Query         022493
Match_columns 296
No_of_seqs    144 out of 1186
Neff          8.9 
Searched_HMMs 29240
Date          Mon Mar 25 06:23:26 2013
Command       hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022493.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022493hhsearch_pdb -cpu 12 -v 0 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 2iq1_A Protein phosphatase 2C  100.0 1.4E-45 4.8E-50  324.4  27.6  233   15-290    33-271 (274)
  2 3qn1_B Protein phosphatase 2C  100.0 3.7E-46 1.3E-50  337.1  24.1  240   16-287    61-334 (337)
  3 2p8e_A PPM1B beta isoform vari 100.0 6.2E-46 2.1E-50  331.7  24.0  246    3-285    40-302 (307)
  4 2i0o_A Ser/Thr phosphatase; be 100.0 7.7E-46 2.6E-50  330.7  24.5  237    3-281    39-304 (304)
  5 3kdj_B Protein phosphatase 2C  100.0 1.2E-45 4.2E-50  331.1  25.5  237   14-288    49-312 (316)
  6 2irm_A Mitogen-activated prote 100.0 2.1E-46 7.1E-51  341.4  17.5  235   14-282    47-357 (358)
  7 1a6q_A Phosphatase 2C; catalyt 100.0 1.8E-44   6E-49  330.6  25.5  244    3-286    38-297 (382)
  8 2i44_A Serine-threonine phosph 100.0 3.3E-44 1.1E-48  323.0  25.8  262    3-283    38-323 (324)
  9 3d8k_A PP2C, protein phosphata 100.0 1.4E-44 4.9E-49  330.5  23.4  230    4-285    35-328 (377)
 10 2j4o_A Mitogen-activated prote 100.0   1E-45 3.5E-50  341.1  14.9  242   14-286    59-371 (401)
 11 2pnq_A [pyruvate dehydrogenase 100.0 7.5E-45 2.6E-49  340.3  19.5  258   15-282    64-456 (467)
 12 4da1_A Protein phosphatase 1K, 100.0 1.1E-43 3.7E-48  326.7  26.5  234   15-287   147-382 (389)
 13 2isn_A NYSGXRC-8828Z, phosphat 100.0 9.9E-44 3.4E-48  323.8  23.4  236    1-285    27-337 (364)
 14 2pk0_A Serine/threonine protei 100.0 2.7E-37 9.1E-42  267.9  17.8  216   15-283    32-248 (250)
 15 2j82_A TPPHA, protein serine-t 100.0   2E-35 6.7E-40  254.5  22.9  210   16-280    27-240 (240)
 16 2jfr_A Ser-Thr phosphatase MSP 100.0 3.3E-36 1.1E-40  258.5  16.8  202   17-280    29-233 (234)
 17 1txo_A Putative bacterial enzy 100.0 7.6E-36 2.6E-40  256.7  17.6  210   17-282    28-237 (237)
 18 3rnr_A Stage II sporulation E  100.0   6E-36   2E-40  253.2  14.5  203   12-280     5-211 (211)
 19 3t91_A Stage II sporulation pr  99.8 7.2E-20 2.5E-24  157.4  15.6  190   15-294    34-234 (242)
 20 3pu9_A Protein serine/threonin  99.8 2.9E-17 9.9E-22  141.2  22.3  182   15-285    37-228 (242)
 21 3f79_A Probable two-component   99.7   2E-15 6.9E-20  130.6  15.8  182   14-281    61-253 (255)
 22 3zt9_A Serine phosphatase; hyd  99.6 7.4E-15 2.5E-19  121.8  16.0  163   15-279    29-193 (193)
 23 3ke6_A Protein RV1364C/MT1410;  99.2 1.8E-09   6E-14   99.2  22.5  129  101-286   117-262 (399)
 24 3eq2_A Probable two-component   98.2 1.8E-05   6E-10   72.1  13.9  120  101-281   264-392 (394)

No 1  
>2iq1_A Protein phosphatase 2C kappa, PPM1K; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.25A {Homo sapiens}
Probab=100.00  E-value=1.4e-45  Score=324.41  Aligned_cols=233  Identities=29%  Similarity=0.435  Sum_probs=186.9

Q ss_pred             CCeEEEEEeeCCCcCcHHHHHHHHHHhHHHHHHHHHHHHHhhcCCCCCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHhc
Q 022493           15 ADMMFCGIFDGHGPWGHFVAKKVRESMPSSLLCNWQETLAEASLLPDIDLDSDKKTHRFNIWKHSYVKTCAAVDQELEQH   94 (296)
Q Consensus        15 ~~~~l~~V~DG~Gg~G~~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~   94 (296)
                      ++..||+||||||  |+.+|+++++.+.+.+...+..    .                 ..+++++.+++..+++.+.+.
T Consensus        33 ~~~~l~~V~DG~G--G~~~a~~as~~~~~~l~~~~~~----~-----------------~~~~~~l~~a~~~~~~~i~~~   89 (274)
T 2iq1_A           33 DEVLYFAVYDGHG--GPAAADFCHTHMEKCIMDLLPK----E-----------------KNLETLLTLAFLEIDKAFSSH   89 (274)
T ss_dssp             SSEEEEEEEEEES--STHHHHHHHHHHHHHHHHHTTT----C-----------------CCHHHHHHHHHHHHHHHHHHH
T ss_pred             CCeEEEEEECCCC--CHHHHHHHHHHHHHHHHHHhcc----c-----------------ccHHHHHHHHHHHHHHHHHHH
Confidence            5788999999999  9999999999998887643211    0                 023444555555555555432


Q ss_pred             c----CCCCcCCcceEEEEEEEC-CeEEEEEeccCceEEEEecCCCceeEEEcCccCCCCChhhHHHHHHcCCeeEeecC
Q 022493           95 R----QIDSFYSGTTALTIVRQG-EFIMVANVGDSRAVLATTSEDGSLVPVQLTVDFKPNLPYEAERIIQCKGRVFCLED  169 (296)
Q Consensus        95 ~----~~~~~~~GtT~~~~~i~~-~~l~~anvGDSr~~l~~~~~~g~~~~~~lt~dH~~~~~~E~~ri~~~gg~i~~~~~  169 (296)
                      .    ......+|||++++++.+ +++|++|+||||+|++|   +|  ++.+||.||++..+.|+.||.++||.+.... 
T Consensus        90 ~~~~~~~~~~~~GtT~~~~~i~~~~~l~~anvGDSR~~l~r---~g--~~~~lT~DH~~~~~~E~~Ri~~~gG~v~~~~-  163 (274)
T 2iq1_A           90 ARLSADATLLTSGTTATVALLRDGIELVVASVGDSRAILCR---KG--KPMKLTIDHTPERKDEKERIKKCGGFVAWNS-  163 (274)
T ss_dssp             HHC---CCGGGCEECEEEEEEETTTEEEEEEESSCEEEEEE---TT--EEEECCCCCCTTSHHHHHHHHHTTCCEEECT-
T ss_pred             hhhccccCCCCCCCcEEEEEEECCCEEEEEEecCceEEEEe---CC--EeeECCCCCCCcCHHHHHHHHHcCCEEEcCC-
Confidence            2    223456999999999985 69999999999999998   45  5699999999999999999999999998632 


Q ss_pred             CCCceeEecCCCCCCCcccccccCcccccccCccccceeEEEEecCC-CeEEEEecCCCCCCCCHHHHHHHHhcCCChHH
Q 022493          170 EPGVHRVWLPNEECPGLAMSRAFGDYCVKDYGLISVPEVTQRHITSR-DQFVVLATDGVWDVISNQEAIQIVSSTPNRAK  248 (296)
Q Consensus       170 ~~~~~rv~~~~~~~~~l~~tRalGd~~~k~~~v~~~Pdi~~~~l~~~-d~fliL~SDGl~d~l~~~ei~~i~~~~~~~~~  248 (296)
                       .+..|+      .+.+.+||+||+..+|+.+++++|++..+++.++ |+|||||||||||+++++|+.+++.+..++++
T Consensus       164 -~~~~~~------~~~~~ltralGd~~~k~~~v~~~pdi~~~~l~~g~d~~lll~SDGl~d~l~~~ei~~~~~~~~~~~~  236 (274)
T 2iq1_A          164 -LGQPHV------NGRLAMTRSIGDLDLKTSGVIAEPETKRIKLHHADDSFLVLTTDGINFMVNSQEICDFVNQCHDPNE  236 (274)
T ss_dssp             -TSCEEE------TTTBSCSBCEECGGGTTTTCBCCCEEEEEECCTTTEEEEEEECHHHHTTCCHHHHHHHHHTSSSHHH
T ss_pred             -CCceeE------CCeEeeccccCChhhccCCEEeCCEEEEEEeCCCCCcEEEEEccCcccCCCHHHHHHHHHHcCCHHH
Confidence             122333      5678999999999999999999999999999985 67999999999999999999999998888999


Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCCceEEEEEEccCCCCCcccC
Q 022493          249 SAKRLVECAVHAWKRKRKGIAMDDISAICLFFHSSPLSQQVH  290 (296)
Q Consensus       249 ~a~~L~~~a~~~~~~~~~g~~~DNiTvivv~~~~~~~~~~~~  290 (296)
                      +|+.|++.|+.      +| +.|||||||+++.......+.|
T Consensus       237 ~a~~L~~~A~~------~g-~~DNiTvivv~~~~~~~~~~~~  271 (274)
T 2iq1_A          237 AAHAVTEQAIQ------YG-TEDNSTAVVVPFGAWGKEGHHH  271 (274)
T ss_dssp             HHHHHHHHHHH------TT-CCSCEEEEEEECTTC-------
T ss_pred             HHHHHHHHHHH------cC-CCCCeEEEEEEccCCCCCCccc
Confidence            99999999998      57 9999999999999877776655


No 2  
>3qn1_B Protein phosphatase 2C 16; start domain, BET V domain, PYR/PYL/RCAR, PP2C, abscisic ACI receptor, type 2C protein phosphatase; HET: A8S; 1.80A {Arabidopsis thaliana} PDB: 3zvu_B* 3ujg_B 3nmt_B* 4ds8_B* 3rt0_A 3kb3_B*
Probab=100.00  E-value=3.7e-46  Score=337.12  Aligned_cols=240  Identities=34%  Similarity=0.465  Sum_probs=195.6

Q ss_pred             CeEEEEEeeCCCcCcHHHHHHHHHHhHHHHHHHHHHHHHhhcCCCCCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHhcc
Q 022493           16 DMMFCGIFDGHGPWGHFVAKKVRESMPSSLLCNWQETLAEASLLPDIDLDSDKKTHRFNIWKHSYVKTCAAVDQELEQHR   95 (296)
Q Consensus        16 ~~~l~~V~DG~Gg~G~~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~   95 (296)
                      +..|||||||||  |+.+++++++.++..|...+...........       ........+++++.++|..+++++....
T Consensus        61 ~~~l~~V~DGhG--G~~~~~~as~~~~~~l~~~~~~~~~~~~~~~-------~~~~~~~~~~~~l~~a~~~~d~~l~~~~  131 (337)
T 3qn1_B           61 TGHFFGVYDGHG--GHKVADYCRDRLHFALAEEIERIKDELCKRN-------TGEGRQVQWDKVFTSCFLTVDGEIEGKI  131 (337)
T ss_dssp             EEEEEEEEEEES--SSHHHHHHHHHHHHHHHHHHHHTC-------------------CHHHHHHHHHHHHHHHHHHHTSS
T ss_pred             CeEEEEEEeCCC--ChhHHHHHHHHHHHHHHHHHHhhhhhhhccc-------cccchHHHHHHHHHHHHHHhhHHHHhhh
Confidence            678999999999  9999999999999999877654321100000       0001113778889999999999987643


Q ss_pred             -------------CCCCcCCcceEEEEEEECCeEEEEEeccCceEEEEecCCCceeEEEcCccCCCCChhhHHHHHHcCC
Q 022493           96 -------------QIDSFYSGTTALTIVRQGEFIMVANVGDSRAVLATTSEDGSLVPVQLTVDFKPNLPYEAERIIQCKG  162 (296)
Q Consensus        96 -------------~~~~~~~GtT~~~~~i~~~~l~~anvGDSr~~l~~~~~~g~~~~~~lt~dH~~~~~~E~~ri~~~gg  162 (296)
                                   ......+|||++++++.++++|++||||||+|++|   +|  .+++||.||++.++.|+.||...||
T Consensus       132 ~~~~~~~~~~~~~~~~~~~~GtT~~~~~i~~~~l~~anvGDSR~~l~r---~g--~~~~lT~DH~~~~~~e~~ri~~~gg  206 (337)
T 3qn1_B          132 GRAVVGSSDKVLEAVASETVGSTAVVALVCSSHIVVSNCGDSRAVLFR---GK--EAMPLSVDHKPDREDEYARIENAGG  206 (337)
T ss_dssp             CBCCTTCSSCBCCCSSCTTCEECEEEEEECSSEEEEEEESSCEEEEEE---TT--EEEESCCCCCTTSHHHHHHHHHTTC
T ss_pred             hccccccccccccccccCCCCceEEEEEEECCEEEEEeccCcEEEEEe---CC--EeeeecCCCCCCCHHHHHHHHHcCC
Confidence                         12234799999999999999999999999999998   45  5699999999999999999999999


Q ss_pred             eeEeecCCCCceeEecCCCCCCCcccccccCcccccccCccccceeEEEEecCCCeEEEEecCCCCCCCCHHHHHHHHhc
Q 022493          163 RVFCLEDEPGVHRVWLPNEECPGLAMSRAFGDYCVKDYGLISVPEVTQRHITSRDQFVVLATDGVWDVISNQEAIQIVSS  242 (296)
Q Consensus       163 ~i~~~~~~~~~~rv~~~~~~~~~l~~tRalGd~~~k~~~v~~~Pdi~~~~l~~~d~fliL~SDGl~d~l~~~ei~~i~~~  242 (296)
                      .+....    ..|+      .+.+.+||+|||..+|+. ++++|++..+.+.+.++|||||||||||+++++||.+++++
T Consensus       207 ~v~~~~----~~r~------~g~l~~sRalGd~~~~~~-v~~~pdv~~~~~~~~~d~llL~SDGl~d~l~~~ei~~~~~~  275 (337)
T 3qn1_B          207 KVIQWQ----GARV------FGVLAMSRSIGDRYLKPY-VIPEPEVTFMPRSREDECLILASDGLWDVMNNQEVCEIARR  275 (337)
T ss_dssp             CEEESS----SEEE------TTTBSCSBCEECGGGTTT-SBCCCEEEEEECCTTEEEEEEECHHHHTTSCHHHHHHHHHH
T ss_pred             eEEecC----Ccee------cCccccccccccccccCC-CCCcceEEEEEeCCCCCEEEEEecCcccCCCHHHHHHHHHH
Confidence            987522    1333      678899999999999987 99999999999977777999999999999999999999975


Q ss_pred             ---------------------CCChHHHHHHHHHHHHHHHHhhcCCCCCCceEEEEEEccCCCCCc
Q 022493          243 ---------------------TPNRAKSAKRLVECAVHAWKRKRKGIAMDDISAICLFFHSSPLSQ  287 (296)
Q Consensus       243 ---------------------~~~~~~~a~~L~~~a~~~~~~~~~g~~~DNiTvivv~~~~~~~~~  287 (296)
                                           ..+++++|+.|++.|+.      +| +.||||||||+|......+
T Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~Lv~~A~~------~g-~~DNiTvivv~l~~~~~~~  334 (337)
T 3qn1_B          276 RILMWHKKNGAPPLAERGKGIDPACQAAADYLSMLALQ------KG-SKDNISIIVIDLKAQRKFK  334 (337)
T ss_dssp             HHHHHHHHHCCC----CCSSCCHHHHHHHHHHHHHHHH------TT-CCSCEEEEEEECCSCC---
T ss_pred             HhhhhccccccccccccccccChhHHHHHHHHHHHHHH------cC-CCCCEEEEEEEecCCcccc
Confidence                                 34578999999999999      57 9999999999998765543


No 3  
>2p8e_A PPM1B beta isoform variant 6; structural genomics, hydrolase, PSI-2, protein structure initiative; 1.82A {Homo sapiens}
Probab=100.00  E-value=6.2e-46  Score=331.75  Aligned_cols=246  Identities=29%  Similarity=0.398  Sum_probs=192.8

Q ss_pred             eeeeeecccCC-CCCeEEEEEeeCCCcCcHHHHHHHHHHhHHHHHHH--HHHHHHhhcCCCCCCCcchhhhhhHHHHHHH
Q 022493            3 SFFVLEQEFGC-QADMMFCGIFDGHGPWGHFVAKKVRESMPSSLLCN--WQETLAEASLLPDIDLDSDKKTHRFNIWKHS   79 (296)
Q Consensus         3 ~~~~~~~~~~~-~~~~~l~~V~DG~Gg~G~~~s~~~~~~l~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   79 (296)
                      .++++..++.. .++..||+||||||  |+.+|+++++.+++.+...  +......      .+    ......+.+.++
T Consensus        40 D~~~~~~~~~~~~~~~~l~~V~DGhG--G~~~a~~as~~~~~~l~~~~~~~~~~~~------~~----~~~~~~~~~~~~  107 (307)
T 2p8e_A           40 DAHTAVVGIPHGLEDWSFFAVYDGHA--GSRVANYCSTHLLEHITTNEDFRAAGKS------GS----ALELSVENVKNG  107 (307)
T ss_dssp             EEEEEEEEETTTEEEEEEEEEEEEES--CSHHHHHHHHHHHHHHHTSTTTC---------------------CHHHHHHH
T ss_pred             ceEEEEecCCCCCCCeEEEEEECCCC--CHHHHHHHHHHHHHHHHhhHhhhhcccc------cc----cccccHHHHHHH
Confidence            34444444432 24678999999999  9999999999999988741  1110000      00    000112366778


Q ss_pred             HHHHHHHHHHHHHhccCC--CCcCCcceEEEEEEECCeEEEEEeccCceEEEEecCCCceeEEEcCccCCCCChhhHHHH
Q 022493           80 YVKTCAAVDQELEQHRQI--DSFYSGTTALTIVRQGEFIMVANVGDSRAVLATTSEDGSLVPVQLTVDFKPNLPYEAERI  157 (296)
Q Consensus        80 l~~~~~~~~~~~~~~~~~--~~~~~GtT~~~~~i~~~~l~~anvGDSr~~l~~~~~~g~~~~~~lt~dH~~~~~~E~~ri  157 (296)
                      +.++|..+++++.+....  ....+|||++++++.++++|+|||||||+|++|   +|  .+.+||.||++.++.|+.||
T Consensus       108 l~~a~~~~~~~i~~~~~~~~~~~~~GtT~~~~~i~~~~l~vanvGDSRa~l~r---~g--~~~~lT~DH~~~~~~E~~rI  182 (307)
T 2p8e_A          108 IRTGFLKIDEYMRNFSDLRNGMDRSGSTAVGVMISPKHIYFINCGDSRAVLYR---NG--QVCFSTQDHKPCNPREKERI  182 (307)
T ss_dssp             HHHHHHHHHHHHHTSTTTC---CCCEECEEEEEECSSEEEEEEESSCEEEEEE---TT--EEEEECCCCCTTSHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhhhccCCCCCCCeEEEEEEECCcEEEEEccCcEEEEEE---CC--ccccCCCCCCCCCHHHHHHH
Confidence            888888899888765322  234699999999999999999999999999998   46  56999999999999999999


Q ss_pred             HHcCCeeEeecCCCCceeEecCCCCCCCcccccccCcccccccC--------ccccceeEEEEecCCCeEEEEecCCCCC
Q 022493          158 IQCKGRVFCLEDEPGVHRVWLPNEECPGLAMSRAFGDYCVKDYG--------LISVPEVTQRHITSRDQFVVLATDGVWD  229 (296)
Q Consensus       158 ~~~gg~i~~~~~~~~~~rv~~~~~~~~~l~~tRalGd~~~k~~~--------v~~~Pdi~~~~l~~~d~fliL~SDGl~d  229 (296)
                      ...||.+..       .|+      .+.+.+||||||..+|..+        ++++|++..+++.++|.|||||||||||
T Consensus       183 ~~~gg~v~~-------~rv------~g~l~ltRalGd~~~k~~~~~~~~~~~v~~~pdv~~~~l~~~d~~llL~SDGl~d  249 (307)
T 2p8e_A          183 QNAGGSVMI-------QRV------NGSLAVSRALGDYDYKCVDGKGPTEQLVSPEPEVYEILRAEEDEFIILACDGIWD  249 (307)
T ss_dssp             HHTTCCEET-------TEE------TTTBSCSBCEECGGGSCCTTCCGGGSSSBCCCEEEEEECCTTEEEEEEECHHHHT
T ss_pred             HHcCCEEEe-------Ccc------cCeEeccccccCHHHhcCcccCCCCCeEeccCeEEEEEcCCCCeEEEEECCCccc
Confidence            999998763       243      6678999999999988642        6889999999999998899999999999


Q ss_pred             CCCHHHHHHHHhc----CCChHHHHHHHHHHHHHHHHhhcCCCCCCceEEEEEEccCCCC
Q 022493          230 VISNQEAIQIVSS----TPNRAKSAKRLVECAVHAWKRKRKGIAMDDISAICLFFHSSPL  285 (296)
Q Consensus       230 ~l~~~ei~~i~~~----~~~~~~~a~~L~~~a~~~~~~~~~g~~~DNiTvivv~~~~~~~  285 (296)
                      +++++|+.+++.+    ..+++++|+.|++.|+.      +| +.|||||||+++...+.
T Consensus       250 ~ls~~ei~~~v~~~~~~~~~~~~~a~~Lv~~A~~------~g-~~DNiTvivv~~~~~~~  302 (307)
T 2p8e_A          250 VMSNEELCEYVKSRLEVSDDLENVCNWVVDTCLH------KG-SRDNMSIVLVCFSNEGH  302 (307)
T ss_dssp             TSCHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHH------TT-CCSCEEEEEEEC-----
T ss_pred             CCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH------cC-CCCCeEEEEEECCCCCc
Confidence            9999999999986    56899999999999998      57 99999999999987654


No 4  
>2i0o_A Ser/Thr phosphatase; beta sandwich, structural genomics, PSI, protei structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Anopheles gambiae}
Probab=100.00  E-value=7.7e-46  Score=330.73  Aligned_cols=237  Identities=27%  Similarity=0.410  Sum_probs=182.5

Q ss_pred             eeeeeecccCCCCCeEEEEEeeCCCcCcHHHHHHHHHHhHHHHHHHHHHHHHhhcCCCCCCCcchhhhhhHHHHHHHHHH
Q 022493            3 SFFVLEQEFGCQADMMFCGIFDGHGPWGHFVAKKVRESMPSSLLCNWQETLAEASLLPDIDLDSDKKTHRFNIWKHSYVK   82 (296)
Q Consensus         3 ~~~~~~~~~~~~~~~~l~~V~DG~Gg~G~~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~   82 (296)
                      .++++..++.  ++..||+||||||  |+.+|+++++.+++.+......  ..                  +.+++++.+
T Consensus        39 D~~~~~~~~~--~~~~l~~V~DGhG--G~~~a~~as~~~~~~l~~~~~~--~~------------------~~~~~~l~~   94 (304)
T 2i0o_A           39 DAHNCILNFD--DQCSFFAVYDGHG--GAEVAQYCSLHLPTFLKTVEAY--GR------------------KEFEKALKE   94 (304)
T ss_dssp             EEEEEEEEEE--TTEEEEEEEECSS--CSHHHHHHHHHHHHHHHHSHHH--HT------------------TCHHHHHHH
T ss_pred             CEEEEEeccC--CCeEEEEEEcCCC--CHHHHHHHHHHHHHHHHhhhhc--cc------------------ccHHHHHHH
Confidence            3444444432  5778999999999  9999999999999888754211  00                  134455666


Q ss_pred             HHHHHHHHHHhcc----------------CCCCcCCcceEEEEEEECCeEEEEEeccCceEEEEecCCCceeEEEcCccC
Q 022493           83 TCAAVDQELEQHR----------------QIDSFYSGTTALTIVRQGEFIMVANVGDSRAVLATTSEDGSLVPVQLTVDF  146 (296)
Q Consensus        83 ~~~~~~~~~~~~~----------------~~~~~~~GtT~~~~~i~~~~l~~anvGDSr~~l~~~~~~g~~~~~~lt~dH  146 (296)
                      +|..+++.+.+..                ......+|||++++++.++++|+|||||||+|++|   +|  ++++||.||
T Consensus        95 a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~GtT~~~~~i~~~~l~vanvGDSRa~l~r---~g--~~~~LT~DH  169 (304)
T 2i0o_A           95 AFLGFDATLLQEKVIEELKVLSGDSAGSDAEPGKDSGCTAVVALLHGKDLYVANAGDSRCVVCR---NG--KALEMSFDH  169 (304)
T ss_dssp             HHHHHHHHTTSHHHHHHHHHHHCC-----CCTTTSCEEEEEEEEEETTEEEEEEESSCEEEEEE---TT--EEEECCCCC
T ss_pred             HHHHHHHHHHhhhhHHHHhhhccccccccccCCCCCCccEEEEEEECCEEEEEEccCcEEEEEE---CC--EEEEcCCCc
Confidence            6666666554311                11245699999999999999999999999999998   56  569999999


Q ss_pred             CCCChhhHHHHHHcCCeeEeecCCCCceeEecCCCCCCCcccccccCccccccc--------CccccceeEEEEecCCCe
Q 022493          147 KPNLPYEAERIIQCKGRVFCLEDEPGVHRVWLPNEECPGLAMSRAFGDYCVKDY--------GLISVPEVTQRHITSRDQ  218 (296)
Q Consensus       147 ~~~~~~E~~ri~~~gg~i~~~~~~~~~~rv~~~~~~~~~l~~tRalGd~~~k~~--------~v~~~Pdi~~~~l~~~d~  218 (296)
                      +|.++.|+.||...||.+...      .|      ..+.+.+||+|||..+|..        .++++|++..+++.++|.
T Consensus       170 ~~~~~~e~~rI~~~gg~v~~~------~r------v~g~l~ltRalGd~~~k~~~~l~~~~~~v~~~pdi~~~~l~~~D~  237 (304)
T 2i0o_A          170 KPEDTVEYQRIEKAGGRVTLD------GR------VNGGLNLSRAIGDHGYKMNKSLPAEEQMISALPDIEKITVGPEDE  237 (304)
T ss_dssp             CTTSHHHHHHHHHTTCCBCTT------SC------BTTSCSCSBCEECGGGCCCTTSCGGGSSSBCCCEEEEEECCTTEE
T ss_pred             CCcCHHHHHHHHhCCCEEEeC------Ce------EcCceeccccccCHHHccCccCCccCCeEEeeCeEEEEEcCCCCe
Confidence            999999999999999988631      12      3677899999999998753        468899999999999999


Q ss_pred             EEEEecCCCCCCCCHHHHHHHHhc-----CCChHHHHHHHHHHHHHHHHhhcCCCCCCceEEEEEEcc
Q 022493          219 FVVLATDGVWDVISNQEAIQIVSS-----TPNRAKSAKRLVECAVHAWKRKRKGIAMDDISAICLFFH  281 (296)
Q Consensus       219 fliL~SDGl~d~l~~~ei~~i~~~-----~~~~~~~a~~L~~~a~~~~~~~~~g~~~DNiTvivv~~~  281 (296)
                      |||||||||||+++++|+.+++.+     ..+++++|+.|++.|+.++.....| +.||||||||+|+
T Consensus       238 fllL~SDGl~d~l~~~ei~~~v~~~~~~~~~~~~~~a~~L~~~a~~~~~~g~~g-~~DNiTvivv~~~  304 (304)
T 2i0o_A          238 FMVLACDGIWNFMTSEQVVQFVQERINKPGMKLSKICEELFDHCLAPHTRGDGT-GCDNMTAIIVQFK  304 (304)
T ss_dssp             EEEEECHHHHTTCCHHHHHHHHHHHHTSTTCCHHHHHHHHHHHHC-------------CEEEEEEEEC
T ss_pred             EEEEECcCccccCCHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhccCCC-CCCCeEEEEEEeC
Confidence            999999999999999999999986     5679999999999999754322134 8999999999974


No 5  
>3kdj_B Protein phosphatase 2C 56; ABA, PYL1, abscisic acid signaling pathway, cell membr hydrolase, magnesium, manganese, metal-binding, nucleus; HET: A8S; 1.88A {Arabidopsis thaliana} PDB: 3nmn_B* 3jrq_A* 3ujk_A 3nmv_B 3ujl_B*
Probab=100.00  E-value=1.2e-45  Score=331.13  Aligned_cols=237  Identities=33%  Similarity=0.491  Sum_probs=194.6

Q ss_pred             CCCeEEEEEeeCCCcCcHHHHHHHHHHhHHHHHHHHHHHHHhhcCCCCCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHh
Q 022493           14 QADMMFCGIFDGHGPWGHFVAKKVRESMPSSLLCNWQETLAEASLLPDIDLDSDKKTHRFNIWKHSYVKTCAAVDQELEQ   93 (296)
Q Consensus        14 ~~~~~l~~V~DG~Gg~G~~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~   93 (296)
                      ..+..+|+||||||  |+.+++++++.+++.|...+......      .    .......+.+++++.+++..+++++..
T Consensus        49 ~~~~~~~~V~DG~G--G~~~~~~as~~~~~~l~~~~~~~~~~------~----~~~~~~~~~~~~~l~~a~~~~~~~~~~  116 (316)
T 3kdj_B           49 QSAAHFFGVYDGHG--GSQVANYCRERMHLALAEEIAKEKPM------L----SDGDTWLEKWKKALFNSFLRVDSEIES  116 (316)
T ss_dssp             GGGCEEEEEEEEES--SSHHHHHHHHHHHHHHHHHHHHHCCC------G----GGTHHHHHHHHHHHHHHHHHHHHHGGG
T ss_pred             CCCeEEEEEEeCCC--cHHHHHHHHHHHHHHHHHHHHhhhcc------c----ccccchHHHHHHHHHHHHHHHHHHHhc
Confidence            34788999999999  99999999999999998766543210      0    001123356788899999999988865


Q ss_pred             ccCCCCcCCcceEEEEEEECCeEEEEEeccCceEEEEecCCCceeEEEcCccCCCCChhhHHHHHHcCCeeEeecCCCCc
Q 022493           94 HRQIDSFYSGTTALTIVRQGEFIMVANVGDSRAVLATTSEDGSLVPVQLTVDFKPNLPYEAERIIQCKGRVFCLEDEPGV  173 (296)
Q Consensus        94 ~~~~~~~~~GtT~~~~~i~~~~l~~anvGDSr~~l~~~~~~g~~~~~~lt~dH~~~~~~E~~ri~~~gg~i~~~~~~~~~  173 (296)
                      ..   ...+|||++++++.++++|++|+||||+|++|   +|  .+++||.||++.++.|+.||...||.+....    .
T Consensus       117 ~~---~~~~GtT~~~~~i~~~~l~vanvGDSR~yl~r---~g--~~~~lT~DH~~~~~~e~~ri~~~~g~v~~~~----~  184 (316)
T 3kdj_B          117 VA---PETVGSTSVVAVVFPSHIFVANCGDSRAVLCR---GK--TALPLSVDHKPDREDEAARIEAAGGKVIQWN----G  184 (316)
T ss_dssp             TS---CTTCEECEEEEEECSSEEEEEEESSCEEEEEE---TT--EEEESCCCCCTTSHHHHHHHHHTTCCEEESS----S
T ss_pred             cc---CCCCCCcEEEEEEECCEEEEEEccCCEEEEEE---CC--EecccCCCCCCCCHHHHHHHHHcCCeEEecC----C
Confidence            32   34699999999999999999999999999998   45  5699999999999999999999999987521    1


Q ss_pred             eeEecCCCCCCCcccccccCcccccccCccccceeEEEEecCCCeEEEEecCCCCCCCCHHHHHHHHhc-----------
Q 022493          174 HRVWLPNEECPGLAMSRAFGDYCVKDYGLISVPEVTQRHITSRDQFVVLATDGVWDVISNQEAIQIVSS-----------  242 (296)
Q Consensus       174 ~rv~~~~~~~~~l~~tRalGd~~~k~~~v~~~Pdi~~~~l~~~d~fliL~SDGl~d~l~~~ei~~i~~~-----------  242 (296)
                      .|+      .+.+.+||+|||..+|+. ++++|++..+.+.+.++|||||||||||+++++||.+++++           
T Consensus       185 ~r~------~g~l~~sRalGd~~~~~~-~~~~pdv~~~~~~~~~d~llL~SDGl~d~l~~~ei~~~~~~~~~~~~~~~~~  257 (316)
T 3kdj_B          185 ARV------FGVLAMSRSIGDRYLKPS-IIPDPEVTAVKRVKEDDCLILASDGVWDVMTDEEACEMARKRILLWHKKNAV  257 (316)
T ss_dssp             EEE------TTTBSCSBCEECGGGTTT-SBCCCEEEEEECCTTEEEEEEECHHHHTSSCHHHHHHHHHHHHHHHTTC---
T ss_pred             ceE------cceeccccccCccccCCC-cCCCCceEEEEecCCCCEEEEEccCcccCCCHHHHHHHHHHHhhhhcccccc
Confidence            344      678999999999999986 99999999999666666999999999999999999999975           


Q ss_pred             ----------------CCChHHHHHHHHHHHHHHHHhhcCCCCCCceEEEEEEccCCCCCcc
Q 022493          243 ----------------TPNRAKSAKRLVECAVHAWKRKRKGIAMDDISAICLFFHSSPLSQQ  288 (296)
Q Consensus       243 ----------------~~~~~~~a~~L~~~a~~~~~~~~~g~~~DNiTvivv~~~~~~~~~~  288 (296)
                                      ..+++.+|+.|++.|+.      +| +.||||||||++...+..+.
T Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~aa~~Lv~~A~~------~g-~~DNiTvivv~l~~~~~~~~  312 (316)
T 3kdj_B          258 AGGASLLADERRKEGKDPAAMSAAEYLSKLAIQ------RG-SKDNISVVVVDLKPRRKLKS  312 (316)
T ss_dssp             --------------CCCHHHHHHHHHHHHHHHH------TT-CCSCEEEEEEECSCC-----
T ss_pred             ccccccccccccccccCchHHHHHHHHHHHHHH------cC-CCCCeEEEEEEccCCCcccC
Confidence                            23478999999999999      57 99999999999998766544


No 6  
>2irm_A Mitogen-activated protein kinase kinase kinase 7 interacting protein 1; TAK1-binding protein, TAB1; 3.00A {Anopheles gambiae}
Probab=100.00  E-value=2.1e-46  Score=341.41  Aligned_cols=235  Identities=23%  Similarity=0.286  Sum_probs=186.6

Q ss_pred             CCCeEEEEEeeCCCcCcHHHHHHHHHHhHHHHHH-HHHHHHHhhcCCCCCCCcchhhhhhHHHHHHHHHHHHHHHHHHHH
Q 022493           14 QADMMFCGIFDGHGPWGHFVAKKVRESMPSSLLC-NWQETLAEASLLPDIDLDSDKKTHRFNIWKHSYVKTCAAVDQELE   92 (296)
Q Consensus        14 ~~~~~l~~V~DG~Gg~G~~~s~~~~~~l~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~   92 (296)
                      .++..|||||||||  |+.+|+++++.++..|.. .+.         ...         ..+.+++++.++|..+++++.
T Consensus        47 ~~~~~lf~V~DGhG--G~~aa~~as~~l~~~l~~~~l~---------~~~---------~~~~~~~~l~~a~~~~d~~i~  106 (358)
T 2irm_A           47 DNNTSLYAILSGHN--GVTVAENALQEMAAELLLGQLN---------VCN---------TDEAVKELIRQSFMSVEKGYF  106 (358)
T ss_dssp             SSSEEEEEEEEEES--CSHHHHHHHHHHHHHSSSSTTT---------TCC---------SHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEEEEcCCC--CHHHHHHHHHHHHHHHHHhhhc---------ccc---------chhhHHHHHHHHHHHHHHHHH
Confidence            46788999999999  999999999999888763 110         000         112556666677777776664


Q ss_pred             hcc--------------------------C-----------CCCcCCcceEEEEEEECCeEEEEEeccCceEEEEecCCC
Q 022493           93 QHR--------------------------Q-----------IDSFYSGTTALTIVRQGEFIMVANVGDSRAVLATTSEDG  135 (296)
Q Consensus        93 ~~~--------------------------~-----------~~~~~~GtT~~~~~i~~~~l~~anvGDSr~~l~~~~~~g  135 (296)
                      +..                          .           .....+|||++++++.++++|+|||||||+|++|...+|
T Consensus       107 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~GtTav~~li~~~~l~vAnvGDSRa~l~r~~~~g  186 (358)
T 2irm_A          107 DSINPHVATKTAIQLHLSADGMNQYEISQQFENVLQKLDSLNNALSVGSSAVLALIHRSHLYLGNIGNCRALLCKTDEHD  186 (358)
T ss_dssp             HHSHHHHHHHHHHHHTTC---------------CCCTHHHHHTTTTCEEEEEEEEEESSEEEEEEESSCEEEEEECCTTC
T ss_pred             HHHHhhhhccccccccccccccccccchhhccchhhhcccccCCCCCCCcEEEEEEECCEEEEEEcccCeEEEEEecCCC
Confidence            311                          0           022369999999999999999999999999999964457


Q ss_pred             ceeEEEcCccCCCCChhhHHHHHHcCCeeEeecCCCCceeEecCCCCCCCcccccccCcccccc-------------cCc
Q 022493          136 SLVPVQLTVDFKPNLPYEAERIIQCKGRVFCLEDEPGVHRVWLPNEECPGLAMSRAFGDYCVKD-------------YGL  202 (296)
Q Consensus       136 ~~~~~~lt~dH~~~~~~E~~ri~~~gg~i~~~~~~~~~~rv~~~~~~~~~l~~tRalGd~~~k~-------------~~v  202 (296)
                      .+++++||.||+|.++.|++||.++||.+..       .|      ..+.+ +||||||+.+|.             .++
T Consensus       187 ~~~~~~LT~DH~~~~~~E~~Ri~~~Gg~v~~-------~r------~~g~l-lTRalGd~~~K~~~~~~~~~~~~~~~~v  252 (358)
T 2irm_A          187 TLTVTQLSVDHNLLNAEEAARLFRLGLMAQN-------FE------GVPLY-STRCIGNYLGKAGYKDCNFLSSATAEPV  252 (358)
T ss_dssp             SCEEEECSCCCBTTSHHHHHHHHTTTCCGGG-------GT------TCTTC-BSBCEECHHHHTTGGGSSSSTTCSSCSS
T ss_pred             ceeeEeCCCCCCCCCHHHHHHHHHcCCeEec-------cC------cCCEE-cccCCcCHHHhccccccccccccCCCCE
Confidence            6677999999999999999999999998763       11      13334 999999998875             358


Q ss_pred             cccceeEE-EEecCCCeEEEEecCCCCCCCC----------HHHHHHHHhcC----CChHHHHHHHHHHHHHHHHhh---
Q 022493          203 ISVPEVTQ-RHITSRDQFVVLATDGVWDVIS----------NQEAIQIVSST----PNRAKSAKRLVECAVHAWKRK---  264 (296)
Q Consensus       203 ~~~Pdi~~-~~l~~~d~fliL~SDGl~d~l~----------~~ei~~i~~~~----~~~~~~a~~L~~~a~~~~~~~---  264 (296)
                      +++||+.. +++.++|.|||||||||||+++          ++||.+++...    .+++++|+.|++.|+..+...   
T Consensus       253 ~~~Pdi~~~~~l~~~d~fllL~SDGl~d~l~~~~~~~~~~~~~ei~~~v~~~~~~~~~~~~~a~~Lv~~A~~~~~~~~~~  332 (358)
T 2irm_A          253 IFEPEIVGGIQITPACRFLVLMSSGLCRALHEIFPGDASTGNRELVRMISEEFQNQSTLGGVAQSVVHRIVQAHHDTYMQ  332 (358)
T ss_dssp             BCCCEEEEEEECCTTEEEEEEECHHHHHHHHHHSCSSSSHHHHHHHHHHHHHTTTCCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             eccCeEEEEEEeCCCCcEEEEECCCcccCccccccccccccHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhhhhcc
Confidence            99999995 9999999999999999999999          89999999864    679999999999998754221   


Q ss_pred             -------cCCCCCCceEEEEEEccC
Q 022493          265 -------RKGIAMDDISAICLFFHS  282 (296)
Q Consensus       265 -------~~g~~~DNiTvivv~~~~  282 (296)
                             +.|.+.||||||||+|..
T Consensus       333 ~~~~~~~~Gg~~~DNiTvivv~~~~  357 (358)
T 2irm_A          333 LVEEHRSVTFNSRDDVTLLIRNFNY  357 (358)
T ss_dssp             HHSSSCCCCCCEECCEEEEEEESCC
T ss_pred             ccccccccCCCCCCCeEEEEEeCCC
Confidence                   112379999999999965


No 7  
>1a6q_A Phosphatase 2C; catalytic mechanism, metalloenzyme, transductuin, hydrolase; 2.00A {Homo sapiens} SCOP: a.159.1.1 d.219.1.1 PDB: 3fxk_A 3fxj_A 3fxl_A* 3fxm_A* 3fxo_A
Probab=100.00  E-value=1.8e-44  Score=330.57  Aligned_cols=244  Identities=29%  Similarity=0.403  Sum_probs=194.6

Q ss_pred             eeeeeecccCC-CCCeEEEEEeeCCCcCcHHHHHHHHHHhHHHHHHHHHHHHHhhcCCCCCCCcchhhhhhHHHHHHHHH
Q 022493            3 SFFVLEQEFGC-QADMMFCGIFDGHGPWGHFVAKKVRESMPSSLLCNWQETLAEASLLPDIDLDSDKKTHRFNIWKHSYV   81 (296)
Q Consensus         3 ~~~~~~~~~~~-~~~~~l~~V~DG~Gg~G~~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~   81 (296)
                      .++.+..++.. .++..||+||||||  |+.+|+++++.+++.+....  .+...    ...       ...+.+.+++.
T Consensus        38 Da~~~~~~~~~~~~~~~lf~V~DGhG--G~~aa~~as~~l~~~l~~~~--~~~~~----~~~-------~~~~~~~~~l~  102 (382)
T 1a6q_A           38 DAHTAVIGLPSGLESWSFFAVYDGHA--GSQVAKYCCEHLLDHITNNQ--DFKGS----AGA-------PSVENVKNGIR  102 (382)
T ss_dssp             EEEEEEEEETTTEEEEEEEEEEEEES--CSHHHHHHHHHHHHHHHTSH--HHHCS----SSS-------CCHHHHHHHHH
T ss_pred             ceeEEecCCCCCCCCeEEEEEEcCCC--cHHHHHHHHHHHHHHHHhhh--hhhcc----CCC-------CCHHHHHHHHH
Confidence            44555444432 24678999999999  99999999999999887421  01100    000       01135566777


Q ss_pred             HHHHHHHHHHHhcc--CCCCcCCcceEEEEEEECCeEEEEEeccCceEEEEecCCCceeEEEcCccCCCCChhhHHHHHH
Q 022493           82 KTCAAVDQELEQHR--QIDSFYSGTTALTIVRQGEFIMVANVGDSRAVLATTSEDGSLVPVQLTVDFKPNLPYEAERIIQ  159 (296)
Q Consensus        82 ~~~~~~~~~~~~~~--~~~~~~~GtT~~~~~i~~~~l~~anvGDSr~~l~~~~~~g~~~~~~lt~dH~~~~~~E~~ri~~  159 (296)
                      ++|..+++.+.+..  ......+|||++++++.++++|+|||||||+|++|   +|  .+.+||.||++.++.|+.||..
T Consensus       103 ~af~~~n~~i~~~~~~~~~~~~~GtT~~~~li~~~~l~vanvGDSRayl~r---~g--~~~~LT~DHs~~~~~E~~RI~~  177 (382)
T 1a6q_A          103 TGFLEIDEHMRVMSEKKHGADRSGSTAVGVLISPQHTYFINCGDSRGLLCR---NR--KVHFFTQDHKPSNPLEKERIQN  177 (382)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCCCCEECEEEEEECSSEEEEEEESSCEEEEEE---TT--EEEEECCCCCTTSHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhhccCCCCCcceEEEEEEECCeEEEEEcCCCeEEEEE---CC--ceEEeCCCCCCCCHHHHHHHHh
Confidence            77777777766432  12234699999999999999999999999999998   46  5699999999999999999999


Q ss_pred             cCCeeEeecCCCCceeEecCCCCCCCcccccccCcccccccC--------ccccceeEEEEec-CCCeEEEEecCCCCCC
Q 022493          160 CKGRVFCLEDEPGVHRVWLPNEECPGLAMSRAFGDYCVKDYG--------LISVPEVTQRHIT-SRDQFVVLATDGVWDV  230 (296)
Q Consensus       160 ~gg~i~~~~~~~~~~rv~~~~~~~~~l~~tRalGd~~~k~~~--------v~~~Pdi~~~~l~-~~d~fliL~SDGl~d~  230 (296)
                      +||.+..       .|+      ++.+.+||||||..+|..+        ++++|++..+++. ++|+|||||||||||+
T Consensus       178 ~gg~v~~-------~Rv------~g~l~ltRalGd~~~K~~~~~~~~~~~v~~~Pdv~~~~l~~~~dd~llLaSDGlwd~  244 (382)
T 1a6q_A          178 AGGSVMI-------QRV------NGSLAVSRALGDFDYKCVHGKGPTEQLVSPEPEVHDIERSEEDDQFIILACDGIWDV  244 (382)
T ss_dssp             TTCCEET-------TEE------TTTBSCSBCEECGGGSCCTTCCGGGSSSBCCCEEEEEECCTTTEEEEEEECHHHHTT
T ss_pred             cCcEEec-------ccc------cCceeeeeecCcHhhcccccCCCccCeeeeeeeEEEEEccCCCCeEEEEeccCccCC
Confidence            9998863       344      6778999999999988643        6889999999999 7778999999999999


Q ss_pred             CCHHHHHHHHhc----CCChHHHHHHHHHHHHHHHHhhcCCCCCCceEEEEEEccCCCCC
Q 022493          231 ISNQEAIQIVSS----TPNRAKSAKRLVECAVHAWKRKRKGIAMDDISAICLFFHSSPLS  286 (296)
Q Consensus       231 l~~~ei~~i~~~----~~~~~~~a~~L~~~a~~~~~~~~~g~~~DNiTvivv~~~~~~~~  286 (296)
                      ++++++.+++..    ..+++++|+.|++.|+.      +| +.||||||||+|...+..
T Consensus       245 ls~~ei~~~v~~~~~~~~~~~~~a~~Lv~~A~~------~g-~~DNiTvivv~~~~~~~~  297 (382)
T 1a6q_A          245 MGNEELCDFVRSRLEVTDDLEKVCNEVVDTCLY------KG-SRDNMSVILICFPNAPKV  297 (382)
T ss_dssp             SCHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHH------TT-CCSCEEEEEEECTTSCCC
T ss_pred             CChHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh------cC-CcCCEEEEEEEecCCCCC
Confidence            999999999986    46899999999999998      57 999999999999876543


No 8  
>2i44_A Serine-threonine phosphatase 2C; PSI-2, 8817Z, structural genomics, protein structure initiative; 2.04A {Toxoplasma gondii}
Probab=100.00  E-value=3.3e-44  Score=322.97  Aligned_cols=262  Identities=27%  Similarity=0.454  Sum_probs=190.1

Q ss_pred             eeeeeecc-cCCCCCeEEEEEeeCCCcCcHHHHHHHHHHhHHHHHHH--HHHHHHhhcCCCCCCCcchhhhhhHHHHHHH
Q 022493            3 SFFVLEQE-FGCQADMMFCGIFDGHGPWGHFVAKKVRESMPSSLLCN--WQETLAEASLLPDIDLDSDKKTHRFNIWKHS   79 (296)
Q Consensus         3 ~~~~~~~~-~~~~~~~~l~~V~DG~Gg~G~~~s~~~~~~l~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   79 (296)
                      .++++..+ +...++..||+||||||  |+.+|+++++.+++.|...  +.+.....  ....... +......+.++++
T Consensus        38 D~~~~~~~~~~~~~~~~l~~V~DGhG--G~~~~~~as~~~~~~l~~~~~~~~~~~~l--~~~~~~~-~~~~~~~~~~~~~  112 (324)
T 2i44_A           38 DRFTLCPQLVPGRDDCAFFGVFDGTV--GDFASENVKDLVVPQLISSPAWQEVTEML--RSDVPAT-EVDEKLPQLLDQA  112 (324)
T ss_dssp             EEEEEESCCSTTCSSEEEEEEEEEES--SSHHHHHHHHHHHHHHHTCHHHHHHHHHH--TSCCCHH-HHHHHHHHHHHHH
T ss_pred             CeEEEEecCCCCCCCeEEEEEeCCCC--chHHHHHHHHHHHHHHHhhhHHHHHHHHh--hccCCcc-ccccccchhHHHH
Confidence            34444433 33457789999999999  9999999999999998763  33211100  0000000 0000011345667


Q ss_pred             HHHHHHHHHHHHHhccCC-CCcCCcceEEEEEEECCeEEEEEeccCceEEEEecCCCceeEEEcCccCCCCChhhHHHHH
Q 022493           80 YVKTCAAVDQELEQHRQI-DSFYSGTTALTIVRQGEFIMVANVGDSRAVLATTSEDGSLVPVQLTVDFKPNLPYEAERII  158 (296)
Q Consensus        80 l~~~~~~~~~~~~~~~~~-~~~~~GtT~~~~~i~~~~l~~anvGDSr~~l~~~~~~g~~~~~~lt~dH~~~~~~E~~ri~  158 (296)
                      +.++|..+++++.+.... .....|+|.+++++.++++|+|||||||+|+++.+++| +.+++||.||+|.++.|++||.
T Consensus       113 l~~a~~~~~~~i~~~~~~~~~~~~g~gtt~~~i~~~~l~vanvGDSRa~l~r~~~~g-~~~~~LT~DH~~~~~~E~~Ri~  191 (324)
T 2i44_A          113 VDDMYKNADNELVKMCEQLNKDYASSTSVTAVLAKGFVAVGHLGDSRIAMGVETPNG-LNCEFLTVDHKPDMPHEKLRIM  191 (324)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCSSCEECEEEEEEETTEEEEEEESSCEEEEEEEETTE-EEEEESCCCCCTTSHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhcCCCCCCCCeEEEEEECCeEEEEEccCceEEEEeccCCC-ceEEECCCCCCCcCHHHHHHHH
Confidence            777777777777543221 12234555555568999999999999999999964344 2469999999999999999999


Q ss_pred             HcCCeeEeecCCC-CceeEecCCCCCCCcccccccCc----ccc---------cccCccccceeEEEEecCCCeEEEEec
Q 022493          159 QCKGRVFCLEDEP-GVHRVWLPNEECPGLAMSRAFGD----YCV---------KDYGLISVPEVTQRHITSRDQFVVLAT  224 (296)
Q Consensus       159 ~~gg~i~~~~~~~-~~~rv~~~~~~~~~l~~tRalGd----~~~---------k~~~v~~~Pdi~~~~l~~~d~fliL~S  224 (296)
                      ++||.+....... ...+      ..+.+.+||++||    ..+         +..+++++|++..+++.++|.||||||
T Consensus       192 ~~Gg~v~~~~~~~~~~~~------~~g~l~~sra~Gd~p~~~~~~~~~g~~~~~~~~v~~~pdv~~~~l~~~d~~llLaS  265 (324)
T 2i44_A          192 RNGGSVEYLHNHNNKPFI------RGGDFSFRKSRGEQPMQLQYSRAFGGKDLKMYGLSNQPDVRVVRVTPQHRVMILAT  265 (324)
T ss_dssp             HTTCEEECCTTCTTSCEE------ECTTHHHHHHTTCCCCCBSSSBCEECGGGTTTTCBCCCEEEEEECCTTEEEEEEEC
T ss_pred             HcCCEEEecccccCCCcc------ccCcccchhhcCCccccceeccccCCccccCCeEeecCEEEEEEcCCCCeEEEEEc
Confidence            9999995432111 1112      2577899999999    444         345578999999999999988999999


Q ss_pred             CCCCCCCCHHHHHHHHhcC----CChHH--HHHHHHHHHHHHHHhhcCCCCCCceEEEEEEccCC
Q 022493          225 DGVWDVISNQEAIQIVSST----PNRAK--SAKRLVECAVHAWKRKRKGIAMDDISAICLFFHSS  283 (296)
Q Consensus       225 DGl~d~l~~~ei~~i~~~~----~~~~~--~a~~L~~~a~~~~~~~~~g~~~DNiTvivv~~~~~  283 (296)
                      |||||+++++|+.+++.+.    .++++  +|+.|++.|+.      +| +.||||||||+|...
T Consensus       266 DGl~d~ls~~ei~~~v~~~~~~~~~~~~~~~a~~L~~~A~~------~g-~~DNiTvivv~~~~~  323 (324)
T 2i44_A          266 DGLWDVMSAAQAVEIAMQARQEGRNPAQALVEMTLAEQQSR------NQ-SADNITAMTVFFKKT  323 (324)
T ss_dssp             HHHHTTCCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHT------TC-CCCCEEEEEEEEC--
T ss_pred             CchhccCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHh------cC-CCCCCEEEEEEeeCC
Confidence            9999999999999999765    57899  99999999998      57 999999999999753


No 9  
>3d8k_A PP2C, protein phosphatase 2C; nysgrc, PSI-II, STR genomics, protein structure initiative, NEW YORK structural research consortium, nysgxrc; 2.71A {Toxoplasma gondii}
Probab=100.00  E-value=1.4e-44  Score=330.47  Aligned_cols=230  Identities=22%  Similarity=0.261  Sum_probs=189.9

Q ss_pred             eeeeecccCCCCCeEEEEEeeCCCcCcHHHHHHHHHHhHHHHHHHHHHHHHhhcCCCCCCCcchhhhhhHHHHHHHHHHH
Q 022493            4 FFVLEQEFGCQADMMFCGIFDGHGPWGHFVAKKVRESMPSSLLCNWQETLAEASLLPDIDLDSDKKTHRFNIWKHSYVKT   83 (296)
Q Consensus         4 ~~~~~~~~~~~~~~~l~~V~DG~Gg~G~~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~   83 (296)
                      ++++...+...++..|||||||||  |+.+|+++++.++..|.+..           .             ..++++.++
T Consensus        35 ~~~~~~~~~~~~~~~lf~V~DGhG--G~~aa~~as~~l~~~l~~~~-----------~-------------~~~~al~~a   88 (377)
T 3d8k_A           35 VVVVEGMLRGRPETRVHAMFDGFQ--GRHSAMWLAQNVMNYLNDLR-----------D-------------VNEEEITRQ   88 (377)
T ss_dssp             EEEEEEECSSCTTEEEEEEEEBSS--SSHHHHHHHHHHHHHHTTCS-----------S-------------SSHHHHHHH
T ss_pred             eEEEecccCCCCCeEEEEEEcCCC--cHHHHHHHHHHHHHHHHHhc-----------c-------------cHHHHHHHH
Confidence            345555565668899999999999  99999999999998875310           0             124566777


Q ss_pred             HHHHHHHHHhccCCCCcCCcceEEEEEEE---------------------------------------------------
Q 022493           84 CAAVDQELEQHRQIDSFYSGTTALTIVRQ---------------------------------------------------  112 (296)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~GtT~~~~~i~---------------------------------------------------  112 (296)
                      |.++++++.+..    ..+|||++++++.                                                   
T Consensus        89 f~~~d~~l~~~~----~~~GtTa~~~~i~~~~~~~~~~~~g~~~~p~~~~~~~~~~~~~g~ta~a~vali~~~~p~~~~~  164 (377)
T 3d8k_A           89 FERMDGDLRAAN----LPGGSSALIIFVRYEKKPTEARVVGRQIVPEGAKEFTSVAEALGGPLMPVVAMNFRRDPRAAKG  164 (377)
T ss_dssp             HHHHHHHHHHHT----CCCCBCEEEEEEEEESSCCCEEEETTEEECCC---CCCHHHHSSCCCCCCEEECGGGCGGGTTC
T ss_pred             HHHHHHHHHhcc----cCCCCceEEEEEeccccccccccccccccccccccccccccccccccccceeeecccccccccC
Confidence            777888887653    2589999988874                                                   


Q ss_pred             CCeEEEEEeccCceEEEEecCCCceeEEEcCccCCCCChhhHHHHHHcCCeeEeecCCCCceeEecCCCCCCCccccccc
Q 022493          113 GEFIMVANVGDSRAVLATTSEDGSLVPVQLTVDFKPNLPYEAERIIQCKGRVFCLEDEPGVHRVWLPNEECPGLAMSRAF  192 (296)
Q Consensus       113 ~~~l~~anvGDSr~~l~~~~~~g~~~~~~lt~dH~~~~~~E~~ri~~~gg~i~~~~~~~~~~rv~~~~~~~~~l~~tRal  192 (296)
                      ++++|+|||||||+|++|   +|  ++++||.||+|.++.|+.||.++||.+..   .++..|+      .+.|.+||||
T Consensus       165 ~~~l~vanvGDSRa~l~r---~g--~~~~LT~DH~~~~~~E~~RI~~~gg~v~~---~~g~~rv------~G~l~vtRal  230 (377)
T 3d8k_A          165 IYTIHVASLGNSRCVLKS---GR--TAIHLSTPHTASSHKERHRVQAAGGVFTT---VNGELLL------GGVVPMTRAF  230 (377)
T ss_dssp             EEEEEEEEESSCEEEEEE---TT--EEEESSCCCSSSSHHHHHHHHTTTCCEEE---CSSSEEE------TTTBSCSBCS
T ss_pred             CCeEEEEEcccceEEEEE---CC--EEEECCcCCCCCCHHHHHHHHHcCCEEEe---cCCcEEE------cCceecceee
Confidence            148999999999999998   46  56999999999999999999999999863   2344565      7789999999


Q ss_pred             Ccccccc--------cCccccceeEEEEecCCCeEEEEecCCCCCCCCHHHHHHHHhc-----CCChHHHHHHHHHHHHH
Q 022493          193 GDYCVKD--------YGLISVPEVTQRHITSRDQFVVLATDGVWDVISNQEAIQIVSS-----TPNRAKSAKRLVECAVH  259 (296)
Q Consensus       193 Gd~~~k~--------~~v~~~Pdi~~~~l~~~d~fliL~SDGl~d~l~~~ei~~i~~~-----~~~~~~~a~~L~~~a~~  259 (296)
                      ||..+|.        ..++++|++..+++.++| |||||||||||+++++|+++.+..     ..+++++|+.|++.|+.
T Consensus       231 Gd~~~k~~~~~~~~~~~v~~~Pdv~~~~l~~~D-~llL~SDGl~d~ls~~e~v~~v~~~~~~~~~~~~~~a~~Lv~~A~~  309 (377)
T 3d8k_A          231 GSFDFKKGGQGKLQQDLVSAVPDVTTFFAYPGD-DIVAGTAGAFAHFRSHAAIAAAIALYPVSPETVLDAAKAMVVNAKR  309 (377)
T ss_dssp             SCGGGSCC---CCSSCSSBCCCEEEEEEECTTC-EEEEECGGGGCSCSSHHHHHHHHTTSCCCGGGHHHHHHHHHHTTTT
T ss_pred             cChhhhcccccccccCccccCCcEEEEEcCCCC-EEEEEECCcccCCCcHHHHHHHHHHhhccCCCHHHHHHHHHHHHHh
Confidence            9999985        248899999999999998 799999999999999998875443     35789999999999998


Q ss_pred             HHHhhcCCCCCCceEEEEEEccCCCC
Q 022493          260 AWKRKRKGIAMDDISAICLFFHSSPL  285 (296)
Q Consensus       260 ~~~~~~~g~~~DNiTvivv~~~~~~~  285 (296)
                            +| +.||||||||+|...+.
T Consensus       310 ------~g-~~DNiTvivv~~~~~~~  328 (377)
T 3d8k_A          310 ------RK-VTKNISTFVRHLPESRT  328 (377)
T ss_dssp             ------SS-CCSCCCEEEEECCSSCC
T ss_pred             ------cC-CCCCEEEEEEEecCCcc
Confidence                  57 99999999999987654


No 10 
>2j4o_A Mitogen-activated protein kinase kinase kinase 7-interacting protein 1; TGF-beta, pseudo-phosphatase, TAK1 binding protein, protein binding; 2.25A {Homo sapiens} PDB: 2pom_A 2pop_A
Probab=100.00  E-value=1e-45  Score=341.14  Aligned_cols=242  Identities=22%  Similarity=0.298  Sum_probs=186.8

Q ss_pred             CCCeEEEEEeeCCCcCcHHHHHHHHHHhHHHHHHHHHHHHHhhcCCCCCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHh
Q 022493           14 QADMMFCGIFDGHGPWGHFVAKKVRESMPSSLLCNWQETLAEASLLPDIDLDSDKKTHRFNIWKHSYVKTCAAVDQELEQ   93 (296)
Q Consensus        14 ~~~~~l~~V~DG~Gg~G~~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~   93 (296)
                      .++..|||||||||  |+.+|+++++.++..|...   .     +....         ..+.+++++.++|..+++.+.+
T Consensus        59 ~~~~~lf~V~DGhG--G~~aa~~as~~l~~~l~~~---~-----~~~~~---------~~~~~~~~l~~af~~~~~~i~~  119 (401)
T 2j4o_A           59 ENNCFLYGVFNGYD--GNRVTNFVAQRLSAELLLG---Q-----LNAEH---------AEADVRRVLLQAFDVVERSFLE  119 (401)
T ss_dssp             TTTEEEEEEEEEES--SSHHHHHHHHHHHHTTSSS---S-----CCTTS---------CHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCeEEEEEEcCCC--CHHHHHHHHHHHHHHHHHh---h-----hhccc---------chhhHHHHHHHHHHHHHHHHHH
Confidence            46788999999999  9999999999998877521   0     00000         0123444555555555544432


Q ss_pred             cc-------------------------C-----------CCCcCCcceEEEEEEECCeEEEEEeccCceEEEEecCCCce
Q 022493           94 HR-------------------------Q-----------IDSFYSGTTALTIVRQGEFIMVANVGDSRAVLATTSEDGSL  137 (296)
Q Consensus        94 ~~-------------------------~-----------~~~~~~GtT~~~~~i~~~~l~~anvGDSr~~l~~~~~~g~~  137 (296)
                      ..                         .           .....+|||+++++|.++++|+|||||||+|++|.+.+| +
T Consensus       120 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~GtTa~~~li~~~~l~vanvGDSRa~l~r~~~~g-~  198 (401)
T 2j4o_A          120 SIDDALAEKASLQSQLPEGVPQHQLPPQYQKILERLKTLEREISGGAMAVVAVLLNNKLYVANVGTNRALLCKSTVDG-L  198 (401)
T ss_dssp             HHHHHHHHHHHHHHTSCTTCCSSCSCGGGHHHHHHHHHHHHHHCCEEEEEEEEEETTEEEEEEESSCEEEEEEECSSS-E
T ss_pred             HHHHHHhhhhcccccccccccccccccccchhhhhhhcccccCCCccCEEEEEEECCEEEEEEccCceEEEEEcCCCC-c
Confidence            10                         0           012368999999999999999999999999999976556 5


Q ss_pred             eEEEcCccCCCCChhhHHHHHHcCCeeEeecCCCCceeEecCCCCCCCcccccccCcccccc-------------cCccc
Q 022493          138 VPVQLTVDFKPNLPYEAERIIQCKGRVFCLEDEPGVHRVWLPNEECPGLAMSRAFGDYCVKD-------------YGLIS  204 (296)
Q Consensus       138 ~~~~lt~dH~~~~~~E~~ri~~~gg~i~~~~~~~~~~rv~~~~~~~~~l~~tRalGd~~~k~-------------~~v~~  204 (296)
                      .+++||.||+|.++.|++||.++||.+....          ..+..+++.+||||||..+|.             .++++
T Consensus       199 ~~~~LT~DH~~~~~~E~~Ri~~~Gg~v~~~~----------~~r~~g~l~vtRalGd~~~k~~~~~~~~~~~~~~~~v~~  268 (401)
T 2j4o_A          199 QVTQLNVDHTTENEDELFRLSQLGLDAGKIK----------QVGIICGQESTRRIGDYKVKYGYTDIDLLSAAKSKPIIA  268 (401)
T ss_dssp             EEEECSCCCSTTSHHHHHHHHTTTCCHHHHH----------HHCCBTTBCCSBCEECHHHHHSGGGSTTTTTCSSCSSBC
T ss_pred             eEEECCCCCCCCCHHHHHHHHHcCCCeeecc----------CccccCCcccccccCCHhhcccccccccccccCCCCeec
Confidence            6799999999999999999999998763211          113367789999999998874             45899


Q ss_pred             cceeEE-EEecCCCeEEEEecCCCCCCC--------CHHHHHHHHhc----CCChHHHHHHHHHHHHHHHHhhc-CCCC-
Q 022493          205 VPEVTQ-RHITSRDQFVVLATDGVWDVI--------SNQEAIQIVSS----TPNRAKSAKRLVECAVHAWKRKR-KGIA-  269 (296)
Q Consensus       205 ~Pdi~~-~~l~~~d~fliL~SDGl~d~l--------~~~ei~~i~~~----~~~~~~~a~~L~~~a~~~~~~~~-~g~~-  269 (296)
                      +||+.. +++.++|.|||||||||||++        +++||.+++.+    ..+++++|+.|++.|+..|.... +| + 
T Consensus       269 ~Pdv~~~~~l~~~d~flvLaSDGlwd~l~~~~~~~~s~~ei~~~v~~~l~~~~~~~~~a~~Lv~~A~~~~~~a~~~G-~~  347 (401)
T 2j4o_A          269 EPEIHGAQPLDGVTGFLVLMSEGLYKALEAAHGPGQANQEIAAMIDTEFAKQTSLDAVAQAVVDRVKRIHSDTFASG-GE  347 (401)
T ss_dssp             CCEEEEEEECTTCCEEEEEECHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHSC-SS
T ss_pred             cceEEEeEEeCCCCcEEEEEccchhhcccccccCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhhhhhcC-Cc
Confidence            999996 999999999999999999999        89999999986    46899999999999998664321 34 4 


Q ss_pred             -------CCceEEEEEEccCCCCC
Q 022493          270 -------MDDISAICLFFHSSPLS  286 (296)
Q Consensus       270 -------~DNiTvivv~~~~~~~~  286 (296)
                             .||||||||+|......
T Consensus       348 ~~~~~~~~DNiTvivv~~~~~~~~  371 (401)
T 2j4o_A          348 RARFCPRHEDMTLLVRNFGYPLGE  371 (401)
T ss_dssp             GGGGCSEECCEEEEEEEEBCCCC-
T ss_pred             ccccCCCCCCeEEEEEEcCCCCcc
Confidence                   89999999999865443


No 11 
>2pnq_A [pyruvate dehydrogenase [lipoamide]]-phosphatase 1; pyruvate dehydrogenase phosphatase 1, catalytic subunit, PDP1C, hydrolase; 1.81A {Rattus norvegicus} PDB: 3n3c_A 3mq3_A
Probab=100.00  E-value=7.5e-45  Score=340.27  Aligned_cols=258  Identities=28%  Similarity=0.338  Sum_probs=186.4

Q ss_pred             CCeEEEEEeeCCCcCcHHHHHHHHHHhHHHHHHHH------HHH---HHhh----------cCCCCCCC-cchh-----h
Q 022493           15 ADMMFCGIFDGHGPWGHFVAKKVRESMPSSLLCNW------QET---LAEA----------SLLPDIDL-DSDK-----K   69 (296)
Q Consensus        15 ~~~~l~~V~DG~Gg~G~~~s~~~~~~l~~~l~~~~------~~~---~~~~----------~~~~~~~~-~~~~-----~   69 (296)
                      .+..|||||||||  |+.+|+++++.++.++...+      ...   ....          ..++++.. +...     .
T Consensus        64 ~~~~lfgVfDGHG--G~~aa~~as~~L~~~i~~~l~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~y~~~~  141 (467)
T 2pnq_A           64 TRGMLLGVFDGHA--GCACSQAVSERLFYYIAVSLLPHETLLEIENAVESGRALLPILQWHKHPNDYFSKEASKLYFNGL  141 (467)
T ss_dssp             SSCEEEEEEEEES--SSHHHHHHHHHHHHHHHHHHCCHHHHHHHHTTTC----CCCCEEECCCTTCCCCSTTHHHHHHHH
T ss_pred             CCcEEEEEECCCC--CHHHHHHHHHHHHHHHHHhhcchhhhhhhhhhhhccccccccccccccccccchhhhhhhhhcch
Confidence            4678999999999  99999999999999987542      111   0000          00011100 0000     0


Q ss_pred             h-------hhH----H--HHHHHHHHHHHHHHHHHHhccC------------CCCcCCcceEEEEEEECCeEEEEEeccC
Q 022493           70 T-------HRF----N--IWKHSYVKTCAAVDQELEQHRQ------------IDSFYSGTTALTIVRQGEFIMVANVGDS  124 (296)
Q Consensus        70 ~-------~~~----~--~l~~~l~~~~~~~~~~~~~~~~------------~~~~~~GtT~~~~~i~~~~l~~anvGDS  124 (296)
                      .       ...    +  .+.++|.++|..+++++.....            .....+|||++++++.++++||||+|||
T Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~aL~~af~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~GtTa~v~li~~~~l~vAnvGDS  221 (467)
T 2pnq_A          142 RTYWQELIDLNTGESADIDVKEALINAFKRLDNDISLEAQVGDPNSFLNYLVLRVAFSGATACVAHVDGVDLHVANTGDS  221 (467)
T ss_dssp             HHHHHHHHHC------CCCHHHHHHHHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHSEECEEEEEEETTEEEEEEESSC
T ss_pred             hhhhhhhccccccccchhhHHHHHHHHHHHHHHHHHHhhhhcccccccccccccCCCCcceEEEEEEECCEEEEEECCCc
Confidence            0       000    0  3556777777777777654321            1224699999999999999999999999


Q ss_pred             ceEEEEecCCCceeEEEcCccCCCCChhhHHHHHHcCCeeEeecCCCCceeEecCCCCCCCcccccccCcccccc-----
Q 022493          125 RAVLATTSEDGSLVPVQLTVDFKPNLPYEAERIIQCKGRVFCLEDEPGVHRVWLPNEECPGLAMSRAFGDYCVKD-----  199 (296)
Q Consensus       125 r~~l~~~~~~g~~~~~~lt~dH~~~~~~E~~ri~~~gg~i~~~~~~~~~~rv~~~~~~~~~l~~tRalGd~~~k~-----  199 (296)
                      |+|+++.+.+|.|.+++||.||++.++.|++||.+.|+....       ..++...+..|.+.+||||||..+|.     
T Consensus       222 Ra~l~r~~~~g~~~~~~LT~DH~~~~~~E~~Ri~~~g~~~~~-------~~~~~~~Rv~G~l~vtRAlGd~~~K~~~~~~  294 (467)
T 2pnq_A          222 RAMLGVQEEDGSWSAVTLSNDHNAQNERELQRLKLEHPKNEA-------KSVVKQDRLLGLLMPFRAFGDVKFKWSIDLQ  294 (467)
T ss_dssp             EEEEEEECTTSCEEEEECCCCCSTTCHHHHHHHHHTSCGGGH-------HHHBSSSSBTTTBSSSBCEECGGGTSCHHHH
T ss_pred             eEEEEEecCCCcEEEEECCCCCCCCCHHHHHHHHHcCCCccc-------ceeEecCccccccccchhcCchhhcccchhh
Confidence            999999766788888999999999999999999999864321       01122334477799999999998873     


Q ss_pred             ---------------------------cCccccceeEEEEecCCCeEEEEecCCCCCCCCHHHHHHHHhcCC------Ch
Q 022493          200 ---------------------------YGLISVPEVTQRHITSRDQFVVLATDGVWDVISNQEAIQIVSSTP------NR  246 (296)
Q Consensus       200 ---------------------------~~v~~~Pdi~~~~l~~~d~fliL~SDGl~d~l~~~ei~~i~~~~~------~~  246 (296)
                                                 ..++++|+|..++|.++|.|||||||||||+|+++|+++++....      +|
T Consensus       295 ~~~~~~~~G~~~~~~~~~~~~~~~~~~p~v~~~Pdv~~~~l~~~D~fLVLaSDGLwd~ls~~eiv~iv~~~~~~~~~~~p  374 (467)
T 2pnq_A          295 KRVIESGPDQLNDNEYTKFIPPNYHTPPYLTAEPEVTYHRLRPQDKFLVLATDGLWETMHRQDVVRIVGEYLTGMHHQQP  374 (467)
T ss_dssp             HHHHSSSCC-----------CTTCSSSCCCBCCCEEEEEECCTTEEEEEEECHHHHTTSCHHHHHHHHHHHHTTCSSCC-
T ss_pred             hhhhcccccccccccccccccccccCCCcccccceEEEEEcCCCCeEEEEEecCccccCChHHHHHHHHHHHhhccccCc
Confidence                                       237899999999999999999999999999999999999996542      23


Q ss_pred             ------------------------------HHHHHHHHHHHHHHHHh-----------------hcCCCCCCceEEEEEE
Q 022493          247 ------------------------------AKSAKRLVECAVHAWKR-----------------KRKGIAMDDISAICLF  279 (296)
Q Consensus       247 ------------------------------~~~a~~L~~~a~~~~~~-----------------~~~g~~~DNiTvivv~  279 (296)
                                                    +.+|..|++.|+..+..                 ..|. ..||||||||+
T Consensus       375 ~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~naA~~Lir~Al~~~~~Ge~~~~~~~~ll~~~~~~~R~-~~DdITViVv~  453 (467)
T 2pnq_A          375 IAVGGYKVTLGQMHGLLTERRAKMSSVFEDQNAATHLIRHAVGNNEFGAVDHERLSKMLSLPEELARM-YRDDITIIVVQ  453 (467)
T ss_dssp             ------------------------------CCHHHHHHHHHHC--------------------------CCSCEEEEEEE
T ss_pred             ccccccCccHHHHHHHHHHhhhcccCCchhhHHHHHHHHHHhcCCCcCcchHHHHHhhhcCCcccccc-CCCCcEEEEEE
Confidence                                          56789999999975410                 0122 68999999999


Q ss_pred             ccC
Q 022493          280 FHS  282 (296)
Q Consensus       280 ~~~  282 (296)
                      |+.
T Consensus       454 ~~~  456 (467)
T 2pnq_A          454 FNS  456 (467)
T ss_dssp             ECH
T ss_pred             eCc
Confidence            964


No 12 
>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A
Probab=100.00  E-value=1.1e-43  Score=326.67  Aligned_cols=234  Identities=28%  Similarity=0.417  Sum_probs=187.1

Q ss_pred             CCeEEEEEeeCCCcCcHHHHHHHHHHhHHHHHHHHHHHHHhhcCCCCCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHhc
Q 022493           15 ADMMFCGIFDGHGPWGHFVAKKVRESMPSSLLCNWQETLAEASLLPDIDLDSDKKTHRFNIWKHSYVKTCAAVDQELEQH   94 (296)
Q Consensus        15 ~~~~l~~V~DG~Gg~G~~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~   94 (296)
                      ++..+|+||||||  |+.+++++++.++..+.+.+..    .             ....+.++.++..+...+.+.....
T Consensus       147 ~~~~l~~VaDG~G--G~~~g~~as~~~~~~l~~~~~~----~-------------~~~~~~l~~a~~~~n~~i~~~~~~~  207 (389)
T 4da1_A          147 DEVLYFAVYDGHG--GPAAADFCHTHMEKCIMDLLPK----E-------------KNLETLLTLAFLEIDKAFSSHARLS  207 (389)
T ss_dssp             SSEEEEEEEEEES--STHHHHHHHHHHHHHHHHHTTT----C-------------CCHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             CCEEEEEEEECCC--CHHHHHHHHHHHHHHHHHHhcc----c-------------cCHHHHHHHHHHHHHHHHHHHhhhc
Confidence            6788999999999  9999999999999888754321    0             0112244444444444444333332


Q ss_pred             cCCCCcCCcceEEEEEEECC-eEEEEEeccCceEEEEecCCCceeEEEcCccCCCCChhhHHHHHHcCCeeEeecCCCCc
Q 022493           95 RQIDSFYSGTTALTIVRQGE-FIMVANVGDSRAVLATTSEDGSLVPVQLTVDFKPNLPYEAERIIQCKGRVFCLEDEPGV  173 (296)
Q Consensus        95 ~~~~~~~~GtT~~~~~i~~~-~l~~anvGDSr~~l~~~~~~g~~~~~~lt~dH~~~~~~E~~ri~~~gg~i~~~~~~~~~  173 (296)
                      +......+|||++++++.++ ++|+|||||||+|++|   +|  .+++||.||++.++.|++||..+||.+....  .+.
T Consensus       208 ~~~~~~~~GtT~~~~li~~~~~l~vanvGDSRayl~r---~g--~~~~LT~DHs~~~~~E~~Ri~~~gG~v~~~~--~~~  280 (389)
T 4da1_A          208 ADATLLTSGTTATVALLRDGIELVVASVGDSRAILCR---KG--KPMKLTIDHTPERKDEKERIKKCGGFVAWNS--LGQ  280 (389)
T ss_dssp             SCGGGGGCEECEEEEEEETTTEEEEEEESSCEEEEEE---TT--EEEECCCCCCTTSHHHHHHHHHHTCCEECC-----C
T ss_pred             cccccCCCCCeEEEEEEEcCCeEEEEEeeccEEEEEE---CC--EeEEeCCCCCCCCHHHHHHHHHcCCeEeccc--CCC
Confidence            23334569999999999866 9999999999999998   46  5699999999999999999999999987532  122


Q ss_pred             eeEecCCCCCCCcccccccCcccccccCccccceeEEEEecCC-CeEEEEecCCCCCCCCHHHHHHHHhcCCChHHHHHH
Q 022493          174 HRVWLPNEECPGLAMSRAFGDYCVKDYGLISVPEVTQRHITSR-DQFVVLATDGVWDVISNQEAIQIVSSTPNRAKSAKR  252 (296)
Q Consensus       174 ~rv~~~~~~~~~l~~tRalGd~~~k~~~v~~~Pdi~~~~l~~~-d~fliL~SDGl~d~l~~~ei~~i~~~~~~~~~~a~~  252 (296)
                      .|+      .+.+.+||+||+..+|+.+++++|++..+++.++ ++|||||||||||++++++|.+++.+..+++++|+.
T Consensus       281 ~~~------~g~l~ltRalGd~~~k~~~v~~~pdi~~~~l~~~~dd~llL~SDGL~d~l~~~ei~~il~~~~~~~~~a~~  354 (389)
T 4da1_A          281 PHV------NGRLAMTRSIGDLDLKTSGVIAEPETKRIKLHHADDSFLVLTTDGINFMVNSQEICDFVNQCHDPNEAAHA  354 (389)
T ss_dssp             CEE------TTTBSCSBCEECGGGGGGTCBCCCEEEEEECCSSSCEEEEEECHHHHTTCCHHHHHHHHHHSSSHHHHHHH
T ss_pred             ccC------CCeEeeEeeeCChhhccCCCCCCCceEEEEEcCCCCcEEEEEeCCcccCCCHHHHHHHHHhcCCHHHHHHH
Confidence            333      5678999999999999999999999999999975 679999999999999999999999998889999999


Q ss_pred             HHHHHHHHHHhhcCCCCCCceEEEEEEccCCCCCc
Q 022493          253 LVECAVHAWKRKRKGIAMDDISAICLFFHSSPLSQ  287 (296)
Q Consensus       253 L~~~a~~~~~~~~~g~~~DNiTvivv~~~~~~~~~  287 (296)
                      |++.|+.+      | +.||||||||+|......+
T Consensus       355 Lv~~A~~~------g-~~DNiTvivv~~~~~~~~~  382 (389)
T 4da1_A          355 VTEQAIQY------G-TEDNSTAVVVPFGAWGKYK  382 (389)
T ss_dssp             HHHHHHHH------T-CCSCEEEEEEEECCC----
T ss_pred             HHHHHHHc------C-CCCCeEEEEEEecCCCCCC
Confidence            99999984      7 9999999999998766543


No 13 
>2isn_A NYSGXRC-8828Z, phosphatase; pathogenic strain, praseodymium, sulfate structural genomics, PSI-2, protein structure initiative; 1.90A {Toxoplasma gondii}
Probab=100.00  E-value=9.9e-44  Score=323.81  Aligned_cols=236  Identities=28%  Similarity=0.374  Sum_probs=184.9

Q ss_pred             CceeeeeecccCCCCCeEEEEEeeCCCcCcHHHHHHHHHHhHHHHHHHHHHHHHhhcCCCCCCCcchhhhhhHHHHHHHH
Q 022493            1 MCSFFVLEQEFGCQADMMFCGIFDGHGPWGHFVAKKVRESMPSSLLCNWQETLAEASLLPDIDLDSDKKTHRFNIWKHSY   80 (296)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~l~~V~DG~Gg~G~~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l   80 (296)
                      |..++++..+|...++..||+||||||  |+.+|+++++.|+.++.+.           +.+             ....+
T Consensus        27 nED~~~v~~~~~~~~~~~lf~VfDGHG--G~~as~~a~~~l~~~l~~~-----------~~~-------------~~~~l   80 (364)
T 2isn_A           27 DEDAILVSAPATSRPNVRIKAVFDGHA--GEATSQYCAKHAAKHLGKL-----------SEF-------------TFAEV   80 (364)
T ss_dssp             CCEEEEEECC----CCEEEEEEEEEES--CSHHHHHHHHHHHHHHTTC-----------SSC-------------CHHHH
T ss_pred             CCCeeEEeccCCCCCCeEEEEEEECCC--CHHHHHHHHHHHHHHHHHh-----------hcc-------------cHHHH
Confidence            456677777776678899999999999  9999999999998877521           000             01344


Q ss_pred             HHHHHHHHHHHHhccCCCCcCCcceEEEEEEEC-----------------------------------------------
Q 022493           81 VKTCAAVDQELEQHRQIDSFYSGTTALTIVRQG-----------------------------------------------  113 (296)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~GtT~~~~~i~~-----------------------------------------------  113 (296)
                      .+++..+++.+.+.... ...+|||++++++.+                                               
T Consensus        81 ~~a~~~~d~~i~~~~~~-~~~~GtT~v~~~i~~~~~p~~~~~~g~~~~~~~~~~~f~~l~~~~~~~~~~~~~~~~~~~~~  159 (364)
T 2isn_A           81 KKACLSLDAEIIRKLGP-KHVAGSTGIIVAIERLSAPVVENVVGREIVPRAHEETFVPLEKLIQEEEEAEHPELVGRYPR  159 (364)
T ss_dssp             HHHHHHHHHHHHHHHCS-SSCCEECEEEEEEEECSSCEEEEEETTEECCC-----CCCHHHHHHHHHHC-----CCSSCC
T ss_pred             HHHHHHHHHHHHHhccc-CCCCCcceehhhhhccccccccccccccccccccccchhhhhhhhhhhhhcccccccccccc
Confidence            55566666666443222 246899999988852                                               


Q ss_pred             -------------CeEEEEEeccCceEEEEecCCCceeEEEcCccCCCCChhhHHHHHHcCCeeEeecCCCCceeEecCC
Q 022493          114 -------------EFIMVANVGDSRAVLATTSEDGSLVPVQLTVDFKPNLPYEAERIIQCKGRVFCLEDEPGVHRVWLPN  180 (296)
Q Consensus       114 -------------~~l~~anvGDSr~~l~~~~~~g~~~~~~lt~dH~~~~~~E~~ri~~~gg~i~~~~~~~~~~rv~~~~  180 (296)
                                   .++|+|||||||+|++++  +|  .+++||.||++.++.|+.||.++||.+...    +.+|+    
T Consensus       160 ~~~~~~~~~~~g~~~l~vanvGDSRayl~~r--~g--~~~~LT~DH~~~~~~e~~rI~~~gG~v~~~----~~~rv----  227 (364)
T 2isn_A          160 VPDVQQKTIPAGSFLVTAINIGDSRATLIHS--DG--GLTRLSKDHKPNHPTEASRIEKAGGSVETF----DVPRV----  227 (364)
T ss_dssp             CCCCEEEEECTTCEEEEEEEESSCEEEEECT--TS--CEEECCCCCCTTSHHHHHHHHHTTCCEEES----SSEEE----
T ss_pred             cccccccccccCccEEEEEECccCEEEEEee--CC--EEEEcCcCCCCCCHHHHHHHHHcCCeEecC----CCccc----
Confidence                         389999999999999952  56  459999999999999999999999998752    33454    


Q ss_pred             CCCCCcccccccCcccccc--------cCccccceeEEEEecCCCeEEEEecCCCCCCCC--HHHHHHHH-----hcCCC
Q 022493          181 EECPGLAMSRAFGDYCVKD--------YGLISVPEVTQRHITSRDQFVVLATDGVWDVIS--NQEAIQIV-----SSTPN  245 (296)
Q Consensus       181 ~~~~~l~~tRalGd~~~k~--------~~v~~~Pdi~~~~l~~~d~fliL~SDGl~d~l~--~~ei~~i~-----~~~~~  245 (296)
                        .+.+.+||||||..+|.        .+++++||+..+++.++| |||||||||||+++  ++++.+++     ....+
T Consensus       228 --~g~l~ltRalGd~~~k~~~~l~~~~~~v~~~Pdv~~~~l~~~D-~llL~SDGl~d~l~~~~~~v~~~~~~~~~~~~~~  304 (364)
T 2isn_A          228 --DGVLALSRAFGDSDFKMNPNLPPEEQKVIAVPDVRQFYALSSD-LLLLACDGVYEPSGMDWAYVRDLTVAEMQRSKGD  304 (364)
T ss_dssp             --TTTBSCSBCEECGGGSCCCSSCGGGSSSBCCCEEEEEEECTTC-EEEEECHHHHCSSSCCHHHHHHHHHHHHHHTTSC
T ss_pred             --CCceeeEEEecchhhccccccCcccCceEEEeEEEEEECCCCC-EEEEEcCCCCCCCCCCHHHHHHHHHHHHhhcCCC
Confidence              56789999999999874        357899999999999988 89999999999976  77777654     34567


Q ss_pred             hHHHHHHHHHHHHHHHHhhcCCCCCCceEEEEEEccCCCC
Q 022493          246 RAKSAKRLVECAVHAWKRKRKGIAMDDISAICLFFHSSPL  285 (296)
Q Consensus       246 ~~~~a~~L~~~a~~~~~~~~~g~~~DNiTvivv~~~~~~~  285 (296)
                      ++++|+.|++.|+.      +| +.||||||||+|...+.
T Consensus       305 ~~~~a~~Lv~~A~~------~g-~~DNiTvivv~~~~~~~  337 (364)
T 2isn_A          305 LEEVAARVMDYAYD------MN-SQDNISVMLVAFHNQEV  337 (364)
T ss_dssp             HHHHHHHHHHHHHH------TT-CCSCEEEEEEEECSSCC
T ss_pred             HHHHHHHHHHHHHh------cC-CCCCEEEEEEEcCCCCC
Confidence            99999999999998      57 99999999999976543


No 14 
>2pk0_A Serine/threonine protein phosphatase STP1; SI motif, signaling protein; 2.65A {Streptococcus agalactiae}
Probab=100.00  E-value=2.7e-37  Score=267.88  Aligned_cols=216  Identities=21%  Similarity=0.311  Sum_probs=162.2

Q ss_pred             CCeEEEEEeeCCCcCcHHHHHHHHHHhHHHHHHHHHHHHHhhcCCCCCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHhc
Q 022493           15 ADMMFCGIFDGHGPWGHFVAKKVRESMPSSLLCNWQETLAEASLLPDIDLDSDKKTHRFNIWKHSYVKTCAAVDQELEQH   94 (296)
Q Consensus        15 ~~~~l~~V~DG~Gg~G~~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~   94 (296)
                      ++..+|+||||||  |+.+++++++.+.+.+..++...        ... .       .+.+...+.+++..+++.+.+.
T Consensus        32 ~~~~~~~V~DG~G--g~~~~~~as~~~~~~l~~~~~~~--------~~~-~-------~~~~~~~l~~~~~~~~~~l~~~   93 (250)
T 2pk0_A           32 AGVPLIILADGMG--GHRAGNIASEMTVTDLGSDWAET--------DFS-E-------LSEIRDWMLVSIETENRKIYEL   93 (250)
T ss_dssp             TCCEEEEEEEEEC--TTTHHHHHHHHHHHHHHHHHTTC--------CCC-S-------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCcEEEEEEeCCC--CcHHHHHHHHHHHHHHHHHHhhc--------ccC-C-------hhhHHHHHHHHHHHHHHHHHHH
Confidence            4678999999999  88888888888888776332110        000 0       1234555556666666665543


Q ss_pred             cCCC-CcCCcceEEEEEEECCeEEEEEeccCceEEEEecCCCceeEEEcCccCCCCChhhHHHHHHcCCeeEeecCCCCc
Q 022493           95 RQID-SFYSGTTALTIVRQGEFIMVANVGDSRAVLATTSEDGSLVPVQLTVDFKPNLPYEAERIIQCKGRVFCLEDEPGV  173 (296)
Q Consensus        95 ~~~~-~~~~GtT~~~~~i~~~~l~~anvGDSr~~l~~~~~~g~~~~~~lt~dH~~~~~~E~~ri~~~gg~i~~~~~~~~~  173 (296)
                      .... ...+|||++++++.+++++++|+||||+|++|   +|  .+++||.||++.++     +.+.| .+...+.... 
T Consensus        94 ~~~~~~~~~gtT~~~~~i~~~~l~~anvGDsr~~l~r---~g--~~~~lt~dh~~~~~-----~~~~g-~i~~~~~~~~-  161 (250)
T 2pk0_A           94 GQSDDYKGMGTTIEAVAIVGDNIIFAHVGDSRIGIVR---QG--EYHLLTSDHSLVNE-----LVKAG-QLTEEEAASH-  161 (250)
T ss_dssp             HHHTTCTTCEECEEEEEEETTEEEEEEESSCEEEEEE---TT--EEEECCCCCBHHHH-----HHHTT-SSCHHHHHTC-
T ss_pred             HhhCCCCCCcceEEEEEEECCeEEEEEeCCCeEEEEc---CC--cEEEeCCCCCHHHH-----HHHcC-CCCHHHHHhC-
Confidence            2211 24589999999999999999999999999998   45  46999999998543     22333 3322111111 


Q ss_pred             eeEecCCCCCCCcccccccCcccccccCccccceeEEEEecCCCeEEEEecCCCCCCCCHHHHHHHHhcCCChHHHHHHH
Q 022493          174 HRVWLPNEECPGLAMSRAFGDYCVKDYGLISVPEVTQRHITSRDQFVVLATDGVWDVISNQEAIQIVSSTPNRAKSAKRL  253 (296)
Q Consensus       174 ~rv~~~~~~~~~l~~tRalGd~~~k~~~v~~~Pdi~~~~l~~~d~fliL~SDGl~d~l~~~ei~~i~~~~~~~~~~a~~L  253 (296)
                               .+.+.+||+||+..      .++|++..+++.++| +||||||||||+++++++.+++.+..+++++|+.|
T Consensus       162 ---------~~~~~ltralG~~~------~~~p~~~~~~l~~gd-~lll~SDGl~d~l~~~~i~~~~~~~~~~~~~a~~L  225 (250)
T 2pk0_A          162 ---------PQKNIITQSIGQAN------PVEPDLGVHLLEEGD-YLVVNSDGLTNMLSNADIATVLTQEKTLDDKNQDL  225 (250)
T ss_dssp             ---------CSCCCBSCCBSCSS------CCCCEEEEEECCTTC-EEEEECHHHHTTSCHHHHHHHHTSSSCHHHHHHHH
T ss_pred             ---------CCcceEEeecCCCC------CccceEEEEEcCCCC-EEEEECCCCCCCcCHHHHHHHHhcCCCHHHHHHHH
Confidence                     23468999999863      568999999999998 69999999999999999999999888899999999


Q ss_pred             HHHHHHHHHhhcCCCCCCceEEEEEEccCC
Q 022493          254 VECAVHAWKRKRKGIAMDDISAICLFFHSS  283 (296)
Q Consensus       254 ~~~a~~~~~~~~~g~~~DNiTvivv~~~~~  283 (296)
                      ++.|+.      +| +.||||+||+++...
T Consensus       226 ~~~a~~------~g-~~DniTvivv~~~~~  248 (250)
T 2pk0_A          226 ITLANH------RG-GLDNITVALVYVESE  248 (250)
T ss_dssp             HHHHHH------TT-CCSCEEEEEEEECC-
T ss_pred             HHHHHH------cC-CCCCeEEEEEEeeCC
Confidence            999998      47 899999999999753


No 15 
>2j82_A TPPHA, protein serine-threonine phosphatase; PP2C family phosphatase, hydrolase; 1.28A {Synechococcus elongatus} PDB: 2j86_A 2y09_A 2xzv_A
Probab=100.00  E-value=2e-35  Score=254.52  Aligned_cols=210  Identities=20%  Similarity=0.219  Sum_probs=149.5

Q ss_pred             CeEEEEEeeCCCcCcHHHHHHHHHHhHHHHHHHHHHHHHhhcCCCCCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHhcc
Q 022493           16 DMMFCGIFDGHGPWGHFVAKKVRESMPSSLLCNWQETLAEASLLPDIDLDSDKKTHRFNIWKHSYVKTCAAVDQELEQHR   95 (296)
Q Consensus        16 ~~~l~~V~DG~Gg~G~~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~   95 (296)
                      +. +|+||||||  |+.+++++++.+.+.+.+.+........                +.+..++.+++..+++.+.+..
T Consensus        27 ~~-~~~V~DG~G--g~~~~~~as~~~~~~l~~~~~~~~~~~~----------------~~~~~~l~~~~~~~~~~l~~~~   87 (240)
T 2j82_A           27 QR-FFIVADGMG--GHAGGEEASRLAVDHIRQYLETHLEDLQ----------------HDPVTLLRQAFLAANHAIVEQQ   87 (240)
T ss_dssp             CC-EEEEEEBC-----CHHHHHHHHHHHHHHHHHHHHHHHHT----------------TSHHHHHHHHHHHHHHHHHHHH
T ss_pred             Ce-EEEEEcCCC--CchHHHHHHHHHHHHHHHHHHhcccccc----------------hhHHHHHHHHHHHHHHHHHHHh
Confidence            44 999999999  7767777777777666654433211000                1344555666666666665443


Q ss_pred             CC--CCcCCcceEEEEEEE--CCeEEEEEeccCceEEEEecCCCceeEEEcCccCCCCChhhHHHHHHcCCeeEeecCCC
Q 022493           96 QI--DSFYSGTTALTIVRQ--GEFIMVANVGDSRAVLATTSEDGSLVPVQLTVDFKPNLPYEAERIIQCKGRVFCLEDEP  171 (296)
Q Consensus        96 ~~--~~~~~GtT~~~~~i~--~~~l~~anvGDSr~~l~~~~~~g~~~~~~lt~dH~~~~~~E~~ri~~~gg~i~~~~~~~  171 (296)
                      ..  ....+|||++++++.  +++++++|+||||+|++|   +|  .+.+||.||++..+     +.+.| .+...+...
T Consensus        88 ~~~~~~~~~gtT~~~~~i~~~~~~l~~anvGDsr~~l~r---~~--~~~~lt~dh~~~~~-----~~~~g-~i~~~~~~~  156 (240)
T 2j82_A           88 RQNSARADMGTTAVVILLDEKGDRAWCAHVGDSRIYRWR---KD--QLQQITSDHTWIAQ-----AVQLG-SLTIEQARQ  156 (240)
T ss_dssp             TTSCSCTTCCBCEEEEEECTTSSEEEEEEESSCEEEEEE---TT--EEEECSCCCBHHHH-----C--------------
T ss_pred             hcccCCCCCCceEEEEEEEecCCEEEEEEEccCceEEEe---CC--EEEEECCCCcHHHH-----HHHcC-CCCHHHHhc
Confidence            22  223479999999999  999999999999999998   45  56999999997543     22333 233221111


Q ss_pred             CceeEecCCCCCCCcccccccCcccccccCccccceeEEEEecCCCeEEEEecCCCCCCCCHHHHHHHHhcCCChHHHHH
Q 022493          172 GVHRVWLPNEECPGLAMSRAFGDYCVKDYGLISVPEVTQRHITSRDQFVVLATDGVWDVISNQEAIQIVSSTPNRAKSAK  251 (296)
Q Consensus       172 ~~~rv~~~~~~~~~l~~tRalGd~~~k~~~v~~~Pdi~~~~l~~~d~fliL~SDGl~d~l~~~ei~~i~~~~~~~~~~a~  251 (296)
                      .          .+.+.+||+||+.      ..++|++..+++.++|. ||||||||||+++++++.+++. ..+++++|+
T Consensus       157 ~----------~~~~~ltralG~~------~~~~p~~~~~~l~~gd~-lll~SDGl~d~l~~~~i~~~l~-~~~~~~~a~  218 (240)
T 2j82_A          157 H----------PWRHVLSQCLGRE------DLSQIDIQPIDLEPGDR-LLLCSDGLTEELTDDVISIYLS-EPNVQKAAA  218 (240)
T ss_dssp             -------------CCCBSCCBSCT------TCCCCEEEEEECCTTCE-EEEECHHHHTTSCHHHHHHHHT-CSSHHHHHH
T ss_pred             C----------CCcCeEeecCCCC------CceeEEEEEEeeCCCCE-EEEECCCCCCCCCHHHHHHHHc-cCCHHHHHH
Confidence            1          2346899999986      35689999999999984 8999999999999999999998 778999999


Q ss_pred             HHHHHHHHHHHhhcCCCCCCceEEEEEEc
Q 022493          252 RLVECAVHAWKRKRKGIAMDDISAICLFF  280 (296)
Q Consensus       252 ~L~~~a~~~~~~~~~g~~~DNiTvivv~~  280 (296)
                      .|++.|+.      +| +.||||+||+++
T Consensus       219 ~l~~~a~~------~g-~~DniTvivv~~  240 (240)
T 2j82_A          219 ALVDAAKT------HG-GRDNVTVVVISV  240 (240)
T ss_dssp             HHHHHHHH------TT-CCSCEEEEEEEC
T ss_pred             HHHHHHHH------cC-CCCCeEEEEEeC
Confidence            99999998      47 899999999975


No 16 
>2jfr_A Ser-Thr phosphatase MSPP; hydrolase, PPM phosphatase, manganese, phosphate; 0.83A {Mycobacterium smegmatis} PDB: 2jfs_A 2jft_A 2v06_A
Probab=100.00  E-value=3.3e-36  Score=258.49  Aligned_cols=202  Identities=19%  Similarity=0.227  Sum_probs=151.6

Q ss_pred             eEEEEEeeCCCcCcHHHHHHHHHHhHHHHHHHHHHHHHhhcCCCCCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHhccC
Q 022493           17 MMFCGIFDGHGPWGHFVAKKVRESMPSSLLCNWQETLAEASLLPDIDLDSDKKTHRFNIWKHSYVKTCAAVDQELEQHRQ   96 (296)
Q Consensus        17 ~~l~~V~DG~Gg~G~~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~   96 (296)
                      ..+|+|||||||+|..+|+++.+.+...+...           +          + .+.+++    ++..+++.+.+...
T Consensus        29 ~~~~~V~DG~Gg~G~~as~~~~~~l~~~~~~~-----------~----------~-~~~l~~----~~~~~~~~l~~~~~   82 (234)
T 2jfr_A           29 GILYAVADGFGARGHHASATALKTLSAGFAAA-----------P----------D-RDGLLE----AVQQANLRVFELLG   82 (234)
T ss_dssp             TTEEEEEEEESTTHHHHHHHHHHHHHHHHHHS-----------C----------S-HHHHHH----HHHHHHHHHHHHHT
T ss_pred             CcEEEEEeCCCccHHHHHHHHHHHHHHHHhcC-----------C----------c-HHHHHH----HHHHHHHHHHHhhc
Confidence            45899999999666688888887777655421           0          0 124444    44445555544322


Q ss_pred             CCCcCCcceEEEEEEECCe---EEEEEeccCceEEEEecCCCceeEEEcCccCCCCChhhHHHHHHcCCeeEeecCCCCc
Q 022493           97 IDSFYSGTTALTIVRQGEF---IMVANVGDSRAVLATTSEDGSLVPVQLTVDFKPNLPYEAERIIQCKGRVFCLEDEPGV  173 (296)
Q Consensus        97 ~~~~~~GtT~~~~~i~~~~---l~~anvGDSr~~l~~~~~~g~~~~~~lt~dH~~~~~~E~~ri~~~gg~i~~~~~~~~~  173 (296)
                      .....+|||++++++.+++   ++++|+||||+|++|   +|  .+.+||.||++..     ++.+.| .+...+.... 
T Consensus        83 ~~~~~~gtT~~~~~i~~~~~~~l~~anvGDsr~~l~r---~g--~~~~lt~dh~~~~-----~~~~~g-~i~~~~~~~~-  150 (234)
T 2jfr_A           83 DEPTVSGTTLTAVAVFEPGQGGPLVVNIGDSPLYRIR---DG--HMEQLTDDHSVAG-----ELVRMG-EITRHEARWH-  150 (234)
T ss_dssp             TSSSCCEECEEEEECCCGGGTSCEEEEESSCCEEEEE---TT--EEEECSCCCBHHH-----HHHHTT-SSCHHHHTTC-
T ss_pred             cCCCCCCccEEEEEEECCCccEEEEEEEccCceEEEE---CC--EEEEeCCCCCHHH-----HHHHcC-CCCHHHHhcC-
Confidence            2222389999999999988   999999999999998   45  4699999999753     333443 2322111111 


Q ss_pred             eeEecCCCCCCCcccccccCcccccccCccccceeEEEEecCCCeEEEEecCCCCCCCCHHHHHHHHhcCCChHHHHHHH
Q 022493          174 HRVWLPNEECPGLAMSRAFGDYCVKDYGLISVPEVTQRHITSRDQFVVLATDGVWDVISNQEAIQIVSSTPNRAKSAKRL  253 (296)
Q Consensus       174 ~rv~~~~~~~~~l~~tRalGd~~~k~~~v~~~Pdi~~~~l~~~d~fliL~SDGl~d~l~~~ei~~i~~~~~~~~~~a~~L  253 (296)
                               .+.+.+||+||+.      ..++|++..+++.++| +||||||||||+++++++.+++ +..+++++|+.|
T Consensus       151 ---------~~~~~~tralG~~------~~~~~~~~~~~l~~gd-~lll~SDGl~d~~~~~~i~~~~-~~~~~~~~a~~l  213 (234)
T 2jfr_A          151 ---------PQRHLLTRALGIG------PHIGPDVFGIDCGPGD-RLLISSDGLFAAADEALIVDAA-TSPDPQVAVRRL  213 (234)
T ss_dssp             ---------TTTTCBSCCBSSS------SCCCCEEEECCCCTTC-EEEEECGGGGTTSCHHHHHHHH-TCSSHHHHHHHH
T ss_pred             ---------cccceeeecCcCC------CCceeEEEEEecCCCC-EEEEECCCCccccCHHHHHHHH-ccCCHHHHHHHH
Confidence                     2356899999986      4568999999999998 5899999999999999999999 777899999999


Q ss_pred             HHHHHHHHHhhcCCCCCCceEEEEEEc
Q 022493          254 VECAVHAWKRKRKGIAMDDISAICLFF  280 (296)
Q Consensus       254 ~~~a~~~~~~~~~g~~~DNiTvivv~~  280 (296)
                      ++.|+.      +| +.||+|+||+++
T Consensus       214 ~~~a~~------~g-~~DniTvivv~~  233 (234)
T 2jfr_A          214 VEVAND------AG-GSDNTTVVVIDL  233 (234)
T ss_dssp             HHHHHH------TT-CCSCEEEEEEEE
T ss_pred             HHHHHH------cC-CCCCeEEEEEEe
Confidence            999998      47 899999999987


No 17 
>1txo_A Putative bacterial enzyme; serine/threonine protein phosphatases, PSTP/PPP, structural genomics, PSI, protein structure initiative; 1.95A {Mycobacterium tuberculosis} SCOP: d.219.1.1 PDB: 2cm1_A
Probab=100.00  E-value=7.6e-36  Score=256.71  Aligned_cols=210  Identities=22%  Similarity=0.269  Sum_probs=155.8

Q ss_pred             eEEEEEeeCCCcCcHHHHHHHHHHhHHHHHHHHHHHHHhhcCCCCCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHhccC
Q 022493           17 MMFCGIFDGHGPWGHFVAKKVRESMPSSLLCNWQETLAEASLLPDIDLDSDKKTHRFNIWKHSYVKTCAAVDQELEQHRQ   96 (296)
Q Consensus        17 ~~l~~V~DG~Gg~G~~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~   96 (296)
                      ..+|+||||||  |+.+++++++.+.+.+.+.+..       .+.        ....+.+++++..+...+.+.....+.
T Consensus        28 ~~~~~V~DG~G--g~~~~~~as~~~~~~l~~~~~~-------~~~--------~~~~~~l~~a~~~~~~~i~~~~~~~~~   90 (237)
T 1txo_A           28 ARLLALADGMG--GHAAGEVASQLVIAALAHLDDD-------EPG--------GDLLAKLDAAVRAGNSAIAAQVEMEPD   90 (237)
T ss_dssp             SSEEEEEEEEC--TTTHHHHHHHHHHHHHGGGGSS-------CCC--------SCHHHHHHHHHHHHHHHHHHHHHHCGG
T ss_pred             CCEEEEEeCCC--CcHHHHHHHHHHHHHHHHHhhh-------CCc--------hhHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence            46899999999  8889999999998887643210       000        022335555555555555444433221


Q ss_pred             CCCcCCcceEEEEEEECCeEEEEEeccCceEEEEecCCCceeEEEcCccCCCCChhhHHHHHHcCCeeEeecCCCCceeE
Q 022493           97 IDSFYSGTTALTIVRQGEFIMVANVGDSRAVLATTSEDGSLVPVQLTVDFKPNLPYEAERIIQCKGRVFCLEDEPGVHRV  176 (296)
Q Consensus        97 ~~~~~~GtT~~~~~i~~~~l~~anvGDSr~~l~~~~~~g~~~~~~lt~dH~~~~~~E~~ri~~~gg~i~~~~~~~~~~rv  176 (296)
                        ...+|||++++++.+++++++|+||||+|++|   +|  .+.+||.||++..     ++...| .+........    
T Consensus        91 --~~~~gtT~~~~~i~~~~l~~a~vGDsr~~l~r---~g--~~~~lt~dh~~~~-----~~~~~G-~i~~~~~~~~----  153 (237)
T 1txo_A           91 --LEGMGTTLTAILFAGNRLGLVHIGDSRGYLLR---DG--ELTQITKDDTFVQ-----TLVDEG-RITPEEAHSH----  153 (237)
T ss_dssp             --GTTCEECEEEEEEETTEEEEEEESSCEEEEEE---TT--EEEECSCCCBHHH-----HHHHTT-SSCTTGGGGC----
T ss_pred             --CCCCcceEEEEEEECCEEEEEEEccCcEEEEe---CC--EeEEeCCCCCHHH-----HHHHcC-CCCHHHHhhC----
Confidence              23589999999999999999999999999998   45  5699999999643     344443 3332111111    


Q ss_pred             ecCCCCCCCcccccccCcccccccCccccceeEEEEecCCCeEEEEecCCCCCCCCHHHHHHHHhcCCChHHHHHHHHHH
Q 022493          177 WLPNEECPGLAMSRAFGDYCVKDYGLISVPEVTQRHITSRDQFVVLATDGVWDVISNQEAIQIVSSTPNRAKSAKRLVEC  256 (296)
Q Consensus       177 ~~~~~~~~~l~~tRalGd~~~k~~~v~~~Pdi~~~~l~~~d~fliL~SDGl~d~l~~~ei~~i~~~~~~~~~~a~~L~~~  256 (296)
                            ..+..+||++|+.       .++|++..+++.++|. ||||||||||+++++++.+++.+ .+++++|+.|++.
T Consensus       154 ------~~~~~~tr~lg~~-------~~~p~~~~~~l~~~d~-lvl~SDGl~d~l~~~~i~~~~~~-~~~~~~a~~L~~~  218 (237)
T 1txo_A          154 ------PQRSLIMRALTGH-------EVEPTLTMREARAGDR-YLLCSDGLSDPVSDETILEALQI-PEVAESAHRLIEL  218 (237)
T ss_dssp             ------TTTTCBCCCBSSS-------CCCCEEEEEECCTTCE-EEEECHHHHTTSCHHHHHHHHTS-SSHHHHHHHHHHH
T ss_pred             ------ccccceeeccCCC-------CccceEEEEecCCCCE-EEEECCCCCCCCCHHHHHHHHhc-CCHHHHHHHHHHH
Confidence                  1234689999953       4689999999999985 69999999999999999999975 4799999999999


Q ss_pred             HHHHHHhhcCCCCCCceEEEEEEccC
Q 022493          257 AVHAWKRKRKGIAMDDISAICLFFHS  282 (296)
Q Consensus       257 a~~~~~~~~~g~~~DNiTvivv~~~~  282 (296)
                      |+.      +| +.||+|+||++|.+
T Consensus       219 a~~------~g-~~DniTvivv~~~~  237 (237)
T 1txo_A          219 ALR------GG-GPDNVTVVVADLEH  237 (237)
T ss_dssp             HHH------TT-CCSCEEEEEEEEEC
T ss_pred             HHH------cC-CCCCeEEEEEEeeC
Confidence            998      47 89999999999853


No 18 
>3rnr_A Stage II sporulation E family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 2.00A {Thermanaerovibrio acidaminovorans}
Probab=100.00  E-value=6e-36  Score=253.16  Aligned_cols=203  Identities=17%  Similarity=0.180  Sum_probs=145.0

Q ss_pred             CCCCCeEEEEEeeCCCcCcHHHHHHHHHHhHHHHHHHHHHHHHhhcCCCCCCCcchhhhhhHHHHHHHHHHHHHHHHHHH
Q 022493           12 GCQADMMFCGIFDGHGPWGHFVAKKVRESMPSSLLCNWQETLAEASLLPDIDLDSDKKTHRFNIWKHSYVKTCAAVDQEL   91 (296)
Q Consensus        12 ~~~~~~~l~~V~DG~Gg~G~~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~   91 (296)
                      ...++..+|+||||||  |+.+++++++.+.+.+.+.+....                     .+++++..++..+.+..
T Consensus         5 ~~~~~~~l~~VaDG~G--G~~~g~~AS~~~~~~l~~~~~~~~---------------------~~~~~~~~an~~l~~~~   61 (211)
T 3rnr_A            5 GTGGDKAYCVVVDGMG--GMIRGDEAAQRALSASVGVLDAGG---------------------SPLDAVLAAQAAVHRWA   61 (211)
T ss_dssp             EEETTEEEEEEEEECT--TSTTHHHHHHHHHHHHHHHHHTTC---------------------CHHHHHHHHHHHHHHHH
T ss_pred             eECCCccEEEEEeCCc--CcHHHHHHHHHHHHHHHHHHhccC---------------------CHHHHHHHHHHHHHHHH
Confidence            3457889999999999  666666666666666654432210                     12456666666666655


Q ss_pred             HhccCCCCcCCcceEEEEEEE--CCeEEEEEeccCceEEEEecCCCceeEEEcCccCCCCChhhHHHHHHcCCeeEeecC
Q 022493           92 EQHRQIDSFYSGTTALTIVRQ--GEFIMVANVGDSRAVLATTSEDGSLVPVQLTVDFKPNLPYEAERIIQCKGRVFCLED  169 (296)
Q Consensus        92 ~~~~~~~~~~~GtT~~~~~i~--~~~l~~anvGDSr~~l~~~~~~g~~~~~~lt~dH~~~~~~E~~ri~~~gg~i~~~~~  169 (296)
                      ...+.  ...+|||++++++.  ++++|++|+||||+|++|   +|  .+++||.||++..     ++.+.|.  ..   
T Consensus        62 ~~~~~--~~~~GtT~~~~~i~~~~~~~~~anvGDSr~yl~r---~g--~~~~lt~dh~~~~-----~~~~~g~--~~---  124 (211)
T 3rnr_A           62 SQGGI--LGRTGATMAVAAVNLRDGTLEWASVGDCRVYLFK---GG--RLSRLSLDHNVSS-----EMVLLGR--GP---  124 (211)
T ss_dssp             HHTTC--TTSCCEEEEEEEEETTTTEEEEEEESSCEEEEEE---TT--EEEECCCCCBHHH-----HHHHTTS--CC---
T ss_pred             hhccC--CCCcchhheeeeeeeCCCEEEEEEEccCeEEEEe---CC--EEEEECCCcHHHH-----HHHHcCC--Ch---
Confidence            44332  33699999999999  999999999999999998   45  5699999999643     3444443  21   


Q ss_pred             CCCceeEecCCCCCCCcccccccCcccccccCcccccee--EEEEecCCCeEEEEecCCCCCCCCHHHHHHHHhcCCChH
Q 022493          170 EPGVHRVWLPNEECPGLAMSRAFGDYCVKDYGLISVPEV--TQRHITSRDQFVVLATDGVWDVISNQEAIQIVSSTPNRA  247 (296)
Q Consensus       170 ~~~~~rv~~~~~~~~~l~~tRalGd~~~k~~~v~~~Pdi--~~~~l~~~d~fliL~SDGl~d~l~~~ei~~i~~~~~~~~  247 (296)
                      ...+.          ...+||++|..      ...+|++  ..+++.++|. |||||||||++++++++.+++.+..+  
T Consensus       125 ~~~~~----------~~~ltralG~~------~~~~~~~~~~~~~l~~gd~-llL~SDGl~d~~~~~~i~~~l~~~~~--  185 (211)
T 3rnr_A          125 VPGPA----------GEMITSFIGIE------NLTEISTSEAPLPLEAGEG-VLVVSDGVYRSLHEDRIAMALSRGSD--  185 (211)
T ss_dssp             CCSHH----------HHCBSCCBTCS------SCCCCEECSSCEECCTTCE-EEEEEC-----CCTTEEEEEECTTSC--
T ss_pred             hhCCC----------ccEEecccCCC------CCcceeEecceecCCCCCE-EEEEcCCCCCCcCHHHHHHHHhcCCh--
Confidence            22222          24789999965      3456888  7899999995 79999999999999999999977654  


Q ss_pred             HHHHHHHHHHHHHHHhhcCCCCCCceEEEEEEc
Q 022493          248 KSAKRLVECAVHAWKRKRKGIAMDDISAICLFF  280 (296)
Q Consensus       248 ~~a~~L~~~a~~~~~~~~~g~~~DNiTvivv~~  280 (296)
                        |+.|++.|+.+     .+.+.||||+|||++
T Consensus       186 --a~~L~~~a~~~-----g~~~~DNiTvivv~L  211 (211)
T 3rnr_A          186 --ARGILQEVEAQ-----GRPYQDNATLALVIL  211 (211)
T ss_dssp             --HHHHHHHHHHS-----CTTSCSSCEEEEEEC
T ss_pred             --HHHHHHHHHHc-----CCCCCCceEEEEEeC
Confidence              89999999884     222789999999986


No 19 
>3t91_A Stage II sporulation protein E; SPOIIE, phosphatase, manganese binding, PP2C PH domain; HET: GL0 MAN; 2.64A {Bacillus subtilis} PDB: 3t9q_A*
Probab=99.83  E-value=7.2e-20  Score=157.39  Aligned_cols=190  Identities=14%  Similarity=0.105  Sum_probs=117.3

Q ss_pred             CCeEEEEEeeCCCcCcHHHHHHHHHHhHHHHHHHHHHHHHhhcCCCCCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHhc
Q 022493           15 ADMMFCGIFDGHGPWGHFVAKKVRESMPSSLLCNWQETLAEASLLPDIDLDSDKKTHRFNIWKHSYVKTCAAVDQELEQH   94 (296)
Q Consensus        15 ~~~~l~~V~DG~Gg~G~~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~   94 (296)
                      ++..+++|+||+|  +...|.+++..+...+...+...     .                .+.    ++...+++.+...
T Consensus        34 ~~~~~~~vaDg~G--~G~~aa~~s~~~~~~l~~~~~~~-----~----------------~~~----~~l~~~n~~l~~~   86 (242)
T 3t91_A           34 ARKYAAAISDGMG--NGARAHFESNETIKLLEKILESG-----I----------------DEK----IAIKTINSILSLR   86 (242)
T ss_dssp             TTEEEEEEECC-------CCSEEECHHHHHHHHHHHHT-----C----------------CHH----HHHHHHHHHHTTC
T ss_pred             CCeEEEEEEeeCC--CCHHHHHHHHHHHHHHHHHHHhC-----C----------------CHH----HHHHHHHHHHHhc
Confidence            4567899999999  55556555555555554322110     0                112    2233455555443


Q ss_pred             cCCCCcCCcceEEEEEEE--CCeEEEEEeccCceEEEEecCCCceeEEEcCccCCCCChhhHHHHHHcCCeeEeecCCCC
Q 022493           95 RQIDSFYSGTTALTIVRQ--GEFIMVANVGDSRAVLATTSEDGSLVPVQLTVDFKPNLPYEAERIIQCKGRVFCLEDEPG  172 (296)
Q Consensus        95 ~~~~~~~~GtT~~~~~i~--~~~l~~anvGDSr~~l~~~~~~g~~~~~~lt~dH~~~~~~E~~ri~~~gg~i~~~~~~~~  172 (296)
                      .   ...+++|+++++++  +++++++|+||||+|++|   +|  .+.+++.++.|                        
T Consensus        87 ~---~~~~~~T~~~~~id~~~~~l~~~~aG~~~~~l~r---~g--~~~~l~~~~~~------------------------  134 (242)
T 3t91_A           87 T---TDEIYSTLDLSIIDLQDASCKFLKVGSTPSFIKR---GD--QVMKVQASNLP------------------------  134 (242)
T ss_dssp             -------CCCCEEEEEEETTTCEEEEEEESCCCEEEEE---TT--EEEECCCC---------------------------
T ss_pred             C---CCCeEeEEEEEEEECCCCEEEEEcCCCCceEEEE---CC--EEEEecCCCce------------------------
Confidence            2   12478999999997  789999999999999998   45  34666543322                        


Q ss_pred             ceeEecCCCCCCCcccccccCcccccccCccccceeEEEEecCCCeEEEEecCCCCCCCC-----HHHHHHHHhc--CCC
Q 022493          173 VHRVWLPNEECPGLAMSRAFGDYCVKDYGLISVPEVTQRHITSRDQFVVLATDGVWDVIS-----NQEAIQIVSS--TPN  245 (296)
Q Consensus       173 ~~rv~~~~~~~~~l~~tRalGd~~~k~~~v~~~Pdi~~~~l~~~d~fliL~SDGl~d~l~-----~~ei~~i~~~--~~~  245 (296)
                                         +|-.      -...++...+.+.++|. |+|||||||+.++     ...+.+++..  ..+
T Consensus       135 -------------------lG~~------~~~~~~~~~~~l~~GD~-lll~SDGl~e~~~~~~~~~~~~~~ll~~~~~~~  188 (242)
T 3t91_A          135 -------------------IGII------NEFDVEVVSEQLKAGDL-LIMMSDGIFEGPKHVENHDLWMKRKMKGLKTND  188 (242)
T ss_dssp             ---------------------CC------CTTCEEEEEEECCTTCE-EEEECHHHHTCSTTCSCHHHHHHHHHHTCCCCC
T ss_pred             -------------------eEec------CCCcceEEEEEeCCCCE-EEEECCCcccCCCcccchHHHHHHHHHHhcCCC
Confidence                               2210      11235667888999995 8999999999998     5677777764  357


Q ss_pred             hHHHHHHHHHHHHHHHHhhcCC-CCCCceEEEEEEccCC-CCCcccCCCCC
Q 022493          246 RAKSAKRLVECAVHAWKRKRKG-IAMDDISAICLFFHSS-PLSQQVHAVAT  294 (296)
Q Consensus       246 ~~~~a~~L~~~a~~~~~~~~~g-~~~DNiTvivv~~~~~-~~~~~~~~~~~  294 (296)
                      ++++++.|++.+..+     .| ...||+|++++++... ++....+.|..
T Consensus       189 ~~~~~~~l~~~~~~~-----~~~~~~DDiTvv~i~~~~~~~~~~~~~~~~~  234 (242)
T 3t91_A          189 PQEIADLLMEEVIRT-----RSGQIEDDMTVVVVRIDHNTPKWASIPVPAI  234 (242)
T ss_dssp             HHHHHHHHHHHHHHH-----TTSCCCSCEEEEEEEEEECCCCC--------
T ss_pred             HHHHHHHHHHHHHHH-----cCCCCCCceEEEEEEEecCCCcceeecCchH
Confidence            899999999999886     32 1279999999999854 34455554443


No 20 
>3pu9_A Protein serine/threonine phosphatase; PSI-biology, MCSG, structural genomics; HET: MSE; 1.55A {Sphaerobacter thermophilus}
Probab=99.79  E-value=2.9e-17  Score=141.20  Aligned_cols=182  Identities=18%  Similarity=0.124  Sum_probs=125.1

Q ss_pred             CCeEEEEEeeCCCcCcHHHHHHHHHHhHHHHHHHHHHHHHhhcCCCCCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHhc
Q 022493           15 ADMMFCGIFDGHGPWGHFVAKKVRESMPSSLLCNWQETLAEASLLPDIDLDSDKKTHRFNIWKHSYVKTCAAVDQELEQH   94 (296)
Q Consensus        15 ~~~~l~~V~DG~Gg~G~~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~   94 (296)
                      ++..+++|+||+|  +...|.+++..+...+...+..    . .                .+.+.    ...+++.+...
T Consensus        37 ~~~~~~~vaD~~G--~G~~aa~~s~~~~~~l~~~~~~----~-~----------------~~~~~----l~~~n~~l~~~   89 (242)
T 3pu9_A           37 GGGFSAVLVDGQG--SGAGAKRLSLLVAGAAVRLLNE----G-V----------------RDGAA----ARAAHDFLYAM   89 (242)
T ss_dssp             TSEEEEEEEEESS--SHHHHHHHHHHHHHHHHHHHHT----T-C----------------CHHHH----HHHHHHHHHHH
T ss_pred             CCEEEEEEEecCC--CCHHHHHHHHHHHHHHHHHHHc----C-C----------------CHHHH----HHHHHHHHHhc
Confidence            4566799999999  7777878877776666543221    0 0                11222    23344444332


Q ss_pred             cCCCCcCCcceEEEEEEE--CCeEEEEEeccCceEEEEecCCCceeEEEcCccCCCCChhhHHHHHHcCCeeEeecCCCC
Q 022493           95 RQIDSFYSGTTALTIVRQ--GEFIMVANVGDSRAVLATTSEDGSLVPVQLTVDFKPNLPYEAERIIQCKGRVFCLEDEPG  172 (296)
Q Consensus        95 ~~~~~~~~GtT~~~~~i~--~~~l~~anvGDSr~~l~~~~~~g~~~~~~lt~dH~~~~~~E~~ri~~~gg~i~~~~~~~~  172 (296)
                      ..   ..+.+|+++++++  ++.++++|+||+++|+++   +|  .+.+++.+|.|                        
T Consensus        90 ~~---~~~~~T~~~~~id~~~~~l~~~~aG~~~~~l~r---~g--~~~~l~~~~~~------------------------  137 (242)
T 3pu9_A           90 RD---GKVSAALDILSVDLASRSVLVTRNSEVPMLLGR---NG--EFEQISESGGR------------------------  137 (242)
T ss_dssp             TT---TCCCEEEEEEEEETTTTEEEEEEESCCCEEEEE---TT--EEEEECCCCCC------------------------
T ss_pred             cC---CCcEEEEEEEEEECCCCEEEEEeCCCCcEEEEE---CC--EEEEeCCCCcc------------------------
Confidence            21   2478999999986  679999999999999998   45  45778776543                        


Q ss_pred             ceeEecCCCCCCCcccccccCcccccccCccccceeEEEEecCCCeEEEEecCCCCCCCC-------HHHHHHHHh-cCC
Q 022493          173 VHRVWLPNEECPGLAMSRAFGDYCVKDYGLISVPEVTQRHITSRDQFVVLATDGVWDVIS-------NQEAIQIVS-STP  244 (296)
Q Consensus       173 ~~rv~~~~~~~~~l~~tRalGd~~~k~~~v~~~Pdi~~~~l~~~d~fliL~SDGl~d~l~-------~~ei~~i~~-~~~  244 (296)
                                         +|-.      -...++...+++.++|. |+||||||++..+       .+++..++. ...
T Consensus       138 -------------------lG~~------~~~~~~~~~~~l~~Gd~-lll~TDGl~e~~~~~~~~~g~~~l~~l~~~~~~  191 (242)
T 3pu9_A          138 -------------------IGIY------RHTRPRVLEFPAEPGLT-VILVSDGIIGAGGRRGQPLEFLATGGRVAGPET  191 (242)
T ss_dssp             -------------------BSSC------TTCCCEEEEEECCTTCE-EEEECHHHHTTTTTTTCCCCHHHHHHHHCCTTC
T ss_pred             -------------------cccc------CCCCceEEEEEeCCCCE-EEEECcCcccCCCCccccccHHHHHHHHhccCC
Confidence                               2211      11236677888999995 8999999998764       477766554 235


Q ss_pred             ChHHHHHHHHHHHHHHHHhhcCCCCCCceEEEEEEccCCCC
Q 022493          245 NRAKSAKRLVECAVHAWKRKRKGIAMDDISAICLFFHSSPL  285 (296)
Q Consensus       245 ~~~~~a~~L~~~a~~~~~~~~~g~~~DNiTvivv~~~~~~~  285 (296)
                      +++++++.|++.+..+.    .|...||+|++++++.+...
T Consensus       192 ~~~~~~~~l~~~~~~~~----~~~~~DDiTvlvv~~~~~~~  228 (242)
T 3pu9_A          192 PAQAIADELLEAALVAD----DGRAGDDMTVVVLRLRNVEE  228 (242)
T ss_dssp             CHHHHHHHHHHHHHHHT----TTSCSSCEEEEEEEEEECCC
T ss_pred             CHHHHHHHHHHHHHHhc----CCCCCCCeEEEEEEEecCCC
Confidence            78999999999999862    12257999999999976443


No 21 
>3f79_A Probable two-component response regulator; adaptor, signaling protein; 2.80A {Pseudomonas aeruginosa} PDB: 3es2_A
Probab=99.66  E-value=2e-15  Score=130.56  Aligned_cols=182  Identities=15%  Similarity=0.028  Sum_probs=107.4

Q ss_pred             CCCeEEEEEeeCCCcCcHHHHHHHHHHhHHHHHHHHHHHHHhhcCCCCCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHh
Q 022493           14 QADMMFCGIFDGHGPWGHFVAKKVRESMPSSLLCNWQETLAEASLLPDIDLDSDKKTHRFNIWKHSYVKTCAAVDQELEQ   93 (296)
Q Consensus        14 ~~~~~l~~V~DG~Gg~G~~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~   93 (296)
                      .++..+++|+||+|  +...|.+++..+...+...+..... ...                .......++...+++.+..
T Consensus        61 ~~~~~~~~vaD~~G--hG~~aa~~s~~~~~~~~~~~~~~~~-~~~----------------~~~~~p~~~l~~ln~~l~~  121 (255)
T 3f79_A           61 DERRVAFYLADVSG--HGASSAFVTVLLKFMTTRLLYESRR-NGT----------------LPEFKPSEVLAHINRGLIN  121 (255)
T ss_dssp             TTTEEEEEEEEESS--CSHHHHHHHHHHHHHHHHHHHHHTT-CCC--------------------CHHHHHHHHHHHHBT
T ss_pred             CCCEEEEEEEEecC--CCHHHHHHHHHHHHHHHHHHHhhcc-ccc----------------cccCCHHHHHHHHHHHHHh
Confidence            34667899999999  5556666666655555432222110 000                0011123334456666654


Q ss_pred             ccCCCCcCCcceEEEEEEE--CCeEEEEEeccC-ceEEEEecCCCceeEEEcCccCCCCChhhHHHHHHcCCeeEeecCC
Q 022493           94 HRQIDSFYSGTTALTIVRQ--GEFIMVANVGDS-RAVLATTSEDGSLVPVQLTVDFKPNLPYEAERIIQCKGRVFCLEDE  170 (296)
Q Consensus        94 ~~~~~~~~~GtT~~~~~i~--~~~l~~anvGDS-r~~l~~~~~~g~~~~~~lt~dH~~~~~~E~~ri~~~gg~i~~~~~~  170 (296)
                      .    ...+++|+++++++  .+.++++|+|++ +.|+++   +|+  +.+++.+|.|                      
T Consensus       122 ~----~~~~~~T~~~~~id~~~~~l~~~~aGh~p~~~l~~---~g~--~~~l~~~~~~----------------------  170 (255)
T 3f79_A          122 T----KLGKHVTMLGGVIDLEKNSLTYSIGGHLPLPVLFV---EGQ--AGYLEGRGLP----------------------  170 (255)
T ss_dssp             T----BSSCCEEEEEEEEETTTTEEEEEECSCSCCCEEEC-----C--EEECCC--------------------------
T ss_pred             c----CCCCEEEEEEEEEECCCCEEEEEeCCCCCceEEEe---CCe--EEEeCCCCce----------------------
Confidence            2    23589999999996  679999999995 578875   453  4677665543                      


Q ss_pred             CCceeEecCCCCCCCcccccccCcccccccCccccceeEEEEecCCCeEEEEecCCCCCCCCHHH-------HHHHHhcC
Q 022493          171 PGVHRVWLPNEECPGLAMSRAFGDYCVKDYGLISVPEVTQRHITSRDQFVVLATDGVWDVISNQE-------AIQIVSST  243 (296)
Q Consensus       171 ~~~~rv~~~~~~~~~l~~tRalGd~~~k~~~v~~~Pdi~~~~l~~~d~fliL~SDGl~d~l~~~e-------i~~i~~~~  243 (296)
                                           +|-.      -...++...+++.++|. |+||||||++.++.++       +.+++.+.
T Consensus       171 ---------------------lG~~------~~~~~~~~~~~l~~gd~-lll~TDGl~e~~~~~~~~~g~~~l~~~l~~~  222 (255)
T 3f79_A          171 ---------------------VGLF------DDATYDDRVMELPPSFS-LSLFSDGILDVLPGATLKEKEASLPEQVAAA  222 (255)
T ss_dssp             ----------------------CCS------SCCCCCC---BCCSSEE-EEEECSCCCCCSCC---CCTTTSSHHHHHHH
T ss_pred             ---------------------EEEc------CCCceEEEEEEECCCCE-EEEECCCcCcccCCCcchhhHHHHHHHHHhc
Confidence                                 1200      01124556778889885 8999999999998777       78887643


Q ss_pred             -CChHHHHHHHHHHHHHHHHhhcCCCCCCceEEEEEEcc
Q 022493          244 -PNRAKSAKRLVECAVHAWKRKRKGIAMDDISAICLFFH  281 (296)
Q Consensus       244 -~~~~~~a~~L~~~a~~~~~~~~~g~~~DNiTvivv~~~  281 (296)
                       .+++++++.|. .+..      .+ ..||||+++++..
T Consensus       223 ~~~~~~~~~~l~-~~~~------~~-~~DDiTvl~v~~~  253 (255)
T 3f79_A          223 GGTLDGLRQVFG-LANL------AE-MPDDIALLVLSRN  253 (255)
T ss_dssp             SCSSHHHHHHC------------CC-SSSCEEEEEEEEC
T ss_pred             CCCHHHHHHHHH-hccC------CC-CCCCEEEEEEEec
Confidence             34677777665 2332      34 8999999999864


No 22 
>3zt9_A Serine phosphatase; hydrolase, signal transduction, protein protein interaction,; HET: PEG; 1.75A {Moorella thermoacetica}
Probab=99.63  E-value=7.4e-15  Score=121.81  Aligned_cols=163  Identities=13%  Similarity=0.078  Sum_probs=109.7

Q ss_pred             CCeEEEEEeeCCCcCcHHHHHHHHHHhHHHHHHHHHHHHHhhcCCCCCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHhc
Q 022493           15 ADMMFCGIFDGHGPWGHFVAKKVRESMPSSLLCNWQETLAEASLLPDIDLDSDKKTHRFNIWKHSYVKTCAAVDQELEQH   94 (296)
Q Consensus        15 ~~~~l~~V~DG~Gg~G~~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~   94 (296)
                      ++..+++|+||+|  ....|.+++..+...+...    .   ..                ...    +....+++.+.. 
T Consensus        29 ~~~~~~~v~Dv~G--hG~~Aa~~s~~~~~~l~~~----~---~~----------------~p~----~il~~ln~~l~~-   78 (193)
T 3zt9_A           29 EGVIFLAVGDGIG--HGPEAARAAEIAIASMESS----M---NT----------------GLV----NIFQLCHRELRG-   78 (193)
T ss_dssp             TTEEEEEEEEESS--SHHHHHHHHHHHHHHHHHH----T---TS----------------CHH----HHHHHHHHHHTT-
T ss_pred             CCEEEEEEEeCCC--CCHHHHHHHHHHHHHHHHc----c---cC----------------CHH----HHHHHHHHHHhc-
Confidence            4678899999999  5555666666666655431    0   00                111    222334554443 


Q ss_pred             cCCCCcCCcceEEEEEEE--CCeEEEEEeccCceEEEEecCCCceeEEEcCccCCCCChhhHHHHHHcCCeeEeecCCCC
Q 022493           95 RQIDSFYSGTTALTIVRQ--GEFIMVANVGDSRAVLATTSEDGSLVPVQLTVDFKPNLPYEAERIIQCKGRVFCLEDEPG  172 (296)
Q Consensus        95 ~~~~~~~~GtT~~~~~i~--~~~l~~anvGDSr~~l~~~~~~g~~~~~~lt~dH~~~~~~E~~ri~~~gg~i~~~~~~~~  172 (296)
                            ..|+|++++.++  .+++.++|+|+++.|+++.   +.  ...+...+.                         
T Consensus        79 ------~~~~t~~~~~id~~~~~l~~~~aGh~~~~l~~~---~~--~~~l~~~~g-------------------------  122 (193)
T 3zt9_A           79 ------TRGAVAALCRVDRRQGLWQAAIVGNIHVKILSA---KG--IITPLATPG-------------------------  122 (193)
T ss_dssp             ------SSCEEEEEEEEETTTTEEEEEEESSCEEEEEET---TE--EECCCCBCC-------------------------
T ss_pred             ------cCceEEEEEEEECCCCEEEEEecCCceEEEEcC---Cc--EEEecCCCC-------------------------
Confidence                  247888888887  6699999999999999983   32  232221110                         


Q ss_pred             ceeEecCCCCCCCcccccccCcccccccCccccceeEEEEecCCCeEEEEecCCCCCCCCHHHHHHHHhcCCChHHHHHH
Q 022493          173 VHRVWLPNEECPGLAMSRAFGDYCVKDYGLISVPEVTQRHITSRDQFVVLATDGVWDVISNQEAIQIVSSTPNRAKSAKR  252 (296)
Q Consensus       173 ~~rv~~~~~~~~~l~~tRalGd~~~k~~~v~~~Pdi~~~~l~~~d~fliL~SDGl~d~l~~~ei~~i~~~~~~~~~~a~~  252 (296)
                                        .+|..      ....++...+++.++|. |+|+||||++.++.+++..++  ..+++++|+.
T Consensus       123 ------------------~lG~~------~~~~~~~~~~~l~~gd~-l~l~sDGl~e~~~~~~~~~~~--~~~~~~~a~~  175 (193)
T 3zt9_A          123 ------------------ILGYN------YPHQLLIAKGSYQEGDL-FLIHSDGIQEGAVPLALLANY--RLTAEELVRL  175 (193)
T ss_dssp             ------------------BBTTB------CCSSCCCEEEECCTTCE-EEEECTTSCTTCSCGGGGGCT--TSCHHHHHHH
T ss_pred             ------------------ceecc------CCccceeEEeccCCCCE-EEEECCCCCCccChhhhhchh--cCCHHHHHHH
Confidence                              12210      01135667888999995 899999999999998877765  3479999999


Q ss_pred             HHHHHHHHHHhhcCCCCCCceEEEEEE
Q 022493          253 LVECAVHAWKRKRKGIAMDDISAICLF  279 (296)
Q Consensus       253 L~~~a~~~~~~~~~g~~~DNiTvivv~  279 (296)
                      |++.+.        + ..||+|++|++
T Consensus       176 l~~~~~--------~-~~Dd~tvlv~r  193 (193)
T 3zt9_A          176 IGEKYG--------R-RDDDVAVIVAR  193 (193)
T ss_dssp             HHHHHC--------C-TTSCEEEEEEC
T ss_pred             HHHHhC--------c-CCCCeEEEEEC
Confidence            999862        3 79999999985


No 23 
>3ke6_A Protein RV1364C/MT1410; anti-sigma factor, anti-sigma factor antagonist, phosphatase serine kinase, ATPase, unknown function; 2.60A {Mycobacterium tuberculosis}
Probab=99.24  E-value=1.8e-09  Score=99.18  Aligned_cols=129  Identities=16%  Similarity=0.150  Sum_probs=88.8

Q ss_pred             CCcceEEEEEEE--CCeEEEEEeccCceEEEEecCCCceeEEEcCccCCCCChhhHHHHHHcCCeeEeecCCCCceeEec
Q 022493          101 YSGTTALTIVRQ--GEFIMVANVGDSRAVLATTSEDGSLVPVQLTVDFKPNLPYEAERIIQCKGRVFCLEDEPGVHRVWL  178 (296)
Q Consensus       101 ~~GtT~~~~~i~--~~~l~~anvGDSr~~l~~~~~~g~~~~~~lt~dH~~~~~~E~~ri~~~gg~i~~~~~~~~~~rv~~  178 (296)
                      .+++|+++++++  .+.+.++|.|..+.|+++.  +|+  ...+..++.+                              
T Consensus       117 ~~~~t~~~~~id~~~~~l~~~~aGh~~~~l~~~--~g~--~~~l~~~~~~------------------------------  162 (399)
T 3ke6_A          117 SKSATMCVGSLDFTSGEFQYCTAGHPPPLLVTA--DAS--ARYVEPTGAG------------------------------  162 (399)
T ss_dssp             CTTCEEEEEEEETTTCEEEEEEESSCCCEEECT--TSC--EEECCCCSCC------------------------------
T ss_pred             CcEEEEEEEEEECCCCEEEEECCCCChhEEEeC--CCC--EEEeecCCCc------------------------------
Confidence            478898888886  6799999999999999973  453  3445443321                              


Q ss_pred             CCCCCCCcccccccCcccccccCccccceeEEEEecCCCeEEEEecCCCCCCCCH------HHHHHHHhcCC--------
Q 022493          179 PNEECPGLAMSRAFGDYCVKDYGLISVPEVTQRHITSRDQFVVLATDGVWDVISN------QEAIQIVSSTP--------  244 (296)
Q Consensus       179 ~~~~~~~l~~tRalGd~~~k~~~v~~~Pdi~~~~l~~~d~fliL~SDGl~d~l~~------~ei~~i~~~~~--------  244 (296)
                                  .+|        +....+...+.+.++|. |+|+||||.+....      +.+.+++.+..        
T Consensus       163 ------------plG--------~~~~~~~~~~~l~~Gd~-l~l~TDGl~e~~~~~~~~g~~~l~~~l~~~~~~~~~~~~  221 (399)
T 3ke6_A          163 ------------PLG--------SGTGFPVRSEVLNIGDA-ILFYTDGLIERPGRPLEASTAEFADLAASIASGSGGFVL  221 (399)
T ss_dssp             ------------CTT--------SSCCCCCEEEECCTTCE-EEEECTTTTSCTTCCHHHHHHHHHHHHHHHTC-------
T ss_pred             ------------ceE--------CCCCceeEEEEECCCCE-EEEECCCcccCCCCCcchhHHHHHHHHHHhhcccccccc
Confidence                        122        11224456788999995 89999999998764      45666665421        


Q ss_pred             -ChHHHHHHHHHHHHHHHHhhcCCCCCCceEEEEEEccCCCCC
Q 022493          245 -NRAKSAKRLVECAVHAWKRKRKGIAMDDISAICLFFHSSPLS  286 (296)
Q Consensus       245 -~~~~~a~~L~~~a~~~~~~~~~g~~~DNiTvivv~~~~~~~~  286 (296)
                       ++...++.|++.++..+... .+ ..||+|++++++...+..
T Consensus       222 ~~~~~~~~~l~~~~~~~~~~~-~~-~~DDitvl~vr~~~~~~~  262 (399)
T 3ke6_A          222 DAPARPIDRLCSDTLELLLRS-TG-YNDDVTLLAMQRRAPTPP  262 (399)
T ss_dssp             ---CCHHHHHHHHHHHHHHHT-TC-CSSCEEEEEEEECCCCCC
T ss_pred             cChhhHHHHHHHHHHHHhccC-CC-CCCceEEEEEEeeCCCce
Confidence             35566777777777654442 23 789999999999875433


No 24 
>3eq2_A Probable two-component response regulator; adaptor sigmas, signaling protein; 3.40A {Pseudomonas aeruginosa} PDB: 3f7a_A
Probab=98.23  E-value=1.8e-05  Score=72.09  Aligned_cols=120  Identities=16%  Similarity=0.065  Sum_probs=65.0

Q ss_pred             CCcceEEEEEEE--CCeEEEEEeccCceEEEEecCCCceeEEEcCccCCCCChhhHHHHHHcCCeeEeecCCCCceeEec
Q 022493          101 YSGTTALTIVRQ--GEFIMVANVGDSRAVLATTSEDGSLVPVQLTVDFKPNLPYEAERIIQCKGRVFCLEDEPGVHRVWL  178 (296)
Q Consensus       101 ~~GtT~~~~~i~--~~~l~~anvGDSr~~l~~~~~~g~~~~~~lt~dH~~~~~~E~~ri~~~gg~i~~~~~~~~~~rv~~  178 (296)
                      .+..|+++++++  .+.+.++|.|-...+++..  +|.  +..+.....|                              
T Consensus       264 ~~~~t~~~~~~d~~~~~l~~~~aGh~p~~~~~~--~g~--~~~l~~~~~p------------------------------  309 (394)
T 3eq2_A          264 GKHVTMLGGVIDLEKNSLTYSIGGHLPLPVLFV--EGQ--AGYLEGRGLP------------------------------  309 (394)
T ss_dssp             CCCEEEEEEEEETTTTEEEEEECSSSCCCEEEE--TTE--EEECCCC--C------------------------------
T ss_pred             CcEEEEEEEEEECCCCEEEEEcCCCCCCcEEec--CCc--eEecCCCCce------------------------------
Confidence            357888888887  6689999999866444332  453  3444322111                              


Q ss_pred             CCCCCCCcccccccCcccccccCccccceeEEEEecCCCeEEEEecCCCCCCCCH-------HHHHHHHhcCCChHHHHH
Q 022493          179 PNEECPGLAMSRAFGDYCVKDYGLISVPEVTQRHITSRDQFVVLATDGVWDVISN-------QEAIQIVSSTPNRAKSAK  251 (296)
Q Consensus       179 ~~~~~~~l~~tRalGd~~~k~~~v~~~Pdi~~~~l~~~d~fliL~SDGl~d~l~~-------~ei~~i~~~~~~~~~~a~  251 (296)
                                   +|-.      -........+.+.++|. |+|.||||.+....       +.+.+++.....   ..+
T Consensus       310 -------------lG~~------~~~~~~~~~~~l~~gd~-l~l~TDG~~e~~~~~~~~~~~~~l~~~l~~~~~---~~~  366 (394)
T 3eq2_A          310 -------------VGLF------DDATYDDRVMELPPSFS-LSLFSDGILDVLPGATLKEKEASLPEQVAAAGG---TLD  366 (394)
T ss_dssp             -------------CSCC------CCC--CCEEEECCSSCE-EEECSSCCCC-----CCSTTTTTSHHHHHTTC-----CH
T ss_pred             -------------eEec------CCCceEEEEEEeCCCCE-EEEECCCcccccCcccchhhHHHHHHHHHhcch---hHH
Confidence                         2211      01113345688899995 89999999997543       345566654322   123


Q ss_pred             HHHHHHHHHHHhhcCCCCCCceEEEEEEcc
Q 022493          252 RLVECAVHAWKRKRKGIAMDDISAICLFFH  281 (296)
Q Consensus       252 ~L~~~a~~~~~~~~~g~~~DNiTvivv~~~  281 (296)
                      .|.+....    ...+...||+|+++++.+
T Consensus       367 ~l~~~~~~----~~~~~~~DDit~l~i~~~  392 (394)
T 3eq2_A          367 GLRQVFGL----ANLAEMPDDIALLVLSRN  392 (394)
T ss_dssp             HHHHHHSC----CCSCC--CCCEEEEEC--
T ss_pred             HHHHHhcc----cCCCCCCCceEEEEEecc
Confidence            33333321    112336799999999865


Done!