BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022496
(296 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q93WI0|STR12_ARATH Rhodanese-like/PpiC domain-containing protein 12 OS=Arabidopsis
thaliana GN=At5g19370 PE=2 SV=1
Length = 299
Score = 298 bits (764), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 138/209 (66%), Positives = 172/209 (82%), Gaps = 3/209 (1%)
Query: 88 REILVQHLLVKEDDLNLLSELQRRVSQGREDLSDLAVEHSICPSKGEGGMLGWVRKGQLV 147
REILVQHLLVK +D+ L +ELQ++ G E++SDLA E+SICPSK +GG+LGWV+ GQ+V
Sbjct: 94 REILVQHLLVKNNDVELFAELQKKFLDG-EEMSDLAAEYSICPSKKDGGILGWVKLGQMV 152
Query: 148 PEFEEVAFTTPLNKVARCKTKFGWHLLQVLSEREASLLQDIQPDELHKKMQDPNFHKEAQ 207
PEFEE AF LN+V RC+T+FG HLLQVLSERE ++DIQ +ELH KMQDP F EAQ
Sbjct: 153 PEFEEAAFKAELNQVVRCRTQFGLHLLQVLSEREP--VKDIQVEELHSKMQDPVFMDEAQ 210
Query: 208 LIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKFDPQKDTYVMCHHGMRSLQVAQWL 267
LIDVREP E+ ++SLPGF+V PLRQFG+W PDIT K +P+KDT+V+C G RS+QVA WL
Sbjct: 211 LIDVREPNEIEIASLPGFKVFPLRQFGTWAPDITSKLNPEKDTFVLCKVGGRSMQVANWL 270
Query: 268 QTQGFRRVFNVSGGIHAYATKVDPSIPTY 296
Q+QGF+ V+N++GGI AY+ KVDPSIPTY
Sbjct: 271 QSQGFKSVYNITGGIQAYSLKVDPSIPTY 299
>sp|Q0VMV4|SURA_ALCBS Chaperone SurA OS=Alcanivorax borkumensis (strain SK2 / ATCC 700651
/ DSM 11573) GN=surA PE=3 SV=1
Length = 435
Score = 72.8 bits (177), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 44/134 (32%), Positives = 74/134 (55%), Gaps = 12/134 (8%)
Query: 84 GGGDREIL---VQHLLVKEDDLNLLSELQRR-------VSQGREDLSDLAVEHSICP-SK 132
GG ++ + V+H+L+K D L + Q+R V+ G+ + A E S P S
Sbjct: 284 GGAEKVVTQYHVRHVLIKADALTSAEQAQQRAIRLHDEVAAGKRQFKETAAEFSDDPGSA 343
Query: 133 GEGGMLGWVRKGQLVPEFEEVAFTTPLNKVARC-KTKFGWHLLQVLSEREASLLQDIQPD 191
GG LGWV KG++VPEFE+V TP+ +++ +++FGWH L+V R+A + + +
Sbjct: 344 RNGGELGWVNKGEMVPEFEQVMLNTPVGELSPVFESQFGWHFLRVDDIRDADMSTEFRRM 403
Query: 192 ELHKKMQDPNFHKE 205
+ + +Q F +E
Sbjct: 404 QATQALQKRRFEEE 417
>sp|P0A265|PPIC_SALTY Peptidyl-prolyl cis-trans isomerase C OS=Salmonella typhimurium
(strain LT2 / SGSC1412 / ATCC 700720) GN=ppiC PE=3 SV=2
Length = 93
Score = 70.9 bits (172), Expect = 1e-11, Method: Composition-based stats.
Identities = 38/88 (43%), Positives = 56/88 (63%), Gaps = 4/88 (4%)
Query: 94 HLLVKEDDLNLLSELQRRVSQGREDLSDLAVEHSICPSKGEGGMLGWVRKGQLVPEFEEV 153
H+LVKE+ L L +L ++ G D LA +HSICPS +GG LG R+GQ+VP F++V
Sbjct: 9 HILVKEEKLAL--DLLEQIKNG-GDFEKLAKKHSICPSGKKGGHLGEFRQGQMVPAFDKV 65
Query: 154 AFTTP-LNKVARCKTKFGWHLLQVLSER 180
F+ P L T+FG+H+++VL +
Sbjct: 66 VFSCPVLEPTGPLHTQFGYHIIKVLYRK 93
>sp|P0A266|PPIC_SALTI Peptidyl-prolyl cis-trans isomerase C OS=Salmonella typhi GN=ppiC
PE=3 SV=2
Length = 93
Score = 70.9 bits (172), Expect = 1e-11, Method: Composition-based stats.
Identities = 38/88 (43%), Positives = 56/88 (63%), Gaps = 4/88 (4%)
Query: 94 HLLVKEDDLNLLSELQRRVSQGREDLSDLAVEHSICPSKGEGGMLGWVRKGQLVPEFEEV 153
H+LVKE+ L L +L ++ G D LA +HSICPS +GG LG R+GQ+VP F++V
Sbjct: 9 HILVKEEKLAL--DLLEQIKNG-GDFEKLAKKHSICPSGKKGGHLGEFRQGQMVPAFDKV 65
Query: 154 AFTTP-LNKVARCKTKFGWHLLQVLSER 180
F+ P L T+FG+H+++VL +
Sbjct: 66 VFSCPVLEPTGPLHTQFGYHIIKVLYRK 93
>sp|P0A9L5|PPIC_ECOLI Peptidyl-prolyl cis-trans isomerase C OS=Escherichia coli (strain
K12) GN=ppiC PE=1 SV=2
Length = 93
Score = 70.9 bits (172), Expect = 1e-11, Method: Composition-based stats.
Identities = 38/85 (44%), Positives = 54/85 (63%), Gaps = 4/85 (4%)
Query: 94 HLLVKEDDLNLLSELQRRVSQGREDLSDLAVEHSICPSKGEGGMLGWVRKGQLVPEFEEV 153
H+LVKE+ L L +L ++ G D LA +HSICPS GG LG R+GQ+VP F++V
Sbjct: 9 HILVKEEKLAL--DLLEQIKNG-ADFGKLAKKHSICPSGKRGGDLGEFRQGQMVPAFDKV 65
Query: 154 AFTTP-LNKVARCKTKFGWHLLQVL 177
F+ P L T+FG+H+++VL
Sbjct: 66 VFSCPVLEPTGPLHTQFGYHIIKVL 90
>sp|P0A9L6|PPIC_ECOL6 Peptidyl-prolyl cis-trans isomerase C OS=Escherichia coli O6:H1
(strain CFT073 / ATCC 700928 / UPEC) GN=ppiC PE=3 SV=2
Length = 93
Score = 70.9 bits (172), Expect = 1e-11, Method: Composition-based stats.
Identities = 38/85 (44%), Positives = 54/85 (63%), Gaps = 4/85 (4%)
Query: 94 HLLVKEDDLNLLSELQRRVSQGREDLSDLAVEHSICPSKGEGGMLGWVRKGQLVPEFEEV 153
H+LVKE+ L L +L ++ G D LA +HSICPS GG LG R+GQ+VP F++V
Sbjct: 9 HILVKEEKLAL--DLLEQIKNG-ADFGKLAKKHSICPSGKRGGDLGEFRQGQMVPAFDKV 65
Query: 154 AFTTP-LNKVARCKTKFGWHLLQVL 177
F+ P L T+FG+H+++VL
Sbjct: 66 VFSCPVLEPTGPLHTQFGYHIIKVL 90
>sp|P0A9L7|PPIC_ECO57 Peptidyl-prolyl cis-trans isomerase C OS=Escherichia coli O157:H7
GN=ppiC PE=3 SV=2
Length = 93
Score = 70.9 bits (172), Expect = 1e-11, Method: Composition-based stats.
Identities = 38/85 (44%), Positives = 54/85 (63%), Gaps = 4/85 (4%)
Query: 94 HLLVKEDDLNLLSELQRRVSQGREDLSDLAVEHSICPSKGEGGMLGWVRKGQLVPEFEEV 153
H+LVKE+ L L +L ++ G D LA +HSICPS GG LG R+GQ+VP F++V
Sbjct: 9 HILVKEEKLAL--DLLEQIKNG-ADFGKLAKKHSICPSGKRGGDLGEFRQGQMVPAFDKV 65
Query: 154 AFTTP-LNKVARCKTKFGWHLLQVL 177
F+ P L T+FG+H+++VL
Sbjct: 66 VFSCPVLEPTGPLHTQFGYHIIKVL 90
>sp|Q60B78|SURA_METCA Chaperone SurA OS=Methylococcus capsulatus (strain ATCC 33009 /
NCIMB 11132 / Bath) GN=surA PE=3 SV=1
Length = 454
Score = 68.6 bits (166), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 49/122 (40%), Positives = 71/122 (58%), Gaps = 13/122 (10%)
Query: 88 REILVQ--HLLVKEDDLNLLSELQRRVSQGREDLSDLAVEHSICPSKG---EGGMLGWVR 142
R IL++ +L ED N L L+ R+ G +D ++LA HS KG +GG LGWV+
Sbjct: 293 RHILIRPNEVLSDEDAKNKLLALKTRIENG-DDFAELARGHS--DDKGSAIKGGDLGWVK 349
Query: 143 KGQLVPEFEEVAFTTPLNKVAR-CKTKFGWHLLQVLSEREAS----LLQDIQPDELHKKM 197
G LVP FEE N+++ +T+FGWHL+QVL +E+S +L++ DEL K+
Sbjct: 350 PGALVPPFEEAMNALDENQLSDPVQTQFGWHLIQVLERQESSDTNEVLKNRARDELFKRK 409
Query: 198 QD 199
D
Sbjct: 410 VD 411
Score = 33.9 bits (76), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 52/113 (46%), Gaps = 10/113 (8%)
Query: 78 TEGSSPGGGDREILVQHLLVKE------DDLNLLSELQRRVSQGRE---DLSDLAVEHSI 128
+G S DRE + H+L+ D++ E RV + + D D ++ +S
Sbjct: 168 AQGGSGAVADREYRLGHILIATPREASPDEVKKARERADRVVKELKAGLDFKDASIRYSD 227
Query: 129 CPSKGEGGMLGWVRKGQLVPEFEEVAFTTPLNKVAR-CKTKFGWHLLQVLSER 180
P EGG LGW + ++ EV +V+ ++ G+H++++L+ R
Sbjct: 228 DPQALEGGDLGWRKLSEIPSHIAEVVGGMKDGEVSDPIRSPGGYHIVKMLAMR 280
>sp|Q3JAF1|SURA_NITOC Chaperone SurA OS=Nitrosococcus oceani (strain ATCC 19707 / NCIMB
11848) GN=surA PE=3 SV=1
Length = 426
Score = 68.2 bits (165), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 75/134 (55%), Gaps = 12/134 (8%)
Query: 84 GGGDREILVQ----HLLVKEDDLNLLSELQRRVSQGR------EDLSDLAVEHSICPSKG 133
G G ++++ Q H+L++ D+L E+Q R+SQ R +D S+LA HS +
Sbjct: 273 GEGQQQLVTQTQARHILLRADELASEREVQLRLSQLRQRILSGDDFSELAQAHSDDKASA 332
Query: 134 -EGGMLGWVRKGQLVPEFEEVAFTTPLNKVAR-CKTKFGWHLLQVLSEREASLLQDIQPD 191
+GG LGWV GQ++P FEE + +++ KT+FGWH++QVL R+ ++ ++ +
Sbjct: 333 LKGGDLGWVSPGQMIPRFEEAMRSLEPGEISEPFKTQFGWHVVQVLDRRQENMTEEFNRN 392
Query: 192 ELHKKMQDPNFHKE 205
+++ +E
Sbjct: 393 RAKMEIRQRKVEEE 406
Score = 31.6 bits (70), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Query: 118 DLSDLAVEHSICPSKGEGGMLGWVRKGQLVPEFEEVAFTTPLNKVAR-CKTKFGWHLLQV 176
D +AV +S EGG LGW + GQL F +V +++ ++ G+H++++
Sbjct: 209 DFQKVAVTYSDGQQALEGGDLGWRKMGQLPTLFVDVVPQLQAGDISKLIRSPSGFHIVKL 268
Query: 177 LSER 180
L R
Sbjct: 269 LDYR 272
>sp|Q2S9C1|SURA_HAHCH Chaperone SurA OS=Hahella chejuensis (strain KCTC 2396) GN=surA
PE=3 SV=1
Length = 434
Score = 68.2 bits (165), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 52/162 (32%), Positives = 79/162 (48%), Gaps = 26/162 (16%)
Query: 36 QKPASFASFYKSLNPASNS----NSFHIHIISRSFTSPKAASFSSGTEGSSPGGGDREIL 91
Q P+ FA L P S NS +H ++ K S E S
Sbjct: 247 QVPSLFADVAPKLAPGQTSEPIRNSSGVHFVA---MLEKRGGVSKVVEQSK--------- 294
Query: 92 VQHLLVKEDDL-------NLLSELQRRVSQGREDLSDLAVEHSI-CPSKGEGGMLGWVRK 143
V+H+LV++++L L+ E+ +V G ED ++LA +S S GG L WV
Sbjct: 295 VRHILVQQNELRDEIAAKKLIEEIYGKVQAG-EDFAELAKAYSDDAVSAAAGGSLDWVNP 353
Query: 144 GQLVPEFEEVAFTTPLNKVAR-CKTKFGWHLLQVLSEREASL 184
G +VPEF+++ TP+ V++ ++ FGWH+LQV REA +
Sbjct: 354 GDMVPEFDQMMRETPVGAVSKPFQSTFGWHILQVQDRREADI 395
>sp|Q5WZN0|SURA_LEGPL Chaperone SurA OS=Legionella pneumophila (strain Lens) GN=surA PE=3
SV=1
Length = 429
Score = 68.2 bits (165), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 75/124 (60%), Gaps = 8/124 (6%)
Query: 92 VQHLLVKEDDLNLLSELQRRVS------QGREDLSDLAVEHSI-CPSKGEGGMLGWVRKG 144
V+H+L+K D + SE ++V+ Q +D + +A ++S+ S +GG LGWV G
Sbjct: 286 VRHILLKPDASMVPSEAIKQVNNIYRQIQSGKDFALMAKQYSLDAASAVKGGDLGWVNPG 345
Query: 145 QLVPEFEEVAFTTPLNKVAR-CKTKFGWHLLQVLSEREASLLQDIQPDELHKKMQDPNFH 203
+LVPEFE+ + PL+KV++ KT++GWHL++V++ R+ + + ++ + +Q F
Sbjct: 346 ELVPEFEKTMNSLPLHKVSKPVKTQYGWHLIEVIARRQKDDSEAFKKQQVRQFLQQRKFV 405
Query: 204 KEAQ 207
+ Q
Sbjct: 406 EAVQ 409
>sp|Q5X877|SURA_LEGPA Chaperone SurA OS=Legionella pneumophila (strain Paris) GN=surA
PE=3 SV=1
Length = 429
Score = 67.8 bits (164), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 75/124 (60%), Gaps = 8/124 (6%)
Query: 92 VQHLLVKEDDLNLLSELQRRVS------QGREDLSDLAVEHSI-CPSKGEGGMLGWVRKG 144
V+H+L+K D + SE ++V+ Q +D + +A ++S+ S +GG LGWV G
Sbjct: 286 VRHILLKPDASMVPSEAIKQVNNIYRQIQSGKDFALMAKQYSLDAASAVKGGDLGWVNPG 345
Query: 145 QLVPEFEEVAFTTPLNKVAR-CKTKFGWHLLQVLSEREASLLQDIQPDELHKKMQDPNFH 203
+LVPEFE+ + PL+KV++ KT++GWHL++V++ R+ + + ++ + +Q F
Sbjct: 346 ELVPEFEKTMNSLPLHKVSKPVKTQYGWHLIEVIARRQKDDSEAFKKQQVRQFLQQRKFV 405
Query: 204 KEAQ 207
+ Q
Sbjct: 406 EAVQ 409
>sp|Q5ZYR3|SURA_LEGPH Chaperone SurA OS=Legionella pneumophila subsp. pneumophila (strain
Philadelphia 1 / ATCC 33152 / DSM 7513) GN=surA PE=3
SV=2
Length = 429
Score = 67.8 bits (164), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 75/124 (60%), Gaps = 8/124 (6%)
Query: 92 VQHLLVKEDDLNLLSELQRRVS------QGREDLSDLAVEHSI-CPSKGEGGMLGWVRKG 144
V+H+L+K D + SE ++V+ Q +D + +A ++S+ S +GG LGWV G
Sbjct: 286 VRHILLKPDASMVPSEAIKQVNNIYRQIQSGKDFALMAKQYSLDAASAVKGGDLGWVNPG 345
Query: 145 QLVPEFEEVAFTTPLNKVAR-CKTKFGWHLLQVLSEREASLLQDIQPDELHKKMQDPNFH 203
+LVPEFE+ + PL+KV++ KT++GWHL++V++ R+ + + ++ + +Q F
Sbjct: 346 ELVPEFEKTMNSLPLHKVSKPVKTQYGWHLIEVIARRQKDDSEAFKKQQVRQFLQQRKFV 405
Query: 204 KEAQ 207
+ Q
Sbjct: 406 EAVQ 409
>sp|Q223E5|SURA_RHOFD Chaperone SurA OS=Rhodoferax ferrireducens (strain DSM 15236 / ATCC
BAA-621 / T118) GN=surA PE=3 SV=1
Length = 459
Score = 65.1 bits (157), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 43/121 (35%), Positives = 65/121 (53%), Gaps = 11/121 (9%)
Query: 105 LSELQRRVSQGREDLSDLAVEHSICPSKGEGGMLGWVRKGQLVPEFEEVAFT-TPLNKVA 163
L+E ++RV+ G+ D + LA +HS S +GG LGW G VPEFE V + TP
Sbjct: 337 LNEFKKRVAAGQADFAALARDHSQDGSAAQGGDLGWANPGMFVPEFEAVMNSLTPGQISE 396
Query: 164 RCKTKFGWHLLQVLSEREASLLQDIQPDE----LHKKMQDPNFHKEAQ------LIDVRE 213
++FG HL+Q++ R+A+L Q + LH+K D + AQ +++RE
Sbjct: 397 PLVSRFGVHLIQLMERRQATLSPQEQREAVRAMLHEKKLDEAYISWAQDVRGRAYVELRE 456
Query: 214 P 214
P
Sbjct: 457 P 457
>sp|Q7NQB0|SURA_CHRVO Chaperone SurA OS=Chromobacterium violaceum (strain ATCC 12472 /
DSM 30191 / JCM 1249 / NBRC 12614 / NCIMB 9131 / NCTC
9757) GN=surA PE=3 SV=1
Length = 429
Score = 65.1 bits (157), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 65/112 (58%), Gaps = 13/112 (11%)
Query: 93 QHLLVKEDDLNLLSELQRRVSQGREDL------SDLAVEHSICPSKGEGGMLGWVRKGQL 146
+H+L++ ++ ++ + R+ Q R+ + +D+A +S S +GG LGWV G L
Sbjct: 289 RHILIRTNEAVSEADAKARIDQVRDRIMRGAKFADMAKLYSEDGSNAKGGDLGWVNMGDL 348
Query: 147 VPEFEEVAFTTPLNKVAR-CKTKFGWHLLQVLSEREASLLQDIQPDELHKKM 197
VPEFE+ + P+ +V++ +T FGWHL+ V +R QD+ D H+KM
Sbjct: 349 VPEFEKAMVSLPIGQVSQPVRTPFGWHLILVEGKRN----QDVSSD--HEKM 394
>sp|Q1RI35|PLP_RICBR Parvulin-like PPIase OS=Rickettsia bellii (strain RML369-C) GN=plp
PE=3 SV=1
Length = 284
Score = 64.3 bits (155), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/101 (38%), Positives = 64/101 (63%), Gaps = 10/101 (9%)
Query: 86 GDREILVQHLLVK-EDDLNLLSELQRRVSQGREDLSDLAVEHSI-CPSKGEGGMLGWV-- 141
G +I V H+LVK E + N +L+ ++++G D + LA E S+ S GG++G++
Sbjct: 138 GKEQIKVAHILVKSEKEAN---DLKNKLNKGA-DFAKLAGESSLDKASATNGGVIGYILL 193
Query: 142 -RKGQLVPEFEEVAFTTPLNKVAR-CKTKFGWHLLQVLSER 180
+ GQLVPEFE AF +N+V+ KT +GWH+++VL ++
Sbjct: 194 NQPGQLVPEFENKAFALKVNEVSTPVKTDYGWHIIKVLEKK 234
>sp|Q4K4X7|SURA_PSEF5 Chaperone SurA OS=Pseudomonas fluorescens (strain Pf-5 / ATCC
BAA-477) GN=surA PE=1 SV=2
Length = 426
Score = 63.5 bits (153), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/155 (30%), Positives = 79/155 (50%), Gaps = 16/155 (10%)
Query: 84 GGGDR---EILVQHLLVK-------EDDLNLLSELQRRVSQGREDLSDLAVEHSICPSKG 133
GGG++ E+ V+H+L+K E+ L +L R+ G ED ++LA +S P
Sbjct: 268 GGGNQVRDEVHVRHILIKPSEIRSEEETKRLAQKLYDRIEAG-EDFAELAKSYSEDPGSA 326
Query: 134 -EGGMLGWVRKGQLVPEFEEVAFTTPLNKVAR-CKTKFGWHLLQVLSEREASLLQDIQPD 191
GG L W+ LVPEF EV TP ++++ K+ +GWH+L+VL R +
Sbjct: 327 LNGGDLNWIDPNALVPEFREVMAKTPQGQLSKPFKSPYGWHVLEVLGRRATDSTSQAREQ 386
Query: 192 ELHKKMQDPNFHKEAQ--LIDVREPEEVALSSLPG 224
+ +++ + +E Q L +R+ V + LPG
Sbjct: 387 QAMTVLRNRKYDEELQTWLRQIRDEAYVEI-KLPG 420
Score = 34.3 bits (77), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 40/75 (53%), Gaps = 2/75 (2%)
Query: 107 ELQRRVSQGREDLSDLAVEHSICPSKGEGGMLGWVRKGQLVPEFEEVAFTTPLNKVAR-C 165
E+ +++ QG D + LA+ S + EGG +GW + QL P F+ + + +
Sbjct: 194 EVYQQLKQG-ADFAQLAIARSGSDNALEGGDMGWRKAAQLPPPFDRELSAMAVGDITQPA 252
Query: 166 KTKFGWHLLQVLSER 180
+T G+ +L++L +R
Sbjct: 253 RTPGGFIILKLLDKR 267
>sp|Q1GZC0|SURA_METFK Chaperone SurA OS=Methylobacillus flagellatus (strain KT / ATCC
51484 / DSM 6875) GN=surA PE=3 SV=1
Length = 437
Score = 62.8 bits (151), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 64/115 (55%), Gaps = 8/115 (6%)
Query: 80 GSSPGGGDREILVQHLLVKEDDLNLLSELQRRVSQGRE------DLSDLAVEHSICPSKG 133
GSSP D + V+H+L+K ++ E +++++ +E D ++LA ++S S
Sbjct: 284 GSSPLVVD-QTHVRHILIKLSEVVSELEAEQKINSIKERLDHGADFAELARQYSEDASAN 342
Query: 134 EGGMLGWVRKGQLVPEFEEVAFTTPLNKV-ARCKTKFGWHLLQVLSEREASLLQD 187
GG LGW G VP FE+ +N++ A +T FGWH++QVL R+ + Q+
Sbjct: 343 NGGDLGWTNAGDTVPAFEKAMNALDINEISAPVRTPFGWHIIQVLERRKQDMTQE 397
Score = 32.3 bits (72), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 52/116 (44%), Gaps = 10/116 (8%)
Query: 78 TEGSSPGGGDREILVQHLLVKEDDLNLLSELQR---------RVSQGREDLSDLAVEHSI 128
T SS E V H+L++ + + ELQ+ + Q D + ++ +S
Sbjct: 170 TTQSSRNDIQDEFEVAHILIRAPEESTPEELQKLKAKAEAALKELQSGADFAQVSAGYSD 229
Query: 129 CPSKGEGGMLGWVRKGQLVPEF-EEVAFTTPLNKVARCKTKFGWHLLQVLSEREAS 183
P+ EGG+LGW QL F + + P ++ G+H+L++L+ R S
Sbjct: 230 APNALEGGILGWKASSQLPSLFVDALQALQPGQLSPVLRSPNGYHILKLLNRRGGS 285
>sp|Q121Q4|SURA_POLSJ Chaperone SurA OS=Polaromonas sp. (strain JS666 / ATCC BAA-500)
GN=surA PE=3 SV=1
Length = 473
Score = 62.4 bits (150), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 51/86 (59%), Gaps = 1/86 (1%)
Query: 105 LSELQRRVSQGREDLSDLAVEHSICPSKGEGGMLGWVRKGQLVPEFEEVAFTTPLNKVAR 164
L+ L++R+ G+ D + LA E+S S +GG LGW G VPEFE+V N+++
Sbjct: 351 LAALRKRILAGQADFAALARENSEDASAKQGGDLGWANPGMFVPEFEKVMNGLAPNQISD 410
Query: 165 -CKTKFGWHLLQVLSEREASLLQDIQ 189
++FG HL+QVL REA + Q Q
Sbjct: 411 PLVSRFGVHLIQVLERREAQMSQRDQ 436
Score = 38.5 bits (88), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 113 SQGREDLSDLAVEHSICPSKGEGGMLGWVRKGQLVPEFEEVAFTTPLNKVAR-CKTKFGW 171
++G D + LA E S P++G GG++G + P F E + + +A ++ G+
Sbjct: 249 ARGGADFAALANEFSDSPTRGTGGLMGLREADRYPPLFVESTKSLKVGGLAGPIRSGAGF 308
Query: 172 HLLQVLSEREASL 184
H+L+V+ +R+A +
Sbjct: 309 HILKVIEKRQAGM 321
>sp|Q1LRA3|SURA_RALME Chaperone SurA OS=Ralstonia metallidurans (strain CH34 / ATCC 43123
/ DSM 2839) GN=surA PE=3 SV=1
Length = 493
Score = 62.0 bits (149), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 49/170 (28%), Positives = 80/170 (47%), Gaps = 27/170 (15%)
Query: 38 PASFASFYKSLNPAS-------NSNSFHIHIISRSFTSPKAASFSSGTEGSSPGGGDR-- 88
PA FA+ L P + ++N FH+ + S T + P DR
Sbjct: 299 PAVFANAVVDLQPGAVVPEVLESANGFHVVKL-----------VSKRTAAAQPAASDRIA 347
Query: 89 EILVQHLLVKEDDLNLLSELQRRVSQGRE------DLSDLAVEHSICPSKGEGGMLGWVR 142
+ V+H+L++ +E +R+++ R+ D +D A +S S +GG LGWV
Sbjct: 348 QTQVRHILIRTGPNMPEAEAKRQMATIRDRITHGVDFADAARRYSQDGSASQGGELGWVS 407
Query: 143 KGQLVPEFEEVAFTTPLNKVAR-CKTKFGWHLLQVLSEREASLLQDIQPD 191
G+LVPEFE+ +++ T+FG HL+QV + RE + + Q D
Sbjct: 408 PGELVPEFEQAMNRLRPGEISDPVVTQFGVHLIQVENRRETEVSPEKQRD 457
>sp|Q8Y220|SURA_RALSO Chaperone SurA OS=Ralstonia solanacearum (strain GMI1000) GN=surA
PE=3 SV=2
Length = 496
Score = 62.0 bits (149), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 53/172 (30%), Positives = 79/172 (45%), Gaps = 25/172 (14%)
Query: 34 IFQKPASFASFYKSLNPASNSNSFHIHIISRSFTSPKAASF------SSGTEGSSPGGGD 87
I + PA FA+ L P ++ + SP A F +G++
Sbjct: 300 IGRLPAQFANAVVDLKPG--------QVVDQVIESP--AGFHVLKLVDKRAQGTAITAKV 349
Query: 88 REILVQHLLVK-------EDDLNLLSELQRRVSQGREDLSDLAVEHSICPSKGEGGMLGW 140
+ V+H+L+K +D L+ L+ R+ G D D A +S S GG LGW
Sbjct: 350 AQTQVRHILIKTGPTMSADDARRQLAGLRDRIVHG-YDFGDAARRYSQDTSASAGGELGW 408
Query: 141 VRKGQLVPEFEEVAFTTPLNKVAR-CKTKFGWHLLQVLSEREASLLQDIQPD 191
V GQLVPEFE+ +V++ +++FG HL+QV REA + D Q D
Sbjct: 409 VSPGQLVPEFEQAMGLLKPGEVSQPVQSQFGLHLIQVEGRREAEVPVDRQRD 460
>sp|Q4UKY0|PLP_RICFE Parvulin-like PPIase OS=Rickettsia felis (strain ATCC VR-1525 /
URRWXCal2) GN=plp PE=3 SV=1
Length = 282
Score = 62.0 bits (149), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 64/101 (63%), Gaps = 10/101 (9%)
Query: 86 GDREILVQHLLVK-EDDLNLLSELQRRVSQGREDLSDLAVEHSI-CPSKGEGGMLGWV-- 141
G +I V H+LVK + + N ++ ++S+G + + LA E S+ S GG++G++
Sbjct: 137 GKEQIKVAHILVKSQKEAN---NIKTKLSKGG-NFTKLAEESSLDKASASNGGVIGYILL 192
Query: 142 -RKGQLVPEFEEVAFTTPLNKVAR-CKTKFGWHLLQVLSER 180
+ GQLVPEFE+ AF +N+V+ KT FGWH+++VL ++
Sbjct: 193 NQPGQLVPEFEKKAFALKVNEVSTPVKTDFGWHIIKVLEKK 233
>sp|Q92H91|PLP_RICCN Parvulin-like PPIase OS=Rickettsia conorii (strain ATCC VR-613 /
Malish 7) GN=plp PE=3 SV=1
Length = 282
Score = 62.0 bits (149), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 65/101 (64%), Gaps = 10/101 (9%)
Query: 86 GDREILVQHLLVK-EDDLNLLSELQRRVSQGREDLSDLAVEHSI-CPSKGEGGMLGWV-- 141
G +I V H+LVK + + N +++ ++S+G + + LA E S+ S GG++G++
Sbjct: 137 GKEQIKVAHILVKSQKEAN---DIKTKLSKGG-NFTKLAEELSLDKASASNGGVIGYILL 192
Query: 142 -RKGQLVPEFEEVAFTTPLNKVAR-CKTKFGWHLLQVLSER 180
+ GQLVPEFE+ AF +N+V+ KT FGWH+++VL ++
Sbjct: 193 NQPGQLVPEFEKKAFALKVNEVSTPVKTDFGWHIIKVLEKK 233
>sp|Q9ZCX6|PLP_RICPR Parvulin-like PPIase OS=Rickettsia prowazekii (strain Madrid E)
GN=plp PE=3 SV=1
Length = 282
Score = 61.2 bits (147), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 37/101 (36%), Positives = 64/101 (63%), Gaps = 10/101 (9%)
Query: 86 GDREILVQHLLVK-EDDLNLLSELQRRVSQGREDLSDLAVEHSICPSKG-EGGMLGWV-- 141
G +I V H+LVK + + N + + ++S+G + + LA E S+ + GG++G++
Sbjct: 137 GKEQIKVAHILVKSQKEANTV---KTKLSKGG-NFTKLAEEFSLDKATASNGGIIGYIIL 192
Query: 142 -RKGQLVPEFEEVAFTTPLNKVAR-CKTKFGWHLLQVLSER 180
+ GQLVPEFE+ AF +N+V+ KT FGWH+++VL ++
Sbjct: 193 NQPGQLVPEFEQKAFALKVNEVSTPVKTSFGWHIIKVLEKK 233
>sp|Q48NT5|SURA_PSE14 Chaperone SurA OS=Pseudomonas syringae pv. phaseolicola (strain
1448A / Race 6) GN=surA PE=3 SV=2
Length = 428
Score = 61.2 bits (147), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/147 (30%), Positives = 73/147 (49%), Gaps = 13/147 (8%)
Query: 89 EILVQHLLVKEDDLNLLSELQR-------RVSQGREDLSDLAVEHSICPSKG-EGGMLGW 140
E+ V+H+L+K ++ E +R R+ G ED ++LA S P GG L W
Sbjct: 278 EVHVRHILIKPSEIRNEEETKRLAEKIYDRIQNG-EDFAELAKSFSEDPGSALNGGDLNW 336
Query: 141 VRKGQLVPEFEEVAFTTPLNKVAR-CKTKFGWHLLQVLSEREASLLQDIQPDELHKKMQD 199
V LVPEF +V TP ++++ KT +GWH+L+VL R + + +++
Sbjct: 337 VDPNSLVPEFRQVMNETPQGELSKPFKTAYGWHVLEVLGRRSTDATDQAREQQALNVLRN 396
Query: 200 PNFHKEAQ--LIDVREPEEVALSSLPG 224
+ +E Q L +R+ V + LPG
Sbjct: 397 RKYDEELQTWLRQIRDEAYVEI-KLPG 422
Score = 34.3 bits (77), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Query: 118 DLSDLAVEHSICPSKGEGGMLGWVRKGQLVPEFEEVAFTTPLNKVA-RCKTKFGWHLLQV 176
D + LA S + EGG +GW + QL P F ++ P+ V +T G+ +L++
Sbjct: 204 DFTRLAATTSSSENALEGGDMGWRKAAQLPPPFGDMLSAMPVGDVTPPARTPGGFIILKL 263
Query: 177 LSER 180
L +R
Sbjct: 264 LEKR 267
>sp|Q68WG0|PLP_RICTY Parvulin-like PPIase OS=Rickettsia typhi (strain ATCC VR-144 /
Wilmington) GN=plp PE=3 SV=2
Length = 282
Score = 60.5 bits (145), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/101 (36%), Positives = 63/101 (62%), Gaps = 10/101 (9%)
Query: 86 GDREILVQHLLVK-EDDLNLLSELQRRVSQGREDLSDLAVEHSICPSKG-EGGMLGWV-- 141
G +I V H+LVK + + N + + ++S+G + + LA E S+ + GG++G++
Sbjct: 137 GKEQIKVAHILVKSQKEANTV---KTKLSKGG-NFNKLAEEFSLDKATASNGGVIGYIIL 192
Query: 142 -RKGQLVPEFEEVAFTTPLNKVAR-CKTKFGWHLLQVLSER 180
+ GQLVPEFE AF +N+V+ KT FGWH+++VL ++
Sbjct: 193 NQSGQLVPEFENKAFALKVNEVSTPVKTDFGWHIIKVLEKK 233
>sp|Q82W17|SURA_NITEU Chaperone SurA OS=Nitrosomonas europaea (strain ATCC 19718 / NBRC
14298) GN=surA PE=3 SV=1
Length = 448
Score = 60.5 bits (145), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/96 (38%), Positives = 51/96 (53%), Gaps = 9/96 (9%)
Query: 93 QHLLVK-------EDDLNLLSELQRRVSQGREDLSDLAVEHSICPSKGEGGMLGWVRKGQ 145
QH+L+K ED L+++L R+ G D D+A HS S GG LGWV G
Sbjct: 308 QHILIKVSELVSEEDAHQLINQLMERIHNG-ADFMDVAKAHSEDASASAGGDLGWVSPGD 366
Query: 146 LVPEFEEVAFTTPLNKVA-RCKTKFGWHLLQVLSER 180
VPEFE+ +V+ +T FGWHL++V+ R
Sbjct: 367 TVPEFEQAMNALLPGQVSPPVRTPFGWHLIKVIERR 402
Score = 35.4 bits (80), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 51/114 (44%), Gaps = 11/114 (9%)
Query: 78 TEGSSPGGGDREILVQHLLVK---EDDLNLLSELQRRVSQGRE------DLSDLAVEHSI 128
+ +SP G + E + H+LV+ + D + +R E D ++ E S
Sbjct: 182 NQANSPAGNE-EYRIAHILVQISEQMDEAQIEARHKRAETAYESLRQGADFVRVSAEFSD 240
Query: 129 CPSKGEGGMLGWVRKGQLVPEFEEVAFTTPLNKVA-RCKTKFGWHLLQVLSERE 181
P +GG LGW GQL F E+ +V ++ G+H+L++L R+
Sbjct: 241 APDAMQGGELGWRPLGQLGSPFTEMLVNMQPGEVTPVVRSPVGFHILKLLERRQ 294
>sp|Q81GY5|PRSA1_BACCR Foldase protein PrsA 1 OS=Bacillus cereus (strain ATCC 14579 / DSM
31) GN=prsA1 PE=3 SV=1
Length = 286
Score = 60.1 bits (144), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 74/133 (55%), Gaps = 9/133 (6%)
Query: 89 EILVQHLLVKEDDLNLLSELQRRVSQGREDLSDLAVEHS-ICPSKGEGGMLGWVRKGQLV 147
EI H+LVK D +++ + QG+ +LA ++S SK +GG LG+ G++V
Sbjct: 132 EIKASHILVK--DEATAKKVKEELGQGKS-FEELAKQYSEDTGSKEKGGDLGYFTAGKMV 188
Query: 148 PEFEEVAFTTPLNKVAR-CKTKFGWHLLQVLSEREAS----LLQDIQPDELHKKMQDPNF 202
EFE+ A+ ++V+ K++FG+H+++V +E + DI+ D + KK QD F
Sbjct: 189 KEFEDAAYKLKKDEVSEPVKSQFGYHIIKVTDIKEQKPFDEVKGDIKKDLVQKKAQDAAF 248
Query: 203 HKEAQLIDVREPE 215
+ + ++++ +
Sbjct: 249 MNDLMMKEIKKAD 261
>sp|Q3SGF9|SURA_THIDA Chaperone SurA OS=Thiobacillus denitrificans (strain ATCC 25259)
GN=surA PE=3 SV=1
Length = 436
Score = 59.7 bits (143), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 58/106 (54%), Gaps = 9/106 (8%)
Query: 92 VQHLLVKEDDL-------NLLSELQRRVSQGREDLSDLAVEHSICPSKGEGGMLGWVRKG 144
+H+L+K +++ N L +L+ R+ G + +LA HS S +GG LGW+ G
Sbjct: 296 ARHILIKTNEITSEADARNRLLQLKERIDNGVK-FDELARLHSEDASASKGGDLGWINPG 354
Query: 145 QLVPEFEEVAFTTPLNKV-ARCKTKFGWHLLQVLSEREASLLQDIQ 189
VP+FE+ +V A ++ FGWHL+QVL R+ + Q+ Q
Sbjct: 355 DTVPDFEKAMNALQPGEVSAPVQSPFGWHLIQVLERRDQDVTQERQ 400
>sp|Q88A44|SURA_PSESM Chaperone SurA OS=Pseudomonas syringae pv. tomato (strain DC3000)
GN=surA PE=3 SV=1
Length = 428
Score = 59.7 bits (143), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/147 (31%), Positives = 75/147 (51%), Gaps = 13/147 (8%)
Query: 89 EILVQHLLVK------EDDLNLLSE-LQRRVSQGREDLSDLAVEHSICPSKG-EGGMLGW 140
E+ V+H+L+K E+ LL++ + R+ G ED + LA S P GG L W
Sbjct: 278 EVHVRHILIKPSEIRSEEATKLLAQKIYERIENG-EDFATLAKSFSEDPGSALNGGDLNW 336
Query: 141 VRKGQLVPEFEEVAFTTPLNKVAR-CKTKFGWHLLQVLSEREASLLQDIQPDELHKKMQD 199
V LVPEF +V +TP ++++ KT +GWH+L+VL R + + +++
Sbjct: 337 VDPNSLVPEFRDVMSSTPQGELSKPFKTAYGWHVLEVLGRRATDATGQARDQQALSVLRN 396
Query: 200 PNFHKEAQ--LIDVREPEEVALSSLPG 224
+ +E Q L +R+ V + LPG
Sbjct: 397 RKYDEELQTWLRQIRDEAYVEI-KLPG 422
Score = 34.7 bits (78), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Query: 118 DLSDLAVEHSICPSKGEGGMLGWVRKGQLVPEFEEVAFTTPLNKVA-RCKTKFGWHLLQV 176
D + +A S + EGG +GW + QL P F ++ + P+ V +T G+ +L++
Sbjct: 204 DFAKIAATTSSSENALEGGDMGWRKAAQLPPPFGDMLSSMPIGDVTPPARTPGGFIILKL 263
Query: 177 LSER 180
L +R
Sbjct: 264 LEKR 267
>sp|Q5L289|PRSA_GEOKA Foldase protein PrsA OS=Geobacillus kaustophilus (strain HTA426)
GN=prsA PE=3 SV=1
Length = 281
Score = 59.3 bits (142), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 64/116 (55%), Gaps = 8/116 (6%)
Query: 90 ILVQHLLVKEDDLNLLSELQRRVSQGREDLSDLAVEHSICP-SKGEGGMLGWVRKGQLVP 148
I H+LVK D E++ ++ +G ED S LA E+S P S GG LGW G++V
Sbjct: 136 IRASHILVK--DEKTAKEVKAKLDKG-EDFSKLAKEYSQDPGSASNGGDLGWFGPGKMVK 192
Query: 149 EFEEVAFTTPLNKVAR-CKTKFGWHLLQVLSEREASLLQDIQPD---ELHKKMQDP 200
EFEE A+ + +V+ KT +G+H+++V + + +++ + E+ + DP
Sbjct: 193 EFEEAAYKLKVGEVSDPVKTDYGYHIIKVTDKEKKKSFNEMKDEIAFEVKRNKLDP 248
>sp|Q4ZMG7|SURA_PSEU2 Chaperone SurA OS=Pseudomonas syringae pv. syringae (strain B728a)
GN=surA PE=3 SV=2
Length = 428
Score = 58.9 bits (141), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 44/147 (29%), Positives = 73/147 (49%), Gaps = 13/147 (8%)
Query: 89 EILVQHLLVKEDDLNLLSELQR-------RVSQGREDLSDLAVEHSICPSKG-EGGMLGW 140
E+ V+H+L+K ++ E +R R+ G ED ++LA S P GG L W
Sbjct: 278 EVHVRHILIKPSEIRNEEETKRLAQKIYDRIENG-EDFAELAKSFSEDPGSALNGGDLNW 336
Query: 141 VRKGQLVPEFEEVAFTTPLNKVAR-CKTKFGWHLLQVLSEREASLLQDIQPDELHKKMQD 199
V LVPEF +V TP +++ +T++GWH+L+VL R + + +++
Sbjct: 337 VDPNSLVPEFRQVMSETPQGVLSKPFQTQYGWHVLEVLGRRSTDATDQAREQQALNVLRN 396
Query: 200 PNFHKEAQ--LIDVREPEEVALSSLPG 224
+ +E Q L +R+ V + LPG
Sbjct: 397 RKYDEELQTWLRQIRDEAYVEI-KLPG 422
Score = 34.7 bits (78), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Query: 118 DLSDLAVEHSICPSKGEGGMLGWVRKGQLVPEFEEVAFTTPLNKVA-RCKTKFGWHLLQV 176
D + LA S + EGG +GW + QL P F ++ + P+ V +T G+ +L++
Sbjct: 204 DFTRLAATSSSSENALEGGDMGWRKAAQLPPPFGDMLSSMPVGDVTPPARTPGGFIILKL 263
Query: 177 LSER 180
L +R
Sbjct: 264 LEKR 267
>sp|Q2KXA6|SURA_BORA1 Chaperone SurA OS=Bordetella avium (strain 197N) GN=surA PE=3 SV=1
Length = 506
Score = 58.9 bits (141), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 58/105 (55%), Gaps = 3/105 (2%)
Query: 88 REILVQHLLVKEDD--LNLLSELQRRVSQGREDLSDLAVEHSICPSKGEGGMLGWVRKGQ 145
R IL++ V D L ++++R+ G D+A ++S + +GG LGWV G+
Sbjct: 357 RHILIKTSAVMSDQQARQRLEQVRQRLESGSAKFEDMARQYSQDATAPQGGDLGWVNPGE 416
Query: 146 LVPEFEEVAFTTPLNKVAR-CKTKFGWHLLQVLSEREASLLQDIQ 189
+VP FE + ++++ ++ FGWHL+QVL R+ + ++Q
Sbjct: 417 MVPSFEAAMNSLKPGEISQPVESPFGWHLVQVLERRQKDVTDEMQ 461
>sp|Q9KDN4|PRSA_BACHD Foldase protein PrsA OS=Bacillus halodurans (strain ATCC BAA-125 /
DSM 18197 / FERM 7344 / JCM 9153 / C-125) GN=prsA PE=3
SV=1
Length = 333
Score = 58.9 bits (141), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 65/113 (57%), Gaps = 12/113 (10%)
Query: 89 EILVQHLLVKEDDLNLLSELQRRVSQGREDLSDLAVEHSICPS-KGEGGMLGWVRKGQLV 147
E+ H+LV+ D E+ R+ G +D ++LA E+S+ PS + G LG+ KG +V
Sbjct: 157 EVEASHILVE--DEETAEEVLDRLEAG-DDFAELASEYSVDPSAEANNGDLGFFGKGDMV 213
Query: 148 PEFEEVAFTTPLNKVAR-CKTKFGWHLLQVLSEREASLLQDIQPDELHKKMQD 199
PEFEE AF +++V+ ++ +G+H++ V +++ +EL +K+ D
Sbjct: 214 PEFEEAAFNMEIDEVSEPVESTYGYHIILVTDRKDSY-------EELEEKIHD 259
>sp|Q7WG19|SURA_BORBR Chaperone SurA OS=Bordetella bronchiseptica (strain ATCC BAA-588 /
NCTC 13252 / RB50) GN=surA PE=3 SV=1
Length = 519
Score = 58.5 bits (140), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 65/128 (50%), Gaps = 10/128 (7%)
Query: 72 ASFSSGTEGSSPGGGDR--EILVQHLLVKEDDLNLLSELQRRVSQGREDL-------SDL 122
+SF G ++P G R + +H+L+K + + ++R+ Q RE L D+
Sbjct: 347 SSFQEGPSVAAPQGPVRVTQTHARHILIKTSTVMTDDQARQRLEQIRERLQGGAVKFEDM 406
Query: 123 AVEHSICPSKGEGGMLGWVRKGQLVPEFEEVAFTTPLNKVA-RCKTKFGWHLLQVLSERE 181
A ++S + +GG LGWV G VP FE N+++ + FGWHL+QVL RE
Sbjct: 407 ARQYSQDSTAPQGGDLGWVNPGDTVPPFEAAMNALQPNEISPPVLSPFGWHLIQVLERRE 466
Query: 182 ASLLQDIQ 189
+ ++Q
Sbjct: 467 HDVSDEVQ 474
>sp|O32072|YTWF_BACSU Uncharacterized protein YtwF OS=Bacillus subtilis (strain 168)
GN=ytwF PE=4 SV=2
Length = 103
Score = 58.5 bits (140), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 40/111 (36%), Positives = 56/111 (50%), Gaps = 17/111 (15%)
Query: 182 ASLLQDIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDIT 241
A+L + I+ DE E LIDVRE EEVA +P Q + +R G P+
Sbjct: 9 AALKEKIEADE------------ELYLIDVREDEEVAEGMIP--QAVHIR-MGDI-PEKM 52
Query: 242 VKFDPQKDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGIHAYATKVDPS 292
D K+ +C GMRS+ V ++L QGF+ V NV GG+ A+ + P
Sbjct: 53 ETLDKDKEYVFICRSGMRSMNVCKYLDEQGFKTV-NVEGGMMAWEGETKPK 102
>sp|Q7W4J5|SURA_BORPA Chaperone SurA OS=Bordetella parapertussis (strain 12822 / ATCC
BAA-587 / NCTC 13253) GN=surA PE=3 SV=1
Length = 519
Score = 58.5 bits (140), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 65/128 (50%), Gaps = 10/128 (7%)
Query: 72 ASFSSGTEGSSPGGGDR--EILVQHLLVKEDDLNLLSELQRRVSQGREDL-------SDL 122
+SF G ++P G R + +H+L+K + + ++R+ Q RE L D+
Sbjct: 347 SSFQEGPSVAAPQGPVRVTQTHARHILIKTSTVMTDDQARQRLEQIRERLQGGAVKFEDM 406
Query: 123 AVEHSICPSKGEGGMLGWVRKGQLVPEFEEVAFTTPLNKVA-RCKTKFGWHLLQVLSERE 181
A ++S + +GG LGWV G VP FE N+++ + FGWHL+QVL RE
Sbjct: 407 ARQYSQDSTAPQGGDLGWVNPGDTVPPFEAAMNALQPNEISPPVLSPFGWHLIQVLERRE 466
Query: 182 ASLLQDIQ 189
+ ++Q
Sbjct: 467 HDVSDEVQ 474
>sp|Q21MS8|SURA_SACD2 Chaperone SurA OS=Saccharophagus degradans (strain 2-40 / ATCC
43961 / DSM 17024) GN=surA PE=3 SV=1
Length = 430
Score = 58.2 bits (139), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 50/190 (26%), Positives = 82/190 (43%), Gaps = 38/190 (20%)
Query: 38 PASFASFYKSLN------PASNSNSFHIHIISRSFTSPKAASFSSGTEGSSPGGGDREIL 91
P FA SLN P + FHI + S GG ++I+
Sbjct: 245 PTLFAELLPSLNNGDVTKPTRSQAGFHIIKLYES------------------RGGQKQIV 286
Query: 92 VQ----HLLVKEDDL-------NLLSELQRRVSQGREDLSDLAVEHS-ICPSKGEGGMLG 139
Q H+LVK ++ L ++++++ G D ++LA HS S+ GG LG
Sbjct: 287 NQTRARHILVKTSEILNDAKAEAKLKDIRQQILDG-ADFAELAKTHSEDIGSRMSGGDLG 345
Query: 140 WVRKGQLVPEFEEVAFTTPLNKVAR-CKTKFGWHLLQVLSEREASLLQDIQPDELHKKMQ 198
W G VP FE+ T ++++ K++FGWH+++V RE + Q+ + +
Sbjct: 346 WATPGTFVPAFEKTMAETKEGEISQPFKSRFGWHIMKVEERREEDMTQEALRQKARNMIM 405
Query: 199 DPNFHKEAQL 208
F E Q+
Sbjct: 406 SRRFEDETQI 415
>sp|Q7VU12|SURA_BORPE Chaperone SurA OS=Bordetella pertussis (strain Tohama I / ATCC
BAA-589 / NCTC 13251) GN=surA PE=3 SV=1
Length = 519
Score = 58.2 bits (139), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 65/128 (50%), Gaps = 10/128 (7%)
Query: 72 ASFSSGTEGSSPGGGDR--EILVQHLLVKEDDLNLLSELQRRVSQGREDL-------SDL 122
+SF G ++P G R + +H+L+K + + ++R+ Q RE L D+
Sbjct: 347 SSFQEGPSVAAPQGPVRVTQTHARHILIKTSTVMTDDQARQRLEQIRERLQGGAVKFEDM 406
Query: 123 AVEHSICPSKGEGGMLGWVRKGQLVPEFEEVAFTTPLNKVA-RCKTKFGWHLLQVLSERE 181
A ++S + +GG LGWV G VP FE N+++ + FGWHL+QVL RE
Sbjct: 407 ARQYSQDSTAPQGGDLGWVNPGDTVPPFEAAMNALQPNEISPPMLSPFGWHLIQVLERRE 466
Query: 182 ASLLQDIQ 189
+ ++Q
Sbjct: 467 HDVSDEVQ 474
>sp|Q81U45|PRSA1_BACAN Foldase protein PrsA 1 OS=Bacillus anthracis GN=prsA1 PE=1 SV=1
Length = 287
Score = 57.4 bits (137), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 76/134 (56%), Gaps = 10/134 (7%)
Query: 89 EILVQHLLVKEDDLNLLSELQRRVSQGREDLSDLAVEHS-ICPSKGEGGMLGWVRKGQLV 147
EI H+LVK D +++ + QG+ +LA ++S SK +GG LG+ G++V
Sbjct: 132 EIKASHILVK--DEATAKKVKEELGQGKS-FEELAKQYSEDTGSKEKGGDLGFFGAGKMV 188
Query: 148 PEFEEVAFTTPLNKVAR-CKTKFGWHLLQV--LSEREASLLQ---DIQPDELHKKMQDPN 201
EFE+ A+ ++V+ K++FG+H+++V + E E S Q DI+ + + KK QD
Sbjct: 189 KEFEDAAYKLKKDEVSEPVKSQFGYHIIKVTDIKEPEKSFEQSKADIKKELVAKKSQDGE 248
Query: 202 FHKEAQLIDVREPE 215
F + + ++++ +
Sbjct: 249 FMNDLMMKEIKKAD 262
>sp|Q2YBP3|SURA_NITMU Chaperone SurA OS=Nitrosospira multiformis (strain ATCC 25196 /
NCIMB 11849) GN=surA PE=3 SV=1
Length = 440
Score = 57.4 bits (137), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 56/103 (54%), Gaps = 7/103 (6%)
Query: 92 VQHLLVKEDDLNLLSELQRRVSQGREDLS------DLAVEHSICPSKGEGGMLGWVRKGQ 145
+H+L+K +L ++ RRV++ +E L +LA HS S GG LGW+ G
Sbjct: 299 ARHILIKISELTSEADAHRRVTELKERLDNGSKFEELAKLHSEDASAPTGGDLGWISPGD 358
Query: 146 LVPEFEE-VAFTTPLNKVARCKTKFGWHLLQVLSEREASLLQD 187
VPEFE+ ++ P + ++ FGWHL+QV+ R + Q+
Sbjct: 359 TVPEFEQAMSALKPGEISSPVQSPFGWHLIQVIERRTQDVSQE 401
Score = 33.9 bits (76), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 52/116 (44%), Gaps = 17/116 (14%)
Query: 78 TEGSSPGGGDREILVQHLLVK----EDDLNLLSELQR------RVSQGREDLSDLAVEHS 127
T+ SP D E + H+L++ D L + QR ++ G E + +A E S
Sbjct: 174 TQEDSPSQSD-EYRIAHILIQVSEGADPLKRDAARQRAESALAKLKAGTE-FAQVAAEFS 231
Query: 128 ICPSKGEGGMLGWVRKGQLVPEFEEVAFTTPLNK---VARCKTKFGWHLLQVLSER 180
P EGG+L W QL +F E+ TP+ + G+H+L+++ R
Sbjct: 232 DAPDAMEGGLLNWRPAAQLTKKFAEI--LTPMKPGEITGIIPSPNGFHILKLVERR 285
>sp|Q3K5T4|SURA_PSEPF Chaperone SurA OS=Pseudomonas fluorescens (strain Pf0-1) GN=surA
PE=3 SV=1
Length = 426
Score = 57.4 bits (137), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/147 (29%), Positives = 75/147 (51%), Gaps = 13/147 (8%)
Query: 89 EILVQHLLVK----EDDLN---LLSELQRRVSQGREDLSDLAVEHSICPSKG-EGGMLGW 140
E+ V+H+LVK D+ L L R+ G ED ++LA ++S P GG L W
Sbjct: 276 EVHVRHILVKPSPVRDEAKTKELAQSLYNRIEAG-EDFAELAKKYSEDPGSALNGGDLNW 334
Query: 141 VRKGQLVPEFEEVAFTTPLNKVAR-CKTKFGWHLLQVLSEREASLLQDIQPDELHKKMQD 199
+ LVPEF V +P ++++ +T++GWH+L+VL R + + + +++
Sbjct: 335 IDPNALVPEFRAVMAKSPQGQLSKPFQTQYGWHVLEVLGRRATDSTEQAREQQAMTVLRN 394
Query: 200 PNFHKEAQ--LIDVREPEEVALSSLPG 224
+ +E Q L +R+ V + LPG
Sbjct: 395 RKYDEELQTWLRQIRDEAYVEI-KLPG 420
Score = 34.3 bits (77), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 40/75 (53%), Gaps = 2/75 (2%)
Query: 107 ELQRRVSQGREDLSDLAVEHSICPSKGEGGMLGWVRKGQLVPEFEEVAFTTPLNKVAR-C 165
E+ +++ QG D +AV +S + EGG +GW + QL P F+ + + +
Sbjct: 194 EVYQQLKQG-ADFGQMAVANSASDNALEGGDMGWRKAAQLPPPFDRELSSMATGDITQPA 252
Query: 166 KTKFGWHLLQVLSER 180
+T G+ +L++L +R
Sbjct: 253 RTPGGFIILKLLEKR 267
>sp|Q9I5U3|SURA_PSEAE Chaperone SurA OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1
/ 1C / PRS 101 / LMG 12228) GN=surA PE=3 SV=2
Length = 417
Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 55/101 (54%), Gaps = 10/101 (9%)
Query: 89 EILVQHLLVKEDDL-------NLLSELQRRVSQGREDLSDLAVEHSICPSKG-EGGMLGW 140
E+ V+H+L+K ++ L +L R+ G ED +LA S P GG L W
Sbjct: 275 EVHVRHILLKPSEIRSEAETEKLAQKLYERIQSG-EDFGELAKSFSEDPGSALNGGDLNW 333
Query: 141 VRKGQLVPEFEEVAFTTPLNKVAR-CKTKFGWHLLQVLSER 180
+ LVPEF +V TP ++++ +++FGWH+LQVL R
Sbjct: 334 IDPEALVPEFRQVMNDTPQGELSKPFRSQFGWHILQVLGRR 374
Score = 31.2 bits (69), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 44/89 (49%), Gaps = 5/89 (5%)
Query: 107 ELQRRVSQGREDLSDLAVEHSICPSKGEGGMLGWVRKGQLVPEFEEVAFTTPLNKVAR-C 165
EL +++ QG D LA+ S + EGG +GW + QL F+ + + + V
Sbjct: 193 ELYQQLKQG-ADFGQLAISRSAGDNALEGGEIGWRKAAQLPQPFDSMIGSLAVGDVTEPV 251
Query: 166 KTKFGWHLLQVLSEREASLLQDIQPDELH 194
+T G+ +L++ +R S + DE+H
Sbjct: 252 RTPGGFIILKLEEKRGGS---KMVRDEVH 277
>sp|A4IKU2|PRSA_GEOTN Foldase protein PrsA OS=Geobacillus thermodenitrificans (strain
NG80-2) GN=prsA PE=3 SV=1
Length = 278
Score = 56.6 bits (135), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 52/85 (61%), Gaps = 5/85 (5%)
Query: 94 HLLVKEDDLNLLSELQRRVSQGREDLSDLAVEHSICP-SKGEGGMLGWVRKGQLVPEFEE 152
H+LV +D E++ ++ +G ED + LA E+S P S GG LGW G++V EFEE
Sbjct: 140 HILV--EDEKTAKEVKAKLDKG-EDFAKLAKEYSQDPGSASNGGDLGWFGAGKMVKEFEE 196
Query: 153 VAFTTPLNKVAR-CKTKFGWHLLQV 176
A+ + +V+ KT +G+H+++V
Sbjct: 197 AAYKLKVGEVSDPIKTDYGYHIIKV 221
>sp|Q8R760|PRSA_THETN Foldase protein PrsA OS=Thermoanaerobacter tengcongensis (strain
DSM 15242 / JCM 11007 / NBRC 100824 / MB4) GN=prsA PE=3
SV=1
Length = 306
Score = 55.8 bits (133), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 54/85 (63%), Gaps = 5/85 (5%)
Query: 93 QHLLVKEDDLNLLSELQRRVSQGREDLSDLAVEHSI-CPSKGEGGMLGWVRKGQLVPEFE 151
+H+LV D ++ +R+ +G ED + LA E+SI +K GG LG G +VPEFE
Sbjct: 171 RHILVA--DEKTAEDIYQRLMKG-EDFAALAKEYSIDTATKDNGGDLGEFPHGVMVPEFE 227
Query: 152 EVAFTTPLNKVAR-CKTKFGWHLLQ 175
E AF+ L ++++ KT++G+H+++
Sbjct: 228 EAAFSLKLGEISKPVKTQYGYHIIK 252
>sp|Q8CXK4|PRSA_OCEIH Foldase protein PrsA OS=Oceanobacillus iheyensis (strain DSM 14371
/ JCM 11309 / KCTC 3954 / HTE831) GN=prsA PE=3 SV=1
Length = 299
Score = 55.8 bits (133), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 71/116 (61%), Gaps = 12/116 (10%)
Query: 89 EILVQHLLVK-EDDLNLLSELQRRVSQGREDLSDLAVEHSICPSKGE-GGMLGWVRKGQL 146
EI QH+L++ E+D+ +E+Q+++ G ED +LA E+S E GG LG+ G +
Sbjct: 139 EIQAQHILLENEEDV---AEVQQKIEDG-EDFGELAQEYSTDTGSAENGGDLGYFSAGSM 194
Query: 147 VPEFEEVAFTTPLNKVAR-CKTKFGWHLLQV--LSEREASL--LQDIQPDELHKKM 197
VPEFEE AF+ +++ ++ G H+++V + E+E S+ +D++ EL +++
Sbjct: 195 VPEFEEAAFSLEAGEISDPVQSTHGTHIIKVNDVREKEESIGEFEDVKK-ELEREI 249
>sp|Q81CB1|PRSA4_BACCR Foldase protein PrsA 4 OS=Bacillus cereus (strain ATCC 14579 / DSM
31) GN=prsA4 PE=3 SV=1
Length = 280
Score = 55.5 bits (132), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 70/121 (57%), Gaps = 9/121 (7%)
Query: 92 VQHLLVKEDDLNLLSELQRRVSQGREDLSDLAVEHSICP-SKGEGGMLGWVRKGQLVPEF 150
V H+LVK D E++ +++ G ED + LA ++S P SK +GG L G +V EF
Sbjct: 137 VSHILVK--DEKTAKEIKEKLNSG-EDFAALAKQYSEDPGSKEKGGELSEFGPGMMVKEF 193
Query: 151 EEVAFTTPLNKVAR-CKTKFGWHLLQVLSERE----ASLLQDIQPDELHKKMQDPNFHKE 205
E+ A+ + +++ K+ FG+H++++ ++E ++I+ + +++QDP FH++
Sbjct: 194 EDAAYKLEVGQLSEPVKSSFGYHIIKLTDKKELKPYEEEKENIRKELEQQRIQDPQFHQQ 253
Query: 206 A 206
Sbjct: 254 V 254
>sp|P0A3Y9|NIFM_KLEPN Putative peptidyl-prolyl cis-trans isomerase NifM OS=Klebsiella
pneumoniae GN=nifM PE=3 SV=1
Length = 266
Score = 55.5 bits (132), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 56/105 (53%), Gaps = 6/105 (5%)
Query: 91 LVQHLLVKED-DLNLLSE----LQRRVSQGREDLSDLAVEHSICPSKGEGGMLGWVRKGQ 145
L +HLL+ D D + + L R+++ R+ + LA HS CPS E G LGW+ +G
Sbjct: 128 LTRHLLLTVDNDREAVHQRILGLYRQINASRDAFAPLAQRHSHCPSALEEGRLGWISRGL 187
Query: 146 LVPEFEEVAFTTPLNKVAR-CKTKFGWHLLQVLSEREASLLQDIQ 189
L P+ E F+ N ++ ++ GWHLL + R A+ ++ Q
Sbjct: 188 LYPQLETALFSLAENALSLPIASELGWHLLWCEAIRPAAPMEPQQ 232
>sp|P0A3Z0|NIFM_KLEOX Putative peptidyl-prolyl cis-trans isomerase NifM OS=Klebsiella
oxytoca GN=nifM PE=3 SV=1
Length = 266
Score = 55.5 bits (132), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 56/105 (53%), Gaps = 6/105 (5%)
Query: 91 LVQHLLVKED-DLNLLSE----LQRRVSQGREDLSDLAVEHSICPSKGEGGMLGWVRKGQ 145
L +HLL+ D D + + L R+++ R+ + LA HS CPS E G LGW+ +G
Sbjct: 128 LTRHLLLTVDNDREAVHQRILGLYRQINASRDAFAPLAQRHSHCPSALEEGRLGWISRGL 187
Query: 146 LVPEFEEVAFTTPLNKVAR-CKTKFGWHLLQVLSEREASLLQDIQ 189
L P+ E F+ N ++ ++ GWHLL + R A+ ++ Q
Sbjct: 188 LYPQLETALFSLAENALSLPIASELGWHLLWCEAIRPAAPMEPQQ 232
>sp|Q39D35|SURA_BURS3 Chaperone SurA OS=Burkholderia sp. (strain 383) GN=surA PE=3 SV=1
Length = 452
Score = 55.5 bits (132), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 48/79 (60%), Gaps = 2/79 (2%)
Query: 105 LSELQRRVSQGREDLSDLAVEHSICPSKGEGGMLGWVRKGQLVPEFEEVAFTTPLNKVAR 164
L++++ +V G D + A +S S +GG LGW+ G+ VPEFE ++++
Sbjct: 327 LADIRNQVEAG-GDFAKFARTYSQDGSASQGGDLGWISPGETVPEFERAMNNLQDGQISQ 385
Query: 165 -CKTKFGWHLLQVLSEREA 182
+T++G+HL+QVLS REA
Sbjct: 386 PIRTEYGYHLIQVLSRREA 404
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.132 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 109,759,409
Number of Sequences: 539616
Number of extensions: 4528480
Number of successful extensions: 12482
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 294
Number of HSP's successfully gapped in prelim test: 387
Number of HSP's that attempted gapping in prelim test: 11812
Number of HSP's gapped (non-prelim): 810
length of query: 296
length of database: 191,569,459
effective HSP length: 117
effective length of query: 179
effective length of database: 128,434,387
effective search space: 22989755273
effective search space used: 22989755273
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)