKGD-VIILATDGLFDNLPEKEILSILKGLDARG 276 (330)
T ss_pred -----------------cc--cccccC-------CccccceEEEeccCCC-EEEEecccccccccHHHHHHHHHHhhccc
Confidence 00 111111 2223567889999999 6999999999999999999999653
Q ss_pred -CChHHHHHHHHHHHHHHHHhhc----------------CCCCCCceEEEEEEc
Q 022493 244 -PNRAKSAKRLVECAVHAWKRKR----------------KGIAMDDISAICLFF 280 (296)
Q Consensus 244 -~~~~~~a~~L~~~a~~~~~~~~----------------~g~~~DNiTvivv~~ 280 (296)
.+++..|++|++.|.+.+.+.. .|++.||||++|..+
T Consensus 277 ~~~lq~~A~~ia~~Ar~ls~d~~~~SPFA~~Ar~~g~~~~gGK~DdITvvls~v 330 (330)
T KOG1379|consen 277 NLDLQVTAQKIAEKARELSRDPKFQSPFAQAAREHGFKAYGGKPDDITVVLSSV 330 (330)
T ss_pred cccHHHHHHHHHHHHHHhccCcCcCChHHHHHHHhCcccCCCCcccEEEEEecC
Confidence 4689999999999987654322 244899999999753
No 15
>PF13672 PP2C_2: Protein phosphatase 2C; PDB: 2JFT_A 2JFS_A 2V06_A 2JFR_A 2J86_A 2J82_A 2Y09_A 2XZV_A 2CM1_A 1TXO_B ....
Probab=99.74 E-value=8.7e-18 Score=142.69 Aligned_cols=100 Identities=26% Similarity=0.306 Sum_probs=56.2
Q ss_pred CcCCcceEEEEEEECCeEEEEEeccCceEEEEecCCCceeEEEcCccCCCCChhhHHHHHHcCCeeEeecCCCCceeEec
Q 022493 99 SFYSGTTALTIVRQGEFIMVANVGDSRAVLATTSEDGSLVPVQLTVDFKPNLPYEAERIIQCKGRVFCLEDEPGVHRVWL 178 (296)
Q Consensus 99 ~~~~GtT~~~~~i~~~~l~~anvGDSr~~l~~~~~~g~~~~~~lt~dH~~~~~~E~~ri~~~gg~i~~~~~~~~~~rv~~ 178 (296)
...++||++++++.++.++++|+||||+|++.+ +|+ ...++.+|.. +..+.
T Consensus 94 ~~~~~tTl~~~v~~~~~~~~~~iGD~~i~~~~~--~g~--~~~l~~~~~~----~~~~~--------------------- 144 (212)
T PF13672_consen 94 LRDYGTTLLALVIDPDKVYIFNIGDSRIYVIRR--NGE--IQQLTDDHSG----EYPNQ--------------------- 144 (212)
T ss_dssp GTT-EE-EEEEEEETTEEEEEEESS-EEEEEEE--TTE--EEE-S---BH----HHHHC---------------------
T ss_pred ccccCceEEEEEEECCEEEEEEECCCeEEEEEC--CCE--EEEcCCCccc----hhhhh---------------------
Confidence 346899999999999999999999999987763 664 4888998861 11100
Q ss_pred CCCCCCCcccccccCcccccccCccccceeEEEEecCCCeEEEEecCCCCCCCCHHH-HHHHHhcC
Q 022493 179 PNEECPGLAMSRAFGDYCVKDYGLISVPEVTQRHITSRDQFVVLATDGVWDVISNQE-AIQIVSST 243 (296)
Q Consensus 179 ~~~~~~~l~~tRalGd~~~k~~~v~~~Pdi~~~~l~~~d~fliL~SDGl~d~l~~~e-i~~i~~~~ 243 (296)
++.+.... .....++..+++.+++. |+|||||||+.+...+ +..++.+.
T Consensus 145 ----------~~~~~~~~-----~~~~~~~~~~~~~~~d~-ilL~SDG~~~~l~~~~~~~~~l~~~ 194 (212)
T PF13672_consen 145 ----------TRSLTGDD-----PEPDVQYGSIPLEEGDV-ILLCSDGVWDNLRSYEDLEQFLKDL 194 (212)
T ss_dssp ----------TTSCCHHC-----CCTETEEEEEE--TT-E-EEEE-HHHHTTS-HHHHHHHH----
T ss_pred ----------hhccCccc-----cccCCeEEEEEcCCCCE-EEEECcCccccCCCHHHHHHHhhhc
Confidence 11111110 11123556677778885 7999999999998654 66777554
No 16
>smart00331 PP2C_SIG Sigma factor PP2C-like phosphatases.
Probab=99.73 E-value=3.7e-16 Score=130.70 Aligned_cols=162 Identities=19% Similarity=0.157 Sum_probs=112.9
Q ss_pred CCCeEEEEEeeCCCcCcHHHHHHHHHHhHHHHHHHHHHHHHhhcCCCCCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHh
Q 022493 14 QADMMFCGIFDGHGPWGHFVAKKVRESMPSSLLCNWQETLAEASLLPDIDLDSDKKTHRFNIWKHSYVKTCAAVDQELEQ 93 (296)
Q Consensus 14 ~~~~~l~~V~DG~Gg~G~~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 93 (296)
.++..+++|+|||| +...|.+++..+...+...+... ..+.+.+..+++.+..
T Consensus 27 ~~~~~~~~v~Dg~G--~G~~aa~~s~~~~~~~~~~~~~~-------------------------~~~~~~l~~~n~~l~~ 79 (193)
T smart00331 27 PEGRLLIAIADVMG--KGLAAALAMSMARSALRTLLSEG-------------------------ISLSQILERLNRAIYE 79 (193)
T ss_pred CCCeEEEEEEecCC--CChHHHHHHHHHHHHHHHHhhcC-------------------------CCHHHHHHHHHHHHHh
Confidence 34578999999999 77788888888877776543220 0122333445555554
Q ss_pred ccCCCCcCCcceEEEEEE--ECCeEEEEEeccCceEEEEecCCCceeEEEcCccCCCCChhhHHHHHHcCCeeEeecCCC
Q 022493 94 HRQIDSFYSGTTALTIVR--QGEFIMVANVGDSRAVLATTSEDGSLVPVQLTVDFKPNLPYEAERIIQCKGRVFCLEDEP 171 (296)
Q Consensus 94 ~~~~~~~~~GtT~~~~~i--~~~~l~~anvGDSr~~l~~~~~~g~~~~~~lt~dH~~~~~~E~~ri~~~gg~i~~~~~~~ 171 (296)
.. ...+|+|++++++ ..++++++|+||+|+|+++++ +.. .+.+.+.
T Consensus 80 ~~---~~~~~~T~~~~~id~~~~~l~~~~~Gd~~~~~~~~~--~~~--~~~~~~~------------------------- 127 (193)
T smart00331 80 NG---EDGMFATLFLALYDFAGGTLSYANAGHSPPYLLRAD--GGL--VEDLDDL------------------------- 127 (193)
T ss_pred cC---CCCcEEEEEEEEEECCCCEEEEEeCCCCceEEEECC--CCe--EEEcCCC-------------------------
Confidence 31 2358999999998 578999999999999999842 221 3333321
Q ss_pred CceeEecCCCCCCCcccccccCcccccccCccccceeEEEEecCCCeEEEEecCCCCCCCCHHHHHHHHhcC--CChHHH
Q 022493 172 GVHRVWLPNEECPGLAMSRAFGDYCVKDYGLISVPEVTQRHITSRDQFVVLATDGVWDVISNQEAIQIVSST--PNRAKS 249 (296)
Q Consensus 172 ~~~rv~~~~~~~~~l~~tRalGd~~~k~~~v~~~Pdi~~~~l~~~d~fliL~SDGl~d~l~~~ei~~i~~~~--~~~~~~ 249 (296)
++.+|.. ....++...+.+.++|. |+|+|||||+.++.+++.+++.+. .+++++
T Consensus 128 -----------------~~~lG~~------~~~~~~~~~~~l~~gd~-l~l~TDGl~e~~~~~~l~~~l~~~~~~~~~~~ 183 (193)
T smart00331 128 -----------------GAPLGLE------PDVEVDVRELTLEPGDL-LLLYTDGLTEARNPERLEELLEELLGSPPAEI 183 (193)
T ss_pred -----------------CceeeeC------CCCcceeEEEeeCCCCE-EEEECCCccccCChHHHHHHHHHhcCCCHHHH
Confidence 2344422 12236677888999995 899999999999999999999875 358888
Q ss_pred HHHHHHHHH
Q 022493 250 AKRLVECAV 258 (296)
Q Consensus 250 a~~L~~~a~ 258 (296)
+++|.+.+.
T Consensus 184 ~~~i~~~~~ 192 (193)
T smart00331 184 AQRILEELL 192 (193)
T ss_pred HHHHHHHHh
Confidence 888877654
No 17
>TIGR02865 spore_II_E stage II sporulation protein E. Stage II sporulation protein E (SpoIIE) is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation. By means of it protein phosphatase activity, located in the C-terminal region, it activates sigma-F. All proteins that score above the trusted cutoff to this model are found in endospore-forming Gram-positive bacteria. Surprisingly, a sequence from the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis is homologous, and scores between the trusted and noise cutoffs.
Probab=99.54 E-value=5.5e-13 Score=132.32 Aligned_cols=178 Identities=18% Similarity=0.137 Sum_probs=116.4
Q ss_pred CCCeEEEEEeeCCCcCcHHHHHHHHHHhHHHHHHHHHHHHHhhcCCCCCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHh
Q 022493 14 QADMMFCGIFDGHGPWGHFVAKKVRESMPSSLLCNWQETLAEASLLPDIDLDSDKKTHRFNIWKHSYVKTCAAVDQELEQ 93 (296)
Q Consensus 14 ~~~~~l~~V~DG~Gg~G~~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 93 (296)
.++..+++|+||+|+ |. .|..++..+.+.+.+.+.. .. ..+.++ ..++..+..
T Consensus 577 ~~g~~~~~laDGmGh-G~-~Aa~~S~~~~~ll~~~~~~-----g~----------------~~~~ai----~~lN~~L~~ 629 (764)
T TIGR02865 577 SAGKYAVAISDGMGS-GP-EAAQESSACVRLLEKFLES-----GF----------------DREVAI----KTVNSILSL 629 (764)
T ss_pred CCCEEEEEEEcccCC-CH-HHHHHHHHHHHHHHHHHHc-----CC----------------CHHHHH----HHHHHHHHh
Confidence 355678999999993 44 4445565555555432211 00 112222 334444433
Q ss_pred ccCCCCcCCcceEEEEEEE--CCeEEEEEeccCceEEEEecCCCceeEEEcCccCCCCChhhHHHHHHcCCeeEeecCCC
Q 022493 94 HRQIDSFYSGTTALTIVRQ--GEFIMVANVGDSRAVLATTSEDGSLVPVQLTVDFKPNLPYEAERIIQCKGRVFCLEDEP 171 (296)
Q Consensus 94 ~~~~~~~~~GtT~~~~~i~--~~~l~~anvGDSr~~l~~~~~~g~~~~~~lt~dH~~~~~~E~~ri~~~gg~i~~~~~~~ 171 (296)
.. ...+.+|+.+++++ .+++.++|+|+++.|+.| ++ .+.+++..+-|
T Consensus 630 ~~---~~~~faTl~l~~IDl~~g~~~~~~aG~~p~~i~r---~~--~v~~i~s~~lP----------------------- 678 (764)
T TIGR02865 630 RS---TDEKFSTLDLSVIDLYTGQAEFVKVGAVPSFIKR---GA--KVEVIRSSNLP----------------------- 678 (764)
T ss_pred CC---CCCeEEEEEEEEEECCCCeEEEEecCCCceEEEE---CC--EEEEecCCCce-----------------------
Confidence 21 12368999998886 689999999999999986 34 34555433222
Q ss_pred CceeEecCCCCCCCcccccccCcccccccCccccceeEEEEecCCCeEEEEecCCCCCCCCHHH-----HHHHHhc--CC
Q 022493 172 GVHRVWLPNEECPGLAMSRAFGDYCVKDYGLISVPEVTQRHITSRDQFVVLATDGVWDVISNQE-----AIQIVSS--TP 244 (296)
Q Consensus 172 ~~~rv~~~~~~~~~l~~tRalGd~~~k~~~v~~~Pdi~~~~l~~~d~fliL~SDGl~d~l~~~e-----i~~i~~~--~~ 244 (296)
+|-. -..+++....++.++| +|+++|||+||..+.++ +.+++.+ ..
T Consensus 679 --------------------lGil------~~~~~~~~~~~L~~GD-~Lll~SDGv~E~~~~~~~~~~~l~~~l~~~~~~ 731 (764)
T TIGR02865 679 --------------------IGIL------DEVDVELVRKKLKNGD-LIVMVSDGVLEGEKEVEGKVLWLVRKLKETNTN 731 (764)
T ss_pred --------------------eEec------cCCccceEEEEeCCCC-EEEEECCCCCcCCcccccHHHHHHHHHHhcCCC
Confidence 1100 1123666788899999 58999999999886433 7777765 35
Q ss_pred ChHHHHHHHHHHHHHHHHhhcCCCCCCceEEEEEEc
Q 022493 245 NRAKSAKRLVECAVHAWKRKRKGIAMDDISAICLFF 280 (296)
Q Consensus 245 ~~~~~a~~L~~~a~~~~~~~~~g~~~DNiTvivv~~ 280 (296)
+|+++++.|++.+.... .|...||+|++++++
T Consensus 732 ~p~ela~~Il~~a~~~~----~~~~~DD~Tvlvirv 763 (764)
T TIGR02865 732 DPEEIAEYLLEKAKELR----SGKIKDDMTVIVAKV 763 (764)
T ss_pred CHHHHHHHHHHHHHHhc----CCCCCCCeEEEEEEe
Confidence 79999999999998751 123589999999986
No 18
>PF07228 SpoIIE: Stage II sporulation protein E (SpoIIE); InterPro: IPR001932 This domain is found in protein phosphatase 2C, as well as other proteins eg. pyruvate dehydrogenase (lipoamide)-phosphatase (3.1.3.43 from EC), adenylate cyclase (4.6.1.1 from EC) and some bacterial stage II sporulation E proteins (3.1.3.16 from EC). Protein phosphatase 2C (PP2C) is one of the four major classes of mammalian serine/threonine specific protein phosphatases (3.1.3.16 from EC). PP2C [] is a monomeric enzyme of about 42 Kd which shows broad substrate specificity and is dependent on divalent cations (mainly manganese and magnesium) for its activity. Its exact physiological role is still unclear. Three isozymes are currently known in mammals: PP2C-alpha, -beta and -gamma. In yeast, there are at least four PP2C homologs: phosphatase PTC1 [], which has weak tyrosine phosphatase activity in addition to its activity on serines, phosphatases PTC2 and PTC3, and hypothetical protein YBR125c. Isozymes of PP2C are also known from Arabidopsis thaliana (ABI1, PPH1), Caenorhabditis elegans (FEM-2, F42G9.1, T23F11.1), Leishmania chagasi and Paramecium tetraurelia. In A. thaliana, the kinase associated protein phosphatase (KAPP) [] is an enzyme that dephosphorylates the Ser/Thr receptor-like kinase RLK5 and which contains a C-terminal PP2C domain. PP2C does not seem to be evolutionary related to the main family of serine/ threonine phosphatases: PP1, PP2A and PP2B. However, it is significantly similar to the catalytic subunit of pyruvate dehydrogenase phosphatase 3.1.3.43 from EC (PDPC) [], which catalyzes dephosphorylation and concomitant reactivation of the alpha subunit of the E1 component of the pyruvate dehydrogenase complex. PDPC is a mitochondrial enzyme and, like PP2C, is magnesium-dependent.; GO: 0003824 catalytic activity; PDB: 3KE6_B 3ZT9_A 3RNR_A 3EQ2_A 3F7A_B 3F79_A 3ES2_B 3PU9_B 3T91_B 3T9Q_B ....
Probab=99.49 E-value=9e-12 Score=103.97 Aligned_cols=181 Identities=18% Similarity=0.165 Sum_probs=109.5
Q ss_pred CCeEEEEEeeCCCcCcHHHHHHHHHHhHHHHHHHHHHHHHhhcCCCCCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHhc
Q 022493 15 ADMMFCGIFDGHGPWGHFVAKKVRESMPSSLLCNWQETLAEASLLPDIDLDSDKKTHRFNIWKHSYVKTCAAVDQELEQH 94 (296)
Q Consensus 15 ~~~~l~~V~DG~Gg~G~~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 94 (296)
++.+++.|+|++| -...|.+.+..+...+........ .. .+....+++.+...
T Consensus 2 ~~~~~~~v~D~~G--hG~~aa~~~~~~~~~~~~~~~~~~---------------------~p----~~~l~~ln~~l~~~ 54 (193)
T PF07228_consen 2 DGRYFIIVGDVSG--HGVSAALLSAALASAIRELLDEGL---------------------DP----EELLEALNRRLYRD 54 (193)
T ss_dssp TTEEEEEEEEESS--SSHHHHHHHHHHHHHHHHHHHTTT---------------------SH----HHHHHHHHHHHHHH
T ss_pred CCEEEEEEEEecC--CCHHHHHHHHHHHHHHHHHHHcCC---------------------CH----HHHHHHHHHHHHHH
Confidence 5678999999999 334555666666666554321110 12 22233444444332
Q ss_pred cCCCCcCCcceEEEEEEE--CCeEEEEEeccCceEEEEecCCCceeEEEcCccCCCCChhhHHHHHHcCCeeEeecCCCC
Q 022493 95 RQIDSFYSGTTALTIVRQ--GEFIMVANVGDSRAVLATTSEDGSLVPVQLTVDFKPNLPYEAERIIQCKGRVFCLEDEPG 172 (296)
Q Consensus 95 ~~~~~~~~GtT~~~~~i~--~~~l~~anvGDSr~~l~~~~~~g~~~~~~lt~dH~~~~~~E~~ri~~~gg~i~~~~~~~~ 172 (296)
.... ...+|++++.++ .+.++++|+|++++++++..+ + ....+.....|
T Consensus 55 ~~~~--~~~~t~~~~~~d~~~~~l~~~~aG~~~~l~~~~~~-~--~~~~~~~~~~~------------------------ 105 (193)
T PF07228_consen 55 LKGD--NRYATACYAIIDPETGTLTYANAGHPPPLLLRPGG-R--EIEQLESEGPP------------------------ 105 (193)
T ss_dssp TTTT--STTEEEEEEEEETTTTEEEEEEESSSEEEEEETTC-T--EEEEETCSSBB------------------------
T ss_pred hhhc--cccceEEEEEecccceEEEEeCCCCCCEEEEeccc-c--ceeecccCccc------------------------
Confidence 2111 367888888876 668999999999999998532 2 22333222111
Q ss_pred ceeEecCCCCCCCcccccccCcccccccCccccceeEEEEecCCCeEEEEecCCCCCCCCHH-------HHHHHHhc--C
Q 022493 173 VHRVWLPNEECPGLAMSRAFGDYCVKDYGLISVPEVTQRHITSRDQFVVLATDGVWDVISNQ-------EAIQIVSS--T 243 (296)
Q Consensus 173 ~~rv~~~~~~~~~l~~tRalGd~~~k~~~v~~~Pdi~~~~l~~~d~fliL~SDGl~d~l~~~-------ei~~i~~~--~ 243 (296)
+|-. ....+...++++.++|. |+|+||||++....+ ++.+++.+ .
T Consensus 106 -------------------lG~~------~~~~~~~~~~~l~~gd~-l~l~TDGl~e~~~~~~~~~~~~~~~~~l~~~~~ 159 (193)
T PF07228_consen 106 -------------------LGIF------EDIDYQEQEIQLEPGDR-LLLYTDGLFEALNEDGEFFGEERLLELLDENRG 159 (193)
T ss_dssp -------------------CSSS------CTTCEEEEEEE--TTEE-EEEECHHHCTTTCHHCHHCCCHHHHHHHHCHTT
T ss_pred -------------------eeee------ccccccceEEEeccccE-EEEeCCChhhccCCccchhHHHHHHHHHhhccC
Confidence 2211 01234456788889995 899999999998543 44566663 3
Q ss_pred CChHHHHHHHHHHHHHHHHhhcCCCCCCceEEEEEEcc
Q 022493 244 PNRAKSAKRLVECAVHAWKRKRKGIAMDDISAICLFFH 281 (296)
Q Consensus 244 ~~~~~~a~~L~~~a~~~~~~~~~g~~~DNiTvivv~~~ 281 (296)
.+++++++.|.+.+... ..+...||+|+++++++
T Consensus 160 ~~~~~~~~~l~~~~~~~----~~~~~~DD~tvl~~~~~ 193 (193)
T PF07228_consen 160 LSPQEIIDALLEAIDRF----GKGPLRDDITVLVIRRQ 193 (193)
T ss_dssp S-HHHHHHHHHHHHHHH----TTSSTSS-EEEEEEEE-
T ss_pred CCHHHHHHHHHHHHHHh----cCCCCCCceEEEEEEEC
Confidence 56788888888888762 12358999999999874
No 19
>COG2208 RsbU Serine phosphatase RsbU, regulator of sigma subunit [Signal transduction mechanisms / Transcription]
Probab=98.48 E-value=2.4e-05 Score=72.02 Aligned_cols=181 Identities=22% Similarity=0.211 Sum_probs=110.8
Q ss_pred CCeEEEEEeeCCCcCcHHHHHHHHHHhHHHHHHHHHHHHHhhcCCCCCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHhc
Q 022493 15 ADMMFCGIFDGHGPWGHFVAKKVRESMPSSLLCNWQETLAEASLLPDIDLDSDKKTHRFNIWKHSYVKTCAAVDQELEQH 94 (296)
Q Consensus 15 ~~~~l~~V~DG~Gg~G~~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 94 (296)
.....++|.|.+|. |-.++-. ...+....+.+... ... .. .+..+.+++-++.+
T Consensus 173 ~~~~~i~I~DvsG~-Gv~aal~--m~~~~~~~~~~~~~---~~~----------------~p----~~~l~~~n~~~~~~ 226 (367)
T COG2208 173 EKRLRIGIGDVSGK-GVPAALL--MLMPKLALRLLLES---GPL----------------DP----ADVLETLNRVLKQN 226 (367)
T ss_pred CcEEEEEEEeccCC-CHHHHHH--HHHHHHHHHHhhhc---ccC----------------CH----HHHHHHHHHHHHhc
Confidence 36788999999984 6555544 22333333221111 000 11 12233445555544
Q ss_pred cCCCCcCCcceEEEEEEE--CCeEEEEEeccCceEEEEecCCCceeEEEcCccCCCCChhhHHHHHHcCCeeEeecCCCC
Q 022493 95 RQIDSFYSGTTALTIVRQ--GEFIMVANVGDSRAVLATTSEDGSLVPVQLTVDFKPNLPYEAERIIQCKGRVFCLEDEPG 172 (296)
Q Consensus 95 ~~~~~~~~GtT~~~~~i~--~~~l~~anvGDSr~~l~~~~~~g~~~~~~lt~dH~~~~~~E~~ri~~~gg~i~~~~~~~~ 172 (296)
...+ +=+|+..++++ ...+..+|+|---+++.+.+++. ....+.
T Consensus 227 ~~~~---~f~T~~~~~~d~~~~~l~y~~aGH~p~~i~~~~~~~--~~~~l~----------------------------- 272 (367)
T COG2208 227 LEED---MFVTLFLGVYDLDSGELTYSNAGHEPALILSADGEI--EVEDLT----------------------------- 272 (367)
T ss_pred ccCC---cEEEEEEEEEeccCCEEEEeeCCCCCeeEEEcCCCc--eeEEcc-----------------------------
Confidence 3222 66777777765 77999999999999998743211 011111
Q ss_pred ceeEecCCCCCCCcccccccCcccccccCccc--cceeEEEEecCCCeEEEEecCCCCC-------CCCHHHHHHHHhc-
Q 022493 173 VHRVWLPNEECPGLAMSRAFGDYCVKDYGLIS--VPEVTQRHITSRDQFVVLATDGVWD-------VISNQEAIQIVSS- 242 (296)
Q Consensus 173 ~~rv~~~~~~~~~l~~tRalGd~~~k~~~v~~--~Pdi~~~~l~~~d~fliL~SDGl~d-------~l~~~ei~~i~~~- 242 (296)
.....+| +.+ .+.+...++.++| .+++.|||+.+ .+..+....++..
T Consensus 273 --------------~~g~piG--------~~~~~~~~~~~~~l~~gd-~lvl~tDGv~Ea~~~~~~~~~~~~~~~~~~~~ 329 (367)
T COG2208 273 --------------ALGLPIG--------LLPDYQYEVASLQLEPGD-LLVLYTDGVTEARNSDGEFFGLERLLKILGRL 329 (367)
T ss_pred --------------CCCceee--------ecCCccchheeEEecCCC-EEEEEcCCeeeeecCCccEecHHHHHHHHHHH
Confidence 2233444 333 3556678888988 68999999998 4456666777763
Q ss_pred -CCChHHHHHHHHHHHHHHHHhhcCCCCCCceEEEEEEcc
Q 022493 243 -TPNRAKSAKRLVECAVHAWKRKRKGIAMDDISAICLFFH 281 (296)
Q Consensus 243 -~~~~~~~a~~L~~~a~~~~~~~~~g~~~DNiTvivv~~~ 281 (296)
..+++++++.+.+......... ...||+|++++++.
T Consensus 330 ~~~~~~e~~~~i~~~l~~~~~~~---~~~DDiTll~lk~~ 366 (367)
T COG2208 330 LGQPAEEILEAILESLEELQGDQ---IQDDDITLLVLKVK 366 (367)
T ss_pred hCCCHHHHHHHHHHHHHHhhCCc---cccCceEEEEEEec
Confidence 3468888888888888764333 26788999999975
No 20
>PRK10693 response regulator of RpoS; Provisional
Probab=78.89 E-value=24 Score=31.40 Aligned_cols=41 Identities=12% Similarity=0.022 Sum_probs=27.5
Q ss_pred HHHHHHHHHhccCCCCcCCcceEEEEEEE--CCeEEEEEeccCceEE
Q 022493 84 CAAVDQELEQHRQIDSFYSGTTALTIVRQ--GEFIMVANVGDSRAVL 128 (296)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~GtT~~~~~i~--~~~l~~anvGDSr~~l 128 (296)
...+++.+.+.... . --|++.++++ .+.+.++|.|-...++
T Consensus 211 l~~lN~~l~~~~~~-~---~~t~~~~~~d~~~~~l~~~~AGhp~~~~ 253 (303)
T PRK10693 211 LKQVNHLLRQANLP-G---QFPLLVGYYHRELKNLILVSAGLNATLN 253 (303)
T ss_pred HHHHHHHHHhcCCC-c---eeeEEEEEEEcCCCeEEEEeCCCCCEEe
Confidence 34566666654211 1 2477777776 5689999999999884
No 21
>PF09436 DUF2016: Domain of unknown function (DUF2016); InterPro: IPR018560 This entry represents the N-terminal of proteins that contain a ubiquitin domain.
Probab=45.71 E-value=13 Score=25.64 Aligned_cols=17 Identities=18% Similarity=0.460 Sum_probs=13.3
Q ss_pred CCCeEEEEecCCCCCCCC
Q 022493 215 SRDQFVVLATDGVWDVIS 232 (296)
Q Consensus 215 ~~d~fliL~SDGl~d~l~ 232 (296)
+|.+ +++++||+|=.+.
T Consensus 26 ~G~R-llva~nGv~lEv~ 42 (72)
T PF09436_consen 26 PGHR-LLVASNGVFLEVR 42 (72)
T ss_pred CCcE-EEEecCcEEEEEe
Confidence 5676 6999999996553
No 22
>PF06972 DUF1296: Protein of unknown function (DUF1296); InterPro: IPR009719 This family represents a conserved region approximately 60 residues long within a number of plant proteins of unknown function.
Probab=38.51 E-value=43 Score=22.07 Aligned_cols=25 Identities=16% Similarity=0.292 Sum_probs=21.6
Q ss_pred CCHHHHHHHHhcC-CChHHHHHHHHH
Q 022493 231 ISNQEAIQIVSST-PNRAKSAKRLVE 255 (296)
Q Consensus 231 l~~~ei~~i~~~~-~~~~~~a~~L~~ 255 (296)
-+.+||...+..+ .+|.+++++|+.
T Consensus 19 hse~eIya~L~ecnMDpnea~qrLL~ 44 (60)
T PF06972_consen 19 HSEEEIYAMLKECNMDPNEAVQRLLS 44 (60)
T ss_pred CCHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 5789999999876 589999999987
No 23
>COG2168 DsrH Uncharacterized conserved protein involved in oxidation of intracellular sulfur [Inorganic ion transport and metabolism]
Probab=37.47 E-value=28 Score=25.37 Aligned_cols=32 Identities=25% Similarity=0.467 Sum_probs=25.4
Q ss_pred EEecCCCeEEEEecCCCCCCCCHHHHHHHHhcC
Q 022493 211 RHITSRDQFVVLATDGVWDVISNQEAIQIVSST 243 (296)
Q Consensus 211 ~~l~~~d~fliL~SDGl~d~l~~~ei~~i~~~~ 243 (296)
.-+.++|. ++|+.|||+-.+...+...-++..
T Consensus 20 ~~l~~~D~-vlL~qdGV~aAl~~~~~~~sl~~~ 51 (96)
T COG2168 20 RLLTEGDA-VLLLQDGVYAALKGNRYLASLRES 51 (96)
T ss_pred HHhcccCe-EEEEcccchhhhcCcHHHHHHhcC
Confidence 34567887 799999999999887777777665
No 24
>PRK06369 nac nascent polypeptide-associated complex protein; Reviewed
Probab=28.50 E-value=2.2e+02 Score=21.53 Aligned_cols=43 Identities=12% Similarity=0.216 Sum_probs=33.7
Q ss_pred ccccceeEEEEecCCCeEEEEecCCCCC-------CCCHHHHHHHHhcCC
Q 022493 202 LISVPEVTQRHITSRDQFVVLATDGVWD-------VISNQEAIQIVSSTP 244 (296)
Q Consensus 202 v~~~Pdi~~~~l~~~d~fliL~SDGl~d-------~l~~~ei~~i~~~~~ 244 (296)
+...|+|...+....+.|.|.+..-.-+ .++.++|.-+..+..
T Consensus 39 Vi~~P~V~~m~~~g~~tY~I~Ge~~~e~~~~~~~~~i~~edI~lv~~q~g 88 (115)
T PRK06369 39 VFENPQVTVMDAQGQKTYQIVGEPEEVEKEAEKEVEIPEEDIELVAEQTG 88 (115)
T ss_pred EEcCCeEEEEecCCCcEEEEEeccEEeeccccccCCCCHHHHHHHHHHHC
Confidence 7788999998888888898888877754 467778777777664
No 25
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=28.09 E-value=1.1e+02 Score=16.44 Aligned_cols=20 Identities=30% Similarity=0.363 Sum_probs=15.4
Q ss_pred EEECCeEEEEEeccCceEEE
Q 022493 110 VRQGEFIMVANVGDSRAVLA 129 (296)
Q Consensus 110 ~i~~~~l~~anvGDSr~~l~ 129 (296)
+-.++.+|++-.|..|+..+
T Consensus 9 v~~~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 9 VDSDGNIYVADSGNHRVQVF 28 (28)
T ss_dssp EETTSEEEEEECCCTEEEEE
T ss_pred EeCCCCEEEEECCCCEEEEC
Confidence 34788999999888887653
No 26
>PRK15322 invasion protein OrgB; Provisional
Probab=23.86 E-value=2.1e+02 Score=24.00 Aligned_cols=80 Identities=9% Similarity=0.109 Sum_probs=48.3
Q ss_pred CceeEecCCCCCCC-cccccccCcccccccCccccceeEEEEecCCCeEEEEecCCCCCCCCHHHHHHHHhc----CCC-
Q 022493 172 GVHRVWLPNEECPG-LAMSRAFGDYCVKDYGLISVPEVTQRHITSRDQFVVLATDGVWDVISNQEAIQIVSS----TPN- 245 (296)
Q Consensus 172 ~~~rv~~~~~~~~~-l~~tRalGd~~~k~~~v~~~Pdi~~~~l~~~d~fliL~SDGl~d~l~~~ei~~i~~~----~~~- 245 (296)
++.++|++...... ..+-+-|++.+- .-..+...++.+| |+||+----.+++++.++...+ ..+
T Consensus 111 ~pL~l~lP~~ak~~~~~L~~~l~e~w~---------~~~~i~yhd~~rF-V~~~g~qIaEFsPq~~v~~a~~~l~~~~d~ 180 (210)
T PRK15322 111 GQLFLTLPVNAKKDHQKLMVLLMENWP---------GTFNLKYHQEQRF-IMSCGDQIAEFSPEQFVETAVGVIKHHLDE 180 (210)
T ss_pred CceeEecChhhhhhHHHHHHHHHHhcC---------CCeEEEEcCCCce-EEEeCCchhccCHHHHHHHHHHHHHhCccc
Confidence 45555554433222 345555555321 1112444566665 8888888888999988776543 233
Q ss_pred hHHHHHHHHHHHHHHH
Q 022493 246 RAKSAKRLVECAVHAW 261 (296)
Q Consensus 246 ~~~~a~~L~~~a~~~~ 261 (296)
....|+.|-+.++...
T Consensus 181 ~~~~~r~ls~~~l~al 196 (210)
T PRK15322 181 LPQDCRTISDNAINAL 196 (210)
T ss_pred hHHHHHHHhHHHHHHH
Confidence 6778888888887643
No 27
>COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism]
Probab=23.26 E-value=48 Score=30.64 Aligned_cols=32 Identities=19% Similarity=0.243 Sum_probs=24.6
Q ss_pred EEEEEeccCceEEEEecCCCceeEEEcCccCCCCChhhHHHH
Q 022493 116 IMVANVGDSRAVLATTSEDGSLVPVQLTVDFKPNLPYEAERI 157 (296)
Q Consensus 116 l~~anvGDSr~~l~~~~~~g~~~~~~lt~dH~~~~~~E~~ri 157 (296)
...+|+||+|-.++ .+-|+-|...+++|+...
T Consensus 365 s~laNvGD~rsLvI----------HPAsTTH~ql~~ee~~~a 396 (426)
T COG2873 365 SHLANIGDARSLVI----------HPASTTHRQLSEEEQAAA 396 (426)
T ss_pred HhhccccccceeEe----------cCcccchhcCCHHHHHhc
Confidence 47899999998887 456778887887776544
No 28
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=21.80 E-value=1.1e+02 Score=17.50 Aligned_cols=18 Identities=22% Similarity=0.381 Sum_probs=15.0
Q ss_pred CCeEEEEEeccCceEEEE
Q 022493 113 GEFIMVANVGDSRAVLAT 130 (296)
Q Consensus 113 ~~~l~~anvGDSr~~l~~ 130 (296)
++.+|++|-|+..+.++.
T Consensus 3 ~~~lyv~~~~~~~v~~id 20 (42)
T TIGR02276 3 GTKLYVTNSGSNTVSVID 20 (42)
T ss_pred CCEEEEEeCCCCEEEEEE
Confidence 567999999988888875
No 29
>PF05785 CNF1: Rho-activating domain of cytotoxic necrotizing factor; InterPro: IPR008430 This entry represents several bacterial cytotoxic necrotizing factor proteins as well as related dermonecrotic toxin (DNT) from Bordetella species. Cytotoxic necrotizing factor 1 (CNF1) is a toxin whose structure from Escherichia coli revealed a 4-layer alpha/beta/beta/alpha structure containing mixed beta-sheets []. CNF1 is expressed in strains of E. coli causing uropathogenic and neonatal meningitis. CNF1 alters host cell actin cytoskeleton and promotes bacterial invasion of the blood-brain barrier endothelial cells []. CNF1 belongs to a unique group of large cytotoxins that cause constitutive activation of Rho guanosine triphosphatases (GTPases), which are key regulators of the actin cytoskeleton []. Bordetella dermonecrotic toxin (DNT) stimulates the assembly of actin stress fibres and focal adhesions by deamidating or polyaminating Gln63 of the small GTPase Rho. DNT is an A-B toxin composed of an N-terminal receptor-binding (B) domain and a C-terminal enzymatically active (A) domain [].; PDB: 1HZG_A 1HQ0_A.
Probab=21.27 E-value=1.3e+02 Score=26.65 Aligned_cols=25 Identities=24% Similarity=0.399 Sum_probs=18.6
Q ss_pred CcCCcceEEEEEEECCeEEEEEeccC
Q 022493 99 SFYSGTTALTIVRQGEFIMVANVGDS 124 (296)
Q Consensus 99 ~~~~GtT~~~~~i~~~~l~~anvGDS 124 (296)
+..+|||.+++ +.++.+|..|+|-+
T Consensus 129 G~LSGCT~i~A-~K~~~~y~~HtGk~ 153 (281)
T PF05785_consen 129 GALSGCTMIYA-RKDNYFYAYHTGKS 153 (281)
T ss_dssp --BSS-EEEEE-EETTEEEEEEEEES
T ss_pred CccCCCEEEEE-EcCCeEEEEEcCCC
Confidence 34789996655 78899999999986
No 30
>PRK13845 putative glycerol-3-phosphate acyltransferase PlsX; Provisional
Probab=20.48 E-value=2.6e+02 Score=26.47 Aligned_cols=13 Identities=23% Similarity=0.452 Sum_probs=10.0
Q ss_pred EEEeeCCCcCcHHHH
Q 022493 20 CGIFDGHGPWGHFVA 34 (296)
Q Consensus 20 ~~V~DG~Gg~G~~~s 34 (296)
..||||+- |..+-
T Consensus 324 VVVcDGFt--GNV~L 336 (437)
T PRK13845 324 VVVCDGFT--GNVLL 336 (437)
T ss_pred EEEeCCcc--hHHHH
Confidence 78999999 76443
Done!