BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022495
(296 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3E8X|A Chain A, Putative Nad-Dependent EpimeraseDEHYDRATASE FROM BACILLUS
HALODURANS
Length = 236
Score = 77.0 bits (188), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 63/223 (28%), Positives = 106/223 (47%), Gaps = 20/223 (8%)
Query: 60 ENVSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKA 119
EN+ + ++ V GA G + ++ +L KG A VR+ ++ ++ + IV A
Sbjct: 15 ENLYFQGXRVLVVGANGKVARYLLSELKNKGHEPVAXVRNEEQGPEL--RERGASDIVVA 72
Query: 120 DVTEGSAKLSEAIGDDSEAVVCATGFQP--GWD---LFAPWKAINLVEACRKRGVNRFIL 174
++ E + +I +AVV A G P G D L W AI ++ KRG+ RFI
Sbjct: 73 NLEEDFSHAFASI----DAVVFAAGSGPHTGADKTILIDLWGAIKTIQEAEKRGIKRFIX 128
Query: 175 ISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIRKSGINYTIIRPGGLRNEPPT 234
+SS+ G Y L+AK A+ +++S ++YTI+RPG L NE T
Sbjct: 129 VSSVGTVDPDQGPXNXRHY---------LVAKRLADDELKRSSLDYTIVRPGPLSNEEST 179
Query: 235 GNIIMETEDTLYEGTISRDQVAEVAVEALLHPESSYKVVEIIS 277
G + + + +I+R VA+V E + + K E+++
Sbjct: 180 GKVTVSPHFSEITRSITRHDVAKVIAELVDQQHTIGKTFEVLN 222
>pdb|1XQ6|A Chain A, X-ray Structure Of Gene Product From Arabidopsis Thaliana
At5g02240
pdb|1XQ6|B Chain B, X-ray Structure Of Gene Product From Arabidopsis Thaliana
At5g02240
pdb|1YBM|A Chain A, X-Ray Structure Of Selenomethionyl Gene Product From
Arabidopsis Thaliana At5g02240 In Space Group P21212
pdb|1YBM|B Chain B, X-Ray Structure Of Selenomethionyl Gene Product From
Arabidopsis Thaliana At5g02240 In Space Group P21212
pdb|2Q46|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of
Gene Product From Arabidopsis Thaliana At5g02240
pdb|2Q46|B Chain B, Ensemble Refinement Of The Protein Crystal Structure Of
Gene Product From Arabidopsis Thaliana At5g02240
pdb|2Q4B|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of
Selenomethionyl Gene Product From Arabidopsis Thaliana
At5g02240 In Space Group P21212
pdb|2Q4B|B Chain B, Ensemble Refinement Of The Protein Crystal Structure Of
Selenomethionyl Gene Product From Arabidopsis Thaliana
At5g02240 In Space Group P21212
Length = 253
Score = 58.5 bits (140), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 47/147 (31%), Positives = 75/147 (51%), Gaps = 18/147 (12%)
Query: 159 NLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGL--TLIAKLQAEQYIRKS 216
N ++A + GV +++ S MG NP + LN G L+ K +AEQY+ S
Sbjct: 115 NQIDAAKVAGVKHIVVVGS-------MGGT-NPDHP-LNKLGNGNILVWKRKAEQYLADS 165
Query: 217 GINYTIIRPGGLRN-EPPTGNIIMETEDTLYE---GTISRDQVAEVAVEALLHPESSYKV 272
G YTIIR GGL + E +++ +D L + T+ R VAEV ++ALL E+ K
Sbjct: 166 GTPYTIIRAGGLLDKEGGVRELLVGKDDELLQTDTKTVPRADVAEVCIQALLFEEAKNKA 225
Query: 273 VEIISRVDA---PKRSYEDLFGSIKQR 296
++ S+ + P + ++ LF + R
Sbjct: 226 FDLGSKPEGTSTPTKDFKALFSQVTSR 252
>pdb|3DQP|A Chain A, Crystal Structure Of The Oxidoreductase Ylbe From
Lactococcus Lactis, Northeast Structural Genomics
Consortium Target Kr121
Length = 219
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 55/185 (29%), Positives = 85/185 (45%), Gaps = 29/185 (15%)
Query: 68 KIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKA---DVTEG 124
KIF+ G+TG GK +++ L + + AG R +++ P VKA DV
Sbjct: 2 KIFIVGSTGRVGKSLLKSLSTTDYQIYAGARKVEQV--------PQYNNVKAVHFDVDWT 53
Query: 125 SAKLSEAI-GDDSEAVVCATGFQP--GWDLFAPWKAINLVEACRKRGVNRFILISSILVN 181
+ ++ + G D+ V +G + DL+ A+ L +A K V RFIL+S+I
Sbjct: 54 PEEXAKQLHGXDAIINVSGSGGKSLLKVDLYG---AVKLXQAAEKAEVKRFILLSTIFS- 109
Query: 182 GAAMGQILNPAYIF---LNVFGLTLIAKLQAEQYIRK-SGINYTIIRPGGLRNEPPTGNI 237
L P + IAK A+ Y+ K + ++YTII+PG L E TG I
Sbjct: 110 -------LQPEKWIGAGFDALKDYYIAKHFADLYLTKETNLDYTIIQPGALTEEEATGLI 162
Query: 238 IMETE 242
+ E
Sbjct: 163 DINDE 167
>pdb|3DHN|A Chain A, Crystal Structure Of The Putative Epimerase Q89z24_bactn
From Bacteroides Thetaiotaomicron. Northeast Structural
Genomics Consortium Target Btr310
Length = 227
Score = 50.8 bits (120), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 40/118 (33%), Positives = 60/118 (50%), Gaps = 13/118 (11%)
Query: 65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEG 124
K KKI + GA+G G ++ + L +GF V A VR +K K +N L++ KADV+
Sbjct: 3 KVKKIVLIGASGFVGSALLNEALNRGFEVTAVVRHPEKIKI----ENEHLKVKKADVSSL 58
Query: 125 SAKLSEAIGDDSEAVVCATGFQPGW---DLFAPWKAINL--VEACRKRGVNRFILISS 177
G D AV+ A F PGW D++ + L ++ +K GVNRF+ +
Sbjct: 59 DEVCEVCKGAD--AVISA--FNPGWNNPDIYDETIKVYLTIIDGVKKAGVNRFLXVGG 112
>pdb|2Q1W|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmh In Complex With Nad+
pdb|2Q1W|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmh In Complex With Nad+
pdb|2Q1W|C Chain C, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmh In Complex With Nad+
Length = 333
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 75/172 (43%), Gaps = 22/172 (12%)
Query: 67 KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSA 126
KK+F+ G G G I E LL +G V G+ + + KD+P+L V+ + + A
Sbjct: 22 KKVFITGICGQIGSHIAELLLERGDKV-VGIDNFATGRREHLKDHPNLTFVEGSIAD-HA 79
Query: 127 KLSEAIGD-DSEAVV-CATGFQPGWDLFAPW-----KAINLVEACRKRGVNRFILISSIL 179
+++ IGD +AVV A ++ D + N+V+A +K V RF+ + L
Sbjct: 80 LVNQLIGDLQPDAVVHTAASYKDPDDWYNDTLTNCVGGSNVVQAAKKNNVGRFVYFQTAL 139
Query: 180 VNGAA-------MGQILNPAYIFLNVFGLTLIAKLQAEQYIRKSGINYTIIR 224
G + NPA I+K E Y+ SG+++ R
Sbjct: 140 CYGVKPIQQPVRLDHPRNPAN------SSYAISKSANEDYLEYSGLDFVTFR 185
>pdb|1HDO|A Chain A, Human Biliverdin Ix Beta Reductase: Nadp Complex
pdb|1HE2|A Chain A, Human Biliverdin Ix Beta Reductase: NadpBILIVERDIN IX
Alpha Ternary Complex
pdb|1HE3|A Chain A, Human Biliverdin Ix Beta Reductase: NadpMESOBILIVERDIN IV
Alpha Ternary Complex
pdb|1HE4|A Chain A, Human Biliverdin Ix Beta Reductase: NadpFMN TERNARY
COMPLEX
pdb|1HE5|A Chain A, Human Biliverdin Ix Beta Reductase: NadpLUMICHROME TERNARY
Complex
Length = 206
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/170 (23%), Positives = 74/170 (43%), Gaps = 13/170 (7%)
Query: 67 KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNP-SLQIVKADVTEGS 125
KKI + GATG +G + Q + G+ V VRD + L + P +V DV + +
Sbjct: 4 KKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRD----SSRLPSEGPRPAHVVVGDVLQAA 59
Query: 126 AKLSEAIGDDSEAVVCATGFQPGWDLFAPWKAINLVEACRKRGVNRFILISSILVNGAAM 185
G D+ V+ T A N+V A + GV++ + +S +
Sbjct: 60 DVDKTVAGQDAVIVLLGTRNDLSPTTVMSEGARNIVAAMKAHGVDKVVACTSAFL----- 114
Query: 186 GQILNPAYIFLNVFGLTLIAKLQAEQYIRKSGINYTIIRPGGLRNEPPTG 235
+ +P + + +T ++ + +R+SG+ Y + P + ++P TG
Sbjct: 115 --LWDPTKVPPRLQAVT-DDHIRMHKVLRESGLKYVAVMPPHIGDQPLTG 161
>pdb|2RH8|A Chain A, Structure Of Apo Anthocyanidin Reductase From Vitis
Vinifera
pdb|3HFS|A Chain A, Structure Of Apo Anthocyanidin Reductase From Vitis
Vinifera
pdb|3HFS|B Chain B, Structure Of Apo Anthocyanidin Reductase From Vitis
Vinifera
Length = 338
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/125 (32%), Positives = 58/125 (46%), Gaps = 11/125 (8%)
Query: 64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLS----KDNPSLQIVKA 119
+ +K V G TG +V+ LL KG+AV VRD D K ++ L+I +A
Sbjct: 7 IGKKTACVVGGTGFVASLLVKLLLQKGYAVNTTVRDPDNQKKVSHLLELQELGDLKIFRA 66
Query: 120 DVT-EGSAKLSEAIGDDSEAVVCATGF---QPGWDLFAP--WKAINLVEAC-RKRGVNRF 172
D+T E S + A D V F P D+ P +N+++AC R + V R
Sbjct: 67 DLTDELSFEAPIAGCDFVFHVATPVHFASEDPENDMIKPAIQGVVNVMKACTRAKSVKRV 126
Query: 173 ILISS 177
IL SS
Sbjct: 127 ILTSS 131
>pdb|3QVO|A Chain A, Structure Of A Rossmann-Fold Nad(P)-Binding Family Protein
From Shigella Flexneri
Length = 236
Score = 36.2 bits (82), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 56/208 (26%), Positives = 92/208 (44%), Gaps = 26/208 (12%)
Query: 67 KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPS-LQIVKADVTEGS 125
K + + GA G + ++ QL K +K + AK + K P+ QI+ DV +
Sbjct: 24 KNVLILGAGGQIARHVINQLADKQ-TIKQTLFARQPAK--IHKPYPTNSQIIXGDVLNHA 80
Query: 126 AKLSEAIGDDSEAVVCATGFQPGWDLFAPWKAINLVEACRKRGVNRFILISSILVNGAAM 185
A G D +V A D+ +A +++ A + V R I + S+ +
Sbjct: 81 ALKQAXQGQD---IVYANLTGEDLDI----QANSVIAAXKACDVKRLIFVLSLGIYDEVP 133
Query: 186 GQIL--NPAYIFLNVFGLTLIAKLQAEQYIRKSGINYTIIRPGGLRNEPPTGNII---ME 240
G+ + N A V G L +A I SG+ YTI+RP L +E +II +
Sbjct: 134 GKFVEWNNA-----VIGEPLKPFRRAADAIEASGLEYTILRPAWLTDE----DIIDYELT 184
Query: 241 TEDTLYEGTI-SRDQVAEVAVEALLHPE 267
+ + ++GTI SR VA + + + PE
Sbjct: 185 SRNEPFKGTIVSRKSVAALITDIIDKPE 212
>pdb|2C29|D Chain D, Structure Of Dihydroflavonol Reductase From Vitis Vinifera
At 1.8 A.
pdb|2C29|F Chain F, Structure Of Dihydroflavonol Reductase From Vitis Vinifera
At 1.8 A.
pdb|2IOD|A Chain A, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2IOD|B Chain B, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2IOD|C Chain C, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2IOD|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2NNL|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2NNL|F Chain F, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|A Chain A, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|B Chain B, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|C Chain C, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|A Chain A, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|B Chain B, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|C Chain C, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|E Chain E, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|F Chain F, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
Length = 337
Score = 35.4 bits (80), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 38/74 (51%), Gaps = 8/74 (10%)
Query: 65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTT-----LSKDNPSLQIVKA 119
+ + + V GA+G G +V +LL +G+ V+A VRD K L K L + KA
Sbjct: 4 QSETVCVTGASGFIGSWLVMRLLERGYTVRATVRDPTNVKKVKHLLDLPKAETHLTLWKA 63
Query: 120 DVT-EGSAKLSEAI 132
D+ EGS EAI
Sbjct: 64 DLADEGS--FDEAI 75
>pdb|3EW7|A Chain A, Crystal Structure Of The Lmo0794 Protein From Listeria
Monocytogenes. Northeast Structural Genomics Consortium
Target Lmr162
Length = 221
Score = 34.3 bits (77), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 8/80 (10%)
Query: 68 KIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAK 127
KI + GATG +G RI+E+ +G V A VR+ K +++ + + I++ D+ +
Sbjct: 2 KIGIIGATGRAGSRILEEAKNRGHEVTAIVRNAGK----ITQTHKDINILQKDIFD---- 53
Query: 128 LSEAIGDDSEAVVCATGFQP 147
L+ + D VV A G P
Sbjct: 54 LTLSDLSDQNVVVDAYGISP 73
>pdb|3I4F|A Chain A, Structure Of Putative 3-oxoacyl-reductase From Bacillus
Thuringiensis
pdb|3I4F|B Chain B, Structure Of Putative 3-oxoacyl-reductase From Bacillus
Thuringiensis
pdb|3I4F|C Chain C, Structure Of Putative 3-oxoacyl-reductase From Bacillus
Thuringiensis
pdb|3I4F|D Chain D, Structure Of Putative 3-oxoacyl-reductase From Bacillus
Thuringiensis
Length = 264
Score = 33.1 bits (74), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
Query: 67 KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRD----LDKAKTTLSKDNPSLQIVKADVT 122
+ + T GK++ E+LLAKG++V ++ K T LQ V+ADVT
Sbjct: 8 RHALITAGTKGLGKQVTEKLLAKGYSVTVTYHSDTTAMETMKETYKDVEERLQFVQADVT 67
Query: 123 E 123
+
Sbjct: 68 K 68
>pdb|4HNG|A Chain A, The Crystal Structure Of A Short-Chain
DehydrogenasesREDUCTASE (WIDE Type) From Veillonella
Parvula Dsm 2008
pdb|4HNH|A Chain A, The Crystal Structure Of A Short-Chain
DehydrogenasesREDUCTASE (WIDE Type) From Veillonella
Parvula Dsm 2008 In Complex With Nadp
pdb|4HNH|B Chain B, The Crystal Structure Of A Short-Chain
DehydrogenasesREDUCTASE (WIDE Type) From Veillonella
Parvula Dsm 2008 In Complex With Nadp
Length = 221
Score = 32.7 bits (73), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 72/153 (47%), Gaps = 16/153 (10%)
Query: 118 KADVTEGS----AKLSEAIGDDSEAVVCATGFQPGWDLFAPWKAINLVEACRKRGVNRFI 173
+ V EGS KL +A+ + VV + G D+ ++V+A ++ + R I
Sbjct: 53 RVTVIEGSFQNPGKLEQAVTNAE--VVFVGAMESGSDM------ASIVKALSRKNIRRVI 104
Query: 174 LISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIRKSGINYTIIRPGGLRNEPP 233
+S ++G + + F N+ + + QA +R+S +NYTI+R L N+P
Sbjct: 105 GVSMAGLSGEF--PVALEKWTFDNLPISYVQGERQARNVLRESNLNYTILRLTWLYNDPE 162
Query: 234 TGNIIMETEDTLY-EGTISRDQVAEVAVEALLH 265
+ + E + + +SR+ V + A+ +LH
Sbjct: 163 KTDYELIPEGAQFNDAQVSREAVVK-AIFDILH 194
>pdb|1QYD|A Chain A, Crystal Structures Of Pinoresinol-Lariciresinol And
Phenylcoumaran Benzylic Ether Reductases, And Their
Relationship To Isoflavone Reductases
pdb|1QYD|B Chain B, Crystal Structures Of Pinoresinol-Lariciresinol And
Phenylcoumaran Benzylic Ether Reductases, And Their
Relationship To Isoflavone Reductases
pdb|1QYD|C Chain C, Crystal Structures Of Pinoresinol-Lariciresinol And
Phenylcoumaran Benzylic Ether Reductases, And Their
Relationship To Isoflavone Reductases
pdb|1QYD|D Chain D, Crystal Structures Of Pinoresinol-Lariciresinol And
Phenylcoumaran Benzylic Ether Reductases, And Their
Relationship To Isoflavone Reductases
Length = 313
Score = 32.7 bits (73), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 36/164 (21%), Positives = 68/164 (41%), Gaps = 16/164 (9%)
Query: 65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVR-----DLDKAKTTLSKDNPSLQIVKA 119
K+ ++ + G TG GKRIV ++ G R ++DK + L ++++A
Sbjct: 3 KKSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLIEA 62
Query: 120 DVTEGSAKLSEAIGDDSEAVVCATGFQPGWDLFAPWKAINLVEACRKRGVNRFILISSIL 179
+ + +L +A+ + V + G + + LVEA ++ G + L S
Sbjct: 63 SLDD-HQRLVDAL---KQVDVVISALAGGVLSHHILEQLKLVEAIKEAGNIKRFLPSEFG 118
Query: 180 VNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIRKSGINYTII 223
++ M L P +T I K + + I + I YT +
Sbjct: 119 MDPDIMEHALQPG-------SITFIDKRKVRRAIEAASIPYTYV 155
>pdb|2BKA|A Chain A, Cc3(Tip30)crystal Strucure
Length = 242
Score = 31.6 bits (70), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 12/46 (26%), Positives = 29/46 (63%)
Query: 49 MGKSEITEEAEENVSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVK 94
M ++E + E+ ++ K +F+ GA+G +G+ +++++L +G K
Sbjct: 1 MAETEALSKLREDFRMQNKSVFILGASGETGRVLLKEILEQGLFSK 46
>pdb|3H2S|A Chain A, Crystal Structure Of The Q03b84 Protein From Lactobacillus
Casei. Northeast Structural Genomics Consortium Target
Lcr19.
pdb|3H2S|B Chain B, Crystal Structure Of The Q03b84 Protein From Lactobacillus
Casei. Northeast Structural Genomics Consortium Target
Lcr19
Length = 224
Score = 31.6 bits (70), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 40/88 (45%), Gaps = 15/88 (17%)
Query: 68 KIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAK 127
KI V GATG +G IV + +G V A VRD KA L +L VK +
Sbjct: 2 KIAVLGATGRAGSAIVAEARRRGHEVLAVVRDPQKAADRLGATVATL--VKEPLV----- 54
Query: 128 LSEAIGDDSEAVVCATGFQPGWDLFAPW 155
L+EA D +AVV A L PW
Sbjct: 55 LTEADLDSVDAVVDA--------LSVPW 74
>pdb|1N7G|A Chain A, Crystal Structure Of The Gdp-mannose 4,6-dehydratase
Ternary Complex With Nadph And Gdp-rhamnose.
pdb|1N7G|B Chain B, Crystal Structure Of The Gdp-mannose 4,6-dehydratase
Ternary Complex With Nadph And Gdp-rhamnose.
pdb|1N7G|C Chain C, Crystal Structure Of The Gdp-mannose 4,6-dehydratase
Ternary Complex With Nadph And Gdp-rhamnose.
pdb|1N7G|D Chain D, Crystal Structure Of The Gdp-mannose 4,6-dehydratase
Ternary Complex With Nadph And Gdp-rhamnose.
pdb|1N7H|A Chain A, Crystal Structure Of Gdp-Mannose 4,6-Dehydratase Ternary
Complex With Nadph And Gdp
pdb|1N7H|B Chain B, Crystal Structure Of Gdp-Mannose 4,6-Dehydratase Ternary
Complex With Nadph And Gdp
Length = 381
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Query: 45 NSTKMGKSEITEEAEENVSVKQKKI-FVAGATGSSGKRIVEQLLAKGFAVKAGVR 98
N ++ IT ++ V+ +KI + G TG G + E LL KG+ V +R
Sbjct: 6 NGSRSDSESITAPKADSTVVEPRKIALITGITGQDGSYLTEFLLGKGYEVHGLIR 60
>pdb|4IPT|A Chain A, The Crystal Structure Of A Short-chain
Dehydrogenases/reductase (ethylated) From Veillonella
Parvula Dsm 2008
Length = 221
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 54/108 (50%), Gaps = 4/108 (3%)
Query: 159 NLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIRKSGI 218
++V+A ++ + R I +S ++G + + F N+ + + QA +R+S +
Sbjct: 90 SIVKALSRKNIRRVIGVSXAGLSGEF--PVALEKWTFDNLPISYVQGERQARNVLRESNL 147
Query: 219 NYTIIRPGGLRNEPPTGNIIMETEDTLY-EGTISRDQVAEVAVEALLH 265
NYTI+R L N+P + + E + + +SR+ V A+ +LH
Sbjct: 148 NYTILRLTWLYNDPEKTDYELIPEGAQFNDAQVSREAVV-XAIFDILH 194
>pdb|2GYY|A Chain A, Structure Of Aspartate Semialdehyde Dehydrogenase (Asadh)
From Streptococcus Pneumoniae
pdb|2GYY|B Chain B, Structure Of Aspartate Semialdehyde Dehydrogenase (Asadh)
From Streptococcus Pneumoniae
pdb|2GYY|C Chain C, Structure Of Aspartate Semialdehyde Dehydrogenase (Asadh)
From Streptococcus Pneumoniae
pdb|2GYY|D Chain D, Structure Of Aspartate Semialdehyde Dehydrogenase (Asadh)
From Streptococcus Pneumoniae
pdb|2GZ1|A Chain A, Structure Of Aspartate Semialdehyde Dehydrogenase (asadh)
From Streptococcus Pneumoniae Complexed With Nadp
pdb|2GZ1|B Chain B, Structure Of Aspartate Semialdehyde Dehydrogenase (asadh)
From Streptococcus Pneumoniae Complexed With Nadp
pdb|2GZ2|A Chain A, Structure Of Aspartate Semialdehyde Dehydrogenase (Asadh)
From Streptococcus Pneumoniae Complexed With 2',5'-Adp
pdb|2GZ2|B Chain B, Structure Of Aspartate Semialdehyde Dehydrogenase (Asadh)
From Streptococcus Pneumoniae Complexed With 2',5'-Adp
pdb|2GZ3|A Chain A, Structure Of Aspartate Semialdehyde Dehydrogenase (Asadh)
From Streptococcus Pneumoniae Complexed With Nadp And
Aspartate- Semialdehyde
pdb|2GZ3|B Chain B, Structure Of Aspartate Semialdehyde Dehydrogenase (Asadh)
From Streptococcus Pneumoniae Complexed With Nadp And
Aspartate- Semialdehyde
pdb|2GZ3|C Chain C, Structure Of Aspartate Semialdehyde Dehydrogenase (Asadh)
From Streptococcus Pneumoniae Complexed With Nadp And
Aspartate- Semialdehyde
pdb|2GZ3|D Chain D, Structure Of Aspartate Semialdehyde Dehydrogenase (Asadh)
From Streptococcus Pneumoniae Complexed With Nadp And
Aspartate- Semialdehyde
pdb|3PWK|A Chain A, Crystal Structure Of Aspartate Beta-Semialdehide
Dehydrogenase From Streptococcus Pneumoniae With
2',5'-Adenosine Diphosphate And D-2- Aminoadipate
pdb|3PWK|B Chain B, Crystal Structure Of Aspartate Beta-Semialdehide
Dehydrogenase From Streptococcus Pneumoniae With
2',5'-Adenosine Diphosphate And D-2- Aminoadipate
pdb|3PWS|A Chain A, Crystal Structure Of Aspartate Beta-Semialdehide
Dehydrogenase From Streptococcus Pneumoniae With
2',5'-Adenosine Diphosphate And D-2- Aminoadipate
pdb|3PWS|B Chain B, Crystal Structure Of Aspartate Beta-Semialdehide
Dehydrogenase From Streptococcus Pneumoniae With
2',5'-Adenosine Diphosphate And D-2- Aminoadipate
pdb|3PYL|A Chain A, Crystal Structure Of Aspartate Beta-Semialdehide
Dehydrogenase From Streptococcus Pneumoniae With
D-2,3-Diaminopropionate
pdb|3PYL|B Chain B, Crystal Structure Of Aspartate Beta-Semialdehide
Dehydrogenase From Streptococcus Pneumoniae With
D-2,3-Diaminopropionate
pdb|3PYL|C Chain C, Crystal Structure Of Aspartate Beta-Semialdehide
Dehydrogenase From Streptococcus Pneumoniae With
D-2,3-Diaminopropionate
pdb|3PYL|D Chain D, Crystal Structure Of Aspartate Beta-Semialdehide
Dehydrogenase From Streptococcus Pneumoniae With
D-2,3-Diaminopropionate
pdb|3PYX|A Chain A, Crystals Structure Of Aspartate Beta-Semialdehyde
Dehydrogenase Complex With Nadp And 2-Aminoterephthalate
pdb|3PYX|B Chain B, Crystals Structure Of Aspartate Beta-Semialdehyde
Dehydrogenase Complex With Nadp And 2-Aminoterephthalate
pdb|3PZB|A Chain A, Crystals Structure Of Aspartate Beta-Semialdehyde
Dehydrogenase Complex With Nadp And
D-2,3-Diaminopropionate
pdb|3PZB|B Chain B, Crystals Structure Of Aspartate Beta-Semialdehyde
Dehydrogenase Complex With Nadp And
D-2,3-Diaminopropionate
pdb|3Q11|A Chain A, Crystals Structure Of Aspartate Beta-Semialdehyde
Dehydrogenase From Streptococcus Pneumoniae With Nadp
And Aspartyl Beta- Difluorophosphonate
pdb|3Q11|B Chain B, Crystals Structure Of Aspartate Beta-Semialdehyde
Dehydrogenase From Streptococcus Pneumoniae With Nadp
And Aspartyl Beta- Difluorophosphonate
pdb|3Q1L|A Chain A, Crystals Structure Of Aspartate Beta-Semialdehyde
Dehydrogenase From Streptococcus Pneumoniae With
Cysteamine Bound Covalently To Cys 128
pdb|3Q1L|B Chain B, Crystals Structure Of Aspartate Beta-Semialdehyde
Dehydrogenase From Streptococcus Pneumoniae With
Cysteamine Bound Covalently To Cys 128
pdb|3Q1L|C Chain C, Crystals Structure Of Aspartate Beta-Semialdehyde
Dehydrogenase From Streptococcus Pneumoniae With
Cysteamine Bound Covalently To Cys 128
pdb|3Q1L|D Chain D, Crystals Structure Of Aspartate Beta-Semialdehyde
Dehydrogenase From Streptococcus Pneumoniae With
Cysteamine Bound Covalently To Cys 128
Length = 366
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 61/137 (44%), Gaps = 26/137 (18%)
Query: 53 EITEEAEENVSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNP 112
E TE A E V + +F AG++ S+ +AVKAGV +D T+ + NP
Sbjct: 56 ETTETAFEGVDIA---LFSAGSSTSAKY--------APYAVKAGVVVVDN--TSYFRQNP 102
Query: 113 SLQIVKADVTEGSAKLSEAIGDDSEAVVCATGFQPGWDLFAPWKAINLVEACRKRGVNRF 172
+ +V +V + A+ + + C P A+ V +K G++R
Sbjct: 103 DVPLVVPEVN------AHALDAHNGIIAC-----PNCSTIQMMVALEPVR--QKWGLDRI 149
Query: 173 ILISSILVNGAAMGQIL 189
I+ + V+GA MG IL
Sbjct: 150 IVSTYQAVSGAGMGAIL 166
>pdb|3R6D|A Chain A, Crystal Structure Of Nad-Dependent EpimeraseDEHYDRATASE
FROM Veillonella Parvula Dsm 2008 With Cz-Methylated
Lysine
Length = 221
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Query: 208 QAEQYIRKSGINYTIIRPGGLRNEPPTGNIIMETEDTLY-EGTISRDQVAEVAVEALLH 265
QA +R+S +NYTI+R L N+P + + E + + +SR+ V + A+ +LH
Sbjct: 137 QARNVLRESNLNYTILRLTWLYNDPEXTDYELIPEGAQFNDAQVSREAVVK-AIFDILH 194
>pdb|1UJM|A Chain A, Crystal Structure Of Aldehyde Reductase 2 From
Sporobolomyces Salmonicolor Aku4429
pdb|1UJM|B Chain B, Crystal Structure Of Aldehyde Reductase 2 From
Sporobolomyces Salmonicolor Aku4429
Length = 342
Score = 29.3 bits (64), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 17/34 (50%)
Query: 69 IFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDK 102
+ V GA G +VEQLL G+ V+ R K
Sbjct: 14 VLVTGANGFVASHVVEQLLEHGYKVRGTARSASK 47
>pdb|1Y1P|A Chain A, X-Ray Structure Of Aldehyde Reductase With Nadph
pdb|1Y1P|B Chain B, X-Ray Structure Of Aldehyde Reductase With Nadph
pdb|1ZZE|A Chain A, X-Ray Structure Of Nadph-Dependent Carbonyl Reductase From
Sporobolomyces Salmonicolor
pdb|1ZZE|B Chain B, X-Ray Structure Of Nadph-Dependent Carbonyl Reductase From
Sporobolomyces Salmonicolor
Length = 342
Score = 29.3 bits (64), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 17/34 (50%)
Query: 69 IFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDK 102
+ V GA G +VEQLL G+ V+ R K
Sbjct: 14 VLVTGANGFVASHVVEQLLEHGYKVRGTARSASK 47
>pdb|1Q87|A Chain A, Crystal Structure Of The C-Domain Of The T.Vaginalis Inr
Binding Protein, Ibp39 (Tetragonal Form)
pdb|1Q87|B Chain B, Crystal Structure Of The C-Domain Of The T.Vaginalis Inr
Binding Protein, Ibp39 (Tetragonal Form)
pdb|1Q88|A Chain A, Crystal Structure Of The C-Domain Of The T.Vaginalis Inr
Binding Protein, Ibp39 (Monoclinic Form)
pdb|1Q88|B Chain B, Crystal Structure Of The C-Domain Of The T.Vaginalis Inr
Binding Protein, Ibp39 (Monoclinic Form)
pdb|1Q89|A Chain A, Crystal Structure Of The C-Domain Of The T.Vaginalis Inr
Binding Protein, Ibp39 (Cubic Crystal Form)
Length = 221
Score = 28.9 bits (63), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 5/49 (10%)
Query: 247 EGTISRDQVAEVAVEALLHPESSYK-VVEIISRVDAPK----RSYEDLF 290
+GT+ RD + E A E PE + +E+IS + AP+ +S DL+
Sbjct: 51 DGTVMRDFLIEKAAEYFKQPEQPKQNAIEVISAIMAPQEEQTKSKADLY 99
>pdb|2FMU|A Chain A, Crystal Structure Of A Tat-Interacting Protein Homologue
(Htatip2, Aw111545, Cc3, Tip30) From Mus Musculus At
2.30 A Resolution
Length = 248
Score = 28.1 bits (61), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 9/30 (30%), Positives = 22/30 (73%)
Query: 60 ENVSVKQKKIFVAGATGSSGKRIVEQLLAK 89
E+ ++ K +F+ GA+G +GK +++++L +
Sbjct: 18 EDFKMQNKSVFILGASGETGKVLLKEILGQ 47
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.132 0.372
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,973,639
Number of Sequences: 62578
Number of extensions: 304009
Number of successful extensions: 934
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 910
Number of HSP's gapped (non-prelim): 31
length of query: 296
length of database: 14,973,337
effective HSP length: 98
effective length of query: 198
effective length of database: 8,840,693
effective search space: 1750457214
effective search space used: 1750457214
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)