BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022496
(296 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1JNS|A Chain A, Nmr Structure Of The E. Coli Peptidyl-Prolyl CisTRANS-
Isomerase Parvulin 10
pdb|1JNT|A Chain A, Nmr Structure Of The E. Coli Peptidyl-Prolyl CisTRANS-
Isomerase Parvulin 10
Length = 92
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 38/85 (44%), Positives = 54/85 (63%), Gaps = 4/85 (4%)
Query: 94 HLLVKEDDLNLLSELQRRVSQGREDLSDLAVEHSICPSKGEGGMLGWVRKGQLVPEFEEV 153
H+LVKE+ L L +L ++ G D LA +HSICPS GG LG R+GQ+VP F++V
Sbjct: 8 HILVKEEKLAL--DLLEQIKNG-ADFGKLAKKHSICPSGKRGGDLGEFRQGQMVPAFDKV 64
Query: 154 AFTTP-LNKVARCKTKFGWHLLQVL 177
F+ P L T+FG+H+++VL
Sbjct: 65 VFSCPVLEPTGPLHTQFGYHIIKVL 89
>pdb|3IWH|A Chain A, Crystal Structure Of Rhodanese-Like Domain Protein From
Staphylococcus Aureus
pdb|3MZZ|A Chain A, Crystal Structure Of Rhodanese-Like Domain Protein From
Staphylococcus Aureus
Length = 103
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 52/101 (51%), Gaps = 8/101 (7%)
Query: 186 QDIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKFD 245
+ I DEL K+ + K Q++DVR EE A +P +++P PD F+
Sbjct: 2 KSITTDELKNKLLE---SKPVQIVDVRTDEETAXGYIPNAKLIPXDTI----PDNLNSFN 54
Query: 246 PQKDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGIHAYA 286
+ Y++C G+RS +V ++L+ G V NV GG HA+
Sbjct: 55 KNEIYYIVCAGGVRSAKVVEYLEANGIDAV-NVEGGXHAWG 94
>pdb|3FOJ|A Chain A, Crystal Structure Of Ssp1007 From Staphylococcus
Saprophyticus Subsp. Saprophyticus. Northeast Structural
Genomics Target Syr101a
Length = 100
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 48/101 (47%), Gaps = 8/101 (7%)
Query: 186 QDIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKFD 245
+ I EL +K+ D N ++DVR +E A +PG + +P PD F+
Sbjct: 2 ESITVTELKEKILDAN---PVNIVDVRTDQETAXGIIPGAETIPXNSI----PDNLNYFN 54
Query: 246 PQKDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGIHAYA 286
+ Y++C G RS QV Q+L+ G V NV GG +
Sbjct: 55 DNETYYIICKAGGRSAQVVQYLEQNGVNAV-NVEGGXDEFG 94
>pdb|1YW5|A Chain A, Peptidyl-Prolyl Isomerase Ess1 From Candida Albicans
Length = 177
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 52/110 (47%), Gaps = 21/110 (19%)
Query: 87 DREILVQHLLVK--------------------EDDLNLLSELQRRVSQGREDLSDLAVEH 126
D ++ V HLL+K ++ + +L + R+ G LS+LA
Sbjct: 65 DGQVRVSHLLIKNNQSRKPKSWKSPDGISRTRDESIQILKKHLERILSGEVKLSELANTE 124
Query: 127 SICPSKGEGGMLGWVRKGQLVPEFEEVAFTTPLNKVAR-CKTKFGWHLLQ 175
S C S GG LG+ KGQ+ P FEE AF + +V+ +T G H+LQ
Sbjct: 125 SDCSSHDRGGDLGFFSKGQMQPPFEEAAFNLHVGEVSNIIETNSGVHILQ 174
>pdb|1GN0|A Chain A, Escherichia Coli Glpe Sulfurtransferase Soaked With Kcn
Length = 108
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 49/98 (50%), Gaps = 8/98 (8%)
Query: 188 IQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKFDPQ 247
I + H+K+Q+ KEA L+D+R+P+ A+ L G++ D D
Sbjct: 7 INVADAHQKLQE----KEAVLVDIRDPQSFAMGHAVQAFHLTNDTLGAFMRDN----DFD 58
Query: 248 KDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGIHAY 285
VMC+HG S AQ+L QG+ V+++ GG A+
Sbjct: 59 TPVMVMCYHGNSSKGAAQYLLQQGYDVVYSIDGGFEAW 96
>pdb|1ZK6|A Chain A, Nmr Solution Structure Of B. Subtilis Prsa Ppiase
Length = 93
Score = 47.4 bits (111), Expect = 1e-05, Method: Composition-based stats.
Identities = 30/93 (32%), Positives = 52/93 (55%), Gaps = 5/93 (5%)
Query: 89 EILVQHLLVKEDDLNLLSELQRRVSQGREDLSDLAVEHSICPSKGEGGMLGW-VRKGQLV 147
+I H+LV D E+++++ +G E DLA E+S S +GG LGW ++GQ+
Sbjct: 4 KIRASHILVA--DKKTAEEVEKKLKKG-EKFEDLAKEYSTDSSASKGGDLGWFAKEGQMD 60
Query: 148 PEFEEVAFTTPLNKVAR-CKTKFGWHLLQVLSE 179
F + AF +V+ KT++G+H+++ E
Sbjct: 61 ETFSKAAFKLKTGEVSDPVKTQYGYHIIKKTEE 93
>pdb|3ICR|A Chain A, Crystal Structure Of Oxidized Bacillus Anthracis Coadr-Rhd
pdb|3ICR|B Chain B, Crystal Structure Of Oxidized Bacillus Anthracis Coadr-Rhd
pdb|3ICS|A Chain A, Crystal Structure Of Partially Reduced Bacillus Anthracis
Coadr-Rhd
pdb|3ICS|B Chain B, Crystal Structure Of Partially Reduced Bacillus Anthracis
Coadr-Rhd
pdb|3ICT|A Chain A, Crystal Structure Of Reduced Bacillus Anthracis Coadr-Rhd
pdb|3ICT|B Chain B, Crystal Structure Of Reduced Bacillus Anthracis Coadr-Rhd
Length = 588
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 39/80 (48%), Gaps = 5/80 (6%)
Query: 208 LIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKFDPQKDTYVMCHHGMRSLQVAQWL 267
LIDVREP E+ + G +PL + ++ V KD Y+ C G R A+ L
Sbjct: 506 LIDVREPNELKQGXIKGSINIPLDELRDRLEEVPV----DKDIYITCQLGXRGYVAARXL 561
Query: 268 QTQGFRRVFNVSGGIHAYAT 287
+G+ +V NV GG Y T
Sbjct: 562 XEKGY-KVKNVDGGFKLYGT 580
>pdb|3RFW|A Chain A, The Virulence Factor Peb4 And The Periplasmic Protein
Cj1289 Are Two Structurally-Related Sura-Like Chaperones
In The Human Pathogen Campylobacter Jejuni
Length = 252
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 55/99 (55%), Gaps = 22/99 (22%)
Query: 90 ILVQHLLV--KEDDLNLLSELQRRVSQGRE---DLSDLAVEHSICP-SKGEGGMLGWVRK 143
+ +H+LV +++ ++++EL + +G+E S+LA E SI P SK +GG LGW +
Sbjct: 113 VQAKHILVATEKEAKDIINEL--KGLKGKELDAKFSELAKEKSIDPGSKNQGGELGWFDQ 170
Query: 144 GQLVPEFEEVAF--------TTPLNKVARCKTKFGWHLL 174
+V F + AF TTP+ KT FG+H++
Sbjct: 171 STMVKPFTDAAFALKNGTITTTPV------KTNFGYHVI 203
>pdb|1M5Y|A Chain A, Crystallographic Structure Of Sura, A Molecular Chaperone
That Facilitates Outer Membrane Porin Folding
pdb|1M5Y|B Chain B, Crystallographic Structure Of Sura, A Molecular Chaperone
That Facilitates Outer Membrane Porin Folding
pdb|1M5Y|C Chain C, Crystallographic Structure Of Sura, A Molecular Chaperone
That Facilitates Outer Membrane Porin Folding
pdb|1M5Y|D Chain D, Crystallographic Structure Of Sura, A Molecular Chaperone
That Facilitates Outer Membrane Porin Folding
Length = 408
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 56/129 (43%), Gaps = 13/129 (10%)
Query: 89 EILVQHLLVK-------EDDLNLLSELQRRVSQGREDLSDLAVEHSICP-SKGEGGMLGW 140
E+ +H+L+K E L ++ + G+ + A E S P S +GG LGW
Sbjct: 264 EVHARHILLKPSPIMTDEQARVKLEQIAADIKSGKTTFAAAAKEFSQDPGSANQGGDLGW 323
Query: 141 VRKGQLVPEFEEVAFTTPLNK---VARCKTKFGWHLLQVLSEREASLLQDIQPDELHKKM 197
P F + T LNK A + FGWHL+++L R Q D ++ +
Sbjct: 324 ATPDIFDPAFRDA--LTRLNKGQMSAPVHSSFGWHLIELLDTRNVDKTDAAQKDRAYRML 381
Query: 198 QDPNFHKEA 206
+ F +EA
Sbjct: 382 MNRKFSEEA 390
Score = 32.7 bits (73), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 39/88 (44%), Gaps = 5/88 (5%)
Query: 112 VSQGRE--DLSDLAVEHSICPSKGEGGMLGWVRKGQLVPEFEEVAFTTPLNK-VARCKTK 168
V Q R D LA+ HS GG +GW R +L F + T V ++
Sbjct: 183 VDQARNGADFGKLAIAHSADQQALNGGQMGWGRIQELPGIFAQALSTAKKGDIVGPIRSG 242
Query: 169 FGWHLLQVLSEREASLLQDIQPDELHKK 196
G+H+L+V R S ++I E+H +
Sbjct: 243 VGFHILKVNDLRGES--KNISVTEVHAR 268
>pdb|3UI4|A Chain A, 0.8 A Resolution Crystal Structure Of Human Parvulin 14
pdb|3UI5|A Chain A, Crystal Structure Of Human Parvulin 14
pdb|3UI6|A Chain A, 0.89 A Resolution Crystal Structure Of Human Parvulin 14
In Complex With Oxidized Dtt
Length = 101
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 54/94 (57%), Gaps = 11/94 (11%)
Query: 90 ILVQHLLVKEDDLNLLSELQRRVSQGREDLSDLAVEHSICPSKGEGGMLGWVRKGQLVPE 149
+ V+H+L E ++ +++ S R +++A ++S ++ +GG LGW+ +G +V
Sbjct: 8 VKVRHILC-EKHGKIMEAMEKLKSGMR--FNEVAAQYSEDKAR-QGGDLGWMTRGSMVGP 63
Query: 150 FEEVAFTTPLNKVAR-------CKTKFGWHLLQV 176
F+E AF P++ + + KTKFG+H++ V
Sbjct: 64 FQEAAFALPVSGMDKPVFTDPPVKTKFGYHIIMV 97
>pdb|1FJD|A Chain A, Human Parvulin-Like Peptidyl Prolyl CisTRANS ISOMERASE,
Hpar14
Length = 104
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 54/94 (57%), Gaps = 11/94 (11%)
Query: 90 ILVQHLLVKEDDLNLLSELQRRVSQGREDLSDLAVEHSICPSKGEGGMLGWVRKGQLVPE 149
+ V+H+L E ++ +++ S R +++A ++S ++ +GG LGW+ +G +V
Sbjct: 11 VKVRHILC-EKHGKIMEAMEKLKSGMR--FNEVAAQYSEDKAR-QGGDLGWMTRGSMVGP 66
Query: 150 FEEVAFTTPLNKVAR-------CKTKFGWHLLQV 176
F+E AF P++ + + KTKFG+H++ V
Sbjct: 67 FQEAAFALPVSGMDKPVFTDPPVKTKFGYHIIMV 100
>pdb|1QXN|A Chain A, Solution Structure Of The 30 Kda Polysulfide-Sulfur
Transferase Homodimer From Wolinella Succinogenes
pdb|1QXN|B Chain B, Solution Structure Of The 30 Kda Polysulfide-Sulfur
Transferase Homodimer From Wolinella Succinogenes
Length = 137
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 50/107 (46%), Gaps = 4/107 (3%)
Query: 188 IQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVK-FDP 246
+ P + +K +Q+ + + LIDVR+P+E+ P + G P + DP
Sbjct: 25 LSPKDAYKLLQE---NPDITLIDVRDPDELKAMGKPDVKNYKHMSRGKLEPLLAKSGLDP 81
Query: 247 QKDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGIHAYATKVDPSI 293
+K V C R+ + L+ GF+ ++N GG+ + + PS+
Sbjct: 82 EKPVVVFCKTAARAALAGKTLREYGFKTIYNSEGGMDKWLEEGLPSL 128
>pdb|1GMX|A Chain A, Escherichia Coli Glpe Sulfurtransferase
Length = 108
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 48/98 (48%), Gaps = 8/98 (8%)
Query: 188 IQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKFDPQ 247
I + H+K+Q+ KEA L+D+R+P+ A+ L G++ D D
Sbjct: 7 INVADAHQKLQE----KEAVLVDIRDPQSFAMGHAVQAFHLTNDTLGAFMRDN----DFD 58
Query: 248 KDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGIHAY 285
VM +HG S AQ+L QG+ V+++ GG A+
Sbjct: 59 TPVMVMXYHGNSSKGAAQYLLQQGYDVVYSIDGGFEAW 96
>pdb|1EQ3|A Chain A, Nmr Structure Of Human Parvulin Hpar14
Length = 96
Score = 42.4 bits (98), Expect = 3e-04, Method: Composition-based stats.
Identities = 27/94 (28%), Positives = 54/94 (57%), Gaps = 11/94 (11%)
Query: 90 ILVQHLLVKEDDLNLLSELQRRVSQGREDLSDLAVEHSICPSKGEGGMLGWVRKGQLVPE 149
+ V+H+L E ++ +++ S R +++A ++S ++ +GG LGW+ +G +V
Sbjct: 3 VKVRHILC-EKHGKIMEAMEKLKSGMR--FNEVAAQYSEDKAR-QGGDLGWMTRGSMVGP 58
Query: 150 FEEVAFTTPLNKVAR-------CKTKFGWHLLQV 176
F+E AF P++ + + KTKFG+H++ V
Sbjct: 59 FQEAAFALPVSGMDKPVFTDPPVKTKFGYHIIMV 92
>pdb|4G2P|A Chain A, Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
Domain Ii Of Molecular Chaperone Sura From Salmonella
Enterica Subsp. Enterica Serovar Typhimurium Str. 14028s
pdb|4G2P|B Chain B, Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
Domain Ii Of Molecular Chaperone Sura From Salmonella
Enterica Subsp. Enterica Serovar Typhimurium Str. 14028s
Length = 110
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 49/107 (45%), Gaps = 19/107 (17%)
Query: 89 EILVQHLLVKEDDLN-------LLSELQRRVSQGREDLSDLAVEHSICP-SKGEGGMLGW 140
E+ +H+L+K + L E+ + G+ + A E+S P S +GG LGW
Sbjct: 8 EVHARHILLKPSPIXNDQQARLKLEEIAADIKSGKTTFAAAAKEYSQDPGSANQGGDLGW 67
Query: 141 VRKGQLVPEFEEVAFTTPLNKV------ARCKTKFGWHLLQVLSERE 181
P+ + AF L K+ A + FGWHL+++L R+
Sbjct: 68 A-----TPDIFDPAFRDALTKLHKGQISAPVHSSFGWHLIELLDTRK 109
>pdb|2RQS|A Chain A, 3d Structure Of Pin From The Psychrophilic Archeon
Cenarcheaum Symbiosum (Cspin)
Length = 97
Score = 40.8 bits (94), Expect = 0.001, Method: Composition-based stats.
Identities = 31/91 (34%), Positives = 50/91 (54%), Gaps = 5/91 (5%)
Query: 89 EILVQHLLVKEDDLNLLSELQRRVSQGREDLSDLAVEHSI-CPSKGEGGMLGWVRKGQLV 147
+I H+LVK+ L +Q R+ G E LA E SI S G LG+ +G++V
Sbjct: 9 KIKCSHILVKKQGEAL--AVQERLKAG-EKFGKLAKELSIDGGSAKRDGSLGYFGRGKMV 65
Query: 148 PEFEEVAFTTPLNKVAR-CKTKFGWHLLQVL 177
FE+ AF + +V+ K++FG+H+++ L
Sbjct: 66 KPFEDAAFRLQVGEVSEPVKSEFGYHVIKRL 96
>pdb|3KAD|A Chain A, Structure-Guided Design Of Alpha-Amino Acid-Derived Pin1
Inhibitors
pdb|3KAF|A Chain A, Structure-Guided Design Of Alpha-Amino Acid-Derived Pin1
Inhibitors
pdb|2XP6|A Chain A, Discovery Of Cell-Active Phenyl-Imidazole Pin1 Inhibitors
By Structure-Guided Fragment Evolution
Length = 167
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 31/59 (52%)
Query: 97 VKEDDLNLLSELQRRVSQGREDLSDLAVEHSICPSKGEGGMLGWVRKGQLVPEFEEVAF 155
KE+ L L++ +++ G ED LA + S C S G LG +GQ+ FE+ +F
Sbjct: 85 TKEEALELINGYIQKIKSGEEDFESLASQFSDCSSAKARGDLGAFSRGQMAKPFEDASF 143
>pdb|1NMW|A Chain A, Solution Structure Of The Ppiase Domain Of Human Pin1
Length = 114
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 31/59 (52%)
Query: 97 VKEDDLNLLSELQRRVSQGREDLSDLAVEHSICPSKGEGGMLGWVRKGQLVPEFEEVAF 155
KE+ L L++ +++ G ED LA + S C S G LG +GQ+ FE+ +F
Sbjct: 32 TKEEALELINGYIQKIKSGEEDFESLASQFSDCSSAKARGDLGAFSRGQMQKPFEDASF 90
>pdb|3TCZ|A Chain A, Human Pin1 Bound To Cis Peptidomimetic Inhibitor
pdb|3TDB|A Chain A, Human Pin1 Bound To Trans Peptidomimetic Inhibitor
Length = 158
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 31/59 (52%)
Query: 97 VKEDDLNLLSELQRRVSQGREDLSDLAVEHSICPSKGEGGMLGWVRKGQLVPEFEEVAF 155
KE+ L L++ +++ G ED LA + S C S G LG +GQ+ FE+ +F
Sbjct: 76 TKEEALELINGYIQKIKSGEEDFESLASQFSDCSSAKARGDLGAFSRGQMQKPFEDASF 134
>pdb|2ZQU|A Chain A, Crystal Structure Of A Mutant Pin1 Peptidyl-Prolyl
Cis-Trans Isomerase
Length = 163
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 31/59 (52%)
Query: 97 VKEDDLNLLSELQRRVSQGREDLSDLAVEHSICPSKGEGGMLGWVRKGQLVPEFEEVAF 155
KE+ L L++ +++ G ED LA + S C S G LG +GQ+ FE+ +F
Sbjct: 81 TKEEALELINGYIQKIKSGEEDFESLASQFSDCSSAKARGDLGAFSRGQMQKPFEDASF 139
>pdb|2ZR6|A Chain A, Crystal Structure Of A Mutant Pin1 Peptidyl-Prolyl
Cis-Trans Isomerase
pdb|3OOB|A Chain A, Structural And Functional Insights Of Directly Targeting
Pin1 By Epigallocatechin-3-Gallate
Length = 163
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 31/59 (52%)
Query: 97 VKEDDLNLLSELQRRVSQGREDLSDLAVEHSICPSKGEGGMLGWVRKGQLVPEFEEVAF 155
KE+ L L++ +++ G ED LA + S C S G LG +GQ+ FE+ +F
Sbjct: 81 TKEEALELINGYIQKIKSGEEDFESLASQFSDCSSAKARGDLGAFSRGQMQKPFEDASF 139
>pdb|3TC5|A Chain A, Selective Targeting Of Disease-Relevant Protein Binding
Domains By O- Phosphorylated Natural Product Derivatives
Length = 166
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 31/59 (52%)
Query: 97 VKEDDLNLLSELQRRVSQGREDLSDLAVEHSICPSKGEGGMLGWVRKGQLVPEFEEVAF 155
KE+ L L++ +++ G ED LA + S C S G LG +GQ+ FE+ +F
Sbjct: 84 TKEEALELINGYIQKIKSGEEDFESLASQFSDCSSAKARGDLGAFSRGQMQKPFEDASF 142
>pdb|1ZCN|A Chain A, Human Pin1 Ng Mutant
Length = 161
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 31/59 (52%)
Query: 97 VKEDDLNLLSELQRRVSQGREDLSDLAVEHSICPSKGEGGMLGWVRKGQLVPEFEEVAF 155
KE+ L L++ +++ G ED LA + S C S G LG +GQ+ FE+ +F
Sbjct: 79 TKEEALELINGYIQKIKSGEEDFESLASQFSDCSSAKARGDLGAFSRGQMQKPFEDASF 137
>pdb|2F21|A Chain A, Human Pin1 Fip Mutant
Length = 162
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 31/59 (52%)
Query: 97 VKEDDLNLLSELQRRVSQGREDLSDLAVEHSICPSKGEGGMLGWVRKGQLVPEFEEVAF 155
KE+ L L++ +++ G ED LA + S C S G LG +GQ+ FE+ +F
Sbjct: 80 TKEEALELINGYIQKIKSGEEDFESLASQFSDCSSAKARGDLGAFSRGQMQKPFEDASF 138
>pdb|2ZR5|A Chain A, Crystal Structure Of A Mutant Pin1 Peptidyl-Prolyl
Cis-Trans Isomerase
Length = 163
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 31/59 (52%)
Query: 97 VKEDDLNLLSELQRRVSQGREDLSDLAVEHSICPSKGEGGMLGWVRKGQLVPEFEEVAF 155
KE+ L L++ +++ G ED LA + S C S G LG +GQ+ FE+ +F
Sbjct: 81 TKEEALELINGYIQKIKSGEEDFESLASQFSDCSSAKARGDLGAFSRGQMQKPFEDASF 139
>pdb|2ZR4|A Chain A, Crystal Structure Of A Mutant Pin1 Peptidyl-Prolyl
Cis-Trans Isomerase
Length = 163
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 31/59 (52%)
Query: 97 VKEDDLNLLSELQRRVSQGREDLSDLAVEHSICPSKGEGGMLGWVRKGQLVPEFEEVAF 155
KE+ L L++ +++ G ED LA + S C S G LG +GQ+ FE+ +F
Sbjct: 81 TKEEALELINGYIQKIKSGEEDFESLASQFSDCSSAKARGDLGAFSRGQMQKPFEDASF 139
>pdb|2JZV|A Chain A, Solution Structure Of S. Aureus Prsa-Ppiase
Length = 111
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 40/72 (55%), Gaps = 2/72 (2%)
Query: 107 ELQRRVSQGREDLSDLAVEHSI-CPSKGEGGMLGWVRKGQLVPEFEEVAFTTPLNKVAR- 164
E+Q+ VS+ ++A + S+ S + G LG+V KGQ +FE+ F +V+
Sbjct: 38 EIQKEVSKDPSKFGEIAKKESMDTGSAKKDGELGYVLKGQTDKDFEKALFKLKDGEVSEV 97
Query: 165 CKTKFGWHLLQV 176
K+ FG+H+++
Sbjct: 98 VKSSFGYHIIKA 109
>pdb|1PIN|A Chain A, Pin1 Peptidyl-Prolyl Cis-Trans Isomerase From Homo Sapiens
pdb|1NMV|A Chain A, Solution Structure Of Human Pin1
Length = 163
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 31/59 (52%)
Query: 97 VKEDDLNLLSELQRRVSQGREDLSDLAVEHSICPSKGEGGMLGWVRKGQLVPEFEEVAF 155
KE+ L L++ +++ G ED LA + S C S G LG +GQ+ FE+ +F
Sbjct: 81 TKEEALELINGYIQKIKSGEEDFESLASQFSDCSSAKARGDLGAFSRGQMQKPFEDASF 139
>pdb|2ZQV|A Chain A, Crystal Structure Of A Mutant Pin1 Peptidyl-Prolyl
Cis-Trans Isomerase
Length = 163
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 31/59 (52%)
Query: 97 VKEDDLNLLSELQRRVSQGREDLSDLAVEHSICPSKGEGGMLGWVRKGQLVPEFEEVAF 155
KE+ L L++ +++ G ED LA + S C S G LG +GQ+ FE+ +F
Sbjct: 81 TKEEALELINGYIQKIKSGEEDFESLASQFSDCSSAKARGDLGAFSRGQMQKPFEDASF 139
>pdb|2ITK|A Chain A, Human Pin1 Bound To D-Peptide
pdb|2Q5A|A Chain A, Human Pin1 Bound To L-Peptide
pdb|3KAB|A Chain A, Structure-Guided Design Of Alpha-Amino Acid-Derived Pin1
Inhibitors
pdb|3KAG|A Chain A, Structure-Guided Design Of Alpha-Amino Acid-Derived Pin1
Inhibitors
pdb|3KAH|A Chain A, Structure-Guided Design Of Alpha-Amino Acid-Derived Pin1
Inhibitors
pdb|3KAI|A Chain A, Structure-Guided Design Of Alpha-Amino Acid-Derived Pin1
Inhibitors
pdb|3KCE|A Chain A, Structure-Guided Design Of Alpha-Amino Acid-Derived Pin1
Inhibitors
pdb|3ODK|A Chain A, Discovery Of Cell-Active Phenyl-Imidazole Pin1 Inhibitors
By Structure-Guided Fragment Evolution
pdb|2XP3|A Chain A, Discovery Of Cell-Active Phenyl-Imidazole Pin1 Inhibitors
By Structure-Guided Fragment Evolution
pdb|2XP4|A Chain A, Discovery Of Cell-Active Phenyl-Imidazole Pin1 Inhibitors
By Structure-Guided Fragment Evolution
pdb|2XP5|A Chain A, Discovery Of Cell-Active Phenyl-Imidazole Pin1 Inhibitors
By Structure-Guided Fragment Evolution
pdb|2XP7|A Chain A, Discovery Of Cell-Active Phenyl-Imidazole Pin1 Inhibitors
By Structure-Guided Fragment Evolution
pdb|2XP8|A Chain A, Discovery Of Cell-Active Phenyl-Imidazole Pin1 Inhibitors
By Structure-Guided Fragment Evolution
pdb|2XP9|A Chain A, Discovery Of Cell-Active Phenyl-Imidazole Pin1 Inhibitors
By Structure-Guided Fragment Evolution
pdb|2XPA|A Chain A, Discovery Of Cell-Active Phenyl-Imidazole Pin1 Inhibitors
By Structure-Guided Fragment Evolution
pdb|2XPB|A Chain A, Discovery Of Cell-Active Phenyl-Imidazole Pin1 Inhibitors
By Structure-Guided Fragment Evolution
pdb|3NTP|A Chain A, Human Pin1 Complexed With Reduced Amide Inhibitor
Length = 167
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 31/59 (52%)
Query: 97 VKEDDLNLLSELQRRVSQGREDLSDLAVEHSICPSKGEGGMLGWVRKGQLVPEFEEVAF 155
KE+ L L++ +++ G ED LA + S C S G LG +GQ+ FE+ +F
Sbjct: 85 TKEEALELINGYIQKIKSGEEDFESLASQFSDCSSAKARGDLGAFSRGQMQKPFEDASF 143
>pdb|1F8A|B Chain B, Structural Basis For The Phosphoserine-Proline Recognition
By Group Iv Ww Domains
Length = 167
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 31/59 (52%)
Query: 97 VKEDDLNLLSELQRRVSQGREDLSDLAVEHSICPSKGEGGMLGWVRKGQLVPEFEEVAF 155
KE+ L L++ +++ G ED LA + S C S G LG +GQ+ FE+ +F
Sbjct: 85 TKEEALELINGYIQKIKSGEEDFESLASQFSDCSSAKARGDLGAFSRGQMQKPFEDASF 143
>pdb|2ZQT|A Chain A, Crystal Structure Of A Mutant Pin1 Peptidyl-Prolyl
Cis-Trans Isomerase
Length = 163
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 30/59 (50%)
Query: 97 VKEDDLNLLSELQRRVSQGREDLSDLAVEHSICPSKGEGGMLGWVRKGQLVPEFEEVAF 155
KE+ L L++ +++ G ED LA + S C S G LG +GQ FE+ +F
Sbjct: 81 TKEEALELINGYIQKIKSGEEDFESLASQFSDCSSAKARGDLGAFSRGQAQKPFEDASF 139
>pdb|3IK8|A Chain A, Structure-Based Design Of Novel Pin1 Inhibitors (I)
pdb|3IK8|B Chain B, Structure-Based Design Of Novel Pin1 Inhibitors (I)
pdb|3IKD|A Chain A, Structure-Based Design Of Novel Pin1 Inhibitors (I)
pdb|3IKD|B Chain B, Structure-Based Design Of Novel Pin1 Inhibitors (I)
pdb|3IKG|A Chain A, Structure-Based Design Of Novel Pin1 Inhibitors (I)
pdb|3IKG|B Chain B, Structure-Based Design Of Novel Pin1 Inhibitors (I)
pdb|3JYJ|A Chain A, Structure-Based Design Of Novel Pin1 Inhibitors (Ii)
pdb|3JYJ|B Chain B, Structure-Based Design Of Novel Pin1 Inhibitors (Ii)
pdb|3I6C|A Chain A, Structure-Based Design Of Novel Pin1 Inhibitors (Ii)
pdb|3I6C|B Chain B, Structure-Based Design Of Novel Pin1 Inhibitors (Ii)
Length = 123
Score = 37.4 bits (85), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 31/59 (52%)
Query: 97 VKEDDLNLLSELQRRVSQGREDLSDLAVEHSICPSKGEGGMLGWVRKGQLVPEFEEVAF 155
+E+ L L++ +++ G ED LA + S C S G LG +GQ+ FE+ +F
Sbjct: 41 TQEEALELINGYIQKIKSGEEDFESLASQFSDCSSAKARGDLGAFSRGQMQKPFEDASF 99
>pdb|2LJ4|A Chain A, Solution Structure Of The Tbpin1
Length = 115
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Query: 99 EDDLNLLSELQRRVSQGREDLSDLAVEHSICPSKGEGGMLGWVRKGQLVPEFEEVAFTTP 158
ED + L + +R++ G + A + S C S GG LG+ G+++ FE+
Sbjct: 35 EDAIKELQKWSQRIASGEVSFEEAASQRSDCGSYASGGDLGFFSSGEMMKPFEDAVRALK 94
Query: 159 LNKVA-RCKTKFGWHLLQVLS 178
+ ++ +T G H+++ L+
Sbjct: 95 IGDISPIVQTDSGLHIIKRLA 115
>pdb|3KAC|A Chain A, Structure-Guided Design Of Alpha-Amino Acid-Derived Pin1
Inhibitors
pdb|3KAC|B Chain B, Structure-Guided Design Of Alpha-Amino Acid-Derived Pin1
Inhibitors
Length = 123
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 31/59 (52%)
Query: 97 VKEDDLNLLSELQRRVSQGREDLSDLAVEHSICPSKGEGGMLGWVRKGQLVPEFEEVAF 155
+E+ L L++ +++ G ED LA + S C S G LG +GQ+ FE+ +F
Sbjct: 41 TQEEALELINGYIQKIKSGEEDFESLASQFSDCSSAKARGDLGAFSRGQMQKPFEDASF 99
>pdb|3GK5|A Chain A, Crystal Structure Of Rhodanese-Related Protein
(Tvg0868615) From Thermoplasma Volcanium, Northeast
Structural Genomics Consortium Target Tvr109a
Length = 108
Score = 36.6 bits (83), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 49/112 (43%), Gaps = 13/112 (11%)
Query: 183 SLLQDIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQF-GSWGPDIT 241
S + I +L++ + K ++DVREP E+ S+ +P+ + W
Sbjct: 1 SYYRSINAADLYENI------KAYTVLDVREPFELIFGSIANSINIPISELREKWKI--- 51
Query: 242 VKFDPQKDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGIHAYATKVDPSI 293
+ K V+C HG RS ++L G + +V GGI ++ + P +
Sbjct: 52 --LERDKKYAVICAHGNRSAAAVEFLSQLGL-NIVDVEGGIQSWIEEGYPVV 100
>pdb|1TQ1|A Chain A, Solution Structure Of At5g66040, A Putative Protein From
Arabidosis Thaliana
Length = 129
Score = 36.2 bits (82), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 39/94 (41%), Gaps = 8/94 (8%)
Query: 207 QLIDVREPEEVALSSLPGFQVLPLRQFGSWG--------PDITVKFDPQKDTYVMCHHGM 258
+ +DVR PEE + G +P G+ G ++ F + V C G
Sbjct: 34 RYLDVRTPEEFSQGHACGAINVPYMNRGASGMSKNTDFLEQVSSHFGQSDNIIVGCQSGG 93
Query: 259 RSLQVAQWLQTQGFRRVFNVSGGIHAYATKVDPS 292
RS++ L GF V ++ GG A+A P+
Sbjct: 94 RSIKATTDLLHAGFTGVKDIVGGYSAWAKNGLPT 127
>pdb|2PV3|A Chain A, Crystallographic Structure Of Sura Fragment Lacking The
Second Peptidyl-prolyl Isomerase Domain Complexed With
Peptide Nftlkfwdifrk
pdb|2PV3|B Chain B, Crystallographic Structure Of Sura Fragment Lacking The
Second Peptidyl-prolyl Isomerase Domain Complexed With
Peptide Nftlkfwdifrk
Length = 299
Score = 36.2 bits (82), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 44/99 (44%), Gaps = 4/99 (4%)
Query: 112 VSQGRE--DLSDLAVEHSICPSKGEGGMLGWVRKGQLVPEFEEVAFTTPLNK-VARCKTK 168
V Q R D LA+ HS GG +GW R +L F + T V ++
Sbjct: 183 VDQARNGADFGKLAIAHSADQQALNGGQMGWGRIQELPGIFAQALSTAKKGDIVGPIRSG 242
Query: 169 FGWHLLQVLSER-EASLLQDIQPDELHKKMQDPNFHKEA 206
G+H+L+V R E+ + Q D ++ + + F +EA
Sbjct: 243 VGFHILKVNDLRGESKNISAAQKDRAYRMLMNRKFSEEA 281
>pdb|3TP9|A Chain A, Crystal Structure Of Alicyclobacillus Acidocaldarius
Protein With Beta-Lactamase And Rhodanese Domains
pdb|3TP9|B Chain B, Crystal Structure Of Alicyclobacillus Acidocaldarius
Protein With Beta-Lactamase And Rhodanese Domains
Length = 474
Score = 35.4 bits (80), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 44/106 (41%), Gaps = 10/106 (9%)
Query: 187 DIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKFDP 246
++ PDE+ + L+DVR +E A LP +PL + + D+ P
Sbjct: 375 NVSPDEVRGALAQQGL----WLLDVRNVDEWAGGHLPQAHHIPLSKLAAHIHDV-----P 425
Query: 247 QKDTY-VMCHHGMRSLQVAQWLQTQGFRRVFNVSGGIHAYATKVDP 291
+ + V C G RS A L+ G V N GG A+ K P
Sbjct: 426 RDGSVCVYCRTGGRSAIAASLLRAHGVGDVRNXVGGYEAWRGKGFP 471
>pdb|1J6Y|A Chain A, Solution Structure Of Pin1at From Arabidopsis Thaliana
Length = 139
Score = 35.4 bits (80), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 19/80 (23%), Positives = 37/80 (46%), Gaps = 1/80 (1%)
Query: 97 VKEDDLNLLSELQRRVSQGREDLSDLAVEHSICPSKGEGGMLGWVRKGQLVPEFEEVAFT 156
+E + L ++ + G+ + ++A S C S GG LG +GQ+ FEE +
Sbjct: 57 TREAAVEQLKSIREDIVSGKANFEEVATRVSDCSSAKRGGDLGSFGRGQMQKPFEEATYA 116
Query: 157 TPLNKVAR-CKTKFGWHLLQ 175
+ ++ T G H+++
Sbjct: 117 LKVGDISDIVDTDSGVHIIK 136
>pdb|4F67|A Chain A, Three Dimensional Structure Of The Double Mutant Of
Upf0176 Protein Lpg2838 From Legionella Pneumophila At
The Resolution 1.8a, Northeast Structural Genomics
Consortium (Nesg) Target Lgr82
Length = 265
Score = 35.4 bits (80), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 24/104 (23%), Positives = 42/104 (40%), Gaps = 6/104 (5%)
Query: 188 IQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKFDPQ 247
+ P+E H+ +QDPN L+D R E L + + F + + +
Sbjct: 124 LSPEEWHQFIQDPN----VILLDTRNDYEYELGTFKNAINPDIENFREFPDYVQRNLIDK 179
Query: 248 KDTYV--MCHHGMRSLQVAQWLQTQGFRRVFNVSGGIHAYATKV 289
KD + C G+R + + + GF V+ + GI Y +
Sbjct: 180 KDKKIAXFCTGGIRCEKTTAYXKELGFEHVYQLHDGILNYLESI 223
>pdb|2ZQS|A Chain A, Crystal Structure Of A Mutant Pin1 Peptidyl-Prolyl
Cis-Trans Isomerase
Length = 163
Score = 35.0 bits (79), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 30/59 (50%)
Query: 97 VKEDDLNLLSELQRRVSQGREDLSDLAVEHSICPSKGEGGMLGWVRKGQLVPEFEEVAF 155
KE+ L L++ +++ G ED LA + S S G LG +GQ+ FE+ +F
Sbjct: 81 TKEEALELINGYIQKIKSGEEDFESLASQFSDASSAKARGDLGAFSRGQMQKPFEDASF 139
>pdb|3I2V|A Chain A, Crystal Structure Of Human Mocs3 Rhodanese-Like Domain
Length = 127
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 50/123 (40%), Gaps = 23/123 (18%)
Query: 194 HKKMQDPN-FHKEAQLIDVREPEEVALSSLPGFQVLPLRQF-------------GSWGPD 239
+K++ D FH L+DVR EV + LP +PL+ W
Sbjct: 8 YKRLLDSGAFH---LLLDVRPQVEVDICRLPHALHIPLKHLERRDAESLKLLKEAIWEEK 64
Query: 240 ITVKFDPQKDTYVMCHHGMRSLQVAQWLQTQGFRR------VFNVSGGIHAYATKVDPSI 293
+ YV+C G S + + LQ+ + V +V GG+ A+A K+D +
Sbjct: 65 QGTQEGAAVPIYVICKLGNDSQKAVKILQSLSAAQELDPLTVRDVVGGLXAWAAKIDGTF 124
Query: 294 PTY 296
P Y
Sbjct: 125 PQY 127
>pdb|3NTA|A Chain A, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent
Persulfide Reductase
pdb|3NTA|B Chain B, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent
Persulfide Reductase
Length = 574
Score = 32.3 bits (72), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 37/88 (42%), Gaps = 5/88 (5%)
Query: 198 QDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKFDPQKDTYVMCHHG 257
Q N ++ L+DVR P E+ L G +P+ + D + K+ + C G
Sbjct: 479 QIDNLSEDQLLLDVRNPGELQNGGLEGAVNIPVDEL----RDRXHELPKDKEIIIFCQVG 534
Query: 258 MRSLQVAQWLQTQGFRRVFNVSGGIHAY 285
+R + L G+ R N+ GG Y
Sbjct: 535 LRGNVAYRQLVNNGY-RARNLIGGYRTY 561
>pdb|2PV1|A Chain A, Crystallographic Structure Of Sura First Peptidyl-Prolyl
Isomerase Domain Complexed With Peptide Weyipnv
pdb|2PV2|A Chain A, Crystallographic Structure Of Sura First Peptidyl-Prolyl
Isomerase Domain Complexed With Peptide Nftlkfwdifrk
pdb|2PV2|B Chain B, Crystallographic Structure Of Sura First Peptidyl-Prolyl
Isomerase Domain Complexed With Peptide Nftlkfwdifrk
pdb|2PV2|C Chain C, Crystallographic Structure Of Sura First Peptidyl-Prolyl
Isomerase Domain Complexed With Peptide Nftlkfwdifrk
pdb|2PV2|D Chain D, Crystallographic Structure Of Sura First Peptidyl-Prolyl
Isomerase Domain Complexed With Peptide Nftlkfwdifrk
Length = 103
Score = 31.2 bits (69), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 44/99 (44%), Gaps = 12/99 (12%)
Query: 89 EILVQHLLV------KEDDLNLLSELQRR--VSQGRE--DLSDLAVEHSICPSKGEGGML 138
E+ + H+L+ D +N +E Q R V Q R D LA+ HS GG +
Sbjct: 2 ELNLSHILIPLPENPTSDQVNE-AESQARAIVDQARNGADFGKLAIAHSADQQALNGGQM 60
Query: 139 GWVRKGQLVPEFEEVAFTTPLNK-VARCKTKFGWHLLQV 176
GW R +L F + T V ++ G+H+L+V
Sbjct: 61 GWGRIQELPGIFAQALSTAKKGDIVGPIRSGVGFHILKV 99
>pdb|3HB7|A Chain A, The Crystal Structure Of An Isochorismatase-Like Hydrolase
From Alkaliphilus Metalliredigens To 2.3a
pdb|3HB7|C Chain C, The Crystal Structure Of An Isochorismatase-Like Hydrolase
From Alkaliphilus Metalliredigens To 2.3a
pdb|3HB7|B Chain B, The Crystal Structure Of An Isochorismatase-Like Hydrolase
From Alkaliphilus Metalliredigens To 2.3a
pdb|3HB7|D Chain D, The Crystal Structure Of An Isochorismatase-Like Hydrolase
From Alkaliphilus Metalliredigens To 2.3a
pdb|3HB7|E Chain E, The Crystal Structure Of An Isochorismatase-Like Hydrolase
From Alkaliphilus Metalliredigens To 2.3a
pdb|3HB7|F Chain F, The Crystal Structure Of An Isochorismatase-Like Hydrolase
From Alkaliphilus Metalliredigens To 2.3a
pdb|3HB7|G Chain G, The Crystal Structure Of An Isochorismatase-Like Hydrolase
From Alkaliphilus Metalliredigens To 2.3a
pdb|3HB7|H Chain H, The Crystal Structure Of An Isochorismatase-Like Hydrolase
From Alkaliphilus Metalliredigens To 2.3a
Length = 204
Score = 30.8 bits (68), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 39/88 (44%), Gaps = 12/88 (13%)
Query: 200 PNFHKEAQLIDVREPEEVALSSL--------PGFQVLPLRQF-GSWGPDITVKFDPQKDT 250
P+ K + + RE +++ L + F+V PL G+WG D + PQ+D
Sbjct: 36 PDLQKIFEWVRGREGDDIHLVHIQEAHRKNDADFRVRPLHAVKGTWGSDFIPELYPQEDE 95
Query: 251 YVMC---HHGMRSLQVAQWLQTQGFRRV 275
Y++ H G + +L+ +G V
Sbjct: 96 YIVQKRRHSGFAHTDLDLYLKEEGIDTV 123
>pdb|2EG4|A Chain A, Crystal Structure Of Probable Thiosulfate
Sulfurtransferase
Length = 230
Score = 30.8 bits (68), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 43/100 (43%), Gaps = 16/100 (16%)
Query: 208 LIDVREPEEVAL----------SSLPGFQVLPLRQFGSWGPDITVK---FDPQKDTYVMC 254
L+DVR PEE +PG + PL F S P+ ++ P ++ V C
Sbjct: 134 LLDVRSPEEFQGKVHPPCCPRGGRIPGSKNAPLELFLS--PEGLLERLGLQPGQEVGVYC 191
Query: 255 HHGMRSLQVAQWLQTQGFRRVFNVSGGIHAYATKVDPSIP 294
H G RS L++ G R N G +H + + P+ P
Sbjct: 192 HSGARSAVAFFVLRSLGV-RARNYLGSMHEWLQEGLPTEP 230
>pdb|2HHG|A Chain A, Structure Of Protein Of Unknown Function Rpa3614, Possible
Tyrosine Phosphatase, From Rhodopseudomonas Palustris
Cga009
Length = 139
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 33/83 (39%), Gaps = 5/83 (6%)
Query: 208 LIDVREPEEVALSS-LPGFQVLPLRQFGSW----GPDITVKFDPQKDTYVMCHHGMRSLQ 262
++D+R+P E+ +PG W P F K C G+RS
Sbjct: 42 IVDIRDPREIERDGKIPGSFSCTRGXLEFWIDPQSPYAKPIFQEDKKFVFYCAGGLRSAL 101
Query: 263 VAQWLQTQGFRRVFNVSGGIHAY 285
A+ Q G + V ++ GG A+
Sbjct: 102 AAKTAQDXGLKPVAHIEGGFGAW 124
>pdb|1JFU|A Chain A, Crystal Structure Of The Soluble Domain Of Tlpa From
Bradyrhizobium Japonicum
pdb|1JFU|B Chain B, Crystal Structure Of The Soluble Domain Of Tlpa From
Bradyrhizobium Japonicum
Length = 186
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 191 DELHKKMQDPNFHKEAQLIDVREPEE 216
DEL K+ PNF A ID R+PE+
Sbjct: 83 DELQGKLSGPNFEVVAINIDTRDPEK 108
>pdb|2JTQ|A Chain A, Rhodanese From E.Coli
pdb|2JTR|A Chain A, Rhodanese Persulfide From E. Coli
pdb|2JTS|A Chain A, Rhodanese With Anions From E. Coli
Length = 85
Score = 28.9 bits (63), Expect = 3.2, Method: Composition-based stats.
Identities = 22/73 (30%), Positives = 32/73 (43%), Gaps = 4/73 (5%)
Query: 209 IDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKFDPQKDTY-VMCHHGMRSLQVAQWL 267
IDVR PE+ + G +PL++ I + DT V C+ G +S Q + L
Sbjct: 5 IDVRVPEQYQQEHVQGAINIPLKEVKE---RIATAVPDKNDTVKVYCNAGRQSGQAKEIL 61
Query: 268 QTQGFRRVFNVSG 280
G+ V N G
Sbjct: 62 SEMGYTHVENAGG 74
>pdb|3NT6|A Chain A, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent
Persulfide Reductase C43sC531S DOUBLE MUTANT
pdb|3NT6|B Chain B, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent
Persulfide Reductase C43sC531S DOUBLE MUTANT
Length = 574
Score = 28.1 bits (61), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 36/88 (40%), Gaps = 5/88 (5%)
Query: 198 QDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKFDPQKDTYVMCHHG 257
Q N ++ L+DVR P E+ L G +P+ + D + K+ + G
Sbjct: 479 QIDNLSEDQLLLDVRNPGELQNGGLEGAVNIPVDEL----RDRXHELPKDKEIIIFSQVG 534
Query: 258 MRSLQVAQWLQTQGFRRVFNVSGGIHAY 285
+R + L G+ R N+ GG Y
Sbjct: 535 LRGNVAYRQLVNNGY-RARNLIGGYRTY 561
>pdb|3NTD|A Chain A, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent
Persulfide Reductase C531s Mutant
pdb|3NTD|B Chain B, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent
Persulfide Reductase C531s Mutant
Length = 565
Score = 28.1 bits (61), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 36/88 (40%), Gaps = 5/88 (5%)
Query: 198 QDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKFDPQKDTYVMCHHG 257
Q N ++ L+DVR P E+ L G +P+ + D + K+ + G
Sbjct: 479 QIDNLSEDQLLLDVRNPGELQNGGLEGAVNIPVDEL----RDRMHELPKDKEIIIFSQVG 534
Query: 258 MRSLQVAQWLQTQGFRRVFNVSGGIHAY 285
+R + L G+ R N+ GG Y
Sbjct: 535 LRGNVAYRQLVNNGY-RARNLIGGYRTY 561
>pdb|3OYX|A Chain A, Haloferax Volcanii Malate Synthase MagnesiumGLYOXYLATE
COMPLEX
pdb|3OYZ|A Chain A, Haloferax Volcanii Malate Synthase PyruvateACETYL-Coa
Ternary Complex
pdb|3PUG|A Chain A, Haloferax Volcanii Malate Synthase Native At 3mm
Glyoxylate
Length = 433
Score = 27.7 bits (60), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 14/66 (21%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Query: 172 HLLQVLSEREASLLQDIQPDEL-HKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPL 230
++++V+SE+ A +I P + H+ + + ++D+ +PE A+ + GF + +
Sbjct: 65 NIVEVISEQGAEFPGEIHPRMVWHRDSPETRYQGFQHMLDITDPERGAVEHIHGFVIPEV 124
Query: 231 RQFGSW 236
W
Sbjct: 125 GGIDDW 130
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,391,046
Number of Sequences: 62578
Number of extensions: 273773
Number of successful extensions: 633
Number of sequences better than 100.0: 54
Number of HSP's better than 100.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 586
Number of HSP's gapped (non-prelim): 55
length of query: 296
length of database: 14,973,337
effective HSP length: 98
effective length of query: 198
effective length of database: 8,840,693
effective search space: 1750457214
effective search space used: 1750457214
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)