Query 022496
Match_columns 296
No_of_seqs 343 out of 2390
Neff 8.8
Searched_HMMs 46136
Date Fri Mar 29 03:59:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022496.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022496hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK10770 peptidyl-prolyl cis-t 99.9 3.3E-27 7.2E-32 220.8 5.9 177 3-182 156-368 (413)
2 cd01526 RHOD_ThiF Member of th 99.9 3E-23 6.4E-28 161.8 9.9 108 186-296 8-122 (122)
3 cd01533 4RHOD_Repeat_2 Member 99.9 1.5E-22 3.3E-27 154.6 8.1 98 186-288 10-108 (109)
4 cd01518 RHOD_YceA Member of th 99.9 1E-22 2.2E-27 153.4 7.0 96 187-286 3-100 (101)
5 PF13616 Rotamase_3: PPIC-type 99.9 3.3E-22 7.1E-27 154.6 9.0 93 87-180 13-117 (117)
6 cd01523 RHOD_Lact_B Member of 99.9 3.3E-22 7.1E-27 150.4 7.6 95 188-286 1-99 (100)
7 cd01534 4RHOD_Repeat_3 Member 99.9 1.7E-21 3.6E-26 145.1 7.9 94 188-286 1-94 (95)
8 cd01528 RHOD_2 Member of the R 99.8 3.6E-21 7.7E-26 145.0 8.4 100 188-290 2-101 (101)
9 cd01527 RHOD_YgaP Member of th 99.8 9.2E-21 2E-25 142.2 10.5 96 186-290 2-97 (99)
10 KOG1530 Rhodanese-related sulf 99.8 3.3E-21 7.1E-26 145.8 7.9 103 186-292 23-134 (136)
11 TIGR02933 nifM_nitrog nitrogen 99.8 1.6E-21 3.5E-26 170.7 6.2 128 65-198 101-236 (256)
12 PRK00162 glpE thiosulfate sulf 99.8 7.3E-21 1.6E-25 145.1 8.1 99 185-291 4-102 (108)
13 PRK15441 peptidyl-prolyl cis-t 99.8 1.3E-20 2.8E-25 139.5 9.1 89 88-179 3-92 (93)
14 PLN02160 thiosulfate sulfurtra 99.8 2E-20 4.3E-25 148.3 9.9 100 186-291 15-125 (136)
15 cd01525 RHOD_Kc Member of the 99.8 3E-20 6.5E-25 140.8 9.8 96 188-286 1-104 (105)
16 cd01519 RHOD_HSP67B2 Member of 99.8 3.2E-20 6.8E-25 140.9 8.3 95 189-286 2-105 (106)
17 cd01444 GlpE_ST GlpE sulfurtra 99.8 4E-20 8.6E-25 137.7 8.4 92 188-286 2-95 (96)
18 cd01524 RHOD_Pyr_redox Member 99.8 3.8E-20 8.3E-25 136.4 7.8 88 189-286 2-89 (90)
19 cd01520 RHOD_YbbB Member of th 99.8 2.6E-20 5.6E-25 146.4 7.0 95 188-288 1-127 (128)
20 cd01447 Polysulfide_ST Polysul 99.8 7.4E-20 1.6E-24 138.0 9.1 97 188-288 1-102 (103)
21 cd01529 4RHOD_Repeats Member o 99.8 2.8E-20 6E-25 138.8 6.7 83 204-286 11-95 (96)
22 PTZ00356 peptidyl-prolyl cis-t 99.8 1.8E-19 3.9E-24 138.7 9.6 90 87-177 3-114 (115)
23 smart00450 RHOD Rhodanese Homo 99.8 1.6E-19 3.5E-24 134.5 8.9 87 204-290 3-99 (100)
24 cd01530 Cdc25 Cdc25 phosphatas 99.8 7.1E-20 1.5E-24 142.3 7.1 101 186-286 2-120 (121)
25 PRK01415 hypothetical protein; 99.8 9.6E-20 2.1E-24 156.7 8.6 102 186-291 112-215 (247)
26 PF00639 Rotamase: PPIC-type P 99.8 2.5E-19 5.3E-24 133.4 9.3 84 94-178 1-95 (95)
27 cd01522 RHOD_1 Member of the R 99.8 7.7E-20 1.7E-24 141.4 6.4 100 188-290 1-107 (117)
28 cd01521 RHOD_PspE2 Member of t 99.8 4.3E-19 9.3E-24 135.7 9.7 100 186-291 8-109 (110)
29 COG0607 PspE Rhodanese-related 99.8 4.8E-19 1E-23 135.1 9.5 90 204-295 19-109 (110)
30 PRK07878 molybdopterin biosynt 99.8 3.2E-19 7E-24 165.2 10.2 106 186-296 287-392 (392)
31 cd01449 TST_Repeat_2 Thiosulfa 99.8 3.7E-19 8E-24 137.7 9.0 94 189-286 2-117 (118)
32 TIGR02981 phageshock_pspE phag 99.8 1.4E-19 3.1E-24 135.7 6.4 81 204-287 17-97 (101)
33 cd01448 TST_Repeat_1 Thiosulfa 99.8 6.9E-19 1.5E-23 137.0 10.3 97 188-288 2-121 (122)
34 cd01532 4RHOD_Repeat_1 Member 99.8 2.5E-19 5.4E-24 132.6 7.2 80 204-286 9-91 (92)
35 PRK07411 hypothetical protein; 99.8 6E-19 1.3E-23 163.1 9.5 109 185-296 281-390 (390)
36 PRK05320 rhodanese superfamily 99.8 4.8E-19 1E-23 154.4 8.3 106 186-291 110-219 (257)
37 TIGR03865 PQQ_CXXCW PQQ-depend 99.8 7.6E-19 1.7E-23 143.2 8.7 103 185-291 35-161 (162)
38 PRK10287 thiosulfate:cyanide s 99.8 6.5E-19 1.4E-23 132.7 6.5 80 205-287 20-99 (104)
39 PF00581 Rhodanese: Rhodanese- 99.8 5.5E-19 1.2E-23 135.1 5.7 96 189-288 1-113 (113)
40 PRK00142 putative rhodanese-re 99.8 1.3E-18 2.9E-23 155.9 8.6 102 186-291 112-215 (314)
41 cd01531 Acr2p Eukaryotic arsen 99.8 6.4E-19 1.4E-23 135.4 5.6 99 186-287 2-111 (113)
42 PRK03002 prsA peptidylprolyl i 99.8 1.1E-18 2.5E-23 155.0 7.3 102 88-197 135-238 (285)
43 cd00158 RHOD Rhodanese Homolog 99.8 1.7E-18 3.6E-23 126.6 6.7 81 204-286 9-89 (89)
44 PRK04405 prsA peptidylprolyl i 99.8 3.6E-18 7.8E-23 152.4 10.0 92 88-182 143-239 (298)
45 COG2897 SseA Rhodanese-related 99.7 5.4E-18 1.2E-22 148.5 9.6 99 188-290 158-277 (285)
46 cd01535 4RHOD_Repeat_4 Member 99.7 3E-18 6.6E-23 137.2 7.3 84 204-291 10-93 (145)
47 KOG3259 Peptidyl-prolyl cis-tr 99.7 1.2E-17 2.6E-22 127.8 9.5 92 85-176 50-161 (163)
48 cd01445 TST_Repeats Thiosulfat 99.7 1.6E-17 3.4E-22 132.0 9.8 99 188-286 1-137 (138)
49 cd01443 Cdc25_Acr2p Cdc25 enzy 99.7 2.5E-18 5.4E-23 132.1 4.8 100 186-286 2-112 (113)
50 PRK10770 peptidyl-prolyl cis-t 99.7 6.9E-18 1.5E-22 158.0 8.5 115 65-182 133-258 (413)
51 PLN02723 3-mercaptopyruvate su 99.7 1.1E-17 2.4E-22 151.2 9.0 99 188-290 192-312 (320)
52 PRK02998 prsA peptidylprolyl i 99.7 2.1E-17 4.5E-22 146.7 10.7 91 88-181 133-225 (283)
53 PRK03095 prsA peptidylprolyl i 99.7 3.8E-17 8.2E-22 145.4 10.8 90 89-181 132-223 (287)
54 PRK08762 molybdopterin biosynt 99.7 1.6E-17 3.4E-22 153.5 8.5 99 186-291 3-101 (376)
55 KOG3258 Parvulin-like peptidyl 99.7 6.8E-17 1.5E-21 117.3 7.5 91 85-179 35-132 (133)
56 PRK00059 prsA peptidylprolyl i 99.7 4.7E-17 1E-21 148.4 5.6 106 87-198 194-303 (336)
57 PRK09629 bifunctional thiosulf 99.7 1.9E-16 4.1E-21 153.6 9.6 100 187-290 148-266 (610)
58 PRK11493 sseA 3-mercaptopyruva 99.7 1.7E-16 3.8E-21 141.0 8.6 96 188-288 155-272 (281)
59 TIGR03167 tRNA_sel_U_synt tRNA 99.7 7.2E-17 1.6E-21 144.2 5.6 86 205-291 2-118 (311)
60 PRK11493 sseA 3-mercaptopyruva 99.7 4.8E-16 1.1E-20 138.2 10.6 100 187-290 6-131 (281)
61 PRK12450 foldase protein PrsA; 99.6 2.2E-16 4.7E-21 141.8 5.5 102 88-197 147-256 (309)
62 PRK05597 molybdopterin biosynt 99.6 8.5E-16 1.8E-20 140.6 9.3 81 205-287 274-354 (355)
63 PRK01326 prsA foldase protein 99.6 8E-16 1.7E-20 138.3 8.2 103 88-198 144-254 (310)
64 PRK11784 tRNA 2-selenouridine 99.6 5.7E-16 1.2E-20 140.4 6.9 95 190-290 5-131 (345)
65 PRK09629 bifunctional thiosulf 99.6 2.3E-15 4.9E-20 146.1 10.8 101 187-291 10-126 (610)
66 PLN02723 3-mercaptopyruvate su 99.6 2.7E-15 5.9E-20 135.5 10.5 102 186-291 22-148 (320)
67 PRK05600 thiamine biosynthesis 99.6 3.9E-15 8.5E-20 136.6 7.9 92 187-283 272-369 (370)
68 COG1054 Predicted sulfurtransf 99.6 1.4E-15 3.1E-20 131.2 4.2 161 101-291 53-216 (308)
69 PRK10788 periplasmic folding c 99.6 7E-15 1.5E-19 144.5 9.5 94 85-182 266-361 (623)
70 cd01446 DSP_MapKP N-terminal r 99.6 1.5E-14 3.2E-19 114.2 8.2 98 188-288 2-127 (132)
71 TIGR02925 cis_trans_EpsD pepti 99.5 3.9E-14 8.3E-19 122.6 8.7 112 65-182 116-228 (232)
72 KOG2017 Molybdopterin synthase 99.5 7.1E-14 1.5E-18 122.5 6.0 108 186-296 317-427 (427)
73 PRK01269 tRNA s(4)U8 sulfurtra 99.4 1.7E-12 3.7E-17 123.4 8.3 73 204-280 406-482 (482)
74 COG2897 SseA Rhodanese-related 99.3 6.9E-12 1.5E-16 110.1 10.5 106 187-292 12-136 (285)
75 KOG3772 M-phase inducer phosph 99.3 5.4E-12 1.2E-16 110.9 6.2 108 183-290 153-278 (325)
76 COG0760 SurA Parvulin-like pep 99.2 6.9E-12 1.5E-16 112.2 2.5 93 88-183 167-266 (320)
77 KOG1529 Mercaptopyruvate sulfu 99.0 3.7E-10 8.1E-15 97.4 6.2 83 204-287 171-275 (286)
78 KOG3259 Peptidyl-prolyl cis-tr 99.0 4.6E-11 1E-15 91.9 -0.1 93 3-98 55-161 (163)
79 KOG1529 Mercaptopyruvate sulfu 98.6 1.5E-07 3.3E-12 81.5 9.2 100 188-291 7-133 (286)
80 PRK10788 periplasmic folding c 98.6 1.4E-07 3E-12 93.1 9.9 149 27-182 287-476 (623)
81 PF13616 Rotamase_3: PPIC-type 98.6 7.6E-09 1.6E-13 79.8 -0.6 92 2-94 15-112 (117)
82 PTZ00356 peptidyl-prolyl cis-t 98.4 4.6E-08 1E-12 75.1 -0.7 82 3-85 6-102 (115)
83 PF00639 Rotamase: PPIC-type P 98.4 2.3E-08 4.9E-13 74.1 -2.5 73 13-85 9-82 (95)
84 COG5105 MIH1 Mitotic inducer, 98.3 4.4E-07 9.6E-12 79.2 3.6 105 181-288 237-358 (427)
85 TIGR02933 nifM_nitrog nitrogen 98.2 2.5E-07 5.5E-12 81.1 -1.1 91 4-97 125-216 (256)
86 KOG3258 Parvulin-like peptidyl 98.2 2E-06 4.4E-11 63.0 3.7 64 32-98 61-129 (133)
87 PF13145 Rotamase_2: PPIC-type 98.1 2.4E-06 5.3E-11 65.4 2.8 88 88-182 21-111 (121)
88 PRK15441 peptidyl-prolyl cis-t 98.0 1.6E-06 3.4E-11 64.0 1.2 81 3-93 5-87 (93)
89 PRK04405 prsA peptidylprolyl i 97.8 9.3E-06 2E-10 72.8 1.9 86 3-97 145-235 (298)
90 PRK03095 prsA peptidylprolyl i 97.7 1.4E-05 3.1E-10 71.3 1.6 84 3-95 133-218 (287)
91 PRK02998 prsA peptidylprolyl i 97.6 1.2E-05 2.5E-10 71.7 -0.0 84 3-97 135-219 (283)
92 PRK03002 prsA peptidylprolyl i 97.5 2.3E-05 5.1E-10 69.8 0.4 74 3-85 137-211 (285)
93 COG2603 Predicted ATPase [Gene 96.5 0.00071 1.5E-08 59.0 0.1 81 205-286 15-127 (334)
94 PRK12450 foldase protein PrsA; 96.3 0.0019 4.1E-08 58.3 1.9 56 26-85 164-222 (309)
95 PRK00059 prsA peptidylprolyl i 96.3 0.0041 8.9E-08 56.7 3.8 72 24-96 210-285 (336)
96 PRK01326 prsA foldase protein 96.2 0.0041 9E-08 56.1 3.6 56 27-86 162-220 (310)
97 COG0760 SurA Parvulin-like pep 95.4 0.0072 1.6E-07 53.6 1.5 79 3-85 169-248 (320)
98 TIGR02925 cis_trans_EpsD pepti 94.5 0.011 2.4E-07 50.9 0.1 83 3-95 139-222 (232)
99 PRK00142 putative rhodanese-re 92.2 0.0051 1.1E-07 55.6 -5.9 82 189-276 17-105 (314)
100 KOG1093 Predicted protein kina 91.3 0.054 1.2E-06 51.7 -0.3 81 205-285 634-718 (725)
101 PF04273 DUF442: Putative phos 87.2 0.73 1.6E-05 34.9 3.3 76 186-267 13-106 (110)
102 KOG1717 Dual specificity phosp 84.9 0.79 1.7E-05 39.9 2.7 95 188-291 6-127 (343)
103 TIGR01244 conserved hypothetic 84.8 1 2.2E-05 35.3 3.2 81 186-272 13-112 (135)
104 PF09992 DUF2233: Predicted pe 79.4 2.1 4.6E-05 34.7 3.3 40 245-284 98-142 (170)
105 PF01451 LMWPc: Low molecular 75.6 2.3 4.9E-05 33.2 2.4 36 250-285 1-41 (138)
106 PF05706 CDKN3: Cyclin-depende 75.2 2.1 4.5E-05 34.8 2.0 29 243-271 129-159 (168)
107 PF03853 YjeF_N: YjeF-related 75.1 5.2 0.00011 32.6 4.4 32 245-277 23-57 (169)
108 TIGR03167 tRNA_sel_U_synt tRNA 73.3 1.8 3.8E-05 39.2 1.3 70 186-261 136-210 (311)
109 KOG3636 Uncharacterized conser 73.1 5.3 0.00011 37.5 4.3 81 205-286 326-427 (669)
110 smart00195 DSPc Dual specifici 70.5 6.2 0.00013 30.5 3.8 29 245-273 76-107 (138)
111 PLN03050 pyridoxine (pyridoxam 69.7 7.1 0.00015 34.0 4.2 31 247-278 60-93 (246)
112 COG2453 CDC14 Predicted protei 69.6 5 0.00011 33.1 3.1 30 244-273 102-134 (180)
113 COG3453 Uncharacterized protei 66.0 7.7 0.00017 29.7 3.2 22 246-267 86-107 (130)
114 PF00782 DSPc: Dual specificit 63.3 10 0.00022 29.0 3.6 29 245-273 71-102 (133)
115 smart00226 LMWPc Low molecular 62.5 8.6 0.00019 30.0 3.1 37 250-286 1-38 (140)
116 PTZ00393 protein tyrosine phos 62.4 9.5 0.00021 33.0 3.5 29 245-273 168-198 (241)
117 TIGR00853 pts-lac PTS system, 62.0 11 0.00023 27.6 3.3 37 247-284 3-43 (95)
118 COG0062 Uncharacterized conser 61.6 14 0.0003 31.2 4.2 31 247-278 49-82 (203)
119 PTZ00242 protein tyrosine phos 61.3 11 0.00024 30.6 3.6 27 245-271 96-124 (166)
120 cd00127 DSPc Dual specificity 60.9 12 0.00026 28.7 3.7 68 206-273 29-110 (139)
121 PRK10126 tyrosine phosphatase; 60.6 12 0.00026 29.6 3.7 38 248-286 3-41 (147)
122 TIGR02689 ars_reduc_gluta arse 60.5 15 0.00032 28.2 4.1 37 248-284 1-38 (126)
123 PRK09590 celB cellobiose phosp 58.7 11 0.00024 28.1 2.9 37 248-285 2-42 (104)
124 PRK11391 etp phosphotyrosine-p 57.3 15 0.00032 29.1 3.6 38 248-286 3-41 (144)
125 PLN03049 pyridoxine (pyridoxam 57.1 14 0.0003 35.4 4.0 31 247-278 59-92 (462)
126 cd00115 LMWPc Substituted upda 56.8 11 0.00024 29.4 2.9 37 249-285 2-40 (141)
127 cd05565 PTS_IIB_lactose PTS_II 56.4 12 0.00026 27.6 2.8 37 249-286 2-42 (99)
128 PLN02918 pyridoxine (pyridoxam 54.2 17 0.00037 35.4 4.1 31 247-278 135-168 (544)
129 PRK10310 PTS system galactitol 53.9 29 0.00063 25.2 4.4 37 249-286 4-45 (94)
130 PRK10565 putative carbohydrate 53.7 19 0.00041 34.9 4.4 33 245-278 58-93 (508)
131 PRK13530 arsenate reductase; P 51.1 25 0.00055 27.3 4.0 37 247-283 3-40 (133)
132 cd05564 PTS_IIB_chitobiose_lic 50.9 17 0.00037 26.5 2.8 36 249-285 1-40 (96)
133 cd05567 PTS_IIB_mannitol PTS_I 50.7 19 0.00041 25.6 3.0 37 248-285 1-42 (87)
134 TIGR00197 yjeF_nterm yjeF N-te 49.3 29 0.00064 29.2 4.4 33 245-278 43-78 (205)
135 PLN02727 NAD kinase 48.9 20 0.00042 37.2 3.7 78 186-268 267-364 (986)
136 KOG0330 ATP-dependent RNA heli 48.8 25 0.00055 32.7 4.1 38 246-284 299-336 (476)
137 PF02302 PTS_IIB: PTS system, 46.4 25 0.00055 24.8 3.1 32 249-281 1-37 (90)
138 PRK10499 PTS system N,N'-diace 46.3 27 0.00058 26.1 3.3 27 247-273 3-33 (106)
139 COG4822 CbiK Cobalamin biosynt 46.3 33 0.00072 29.2 4.1 35 244-278 134-173 (265)
140 cd00133 PTS_IIB PTS_IIB: subun 46.2 22 0.00049 24.2 2.8 22 249-270 1-23 (84)
141 COG2519 GCD14 tRNA(1-methylade 44.9 23 0.0005 30.9 3.1 35 243-277 184-218 (256)
142 PF03162 Y_phosphatase2: Tyros 44.9 19 0.00042 29.2 2.5 29 245-273 89-119 (164)
143 smart00012 PTPc_DSPc Protein t 42.3 31 0.00066 24.6 3.1 17 246-262 38-55 (105)
144 smart00404 PTPc_motif Protein 42.3 31 0.00066 24.6 3.1 17 246-262 38-55 (105)
145 COG0394 Wzb Protein-tyrosine-p 41.4 33 0.00072 27.0 3.3 38 248-285 3-41 (139)
146 COG2518 Pcm Protein-L-isoaspar 40.9 27 0.00059 29.6 2.8 29 260-288 107-136 (209)
147 TIGR02691 arsC_pI258_fam arsen 38.6 40 0.00087 26.0 3.4 35 250-284 1-36 (129)
148 cd00079 HELICc Helicase superf 38.5 49 0.0011 24.5 3.9 36 246-282 27-62 (131)
149 cd05563 PTS_IIB_ascorbate PTS_ 36.6 40 0.00086 23.6 2.8 21 249-269 1-22 (86)
150 PRK13696 hypothetical protein; 34.5 65 0.0014 21.6 3.3 30 93-127 4-33 (62)
151 PF13399 LytR_C: LytR cell env 33.9 75 0.0016 22.4 4.0 30 246-275 2-33 (90)
152 KOG0333 U5 snRNP-like RNA heli 33.6 52 0.0011 32.0 3.7 36 246-282 516-551 (673)
153 TIGR00201 comF comF family pro 33.0 66 0.0014 26.5 4.0 33 246-278 151-186 (190)
154 PF02590 SPOUT_MTase: Predicte 32.7 43 0.00094 26.9 2.7 47 241-287 61-112 (155)
155 PRK04837 ATP-dependent RNA hel 32.5 60 0.0013 30.4 4.1 36 247-283 255-290 (423)
156 COG5350 Predicted protein tyro 32.1 23 0.0005 28.4 1.0 24 243-266 89-113 (172)
157 PF13350 Y_phosphatase3: Tyros 32.0 53 0.0011 26.3 3.2 27 247-273 124-152 (164)
158 COG0162 TyrS Tyrosyl-tRNA synt 31.9 36 0.00078 31.9 2.4 40 249-289 32-81 (401)
159 PF04122 CW_binding_2: Putativ 31.8 65 0.0014 22.9 3.4 35 247-284 50-84 (92)
160 COG3414 SgaB Phosphotransferas 31.2 72 0.0016 23.3 3.4 26 248-273 2-32 (93)
161 PF00899 ThiF: ThiF family; I 31.0 79 0.0017 24.2 4.0 39 250-288 4-42 (135)
162 cd05566 PTS_IIB_galactitol PTS 30.8 58 0.0012 22.9 2.9 25 248-272 1-30 (89)
163 PF05225 HTH_psq: helix-turn-h 30.4 1.1E+02 0.0023 18.9 3.7 27 104-130 4-30 (45)
164 TIGR00614 recQ_fam ATP-depende 30.0 56 0.0012 31.2 3.5 37 246-283 225-261 (470)
165 PF01488 Shikimate_DH: Shikima 29.6 84 0.0018 24.2 3.9 35 246-281 11-45 (135)
166 COG1440 CelA Phosphotransferas 29.6 63 0.0014 24.0 2.9 23 248-270 2-24 (102)
167 cd05568 PTS_IIB_bgl_like PTS_I 28.9 70 0.0015 22.0 3.0 22 249-270 2-24 (85)
168 PRK01565 thiamine biosynthesis 28.8 91 0.002 29.1 4.6 30 246-276 175-204 (394)
169 PRK11057 ATP-dependent DNA hel 28.6 66 0.0014 31.9 3.8 37 246-283 235-271 (607)
170 COG0513 SrmB Superfamily II DN 28.2 62 0.0014 31.4 3.5 34 249-283 275-308 (513)
171 PRK11776 ATP-dependent RNA hel 28.1 66 0.0014 30.5 3.6 36 247-283 242-277 (460)
172 PF00156 Pribosyltran: Phospho 28.0 94 0.002 23.1 3.9 33 245-277 86-121 (125)
173 PRK04923 ribose-phosphate pyro 28.0 90 0.002 28.3 4.3 33 246-278 216-251 (319)
174 PLN02541 uracil phosphoribosyl 27.8 1.1E+02 0.0024 26.6 4.6 32 245-276 155-191 (244)
175 PRK11192 ATP-dependent RNA hel 26.9 91 0.002 29.2 4.3 37 246-283 244-280 (434)
176 PRK04537 ATP-dependent RNA hel 26.9 77 0.0017 31.3 3.9 37 246-283 256-292 (572)
177 COG1986 Inosine/xanthosine tri 26.9 87 0.0019 25.7 3.5 42 105-147 109-151 (175)
178 PRK07199 phosphoribosylpyropho 26.3 94 0.002 27.9 4.0 33 246-278 210-245 (301)
179 TIGR03372 putres_am_tran putre 26.2 85 0.0018 29.9 3.9 40 247-286 133-177 (442)
180 PF00289 CPSase_L_chain: Carba 26.2 67 0.0014 24.1 2.6 28 251-278 5-32 (110)
181 TIGR01389 recQ ATP-dependent D 26.0 74 0.0016 31.4 3.6 36 247-283 224-259 (591)
182 COG0514 RecQ Superfamily II DN 25.9 74 0.0016 31.5 3.5 37 246-283 229-265 (590)
183 TIGR01587 cas3_core CRISPR-ass 25.5 77 0.0017 28.7 3.5 38 245-282 220-258 (358)
184 TIGR00342 thiazole biosynthesi 25.4 1.1E+02 0.0024 28.2 4.5 30 246-276 171-200 (371)
185 PRK10590 ATP-dependent RNA hel 24.9 82 0.0018 29.9 3.6 37 246-283 244-280 (456)
186 PLN02482 glutamate-1-semialdeh 24.7 71 0.0015 30.7 3.1 38 249-286 156-195 (474)
187 PF13344 Hydrolase_6: Haloacid 24.2 1.2E+02 0.0025 22.2 3.6 28 246-273 29-57 (101)
188 PRK07046 aminotransferase; Val 23.8 68 0.0015 30.6 2.8 37 250-286 132-170 (453)
189 TIGR00258 inosine/xanthosine t 23.8 1.2E+02 0.0026 24.6 3.8 42 105-147 103-145 (163)
190 PF02254 TrkA_N: TrkA-N domain 23.7 1.2E+02 0.0027 22.1 3.7 29 251-280 1-29 (116)
191 PRK09162 hypoxanthine-guanine 23.6 1.1E+02 0.0024 25.0 3.7 34 246-279 96-132 (181)
192 PF14572 Pribosyl_synth: Phosp 23.4 1.1E+02 0.0025 25.3 3.6 33 246-278 82-117 (184)
193 PRK04192 V-type ATP synthase s 23.3 1.2E+02 0.0026 29.9 4.4 30 259-289 311-340 (586)
194 PRK03941 NTPase; Reviewed 23.2 1.2E+02 0.0025 25.0 3.7 42 105-147 108-150 (174)
195 cd00047 PTPc Protein tyrosine 23.2 65 0.0014 27.2 2.3 17 246-262 165-182 (231)
196 PF02879 PGM_PMM_II: Phosphogl 23.2 1.3E+02 0.0029 21.7 3.8 33 247-280 21-53 (104)
197 KOG2585 Uncharacterized conser 23.2 1E+02 0.0022 29.2 3.6 30 249-278 268-300 (453)
198 PRK02458 ribose-phosphate pyro 23.1 1.1E+02 0.0024 27.8 3.9 33 246-278 217-252 (323)
199 PTZ00150 phosphoglucomutase-2- 23.1 1E+02 0.0023 30.4 4.0 31 247-277 228-258 (584)
200 PTZ00110 helicase; Provisional 23.0 1E+02 0.0022 30.2 3.9 37 246-283 376-412 (545)
201 cd01134 V_A-ATPase_A V/A-type 22.9 1.4E+02 0.003 27.7 4.4 29 260-289 242-270 (369)
202 COG0462 PrsA Phosphoribosylpyr 22.9 1.4E+02 0.0031 27.0 4.4 33 246-278 213-248 (314)
203 COG1040 ComFC Predicted amidop 22.8 1.5E+02 0.0034 25.3 4.6 31 248-278 185-218 (225)
204 PRK08762 molybdopterin biosynt 22.7 92 0.002 28.8 3.4 41 246-287 134-174 (376)
205 PF00218 IGPS: Indole-3-glycer 22.6 33 0.00071 30.1 0.4 68 206-275 160-235 (254)
206 COG2185 Sbm Methylmalonyl-CoA 22.5 1.4E+02 0.003 23.7 3.8 38 245-282 61-102 (143)
207 PRK06918 4-aminobutyrate amino 22.5 85 0.0019 29.8 3.2 38 249-286 116-155 (451)
208 PF00102 Y_phosphatase: Protei 22.4 97 0.0021 25.8 3.3 17 245-261 168-185 (235)
209 KOG0332 ATP-dependent RNA heli 22.4 94 0.002 29.0 3.2 34 250-284 333-366 (477)
210 PRK00103 rRNA large subunit me 21.7 1E+02 0.0023 24.8 3.1 47 242-288 62-113 (157)
211 PRK06781 amidophosphoribosyltr 21.5 1.4E+02 0.0029 28.8 4.3 36 245-280 346-384 (471)
212 PLN02460 indole-3-glycerol-pho 21.4 98 0.0021 28.3 3.2 68 207-275 233-314 (338)
213 PRK05769 4-aminobutyrate amino 20.9 96 0.0021 29.4 3.2 38 249-286 116-155 (441)
214 PRK01269 tRNA s(4)U8 sulfurtra 20.7 1.4E+02 0.0029 28.8 4.2 38 246-284 176-215 (482)
215 PRK08117 4-aminobutyrate amino 20.6 1.2E+02 0.0025 28.6 3.7 40 247-286 102-143 (433)
216 PRK05074 inosine/xanthosine tr 20.2 1.5E+02 0.0032 24.3 3.7 42 105-147 108-150 (173)
No 1
>PRK10770 peptidyl-prolyl cis-trans isomerase SurA; Provisional
Probab=99.93 E-value=3.3e-27 Score=220.84 Aligned_cols=177 Identities=17% Similarity=0.222 Sum_probs=150.4
Q ss_pred cccccCCch----hhhhccccccccccccCCccccccCCchhH-HhhhhccCCCCCCCceeeeecccccCchhhcccccC
Q 022496 3 LRASQLASP----VLCAITQSLIPTLNLSSSSSLSIFQKPASF-ASFYKSLNPASNSNSFHIHIISRSFTSPKAASFSSG 77 (296)
Q Consensus 3 ~~~~~~~~~----~~~~~~~~~~~~~~~~r~~~~~~~~~f~~l-~~~s~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~~ 77 (296)
++.+||+-+ .+.+.+.......+.++..+..|. .|+.+ +.||+++. +.+||++||+..+.+.++|+.+.|.++
T Consensus 156 ~~~~~I~i~~~~~~s~~~~~~~~~~a~~l~~~l~~g~-~F~~lA~~yS~~~~-a~~gGdlg~~~~~~l~~~~~~~~~~l~ 233 (413)
T PRK10770 156 LNLSHILIPLPENPTQDQVDEAESQARSIVDQARNGA-DFGKLAIAYSADQQ-ALKGGQMGWGRIQELPGLFAQALSTAK 233 (413)
T ss_pred EEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHCCC-CHHHHHHHhCCCcc-cccCCcCCccccccccHHHHHHHHhCC
Confidence 355677643 234445555566677777777774 89999 99999985 889999999999999999999999999
Q ss_pred CCCCCCC--------------CC-------CceEEEeeEeeccc-------hHHHHHHHHHHHhcCC-ccHHHHHHhhCC
Q 022496 78 TEGSSPG--------------GG-------DREILVQHLLVKED-------DLNLLSELQRRVSQGR-EDLSDLAVEHSI 128 (296)
Q Consensus 78 ~~~i~~~--------------~~-------~~~~~~~~Il~~~~-------~~~~a~~i~~~l~~~g-~~F~~la~~~S~ 128 (296)
+|+|+.| .. ..+++++||++++. +++++++|+++|. +| .+|+++|++||+
T Consensus 234 ~G~is~Pi~t~~GyhIikl~~~~~~~~~~~~~e~~~~hIli~~~~~~~~~~a~~~~~~i~~~i~-~g~~~F~~~A~~~S~ 312 (413)
T PRK10770 234 KGDIVGPIRSGVGFHILKVNDLRGESQNISVTEVHARHILLKPSPIMTDEQARAKLEQIAADIK-SGKTTFAAAAKEFSQ 312 (413)
T ss_pred CCCCCCcEECCCceEEEEEeeeccccccchHHhhhhhheEECCCCCCCHHHHHHHHHHHHHHHH-cCcccHHHHHHHhCC
Confidence 9999988 11 23689999999853 5678999999996 67 599999999999
Q ss_pred CC-cccCCcccccccCCCCcHHHHHHHhcCCCCcee-ceeecCcceEEEeehhhhh
Q 022496 129 CP-SKGEGGMLGWVRKGQLVPEFEEVAFTTPLNKVA-RCKTKFGWHLLQVLSEREA 182 (296)
Q Consensus 129 d~-~~~~gG~lg~~~~~~l~~~~~~~~~~l~~G~vs-pv~~~~G~~Ii~v~~~~~~ 182 (296)
|+ ++.+||+|||+..+.++|+|..++++|++|++| |+.|++|||||++++.+..
T Consensus 313 d~~s~~~gG~lg~~~~~~~~~~~~~~~~~l~~GeiS~pv~t~~g~~ii~v~~~~~~ 368 (413)
T PRK10770 313 DPGSANQGGDLGWATPDIFDPAFRDALMRLNKGQISAPVHSSFGWHLIELLDTRQV 368 (413)
T ss_pred CCChHhhCCcCCccCccccCHHHHHHHHcCCCCCcCCcEEcCCeEEEEEEeecccC
Confidence 97 889999999999999999999999999999999 8999999999999987654
No 2
>cd01526 RHOD_ThiF Member of the Rhodanese Homology Domain superfamily. This CD includes several putative molybdopterin synthase sulfurylases including the molybdenum cofactor biosynthetic protein (CnxF) of Aspergillus nidulans and the molybdenum cofactor synthesis protein 3 (MOCS3) of Homo sapiens. These rhodanese-like domains are found C-terminal of the ThiF and MoeZ_MoeB domains.
Probab=99.89 E-value=3e-23 Score=161.80 Aligned_cols=108 Identities=29% Similarity=0.507 Sum_probs=93.8
Q ss_pred cCCCHHHHHHHhcCCCCCCCcEEEecCChHHHHhhCCCCceecccccccCCCCCcc------CCCCCCCcEEEEeCCChh
Q 022496 186 QDIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDIT------VKFDPQKDTYVMCHHGMR 259 (296)
Q Consensus 186 ~~is~~ev~~~L~~~~~~~~~~llDvR~~~ey~~ghIpgA~~ip~~~l~~~~~~~~------~~~~~~~~iv~~C~~G~r 259 (296)
..++.+++.+.+.+. .+..+||+|++.||..||||||+|+|+..+..+...+. ..++++++||+||++|.|
T Consensus 8 ~~is~~el~~~~~~~---~~~~ivDvR~~~e~~~~hIpgai~ip~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~C~~G~r 84 (122)
T cd01526 8 ERVSVKDYKNILQAG---KKHVLLDVRPKVHFEICRLPEAINIPLSELLSKAAELKSLQELPLDNDKDSPIYVVCRRGND 84 (122)
T ss_pred cccCHHHHHHHHhCC---CCeEEEEcCCHHHhhcccCCCCeEccHHHHhhhhhhhhhhhhcccccCCCCcEEEECCCCCc
Confidence 457888998888653 36789999999999999999999999998866443321 124789999999999999
Q ss_pred HHHHHHHHHHcCC-CceEEccchHHHhhhccCCCCCCC
Q 022496 260 SLQVAQWLQTQGF-RRVFNVSGGIHAYATKVDPSIPTY 296 (296)
Q Consensus 260 s~~aa~~L~~~G~-~~v~~l~GG~~~W~~~~~~~~~~~ 296 (296)
|..++..|+..|| ++|++|+||+.+|..++++.+|+|
T Consensus 85 s~~aa~~L~~~G~~~~v~~l~GG~~~W~~~~~~~~~~~ 122 (122)
T cd01526 85 SQTAVRKLKELGLERFVRDIIGGLKAWADKVDPTFPLY 122 (122)
T ss_pred HHHHHHHHHHcCCccceeeecchHHHHHHHhCccCCCC
Confidence 9999999999999 799999999999999999999998
No 3
>cd01533 4RHOD_Repeat_2 Member of the Rhodanese Homology Domain superfamily, repeat 2. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 2nd repeat which does contain the putative catalytic Cys residue.
Probab=99.87 E-value=1.5e-22 Score=154.61 Aligned_cols=98 Identities=21% Similarity=0.252 Sum_probs=83.9
Q ss_pred cCCCHHHHHHHhcCCCCCCCcEEEecCChHHHHhhCCCCceecccccccCCCCCccCCCCCCCcEEEEeCCChhHHHHHH
Q 022496 186 QDIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKFDPQKDTYVMCHHGMRSLQVAQ 265 (296)
Q Consensus 186 ~~is~~ev~~~L~~~~~~~~~~llDvR~~~ey~~ghIpgA~~ip~~~l~~~~~~~~~~~~~~~~iv~~C~~G~rs~~aa~ 265 (296)
..++.+++.+.+.++ .+..+||||++.||..||||||+|+|+..|......+. .+++++|||||.+|.||..++.
T Consensus 10 ~~i~~~~l~~~~~~~---~~~~liDvR~~~e~~~ghIpgainip~~~l~~~~~~l~--~~~~~~ivv~C~~G~rs~~a~~ 84 (109)
T cd01533 10 PSVSADELAALQARG---APLVVLDGRRFDEYRKMTIPGSVSCPGAELVLRVGELA--PDPRTPIVVNCAGRTRSIIGAQ 84 (109)
T ss_pred CcCCHHHHHHHHhcC---CCcEEEeCCCHHHHhcCcCCCceeCCHHHHHHHHHhcC--CCCCCeEEEECCCCchHHHHHH
Confidence 568888999888753 35689999999999999999999999988765433332 2568899999999999999999
Q ss_pred HHHHcCCCc-eEEccchHHHhhhc
Q 022496 266 WLQTQGFRR-VFNVSGGIHAYATK 288 (296)
Q Consensus 266 ~L~~~G~~~-v~~l~GG~~~W~~~ 288 (296)
.|+.+||+| |++|+||+.+|...
T Consensus 85 ~L~~~G~~~~v~~l~gG~~~W~~~ 108 (109)
T cd01533 85 SLINAGLPNPVAALRNGTQGWTLA 108 (109)
T ss_pred HHHHCCCCcceeEecCCHHHHHhc
Confidence 999999998 99999999999864
No 4
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=99.87 E-value=1e-22 Score=153.41 Aligned_cols=96 Identities=24% Similarity=0.465 Sum_probs=81.2
Q ss_pred CCCHHHHHHHhcCCCCCCCcEEEecCChHHHHhhCCCCceecccccccCCCCCcc--CCCCCCCcEEEEeCCChhHHHHH
Q 022496 187 DIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDIT--VKFDPQKDTYVMCHHGMRSLQVA 264 (296)
Q Consensus 187 ~is~~ev~~~L~~~~~~~~~~llDvR~~~ey~~ghIpgA~~ip~~~l~~~~~~~~--~~~~~~~~iv~~C~~G~rs~~aa 264 (296)
.++++++.+.+.+ ++..+||||++.||..||||||+|+|+..+......+. ..++++++|||||.+|.||..++
T Consensus 3 ~is~~~l~~~~~~----~~~~iiDvR~~~e~~~ghi~gA~~ip~~~~~~~~~~~~~~~~~~~~~~ivvyC~~G~rs~~a~ 78 (101)
T cd01518 3 YLSPAEWNELLED----PEVVLLDVRNDYEYDIGHFKGAVNPDVDTFREFPFWLDENLDLLKGKKVLMYCTGGIRCEKAS 78 (101)
T ss_pred cCCHHHHHHHHcC----CCEEEEEcCChhhhhcCEeccccCCCcccHhHhHHHHHhhhhhcCCCEEEEECCCchhHHHHH
Confidence 4778888888864 36789999999999999999999999987654211111 12378999999999999999999
Q ss_pred HHHHHcCCCceEEccchHHHhh
Q 022496 265 QWLQTQGFRRVFNVSGGIHAYA 286 (296)
Q Consensus 265 ~~L~~~G~~~v~~l~GG~~~W~ 286 (296)
.+|+.+||+||++|+||+.+|.
T Consensus 79 ~~L~~~G~~~v~~l~GG~~~W~ 100 (101)
T cd01518 79 AYLKERGFKNVYQLKGGILKYL 100 (101)
T ss_pred HHHHHhCCcceeeechhHHHHh
Confidence 9999999999999999999996
No 5
>PF13616 Rotamase_3: PPIC-type PPIASE domain; PDB: 3RFW_A 3UI5_A 3UI4_A 1FJD_A 1EQ3_A 1ZK6_A.
Probab=99.87 E-value=3.3e-22 Score=154.56 Aligned_cols=93 Identities=29% Similarity=0.553 Sum_probs=83.1
Q ss_pred CceEEEeeEeeccc---------hHHHHHHHHHHHhcCCccHHHHHHhhCCCC-cccCCccccccc-CCCCcHHHHHHHh
Q 022496 87 DREILVQHLLVKED---------DLNLLSELQRRVSQGREDLSDLAVEHSICP-SKGEGGMLGWVR-KGQLVPEFEEVAF 155 (296)
Q Consensus 87 ~~~~~~~~Il~~~~---------~~~~a~~i~~~l~~~g~~F~~la~~~S~d~-~~~~gG~lg~~~-~~~l~~~~~~~~~ 155 (296)
+++++++||+++.+ ++++|++|+++|+ +|++|++||++||+|+ ++.+||++||++ .+.++++|.+++|
T Consensus 13 ~~~v~~~~I~i~~~~~~~~~~~~ak~~a~~i~~~l~-~G~dF~~lA~~yS~D~~s~~~gG~lgw~~~~~~~~~~f~~~~~ 91 (117)
T PF13616_consen 13 PDEVKVSHILIPVPDASSRSKEEAKKKADSILKQLK-SGADFAELAKKYSQDPSSAENGGDLGWMSEPSQLPPEFEEAAF 91 (117)
T ss_dssp --EEEEEEEEESS-----------HHHHHHHHHHHH-CTCCHHHHHHHHTSSCGTGGGTTEEEEEETTTSSSCHHHHHHH
T ss_pred cCeEEEEEEEEeccccccchhHHHHHHHHHHHHHHH-CCCCHHHHHHHhCCCCcccccCCccccccCCccccHHHHHHHH
Confidence 36899999999963 4889999999996 9999999999999998 699999999999 9999999999999
Q ss_pred cCCCCcee-ceeecCcceEEEeehhh
Q 022496 156 TTPLNKVA-RCKTKFGWHLLQVLSER 180 (296)
Q Consensus 156 ~l~~G~vs-pv~~~~G~~Ii~v~~~~ 180 (296)
.+++|++| |++++.|||||++.+++
T Consensus 92 ~l~~G~is~~v~s~~G~hIikv~drk 117 (117)
T PF13616_consen 92 SLKVGEISGPVESPNGYHIIKVTDRK 117 (117)
T ss_dssp HS-TTECTCEEEETTEEEEEEEEEE-
T ss_pred cCCCCCCCCeEEECCEEEEEEEEeeC
Confidence 99999998 89999999999998753
No 6
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=99.87 E-value=3.3e-22 Score=150.37 Aligned_cols=95 Identities=21% Similarity=0.305 Sum_probs=80.7
Q ss_pred CCHHHHHHHhcCCCCCCCcEEEecCChHHHHhhCCCCceecccccccCCC----CCccCCCCCCCcEEEEeCCChhHHHH
Q 022496 188 IQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWG----PDITVKFDPQKDTYVMCHHGMRSLQV 263 (296)
Q Consensus 188 is~~ev~~~L~~~~~~~~~~llDvR~~~ey~~ghIpgA~~ip~~~l~~~~----~~~~~~~~~~~~iv~~C~~G~rs~~a 263 (296)
++++++.+++.++ ++.++||||++.||..||||||+|+|+..+.... ......++++++|||||.+|.||..+
T Consensus 1 is~~el~~~l~~~---~~~~liDvR~~~e~~~ghi~ga~~ip~~~~~~~~~~~~~~~~~~~~~~~~ivv~C~~G~rs~~a 77 (100)
T cd01523 1 LDPEDLYARLLAG---QPLFILDVRNESDYERWKIDGENNTPYFDPYFDFLEIEEDILDQLPDDQEVTVICAKEGSSQFV 77 (100)
T ss_pred CCHHHHHHHHHcC---CCcEEEEeCCHHHHhhcccCCCcccccccchHHHHHhhHHHHhhCCCCCeEEEEcCCCCcHHHH
Confidence 4567888888764 3678999999999999999999999998775321 12234568899999999999999999
Q ss_pred HHHHHHcCCCceEEccchHHHhh
Q 022496 264 AQWLQTQGFRRVFNVSGGIHAYA 286 (296)
Q Consensus 264 a~~L~~~G~~~v~~l~GG~~~W~ 286 (296)
+..|+.+||+ +++|.||+.+|.
T Consensus 78 a~~L~~~G~~-~~~l~GG~~~W~ 99 (100)
T cd01523 78 AELLAERGYD-VDYLAGGMKAWS 99 (100)
T ss_pred HHHHHHcCce-eEEeCCcHHhhc
Confidence 9999999998 999999999996
No 7
>cd01534 4RHOD_Repeat_3 Member of the Rhodanese Homology Domain superfamily, repeat 3. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 3rd repeat which does not contain the putative catalytic Cys residue.
Probab=99.85 E-value=1.7e-21 Score=145.14 Aligned_cols=94 Identities=27% Similarity=0.395 Sum_probs=78.1
Q ss_pred CCHHHHHHHhcCCCCCCCcEEEecCChHHHHhhCCCCceecccccccCCCCCccCCCCCCCcEEEEeCCChhHHHHHHHH
Q 022496 188 IQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKFDPQKDTYVMCHHGMRSLQVAQWL 267 (296)
Q Consensus 188 is~~ev~~~L~~~~~~~~~~llDvR~~~ey~~ghIpgA~~ip~~~l~~~~~~~~~~~~~~~~iv~~C~~G~rs~~aa~~L 267 (296)
++++++.+++.++. +...+||||++.||..||||||+|+|+..+......+.. .++++||+||.+|.||..++.+|
T Consensus 1 is~~~l~~~~~~~~--~~~~liDvR~~~e~~~ghipga~~ip~~~l~~~~~~~~~--~~~~~iv~~c~~G~rs~~aa~~L 76 (95)
T cd01534 1 IGAAELARWAAEGD--RTVYRFDVRTPEEYEAGHLPGFRHTPGGQLVQETDHFAP--VRGARIVLADDDGVRADMTASWL 76 (95)
T ss_pred CCHHHHHHHHHcCC--CCeEEEECCCHHHHHhCCCCCcEeCCHHHHHHHHHHhcc--cCCCeEEEECCCCChHHHHHHHH
Confidence 45678888886531 246799999999999999999999999887654332322 35789999999999999999999
Q ss_pred HHcCCCceEEccchHHHhh
Q 022496 268 QTQGFRRVFNVSGGIHAYA 286 (296)
Q Consensus 268 ~~~G~~~v~~l~GG~~~W~ 286 (296)
..+||+ |++|+||+.+|.
T Consensus 77 ~~~G~~-v~~l~GG~~~W~ 94 (95)
T cd01534 77 AQMGWE-VYVLEGGLAAAL 94 (95)
T ss_pred HHcCCE-EEEecCcHHHhc
Confidence 999998 999999999996
No 8
>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2. Subgroup 2 includes uncharacterized putative rhodanese-related domains.
Probab=99.85 E-value=3.6e-21 Score=144.99 Aligned_cols=100 Identities=47% Similarity=0.821 Sum_probs=83.5
Q ss_pred CCHHHHHHHhcCCCCCCCcEEEecCChHHHHhhCCCCceecccccccCCCCCccCCCCCCCcEEEEeCCChhHHHHHHHH
Q 022496 188 IQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKFDPQKDTYVMCHHGMRSLQVAQWL 267 (296)
Q Consensus 188 is~~ev~~~L~~~~~~~~~~llDvR~~~ey~~ghIpgA~~ip~~~l~~~~~~~~~~~~~~~~iv~~C~~G~rs~~aa~~L 267 (296)
+++.++.+.+... .....+||+|++.||..+|||||+|+|+..+......+.. .+++++||+||.+|.||..++.+|
T Consensus 2 i~~~~l~~~~~~~--~~~~~iiDvR~~~e~~~~hI~ga~~ip~~~~~~~~~~~~~-~~~~~~vv~~c~~g~rs~~~~~~l 78 (101)
T cd01528 2 ISVAELAEWLADE--REEPVLIDVREPEELEIAFLPGFLHLPMSEIPERSKELDS-DNPDKDIVVLCHHGGRSMQVAQWL 78 (101)
T ss_pred CCHHHHHHHHhcC--CCCCEEEECCCHHHHhcCcCCCCEecCHHHHHHHHHHhcc-cCCCCeEEEEeCCCchHHHHHHHH
Confidence 5677888888753 1247899999999999999999999999887654333221 246899999999999999999999
Q ss_pred HHcCCCceEEccchHHHhhhccC
Q 022496 268 QTQGFRRVFNVSGGIHAYATKVD 290 (296)
Q Consensus 268 ~~~G~~~v~~l~GG~~~W~~~~~ 290 (296)
.+.||++|++|+||+.+|...++
T Consensus 79 ~~~G~~~v~~l~GG~~~w~~~~~ 101 (101)
T cd01528 79 LRQGFENVYNLQGGIDAWSLEVD 101 (101)
T ss_pred HHcCCccEEEecCCHHHHhhhcC
Confidence 99999999999999999987653
No 9
>cd01527 RHOD_YgaP Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YgaP, and similar uncharacterized putative rhodanese-related sulfurtransferases.
Probab=99.85 E-value=9.2e-21 Score=142.16 Aligned_cols=96 Identities=27% Similarity=0.475 Sum_probs=84.0
Q ss_pred cCCCHHHHHHHhcCCCCCCCcEEEecCChHHHHhhCCCCceecccccccCCCCCccCCCCCCCcEEEEeCCChhHHHHHH
Q 022496 186 QDIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKFDPQKDTYVMCHHGMRSLQVAQ 265 (296)
Q Consensus 186 ~~is~~ev~~~L~~~~~~~~~~llDvR~~~ey~~ghIpgA~~ip~~~l~~~~~~~~~~~~~~~~iv~~C~~G~rs~~aa~ 265 (296)
..++++++.+.+.. +..+||+|++.||..||||||+|+|+.++.... ..++++++||+||.+|.||..++.
T Consensus 2 ~~i~~~el~~~~~~-----~~~liDvR~~~e~~~~hi~ga~~ip~~~~~~~~----~~~~~~~~iv~~c~~g~~s~~~~~ 72 (99)
T cd01527 2 TTISPNDACELLAQ-----GAVLVDIREPDEYLRERIPGARLVPLSQLESEG----LPLVGANAIIFHCRSGMRTQQNAE 72 (99)
T ss_pred CccCHHHHHHHHHC-----CCEEEECCCHHHHHhCcCCCCEECChhHhcccc----cCCCCCCcEEEEeCCCchHHHHHH
Confidence 35788889888875 368999999999999999999999999886532 236789999999999999999999
Q ss_pred HHHHcCCCceEEccchHHHhhhccC
Q 022496 266 WLQTQGFRRVFNVSGGIHAYATKVD 290 (296)
Q Consensus 266 ~L~~~G~~~v~~l~GG~~~W~~~~~ 290 (296)
.|.++||.||++|+||+.+|.....
T Consensus 73 ~L~~~g~~~v~~l~gG~~~W~~~~~ 97 (99)
T cd01527 73 RLAAISAGEAYVLEGGLDAWKAAGL 97 (99)
T ss_pred HHHHcCCccEEEeeCCHHHHHHCcC
Confidence 9999999999999999999997644
No 10
>KOG1530 consensus Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=99.85 E-value=3.3e-21 Score=145.83 Aligned_cols=103 Identities=29% Similarity=0.489 Sum_probs=84.9
Q ss_pred cCCCHHHHHHHhcCCCCCCCcEEEecCChHHHHhhCCCCceecccccccCCC----CCccC-----CCCCCCcEEEEeCC
Q 022496 186 QDIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWG----PDITV-----KFDPQKDTYVMCHH 256 (296)
Q Consensus 186 ~~is~~ev~~~L~~~~~~~~~~llDvR~~~ey~~ghIpgA~~ip~~~l~~~~----~~~~~-----~~~~~~~iv~~C~~ 256 (296)
..++.+++++++..+ +..+||||+++||..||+|.++|||+..-.... .++.. .-+.++.|||+|.+
T Consensus 23 ~sv~~~qvk~L~~~~----~~~llDVRepeEfk~gh~~~siNiPy~~~~~~~~l~~~eF~kqvg~~kp~~d~eiIf~C~S 98 (136)
T KOG1530|consen 23 QSVSVEQVKNLLQHP----DVVLLDVREPEEFKQGHIPASINIPYMSRPGAGALKNPEFLKQVGSSKPPHDKEIIFGCAS 98 (136)
T ss_pred EEEEHHHHHHHhcCC----CEEEEeecCHHHhhccCCcceEeccccccccccccCCHHHHHHhcccCCCCCCcEEEEecc
Confidence 457788899999874 589999999999999999999999996543321 12211 11457799999999
Q ss_pred ChhHHHHHHHHHHcCCCceEEccchHHHhhhccCCC
Q 022496 257 GMRSLQVAQWLQTQGFRRVFNVSGGIHAYATKVDPS 292 (296)
Q Consensus 257 G~rs~~aa~~L~~~G~~~v~~l~GG~~~W~~~~~~~ 292 (296)
|.||..|...|..+||+||.+|.|||.+|.....|.
T Consensus 99 G~Rs~~A~~~l~s~Gyknv~ny~Gs~~~W~~k~~~~ 134 (136)
T KOG1530|consen 99 GVRSLKATKILVSAGYKNVGNYPGSYLAWVDKGGPK 134 (136)
T ss_pred CcchhHHHHHHHHcCcccccccCccHHHHHHccCCC
Confidence 999999999999999999999999999999876654
No 11
>TIGR02933 nifM_nitrog nitrogen fixation protein NifM. Members of this protein family, found in a subset of nitrogen-fixing bacteria, are the nitrogen fixation protein NifM. NifM, homologous to peptidyl-prolyl cis-trans isomerases, appears to be an accessory protein for NifH, the Fe protein, also called component II or dinitrogenase reductase, of nitrogenase.
Probab=99.84 E-value=1.6e-21 Score=170.71 Aligned_cols=128 Identities=23% Similarity=0.456 Sum_probs=101.9
Q ss_pred ccCchhhcc-cccCCCCCCCCCCCceEEEeeEeeccc------hHHHHHHHHHHHhcCCccHHHHHHhhCCCCcccCCcc
Q 022496 65 SFTSPKAAS-FSSGTEGSSPGGGDREILVQHLLVKED------DLNLLSELQRRVSQGREDLSDLAVEHSICPSKGEGGM 137 (296)
Q Consensus 65 ~~~~~e~~~-~~~~~~~i~~~~~~~~~~~~~Il~~~~------~~~~a~~i~~~l~~~g~~F~~la~~~S~d~~~~~gG~ 137 (296)
.+++.|... |.... .....+..++++||+++.+ ++++|++|+++|++++.+|+++|++||+|+++.+||+
T Consensus 101 ~ise~ei~~yy~~~~---~~~~~~e~~~~~hIli~~~~~~~~~a~~~a~~l~~~l~~g~~~F~~lA~~~S~~~sa~~GGd 177 (256)
T TIGR02933 101 QPDDADVEAWYRRHA---EQFKRPEQRLTRHLLLTVNEDDREAVRTRILAILRRLRGKPAAFAEQAMRHSHCPTAMEGGL 177 (256)
T ss_pred CCCHHHHHHHHHHHH---HhcCCCCeEEEEEEEEECCcccHHHHHHHHHHHHHHHHhCcccHHHHHHHhCCCCccccCCc
Confidence 455655543 44333 2333456778999999853 3566889999997445799999999999998899999
Q ss_pred cccccCCCCcHHHHHHHhcCCCCcee-ceeecCcceEEEeehhhhhhhhcCCCHHHHHHHhc
Q 022496 138 LGWVRKGQLVPEFEEVAFTTPLNKVA-RCKTKFGWHLLQVLSEREASLLQDIQPDELHKKMQ 198 (296)
Q Consensus 138 lg~~~~~~l~~~~~~~~~~l~~G~vs-pv~~~~G~~Ii~v~~~~~~~~~~~is~~ev~~~L~ 198 (296)
|||++.++|+|+|.+++++|++|++| ||.+++||||+++.++++. ...+.++++..+.
T Consensus 178 lG~~~~~~l~~~~~~~l~~L~~G~vS~Pi~s~~G~hIlkl~~~~~~---~~~~~eevk~~I~ 236 (256)
T TIGR02933 178 LGWVSRGLLYPQLDAALFQLAEGELSPPIESEIGWHLLLCEAIRPA---RPLTLEEALPRAR 236 (256)
T ss_pred cCCcCCCccChHHHHHHHcCCCCCcCCceeeCCeEEEEEEeeecCC---CCCCHHHHHHHHH
Confidence 99999999999999999999999999 7999999999999998775 3356666655554
No 12
>PRK00162 glpE thiosulfate sulfurtransferase; Validated
Probab=99.84 E-value=7.3e-21 Score=145.06 Aligned_cols=99 Identities=31% Similarity=0.546 Sum_probs=87.0
Q ss_pred hcCCCHHHHHHHhcCCCCCCCcEEEecCChHHHHhhCCCCceecccccccCCCCCccCCCCCCCcEEEEeCCChhHHHHH
Q 022496 185 LQDIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKFDPQKDTYVMCHHGMRSLQVA 264 (296)
Q Consensus 185 ~~~is~~ev~~~L~~~~~~~~~~llDvR~~~ey~~ghIpgA~~ip~~~l~~~~~~~~~~~~~~~~iv~~C~~G~rs~~aa 264 (296)
.+.++++++.+.+.+. ...+||+|++.||..||||||+|+|+..|..+. ..++++++|+|||.+|.+|..++
T Consensus 4 ~~~is~~el~~~l~~~----~~~ivDvR~~~e~~~ghi~gA~~ip~~~l~~~~----~~~~~~~~ivv~c~~g~~s~~a~ 75 (108)
T PRK00162 4 FECINVEQAHQKLQEG----GAVLVDIRDPQSFAMGHAPGAFHLTNDSLGAFM----RQADFDTPVMVMCYHGNSSQGAA 75 (108)
T ss_pred ccccCHHHHHHHHHcC----CCEEEEcCCHHHHhcCCCCCCeECCHHHHHHHH----HhcCCCCCEEEEeCCCCCHHHHH
Confidence 3568899999988653 578999999999999999999999998876543 23578999999999999999999
Q ss_pred HHHHHcCCCceEEccchHHHhhhccCC
Q 022496 265 QWLQTQGFRRVFNVSGGIHAYATKVDP 291 (296)
Q Consensus 265 ~~L~~~G~~~v~~l~GG~~~W~~~~~~ 291 (296)
..|+..||+||++|+||+.+|.....|
T Consensus 76 ~~L~~~G~~~v~~l~GG~~~w~~~~~~ 102 (108)
T PRK00162 76 QYLLQQGFDVVYSIDGGFEAWRRTFPA 102 (108)
T ss_pred HHHHHCCchheEEecCCHHHHHhcCCC
Confidence 999999999999999999999987655
No 13
>PRK15441 peptidyl-prolyl cis-trans isomerase C; Provisional
Probab=99.84 E-value=1.3e-20 Score=139.49 Aligned_cols=89 Identities=39% Similarity=0.709 Sum_probs=82.5
Q ss_pred ceEEEeeEeeccchHHHHHHHHHHHhcCCccHHHHHHhhCCCCcccCCcccccccCCCCcHHHHHHHhcCCCCcee-cee
Q 022496 88 REILVQHLLVKEDDLNLLSELQRRVSQGREDLSDLAVEHSICPSKGEGGMLGWVRKGQLVPEFEEVAFTTPLNKVA-RCK 166 (296)
Q Consensus 88 ~~~~~~~Il~~~~~~~~a~~i~~~l~~~g~~F~~la~~~S~d~~~~~gG~lg~~~~~~l~~~~~~~~~~l~~G~vs-pv~ 166 (296)
.++.++||++.. +++|++++++|+ .|.+|+++|++||+++++..||+|||+..++++++|.++++.|++|++| |++
T Consensus 3 ~~~~~~~I~~~~--~~~A~~i~~~l~-~g~~F~~la~~~S~~~~~~~gG~lg~~~~~~l~~~f~~a~~~l~~G~vs~Pi~ 79 (93)
T PRK15441 3 KTAAALHILVKE--EKLALDLLEQIK-NGADFGKLAKKHSICPSGKRGGDLGEFRQGQMVPAFDKVVFSCPVLEPTGPLH 79 (93)
T ss_pred CceEEEEEEECC--HHHHHHHHHHHH-CCCCHHHHHHHhCCCchhhcCccceeecccccCHHHHHHHHhCCCCCcCCcEE
Confidence 468999999985 455999999996 8899999999999998778899999999999999999999999999999 899
Q ss_pred ecCcceEEEeehh
Q 022496 167 TKFGWHLLQVLSE 179 (296)
Q Consensus 167 ~~~G~~Ii~v~~~ 179 (296)
++.||||++++++
T Consensus 80 t~~G~hIlkv~~r 92 (93)
T PRK15441 80 TQFGYHIIKVLYR 92 (93)
T ss_pred cCCEEEEEEEEec
Confidence 9999999999875
No 14
>PLN02160 thiosulfate sulfurtransferase
Probab=99.83 E-value=2e-20 Score=148.28 Aligned_cols=100 Identities=23% Similarity=0.353 Sum_probs=82.2
Q ss_pred cCCCHHHHHHHhcCCCCCCCcEEEecCChHHHHhhCCCCc--eecccccccCCCCC---------ccCCCCCCCcEEEEe
Q 022496 186 QDIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGF--QVLPLRQFGSWGPD---------ITVKFDPQKDTYVMC 254 (296)
Q Consensus 186 ~~is~~ev~~~L~~~~~~~~~~llDvR~~~ey~~ghIpgA--~~ip~~~l~~~~~~---------~~~~~~~~~~iv~~C 254 (296)
..++.+++...+.+ +..+||||++.||..|||||| +|+|+..+... .. +...++++++|||||
T Consensus 15 ~~i~~~e~~~~~~~-----~~~lIDVR~~~E~~~ghIpgA~~iniP~~~~~~~-~~l~~~~~~~~~~~~~~~~~~IivyC 88 (136)
T PLN02160 15 VSVDVSQAKTLLQS-----GHQYLDVRTQDEFRRGHCEAAKIVNIPYMLNTPQ-GRVKNQEFLEQVSSLLNPADDILVGC 88 (136)
T ss_pred eEeCHHHHHHHHhC-----CCEEEECCCHHHHhcCCCCCcceecccchhcCcc-cccCCHHHHHHHHhccCCCCcEEEEC
Confidence 45778888888865 357999999999999999999 89997543210 11 112247889999999
Q ss_pred CCChhHHHHHHHHHHcCCCceEEccchHHHhhhccCC
Q 022496 255 HHGMRSLQVAQWLQTQGFRRVFNVSGGIHAYATKVDP 291 (296)
Q Consensus 255 ~~G~rs~~aa~~L~~~G~~~v~~l~GG~~~W~~~~~~ 291 (296)
++|.||..++..|...||++|++|.|||.+|.....|
T Consensus 89 ~sG~RS~~Aa~~L~~~G~~~v~~l~GG~~~W~~~g~p 125 (136)
T PLN02160 89 QSGARSLKATTELVAAGYKKVRNKGGGYLAWVDHSFP 125 (136)
T ss_pred CCcHHHHHHHHHHHHcCCCCeeecCCcHHHHhhCCCC
Confidence 9999999999999999999999999999999987665
No 15
>cd01525 RHOD_Kc Member of the Rhodanese Homology Domain superfamily. Included in this CD are the rhodanese-like domains found C-terminal of the serine/threonine protein kinases catalytic (S_TKc) domain and the Tre-2, BUB2p, Cdc16p (TBC) domain. The putative active site Cys residue is not present in this CD.
Probab=99.83 E-value=3e-20 Score=140.80 Aligned_cols=96 Identities=17% Similarity=0.250 Sum_probs=78.3
Q ss_pred CCHHHHHHHhcCCCCCCCcEEEecCChHHHHhhCCCCceecccccccCCCCCccCCCC--------CCCcEEEEeCCChh
Q 022496 188 IQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKFD--------PQKDTYVMCHHGMR 259 (296)
Q Consensus 188 is~~ev~~~L~~~~~~~~~~llDvR~~~ey~~ghIpgA~~ip~~~l~~~~~~~~~~~~--------~~~~iv~~C~~G~r 259 (296)
++.+++.+.+.+. .++..+||+|++.||..||||||+|+|+..+......+ ..++ ++++||+||.+|.+
T Consensus 1 is~~~l~~~l~~~--~~~~~liDvR~~~e~~~ghIpgA~~ip~~~~~~~~~~~-~~~~~~~~~~~~~~~~vv~~c~~g~~ 77 (105)
T cd01525 1 ISVYDVIRLLDNS--PAKLAAVDIRSSPDFRRGHIEGSINIPFSSVFLKEGEL-EQLPTVPRLENYKGKIIVIVSHSHKH 77 (105)
T ss_pred CCHHHHHHHHhCC--CCCeEEEECCCHHHHhCCccCCCEeCCHHHhccccccc-ccccchHHHHhhcCCeEEEEeCCCcc
Confidence 4677888888653 12578999999999999999999999998764321111 1122 48899999999999
Q ss_pred HHHHHHHHHHcCCCceEEccchHHHhh
Q 022496 260 SLQVAQWLQTQGFRRVFNVSGGIHAYA 286 (296)
Q Consensus 260 s~~aa~~L~~~G~~~v~~l~GG~~~W~ 286 (296)
|..++..|+..||+||++|+||+.+|+
T Consensus 78 s~~~a~~L~~~G~~~v~~l~GG~~a~~ 104 (105)
T cd01525 78 AALFAAFLVKCGVPRVCILDGGINALK 104 (105)
T ss_pred HHHHHHHHHHcCCCCEEEEeCcHHHhc
Confidence 999999999999999999999999995
No 16
>cd01519 RHOD_HSP67B2 Member of the Rhodanese Homology Domain superfamily. This CD includes the heat shock protein 67B2 of Drosophila melanogaster and other similar proteins, many of which are uncharacterized.
Probab=99.82 E-value=3.2e-20 Score=140.89 Aligned_cols=95 Identities=27% Similarity=0.399 Sum_probs=77.4
Q ss_pred CHHHHHHHhcCCCCCCCcEEEecCChHHHHhhCCCCceecccccccCCCC----Ccc-----CCCCCCCcEEEEeCCChh
Q 022496 189 QPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGP----DIT-----VKFDPQKDTYVMCHHGMR 259 (296)
Q Consensus 189 s~~ev~~~L~~~~~~~~~~llDvR~~~ey~~ghIpgA~~ip~~~l~~~~~----~~~-----~~~~~~~~iv~~C~~G~r 259 (296)
+.+++.+.++.. ++..+||+|++.||..||||||+|+|+..+.+... .+. ...+++++||+||++|.+
T Consensus 2 ~~~~~~~~l~~~---~~~~iiDvR~~~e~~~ghIpgA~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~c~~g~~ 78 (106)
T cd01519 2 SFEEVKNLPNPH---PNKVLIDVREPEELKTGKIPGAINIPLSSLPDALALSEEEFEKKYGFPKPSKDKELIFYCKAGVR 78 (106)
T ss_pred cHHHHHHhcCCC---CCEEEEECCCHHHHhcCcCCCcEEechHHhhhhhCCCHHHHHHHhcccCCCCCCeEEEECCCcHH
Confidence 456677777511 36889999999999999999999999987643210 010 123678999999999999
Q ss_pred HHHHHHHHHHcCCCceEEccchHHHhh
Q 022496 260 SLQVAQWLQTQGFRRVFNVSGGIHAYA 286 (296)
Q Consensus 260 s~~aa~~L~~~G~~~v~~l~GG~~~W~ 286 (296)
|..++..|..+||+||++|+||+.+|.
T Consensus 79 s~~~~~~l~~~G~~~v~~~~Gg~~~W~ 105 (106)
T cd01519 79 SKAAAELARSLGYENVGNYPGSWLDWA 105 (106)
T ss_pred HHHHHHHHHHcCCccceecCCcHHHHc
Confidence 999999999999999999999999996
No 17
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
Probab=99.82 E-value=4e-20 Score=137.74 Aligned_cols=92 Identities=33% Similarity=0.526 Sum_probs=81.0
Q ss_pred CCHHHHHHHhcCCCCCCCcEEEecCChHHHHh--hCCCCceecccccccCCCCCccCCCCCCCcEEEEeCCChhHHHHHH
Q 022496 188 IQPDELHKKMQDPNFHKEAQLIDVREPEEVAL--SSLPGFQVLPLRQFGSWGPDITVKFDPQKDTYVMCHHGMRSLQVAQ 265 (296)
Q Consensus 188 is~~ev~~~L~~~~~~~~~~llDvR~~~ey~~--ghIpgA~~ip~~~l~~~~~~~~~~~~~~~~iv~~C~~G~rs~~aa~ 265 (296)
+++.++.+.+.++ .+..+||+|++.+|.. ||||||+|+|+..+.... ..++++++|||||.+|.+|..++.
T Consensus 2 i~~~~~~~~~~~~---~~~~ivDvR~~~e~~~~~~hi~ga~~ip~~~~~~~~----~~~~~~~~ivv~c~~g~~s~~a~~ 74 (96)
T cd01444 2 ISVDELAELLAAG---EAPVLLDVRDPASYAALPDHIPGAIHLDEDSLDDWL----GDLDRDRPVVVYCYHGNSSAQLAQ 74 (96)
T ss_pred cCHHHHHHHHhcC---CCcEEEECCCHHHHhcccCCCCCCeeCCHHHHHHHH----hhcCCCCCEEEEeCCCChHHHHHH
Confidence 5677787777653 3578999999999999 999999999999886543 346889999999999999999999
Q ss_pred HHHHcCCCceEEccchHHHhh
Q 022496 266 WLQTQGFRRVFNVSGGIHAYA 286 (296)
Q Consensus 266 ~L~~~G~~~v~~l~GG~~~W~ 286 (296)
.|+..||+||++|+||+.+|.
T Consensus 75 ~l~~~G~~~v~~l~gG~~~w~ 95 (96)
T cd01444 75 ALREAGFTDVRSLAGGFEAWR 95 (96)
T ss_pred HHHHcCCceEEEcCCCHHHhc
Confidence 999999999999999999996
No 18
>cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily. Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain.
Probab=99.82 E-value=3.8e-20 Score=136.36 Aligned_cols=88 Identities=31% Similarity=0.493 Sum_probs=77.2
Q ss_pred CHHHHHHHhcCCCCCCCcEEEecCChHHHHhhCCCCceecccccccCCCCCccCCCCCCCcEEEEeCCChhHHHHHHHHH
Q 022496 189 QPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKFDPQKDTYVMCHHGMRSLQVAQWLQ 268 (296)
Q Consensus 189 s~~ev~~~L~~~~~~~~~~llDvR~~~ey~~ghIpgA~~ip~~~l~~~~~~~~~~~~~~~~iv~~C~~G~rs~~aa~~L~ 268 (296)
+++++.+.+. ++.++||+|++.+|..||||||+|+|..++..+. ..++++++||+||.+|.+|..++..|+
T Consensus 2 ~~~e~~~~~~-----~~~~iiD~R~~~~~~~~hipgA~~ip~~~~~~~~----~~~~~~~~vvl~c~~g~~a~~~a~~L~ 72 (90)
T cd01524 2 QWHELDNYRA-----DGVTLIDVRTPQEFEKGHIKGAINIPLDELRDRL----NELPKDKEIIVYCAVGLRGYIAARILT 72 (90)
T ss_pred CHHHHHHHhc-----CCCEEEECCCHHHHhcCCCCCCEeCCHHHHHHHH----HhcCCCCcEEEEcCCChhHHHHHHHHH
Confidence 4667777773 3678999999999999999999999998876543 235788999999999999999999999
Q ss_pred HcCCCceEEccchHHHhh
Q 022496 269 TQGFRRVFNVSGGIHAYA 286 (296)
Q Consensus 269 ~~G~~~v~~l~GG~~~W~ 286 (296)
..|| +|++|+||+.+|.
T Consensus 73 ~~G~-~v~~l~GG~~~w~ 89 (90)
T cd01524 73 QNGF-KVKNLDGGYKTYS 89 (90)
T ss_pred HCCC-CEEEecCCHHHhc
Confidence 9999 8999999999997
No 19
>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily. This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.
Probab=99.81 E-value=2.6e-20 Score=146.40 Aligned_cols=95 Identities=31% Similarity=0.452 Sum_probs=77.2
Q ss_pred CCHHHHHHHhcCCCCCCCcEEEecCChHHHHhhCCCCceecccccccCCC--------------------------CCcc
Q 022496 188 IQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWG--------------------------PDIT 241 (296)
Q Consensus 188 is~~ev~~~L~~~~~~~~~~llDvR~~~ey~~ghIpgA~~ip~~~l~~~~--------------------------~~~~ 241 (296)
++++++.+.+.+ +..+||||++.||..||||||+|||+..+.... ..+.
T Consensus 1 ~s~~el~~~l~~-----~~~iiDvR~~~e~~~ghIpgAinip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (128)
T cd01520 1 ITAEDLLALRKA-----DGPLIDVRSPKEFFEGHLPGAINLPLLDDEERALVGTLYKQQGREAAIELGLELVSGKLKRIL 75 (128)
T ss_pred CCHHHHHHHHhc-----CCEEEECCCHHHhccCcCCCcEEccCCChhHHHHhhhheeccCHHHHHHHHHHHHhhhHHHHH
Confidence 456778887762 568999999999999999999999996532110 0000
Q ss_pred -----CCCCCCCcEEEEeC-CChhHHHHHHHHHHcCCCceEEccchHHHhhhc
Q 022496 242 -----VKFDPQKDTYVMCH-HGMRSLQVAQWLQTQGFRRVFNVSGGIHAYATK 288 (296)
Q Consensus 242 -----~~~~~~~~iv~~C~-~G~rs~~aa~~L~~~G~~~v~~l~GG~~~W~~~ 288 (296)
..++++++||+||. +|.||..+++.|+.+|| +|++|+||+.+|...
T Consensus 76 ~~~~~~~i~~~~~vvvyC~~~G~rs~~a~~~L~~~G~-~v~~L~GG~~aw~~~ 127 (128)
T cd01520 76 NEAWEARLERDPKLLIYCARGGMRSQSLAWLLESLGI-DVPLLEGGYKAYRKF 127 (128)
T ss_pred HHHHHhccCCCCeEEEEeCCCCccHHHHHHHHHHcCC-ceeEeCCcHHHHHhh
Confidence 25789999999997 78999999999999999 699999999999864
No 20
>cd01447 Polysulfide_ST Polysulfide-sulfurtransferase - Rhodanese Homology Domain. This domain is believed to serve as a polysulfide binding and transferase domain in anaerobic gram-negative bacteria, functioning in oxidative phosphorylation with polysulfide-sulfur as a terminal electron acceptor. The active site contains the same conserved cysteine that is the catalytic residue in other Rhodanese Homology Domain proteins.
Probab=99.81 E-value=7.4e-20 Score=138.03 Aligned_cols=97 Identities=25% Similarity=0.480 Sum_probs=79.2
Q ss_pred CCHHHHHHHhcCCCCCCCcEEEecCChHHH-HhhCCCCceecccccccCCCCC----ccCCCCCCCcEEEEeCCChhHHH
Q 022496 188 IQPDELHKKMQDPNFHKEAQLIDVREPEEV-ALSSLPGFQVLPLRQFGSWGPD----ITVKFDPQKDTYVMCHHGMRSLQ 262 (296)
Q Consensus 188 is~~ev~~~L~~~~~~~~~~llDvR~~~ey-~~ghIpgA~~ip~~~l~~~~~~----~~~~~~~~~~iv~~C~~G~rs~~ 262 (296)
++.+++.+.+.+ .+.++||+|++.+| ..||||||+|+|+..+..+... ....++++++|||||.+|.+|..
T Consensus 1 is~~el~~~~~~----~~~~iiDvR~~~~~~~~ghIpga~~ip~~~~~~~~~~~~~~~~~~~~~~~~ivv~c~~g~~s~~ 76 (103)
T cd01447 1 LSPEDARALLGS----PGVLLVDVRDPRELERTGMIPGAFHAPRGMLEFWADPDSPYHKPAFAEDKPFVFYCASGWRSAL 76 (103)
T ss_pred CCHHHHHHHHhC----CCeEEEECCCHHHHHhcCCCCCcEEcccchhhhhcCccccccccCCCCCCeEEEEcCCCCcHHH
Confidence 356777777765 36789999999998 5799999999998776432211 11236789999999999999999
Q ss_pred HHHHHHHcCCCceEEccchHHHhhhc
Q 022496 263 VAQWLQTQGFRRVFNVSGGIHAYATK 288 (296)
Q Consensus 263 aa~~L~~~G~~~v~~l~GG~~~W~~~ 288 (296)
+++.|..+||+||+.|+||+.+|...
T Consensus 77 ~~~~l~~~G~~~v~~l~Gg~~~w~~~ 102 (103)
T cd01447 77 AGKTLQDMGLKPVYNIEGGFKDWKEA 102 (103)
T ss_pred HHHHHHHcChHHhEeecCcHHHHhhc
Confidence 99999999999999999999999753
No 21
>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.
Probab=99.81 E-value=2.8e-20 Score=138.79 Aligned_cols=83 Identities=23% Similarity=0.276 Sum_probs=71.2
Q ss_pred CCcEEEecCChHHHHhhCCCCceecccccccCCCCCc--cCCCCCCCcEEEEeCCChhHHHHHHHHHHcCCCceEEccch
Q 022496 204 KEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDI--TVKFDPQKDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGG 281 (296)
Q Consensus 204 ~~~~llDvR~~~ey~~ghIpgA~~ip~~~l~~~~~~~--~~~~~~~~~iv~~C~~G~rs~~aa~~L~~~G~~~v~~l~GG 281 (296)
++..+||+|++.+|..||||||+|+|+..+......+ ....+++++||+||.+|.+|..++.+|+..||+||++|+||
T Consensus 11 ~~~~iiDvR~~~~~~~~hIpgA~~ip~~~~~~~~~~~~~~~~~~~~~~ivv~c~~g~~s~~~~~~l~~~G~~~v~~l~GG 90 (96)
T cd01529 11 PGTALLDVRAEDEYAAGHLPGKRSIPGAALVLRSQELQALEAPGRATRYVLTCDGSLLARFAAQELLALGGKPVALLDGG 90 (96)
T ss_pred CCeEEEeCCCHHHHcCCCCCCcEeCCHHHhcCCHHHHHHhhcCCCCCCEEEEeCChHHHHHHHHHHHHcCCCCEEEeCCC
Confidence 4678999999999999999999999987765432221 11247889999999999999999999999999999999999
Q ss_pred HHHhh
Q 022496 282 IHAYA 286 (296)
Q Consensus 282 ~~~W~ 286 (296)
+.+|.
T Consensus 91 ~~~W~ 95 (96)
T cd01529 91 TSAWV 95 (96)
T ss_pred HHHhc
Confidence 99996
No 22
>PTZ00356 peptidyl-prolyl cis-trans isomerase (PPIase); Provisional
Probab=99.80 E-value=1.8e-19 Score=138.67 Aligned_cols=90 Identities=26% Similarity=0.500 Sum_probs=82.0
Q ss_pred CceEEEeeEeeccc--------------------hHHHHHHHHHHHhcCC-ccHHHHHHhhCCCCcccCCcccccccCCC
Q 022496 87 DREILVQHLLVKED--------------------DLNLLSELQRRVSQGR-EDLSDLAVEHSICPSKGEGGMLGWVRKGQ 145 (296)
Q Consensus 87 ~~~~~~~~Il~~~~--------------------~~~~a~~i~~~l~~~g-~~F~~la~~~S~d~~~~~gG~lg~~~~~~ 145 (296)
+++++++|||++.. +++++++|+++|+ .| .+|+++|++||+++++.+||+|||+..++
T Consensus 3 ~~~~~~~hIli~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~i~~~l~-~g~~~F~~la~~~S~~~~~~~gG~lG~~~~~~ 81 (115)
T PTZ00356 3 GDTVRAAHLLIKHTGSRNPVSRRTGKPVTRSKEEAIKELAKWREQIV-SGEKTFEEIARQRSDCGSAAKGGDLGFFGRGQ 81 (115)
T ss_pred CcEEEEEEEEEecCCCcCcccccccccccccHHHHHHHHHHHHHHHH-hCccCHHHHHHHhCCCchhhcCccceeEcccc
Confidence 58999999999842 3568999999996 66 59999999999988888999999999999
Q ss_pred CcHHHHHHHhcCCCCcee-ceeecCcceEEEee
Q 022496 146 LVPEFEEVAFTTPLNKVA-RCKTKFGWHLLQVL 177 (296)
Q Consensus 146 l~~~~~~~~~~l~~G~vs-pv~~~~G~~Ii~v~ 177 (296)
++|+|.++++.|++|++| ||++++||||+++.
T Consensus 82 L~~~~~~a~~~L~~Geis~Pi~t~~G~hIlk~~ 114 (115)
T PTZ00356 82 MQKPFEDAAFALKVGEISDIVHTDSGVHIILRL 114 (115)
T ss_pred cCHHHHHHHHcCCCCCCCCcEEECCEEEEEEEc
Confidence 999999999999999999 89999999999875
No 23
>smart00450 RHOD Rhodanese Homology Domain. An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.
Probab=99.80 E-value=1.6e-19 Score=134.49 Aligned_cols=87 Identities=29% Similarity=0.514 Sum_probs=75.7
Q ss_pred CCcEEEecCChHHHHhhCCCCceecccccccCCCCCc----------cCCCCCCCcEEEEeCCChhHHHHHHHHHHcCCC
Q 022496 204 KEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDI----------TVKFDPQKDTYVMCHHGMRSLQVAQWLQTQGFR 273 (296)
Q Consensus 204 ~~~~llDvR~~~ey~~ghIpgA~~ip~~~l~~~~~~~----------~~~~~~~~~iv~~C~~G~rs~~aa~~L~~~G~~ 273 (296)
++..+||+|++.||..||||||+|+|+..+....... ....+++++||+||.+|.+|..++..|+..||+
T Consensus 3 ~~~~ivDvR~~~e~~~~hi~ga~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~c~~g~~a~~~~~~l~~~G~~ 82 (100)
T smart00450 3 EKVVLLDVRSPEEYEGGHIPGAVNIPLSELLDRRGELDILEFEELLKRLGLDKDKPVVVYCRSGNRSAKAAWLLRELGFK 82 (100)
T ss_pred CCEEEEECCCHHHhccCCCCCceeCCHHHhccCCCCcCHHHHHHHHHHcCCCCCCeEEEEeCCCcHHHHHHHHHHHcCCC
Confidence 4678999999999999999999999998876543211 234678999999999999999999999999999
Q ss_pred ceEEccchHHHhhhccC
Q 022496 274 RVFNVSGGIHAYATKVD 290 (296)
Q Consensus 274 ~v~~l~GG~~~W~~~~~ 290 (296)
+|++|+||+.+|.....
T Consensus 83 ~v~~l~GG~~~w~~~~~ 99 (100)
T smart00450 83 NVYLLDGGYKEWSAAGP 99 (100)
T ss_pred ceEEecCCHHHHHhcCC
Confidence 99999999999997654
No 24
>cd01530 Cdc25 Cdc25 phosphatases are members of the Rhodanese Homology Domain superfamily. They activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. Cdc25A phosphatase functions to regulate S phase entry and Cdc25B is required for G2/M phase transition of the cell cycle. The Cdc25 domain binds oxyanions at the catalytic site and has the signature motif (H/YCxxxxxR).
Probab=99.80 E-value=7.1e-20 Score=142.33 Aligned_cols=101 Identities=19% Similarity=0.317 Sum_probs=80.6
Q ss_pred cCCCHHHHHHHhcCCC--CCCCcEEEecCChHHHHhhCCCCceecccc-cccCCCCCc--cCCCCCCCcEEEEeC-CChh
Q 022496 186 QDIQPDELHKKMQDPN--FHKEAQLIDVREPEEVALSSLPGFQVLPLR-QFGSWGPDI--TVKFDPQKDTYVMCH-HGMR 259 (296)
Q Consensus 186 ~~is~~ev~~~L~~~~--~~~~~~llDvR~~~ey~~ghIpgA~~ip~~-~l~~~~~~~--~~~~~~~~~iv~~C~-~G~r 259 (296)
..++++++.+++.+.. ..++..+||||++.||..||||||+|+|+. .+....... ...++++++|||||. +|.|
T Consensus 2 ~~Is~~el~~~l~~~~~~~~~~~~liDvR~~~e~~~ghI~gA~~ip~~~~l~~~~~~~~~~~~~~~~~~vv~yC~~sg~r 81 (121)
T cd01530 2 KRISPETLARLLQGKYDNFFDKYIIIDCRFPYEYNGGHIKGAVNLSTKDELEEFFLDKPGVASKKKRRVLIFHCEFSSKR 81 (121)
T ss_pred CccCHHHHHHHHhcccccCCCCEEEEECCCHHHHhCCcCCCCEeCCcHHHHHHHHHHhhcccccCCCCEEEEECCCcccc
Confidence 3478889988886531 013578999999999999999999999986 454421110 012578999999997 9999
Q ss_pred HHHHHHHHHHc------------CCCceEEccchHHHhh
Q 022496 260 SLQVAQWLQTQ------------GFRRVFNVSGGIHAYA 286 (296)
Q Consensus 260 s~~aa~~L~~~------------G~~~v~~l~GG~~~W~ 286 (296)
|..++..|+.. ||.+|++|+|||.+|.
T Consensus 82 s~~aa~~L~~~~~~~~~~~~~~~g~~~v~~L~GG~~~f~ 120 (121)
T cd01530 82 GPRMARHLRNLDRELNSNRYPLLYYPEIYILEGGYKNFF 120 (121)
T ss_pred HHHHHHHHHHHhhhhccccCCCCCCCeEEEEcChhHhhc
Confidence 99999999985 9999999999999984
No 25
>PRK01415 hypothetical protein; Validated
Probab=99.80 E-value=9.6e-20 Score=156.66 Aligned_cols=102 Identities=19% Similarity=0.375 Sum_probs=87.3
Q ss_pred cCCCHHHHHHHhcCCCCCCCcEEEecCChHHHHhhCCCCceecccccccCCCCCc--cCCCCCCCcEEEEeCCChhHHHH
Q 022496 186 QDIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDI--TVKFDPQKDTYVMCHHGMRSLQV 263 (296)
Q Consensus 186 ~~is~~ev~~~L~~~~~~~~~~llDvR~~~ey~~ghIpgA~~ip~~~l~~~~~~~--~~~~~~~~~iv~~C~~G~rs~~a 263 (296)
..+++.++.+++++ ++.++||||++.||..||||||+|+|...|.+..... ...++++++|++||.+|.||..+
T Consensus 112 ~~i~p~e~~~ll~~----~~~vvIDVRn~~E~~~Ghi~gAinip~~~f~e~~~~~~~~~~~~k~k~Iv~yCtgGiRs~kA 187 (247)
T PRK01415 112 EYIEPKDWDEFITK----QDVIVIDTRNDYEVEVGTFKSAINPNTKTFKQFPAWVQQNQELLKGKKIAMVCTGGIRCEKS 187 (247)
T ss_pred cccCHHHHHHHHhC----CCcEEEECCCHHHHhcCCcCCCCCCChHHHhhhHHHHhhhhhhcCCCeEEEECCCChHHHHH
Confidence 55889999999976 4789999999999999999999999988775422111 12357899999999999999999
Q ss_pred HHHHHHcCCCceEEccchHHHhhhccCC
Q 022496 264 AQWLQTQGFRRVFNVSGGIHAYATKVDP 291 (296)
Q Consensus 264 a~~L~~~G~~~v~~l~GG~~~W~~~~~~ 291 (296)
+..|+++||+||+.|.||+.+|..+..+
T Consensus 188 a~~L~~~Gf~~Vy~L~GGi~~w~~~~~~ 215 (247)
T PRK01415 188 TSLLKSIGYDEVYHLKGGILQYLEDTQN 215 (247)
T ss_pred HHHHHHcCCCcEEEechHHHHHHHhccc
Confidence 9999999999999999999999986654
No 26
>PF00639 Rotamase: PPIC-type PPIASE domain; InterPro: IPR000297 Peptidylprolyl isomerase (5.2.1.8 from EC) is an enzyme that accelerates protein folding by catalyzing the cis-trans isomerization of proline imidic peptide bonds in oligopeptides []. It has been reported in bacteria and eukayotes. Synonyms for proteins with this domain are: Peptidylprolyl isomerase, Peptidyl-prolyl cis-trans isomerase, PPIase, rotamase, cyclophilin, FKBP65.; GO: 0016853 isomerase activity; PDB: 2JZV_A 2PV3_B 1M5Y_A 2PV2_B 2PV1_A 1JNS_A 1JNT_A 3KAB_A 2ZR6_A 2XPB_A ....
Probab=99.80 E-value=2.5e-19 Score=133.36 Aligned_cols=84 Identities=37% Similarity=0.608 Sum_probs=76.7
Q ss_pred eEeeccc--------hHHHHHHHHHHHhcCCcc-HHHHHHhhCCC-CcccCCcccccccCCCCcHHHHHHHhcCCCCcee
Q 022496 94 HLLVKED--------DLNLLSELQRRVSQGRED-LSDLAVEHSIC-PSKGEGGMLGWVRKGQLVPEFEEVAFTTPLNKVA 163 (296)
Q Consensus 94 ~Il~~~~--------~~~~a~~i~~~l~~~g~~-F~~la~~~S~d-~~~~~gG~lg~~~~~~l~~~~~~~~~~l~~G~vs 163 (296)
|||++.+ ++++|++++++|+ .|.+ |+++|++||++ +++.+||++||+..++++++|.+++++|++|++|
T Consensus 1 HIl~~~~~~~~~~~~~~~~a~~i~~~l~-~g~~~F~~~A~~yS~~~~~~~~gG~~g~~~~~~l~~~~~~~~~~l~~Gevs 79 (95)
T PF00639_consen 1 HILVKPPPSDEEKDAAKKKAEEIYEQLK-KGEDSFAELAREYSEDSPSAENGGDLGWISRGQLPPEFEKALFALKPGEVS 79 (95)
T ss_dssp EEEEESTTSCCHHHHHHHHHHHHHHHHH-TTSSSHHHHHHHHCSSSCTGGGTTEEEEEETTSSBHHHHHHHHTSTTTSBE
T ss_pred CEEEECCCchhhHHHHHHHHHHHHHHHH-hCchhHHHHHHHhCCCcccccccCccccccCCcccHHHHHHHHhCCCCCcC
Confidence 8999864 4788999999997 6655 99999999966 5999999999999999999999999999999999
Q ss_pred -ceeecCcceEEEeeh
Q 022496 164 -RCKTKFGWHLLQVLS 178 (296)
Q Consensus 164 -pv~~~~G~~Ii~v~~ 178 (296)
|+++..||||+++.+
T Consensus 80 ~pi~t~~G~~Ii~v~d 95 (95)
T PF00639_consen 80 KPIETDNGYHIIKVED 95 (95)
T ss_dssp EEEEETTEEEEEEEEE
T ss_pred CCEEECCEEEEEEEEC
Confidence 899999999999864
No 27
>cd01522 RHOD_1 Member of the Rhodanese Homology Domain superfamily, subgroup 1. This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins.
Probab=99.80 E-value=7.7e-20 Score=141.39 Aligned_cols=100 Identities=22% Similarity=0.385 Sum_probs=81.8
Q ss_pred CCHHHHHHHhcCCCCCCCcEEEecCChHHHH-hhCCCCceecccccccCCC------CCccCCCCCCCcEEEEeCCChhH
Q 022496 188 IQPDELHKKMQDPNFHKEAQLIDVREPEEVA-LSSLPGFQVLPLRQFGSWG------PDITVKFDPQKDTYVMCHHGMRS 260 (296)
Q Consensus 188 is~~ev~~~L~~~~~~~~~~llDvR~~~ey~-~ghIpgA~~ip~~~l~~~~------~~~~~~~~~~~~iv~~C~~G~rs 260 (296)
+++.++.+++.+. ++..+||||++.||+ .||||||+|+|+.++.... ..+...++++++||+||.+|.||
T Consensus 1 is~~el~~~l~~~---~~~~vIDvR~~~e~~~~ghIpgA~~ip~~~~~~~~~~~~~~~~l~~~~~~~~~ivv~C~~G~rs 77 (117)
T cd01522 1 LTPAEAWALLQAD---PQAVLVDVRTEAEWKFVGGVPDAVHVAWQVYPDMEINPNFLAELEEKVGKDRPVLLLCRSGNRS 77 (117)
T ss_pred CCHHHHHHHHHhC---CCeEEEECCCHHHHhcccCCCCceecchhhccccccCHHHHHHHHhhCCCCCeEEEEcCCCccH
Confidence 4577888888763 368899999999999 9999999999998765321 01111236889999999999999
Q ss_pred HHHHHHHHHcCCCceEEccchHHHhhhccC
Q 022496 261 LQVAQWLQTQGFRRVFNVSGGIHAYATKVD 290 (296)
Q Consensus 261 ~~aa~~L~~~G~~~v~~l~GG~~~W~~~~~ 290 (296)
..++..|+.+||+||+.|.||+.+|....+
T Consensus 78 ~~aa~~L~~~G~~~v~~l~gG~~~~~~~~~ 107 (117)
T cd01522 78 IAAAEAAAQAGFTNVYNVLEGFEGDLDAAG 107 (117)
T ss_pred HHHHHHHHHCCCCeEEECcCceecCCCCCC
Confidence 999999999999999999999999965443
No 28
>cd01521 RHOD_PspE2 Member of the Rhodanese Homology Domain superfamily. This CD includes the putative rhodanese-like protein, Psp2, of Yersinia pestis biovar Medievalis and other similar uncharacterized proteins.
Probab=99.79 E-value=4.3e-19 Score=135.74 Aligned_cols=100 Identities=24% Similarity=0.282 Sum_probs=84.0
Q ss_pred cCCCHHHHHHHhcCCCCCCCcEEEecCChHHHHhhCCCCceecccccccCCCCCccCCCCCCCcEEEEeCCCh--hHHHH
Q 022496 186 QDIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKFDPQKDTYVMCHHGM--RSLQV 263 (296)
Q Consensus 186 ~~is~~ev~~~L~~~~~~~~~~llDvR~~~ey~~ghIpgA~~ip~~~l~~~~~~~~~~~~~~~~iv~~C~~G~--rs~~a 263 (296)
..++.+++.+.+.++. +..++||+|++.+|..||||||+|+|...+..+ ....++++++|||||.+|. +|..+
T Consensus 8 ~~~s~~el~~~l~~~~--~~~~iiDvR~~~e~~~ghIpgA~~ip~~~l~~~---~~~~i~~~~~vvvyc~~g~~~~s~~~ 82 (110)
T cd01521 8 FETDCWDVAIALKNGK--PDFVLVDVRSAEAYARGHVPGAINLPHREICEN---ATAKLDKEKLFVVYCDGPGCNGATKA 82 (110)
T ss_pred eecCHHHHHHHHHcCC--CCEEEEECCCHHHHhcCCCCCCEeCCHHHhhhH---hhhcCCCCCeEEEEECCCCCchHHHH
Confidence 4588899999887531 257899999999999999999999999887632 1234688999999999874 89999
Q ss_pred HHHHHHcCCCceEEccchHHHhhhccCC
Q 022496 264 AQWLQTQGFRRVFNVSGGIHAYATKVDP 291 (296)
Q Consensus 264 a~~L~~~G~~~v~~l~GG~~~W~~~~~~ 291 (296)
+..|+.+||+ |++|+||+.+|.....|
T Consensus 83 a~~l~~~G~~-v~~l~GG~~~W~~~g~~ 109 (110)
T cd01521 83 ALKLAELGFP-VKEMIGGLDWWKREGYA 109 (110)
T ss_pred HHHHHHcCCe-EEEecCCHHHHHHCCCC
Confidence 9999999995 99999999999986544
No 29
>COG0607 PspE Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=99.79 E-value=4.8e-19 Score=135.05 Aligned_cols=90 Identities=32% Similarity=0.523 Sum_probs=80.4
Q ss_pred CCcEEEecCChHHHHhhCCCC-ceecccccccCCCCCccCCCCCCCcEEEEeCCChhHHHHHHHHHHcCCCceEEccchH
Q 022496 204 KEAQLIDVREPEEVALSSLPG-FQVLPLRQFGSWGPDITVKFDPQKDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGI 282 (296)
Q Consensus 204 ~~~~llDvR~~~ey~~ghIpg-A~~ip~~~l~~~~~~~~~~~~~~~~iv~~C~~G~rs~~aa~~L~~~G~~~v~~l~GG~ 282 (296)
+...++|||++.||..+|||| ++|+|..++........ ++++++|||||.+|.||..++..|+.+||++++++.||+
T Consensus 19 ~~~~liDvR~~~e~~~~~i~~~~~~ip~~~~~~~~~~~~--~~~~~~ivv~C~~G~rS~~aa~~L~~~G~~~~~~l~gG~ 96 (110)
T COG0607 19 EDAVLLDVREPEEYERGHIPGAAINIPLSELKAAENLLE--LPDDDPIVVYCASGVRSAAAAAALKLAGFTNVYNLDGGI 96 (110)
T ss_pred CCCEEEeccChhHhhhcCCCcceeeeecccchhhhcccc--cCCCCeEEEEeCCCCChHHHHHHHHHcCCccccccCCcH
Confidence 478999999999999999999 99999999877533322 578999999999999999999999999999998999999
Q ss_pred HHhhhccCCCCCC
Q 022496 283 HAYATKVDPSIPT 295 (296)
Q Consensus 283 ~~W~~~~~~~~~~ 295 (296)
.+|..+..|..+.
T Consensus 97 ~~w~~~~~~~~~~ 109 (110)
T COG0607 97 DAWKGAGLPLVRG 109 (110)
T ss_pred HHHHhcCCCcccC
Confidence 9999988886553
No 30
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=99.79 E-value=3.2e-19 Score=165.18 Aligned_cols=106 Identities=34% Similarity=0.607 Sum_probs=93.5
Q ss_pred cCCCHHHHHHHhcCCCCCCCcEEEecCChHHHHhhCCCCceecccccccCCCCCccCCCCCCCcEEEEeCCChhHHHHHH
Q 022496 186 QDIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKFDPQKDTYVMCHHGMRSLQVAQ 265 (296)
Q Consensus 186 ~~is~~ev~~~L~~~~~~~~~~llDvR~~~ey~~ghIpgA~~ip~~~l~~~~~~~~~~~~~~~~iv~~C~~G~rs~~aa~ 265 (296)
..++.+++.+.++++ .+..+||+|++.||..||||||+|+|+..+... .....++++++|||||++|.||..++.
T Consensus 287 ~~Is~~el~~~l~~~---~~~~lIDvR~~~ef~~ghIpGAinip~~~l~~~--~~~~~l~~d~~iVvyC~~G~rS~~aa~ 361 (392)
T PRK07878 287 STITPRELKEWLDSG---KKIALIDVREPVEWDIVHIPGAQLIPKSEILSG--EALAKLPQDRTIVLYCKTGVRSAEALA 361 (392)
T ss_pred CccCHHHHHHHHhCC---CCeEEEECCCHHHHhcCCCCCCEEcChHHhcch--hHHhhCCCCCcEEEEcCCChHHHHHHH
Confidence 568888999888754 357899999999999999999999999887541 122346889999999999999999999
Q ss_pred HHHHcCCCceEEccchHHHhhhccCCCCCCC
Q 022496 266 WLQTQGFRRVFNVSGGIHAYATKVDPSIPTY 296 (296)
Q Consensus 266 ~L~~~G~~~v~~l~GG~~~W~~~~~~~~~~~ 296 (296)
.|++.||+||++|+||+.+|..+.++.+|.|
T Consensus 362 ~L~~~G~~~V~~L~GG~~~W~~~~~~~~p~~ 392 (392)
T PRK07878 362 ALKKAGFSDAVHLQGGVVAWAKQVDPSLPMY 392 (392)
T ss_pred HHHHcCCCcEEEecCcHHHHHHhcCCCCCCC
Confidence 9999999999999999999999999999998
No 31
>cd01449 TST_Repeat_2 Thiosulfate sulfurtransferase (TST), C-terminal, catalytic domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the second repeat. Only the second repeat contains the catalytically active Cys residue.
Probab=99.79 E-value=3.7e-19 Score=137.69 Aligned_cols=94 Identities=20% Similarity=0.361 Sum_probs=77.8
Q ss_pred CHHHHHHHhcCCCCCCCcEEEecCChHHHHh-----------hCCCCceecccccccCCCCC---------ccC--CCCC
Q 022496 189 QPDELHKKMQDPNFHKEAQLIDVREPEEVAL-----------SSLPGFQVLPLRQFGSWGPD---------ITV--KFDP 246 (296)
Q Consensus 189 s~~ev~~~L~~~~~~~~~~llDvR~~~ey~~-----------ghIpgA~~ip~~~l~~~~~~---------~~~--~~~~ 246 (296)
++.++.+.+++ .+..+||+|++.||.. ||||||+|+|+..+...... +.. .+++
T Consensus 2 s~~~l~~~l~~----~~~~iiDvR~~~e~~~~~~~~~~~~~~ghIpgA~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (118)
T cd01449 2 TAEEVLANLDS----GDVQLVDARSPERFRGEVPEPRPGLRSGHIPGAVNIPWTSLLDEDGTFKSPEELRALFAALGITP 77 (118)
T ss_pred CHHHHHHhcCC----CCcEEEeCCCHHHcCCcCCCCCCCCcCCcCCCCcccChHHhcCCCCCcCCHHHHHHHHHHcCCCC
Confidence 56677777754 3578999999999987 99999999999876542111 011 3468
Q ss_pred CCcEEEEeCCChhHHHHHHHHHHcCCCceEEccchHHHhh
Q 022496 247 QKDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGIHAYA 286 (296)
Q Consensus 247 ~~~iv~~C~~G~rs~~aa~~L~~~G~~~v~~l~GG~~~W~ 286 (296)
+++||+||++|.+|..++..|+.+||+||++|+||+.+|.
T Consensus 78 ~~~iv~yc~~g~~s~~~~~~l~~~G~~~v~~l~GG~~~W~ 117 (118)
T cd01449 78 DKPVIVYCGSGVTACVLLLALELLGYKNVRLYDGSWSEWG 117 (118)
T ss_pred CCCEEEECCcHHHHHHHHHHHHHcCCCCeeeeCChHHHhc
Confidence 9999999999999999999999999999999999999996
No 32
>TIGR02981 phageshock_pspE phage shock operon rhodanese PspE. Members of this very narrowly defined protein family are proteins active as rhodanese (EC 2.8.1.1) and found in the extended variants of the phage shock protein (psp operon) in Escherichia coli and a few closely related species. Note that the designation phage shock protein PspE has been applied, incorrectly, in many instances where the genome lacks the phage shock regulon entirely.
Probab=99.79 E-value=1.4e-19 Score=135.67 Aligned_cols=81 Identities=25% Similarity=0.360 Sum_probs=70.4
Q ss_pred CCcEEEecCChHHHHhhCCCCceecccccccCCCCCccCCCCCCCcEEEEeCCChhHHHHHHHHHHcCCCceEEccchHH
Q 022496 204 KEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKFDPQKDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGIH 283 (296)
Q Consensus 204 ~~~~llDvR~~~ey~~ghIpgA~~ip~~~l~~~~~~~~~~~~~~~~iv~~C~~G~rs~~aa~~L~~~G~~~v~~l~GG~~ 283 (296)
....+||+|++.||..||||||+|+|+.++......+. .+++++|||||.+|.||..++..|+++||++|+++ ||+.
T Consensus 17 ~~~~lIDvR~~~ef~~ghIpgAinip~~~l~~~l~~~~--~~~~~~vvlyC~~G~rS~~aa~~L~~~G~~~v~~~-GG~~ 93 (101)
T TIGR02981 17 AAEHWIDVRIPEQYQQEHIQGAINIPLKEIKEHIATAV--PDKNDTVKLYCNAGRQSGMAKDILLDMGYTHAENA-GGIK 93 (101)
T ss_pred cCCEEEECCCHHHHhcCCCCCCEECCHHHHHHHHHHhC--CCCCCeEEEEeCCCHHHHHHHHHHHHcCCCeEEec-CCHH
Confidence 45679999999999999999999999988765433322 25788999999999999999999999999999885 9999
Q ss_pred Hhhh
Q 022496 284 AYAT 287 (296)
Q Consensus 284 ~W~~ 287 (296)
+|..
T Consensus 94 ~~~~ 97 (101)
T TIGR02981 94 DIAM 97 (101)
T ss_pred Hhhh
Confidence 9985
No 33
>cd01448 TST_Repeat_1 Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the 1st repeat, which does not contain the catalytically active Cys residue. The role of the 1st repeat is uncertain, but it is believed to be involved in protein interaction.
Probab=99.79 E-value=6.9e-19 Score=137.04 Aligned_cols=97 Identities=20% Similarity=0.274 Sum_probs=80.7
Q ss_pred CCHHHHHHHhcCCCCCCCcEEEecCCh-------HHHHhhCCCCceecccccccCCC----CCcc-----------CCCC
Q 022496 188 IQPDELHKKMQDPNFHKEAQLIDVREP-------EEVALSSLPGFQVLPLRQFGSWG----PDIT-----------VKFD 245 (296)
Q Consensus 188 is~~ev~~~L~~~~~~~~~~llDvR~~-------~ey~~ghIpgA~~ip~~~l~~~~----~~~~-----------~~~~ 245 (296)
++++++.+.+.+. ...+||+|++ .+|..||||||+|+|+.++.... +.+. ..++
T Consensus 2 i~~~~l~~~l~~~----~~~ivDvR~~~~~~~~~~~~~~ghI~ga~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (122)
T cd01448 2 VSPDWLAEHLDDP----DVRILDARWYLPDRDGRKEYLEGHIPGAVFFDLDEDLDDKSPGPHMLPSPEEFAELLGSLGIS 77 (122)
T ss_pred cCHHHHHHHhCCC----CeEEEEeecCCCCCchhhHHhhCCCCCCEEcChhhccccCCCCCCCCCCHHHHHHHHHHcCCC
Confidence 5677888888652 5789999999 99999999999999998875421 1111 1357
Q ss_pred CCCcEEEEeCC-ChhHHHHHHHHHHcCCCceEEccchHHHhhhc
Q 022496 246 PQKDTYVMCHH-GMRSLQVAQWLQTQGFRRVFNVSGGIHAYATK 288 (296)
Q Consensus 246 ~~~~iv~~C~~-G~rs~~aa~~L~~~G~~~v~~l~GG~~~W~~~ 288 (296)
++++|||||++ |.+|..++..|+.+||+||++|+|||.+|...
T Consensus 78 ~~~~vv~~c~~g~~~a~~~~~~l~~~G~~~v~~l~GG~~~W~~~ 121 (122)
T cd01448 78 NDDTVVVYDDGGGFFAARAWWTLRYFGHENVRVLDGGLQAWKAE 121 (122)
T ss_pred CCCEEEEECCCCCccHHHHHHHHHHcCCCCEEEecCCHHHHHhC
Confidence 89999999999 59999999999999999999999999999864
No 34
>cd01532 4RHOD_Repeat_1 Member of the Rhodanese Homology Domain superfamily, repeat 1. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 1st repeat which does not contain the putative catalytic Cys residue.
Probab=99.79 E-value=2.5e-19 Score=132.60 Aligned_cols=80 Identities=26% Similarity=0.307 Sum_probs=68.3
Q ss_pred CCcEEEecCChHHHHhhCCCCceecccccccCCCCCccCCC-CCCCcEEEEeCCChh--HHHHHHHHHHcCCCceEEccc
Q 022496 204 KEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKF-DPQKDTYVMCHHGMR--SLQVAQWLQTQGFRRVFNVSG 280 (296)
Q Consensus 204 ~~~~llDvR~~~ey~~ghIpgA~~ip~~~l~~~~~~~~~~~-~~~~~iv~~C~~G~r--s~~aa~~L~~~G~~~v~~l~G 280 (296)
++..+||+|++.||..||||||+|+|...+.... ...+ +++++|||||.+|.+ |..++..|+..||++|++|+|
T Consensus 9 ~~~~liDvR~~~e~~~~hi~ga~~ip~~~~~~~~---~~~~~~~~~~ivl~c~~G~~~~s~~aa~~L~~~G~~~v~~l~G 85 (92)
T cd01532 9 EEIALIDVREEDPFAQSHPLWAANLPLSRLELDA---WVRIPRRDTPIVVYGEGGGEDLAPRAARRLSELGYTDVALLEG 85 (92)
T ss_pred CCeEEEECCCHHHHhhCCcccCeeCCHHHHHhhh---HhhCCCCCCeEEEEeCCCCchHHHHHHHHHHHcCccCEEEccC
Confidence 3678999999999999999999999998764321 1112 358899999999987 689999999999999999999
Q ss_pred hHHHhh
Q 022496 281 GIHAYA 286 (296)
Q Consensus 281 G~~~W~ 286 (296)
|+.+|.
T Consensus 86 G~~~W~ 91 (92)
T cd01532 86 GLQGWR 91 (92)
T ss_pred CHHHHc
Confidence 999996
No 35
>PRK07411 hypothetical protein; Validated
Probab=99.78 E-value=6e-19 Score=163.10 Aligned_cols=109 Identities=28% Similarity=0.494 Sum_probs=91.3
Q ss_pred hcCCCHHHHHHHhcCCCCCCCcEEEecCChHHHHhhCCCCceecccccccCCCC-CccCCCCCCCcEEEEeCCChhHHHH
Q 022496 185 LQDIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGP-DITVKFDPQKDTYVMCHHGMRSLQV 263 (296)
Q Consensus 185 ~~~is~~ev~~~L~~~~~~~~~~llDvR~~~ey~~ghIpgA~~ip~~~l~~~~~-~~~~~~~~~~~iv~~C~~G~rs~~a 263 (296)
...++.+++.++++.+. ++.++||||++.||..||||||+|+|+.++..... +....++++++||+||.+|.||..+
T Consensus 281 ~~~Is~~el~~~l~~~~--~~~vlIDVR~~~E~~~ghIpGAiniP~~~l~~~~~~~~l~~l~~d~~IVvyC~~G~RS~~a 358 (390)
T PRK07411 281 IPEMTVTELKALLDSGA--DDFVLIDVRNPNEYEIARIPGSVLVPLPDIENGPGVEKVKELLNGHRLIAHCKMGGRSAKA 358 (390)
T ss_pred cCccCHHHHHHHHhCCC--CCeEEEECCCHHHhccCcCCCCEEccHHHhhcccchHHHhhcCCCCeEEEECCCCHHHHHH
Confidence 35688889888886531 25689999999999999999999999988754211 1123356899999999999999999
Q ss_pred HHHHHHcCCCceEEccchHHHhhhccCCCCCCC
Q 022496 264 AQWLQTQGFRRVFNVSGGIHAYATKVDPSIPTY 296 (296)
Q Consensus 264 a~~L~~~G~~~v~~l~GG~~~W~~~~~~~~~~~ 296 (296)
+..|+.+||++ +.|.||+.+|.++.+|++|.|
T Consensus 359 a~~L~~~G~~~-~~l~GG~~~W~~~~~p~~p~y 390 (390)
T PRK07411 359 LGILKEAGIEG-TNVKGGITAWSREVDPSVPQY 390 (390)
T ss_pred HHHHHHcCCCe-EEecchHHHHHHhcCCCCCCC
Confidence 99999999985 579999999999999999998
No 36
>PRK05320 rhodanese superfamily protein; Provisional
Probab=99.78 E-value=4.8e-19 Score=154.44 Aligned_cols=106 Identities=19% Similarity=0.339 Sum_probs=86.1
Q ss_pred cCCCHHHHHHHhcCCCC--CCCcEEEecCChHHHHhhCCCCceecccccccCCCCCccCC--CCCCCcEEEEeCCChhHH
Q 022496 186 QDIQPDELHKKMQDPNF--HKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVK--FDPQKDTYVMCHHGMRSL 261 (296)
Q Consensus 186 ~~is~~ev~~~L~~~~~--~~~~~llDvR~~~ey~~ghIpgA~~ip~~~l~~~~~~~~~~--~~~~~~iv~~C~~G~rs~ 261 (296)
..+++.++.++++++.- +++.++||||++.||+.||||||+|+|+.+|.++...+... ..++++||+||.+|.||.
T Consensus 110 ~~is~~el~~~l~~~~~~~~~~~vlIDVR~~~E~~~Ghi~GAiniPl~~f~~~~~~l~~~~~~~kdk~IvvyC~~G~Rs~ 189 (257)
T PRK05320 110 PSVDAATLKRWLDQGHDDAGRPVVMLDTRNAFEVDVGTFDGALDYRIDKFTEFPEALAAHRADLAGKTVVSFCTGGIRCE 189 (257)
T ss_pred ceeCHHHHHHHHhccccccCCCeEEEECCCHHHHccCccCCCEeCChhHhhhhHHHHHhhhhhcCCCeEEEECCCCHHHH
Confidence 45788888888765311 12478999999999999999999999998876543322211 127899999999999999
Q ss_pred HHHHHHHHcCCCceEEccchHHHhhhccCC
Q 022496 262 QVAQWLQTQGFRRVFNVSGGIHAYATKVDP 291 (296)
Q Consensus 262 ~aa~~L~~~G~~~v~~l~GG~~~W~~~~~~ 291 (296)
.|+.+|++.||+||+.|.||+.+|.++.+.
T Consensus 190 ~Aa~~L~~~Gf~~V~~L~GGi~~w~~~~~~ 219 (257)
T PRK05320 190 KAAIHMQEVGIDNVYQLEGGILKYFEEVGG 219 (257)
T ss_pred HHHHHHHHcCCcceEEeccCHHHHHHhCCC
Confidence 999999999999999999999999987653
No 37
>TIGR03865 PQQ_CXXCW PQQ-dependent catabolism-associated CXXCW motif protein. Members of this protein family have a CXXXCW motif, consistent with a possible role in redox cofactor binding. This protein family shows strong relationships by phylogenetic profiling and conserved gene neighborhoods with a transport system for alcohols metabolized by PQQ-dependent enzymes.
Probab=99.77 E-value=7.6e-19 Score=143.20 Aligned_cols=103 Identities=16% Similarity=0.194 Sum_probs=80.0
Q ss_pred hcCCCHHHHHHHhcCCCCCCCcEEEecCChH----HHHhh---------CCCCceeccccc---ccCCCCC-cc------
Q 022496 185 LQDIQPDELHKKMQDPNFHKEAQLIDVREPE----EVALS---------SLPGFQVLPLRQ---FGSWGPD-IT------ 241 (296)
Q Consensus 185 ~~~is~~ev~~~L~~~~~~~~~~llDvR~~~----ey~~g---------hIpgA~~ip~~~---l~~~~~~-~~------ 241 (296)
...++.+++.+.+.++ +..+||||++. ||..| |||||+|+|+.. +...... +.
T Consensus 35 ~~~vs~~el~~~l~~~----~~~lIDVR~~~~~~~e~~~G~~~~~~~~~HIPGAv~ip~~~~~~l~~~~~~~~~~~l~~~ 110 (162)
T TIGR03865 35 ARVLDTEAAQALLARG----PVALIDVYPRPPKPKNLLEGTVWRDEPRLNIPGSLWLPNTGYGNLAPAWQAYFRRGLERA 110 (162)
T ss_pred ccccCHHHHHHHHhCC----CcEEEECCCCccccccccccceeccccCCCCCCcEEecccCCCCCCCchhHHHHHHHHHh
Confidence 4678999999999764 57899999875 45444 999999999643 2221100 10
Q ss_pred CCCCCCCcEEEEeCCCh-hHHHHHHHHHHcCCCceEEccchHHHhhhccCC
Q 022496 242 VKFDPQKDTYVMCHHGM-RSLQVAQWLQTQGFRRVFNVSGGIHAYATKVDP 291 (296)
Q Consensus 242 ~~~~~~~~iv~~C~~G~-rs~~aa~~L~~~G~~~v~~l~GG~~~W~~~~~~ 291 (296)
...+++++||+||.+|. +|..+++.|+.+||+||++|+|||.+|..+..|
T Consensus 111 ~~~~~d~~IVvYC~~G~~~S~~aa~~L~~~G~~~V~~l~GG~~aW~~aG~P 161 (162)
T TIGR03865 111 TGGDKDRPLVFYCLADCWMSWNAAKRALAYGYSNVYWYPDGTDGWQAAGLP 161 (162)
T ss_pred cCCCCCCEEEEEECCCCHHHHHHHHHHHhcCCcceEEecCCHHHHHHcCCC
Confidence 11268999999999996 899999999999999999999999999987654
No 38
>PRK10287 thiosulfate:cyanide sulfurtransferase; Provisional
Probab=99.77 E-value=6.5e-19 Score=132.68 Aligned_cols=80 Identities=25% Similarity=0.383 Sum_probs=69.4
Q ss_pred CcEEEecCChHHHHhhCCCCceecccccccCCCCCccCCCCCCCcEEEEeCCChhHHHHHHHHHHcCCCceEEccchHHH
Q 022496 205 EAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKFDPQKDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGIHA 284 (296)
Q Consensus 205 ~~~llDvR~~~ey~~ghIpgA~~ip~~~l~~~~~~~~~~~~~~~~iv~~C~~G~rs~~aa~~L~~~G~~~v~~l~GG~~~ 284 (296)
+-.+||+|++.||..||||||+|+|+.++......+. .+++++||+||.+|.||..++..|.++||++|++ .||+.+
T Consensus 20 ~~~lIDvR~~~ef~~ghIpGAiniP~~~l~~~l~~l~--~~~~~~IVlyC~~G~rS~~aa~~L~~~G~~~v~~-~GG~~~ 96 (104)
T PRK10287 20 AEHWIDVRVPEQYQQEHVQGAINIPLKEVKERIATAV--PDKNDTVKLYCNAGRQSGQAKEILSEMGYTHAEN-AGGLKD 96 (104)
T ss_pred CCEEEECCCHHHHhcCCCCccEECCHHHHHHHHHhcC--CCCCCeEEEEeCCChHHHHHHHHHHHcCCCeEEe-cCCHHH
Confidence 5579999999999999999999999988765433332 2567899999999999999999999999999987 699999
Q ss_pred hhh
Q 022496 285 YAT 287 (296)
Q Consensus 285 W~~ 287 (296)
|..
T Consensus 97 ~~~ 99 (104)
T PRK10287 97 IAM 99 (104)
T ss_pred Hhh
Confidence 974
No 39
>PF00581 Rhodanese: Rhodanese-like domain This Prosite entry represents a subset of this family.; InterPro: IPR001763 Rhodanese, a sulphurtransferase involved in cyanide detoxification (see IPR001307 from INTERPRO) shares evolutionary relationship with a large family of proteins [], including Cdc25 phosphatase catalytic domain. non-catalytic domains of eukaryotic dual-specificity MAPK-phosphatases. non-catalytic domains of yeast PTP-type MAPK-phosphatases. non-catalytic domains of yeast Ubp4, Ubp5, Ubp7. non-catalytic domains of mammalian Ubp-Y. Drosophila heat shock protein HSP-67BB. several bacterial cold-shock and phage shock proteins. plant senescence associated proteins. catalytic and non-catalytic domains of rhodanese (see IPR001307 from INTERPRO). Rhodanese has an internal duplication. This domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases [].; PDB: 2J6P_D 2FSX_A 1UAR_A 1OKG_A 1GMX_A 1GN0_A 3NTD_B 3NTA_B 3NT6_A 1C25_A ....
Probab=99.76 E-value=5.5e-19 Score=135.10 Aligned_cols=96 Identities=31% Similarity=0.569 Sum_probs=77.4
Q ss_pred CHHHHHHHhcCCCCCCCcEEEecCChHHHHhhCCCCceecccccccCCC------------CCccCCCCCCCcEEEEeCC
Q 022496 189 QPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWG------------PDITVKFDPQKDTYVMCHH 256 (296)
Q Consensus 189 s~~ev~~~L~~~~~~~~~~llDvR~~~ey~~ghIpgA~~ip~~~l~~~~------------~~~~~~~~~~~~iv~~C~~ 256 (296)
+++++.+.+.+ ....+||+|++.+|..||||||+|+|+..+.... ......++++++||+||.+
T Consensus 1 s~~el~~~l~~----~~~~liD~R~~~~~~~~hI~ga~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~yc~~ 76 (113)
T PF00581_consen 1 SPEELKEMLEN----ESVLLIDVRSPEEYERGHIPGAVNIPFPSLDPDEPSLSEDKLDEFLKELGKKIDKDKDIVFYCSS 76 (113)
T ss_dssp -HHHHHHHHTT----TTEEEEEESSHHHHHHSBETTEEEEEGGGGSSSSSBCHHHHHHHHHHHHTHGSTTTSEEEEEESS
T ss_pred CHHHHHhhhhC----CCeEEEEeCCHHHHHcCCCCCCccccccccccccccccccccccccccccccccccccceeeeec
Confidence 46788888843 4889999999999999999999999996651110 0111235788999999999
Q ss_pred ChhHHHHHHH-----HHHcCCCceEEccchHHHhhhc
Q 022496 257 GMRSLQVAQW-----LQTQGFRRVFNVSGGIHAYATK 288 (296)
Q Consensus 257 G~rs~~aa~~-----L~~~G~~~v~~l~GG~~~W~~~ 288 (296)
|.++..++.. |..+||++|++|+|||.+|.++
T Consensus 77 ~~~~~~~~~~~~~~~l~~~g~~~v~~l~GG~~~w~~~ 113 (113)
T PF00581_consen 77 GWRSGSAAAARVAWILKKLGFKNVYILDGGFEAWKAE 113 (113)
T ss_dssp SCHHHHHHHHHHHHHHHHTTTSSEEEETTHHHHHHHH
T ss_pred ccccchhHHHHHHHHHHHcCCCCEEEecChHHHHhcC
Confidence 9999888777 8889999999999999999863
No 40
>PRK00142 putative rhodanese-related sulfurtransferase; Provisional
Probab=99.76 E-value=1.3e-18 Score=155.91 Aligned_cols=102 Identities=21% Similarity=0.489 Sum_probs=87.0
Q ss_pred cCCCHHHHHHHhcCCCCCCCcEEEecCChHHHHhhCCCCceecccccccCCCCCcc--CCCCCCCcEEEEeCCChhHHHH
Q 022496 186 QDIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDIT--VKFDPQKDTYVMCHHGMRSLQV 263 (296)
Q Consensus 186 ~~is~~ev~~~L~~~~~~~~~~llDvR~~~ey~~ghIpgA~~ip~~~l~~~~~~~~--~~~~~~~~iv~~C~~G~rs~~a 263 (296)
..++++++.+.+.+ ++.++||||++.||..||||||+|+|+..|.+....+. ....++++||+||.+|.||..+
T Consensus 112 ~~is~~el~~~l~~----~~~vlIDVR~~~E~~~GhI~GAi~ip~~~~~~~~~~l~~~~~~~kdk~IvvyC~~G~Rs~~a 187 (314)
T PRK00142 112 TYLKPKEVNELLDD----PDVVFIDMRNDYEYEIGHFENAIEPDIETFREFPPWVEENLDPLKDKKVVMYCTGGIRCEKA 187 (314)
T ss_pred cccCHHHHHHHhcC----CCeEEEECCCHHHHhcCcCCCCEeCCHHHhhhhHHHHHHhcCCCCcCeEEEECCCCcHHHHH
Confidence 56888999888876 36899999999999999999999999998865322211 1235889999999999999999
Q ss_pred HHHHHHcCCCceEEccchHHHhhhccCC
Q 022496 264 AQWLQTQGFRRVFNVSGGIHAYATKVDP 291 (296)
Q Consensus 264 a~~L~~~G~~~v~~l~GG~~~W~~~~~~ 291 (296)
+.+|+.+||+||++|+|||.+|.+..++
T Consensus 188 a~~L~~~Gf~~V~~L~GGi~~w~~~~~~ 215 (314)
T PRK00142 188 SAWMKHEGFKEVYQLEGGIITYGEDPET 215 (314)
T ss_pred HHHHHHcCCCcEEEecchHHHHHHhhcc
Confidence 9999999999999999999999987664
No 41
>cd01531 Acr2p Eukaryotic arsenate resistance proteins are members of the Rhodanese Homology Domain superfamily. Included in this CD is the Saccharomyces cerevisiae arsenate reductase protein, Acr2p, and other yeast and plant homologs.
Probab=99.76 E-value=6.4e-19 Score=135.43 Aligned_cols=99 Identities=18% Similarity=0.283 Sum_probs=79.6
Q ss_pred cCCCHHHHHHHhcCCCCCCCcEEEecCChHHHHhhCCCCceecccccccCCCCCccCCC--CCCCcEEEEeC-CChhHHH
Q 022496 186 QDIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKF--DPQKDTYVMCH-HGMRSLQ 262 (296)
Q Consensus 186 ~~is~~ev~~~L~~~~~~~~~~llDvR~~~ey~~ghIpgA~~ip~~~l~~~~~~~~~~~--~~~~~iv~~C~-~G~rs~~ 262 (296)
+.++.+++.+++..+. +...+||||++ ||..||||||+|+|+..+......+.... +++++|||||. +|.||..
T Consensus 2 ~~is~~~l~~~~~~~~--~~~~iiDvR~~-e~~~~hi~gA~~ip~~~l~~~~~~~~~~~~~~~~~~iv~yC~~~~~r~~~ 78 (113)
T cd01531 2 SYISPAQLKGWIRNGR--PPFQVVDVRDE-DYAGGHIKGSWHYPSTRFKAQLNQLVQLLSGSKKDTVVFHCALSQVRGPS 78 (113)
T ss_pred CcCCHHHHHHHHHcCC--CCEEEEEcCCc-ccCCCcCCCCEecCHHHHhhCHHHHHHHHhcCCCCeEEEEeecCCcchHH
Confidence 3477888888886531 24679999999 99999999999999998765443332222 56789999998 7789999
Q ss_pred HHHHHHH--------cCCCceEEccchHHHhhh
Q 022496 263 VAQWLQT--------QGFRRVFNVSGGIHAYAT 287 (296)
Q Consensus 263 aa~~L~~--------~G~~~v~~l~GG~~~W~~ 287 (296)
++..|.+ .||.||++|+||+.+|..
T Consensus 79 aa~~l~~~~~~~~~~~G~~~v~~l~gG~~~w~~ 111 (113)
T cd01531 79 AARKFLRYLDEEDLETSKFEVYVLHGGFNAWES 111 (113)
T ss_pred HHHHHHHHHHHhccccCCCeEEEEcChHHHHHh
Confidence 9888754 499999999999999986
No 42
>PRK03002 prsA peptidylprolyl isomerase; Reviewed
Probab=99.76 E-value=1.1e-18 Score=154.98 Aligned_cols=102 Identities=26% Similarity=0.540 Sum_probs=88.6
Q ss_pred ceEEEeeEeeccchHHHHHHHHHHHhcCCccHHHHHHhhCCCC-cccCCcccccccCCCCcHHHHHHHhcCCCCcee-ce
Q 022496 88 REILVQHLLVKEDDLNLLSELQRRVSQGREDLSDLAVEHSICP-SKGEGGMLGWVRKGQLVPEFEEVAFTTPLNKVA-RC 165 (296)
Q Consensus 88 ~~~~~~~Il~~~~~~~~a~~i~~~l~~~g~~F~~la~~~S~d~-~~~~gG~lg~~~~~~l~~~~~~~~~~l~~G~vs-pv 165 (296)
++++++||+++.+ +.|+.++.+|+ +|.+|+++|++||.|+ ++.+||++||+..+.++|+|.++++.|++|++| ||
T Consensus 135 ~~~~~~~Ilv~~~--~~A~~i~~~l~-~G~~F~~lA~~~S~d~~s~~~gGdlg~~~~~~l~p~~~~a~~~L~~GevS~pI 211 (285)
T PRK03002 135 PEIKASHILVSDE--NEAKEIKKKLD-AGASFEELAKQESQDLLSKEKGGDLGYFNSGRMAPEFETAAYKLKVGQISNPV 211 (285)
T ss_pred cceEEEEEEECCH--HHHHHHHHHHH-CCCCHHHHHHHhCCCcchhhcCCccceeccccCCHHHHHHHHcCCCCCcCCcE
Confidence 4589999999954 45999999996 9999999999999997 678999999999999999999999999999999 79
Q ss_pred eecCcceEEEeehhhhhhhhcCCCHHHHHHHh
Q 022496 166 KTKFGWHLLQVLSEREASLLQDIQPDELHKKM 197 (296)
Q Consensus 166 ~~~~G~~Ii~v~~~~~~~~~~~is~~ev~~~L 197 (296)
++++||||+++.+++.. .+.+++++.+
T Consensus 212 ~t~~G~hIikv~~~~~~-----~~~e~vk~~I 238 (285)
T PRK03002 212 KSPNGYHIIKLTDKKDL-----KPYDEVKDSI 238 (285)
T ss_pred EECCEEEEEEEeecCCC-----CCHHHHHHHH
Confidence 99999999999987543 3344444444
No 43
>cd00158 RHOD Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.
Probab=99.75 E-value=1.7e-18 Score=126.64 Aligned_cols=81 Identities=36% Similarity=0.617 Sum_probs=72.0
Q ss_pred CCcEEEecCChHHHHhhCCCCceecccccccCCCCCccCCCCCCCcEEEEeCCChhHHHHHHHHHHcCCCceEEccchHH
Q 022496 204 KEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKFDPQKDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGIH 283 (296)
Q Consensus 204 ~~~~llDvR~~~ey~~ghIpgA~~ip~~~l~~~~~~~~~~~~~~~~iv~~C~~G~rs~~aa~~L~~~G~~~v~~l~GG~~ 283 (296)
++..+||+|++.+|..||||||+|+|+..+.... .....+++++||+||.+|.+|..++..|+..||.+|++|+||+.
T Consensus 9 ~~~~iiD~R~~~~~~~~~i~ga~~~~~~~~~~~~--~~~~~~~~~~vv~~c~~~~~a~~~~~~l~~~G~~~v~~l~gG~~ 86 (89)
T cd00158 9 EDAVLLDVREPEEYAAGHIPGAINIPLSELEERA--ALLELDKDKPIVVYCRSGNRSARAAKLLRKAGGTNVYNLEGGML 86 (89)
T ss_pred CCeEEEECCCHHHHhccccCCCEecchHHHhhHH--HhhccCCCCeEEEEeCCCchHHHHHHHHHHhCcccEEEecCChh
Confidence 4789999999999999999999999998865531 12345789999999999999999999999999999999999999
Q ss_pred Hhh
Q 022496 284 AYA 286 (296)
Q Consensus 284 ~W~ 286 (296)
+|.
T Consensus 87 ~w~ 89 (89)
T cd00158 87 AWK 89 (89)
T ss_pred hcC
Confidence 995
No 44
>PRK04405 prsA peptidylprolyl isomerase; Provisional
Probab=99.75 E-value=3.6e-18 Score=152.39 Aligned_cols=92 Identities=22% Similarity=0.389 Sum_probs=82.0
Q ss_pred ceEEEeeEeeccchHHHHHHHHHHHhcCCccHHHHHHhhCCCC-cccCCccccccc--CCCCcHHHHHHHhcCCCCce-e
Q 022496 88 REILVQHLLVKEDDLNLLSELQRRVSQGREDLSDLAVEHSICP-SKGEGGMLGWVR--KGQLVPEFEEVAFTTPLNKV-A 163 (296)
Q Consensus 88 ~~~~~~~Il~~~~~~~~a~~i~~~l~~~g~~F~~la~~~S~d~-~~~~gG~lg~~~--~~~l~~~~~~~~~~l~~G~v-s 163 (296)
++++++||+++++ +.|++++++|+ +|++|+++|++||.|+ ++.+||+|||+. .++++|+|.++++.|++|++ |
T Consensus 143 ~~~~v~hIlv~~~--~~A~~v~~~l~-~G~~F~~lA~~~S~d~~~~~~GGdlG~~~~~~~~l~~~f~~a~~~L~~Geiss 219 (298)
T PRK04405 143 PKVTVQHILVSKK--STAETVIKKLK-DGKDFAKLAKKYSTDTATKNKGGKLSAFDSTDTTLDSTFKTAAFKLKNGEYTT 219 (298)
T ss_pred hhEEEEEEEecCh--HHHHHHHHHHH-CCCCHHHHHHHhCCCcchhhcCCcCcccccCCCCCCHHHHHHHHcCCCCCccC
Confidence 6799999999854 55999999996 8999999999999997 678999999885 46899999999999999999 4
Q ss_pred -ceeecCcceEEEeehhhhh
Q 022496 164 -RCKTKFGWHLLQVLSEREA 182 (296)
Q Consensus 164 -pv~~~~G~~Ii~v~~~~~~ 182 (296)
||++.+||||+++.++...
T Consensus 220 ~pv~t~~GyhIikv~~~~~~ 239 (298)
T PRK04405 220 TPVKTTYGYEVIKMIKHPAK 239 (298)
T ss_pred CCEEeCCeEEEEEEeecCCC
Confidence 8999999999999986543
No 45
>COG2897 SseA Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=99.74 E-value=5.4e-18 Score=148.45 Aligned_cols=99 Identities=22% Similarity=0.310 Sum_probs=84.2
Q ss_pred CCHHHHHHHhcCCCCCCCcEEEecCChHHHHh----------hCCCCceecccccccCCCCCc---------c--CCCCC
Q 022496 188 IQPDELHKKMQDPNFHKEAQLIDVREPEEVAL----------SSLPGFQVLPLRQFGSWGPDI---------T--VKFDP 246 (296)
Q Consensus 188 is~~ev~~~L~~~~~~~~~~llDvR~~~ey~~----------ghIpgA~~ip~~~l~~~~~~~---------~--~~~~~ 246 (296)
.+.+.+...+... ...+||+|++.+|.. ||||||+|+|+.++.+....+ . ..+++
T Consensus 158 ~~~~~~~~~~~~~----~~~liDaR~~~rf~G~~~ep~~~~~GHIPGAiNipw~~~~~~~~~~~~~~~~~~l~~~~gi~~ 233 (285)
T COG2897 158 VDATLVADALEVP----AVLLIDARSPERFRGKEPEPRDGKAGHIPGAINIPWTDLVDDGGLFKSPEEIARLYADAGIDP 233 (285)
T ss_pred CCHHHHHHHhcCC----CeEEEecCCHHHhCCCCCCCCCCCCCCCCCCcCcCHHHHhcCCCccCcHHHHHHHHHhcCCCC
Confidence 5556677777663 667999999999988 999999999999988732211 1 25789
Q ss_pred CCcEEEEeCCChhHHHHHHHHHHcCCCceEEccchHHHhhhccC
Q 022496 247 QKDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGIHAYATKVD 290 (296)
Q Consensus 247 ~~~iv~~C~~G~rs~~aa~~L~~~G~~~v~~l~GG~~~W~~~~~ 290 (296)
+++||+||++|.||+..+..|+.+|+.++++|+|||.+|.+..+
T Consensus 234 ~~~vI~yCgsG~~As~~~~al~~lg~~~~~lYdGSWsEWg~~~~ 277 (285)
T COG2897 234 DKEVIVYCGSGVRASVTWLALAELGGPNNRLYDGSWSEWGSDPD 277 (285)
T ss_pred CCCEEEEcCCchHHHHHHHHHHHhCCCCcccccChHHHhhcCCC
Confidence 99999999999999999999999999999999999999998766
No 46
>cd01535 4RHOD_Repeat_4 Member of the Rhodanese Homology Domain superfamily, repeat 4. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 4th repeat which, in general, contains the putative catalytic Cys residue.
Probab=99.74 E-value=3e-18 Score=137.19 Aligned_cols=84 Identities=18% Similarity=0.224 Sum_probs=74.3
Q ss_pred CCcEEEecCChHHHHhhCCCCceecccccccCCCCCccCCCCCCCcEEEEeCCChhHHHHHHHHHHcCCCceEEccchHH
Q 022496 204 KEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKFDPQKDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGIH 283 (296)
Q Consensus 204 ~~~~llDvR~~~ey~~ghIpgA~~ip~~~l~~~~~~~~~~~~~~~~iv~~C~~G~rs~~aa~~L~~~G~~~v~~l~GG~~ 283 (296)
.+..+||||++.+|..||||||+|+|...|... ...++.+++|||||.+|.+|..++..|+..||++|++|+||+.
T Consensus 10 ~~~~ivDvR~~~e~~~gHIpgAi~~~~~~l~~~----l~~l~~~~~vVv~c~~g~~a~~aa~~L~~~G~~~v~~L~GG~~ 85 (145)
T cd01535 10 GQTAVVDVTASANYVKRHIPGAWWVLRAQLAQA----LEKLPAAERYVLTCGSSLLARFAAADLAALTVKPVFVLEGGTA 85 (145)
T ss_pred CCeEEEECCCHHHHHcCCCCCceeCCHHHHHHH----HHhcCCCCCEEEEeCCChHHHHHHHHHHHcCCcCeEEecCcHH
Confidence 357899999999999999999999998887653 2335678999999999999999999999999999999999999
Q ss_pred HhhhccCC
Q 022496 284 AYATKVDP 291 (296)
Q Consensus 284 ~W~~~~~~ 291 (296)
+|.....|
T Consensus 86 aW~~~g~p 93 (145)
T cd01535 86 AWIAAGLP 93 (145)
T ss_pred HHHHCCCC
Confidence 99987554
No 47
>KOG3259 consensus Peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=1.2e-17 Score=127.82 Aligned_cols=92 Identities=32% Similarity=0.549 Sum_probs=82.5
Q ss_pred CCCceEEEeeEeeccc-------------------hHHHHHHHHHHHhcCCccHHHHHHhhCCCCcccCCcccccccCCC
Q 022496 85 GGDREILVQHLLVKED-------------------DLNLLSELQRRVSQGREDLSDLAVEHSICPSKGEGGMLGWVRKGQ 145 (296)
Q Consensus 85 ~~~~~~~~~~Il~~~~-------------------~~~~a~~i~~~l~~~g~~F~~la~~~S~d~~~~~gG~lg~~~~~~ 145 (296)
..+.+|+++||||+-. |..+++.+.+.|+++..+|.+||+++|++.++..||+||||.+++
T Consensus 50 ~~p~~Vr~sHlLVKH~~SRrpsSwr~~~it~skeeA~~llk~~~~~l~~g~~~f~elA~q~SdCSSaKRGGDLG~fgrgq 129 (163)
T KOG3259|consen 50 GEPARVRCSHLLVKHKGSRRPSSWRSENITRSKEEALDLLKGYHEDLKSGSGDFEELAKQRSDCSSAKRGGDLGFFGRGQ 129 (163)
T ss_pred CCccceeEEEEEEccccCCCCcccccccchhhHHHHHHHHHHhHHHhhcCcccHHHHHHhhcChhhhccCCccccccccc
Confidence 4468899999999842 456677788889866679999999999999999999999999999
Q ss_pred CcHHHHHHHhcCCCCcee-ceeecCcceEEEe
Q 022496 146 LVPEFEEVAFTTPLNKVA-RCKTKFGWHLLQV 176 (296)
Q Consensus 146 l~~~~~~~~~~l~~G~vs-pv~~~~G~~Ii~v 176 (296)
|-++|++++|+|++|++| +|.|+.|+|||+.
T Consensus 130 Mqk~FEdaafaL~~ge~SgiV~t~SG~HiI~R 161 (163)
T KOG3259|consen 130 MQKPFEDAAFALKVGEMSGIVDTDSGVHIIYR 161 (163)
T ss_pred ccccchhhhhhcccccccCceecCCceEEEEe
Confidence 999999999999999999 7999999999974
No 48
>cd01445 TST_Repeats Thiosulfate sulfurtransferases (TST) contain 2 copies of the Rhodanese Homology Domain. Only the second repeat contains the catalytically active Cys residue. The role of the 1st repeat is uncertain, but believed to be involved in protein interaction. This CD aligns the 1st and 2nd repeats.
Probab=99.73 E-value=1.6e-17 Score=131.99 Aligned_cols=99 Identities=17% Similarity=0.207 Sum_probs=78.1
Q ss_pred CCHHHHHHHhcCCCCCCCcEEEecCCh--------HHHHh------------hCCCCceecccccccCCCCC---cc---
Q 022496 188 IQPDELHKKMQDPNFHKEAQLIDVREP--------EEVAL------------SSLPGFQVLPLRQFGSWGPD---IT--- 241 (296)
Q Consensus 188 is~~ev~~~L~~~~~~~~~~llDvR~~--------~ey~~------------ghIpgA~~ip~~~l~~~~~~---~~--- 241 (296)
++.+++.+.+.....+++..+||+|.. .+|.. ||||||+|+|+..+...... ..
T Consensus 1 vs~e~l~~~l~~~~~~~~~~iiD~r~~~~~~~~~~~~y~~~~~~~~~~~~~~GHIPgAv~~~~~~~~~~~~~~~~~~p~~ 80 (138)
T cd01445 1 KSTEQLAENLEAGKVGKGFQLLDARAQSPGTREARGEYLETQPEPDAVGLDSGHIPGASFFDFEECLDEAGFEESMEPSE 80 (138)
T ss_pred CCHHHHHHHhhccccCCCeEEEEccCCCccCcchhhhhcccCCCCCcCCCcCCcCCCCEeeCHHHhhCcCCCCCCCCCCH
Confidence 356778887763211246899999976 88988 99999999998876432211 11
Q ss_pred ---------CCCCCCCcEEEEeCC---ChhHHHHHHHHHHcCCCceEEccchHHHhh
Q 022496 242 ---------VKFDPQKDTYVMCHH---GMRSLQVAQWLQTQGFRRVFNVSGGIHAYA 286 (296)
Q Consensus 242 ---------~~~~~~~~iv~~C~~---G~rs~~aa~~L~~~G~~~v~~l~GG~~~W~ 286 (296)
.+++++++||+||.+ |.+|..+++.|+.+||+||++|+||+.+|.
T Consensus 81 ~~~~~~~~~~GI~~~~~vVvY~~~~~~g~~A~r~~~~l~~~G~~~v~ildGG~~~W~ 137 (138)
T cd01445 81 AEFAAMFEAKGIDLDKHLIATDGDDLGGFTACHIALAARLCGHPDVAILDGGFFEWF 137 (138)
T ss_pred HHHHHHHHHcCCCCCCeEEEECCCCCcchHHHHHHHHHHHcCCCCeEEeCCCHHHhh
Confidence 146789999999986 789999999999999999999999999996
No 49
>cd01443 Cdc25_Acr2p Cdc25 enzymes are members of the Rhodanese Homology Domain (RHOD) superfamily. Also included in this CD are eukaryotic arsenate resistance proteins such as Saccharomyces cerevisiae Acr2p and similar proteins. Cdc25 phosphatases activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. The Cdc25 and Acr2p RHOD domains have the signature motif (H/YCxxxxxR).
Probab=99.73 E-value=2.5e-18 Score=132.13 Aligned_cols=100 Identities=22% Similarity=0.363 Sum_probs=75.6
Q ss_pred cCCCHHHHHHHhcCCC--CCCCcEEEecCChHHHHhhCCCCceecccccccCCCCCccCCC--CCCCcEEEEeCC-ChhH
Q 022496 186 QDIQPDELHKKMQDPN--FHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKF--DPQKDTYVMCHH-GMRS 260 (296)
Q Consensus 186 ~~is~~ev~~~L~~~~--~~~~~~llDvR~~~ey~~ghIpgA~~ip~~~l~~~~~~~~~~~--~~~~~iv~~C~~-G~rs 260 (296)
..++++++.+++.++. ..++..+||||++ ||..||||||+|+|+..+..+...+...+ .+.++||+||.+ |.||
T Consensus 2 ~~is~~el~~~l~~~~~~~~~~~~iiDvR~~-ef~~ghipgAi~ip~~~~~~~~~~~~~~~~~~~~~~iv~~C~~~g~rs 80 (113)
T cd01443 2 KYISPEELVALLENSDSNAGKDFVVVDLRRD-DYEGGHIKGSINLPAQSCYQTLPQVYALFSLAGVKLAIFYCGSSQGRG 80 (113)
T ss_pred cccCHHHHHHHHhCCccccCCcEEEEECCch-hcCCCcccCceecchhHHHHHHHHHHHHhhhcCCCEEEEECCCCCccc
Confidence 3478889999887631 0024689999999 99999999999999988765432222212 356799999996 6899
Q ss_pred HHHHHHHHH----cCC--CceEEccchHHHhh
Q 022496 261 LQVAQWLQT----QGF--RRVFNVSGGIHAYA 286 (296)
Q Consensus 261 ~~aa~~L~~----~G~--~~v~~l~GG~~~W~ 286 (296)
..++.+|.. .|| .++++|+||+.+|.
T Consensus 81 ~~a~~~l~~~l~~~G~~~~~v~~l~GG~~~w~ 112 (113)
T cd01443 81 PRAARWFADYLRKVGESLPKSYILTGGIKAWY 112 (113)
T ss_pred HHHHHHHHHHHhccCCCCCeEEEECChhhhhc
Confidence 888877554 465 78999999999996
No 50
>PRK10770 peptidyl-prolyl cis-trans isomerase SurA; Provisional
Probab=99.73 E-value=6.9e-18 Score=158.03 Aligned_cols=115 Identities=18% Similarity=0.296 Sum_probs=95.8
Q ss_pred ccCchhhcccccCCCCCCCCCCCceEEEeeEeeccc----------hHHHHHHHHHHHhcCCccHHHHHHhhCCCCcccC
Q 022496 65 SFTSPKAASFSSGTEGSSPGGGDREILVQHLLVKED----------DLNLLSELQRRVSQGREDLSDLAVEHSICPSKGE 134 (296)
Q Consensus 65 ~~~~~e~~~~~~~~~~i~~~~~~~~~~~~~Il~~~~----------~~~~a~~i~~~l~~~g~~F~~la~~~S~d~~~~~ 134 (296)
.+++.|...|..... ..+....+++++||+++.+ ++++|++|+.+|+ +|.+|+++|+.||+|+++.+
T Consensus 133 ~vs~~ei~~~~~~~~--~~~~~~~~~~~~~I~i~~~~~~s~~~~~~~~~~a~~l~~~l~-~g~~F~~lA~~yS~~~~a~~ 209 (413)
T PRK10770 133 TILPQEVDSLAKQIG--NQNDASTELNLSHILIPLPENPTQDQVDEAESQARSIVDQAR-NGADFGKLAIAYSADQQALK 209 (413)
T ss_pred CCCHHHHHHHHHHHH--hhccccceEEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHH-CCCCHHHHHHHhCCCccccc
Confidence 455555544432211 2233458899999999733 4678999999996 89999999999999999999
Q ss_pred CcccccccCCCCcHHHHHHHhcCCCCcee-ceeecCcceEEEeehhhhh
Q 022496 135 GGMLGWVRKGQLVPEFEEVAFTTPLNKVA-RCKTKFGWHLLQVLSEREA 182 (296)
Q Consensus 135 gG~lg~~~~~~l~~~~~~~~~~l~~G~vs-pv~~~~G~~Ii~v~~~~~~ 182 (296)
||+|||+..++|+|+|.+++++|++|++| |+++.+||||+++.++++.
T Consensus 210 gGdlg~~~~~~l~~~~~~~~~~l~~G~is~Pi~t~~GyhIikl~~~~~~ 258 (413)
T PRK10770 210 GGQMGWGRIQELPGLFAQALSTAKKGDIVGPIRSGVGFHILKVNDLRGE 258 (413)
T ss_pred CCcCCccccccccHHHHHHHHhCCCCCCCCcEECCCceEEEEEeeeccc
Confidence 99999999999999999999999999999 8999999999999997753
No 51
>PLN02723 3-mercaptopyruvate sulfurtransferase
Probab=99.73 E-value=1.1e-17 Score=151.16 Aligned_cols=99 Identities=19% Similarity=0.254 Sum_probs=81.6
Q ss_pred CCHHHHHHHhcCCCCCCCcEEEecCChHHH-----------HhhCCCCceecccccccCCCCCcc-----------CCCC
Q 022496 188 IQPDELHKKMQDPNFHKEAQLIDVREPEEV-----------ALSSLPGFQVLPLRQFGSWGPDIT-----------VKFD 245 (296)
Q Consensus 188 is~~ev~~~L~~~~~~~~~~llDvR~~~ey-----------~~ghIpgA~~ip~~~l~~~~~~~~-----------~~~~ 245 (296)
++.+++...+.+ ++..+||+|++.|| ..||||||+|+|+.++.+..+.+. .+++
T Consensus 192 ~~~~~v~~~~~~----~~~~iiD~R~~~ef~G~~~~~~~~~~~GHIPgAvnip~~~~~~~~~~~~~~~el~~~~~~~gi~ 267 (320)
T PLN02723 192 WTLEQVKKNIED----KTYQHIDARSKARFDGAAPEPRKGIRSGHIPGSKCVPFPQMLDSSQTLLPAEELKKRFEQEGIS 267 (320)
T ss_pred ecHHHHHHhhcC----CCeEEEECCCcccccCCCCCCCCCCcCCcCCCCcccCHHHhcCCCCCCCCHHHHHHHHHhcCCC
Confidence 567788877765 35789999999998 469999999999987655322111 1467
Q ss_pred CCCcEEEEeCCChhHHHHHHHHHHcCCCceEEccchHHHhhhccC
Q 022496 246 PQKDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGIHAYATKVD 290 (296)
Q Consensus 246 ~~~~iv~~C~~G~rs~~aa~~L~~~G~~~v~~l~GG~~~W~~~~~ 290 (296)
++++||+||.+|.||..++..|+.+||+||++|+|||.+|....+
T Consensus 268 ~~~~iv~yC~sG~~A~~~~~~L~~~G~~~v~~YdGs~~eW~~~~~ 312 (320)
T PLN02723 268 LDSPIVASCGTGVTACILALGLHRLGKTDVPVYDGSWTEWGALPD 312 (320)
T ss_pred CCCCEEEECCcHHHHHHHHHHHHHcCCCCeeEeCCCHHHHhcCCC
Confidence 899999999999999999999999999999999999999997543
No 52
>PRK02998 prsA peptidylprolyl isomerase; Reviewed
Probab=99.72 E-value=2.1e-17 Score=146.74 Aligned_cols=91 Identities=35% Similarity=0.566 Sum_probs=83.8
Q ss_pred ceEEEeeEeeccchHHHHHHHHHHHhcCCccHHHHHHhhCCCC-cccCCcccccccCCCCcHHHHHHHhcCCCCcee-ce
Q 022496 88 REILVQHLLVKEDDLNLLSELQRRVSQGREDLSDLAVEHSICP-SKGEGGMLGWVRKGQLVPEFEEVAFTTPLNKVA-RC 165 (296)
Q Consensus 88 ~~~~~~~Il~~~~~~~~a~~i~~~l~~~g~~F~~la~~~S~d~-~~~~gG~lg~~~~~~l~~~~~~~~~~l~~G~vs-pv 165 (296)
++++++||+++.+ +.|++++++|+ +|.+|+++|++||.|+ ++.+||++||+..++++|+|.+++|.|++|++| ||
T Consensus 133 ~~~~v~~Ilv~~e--~~A~~i~~~l~-~G~~F~~lA~~~S~d~~s~~~gG~lg~~~~~~l~~~~~~a~~~Lk~GevS~pi 209 (283)
T PRK02998 133 PEMKVSHILVKDE--KTAKEVKEKVN-NGEDFAALAKQYSEDTGSKEQGGEISGFAPGQTVKEFEEAAYKLDAGQVSEPV 209 (283)
T ss_pred cceEEEEEEeCCH--HHHHHHHHHHH-CCCCHHHHHHHhCCCcchhhcCCcCCCcCCCcchHHHHHHHHcCCCCCcCCce
Confidence 4599999999954 45999999996 9999999999999997 778999999999999999999999999999999 79
Q ss_pred eecCcceEEEeehhhh
Q 022496 166 KTKFGWHLLQVLSERE 181 (296)
Q Consensus 166 ~~~~G~~Ii~v~~~~~ 181 (296)
++++||||+++.++..
T Consensus 210 ~t~~G~hIikv~~~~~ 225 (283)
T PRK02998 210 KTTYGYHIIKVTDKKE 225 (283)
T ss_pred EECCEEEEEEEeccCC
Confidence 9999999999998754
No 53
>PRK03095 prsA peptidylprolyl isomerase; Reviewed
Probab=99.71 E-value=3.8e-17 Score=145.39 Aligned_cols=90 Identities=31% Similarity=0.571 Sum_probs=83.6
Q ss_pred eEEEeeEeeccchHHHHHHHHHHHhcCCccHHHHHHhhCCCC-cccCCcccccccCCCCcHHHHHHHhcCCCCcee-cee
Q 022496 89 EILVQHLLVKEDDLNLLSELQRRVSQGREDLSDLAVEHSICP-SKGEGGMLGWVRKGQLVPEFEEVAFTTPLNKVA-RCK 166 (296)
Q Consensus 89 ~~~~~~Il~~~~~~~~a~~i~~~l~~~g~~F~~la~~~S~d~-~~~~gG~lg~~~~~~l~~~~~~~~~~l~~G~vs-pv~ 166 (296)
+++++||+++.++ .|++++++|+ +|.+|+++|++||.|+ ++.+||++||++.++++|+|.++++.|++|++| |++
T Consensus 132 ~v~~~hIlv~~~~--~A~~i~~~l~-~G~~F~~lA~~yS~d~~s~~~gG~lg~~~~~~L~~~~~~al~~L~~GevS~pi~ 208 (287)
T PRK03095 132 EIKASHILVKDEA--TAKKVKEELG-QGKSFEELAKQYSEDTGSKEKGGDLGFFGAGKMVKEFEDAAYKLKKDEVSEPVK 208 (287)
T ss_pred cEEEEEEEeCCHH--HHHHHHHHHH-CCCCHHHHHHHhCCCccccccCCcCceeccccccHHHHHHHHhCCCCCcCCceE
Confidence 4999999999654 4899999996 8899999999999997 778999999999999999999999999999999 799
Q ss_pred ecCcceEEEeehhhh
Q 022496 167 TKFGWHLLQVLSERE 181 (296)
Q Consensus 167 ~~~G~~Ii~v~~~~~ 181 (296)
+++||||+++.++++
T Consensus 209 t~~G~hIikv~~~~~ 223 (287)
T PRK03095 209 SQFGYHIIKVTDIKE 223 (287)
T ss_pred ECCEEEEEEEeeecC
Confidence 999999999999875
No 54
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=99.71 E-value=1.6e-17 Score=153.48 Aligned_cols=99 Identities=29% Similarity=0.402 Sum_probs=85.2
Q ss_pred cCCCHHHHHHHhcCCCCCCCcEEEecCChHHHHhhCCCCceecccccccCCCCCccCCCCCCCcEEEEeCCChhHHHHHH
Q 022496 186 QDIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKFDPQKDTYVMCHHGMRSLQVAQ 265 (296)
Q Consensus 186 ~~is~~ev~~~L~~~~~~~~~~llDvR~~~ey~~ghIpgA~~ip~~~l~~~~~~~~~~~~~~~~iv~~C~~G~rs~~aa~ 265 (296)
..++.+++.+.+.+ +..+||+|++.||..||||||+|+|+..+..+...+. .+++++||+||.+|.||..+++
T Consensus 3 ~~is~~el~~~l~~-----~~~ivDvR~~~e~~~ghIpgAi~ip~~~l~~~~~~~~--~~~~~~IvvyC~~G~rs~~aa~ 75 (376)
T PRK08762 3 REISPAEARARAAQ-----GAVLIDVREAHERASGQAEGALRIPRGFLELRIETHL--PDRDREIVLICASGTRSAHAAA 75 (376)
T ss_pred ceeCHHHHHHHHhC-----CCEEEECCCHHHHhCCcCCCCEECCHHHHHHHHhhhc--CCCCCeEEEEcCCCcHHHHHHH
Confidence 45788889888864 4789999999999999999999999988765433221 2689999999999999999999
Q ss_pred HHHHcCCCceEEccchHHHhhhccCC
Q 022496 266 WLQTQGFRRVFNVSGGIHAYATKVDP 291 (296)
Q Consensus 266 ~L~~~G~~~v~~l~GG~~~W~~~~~~ 291 (296)
.|+.+||+||++|+||+.+|.....|
T Consensus 76 ~L~~~G~~~v~~l~GG~~~W~~~g~p 101 (376)
T PRK08762 76 TLRELGYTRVASVAGGFSAWKDAGLP 101 (376)
T ss_pred HHHHcCCCceEeecCcHHHHHhcCCc
Confidence 99999999999999999999977554
No 55
>KOG3258 consensus Parvulin-like peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.69 E-value=6.8e-17 Score=117.26 Aligned_cols=91 Identities=29% Similarity=0.603 Sum_probs=80.0
Q ss_pred CCCceEEEeeEeeccchHHHHHHHHHHHhcCCccHHHHHHhhCCCCcccCCcccccccCCCCcHHHHHHHhcCCCCc---
Q 022496 85 GGDREILVQHLLVKEDDLNLLSELQRRVSQGREDLSDLAVEHSICPSKGEGGMLGWVRKGQLVPEFEEVAFTTPLNK--- 161 (296)
Q Consensus 85 ~~~~~~~~~~Il~~~~~~~~a~~i~~~l~~~g~~F~~la~~~S~d~~~~~gG~lg~~~~~~l~~~~~~~~~~l~~G~--- 161 (296)
.....+.+||||-...-+ +.+.+++|+ +|..|.++|.+||+|+ +.+||+|||++++.|+-.|.+++|+|+++.
T Consensus 35 gggtaVKvRHiLCEKqGK--i~EA~eKLk-~G~~F~evAA~YSEdk-ar~GGDLGW~~RG~MvGPFQdaAFalpvs~~~~ 110 (133)
T KOG3258|consen 35 GGGTAVKVRHILCEKQGK--INEAMEKLK-SGMKFNEVAAQYSEDK-ARQGGDLGWMTRGSMVGPFQDAAFALPVSTVDK 110 (133)
T ss_pred CCcceEEEEEeeehhhch--HHHHHHHHH-cccchHHHHHHhccCc-cccCCcccceeccccccchhhhhhcccccccCC
Confidence 455789999999975544 899999996 9999999999999998 788999999999999999999999999883
Q ss_pred ---ee-ceeecCcceEEEeehh
Q 022496 162 ---VA-RCKTKFGWHLLQVLSE 179 (296)
Q Consensus 162 ---vs-pv~~~~G~~Ii~v~~~ 179 (296)
.+ ||+|.+|||||.+..+
T Consensus 111 pv~TdpP~KtkfGYHiImvEGr 132 (133)
T KOG3258|consen 111 PVYTDPPVKTKFGYHIIMVEGR 132 (133)
T ss_pred ccccCCCcccccceEEEEeccc
Confidence 34 4899999999988653
No 56
>PRK00059 prsA peptidylprolyl isomerase; Provisional
Probab=99.67 E-value=4.7e-17 Score=148.38 Aligned_cols=106 Identities=26% Similarity=0.414 Sum_probs=91.3
Q ss_pred CceEEEeeEeeccchHHHHHHHHHHHhcCCccHHHHHHhhCCCC-cccCCcccccccC--CCCcHHHHHHHhcCCCCcee
Q 022496 87 DREILVQHLLVKEDDLNLLSELQRRVSQGREDLSDLAVEHSICP-SKGEGGMLGWVRK--GQLVPEFEEVAFTTPLNKVA 163 (296)
Q Consensus 87 ~~~~~~~~Il~~~~~~~~a~~i~~~l~~~g~~F~~la~~~S~d~-~~~~gG~lg~~~~--~~l~~~~~~~~~~l~~G~vs 163 (296)
+.+++++||+++.+ +.|++++++++ .|.+|+++|++||.++ ++.+||++||++. +.++|+|.++++.|++|++|
T Consensus 194 p~~~~v~~I~~~~~--~~a~~~~~~l~-~g~~F~~la~~~s~~~~~~~~~g~lg~~~~~~~~l~~~~~~a~~~l~~Gevs 270 (336)
T PRK00059 194 PNTMHLAHILVKTE--DEAKKVKKRLD-KGEDFAKVAKEVSQDPGSKDKGGDLGDVPYSDSGYDKEFMDGAKALKEGEIS 270 (336)
T ss_pred cceEEEEEEEecCH--HHHHHHHHHHH-CCCCHHHHHHHhCCCcchhhcCCcccccccccCccCHHHHHHHHcCCCCCcC
Confidence 47899999999965 45999999996 8899999999999996 7889999999998 78999999999999999999
Q ss_pred -ceeecCcceEEEeehhhhhhhhcCCCHHHHHHHhc
Q 022496 164 -RCKTKFGWHLLQVLSEREASLLQDIQPDELHKKMQ 198 (296)
Q Consensus 164 -pv~~~~G~~Ii~v~~~~~~~~~~~is~~ev~~~L~ 198 (296)
||.++.||||+++.++.+. ...+.+++++.+.
T Consensus 271 ~pi~~~~G~~i~~v~~~~~~---~~~~~~~vk~~i~ 303 (336)
T PRK00059 271 APVKTQFGYHIIKAIKKKEY---PVKPFDSVKEDIK 303 (336)
T ss_pred ccEecCCeEEEEEEEeeccC---CCCCHHHHHHHHH
Confidence 7999999999999998764 2344555555543
No 57
>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional
Probab=99.67 E-value=1.9e-16 Score=153.55 Aligned_cols=100 Identities=17% Similarity=0.246 Sum_probs=82.2
Q ss_pred CCCHHHHHHHhcCCCCCCCcEEEecCChHHHH--------hhCCCCceecccccccCCCCCc---------c--CCCCCC
Q 022496 187 DIQPDELHKKMQDPNFHKEAQLIDVREPEEVA--------LSSLPGFQVLPLRQFGSWGPDI---------T--VKFDPQ 247 (296)
Q Consensus 187 ~is~~ev~~~L~~~~~~~~~~llDvR~~~ey~--------~ghIpgA~~ip~~~l~~~~~~~---------~--~~~~~~ 247 (296)
.++.+++.+.+.+ ++..+||+|++.||. .||||||+|+|+.++.+..+.+ . .+++++
T Consensus 148 ~v~~e~v~~~l~~----~~~~iIDaR~~~ef~G~~~~~~r~GHIPGAvnip~~~~~~~~~~lk~~~el~~~~~~~Gi~~~ 223 (610)
T PRK09629 148 TATREYLQSRLGA----ADLAIWDARAPTEYSGEKVVAAKGGHIPGAVNFEWTAGMDKARNLRIRQDMPEILRDLGITPD 223 (610)
T ss_pred cccHHHHHHhhCC----CCcEEEECCCccccCCcccccccCCCCCCCeecCHHHhcCCCCCCCCHHHHHHHHHHcCCCCC
Confidence 3677888888865 367899999999994 6999999999997654322111 1 146789
Q ss_pred CcEEEEeCCChhHHHHHHHHHHcCCCceEEccchHHHhhhccC
Q 022496 248 KDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGIHAYATKVD 290 (296)
Q Consensus 248 ~~iv~~C~~G~rs~~aa~~L~~~G~~~v~~l~GG~~~W~~~~~ 290 (296)
++||+||.+|.||..++..|+.+||+||++|+|||.+|..+.+
T Consensus 224 ~~VVvYC~sG~rAa~~~~~L~~lG~~~V~~YdGsw~eW~~~~~ 266 (610)
T PRK09629 224 KEVITHCQTHHRSGFTYLVAKALGYPRVKAYAGSWGEWGNHPD 266 (610)
T ss_pred CCEEEECCCChHHHHHHHHHHHcCCCCcEEeCCCHHHHhCCCC
Confidence 9999999999999999999999999999999999999997643
No 58
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=99.66 E-value=1.7e-16 Score=141.02 Aligned_cols=96 Identities=16% Similarity=0.239 Sum_probs=77.8
Q ss_pred CCHHHHHHHhcCCCCCCCcEEEecCChHHHH-----------hhCCCCceecccccccCCCCCcc-----------CCCC
Q 022496 188 IQPDELHKKMQDPNFHKEAQLIDVREPEEVA-----------LSSLPGFQVLPLRQFGSWGPDIT-----------VKFD 245 (296)
Q Consensus 188 is~~ev~~~L~~~~~~~~~~llDvR~~~ey~-----------~ghIpgA~~ip~~~l~~~~~~~~-----------~~~~ 245 (296)
.+.+++...+.. .+..+||+|++.||. .||||||+|+|+.++... +.+. .+++
T Consensus 155 ~~~~~v~~~~~~----~~~~llD~R~~~e~~G~~~~~~~~~~~GhIpgA~~i~~~~~~~~-~~~~~~~~l~~~~~~~g~~ 229 (281)
T PRK11493 155 VRLTDVLLASHE----KTAQIVDARPAARFNAEVDEPRPGLRRGHIPGALNVPWTELVRE-GELKTTDELDAIFFGRGVS 229 (281)
T ss_pred ecHHHHHHhhcC----CCcEEEeCCCccceeeeccCCCCCcccccCCCcCCCCHHHhcCC-CCcCCHHHHHHHHHhcCCC
Confidence 344555555544 257899999999995 699999999999887642 1111 1357
Q ss_pred CCCcEEEEeCCChhHHHHHHHHHHcCCCceEEccchHHHhhhc
Q 022496 246 PQKDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGIHAYATK 288 (296)
Q Consensus 246 ~~~~iv~~C~~G~rs~~aa~~L~~~G~~~v~~l~GG~~~W~~~ 288 (296)
++++||+||++|.||..++..|+.+||+||++|+|||.+|...
T Consensus 230 ~~~~ii~yC~~G~~A~~~~~~l~~~G~~~v~~y~Gs~~eW~~~ 272 (281)
T PRK11493 230 FDRPIIASCGSGVTAAVVVLALATLDVPNVKLYDGAWSEWGAR 272 (281)
T ss_pred CCCCEEEECCcHHHHHHHHHHHHHcCCCCceeeCCCHHHHccC
Confidence 8999999999999999999999999999999999999999964
No 59
>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase. The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.
Probab=99.66 E-value=7.2e-17 Score=144.22 Aligned_cols=86 Identities=36% Similarity=0.424 Sum_probs=68.1
Q ss_pred CcEEEecCChHHHHhhCCCCceecccccccCCC------------------------------CCccCCCCCCCcEEEEe
Q 022496 205 EAQLIDVREPEEVALSSLPGFQVLPLRQFGSWG------------------------------PDITVKFDPQKDTYVMC 254 (296)
Q Consensus 205 ~~~llDvR~~~ey~~ghIpgA~~ip~~~l~~~~------------------------------~~~~~~~~~~~~iv~~C 254 (296)
...+||||++.||..||||||+|+|+.+..+.. ..+....++++.||+||
T Consensus 2 ~~~liDVRsp~Ef~~ghipgAiniPl~~~~er~~vgt~ykq~g~~~A~~lg~~~v~~~l~~~i~~~~~~~~~~~~vvvyC 81 (311)
T TIGR03167 2 FDPLIDVRSPAEFAEGHLPGAINLPLLNDEERAEVGTLYKQVGPFAAIKLGLALVSPNLAAHVEQWRAFADGPPQPLLYC 81 (311)
T ss_pred CCEEEECCCHHHHhcCCCcCCEecccccchhhhhhhhhhhcccHHHHHHHhHhhhhHHHHHHHHHHHhhcCCCCcEEEEE
Confidence 457999999999999999999999996432110 01111234556699999
Q ss_pred C-CChhHHHHHHHHHHcCCCceEEccchHHHhhhccCC
Q 022496 255 H-HGMRSLQVAQWLQTQGFRRVFNVSGGIHAYATKVDP 291 (296)
Q Consensus 255 ~-~G~rs~~aa~~L~~~G~~~v~~l~GG~~~W~~~~~~ 291 (296)
. +|.||..++++|+.+|| +|++|+||+.+|...+.+
T Consensus 82 ~~gG~RS~~aa~~L~~~G~-~v~~L~GG~~aw~~~~~~ 118 (311)
T TIGR03167 82 WRGGMRSGSLAWLLAQIGF-RVPRLEGGYKAYRRFVID 118 (311)
T ss_pred CCCChHHHHHHHHHHHcCC-CEEEecChHHHHHHhhhh
Confidence 5 78999999999999999 699999999999987654
No 60
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=99.66 E-value=4.8e-16 Score=138.18 Aligned_cols=100 Identities=19% Similarity=0.264 Sum_probs=80.6
Q ss_pred CCCHHHHHHHhcCCCCCCCcEEEecCC----------hHHHHhhCCCCceecccccccCCCCC---cc------------
Q 022496 187 DIQPDELHKKMQDPNFHKEAQLIDVRE----------PEEVALSSLPGFQVLPLRQFGSWGPD---IT------------ 241 (296)
Q Consensus 187 ~is~~ev~~~L~~~~~~~~~~llDvR~----------~~ey~~ghIpgA~~ip~~~l~~~~~~---~~------------ 241 (296)
.++.+++.+.+.+ ++..+||+|+ +.+|..||||||+|+|+..+...... +.
T Consensus 6 lvs~~~l~~~l~~----~~~~iiD~R~~~~~~~~~~~~~~y~~GHIpGA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (281)
T PRK11493 6 FVAADWLAEHIDD----PEIQIIDARMAPPGQEDRDVAAEYRAGHIPGAVFFDIEALSDHTSPLPHMMPRPETFAVAMRE 81 (281)
T ss_pred ccCHHHHHHhcCC----CCeEEEEeeCCCCCccccchHHHHHhCcCCCCEEcCHHHhcCCCCCCCCCCCCHHHHHHHHHH
Confidence 4778888888876 3688999996 68899999999999998776542211 11
Q ss_pred CCCCCCCcEEEEeCCChh-HHHHHHHHHHcCCCceEEccchHHHhhhccC
Q 022496 242 VKFDPQKDTYVMCHHGMR-SLQVAQWLQTQGFRRVFNVSGGIHAYATKVD 290 (296)
Q Consensus 242 ~~~~~~~~iv~~C~~G~r-s~~aa~~L~~~G~~~v~~l~GG~~~W~~~~~ 290 (296)
.+++++++||+||.+|.+ +..+++.|...||+||++|+||+.+|..+..
T Consensus 82 ~Gi~~d~~VVvyc~~~~~~a~~~~~~l~~~G~~~v~~l~GG~~~W~~~g~ 131 (281)
T PRK11493 82 LGVNQDKHLVVYDEGNLFSAPRAWWMLRTFGVEKVSILAGGLAGWQRDDL 131 (281)
T ss_pred cCCCCCCEEEEECCCCCchHHHHHHHHHHhcCCcEEEcCCCHHHHHHcCC
Confidence 135789999999998775 6678899999999999999999999987644
No 61
>PRK12450 foldase protein PrsA; Reviewed
Probab=99.63 E-value=2.2e-16 Score=141.81 Aligned_cols=102 Identities=12% Similarity=0.117 Sum_probs=82.0
Q ss_pred ceEEEeeEeeccchHHHHHHHHHHHhcCCccHHHHHHhhCCCCcccCCccccccc-CCCCcHHHHHHHhcCCCCcee-ce
Q 022496 88 REILVQHLLVKEDDLNLLSELQRRVSQGREDLSDLAVEHSICPSKGEGGMLGWVR-KGQLVPEFEEVAFTTPLNKVA-RC 165 (296)
Q Consensus 88 ~~~~~~~Il~~~~~~~~a~~i~~~l~~~g~~F~~la~~~S~d~~~~~gG~lg~~~-~~~l~~~~~~~~~~l~~G~vs-pv 165 (296)
++++++||++. +++.|++++++|+..|++|+++|++||.|+ .+||++||.. .++|+|+|.+++|.|++|++| ||
T Consensus 147 ~~~~~~~I~~~--~~~~A~~i~~~l~~~G~dF~~lAk~~S~~~--~~~g~~~f~~~~~~l~~ef~~aa~~Lk~GevS~~i 222 (309)
T PRK12450 147 PTMTAEIMQFE--KEEDAKAALEAVKAEGADFAAIAKEKTIAA--DKKTTYTFDSGETTLPAEVVRAASGLKEGNRSEII 222 (309)
T ss_pred ccceeEEEEeC--CHHHHHHHHHHHHhcCCCHHHHHHHhCCCc--ccCCcccccCCCCCCCHHHHHHHHcCCCCCccccc
Confidence 46889999997 455699999999635899999999999985 4588999876 457999999999999999998 45
Q ss_pred ------eecCcceEEEeehhhhhhhhcCCCHHHHHHHh
Q 022496 166 ------KTKFGWHLLQVLSEREASLLQDIQPDELHKKM 197 (296)
Q Consensus 166 ------~~~~G~~Ii~v~~~~~~~~~~~is~~ev~~~L 197 (296)
++++|||||++.++... ..+.++++..+
T Consensus 223 ~~~~pv~t~~GyhIikl~~~~~~----~~~~~~~k~~i 256 (309)
T PRK12450 223 TALDPATSKRTYHIIKVTKKATK----KADWKAYQKRL 256 (309)
T ss_pred cCCCccccCCceEEEEEeccccc----CCCHHHHHHHH
Confidence 68999999999998642 23444444443
No 62
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=99.63 E-value=8.5e-16 Score=140.57 Aligned_cols=81 Identities=31% Similarity=0.521 Sum_probs=71.7
Q ss_pred CcEEEecCChHHHHhhCCCCceecccccccCCCCCccCCCCCCCcEEEEeCCChhHHHHHHHHHHcCCCceEEccchHHH
Q 022496 205 EAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKFDPQKDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGIHA 284 (296)
Q Consensus 205 ~~~llDvR~~~ey~~ghIpgA~~ip~~~l~~~~~~~~~~~~~~~~iv~~C~~G~rs~~aa~~L~~~G~~~v~~l~GG~~~ 284 (296)
...+||+|++.||..||||||+|+|+..+..... ...++++++||+||.+|.||..++..|+..||+||++|+||+.+
T Consensus 274 ~~~IIDVR~~~ef~~ghIpgAinip~~~l~~~~~--~~~~~~~~~IvvyC~~G~rS~~Aa~~L~~~G~~nV~~L~GGi~~ 351 (355)
T PRK05597 274 GVTLIDVREPSEFAAYSIPGAHNVPLSAIREGAN--PPSVSAGDEVVVYCAAGVRSAQAVAILERAGYTGMSSLDGGIEG 351 (355)
T ss_pred CCEEEECCCHHHHccCcCCCCEEeCHHHhhhccc--cccCCCCCeEEEEcCCCHHHHHHHHHHHHcCCCCEEEecCcHHH
Confidence 5689999999999999999999999988765321 12357889999999999999999999999999999999999999
Q ss_pred hhh
Q 022496 285 YAT 287 (296)
Q Consensus 285 W~~ 287 (296)
|.+
T Consensus 352 W~~ 354 (355)
T PRK05597 352 WLD 354 (355)
T ss_pred Hhh
Confidence 975
No 63
>PRK01326 prsA foldase protein PrsA; Reviewed
Probab=99.62 E-value=8e-16 Score=138.30 Aligned_cols=103 Identities=13% Similarity=0.204 Sum_probs=84.6
Q ss_pred ceEEEeeEeeccchHHHHHHHHHHHhcCCccHHHHHHhhCCCCcccCCcccccccC-CCCcHHHHHHHhcCCCCcee-ce
Q 022496 88 REILVQHLLVKEDDLNLLSELQRRVSQGREDLSDLAVEHSICPSKGEGGMLGWVRK-GQLVPEFEEVAFTTPLNKVA-RC 165 (296)
Q Consensus 88 ~~~~~~~Il~~~~~~~~a~~i~~~l~~~g~~F~~la~~~S~d~~~~~gG~lg~~~~-~~l~~~~~~~~~~l~~G~vs-pv 165 (296)
++++++||++. +++.|++++++|+++|++|+++|++||. ++.+||+|||+.. +.++++|.+++|.|++|++| ||
T Consensus 144 ~~~~~~~I~~~--~~~~A~~i~~~l~~~G~dF~~lA~~~S~--s~~~GGdlg~~~~~~~l~~~~~~a~~~Lk~GevS~pv 219 (310)
T PRK01326 144 PEVTAQIIRLD--NEDKAKSVLEEAKAEGADFAQIAKENTT--TKEKKGEYKFDSGSTNVPEQVKKAAFALDEDGVSDVI 219 (310)
T ss_pred ccccchhhhHh--hhHHHHHHHHHHHhCCCCHHHHHHHhCc--ccccCCcccccCCCCcccHHHHHHHHcCCCCCcCCce
Confidence 46899999887 4456999999996359999999999999 6789999999987 46889999999999999999 78
Q ss_pred ee------cCcceEEEeehhhhhhhhcCCCHHHHHHHhc
Q 022496 166 KT------KFGWHLLQVLSEREASLLQDIQPDELHKKMQ 198 (296)
Q Consensus 166 ~~------~~G~~Ii~v~~~~~~~~~~~is~~ev~~~L~ 198 (296)
++ .+|||||++.+++.. ..+.++++..+.
T Consensus 220 ~t~~~~~~~~GyhIikv~~~~~~----~~~~~evk~~i~ 254 (310)
T PRK01326 220 SVLDPTAYQSKYYIVKVTKKTEK----KSDWKDYKKRLK 254 (310)
T ss_pred ecCCCCcCCceEEEEEEeccCCC----CCCHHHHHHHHH
Confidence 87 689999999997642 234455544443
No 64
>PRK11784 tRNA 2-selenouridine synthase; Provisional
Probab=99.62 E-value=5.7e-16 Score=140.37 Aligned_cols=95 Identities=32% Similarity=0.489 Sum_probs=73.0
Q ss_pred HHHHHHHhcCCCCCCCcEEEecCChHHHHhhCCCCceecccccccCCC---------C--------------Cc------
Q 022496 190 PDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWG---------P--------------DI------ 240 (296)
Q Consensus 190 ~~ev~~~L~~~~~~~~~~llDvR~~~ey~~ghIpgA~~ip~~~l~~~~---------~--------------~~------ 240 (296)
..++.+.+. ++..+||||++.||..||||||+|+|+.+..+.. + .+
T Consensus 5 ~~~~~~~~~-----~~~~lIDVRsp~Ef~~ghIpgAiniPl~~~~er~~vgt~Ykq~g~~~a~~lg~~lv~~~l~~~~~~ 79 (345)
T PRK11784 5 AQDFRALFL-----NDTPLIDVRSPIEFAEGHIPGAINLPLLNDEERAEVGTCYKQQGQFAAIALGHALVAGNIAAHREE 79 (345)
T ss_pred HHHHHHHHh-----CCCEEEECCCHHHHhcCCCCCeeeCCCCChhHHHhhchhhcccCHHHHHHhhhhhcchhHHHHHHH
Confidence 445555543 3679999999999999999999999996432100 0 00
Q ss_pred -cCCCC-CCCcEEEEeC-CChhHHHHHHHHHHcCCCceEEccchHHHhhhccC
Q 022496 241 -TVKFD-PQKDTYVMCH-HGMRSLQVAQWLQTQGFRRVFNVSGGIHAYATKVD 290 (296)
Q Consensus 241 -~~~~~-~~~~iv~~C~-~G~rs~~aa~~L~~~G~~~v~~l~GG~~~W~~~~~ 290 (296)
...++ ++++||+||. +|.||..++++|..+|| +|++|+||+.+|+..+.
T Consensus 80 ~~~~~~~~~~~ivvyC~rgG~RS~~aa~~L~~~G~-~v~~L~GG~~awr~~~~ 131 (345)
T PRK11784 80 AWADFPRANPRGLLYCWRGGLRSGSVQQWLKEAGI-DVPRLEGGYKAYRRFVI 131 (345)
T ss_pred HHHhcccCCCeEEEEECCCChHHHHHHHHHHHcCC-CcEEEcCCHHHHHHhhH
Confidence 01122 7899999995 88999999999999999 69999999999997554
No 65
>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional
Probab=99.61 E-value=2.3e-15 Score=146.07 Aligned_cols=101 Identities=17% Similarity=0.254 Sum_probs=82.3
Q ss_pred CCCHHHHHHHhcCCCCCCCcEEEecCChHHHHhhCCCCceecccccccCCC----CC---------cc--CCCCCCCcEE
Q 022496 187 DIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWG----PD---------IT--VKFDPQKDTY 251 (296)
Q Consensus 187 ~is~~ev~~~L~~~~~~~~~~llDvR~~~ey~~ghIpgA~~ip~~~l~~~~----~~---------~~--~~~~~~~~iv 251 (296)
.++.+++.+.+++. +.++||+|++.+|..||||||+|+|+....... +. .+ .+++++++||
T Consensus 10 lIs~~eL~~~l~~~----~vvIIDvR~~~eY~~GHIPGAv~i~~~~~~~~~~~~~~~lp~~~~l~~~l~~lGI~~d~~VV 85 (610)
T PRK09629 10 VIEPNDLLERLDAP----ELILVDLTSSARYEAGHIRGARFVDPKRTQLGKPPAPGLLPDTADLEQLFGELGHNPDAVYV 85 (610)
T ss_pred eecHHHHHHHhcCC----CEEEEECCChHHHHhCCCCCcEEcChhHhhccCCCCCCCCCCHHHHHHHHHHcCCCCCCEEE
Confidence 48889999999763 688999999999999999999999976431110 00 11 1357899999
Q ss_pred EEeCCC-hhHHHHHHHHHHcCCCceEEccchHHHhhhccCC
Q 022496 252 VMCHHG-MRSLQVAQWLQTQGFRRVFNVSGGIHAYATKVDP 291 (296)
Q Consensus 252 ~~C~~G-~rs~~aa~~L~~~G~~~v~~l~GG~~~W~~~~~~ 291 (296)
+||.+| .+|..+++.|+.+||++|++|+||+.+|..+..|
T Consensus 86 vYd~~g~~~A~R~~w~L~~~G~~~V~iLdGG~~aW~~ag~p 126 (610)
T PRK09629 86 VYDDEGGGWAGRFIWLLDVIGHSGYHYLDGGVLAWEAQALP 126 (610)
T ss_pred EECCCCCchHHHHHHHHHHcCCCCEEEcCCCHHHHHHcCCc
Confidence 999977 5888999999999999999999999999987654
No 66
>PLN02723 3-mercaptopyruvate sulfurtransferase
Probab=99.61 E-value=2.7e-15 Score=135.55 Aligned_cols=102 Identities=16% Similarity=0.311 Sum_probs=80.7
Q ss_pred cCCCHHHHHHHhcCCCCCCCcEEEecC--------C-hHHHHhhCCCCceecccccccCCCCCcc---------------
Q 022496 186 QDIQPDELHKKMQDPNFHKEAQLIDVR--------E-PEEVALSSLPGFQVLPLRQFGSWGPDIT--------------- 241 (296)
Q Consensus 186 ~~is~~ev~~~L~~~~~~~~~~llDvR--------~-~~ey~~ghIpgA~~ip~~~l~~~~~~~~--------------- 241 (296)
..++.+++...+.+ ++..|||+| + ..+|..||||||+|+|+..+........
T Consensus 22 ~lvs~~~L~~~l~~----~~~~IiDvr~~~~~~~r~~~~~y~~gHIPgAi~i~~~~~~~~~~~~~~~lp~~~~~~~~l~~ 97 (320)
T PLN02723 22 PVVSVDWLHANLRE----PDVKVLDASWYMPDEQRNPIQEYQVAHIPGALFFDLDGISDRTTDLPHMLPSEEAFAAAVSA 97 (320)
T ss_pred ceecHHHHHHHhcC----CCeEEEEeeccccCCCCchHHHHHhccCCCCeecCHHHhcCCCCCcCCCCCCHHHHHHHHHH
Confidence 34788899998865 368899996 3 3789999999999999887655322211
Q ss_pred CCCCCCCcEEEEeCCChh-HHHHHHHHHHcCCCceEEccchHHHhhhccCC
Q 022496 242 VKFDPQKDTYVMCHHGMR-SLQVAQWLQTQGFRRVFNVSGGIHAYATKVDP 291 (296)
Q Consensus 242 ~~~~~~~~iv~~C~~G~r-s~~aa~~L~~~G~~~v~~l~GG~~~W~~~~~~ 291 (296)
-++.++++|||||.+|.+ +..+++.|+.+||+||++|+||+.+|..+..|
T Consensus 98 ~Gi~~~~~VVvY~~~g~~~a~r~~~~L~~~G~~~V~~LdGG~~~W~~~G~p 148 (320)
T PLN02723 98 LGIENKDGVVVYDGKGIFSAARVWWMFRVFGHEKVWVLDGGLPKWRASGYD 148 (320)
T ss_pred cCCCCCCEEEEEcCCCcchHHHHHHHHHHcCCCceEEcCCCHHHHHHcCCC
Confidence 135688999999998864 56888999999999999999999999976543
No 67
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=99.57 E-value=3.9e-15 Score=136.56 Aligned_cols=92 Identities=28% Similarity=0.432 Sum_probs=75.4
Q ss_pred CCCHHHHHHHhcCCCCCCCcEEEecCChHHHHhhCCC---CceecccccccCCCC--CccCCCCCCCcEEEEeCCChhHH
Q 022496 187 DIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLP---GFQVLPLRQFGSWGP--DITVKFDPQKDTYVMCHHGMRSL 261 (296)
Q Consensus 187 ~is~~ev~~~L~~~~~~~~~~llDvR~~~ey~~ghIp---gA~~ip~~~l~~~~~--~~~~~~~~~~~iv~~C~~G~rs~ 261 (296)
.++.+++.+++.++ +..+||||++.||+.|||| ||+|||+.++.+... .....++++ +|||||++|.||.
T Consensus 272 ~~~~~el~~~l~~~----~~~lIDVR~~~E~~~ghI~~~~gAinIPl~~l~~~~~~~~~l~~~~~~-~Ivv~C~sG~RS~ 346 (370)
T PRK05600 272 RTDTTSLIDATLNG----SATLLDVREPHEVLLKDLPEGGASLKLPLSAITDDADILHALSPIDGD-NVVVYCASGIRSA 346 (370)
T ss_pred ccCHHHHHHHHhcC----CeEEEECCCHHHhhhccCCCCCccEeCcHHHhhcchhhhhhccccCCC-cEEEECCCChhHH
Confidence 46778888888763 4689999999999999998 699999998864310 112233455 9999999999999
Q ss_pred HHHHHHHHcCCCc-eEEccchHH
Q 022496 262 QVAQWLQTQGFRR-VFNVSGGIH 283 (296)
Q Consensus 262 ~aa~~L~~~G~~~-v~~l~GG~~ 283 (296)
.++..|+.+||++ |++|.||+.
T Consensus 347 ~Aa~~L~~~G~~~~v~~l~GG~~ 369 (370)
T PRK05600 347 DFIEKYSHLGHELTLHNLPGGVN 369 (370)
T ss_pred HHHHHHHHcCCCCceEEeccccC
Confidence 9999999999996 999999985
No 68
>COG1054 Predicted sulfurtransferase [General function prediction only]
Probab=99.57 E-value=1.4e-15 Score=131.17 Aligned_cols=161 Identities=18% Similarity=0.332 Sum_probs=117.7
Q ss_pred hHHHHHHHHHHHhcCCccHHHHHHhhCCCCcccCCcccccccCCCCcHHHHHHHhcCCCCc-eeceeecCcceEEEeehh
Q 022496 101 DLNLLSELQRRVSQGREDLSDLAVEHSICPSKGEGGMLGWVRKGQLVPEFEEVAFTTPLNK-VARCKTKFGWHLLQVLSE 179 (296)
Q Consensus 101 ~~~~a~~i~~~l~~~g~~F~~la~~~S~d~~~~~gG~lg~~~~~~l~~~~~~~~~~l~~G~-vspv~~~~G~~Ii~v~~~ 179 (296)
..+.++.+++.|. .-..|+++.-+.|..... .|. .|--.+.+.+-+|-..+ +.|-...
T Consensus 53 ~~e~~~~~~~~l~-a~~~f~~l~~K~s~~~~~-------pF~--r~kVk~kkEIV~lg~~ddv~p~~~v----------- 111 (308)
T COG1054 53 SAEAIEAYMAWLR-ADPGFADLRFKISEADEK-------PFW--RLKVKLKKEIVALGVEDDVDPLENV----------- 111 (308)
T ss_pred CHHHHHHHHHHHH-hCcccccceeeeccccCC-------Ccc--eEEEeehhhheecCCCCCcCccccc-----------
Confidence 3556888888886 666888888777664311 011 01111223333443333 4432111
Q ss_pred hhhhhhcCCCHHHHHHHhcCCCCCCCcEEEecCChHHHHhhCCCCceecccccccCCCCCccCCC--CCCCcEEEEeCCC
Q 022496 180 REASLLQDIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKF--DPQKDTYVMCHHG 257 (296)
Q Consensus 180 ~~~~~~~~is~~ev~~~L~~~~~~~~~~llDvR~~~ey~~ghIpgA~~ip~~~l~~~~~~~~~~~--~~~~~iv~~C~~G 257 (296)
-.-+++.++.+++.+ ++.++||.|+..||+.||..||++.+..+|.+.+.+..... -++++|+.||.+|
T Consensus 112 -----G~yl~p~~wn~~l~D----~~~vviDtRN~YE~~iG~F~gAv~p~~~tFrefP~~v~~~~~~~~~KkVvmyCTGG 182 (308)
T COG1054 112 -----GTYLSPKDWNELLSD----PDVVVIDTRNDYEVAIGHFEGAVEPDIETFREFPAWVEENLDLLKDKKVVMYCTGG 182 (308)
T ss_pred -----cCccCHHHHHHHhcC----CCeEEEEcCcceeEeeeeecCccCCChhhhhhhHHHHHHHHHhccCCcEEEEcCCc
Confidence 134788999999988 47999999999999999999999999999887655443322 3678999999999
Q ss_pred hhHHHHHHHHHHcCCCceEEccchHHHhhhccCC
Q 022496 258 MRSLQVAQWLQTQGFRRVFNVSGGIHAYATKVDP 291 (296)
Q Consensus 258 ~rs~~aa~~L~~~G~~~v~~l~GG~~~W~~~~~~ 291 (296)
.|...+..+|+..||++||.|+||+..|.+++.+
T Consensus 183 IRCEKas~~m~~~GF~eVyhL~GGIl~Y~e~~~~ 216 (308)
T COG1054 183 IRCEKASAWMKENGFKEVYHLEGGILKYLEDVGT 216 (308)
T ss_pred eeehhhHHHHHHhcchhhhcccchHHHHhhhcCc
Confidence 9999999999999999999999999999987665
No 69
>PRK10788 periplasmic folding chaperone; Provisional
Probab=99.57 E-value=7e-15 Score=144.46 Aligned_cols=94 Identities=17% Similarity=0.226 Sum_probs=84.6
Q ss_pred CCCceEEEeeEeeccchHHHHHHHHHHHhcCCccHHHHHHhhCCCC-cccCCcccccccCCCCcHHHHHHHhcCCCCcee
Q 022496 85 GGDREILVQHLLVKEDDLNLLSELQRRVSQGREDLSDLAVEHSICP-SKGEGGMLGWVRKGQLVPEFEEVAFTTPLNKVA 163 (296)
Q Consensus 85 ~~~~~~~~~~Il~~~~~~~~a~~i~~~l~~~g~~F~~la~~~S~d~-~~~~gG~lg~~~~~~l~~~~~~~~~~l~~G~vs 163 (296)
..+++++++||+++. ++.|++++++|+ +|++|+++|++||+|+ ++.+||+|||++.+.++++|.++++ +++|++|
T Consensus 266 ~~~e~~~~~~i~~~~--~~~A~~~~~~l~-~G~~F~~lA~~~s~d~~s~~~gGdlg~~~~~~~~~~~~~a~~-~~~G~vs 341 (623)
T PRK10788 266 TQPERKRYSIIQTKT--EAEAKAVLDELK-KGADFATLAKEKSTDIISARNGGDLGWLEPATTPDELKNAGL-KEKGQLS 341 (623)
T ss_pred CChhheeeeEEEECC--HHHHHHHHHHHh-CCCCHHHHHHHhCCCcchhhcCCcccccCCCCCChHHHHHhc-cCCCCcC
Confidence 345778999999984 555999999996 8999999999999997 8999999999999999999999988 5889999
Q ss_pred -ceeecCcceEEEeehhhhh
Q 022496 164 -RCKTKFGWHLLQVLSEREA 182 (296)
Q Consensus 164 -pv~~~~G~~Ii~v~~~~~~ 182 (296)
|+++.+||||+++.+..+.
T Consensus 342 ~pv~t~~G~~Iikv~~~~~~ 361 (623)
T PRK10788 342 GVIKSSVGFLIVRLDDIQPA 361 (623)
T ss_pred CcEEECCeEEEEEEEeeccC
Confidence 8999999999999987764
No 70
>cd01446 DSP_MapKP N-terminal regulatory rhodanese domain of dual specificity phosphatases (DSP), such as Mapk Phosphatase. This domain is believed to determine substrate specificity by binding the substrate, such as ERK2, and activating the C-terminal catalytic domain by inducing a conformational change. This domain has homology to the Rhodanese Homology Domain.
Probab=99.55 E-value=1.5e-14 Score=114.25 Aligned_cols=98 Identities=16% Similarity=0.086 Sum_probs=75.3
Q ss_pred CCHHHHHHHhcCCCCCCCcEEEecCChHHHHhhCCCCceecccccccCCC---C--------------CccCCCCCCCcE
Q 022496 188 IQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWG---P--------------DITVKFDPQKDT 250 (296)
Q Consensus 188 is~~ev~~~L~~~~~~~~~~llDvR~~~ey~~ghIpgA~~ip~~~l~~~~---~--------------~~~~~~~~~~~i 250 (296)
+++.++.+.++.. +++..+||+|.+.+|..||||||+|+|+..+.... . ..... .++++|
T Consensus 2 is~~~l~~~l~~~--~~~~~iiDvR~~~~~~~~hI~~ai~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~V 78 (132)
T cd01446 2 IDCAWLAALLREG--GERLLLLDCRPFLEYSSSHIRGAVNVCCPTILRRRLQGGKILLQQLLSCPEDRDRLRR-GESLAV 78 (132)
T ss_pred cCHHHHHHHHhcC--CCCEEEEECCCHHHHhhCcccCcEecChHHHHHHhhcccchhhhhhcCCHHHHHHHhc-CCCCeE
Confidence 6788888888753 13689999999999999999999999988643110 0 00011 157899
Q ss_pred EEEeCCChh---------HHHHHHHHHH--cCCCceEEccchHHHhhhc
Q 022496 251 YVMCHHGMR---------SLQVAQWLQT--QGFRRVFNVSGGIHAYATK 288 (296)
Q Consensus 251 v~~C~~G~r---------s~~aa~~L~~--~G~~~v~~l~GG~~~W~~~ 288 (296)
|+||.+|.+ +..++..|.. .|+.+|++|+||+.+|...
T Consensus 79 VvYd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~L~GG~~~w~~~ 127 (132)
T cd01446 79 VVYDESSSDRERLREDSTAESVLGKLLRKLQEGCSVYLLKGGFEQFSSE 127 (132)
T ss_pred EEEeCCCcchhhccccchHHHHHHHHHHhcCCCceEEEEcchHHHHHhh
Confidence 999998875 7777788877 4778999999999999874
No 71
>TIGR02925 cis_trans_EpsD peptidyl-prolyl cis-trans isomerase, EpsD family. Members of this family belong to the peptidyl-prolyl cis-trans isomerase family and are found in loci associated with exopolysaccharide biosynthesis. All members are encoded near a homolog of EpsH, as detected by TIGR02602.
Probab=99.52 E-value=3.9e-14 Score=122.58 Aligned_cols=112 Identities=15% Similarity=0.042 Sum_probs=90.0
Q ss_pred ccCchhh-cccccCCCCCCCCCCCceEEEeeEeeccchHHHHHHHHHHHhcCCccHHHHHHhhCCCCcccCCcccccccC
Q 022496 65 SFTSPKA-ASFSSGTEGSSPGGGDREILVQHLLVKEDDLNLLSELQRRVSQGREDLSDLAVEHSICPSKGEGGMLGWVRK 143 (296)
Q Consensus 65 ~~~~~e~-~~~~~~~~~i~~~~~~~~~~~~~Il~~~~~~~~a~~i~~~l~~~g~~F~~la~~~S~d~~~~~gG~lg~~~~ 143 (296)
.+++.|. +.|..+. .....+.+|+++||+++.+ ...+++++++++ +|.+|+++|..++.... ..+|.+||++.
T Consensus 116 ~vse~ev~~~Y~~~~---~~f~~~~~~~~~hIlv~~~-~~~a~~~~~~l~-~g~~f~~la~~~~~~~~-~~~~~~~~~~~ 189 (232)
T TIGR02925 116 KPSPEEAKSYFQEHP---QLFAERKLYNLQEIALPPD-MELLDELRAMVE-NGKPLEDILAWLKAKNV-PFNASSAARPA 189 (232)
T ss_pred CCCHHHHHHHHHhCH---HhcCCCceEEEEEEEecCC-hhHHHHHHHHHh-cCCCHHHHHHHhhhcCc-ccccccccCch
Confidence 3444443 4455443 2334568899999999853 345899999996 99999999999886533 45778999999
Q ss_pred CCCcHHHHHHHhcCCCCceeceeecCcceEEEeehhhhh
Q 022496 144 GQLVPEFEEVAFTTPLNKVARCKTKFGWHLLQVLSEREA 182 (296)
Q Consensus 144 ~~l~~~~~~~~~~l~~G~vspv~~~~G~~Ii~v~~~~~~ 182 (296)
++++|+|.++++.|++|+++|+++.+||||+++.++.+.
T Consensus 190 ~~l~~~~~~a~~~l~~G~is~v~s~~G~hiikv~~~~~~ 228 (232)
T TIGR02925 190 EQLPAEILAVLAKLKPGAPLVVQGPNNVLILVLADAQPA 228 (232)
T ss_pred hhCCHHHHHHHHhCCCCCeEEeecCCceEEEEEeccccC
Confidence 999999999999999999999999999999999887653
No 72
>KOG2017 consensus Molybdopterin synthase sulfurylase [Coenzyme transport and metabolism]
Probab=99.46 E-value=7.1e-14 Score=122.48 Aligned_cols=108 Identities=27% Similarity=0.491 Sum_probs=90.2
Q ss_pred cCCCHHHHHHHhcCCCCCCCcEEEecCChHHHHhhCCCCceecccccccCCCC-CccCCC-CCCCcEEEEeCCChhHHHH
Q 022496 186 QDIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGP-DITVKF-DPQKDTYVMCHHGMRSLQV 263 (296)
Q Consensus 186 ~~is~~ev~~~L~~~~~~~~~~llDvR~~~ey~~ghIpgA~~ip~~~l~~~~~-~~~~~~-~~~~~iv~~C~~G~rs~~a 263 (296)
..++..+.++.++++ +...++|||++.+|+.+|+|+|+|||+.++..... .+...+ ...++|+|.|+.|+.|..|
T Consensus 317 ~Rvsv~d~k~il~~~---~~h~llDvRp~~~~eI~~lP~avNIPL~~l~~~~~~~~~~~~~~~~~~I~ViCrrGNdSQ~A 393 (427)
T KOG2017|consen 317 ERVSVTDYKRILDSG---AKHLLLDVRPSHEYEICRLPEAVNIPLKELRSRSGKKLQGDLNTESKDIFVICRRGNDSQRA 393 (427)
T ss_pred hcccHHHHHHHHhcC---CCeEEEeccCcceEEEEecccccccchhhhhhhhhhhhcccccccCCCEEEEeCCCCchHHH
Confidence 457777888888875 57799999999999999999999999999876543 111122 3567899999999999999
Q ss_pred HHHHHHcCC-CceEEccchHHHhhhccCCCCCCC
Q 022496 264 AQWLQTQGF-RRVFNVSGGIHAYATKVDPSIPTY 296 (296)
Q Consensus 264 a~~L~~~G~-~~v~~l~GG~~~W~~~~~~~~~~~ 296 (296)
++.|++.++ .+|+.+.||+.+|...++|++|.|
T Consensus 394 v~~Lre~~~~~~vrDvigGl~~w~~~vd~~fP~Y 427 (427)
T KOG2017|consen 394 VRILREKFPDSSVRDVIGGLKAWAAKVDPNFPLY 427 (427)
T ss_pred HHHHHhhCCchhhhhhhhHHHHHHHhcCcCCCCC
Confidence 999998644 468889999999999999999988
No 73
>PRK01269 tRNA s(4)U8 sulfurtransferase; Provisional
Probab=99.35 E-value=1.7e-12 Score=123.44 Aligned_cols=73 Identities=26% Similarity=0.389 Sum_probs=65.1
Q ss_pred CCcEEEecCChHHHHhhCCCC----ceecccccccCCCCCccCCCCCCCcEEEEeCCChhHHHHHHHHHHcCCCceEEcc
Q 022496 204 KEAQLIDVREPEEVALSSLPG----FQVLPLRQFGSWGPDITVKFDPQKDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVS 279 (296)
Q Consensus 204 ~~~~llDvR~~~ey~~ghIpg----A~~ip~~~l~~~~~~~~~~~~~~~~iv~~C~~G~rs~~aa~~L~~~G~~~v~~l~ 279 (296)
++..+||||++.||..||||| |+|+|+..+... ...++++++||+||.+|.||..+|..|+.+||+||++|.
T Consensus 406 ~~~~lIDVR~~~E~~~~hI~g~~~~a~niP~~~l~~~----~~~l~~~~~iivyC~~G~rS~~aa~~L~~~G~~nv~~y~ 481 (482)
T PRK01269 406 PDDVIIDIRSPDEQEDKPLKLEGVEVKSLPFYKLSTQ----FGDLDQSKTYLLYCDRGVMSRLQALYLREQGFSNVKVYR 481 (482)
T ss_pred CCCEEEECCCHHHHhcCCCCCCCceEEECCHHHHHHH----HhhcCCCCeEEEECCCCHHHHHHHHHHHHcCCccEEecC
Confidence 467899999999999999999 999999988653 233578999999999999999999999999999999875
Q ss_pred c
Q 022496 280 G 280 (296)
Q Consensus 280 G 280 (296)
+
T Consensus 482 ~ 482 (482)
T PRK01269 482 P 482 (482)
T ss_pred C
Confidence 3
No 74
>COG2897 SseA Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=99.34 E-value=6.9e-12 Score=110.14 Aligned_cols=106 Identities=20% Similarity=0.179 Sum_probs=80.5
Q ss_pred CCCHHHHHHHhcCCCC-CCCcEEEecCCh--HHHHhhCCCCceecccccccCCCC----CccC-----------CCCCCC
Q 022496 187 DIQPDELHKKMQDPNF-HKEAQLIDVREP--EEVALSSLPGFQVLPLRQFGSWGP----DITV-----------KFDPQK 248 (296)
Q Consensus 187 ~is~~ev~~~L~~~~~-~~~~~llDvR~~--~ey~~ghIpgA~~ip~~~l~~~~~----~~~~-----------~~~~~~ 248 (296)
.++++.+.+.+..... ..+..+++++.. .+|..+|||||+++++........ .+.+ ++..+.
T Consensus 12 lVs~~wl~~~l~~~~~~~~d~~~~~~~~~~~~~Y~~~HIPGAv~~d~~~~~~~~~~~~~~lp~~e~fa~~~~~~GI~~d~ 91 (285)
T COG2897 12 LVSPDWLAENLDDPAVVIVDARIILPDPDDAEEYLEGHIPGAVFFDWEADLSDPVPLPHMLPSPEQFAKLLGELGIRNDD 91 (285)
T ss_pred EEcHHHHHhhccccccccCceEEEeCCcchHHHHHhccCCCCEecCHHHhhcCCCCCCCCCCCHHHHHHHHHHcCCCCCC
Confidence 4677777777765311 124555555555 899999999999999987655432 1111 467899
Q ss_pred cEEEEeC-CChhHHHHHHHHHHcCCCceEEccchHHHhhhccCCC
Q 022496 249 DTYVMCH-HGMRSLQVAQWLQTQGFRRVFNVSGGIHAYATKVDPS 292 (296)
Q Consensus 249 ~iv~~C~-~G~rs~~aa~~L~~~G~~~v~~l~GG~~~W~~~~~~~ 292 (296)
+||+|.. ++.-|+.+++.|+-+|++||++|+||+.+|..+..|.
T Consensus 92 tVVvYdd~~~~~A~ra~W~l~~~Gh~~V~iLdGG~~~W~~~g~p~ 136 (285)
T COG2897 92 TVVVYDDGGGFFAARAWWLLRYLGHENVRILDGGLPAWKAAGLPL 136 (285)
T ss_pred EEEEECCCCCeehHHHHHHHHHcCCCceEEecCCHHHHHHcCCCc
Confidence 9999996 5568889999999999999999999999999887763
No 75
>KOG3772 consensus M-phase inducer phosphatase [Cell cycle control, cell division, chromosome partitioning]
Probab=99.28 E-value=5.4e-12 Score=110.89 Aligned_cols=108 Identities=17% Similarity=0.168 Sum_probs=82.5
Q ss_pred hhhcCCCHHHHHHHhcCCCC--CCCcEEEecCChHHHHhhCCCCceecccccccCCCCCccCCCC---CCCcEEEEeC-C
Q 022496 183 SLLQDIQPDELHKKMQDPNF--HKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKFD---PQKDTYVMCH-H 256 (296)
Q Consensus 183 ~~~~~is~~ev~~~L~~~~~--~~~~~llDvR~~~ey~~ghIpgA~~ip~~~l~~~~~~~~~~~~---~~~~iv~~C~-~ 256 (296)
..++.|+++.+..++....- ...+++||+|-|.||.+|||+||+||+..+......-...... +...+||||. +
T Consensus 153 ~~~k~Is~etl~~ll~~~~~~~~~~~~iiDcR~pyEY~GGHIkgavnl~~~~~~~~~f~~~~~~~~~~~~~i~IFhCefS 232 (325)
T KOG3772|consen 153 QDLKYISPETLKGLLQGKFSDFFDKFIIIDCRYPYEYEGGHIKGAVNLYSKELLQDFFLLKDGVPSGSKRVILIFHCEFS 232 (325)
T ss_pred ccccccCHHHHHHHHHhccccceeeEEEEEeCCcccccCcccccceecccHhhhhhhhccccccccccCceeEEEEeeec
Confidence 44577999999999876322 2336789999999999999999999998876553221112222 3567999998 7
Q ss_pred ChhHHHHHHHHHH------------cCCCceEEccchHHHhhhccC
Q 022496 257 GMRSLQVAQWLQT------------QGFRRVFNVSGGIHAYATKVD 290 (296)
Q Consensus 257 G~rs~~aa~~L~~------------~G~~~v~~l~GG~~~W~~~~~ 290 (296)
..|...+|..|+. +-|..+|+|+||+..|.....
T Consensus 233 q~RGP~mA~~lr~iDR~r~~~~yp~l~ypE~yiL~gGYk~ff~~~~ 278 (325)
T KOG3772|consen 233 QERGPKMARHLRNIDRDRNSNDYPKLSYPELYILDGGYKEFFSNYP 278 (325)
T ss_pred cccCHHHHHHHHHhhhhhhcccCcccccchheeecccHHHHHHhcc
Confidence 7999999999994 366789999999999986544
No 76
>COG0760 SurA Parvulin-like peptidyl-prolyl isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.19 E-value=6.9e-12 Score=112.17 Aligned_cols=93 Identities=39% Similarity=0.675 Sum_probs=82.6
Q ss_pred ceEEEeeEeeccchHHHHHHHHHHHhcCC-----ccHHHHHHhhCCCCccc-CCcccccccCCCCcHHHHHHHhcCCCCc
Q 022496 88 REILVQHLLVKEDDLNLLSELQRRVSQGR-----EDLSDLAVEHSICPSKG-EGGMLGWVRKGQLVPEFEEVAFTTPLNK 161 (296)
Q Consensus 88 ~~~~~~~Il~~~~~~~~a~~i~~~l~~~g-----~~F~~la~~~S~d~~~~-~gG~lg~~~~~~l~~~~~~~~~~l~~G~ 161 (296)
++++.+||+++.++. +.+++.+++ .+ .+|+++|++||.|++.. .||++||...+.++|+|.++++.+++|+
T Consensus 167 ~~~~~~~i~~~~~~~--a~~~~~~~~-~~~~~~~~~f~~~a~~~s~~~~~~~~g~~~~~~~~~~~~p~f~~a~~~~~~g~ 243 (320)
T COG0760 167 TEVQARHILVKAEAK--AKEALALLK-KGVREAKADFAELAKKQSEDPSSKNGGGLLGWNKKGQLVPEFRKAAFILKVGE 243 (320)
T ss_pred HHHhhcccccCchHh--HHHHHHHHH-hccccccCCHHHHHHHcCCCcccccCCccccccCccccChHHHHHHHhccCcc
Confidence 789999999997666 777777775 44 89999999999998655 5788899999999999999999999999
Q ss_pred ee-ceeecCcceEEEeehhhhhh
Q 022496 162 VA-RCKTKFGWHLLQVLSEREAS 183 (296)
Q Consensus 162 vs-pv~~~~G~~Ii~v~~~~~~~ 183 (296)
++ |+++.+|||++++.++++..
T Consensus 244 ~~~pv~t~~g~~ii~v~~~~~~~ 266 (320)
T COG0760 244 VSAPVKTSFGYHIIKVEKKRDAK 266 (320)
T ss_pred cccccccchHHHHHHHHhhhhhh
Confidence 99 89999999999999888764
No 77
>KOG1529 consensus Mercaptopyruvate sulfurtransferase/thiosulfate sulfurtransferase [Defense mechanisms]
Probab=99.03 E-value=3.7e-10 Score=97.41 Aligned_cols=83 Identities=20% Similarity=0.228 Sum_probs=71.3
Q ss_pred CCcEEEecCChHHHH-----------hhCCCCceecccccccCCCCCcc-----------CCCCCCCcEEEEeCCChhHH
Q 022496 204 KEAQLIDVREPEEVA-----------LSSLPGFQVLPLRQFGSWGPDIT-----------VKFDPQKDTYVMCHHGMRSL 261 (296)
Q Consensus 204 ~~~~llDvR~~~ey~-----------~ghIpgA~~ip~~~l~~~~~~~~-----------~~~~~~~~iv~~C~~G~rs~ 261 (296)
++...+|.|...+|. .||||||+|+|+.++....+-+. ..+..++++|+.|+.|..+.
T Consensus 171 ~~~~~~DaRs~grF~Gt~p~~~~~~~ggHIpGa~n~P~~~~~~~~g~~k~~edl~~~f~~~~l~~~~p~~~sC~~Gisa~ 250 (286)
T KOG1529|consen 171 KNFQYLDARSKGRFDGTEPEPRSGATGGHIPGAINFPFDEVLDPDGFIKPAEDLKHLFAQKGLKLSKPVIVSCGTGISAS 250 (286)
T ss_pred ccceeeeccccccccccCCCCcccCcCccCCCcccCChHHhcccccccCCHHHHHHHHHhcCcccCCCEEEeeccchhHH
Confidence 468899999988885 48999999999998876543332 13556899999999999999
Q ss_pred HHHHHHHHcCCCceEEccchHHHhhh
Q 022496 262 QVAQWLQTQGFRRVFNVSGGIHAYAT 287 (296)
Q Consensus 262 ~aa~~L~~~G~~~v~~l~GG~~~W~~ 287 (296)
..+..|...| .+|.+|+|+|.+|.-
T Consensus 251 ~i~~al~r~g-~~~~lYdGS~~Ew~~ 275 (286)
T KOG1529|consen 251 IIALALERSG-PDAKLYDGSWTEWAL 275 (286)
T ss_pred HHHHHHHhcC-CCcceecccHHHHhh
Confidence 9999999999 789999999999996
No 78
>KOG3259 consensus Peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.02 E-value=4.6e-11 Score=91.92 Aligned_cols=93 Identities=11% Similarity=-0.055 Sum_probs=75.3
Q ss_pred cccccCCchhh-------------hhccccccccccccCCccccccCCchhH-HhhhhccCCCCCCCceeeeecccccCc
Q 022496 3 LRASQLASPVL-------------CAITQSLIPTLNLSSSSSLSIFQKPASF-ASFYKSLNPASNSNSFHIHIISRSFTS 68 (296)
Q Consensus 3 ~~~~~~~~~~~-------------~~~~~~~~~~~~~~r~~~~~~~~~f~~l-~~~s~~~~~~~~~~~l~~~~~~~~~~~ 68 (296)
+|++||+.+-. +--|+..+.-++-|++.+.++...|..| .++| |..+++.||+||+|.+++|-.+
T Consensus 55 Vr~sHlLVKH~~SRrpsSwr~~~it~skeeA~~llk~~~~~l~~g~~~f~elA~q~S-dCSSaKRGGDLG~fgrgqMqk~ 133 (163)
T KOG3259|consen 55 VRCSHLLVKHKGSRRPSSWRSENITRSKEEALDLLKGYHEDLKSGSGDFEELAKQRS-DCSSAKRGGDLGFFGRGQMQKP 133 (163)
T ss_pred eeEEEEEEccccCCCCcccccccchhhHHHHHHHHHHhHHHhhcCcccHHHHHHhhc-ChhhhccCCccccccccccccc
Confidence 68999998762 2224445556678888888888889999 8887 9999999999999999999999
Q ss_pred hhhcccccCCCCCCCCCCCceEEEeeEeec
Q 022496 69 PKAASFSSGTEGSSPGGGDREILVQHLLVK 98 (296)
Q Consensus 69 ~e~~~~~~~~~~i~~~~~~~~~~~~~Il~~ 98 (296)
||+|+|+++.||+|.++.. -..-||+..
T Consensus 134 FEdaafaL~~ge~SgiV~t--~SG~HiI~R 161 (163)
T KOG3259|consen 134 FEDAAFALKVGEMSGIVDT--DSGVHIIYR 161 (163)
T ss_pred chhhhhhcccccccCceec--CCceEEEEe
Confidence 9999999999999999733 344566543
No 79
>KOG1529 consensus Mercaptopyruvate sulfurtransferase/thiosulfate sulfurtransferase [Defense mechanisms]
Probab=98.65 E-value=1.5e-07 Score=81.47 Aligned_cols=100 Identities=15% Similarity=0.208 Sum_probs=75.7
Q ss_pred CCHHHHHHHhcCCCCCCCcEEEecC---------ChHHHHhhCCCCceecccccccCCCCCcc---------------CC
Q 022496 188 IQPDELHKKMQDPNFHKEAQLIDVR---------EPEEVALSSLPGFQVLPLRQFGSWGPDIT---------------VK 243 (296)
Q Consensus 188 is~~ev~~~L~~~~~~~~~~llDvR---------~~~ey~~ghIpgA~~ip~~~l~~~~~~~~---------------~~ 243 (296)
++..-+.+.+.+ ....+||.. ...||..-|||||.++.++.....-.... .+
T Consensus 7 v~~~~v~~~~~~----~~~~iLDaSw~~~~~~~~~~~e~~~~hipga~~fdld~~~~~s~~~~~~lp~~e~Fa~y~~~lG 82 (286)
T KOG1529|consen 7 VSVKWVMENLGN----HGLRILDASWYFPPLRRIAEFEFLERHIPGASHFDLDIISYPSSPYRHMLPTAEHFAEYASRLG 82 (286)
T ss_pred cChHHHHHhCcC----CCeEEEeeeeecCchhhhhhhhhhhccCCCceeeeccccccCCCcccccCccHHHHHHHHHhcC
Confidence 455666666765 357788874 23578889999999998887643211110 14
Q ss_pred CCCCCcEEEEeC--CCh-hHHHHHHHHHHcCCCceEEccchHHHhhhccCC
Q 022496 244 FDPQKDTYVMCH--HGM-RSLQVAQWLQTQGFRRVFNVSGGIHAYATKVDP 291 (296)
Q Consensus 244 ~~~~~~iv~~C~--~G~-rs~~aa~~L~~~G~~~v~~l~GG~~~W~~~~~~ 291 (296)
++.++.+|||.+ .|. -|..++++++-.|+++|.+|+||+..|++...|
T Consensus 83 i~n~d~vViYd~~~~Gm~~Asrv~W~fr~fGh~~VslL~GG~~~Wk~~g~~ 133 (286)
T KOG1529|consen 83 VDNGDHVVIYDRGDGGMFSASRVWWTFRVFGHTKVSLLNGGFRAWKAAGGP 133 (286)
T ss_pred CCCCCeEEEEcCCCcceeehhhHHHHHHHhCccEEEEecCcHHHHHHcCCc
Confidence 578899999999 774 667999999999999999999999999987665
No 80
>PRK10788 periplasmic folding chaperone; Provisional
Probab=98.64 E-value=1.4e-07 Score=93.09 Aligned_cols=149 Identities=11% Similarity=0.044 Sum_probs=98.8
Q ss_pred cCCccccccCCchhH-HhhhhccCCCCCCCceeeeecccccCchhhcccccCCCCCCCCCC-CceEEEeeEeeccc----
Q 022496 27 SSSSSLSIFQKPASF-ASFYKSLNPASNSNSFHIHIISRSFTSPKAASFSSGTEGSSPGGG-DREILVQHLLVKED---- 100 (296)
Q Consensus 27 ~r~~~~~~~~~f~~l-~~~s~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~~~~~i~~~~~-~~~~~~~~Il~~~~---- 100 (296)
+...+..| ..|+.+ ++||.|+.++.+||+|||+..+.++++++.+.| ..+|+||+|.. ...+|+-++.=..+
T Consensus 287 ~~~~l~~G-~~F~~lA~~~s~d~~s~~~gGdlg~~~~~~~~~~~~~a~~-~~~G~vs~pv~t~~G~~Iikv~~~~~~~~~ 364 (623)
T PRK10788 287 VLDELKKG-ADFATLAKEKSTDIISARNGGDLGWLEPATTPDELKNAGL-KEKGQLSGVIKSSVGFLIVRLDDIQPAKVK 364 (623)
T ss_pred HHHHHhCC-CCHHHHHHHhCCCcchhhcCCcccccCCCCCChHHHHHhc-cCCCCcCCcEEECCeEEEEEEEeeccCCCC
Confidence 33445566 489999 999999999999999999999999999999988 47799998843 33344444332211
Q ss_pred -----------------h----HHHHHHHHHHHhcCCccHHHHHHhhCCCCcccCCcccccccCCCC-----cHHHHHHH
Q 022496 101 -----------------D----LNLLSELQRRVSQGREDLSDLAVEHSICPSKGEGGMLGWVRKGQL-----VPEFEEVA 154 (296)
Q Consensus 101 -----------------~----~~~a~~i~~~l~~~g~~F~~la~~~S~d~~~~~gG~lg~~~~~~l-----~~~~~~~~ 154 (296)
+ ...++.+.+.+.++|.+|+++|+...-.. ...+|++.+.. .+++..++
T Consensus 365 ~~~evk~~I~~~l~~~ka~~~~~~~~~~l~~~~~~~~~~l~~~a~~~~l~~-----~~~~~~~~~~~~~~~~~~~~~~~a 439 (623)
T PRK10788 365 PLSEVRDDIAAKVKQEKALDAYYALQQKVSDAASNDNESLASAEQAAGVKA-----VQTGWFSRDNVPAELNFKPVAQAI 439 (623)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCccchHHHHHHcCCeE-----EEcCCcCCCCCccccCCHHHHHHH
Confidence 0 11233444444335678888887653221 11234443322 25688899
Q ss_pred hcC-------CCCceec-eeec-CcceEEEeehhhhh
Q 022496 155 FTT-------PLNKVAR-CKTK-FGWHLLQVLSEREA 182 (296)
Q Consensus 155 ~~l-------~~G~vsp-v~~~-~G~~Ii~v~~~~~~ 182 (296)
|.. ++|..|+ +... .||.++++.+..+.
T Consensus 440 F~~~v~~~~~~~g~~s~~i~~~~~~~~vv~v~~~~p~ 476 (623)
T PRK10788 440 FNGGLVGENGAPGSNSDVITVDGDRAFVLRISEHKPE 476 (623)
T ss_pred cChHhhhccccCCCCCCCEEEcCCEEEEEEEcccCcC
Confidence 984 4688884 7765 56888999887664
No 81
>PF13616 Rotamase_3: PPIC-type PPIASE domain; PDB: 3RFW_A 3UI5_A 3UI4_A 1FJD_A 1EQ3_A 1ZK6_A.
Probab=98.58 E-value=7.6e-09 Score=79.79 Aligned_cols=92 Identities=13% Similarity=0.006 Sum_probs=68.6
Q ss_pred ccccccCCchh---hhhccccccccccccCCccccccCCchhH-HhhhhccCCCCCCCceeeee-cccccCchhhccccc
Q 022496 2 MLRASQLASPV---LCAITQSLIPTLNLSSSSSLSIFQKPASF-ASFYKSLNPASNSNSFHIHI-ISRSFTSPKAASFSS 76 (296)
Q Consensus 2 ~~~~~~~~~~~---~~~~~~~~~~~~~~~r~~~~~~~~~f~~l-~~~s~~~~~~~~~~~l~~~~-~~~~~~~~e~~~~~~ 76 (296)
.+|.+||+-+. +...........+.+...+..| .+|+.+ ++||+|+.++.+||++||+. ...+.++|+.+.|.+
T Consensus 15 ~v~~~~I~i~~~~~~~~~~~~ak~~a~~i~~~l~~G-~dF~~lA~~yS~D~~s~~~gG~lgw~~~~~~~~~~f~~~~~~l 93 (117)
T PF13616_consen 15 EVKVSHILIPVPDASSRSKEEAKKKADSILKQLKSG-ADFAELAKKYSQDPSSAENGGDLGWMSEPSQLPPEFEEAAFSL 93 (117)
T ss_dssp EEEEEEEEESS-----------HHHHHHHHHHHHCT-CCHHHHHHHHTSSCGTGGGTTEEEEEETTTSSSCHHHHHHHHS
T ss_pred eEEEEEEEEeccccccchhHHHHHHHHHHHHHHHCC-CCHHHHHHHhCCCCcccccCCccccccCCccccHHHHHHHHcC
Confidence 36788998886 3444444566677777777766 499999 99999999999999999999 999999999999999
Q ss_pred CCCCCCCCC-CCceEEEee
Q 022496 77 GTEGSSPGG-GDREILVQH 94 (296)
Q Consensus 77 ~~~~i~~~~-~~~~~~~~~ 94 (296)
++|+||.+. .+.-+|+-+
T Consensus 94 ~~G~is~~v~s~~G~hIik 112 (117)
T PF13616_consen 94 KVGEISGPVESPNGYHIIK 112 (117)
T ss_dssp -TTECTCEEEETTEEEEEE
T ss_pred CCCCCCCeEEECCEEEEEE
Confidence 999998863 334444433
No 82
>PTZ00356 peptidyl-prolyl cis-trans isomerase (PPIase); Provisional
Probab=98.38 E-value=4.6e-08 Score=75.12 Aligned_cols=82 Identities=12% Similarity=-0.040 Sum_probs=68.3
Q ss_pred cccccCCchhhh--------------hccccccccccccCCccccccCCchhH-HhhhhccCCCCCCCceeeeecccccC
Q 022496 3 LRASQLASPVLC--------------AITQSLIPTLNLSSSSSLSIFQKPASF-ASFYKSLNPASNSNSFHIHIISRSFT 67 (296)
Q Consensus 3 ~~~~~~~~~~~~--------------~~~~~~~~~~~~~r~~~~~~~~~f~~l-~~~s~~~~~~~~~~~l~~~~~~~~~~ 67 (296)
+|++||+-+++. +.+......++.+++.+..+...|+.+ ++||++ .++..+|++||+....+.+
T Consensus 6 ~~~~hIli~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~i~~~l~~g~~~F~~la~~~S~~-~~~~~gG~lG~~~~~~L~~ 84 (115)
T PTZ00356 6 VRAAHLLIKHTGSRNPVSRRTGKPVTRSKEEAIKELAKWREQIVSGEKTFEEIARQRSDC-GSAAKGGDLGFFGRGQMQK 84 (115)
T ss_pred EEEEEEEEecCCCcCcccccccccccccHHHHHHHHHHHHHHHHhCccCHHHHHHHhCCC-chhhcCccceeEcccccCH
Confidence 688999988765 234455566778888777776689999 999987 5778999999999999999
Q ss_pred chhhcccccCCCCCCCCC
Q 022496 68 SPKAASFSSGTEGSSPGG 85 (296)
Q Consensus 68 ~~e~~~~~~~~~~i~~~~ 85 (296)
+|..+.|.+++|+|+.|.
T Consensus 85 ~~~~a~~~L~~Geis~Pi 102 (115)
T PTZ00356 85 PFEDAAFALKVGEISDIV 102 (115)
T ss_pred HHHHHHHcCCCCCCCCcE
Confidence 999999999999999874
No 83
>PF00639 Rotamase: PPIC-type PPIASE domain; InterPro: IPR000297 Peptidylprolyl isomerase (5.2.1.8 from EC) is an enzyme that accelerates protein folding by catalyzing the cis-trans isomerization of proline imidic peptide bonds in oligopeptides []. It has been reported in bacteria and eukayotes. Synonyms for proteins with this domain are: Peptidylprolyl isomerase, Peptidyl-prolyl cis-trans isomerase, PPIase, rotamase, cyclophilin, FKBP65.; GO: 0016853 isomerase activity; PDB: 2JZV_A 2PV3_B 1M5Y_A 2PV2_B 2PV1_A 1JNS_A 1JNT_A 3KAB_A 2ZR6_A 2XPB_A ....
Probab=98.37 E-value=2.3e-08 Score=74.15 Aligned_cols=73 Identities=8% Similarity=-0.149 Sum_probs=66.8
Q ss_pred hhhccccccccccccCCccccccCCchhH-HhhhhccCCCCCCCceeeeecccccCchhhcccccCCCCCCCCC
Q 022496 13 LCAITQSLIPTLNLSSSSSLSIFQKPASF-ASFYKSLNPASNSNSFHIHIISRSFTSPKAASFSSGTEGSSPGG 85 (296)
Q Consensus 13 ~~~~~~~~~~~~~~~r~~~~~~~~~f~~l-~~~s~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~~~~~i~~~~ 85 (296)
+.+.++.....++.++..+..+...|+.+ ++||.+..++.+||.+||+..+.+.++++.+.|.+++|+||.|.
T Consensus 9 ~~~~~~~~~~~a~~i~~~l~~g~~~F~~~A~~yS~~~~~~~~gG~~g~~~~~~l~~~~~~~~~~l~~Gevs~pi 82 (95)
T PF00639_consen 9 SDEEKDAAKKKAEEIYEQLKKGEDSFAELAREYSEDSPSAENGGDLGWISRGQLPPEFEKALFALKPGEVSKPI 82 (95)
T ss_dssp SCCHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHCSSSCTGGGTTEEEEEETTSSBHHHHHHHHTSTTTSBEEEE
T ss_pred chhhHHHHHHHHHHHHHHHHhCchhHHHHHHHhCCCcccccccCccccccCCcccHHHHHHHHhCCCCCcCCCE
Confidence 56777777888889999888998779999 99999999999999999999999999999999999999999874
No 84
>COG5105 MIH1 Mitotic inducer, protein phosphatase [Cell division and chromosome partitioning]
Probab=98.31 E-value=4.4e-07 Score=79.21 Aligned_cols=105 Identities=14% Similarity=0.217 Sum_probs=76.7
Q ss_pred hhhhhcCCCHHHHHHHhcCCCCC---CCcEEEecCChHHHHhhCCCCceecccccccCCCCCcc-CCCCCCCcEEEEeC-
Q 022496 181 EASLLQDIQPDELHKKMQDPNFH---KEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDIT-VKFDPQKDTYVMCH- 255 (296)
Q Consensus 181 ~~~~~~~is~~ev~~~L~~~~~~---~~~~llDvR~~~ey~~ghIpgA~~ip~~~l~~~~~~~~-~~~~~~~~iv~~C~- 255 (296)
....++.|+.+.++..++.. +. .+.++||+|-+.||.+|||-+|+||.-.+-... .+. .-+.--.-+|++|.
T Consensus 237 k~Ds~~RIs~etlk~vl~g~-~~~~f~kCiIIDCRFeYEY~GGHIinaVNi~s~~~l~~--~F~hkplThp~aLifHCEf 313 (427)
T COG5105 237 KSDSIQRISVETLKQVLEGM-YNIDFLKCIIIDCRFEYEYRGGHIINAVNISSTKKLGL--LFRHKPLTHPRALIFHCEF 313 (427)
T ss_pred cccchhhcCHHHHHHHHhch-hhhhhhceeEEeecceeeecCceeeeeeecchHHHHHH--HHHhccccCceeEEEEeec
Confidence 34556778888888877643 22 236799999999999999999999975532110 111 11233567999998
Q ss_pred CChhHHHHHHHHHHc------------CCCceEEccchHHHhhhc
Q 022496 256 HGMRSLQVAQWLQTQ------------GFRRVFNVSGGIHAYATK 288 (296)
Q Consensus 256 ~G~rs~~aa~~L~~~------------G~~~v~~l~GG~~~W~~~ 288 (296)
+.+|+...|..|+.. -|+.|++|+||+...-..
T Consensus 314 SshRaP~LA~HlRN~DR~~N~dhYP~L~yPevyIl~GGYk~fy~n 358 (427)
T COG5105 314 SSHRAPRLAQHLRNMDRMKNPDHYPLLTYPEVYILEGGYKKFYSN 358 (427)
T ss_pred ccccchhHHHHHhhhhhhcCcccCcccccceEEEecCcHHHHhhc
Confidence 779999999999874 457899999999876643
No 85
>TIGR02933 nifM_nitrog nitrogen fixation protein NifM. Members of this protein family, found in a subset of nitrogen-fixing bacteria, are the nitrogen fixation protein NifM. NifM, homologous to peptidyl-prolyl cis-trans isomerases, appears to be an accessory protein for NifH, the Fe protein, also called component II or dinitrogenase reductase, of nitrogenase.
Probab=98.17 E-value=2.5e-07 Score=81.15 Aligned_cols=91 Identities=13% Similarity=-0.053 Sum_probs=69.2
Q ss_pred ccccCCchhhhhccccccccccccCCccccccCCchhH-HhhhhccCCCCCCCceeeeecccccCchhhcccccCCCCCC
Q 022496 4 RASQLASPVLCAITQSLIPTLNLSSSSSLSIFQKPASF-ASFYKSLNPASNSNSFHIHIISRSFTSPKAASFSSGTEGSS 82 (296)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~f~~l-~~~s~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~~~~~i~ 82 (296)
|.+||+-+.++..........++++..+..|...|+.+ ++||.++ ++..||++||+..+.+.++|+.+.+.+++|+||
T Consensus 125 ~~~hIli~~~~~~~~~a~~~a~~l~~~l~~g~~~F~~lA~~~S~~~-sa~~GGdlG~~~~~~l~~~~~~~l~~L~~G~vS 203 (256)
T TIGR02933 125 LTRHLLLTVNEDDREAVRTRILAILRRLRGKPAAFAEQAMRHSHCP-TAMEGGLLGWVSRGLLYPQLDAALFQLAEGELS 203 (256)
T ss_pred EEEEEEEECCcccHHHHHHHHHHHHHHHHhCcccHHHHHHHhCCCC-ccccCCccCCcCCCccChHHHHHHHcCCCCCcC
Confidence 57888877654433333444456666666666689999 9999998 778999999999999999999999999999999
Q ss_pred CCCCCceEEEeeEee
Q 022496 83 PGGGDREILVQHLLV 97 (296)
Q Consensus 83 ~~~~~~~~~~~~Il~ 97 (296)
+|...+ ..-||+.
T Consensus 204 ~Pi~s~--~G~hIlk 216 (256)
T TIGR02933 204 PPIESE--IGWHLLL 216 (256)
T ss_pred CceeeC--CeEEEEE
Confidence 985332 3455554
No 86
>KOG3258 consensus Parvulin-like peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.16 E-value=2e-06 Score=63.02 Aligned_cols=64 Identities=11% Similarity=0.012 Sum_probs=51.4
Q ss_pred ccccCCchhH-HhhhhccCCCCCCCceeeeecccccCchhhcccccCCCCCCCCC----CCceEEEeeEeec
Q 022496 32 LSIFQKPASF-ASFYKSLNPASNSNSFHIHIISRSFTSPKAASFSSGTEGSSPGG----GDREILVQHLLVK 98 (296)
Q Consensus 32 ~~~~~~f~~l-~~~s~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~~~~~i~~~~----~~~~~~~~~Il~~ 98 (296)
+++. .|..+ .+||+|. ++.||+|||+.++.|+-+|.+++|+++.+.+..|. ....-+-.||++.
T Consensus 61 k~G~-~F~evAA~YSEdk--ar~GGDLGW~~RG~MvGPFQdaAFalpvs~~~~pv~TdpP~KtkfGYHiImv 129 (133)
T KOG3258|consen 61 KSGM-KFNEVAAQYSEDK--ARQGGDLGWMTRGSMVGPFQDAAFALPVSTVDKPVYTDPPVKTKFGYHIIMV 129 (133)
T ss_pred Hccc-chHHHHHHhccCc--cccCCcccceeccccccchhhhhhcccccccCCccccCCCcccccceEEEEe
Confidence 4554 79999 9999998 89999999999999999999999999987666551 1234456777663
No 87
>PF13145 Rotamase_2: PPIC-type PPIASE domain; PDB: 3NRK_A 2KGJ_A.
Probab=98.07 E-value=2.4e-06 Score=65.38 Aligned_cols=88 Identities=23% Similarity=0.322 Sum_probs=58.0
Q ss_pred ceEEEeeEeeccchHHHHHHHHHHHhc-CCccHHHHHHhhCCCCcccCCcccccccC-CCCcHHHHHHHhcCCCCcee-c
Q 022496 88 REILVQHLLVKEDDLNLLSELQRRVSQ-GREDLSDLAVEHSICPSKGEGGMLGWVRK-GQLVPEFEEVAFTTPLNKVA-R 164 (296)
Q Consensus 88 ~~~~~~~Il~~~~~~~~a~~i~~~l~~-~g~~F~~la~~~S~d~~~~~gG~lg~~~~-~~l~~~~~~~~~~l~~G~vs-p 164 (296)
..+.+.+++++.... ++...+.++. .+.+|.+++..++.+. ..++|... ..++++|.++++.|+.|++| |
T Consensus 21 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~l~~g~~s~~ 93 (121)
T PF13145_consen 21 ERRIFQIIFFKAEDA--AEAAKALAKKKAGEDFAALAKKYSIDQ-----SDLGIFTDESDLPPEFADALFKLKPGEVSGP 93 (121)
T ss_dssp EEEEEEEEEESSCCH--HHHHHHHHHHHCHHHHHHHHHCTHCCC-----CCCCCCETTHHH-HHHHCCHTT-STT-EEEE
T ss_pred ccEEEEEEEeCCHHH--HHHHHHHHhhcccchHHHHHHhcCCcc-----ccccccccccccCHHHHHHHhcCCCCCeeee
Confidence 445566666665543 2333333321 3468888888776653 33345554 35788999999999999999 7
Q ss_pred eeecCcceEEEeehhhhh
Q 022496 165 CKTKFGWHLLQVLSEREA 182 (296)
Q Consensus 165 v~~~~G~~Ii~v~~~~~~ 182 (296)
+.+..|||++++..+.+.
T Consensus 94 i~~~~~~~v~~v~~~~~~ 111 (121)
T PF13145_consen 94 IESGNGYYVVKVKERNPA 111 (121)
T ss_dssp EEETTEEEEEEEEEEEE-
T ss_pred EEECCEEEEEEEEeecCC
Confidence 999999999999987764
No 88
>PRK15441 peptidyl-prolyl cis-trans isomerase C; Provisional
Probab=98.04 E-value=1.6e-06 Score=63.96 Aligned_cols=81 Identities=4% Similarity=-0.191 Sum_probs=60.1
Q ss_pred cccccCCchhhhhccccccccccccCCccccccCCchhH-HhhhhccCCCCCCCceeeeecccccCchhhcccccCCCCC
Q 022496 3 LRASQLASPVLCAITQSLIPTLNLSSSSSLSIFQKPASF-ASFYKSLNPASNSNSFHIHIISRSFTSPKAASFSSGTEGS 81 (296)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~f~~l-~~~s~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~~~~~i 81 (296)
++.+||+-.-. ...+.+++.+..| ..|+.+ ++||+++. +..+|++||+..+++.++|+.+.|.+++|+|
T Consensus 5 ~~~~~I~~~~~--------~~A~~i~~~l~~g-~~F~~la~~~S~~~~-~~~gG~lg~~~~~~l~~~f~~a~~~l~~G~v 74 (93)
T PRK15441 5 AAALHILVKEE--------KLALDLLEQIKNG-ADFGKLAKKHSICPS-GKRGGDLGEFRQGQMVPAFDKVVFSCPVLEP 74 (93)
T ss_pred eEEEEEEECCH--------HHHHHHHHHHHCC-CCHHHHHHHhCCCch-hhcCccceeecccccCHHHHHHHHhCCCCCc
Confidence 46677766422 2224455555666 589999 99999974 5689999999999999999999999999999
Q ss_pred CCCC-CCceEEEe
Q 022496 82 SPGG-GDREILVQ 93 (296)
Q Consensus 82 ~~~~-~~~~~~~~ 93 (296)
+.|. ...-+|+-
T Consensus 75 s~Pi~t~~G~hIl 87 (93)
T PRK15441 75 TGPLHTQFGYHII 87 (93)
T ss_pred CCcEEcCCEEEEE
Confidence 9874 33334443
No 89
>PRK04405 prsA peptidylprolyl isomerase; Provisional
Probab=97.79 E-value=9.3e-06 Score=72.76 Aligned_cols=86 Identities=7% Similarity=-0.025 Sum_probs=62.7
Q ss_pred cccccCCchhhhhccccccccccccCCccccccCCchhH-HhhhhccCCCCCCCceeeeec--ccccCchhhcccccCCC
Q 022496 3 LRASQLASPVLCAITQSLIPTLNLSSSSSLSIFQKPASF-ASFYKSLNPASNSNSFHIHII--SRSFTSPKAASFSSGTE 79 (296)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~f~~l-~~~s~~~~~~~~~~~l~~~~~--~~~~~~~e~~~~~~~~~ 79 (296)
++++||+-+.. ...+.+.+.+..| ..|+.+ ++||.|+.++.+||++||+.. ..++++|+.++|.+++|
T Consensus 145 ~~v~hIlv~~~--------~~A~~v~~~l~~G-~~F~~lA~~~S~d~~~~~~GGdlG~~~~~~~~l~~~f~~a~~~L~~G 215 (298)
T PRK04405 145 VTVQHILVSKK--------STAETVIKKLKDG-KDFAKLAKKYSTDTATKNKGGKLSAFDSTDTTLDSTFKTAAFKLKNG 215 (298)
T ss_pred EEEEEEEecCh--------HHHHHHHHHHHCC-CCHHHHHHHhCCCcchhhcCCcCcccccCCCCCCHHHHHHHHcCCCC
Confidence 46677765422 1123344455666 489999 999999999999999998753 67899999999999999
Q ss_pred CCC-CC-CCCceEEEeeEee
Q 022496 80 GSS-PG-GGDREILVQHLLV 97 (296)
Q Consensus 80 ~i~-~~-~~~~~~~~~~Il~ 97 (296)
+|+ .| ..+.-+|+-.+.-
T Consensus 216 eiss~pv~t~~GyhIikv~~ 235 (298)
T PRK04405 216 EYTTTPVKTTYGYEVIKMIK 235 (298)
T ss_pred CccCCCEEeCCeEEEEEEee
Confidence 994 66 4445566655553
No 90
>PRK03095 prsA peptidylprolyl isomerase; Reviewed
Probab=97.70 E-value=1.4e-05 Score=71.28 Aligned_cols=84 Identities=6% Similarity=-0.031 Sum_probs=63.6
Q ss_pred cccccCCchhhhhccccccccccccCCccccccCCchhH-HhhhhccCCCCCCCceeeeecccccCchhhcccccCCCCC
Q 022496 3 LRASQLASPVLCAITQSLIPTLNLSSSSSLSIFQKPASF-ASFYKSLNPASNSNSFHIHIISRSFTSPKAASFSSGTEGS 81 (296)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~f~~l-~~~s~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~~~~~i 81 (296)
++.+||+-+..+ ..+..++.+..|. .|+.+ ++||.++.++.+||++||+..+.+.++|+.+.|.+++|+|
T Consensus 133 v~~~hIlv~~~~--------~A~~i~~~l~~G~-~F~~lA~~yS~d~~s~~~gG~lg~~~~~~L~~~~~~al~~L~~Gev 203 (287)
T PRK03095 133 IKASHILVKDEA--------TAKKVKEELGQGK-SFEELAKQYSEDTGSKEKGGDLGFFGAGKMVKEFEDAAYKLKKDEV 203 (287)
T ss_pred EEEEEEEeCCHH--------HHHHHHHHHHCCC-CHHHHHHHhCCCccccccCCcCceeccccccHHHHHHHHhCCCCCc
Confidence 456777655332 1234555556674 89999 9999999999999999999999999999999999999999
Q ss_pred CCCCC-CceEEEeeE
Q 022496 82 SPGGG-DREILVQHL 95 (296)
Q Consensus 82 ~~~~~-~~~~~~~~I 95 (296)
|+|.. +..+|+-++
T Consensus 204 S~pi~t~~G~hIikv 218 (287)
T PRK03095 204 SEPVKSQFGYHIIKV 218 (287)
T ss_pred CCceEECCEEEEEEE
Confidence 99842 233444333
No 91
>PRK02998 prsA peptidylprolyl isomerase; Reviewed
Probab=97.63 E-value=1.2e-05 Score=71.71 Aligned_cols=84 Identities=7% Similarity=-0.010 Sum_probs=63.7
Q ss_pred cccccCCchhhhhccccccccccccCCccccccCCchhH-HhhhhccCCCCCCCceeeeecccccCchhhcccccCCCCC
Q 022496 3 LRASQLASPVLCAITQSLIPTLNLSSSSSLSIFQKPASF-ASFYKSLNPASNSNSFHIHIISRSFTSPKAASFSSGTEGS 81 (296)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~f~~l-~~~s~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~~~~~i 81 (296)
++.+||+-+.. ...+.+++.+..|. .|+.+ ++||.++.++.+||++||+..+.+.++|+.++|.+++|+|
T Consensus 135 ~~v~~Ilv~~e--------~~A~~i~~~l~~G~-~F~~lA~~~S~d~~s~~~gG~lg~~~~~~l~~~~~~a~~~Lk~Gev 205 (283)
T PRK02998 135 MKVSHILVKDE--------KTAKEVKEKVNNGE-DFAALAKQYSEDTGSKEQGGEISGFAPGQTVKEFEEAAYKLDAGQV 205 (283)
T ss_pred eEEEEEEeCCH--------HHHHHHHHHHHCCC-CHHHHHHHhCCCcchhhcCCcCCCcCCCcchHHHHHHHHcCCCCCc
Confidence 35667765422 12244566666664 89999 9999999999999999999999999999999999999999
Q ss_pred CCCCCCceEEEeeEee
Q 022496 82 SPGGGDREILVQHLLV 97 (296)
Q Consensus 82 ~~~~~~~~~~~~~Il~ 97 (296)
|+|...+ ...||+.
T Consensus 206 S~pi~t~--~G~hIik 219 (283)
T PRK02998 206 SEPVKTT--YGYHIIK 219 (283)
T ss_pred CCceEEC--CEEEEEE
Confidence 9985332 3344444
No 92
>PRK03002 prsA peptidylprolyl isomerase; Reviewed
Probab=97.52 E-value=2.3e-05 Score=69.81 Aligned_cols=74 Identities=8% Similarity=-0.081 Sum_probs=59.4
Q ss_pred cccccCCchhhhhccccccccccccCCccccccCCchhH-HhhhhccCCCCCCCceeeeecccccCchhhcccccCCCCC
Q 022496 3 LRASQLASPVLCAITQSLIPTLNLSSSSSLSIFQKPASF-ASFYKSLNPASNSNSFHIHIISRSFTSPKAASFSSGTEGS 81 (296)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~f~~l-~~~s~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~~~~~i 81 (296)
++++||+-+..+ ..+.++..+..| ..|+.+ ++||.++.++..||++||+..+.+.++|+.+.|.+++|++
T Consensus 137 ~~~~~Ilv~~~~--------~A~~i~~~l~~G-~~F~~lA~~~S~d~~s~~~gGdlg~~~~~~l~p~~~~a~~~L~~Gev 207 (285)
T PRK03002 137 IKASHILVSDEN--------EAKEIKKKLDAG-ASFEELAKQESQDLLSKEKGGDLGYFNSGRMAPEFETAAYKLKVGQI 207 (285)
T ss_pred eEEEEEEECCHH--------HHHHHHHHHHCC-CCHHHHHHHhCCCcchhhcCCccceeccccCCHHHHHHHHcCCCCCc
Confidence 356777655322 123445555566 589999 9999999999999999999999999999999999999999
Q ss_pred CCCC
Q 022496 82 SPGG 85 (296)
Q Consensus 82 ~~~~ 85 (296)
|+|.
T Consensus 208 S~pI 211 (285)
T PRK03002 208 SNPV 211 (285)
T ss_pred CCcE
Confidence 9984
No 93
>COG2603 Predicted ATPase [General function prediction only]
Probab=96.48 E-value=0.00071 Score=59.00 Aligned_cols=81 Identities=32% Similarity=0.489 Sum_probs=57.4
Q ss_pred CcEEEecCChHHHHhhCCCCceecccccccC---------C-C-------------CCccC-------CCCCCCcEEEEe
Q 022496 205 EAQLIDVREPEEVALSSLPGFQVLPLRQFGS---------W-G-------------PDITV-------KFDPQKDTYVMC 254 (296)
Q Consensus 205 ~~~llDvR~~~ey~~ghIpgA~~ip~~~l~~---------~-~-------------~~~~~-------~~~~~~~iv~~C 254 (296)
+..++|||.|.||..|+.|+++|+|.-+=.. . . +++.. .+-.+.++-++|
T Consensus 15 ~~~lid~rap~ef~~g~~~ia~nl~~~ndder~~Igt~yKk~~~~~a~alg~~~vcG~i~~~~l~ask~f~e~~~~Gi~c 94 (334)
T COG2603 15 DTPLIDVRAPIEFENGAMPIAINLPLMNDDERQEIGTCYKKQGQDAAKALGHALVCGEIRQQRLEASKAFQEENPVGILC 94 (334)
T ss_pred CCceeeccchHHHhcccchhhhccccccchHHHHHHHHHhhcCcHHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCcceee
Confidence 6789999999999999999999998653110 0 0 00000 112345666668
Q ss_pred C-CChhHHHHHHHH-HHcCCCceEEccchHHHhh
Q 022496 255 H-HGMRSLQVAQWL-QTQGFRRVFNVSGGIHAYA 286 (296)
Q Consensus 255 ~-~G~rs~~aa~~L-~~~G~~~v~~l~GG~~~W~ 286 (296)
. +|.||...+.+| ...|++ .--+.||..+.+
T Consensus 95 ~rgg~rsk~v~~~l~~~~g~~-~~r~iGGeKalr 127 (334)
T COG2603 95 ARGGLRSKIVQKWLGYAAGID-YPRVIGGEKALR 127 (334)
T ss_pred ccccchhHHHHHHHHHHHHhh-hhhhhchHHHHH
Confidence 7 667999999999 778885 445689988765
No 94
>PRK12450 foldase protein PrsA; Reviewed
Probab=96.34 E-value=0.0019 Score=58.29 Aligned_cols=56 Identities=5% Similarity=-0.162 Sum_probs=43.3
Q ss_pred ccCCccc-cccCCchhH-HhhhhccCCCCCCCceeeee-cccccCchhhcccccCCCCCCCCC
Q 022496 26 LSSSSSL-SIFQKPASF-ASFYKSLNPASNSNSFHIHI-ISRSFTSPKAASFSSGTEGSSPGG 85 (296)
Q Consensus 26 ~~r~~~~-~~~~~f~~l-~~~s~~~~~~~~~~~l~~~~-~~~~~~~~e~~~~~~~~~~i~~~~ 85 (296)
.+.+.+. .| .+|+.+ ++||.++ ..+|++||.. ...|+++|+.++|.+++|+||++.
T Consensus 164 ~i~~~l~~~G-~dF~~lAk~~S~~~---~~~g~~~f~~~~~~l~~ef~~aa~~Lk~GevS~~i 222 (309)
T PRK12450 164 AALEAVKAEG-ADFAAIAKEKTIAA---DKKTTYTFDSGETTLPAEVVRAASGLKEGNRSEII 222 (309)
T ss_pred HHHHHHHhcC-CCHHHHHHHhCCCc---ccCCcccccCCCCCCCHHHHHHHHcCCCCCccccc
Confidence 3444444 35 489999 9999764 4578888865 347999999999999999999864
No 95
>PRK00059 prsA peptidylprolyl isomerase; Provisional
Probab=96.26 E-value=0.0041 Score=56.73 Aligned_cols=72 Identities=4% Similarity=-0.228 Sum_probs=56.4
Q ss_pred ccccCCccccccCCchhH-HhhhhccCCCCCCCceeeeec--ccccCchhhcccccCCCCCCCCC-CCceEEEeeEe
Q 022496 24 LNLSSSSSLSIFQKPASF-ASFYKSLNPASNSNSFHIHII--SRSFTSPKAASFSSGTEGSSPGG-GDREILVQHLL 96 (296)
Q Consensus 24 ~~~~r~~~~~~~~~f~~l-~~~s~~~~~~~~~~~l~~~~~--~~~~~~~e~~~~~~~~~~i~~~~-~~~~~~~~~Il 96 (296)
.+.+++.+..|. .|+.+ ++||.++.++..+|++||... +.+.+++..+.|.+++|+||+|. .+..+++-.+.
T Consensus 210 a~~~~~~l~~g~-~F~~la~~~s~~~~~~~~~g~lg~~~~~~~~l~~~~~~a~~~l~~Gevs~pi~~~~G~~i~~v~ 285 (336)
T PRK00059 210 AKKVKKRLDKGE-DFAKVAKEVSQDPGSKDKGGDLGDVPYSDSGYDKEFMDGAKALKEGEISAPVKTQFGYHIIKAI 285 (336)
T ss_pred HHHHHHHHHCCC-CHHHHHHHhCCCcchhhcCCcccccccccCccCHHHHHHHHcCCCCCcCccEecCCeEEEEEEE
Confidence 345555566675 99999 999999999999999999887 66788899999999999999884 33345554443
No 96
>PRK01326 prsA foldase protein PrsA; Reviewed
Probab=96.24 E-value=0.0041 Score=56.12 Aligned_cols=56 Identities=13% Similarity=-0.001 Sum_probs=44.1
Q ss_pred cCCccc-cccCCchhH-HhhhhccCCCCCCCceeeeeccc-ccCchhhcccccCCCCCCCCCC
Q 022496 27 SSSSSL-SIFQKPASF-ASFYKSLNPASNSNSFHIHIISR-SFTSPKAASFSSGTEGSSPGGG 86 (296)
Q Consensus 27 ~r~~~~-~~~~~f~~l-~~~s~~~~~~~~~~~l~~~~~~~-~~~~~e~~~~~~~~~~i~~~~~ 86 (296)
+...+. .| ..|+.+ ++||. ++.+||++||+..+. +.++|+.++|.+++|+||+|..
T Consensus 162 i~~~l~~~G-~dF~~lA~~~S~---s~~~GGdlg~~~~~~~l~~~~~~a~~~Lk~GevS~pv~ 220 (310)
T PRK01326 162 VLEEAKAEG-ADFAQIAKENTT---TKEKKGEYKFDSGSTNVPEQVKKAAFALDEDGVSDVIS 220 (310)
T ss_pred HHHHHHhCC-CCHHHHHHHhCc---ccccCCcccccCCCCcccHHHHHHHHcCCCCCcCCcee
Confidence 333444 35 489999 99987 678899999987654 5557999999999999999864
No 97
>COG0760 SurA Parvulin-like peptidyl-prolyl isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.39 E-value=0.0072 Score=53.62 Aligned_cols=79 Identities=9% Similarity=-0.013 Sum_probs=58.7
Q ss_pred cccccCCchhhhhccccccccccccCCccccccCCchhH-HhhhhccCCCCCCCceeeeecccccCchhhcccccCCCCC
Q 022496 3 LRASQLASPVLCAITQSLIPTLNLSSSSSLSIFQKPASF-ASFYKSLNPASNSNSFHIHIISRSFTSPKAASFSSGTEGS 81 (296)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~f~~l-~~~s~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~~~~~i 81 (296)
++++||+.+..+..+.... .++........+|..+ +++|.++.....|+.+||...+.++++|+.+.|.+++|++
T Consensus 169 ~~~~~i~~~~~~~a~~~~~----~~~~~~~~~~~~f~~~a~~~s~~~~~~~~g~~~~~~~~~~~~p~f~~a~~~~~~g~~ 244 (320)
T COG0760 169 VQARHILVKAEAKAKEALA----LLKKGVREAKADFAELAKKQSEDPSSKNGGGLLGWNKKGQLVPEFRKAAFILKVGEV 244 (320)
T ss_pred HhhcccccCchHhHHHHHH----HHHhccccccCCHHHHHHHcCCCcccccCCccccccCccccChHHHHHHHhccCccc
Confidence 5788888877755544331 1111100044689999 9999999877767788888899999999999999999999
Q ss_pred CCCC
Q 022496 82 SPGG 85 (296)
Q Consensus 82 ~~~~ 85 (296)
+.|.
T Consensus 245 ~~pv 248 (320)
T COG0760 245 SAPV 248 (320)
T ss_pred cccc
Confidence 9863
No 98
>TIGR02925 cis_trans_EpsD peptidyl-prolyl cis-trans isomerase, EpsD family. Members of this family belong to the peptidyl-prolyl cis-trans isomerase family and are found in loci associated with exopolysaccharide biosynthesis. All members are encoded near a homolog of EpsH, as detected by TIGR02602.
Probab=94.48 E-value=0.011 Score=50.93 Aligned_cols=83 Identities=12% Similarity=-0.076 Sum_probs=55.9
Q ss_pred cccccCCchhhhhccccccccccccCCccccccCCchhH-HhhhhccCCCCCCCceeeeecccccCchhhcccccCCCCC
Q 022496 3 LRASQLASPVLCAITQSLIPTLNLSSSSSLSIFQKPASF-ASFYKSLNPASNSNSFHIHIISRSFTSPKAASFSSGTEGS 81 (296)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~f~~l-~~~s~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~~~~~i 81 (296)
+|++||+-+.+++ ..+.++..+..+. .|..+ +.++. .+. ..++.+||+..+++.++|..+.+.+++|+|
T Consensus 139 ~~~~hIlv~~~~~-------~a~~~~~~l~~g~-~f~~la~~~~~-~~~-~~~~~~~~~~~~~l~~~~~~a~~~l~~G~i 208 (232)
T TIGR02925 139 YNLQEIALPPDME-------LLDELRAMVENGK-PLEDILAWLKA-KNV-PFNASSAARPAEQLPAEILAVLAKLKPGAP 208 (232)
T ss_pred EEEEEEEecCChh-------HHHHHHHHHhcCC-CHHHHHHHhhh-cCc-ccccccccCchhhCCHHHHHHHHhCCCCCe
Confidence 5677776543221 2344444444443 68888 66653 333 456788999999999999999999999999
Q ss_pred CCCCCCceEEEeeE
Q 022496 82 SPGGGDREILVQHL 95 (296)
Q Consensus 82 ~~~~~~~~~~~~~I 95 (296)
+....+.-+|+-.+
T Consensus 209 s~v~s~~G~hiikv 222 (232)
T TIGR02925 209 LVVQGPNNVLILVL 222 (232)
T ss_pred EEeecCCceEEEEE
Confidence 85555555655544
No 99
>PRK00142 putative rhodanese-related sulfurtransferase; Provisional
Probab=92.16 E-value=0.0051 Score=55.59 Aligned_cols=82 Identities=11% Similarity=0.078 Sum_probs=52.5
Q ss_pred CHHHHHHHhcCCCCCCCcEEEecCChHHHHhhCCCCceecccccccCCCCCccCCCCCCCcEEEEeCC--ChhH----HH
Q 022496 189 QPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKFDPQKDTYVMCHH--GMRS----LQ 262 (296)
Q Consensus 189 s~~ev~~~L~~~~~~~~~~llDvR~~~ey~~ghIpgA~~ip~~~l~~~~~~~~~~~~~~~~iv~~C~~--G~rs----~~ 262 (296)
+++++++.+.. ...++|+|....|+.+||||++|+|...+..+.+.+.. .+..+++++.-.. +... ..
T Consensus 17 ~~~~~~~~l~~-----~~~~~d~rg~i~~a~egIngtis~~~~~~~~~~~~l~~-~~~~~~i~l~~~~~~~~~f~~l~~~ 90 (314)
T PRK00142 17 DPEAFRDEHLA-----LCKSLGLKGRILVAEEGINGTVSGTIEQTEAYMAWLKA-DPRFADIRFKISEDDGHAFPRLSVK 90 (314)
T ss_pred CHHHHHHHHHH-----HHHHcCCeeEEEEcCCCceEEEEecHHHHHHHHHHHhh-CcCCCCceEEeccccCCCcccceee
Confidence 35667776664 45689999999999999999999999877766554443 1224444444322 2222 34
Q ss_pred HHHHHHHcCCC-ceE
Q 022496 263 VAQWLQTQGFR-RVF 276 (296)
Q Consensus 263 aa~~L~~~G~~-~v~ 276 (296)
+...|...|++ ++.
T Consensus 91 ~~~eLv~~G~d~~v~ 105 (314)
T PRK00142 91 VRKEIVALGLDDDID 105 (314)
T ss_pred eeeeeeecCCCCCCC
Confidence 55556666774 453
No 100
>KOG1093 consensus Predicted protein kinase (contains TBC and RHOD domains) [General function prediction only]
Probab=91.26 E-value=0.054 Score=51.74 Aligned_cols=81 Identities=11% Similarity=0.067 Sum_probs=55.9
Q ss_pred CcEEEecCChHHHHhhCCCCceecccccccCCCCCc--cCC--CCCCCcEEEEeCCChhHHHHHHHHHHcCCCceEEccc
Q 022496 205 EAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDI--TVK--FDPQKDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSG 280 (296)
Q Consensus 205 ~~~llDvR~~~ey~~ghIpgA~~ip~~~l~~~~~~~--~~~--~~~~~~iv~~C~~G~rs~~aa~~L~~~G~~~v~~l~G 280 (296)
...++|.|...||..+|+++++|+|+..-......+ ..+ -.+.++++++-....-++.....|..+-+..+.++++
T Consensus 634 ~l~v~d~r~~~ef~r~~~s~s~nip~~~~ea~l~~~~~l~~~~~~~~~~~v~~~~~~K~~~e~~~~~~~mk~p~~cil~~ 713 (725)
T KOG1093|consen 634 MLYVLDTRQESEFQREHFSDSINIPFNNHEADLDWLRFLPGIVCSEGKKCVVVGKNDKHAAERLTELYVMKVPRICILHD 713 (725)
T ss_pred HHHHHhHHHHHHHHHhhccccccCCccchHHHHHHhhcchHhHHhhCCeEEEeccchHHHHHHhhHHHHhcccHHHHHHH
Confidence 456899999999999999999999998322111111 011 1245666666665556666666777777888888999
Q ss_pred hHHHh
Q 022496 281 GIHAY 285 (296)
Q Consensus 281 G~~~W 285 (296)
|++..
T Consensus 714 ~~~~~ 718 (725)
T KOG1093|consen 714 GFNNI 718 (725)
T ss_pred HHhhc
Confidence 98843
No 101
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=87.25 E-value=0.73 Score=34.85 Aligned_cols=76 Identities=14% Similarity=0.133 Sum_probs=35.5
Q ss_pred cCCCHHHHHHHhcCCCCCCCcEEEecCChHHHHh------------hCCCCceeccccc--ccC----CCCCccCCCCCC
Q 022496 186 QDIQPDELHKKMQDPNFHKEAQLIDVREPEEVAL------------SSLPGFQVLPLRQ--FGS----WGPDITVKFDPQ 247 (296)
Q Consensus 186 ~~is~~ev~~~L~~~~~~~~~~llDvR~~~ey~~------------ghIpgA~~ip~~~--l~~----~~~~~~~~~~~~ 247 (296)
..++++++..+-..+ =..+|+.|++.|-.. ..==..+++|+.. +.. .....+.. ..
T Consensus 13 ~Q~~~~d~~~la~~G----fktVInlRpd~E~~~qp~~~~~~~~a~~~Gl~y~~iPv~~~~~~~~~v~~f~~~l~~--~~ 86 (110)
T PF04273_consen 13 GQPSPEDLAQLAAQG----FKTVINLRPDGEEPGQPSSAEEAAAAEALGLQYVHIPVDGGAITEEDVEAFADALES--LP 86 (110)
T ss_dssp CS--HHHHHHHHHCT------EEEE-S-TTSTTT-T-HHCHHHHHHHCT-EEEE----TTT--HHHHHHHHHHHHT--TT
T ss_pred CCCCHHHHHHHHHCC----CcEEEECCCCCCCCCCCCHHHHHHHHHHcCCeEEEeecCCCCCCHHHHHHHHHHHHh--CC
Confidence 457788888777654 346899997754210 0001234555442 100 00011122 35
Q ss_pred CcEEEEeCCChhHHHHHHHH
Q 022496 248 KDTYVMCHHGMRSLQVAQWL 267 (296)
Q Consensus 248 ~~iv~~C~~G~rs~~aa~~L 267 (296)
+||.+||++|.||...|..-
T Consensus 87 ~Pvl~hC~sG~Ra~~l~~l~ 106 (110)
T PF04273_consen 87 KPVLAHCRSGTRASALWALA 106 (110)
T ss_dssp TSEEEE-SCSHHHHHHHHHH
T ss_pred CCEEEECCCChhHHHHHHHH
Confidence 69999999999997766543
No 102
>KOG1717 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=84.90 E-value=0.79 Score=39.93 Aligned_cols=95 Identities=15% Similarity=0.150 Sum_probs=57.8
Q ss_pred CCHHHHHHHhcCCCCCCCcEEEecCChHHHHhhCCCCceecccccccCC--------CCCccCC------CC---CCCcE
Q 022496 188 IQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSW--------GPDITVK------FD---PQKDT 250 (296)
Q Consensus 188 is~~ev~~~L~~~~~~~~~~llDvR~~~ey~~ghIpgA~~ip~~~l~~~--------~~~~~~~------~~---~~~~i 250 (296)
++..++...+..+ +..++|+|+ +..||.+|+|+.+..+..+ ...+... .+ +...+
T Consensus 6 ~s~~wlnr~l~~~----nllllDCRs----es~~i~~A~~valPalmlrrl~~g~l~~ra~~p~~~d~~~~~~~c~~v~v 77 (343)
T KOG1717|consen 6 KSVAWLNRQLELG----NLLLLDCRS----ESSHIESAINVALPALMLRRLTGGNLPVRALFPRSCDDKRFPARCGTVTV 77 (343)
T ss_pred HHHHHHHhhcccC----ceEEEecCC----ccchhhhhhhhcchHHHHHHHhCCCCcceeccCCccccccccccCCccee
Confidence 4455666666654 688999999 6679999998766544321 0011110 11 23578
Q ss_pred EEEeCC--------ChhH--HHHHHHHHHcCCCceEEccchHHHhhhccCC
Q 022496 251 YVMCHH--------GMRS--LQVAQWLQTQGFRRVFNVSGGIHAYATKVDP 291 (296)
Q Consensus 251 v~~C~~--------G~rs--~~aa~~L~~~G~~~v~~l~GG~~~W~~~~~~ 291 (296)
|.|+.+ |.-+ ......|+..|+. ++.|.||+.-+..+.++
T Consensus 78 ilyD~~~~e~e~~~~~~s~Lg~ll~kl~~~g~~-a~yL~ggF~~fq~e~~~ 127 (343)
T KOG1717|consen 78 ILYDESSAEWEEETGAESVLGLLLKKLKDEGCS-ARYLSGGFSKFQAEASE 127 (343)
T ss_pred eecccccccccccchhhhHHHHHHHHHHhcCcc-hhhhhcccchhhhhhhh
Confidence 888875 2211 1223456667985 99999999877765543
No 103
>TIGR01244 conserved hypothetical protein TIGR01244. No member of this family is characterized. The member from Xylella fastidiosa is a longer protein with an N-terminal region described by this model, followed by a metallo-beta-lactamase family domain and an additional C-terminal region. Members scoring above the trusted cutoff are limited to the proteobacteria.
Probab=84.77 E-value=1 Score=35.30 Aligned_cols=81 Identities=15% Similarity=0.169 Sum_probs=43.2
Q ss_pred cCCCHHHHHHHhcCCCCCCCcEEEecCChHHHHhhC----------CCC--ceeccccc--ccC----CCCCccCCCCCC
Q 022496 186 QDIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSS----------LPG--FQVLPLRQ--FGS----WGPDITVKFDPQ 247 (296)
Q Consensus 186 ~~is~~ev~~~L~~~~~~~~~~llDvR~~~ey~~gh----------Ipg--A~~ip~~~--l~~----~~~~~~~~~~~~ 247 (296)
..++.+++..+...+ =..+||.|++.|..... -+| .+++|+.. +.. ....++. ..+
T Consensus 13 ~qlt~~d~~~L~~~G----iktVIdlR~~~E~~~~p~~~~~~~~a~~~gl~y~~iPv~~~~~~~~~v~~f~~~~~--~~~ 86 (135)
T TIGR01244 13 PQLTKADAAQAAQLG----FKTVINNRPDREEESQPDFAQIKAAAEAAGVTYHHQPVTAGDITPDDVETFRAAIG--AAE 86 (135)
T ss_pred CCCCHHHHHHHHHCC----CcEEEECCCCCCCCCCCCHHHHHHHHHHCCCeEEEeecCCCCCCHHHHHHHHHHHH--hCC
Confidence 346666666544332 34789999876532211 122 34555432 100 0001111 236
Q ss_pred CcEEEEeCCChhHHHHHHHHH-HcCC
Q 022496 248 KDTYVMCHHGMRSLQVAQWLQ-TQGF 272 (296)
Q Consensus 248 ~~iv~~C~~G~rs~~aa~~L~-~~G~ 272 (296)
++|++||.+|.|+..++..+. ..|.
T Consensus 87 ~pvL~HC~sG~Rt~~l~al~~~~~g~ 112 (135)
T TIGR01244 87 GPVLAYCRSGTRSSLLWGFRQAAEGV 112 (135)
T ss_pred CCEEEEcCCChHHHHHHHHHHHHcCC
Confidence 899999999999987765433 3354
No 104
>PF09992 DUF2233: Predicted periplasmic protein (DUF2233); InterPro: IPR018711 This entry contains proteins that catalyze the second step in the formation of the mannose 6-phosphate targeting signal on lysosomal enzyme oligosaccharides, this is achieved by removing GlcNAc residues from GlcNAc-alpha-P-mannose moieties, which are formed in the first step.; PDB: 3OHG_A.
Probab=79.35 E-value=2.1 Score=34.70 Aligned_cols=40 Identities=23% Similarity=0.346 Sum_probs=24.0
Q ss_pred CCCCcEEEEe-C----CChhHHHHHHHHHHcCCCceEEccchHHH
Q 022496 245 DPQKDTYVMC-H----HGMRSLQVAQWLQTQGFRRVFNVSGGIHA 284 (296)
Q Consensus 245 ~~~~~iv~~C-~----~G~rs~~aa~~L~~~G~~~v~~l~GG~~~ 284 (296)
+++..++++| . .|..-..++..|+++|..++.+||||-+.
T Consensus 98 ~~~g~l~l~~vdg~~~~g~tl~ela~~l~~lG~~~AinLDGGgSs 142 (170)
T PF09992_consen 98 TADGKLLLIVVDGRQSAGMTLDELAQLLKSLGCVDAINLDGGGSS 142 (170)
T ss_dssp -TTSEEEEEEE----S--B-HHHHHHHHHHHT-SEEEE---GGG-
T ss_pred eCCCcEEEEEEcCCcCCCCCHHHHHHHHHHcCcCeEEEecCCcce
Confidence 4555666555 4 36777899999999999999999998654
No 105
>PF01451 LMWPc: Low molecular weight phosphotyrosine protein phosphatase; InterPro: IPR023485 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents the low molecular weight (LMW) protein-tyrosine phosphatases (or acid phosphatase), which act on tyrosine phosphorylated proteins, low-MW aryl phosphates and natural and synthetic acyl phosphates [, ]. The structure of a LMW PTPase has been solved by X-ray crystallography [] and is found to form a single structural domain. It belongs to the alpha/beta class, with 6 alpha-helices and 4 beta-strands forming a 3-layer alpha-beta-alpha sandwich architecture.; PDB: 3RH0_B 1JL3_B 2IPA_B 1Z2D_A 1Z2E_A 2CWD_D 2L18_A 2L17_A 2L19_A 1BVH_A ....
Probab=75.61 E-value=2.3 Score=33.19 Aligned_cols=36 Identities=22% Similarity=0.170 Sum_probs=30.9
Q ss_pred EEEEeCCC-hhHHHHHHHHHHc----CCCceEEccchHHHh
Q 022496 250 TYVMCHHG-MRSLQVAQWLQTQ----GFRRVFNVSGGIHAY 285 (296)
Q Consensus 250 iv~~C~~G-~rs~~aa~~L~~~----G~~~v~~l~GG~~~W 285 (296)
|+|.|.+. .||..|..+|+.+ +-.++.+...|+.+|
T Consensus 1 ILFvC~~N~cRS~mAEai~~~~~~~~~~~~~~v~SAG~~~~ 41 (138)
T PF01451_consen 1 ILFVCTGNICRSPMAEAILRHLLKQRLGDRFEVESAGTEAW 41 (138)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHHHHTHTTTEEEEEEESSST
T ss_pred CEEEeCCCcchHHHHHHHHHHhccccccCCcEEEEEeeccc
Confidence 68999854 7999999999888 667899999999888
No 106
>PF05706 CDKN3: Cyclin-dependent kinase inhibitor 3 (CDKN3); InterPro: IPR022778 This entry represents a domain found in cyclin-dependent kinase inhibitor 3 or kinase associated phosphatase proteins from several mammalian species. The cyclin-dependent kinase (Cdk)-associated protein phosphatase (KAP) is a human dual specificity protein phosphatase that dephosphorylates Cdk2 on threonine 160 in a cyclin-dependent manner [], []. This domain is also found in MAP kinase phosphatase and esterases. This entry contains both eukaryotic and bacterial proteins.; GO: 0004721 phosphoprotein phosphatase activity, 0004725 protein tyrosine phosphatase activity; PDB: 1FQ1_A 1FPZ_F.
Probab=75.21 E-value=2.1 Score=34.85 Aligned_cols=29 Identities=24% Similarity=0.365 Sum_probs=18.7
Q ss_pred CCCCCCcEEEEeCCC-hhHH-HHHHHHHHcC
Q 022496 243 KFDPQKDTYVMCHHG-MRSL-QVAQWLQTQG 271 (296)
Q Consensus 243 ~~~~~~~iv~~C~~G-~rs~-~aa~~L~~~G 271 (296)
.+..+++|+++|.+| +|+. .||..|.++|
T Consensus 129 ~L~~g~~V~vHC~GGlGRtGlvAAcLLl~L~ 159 (168)
T PF05706_consen 129 RLENGRKVLVHCRGGLGRTGLVAACLLLELG 159 (168)
T ss_dssp HHHTT--EEEE-SSSSSHHHHHHHHHHHHH-
T ss_pred HHHcCCEEEEECCCCCCHHHHHHHHHHHHHc
Confidence 346789999999988 6776 5677777776
No 107
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=75.05 E-value=5.2 Score=32.60 Aligned_cols=32 Identities=22% Similarity=0.404 Sum_probs=24.8
Q ss_pred CCCCcEEEEeCCCh---hHHHHHHHHHHcCCCceEE
Q 022496 245 DPQKDTYVMCHHGM---RSLQVAQWLQTQGFRRVFN 277 (296)
Q Consensus 245 ~~~~~iv~~C~~G~---rs~~aa~~L~~~G~~~v~~ 277 (296)
++..+|++.|..|+ .+..+|++|...||. |.+
T Consensus 23 ~~~~~v~il~G~GnNGgDgl~~AR~L~~~G~~-V~v 57 (169)
T PF03853_consen 23 PKGPRVLILCGPGNNGGDGLVAARHLANRGYN-VTV 57 (169)
T ss_dssp CTT-EEEEEE-SSHHHHHHHHHHHHHHHTTCE-EEE
T ss_pred cCCCeEEEEECCCCChHHHHHHHHHHHHCCCe-EEE
Confidence 57889999999775 667889999999996 665
No 108
>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase. The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.
Probab=73.28 E-value=1.8 Score=39.17 Aligned_cols=70 Identities=19% Similarity=0.212 Sum_probs=45.6
Q ss_pred cCCCHHHHHHHhcCCCCCCCcEEEecCChHHHHh---hCCC-Cceecccc-cccCCCCCccCCCCCCCcEEEEeCCChhH
Q 022496 186 QDIQPDELHKKMQDPNFHKEAQLIDVREPEEVAL---SSLP-GFQVLPLR-QFGSWGPDITVKFDPQKDTYVMCHHGMRS 260 (296)
Q Consensus 186 ~~is~~ev~~~L~~~~~~~~~~llDvR~~~ey~~---ghIp-gA~~ip~~-~l~~~~~~~~~~~~~~~~iv~~C~~G~rs 260 (296)
.....+++...+.+. +..+||+|...+|.+ |||| |.. |-. .|...+...+..++..++|++-|.+...+
T Consensus 136 tg~gKt~Ll~~L~~~----~~~VvDlr~~a~hrGs~fG~~~~~~q--psq~~fe~~L~~~l~~~~~~~~i~~e~es~~ig 209 (311)
T TIGR03167 136 TGSGKTELLHALANA----GAQVLDLEGLANHRGSSFGALGLGPQ--PSQKRFENALAEALRRLDPGRPIFVEDESRRIG 209 (311)
T ss_pred CCcCHHHHHHHHhcC----CCeEEECCchHHhcCcccCCCCCCCC--CchHHHHHHHHHHHHhCCCCceEEEEeCchhhc
Confidence 346678888888764 578999999999998 9998 531 211 22221111122357788999999876544
Q ss_pred H
Q 022496 261 L 261 (296)
Q Consensus 261 ~ 261 (296)
.
T Consensus 210 ~ 210 (311)
T TIGR03167 210 R 210 (311)
T ss_pred c
Confidence 4
No 109
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]
Probab=73.15 E-value=5.3 Score=37.52 Aligned_cols=81 Identities=16% Similarity=0.153 Sum_probs=49.9
Q ss_pred CcEEEecCChHHHHhhCCCCceecccccccCCCCCccC-----------CCC----CCCcEEEEeCCCh------hHHHH
Q 022496 205 EAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITV-----------KFD----PQKDTYVMCHHGM------RSLQV 263 (296)
Q Consensus 205 ~~~llDvR~~~ey~~ghIpgA~~ip~~~l~~~~~~~~~-----------~~~----~~~~iv~~C~~G~------rs~~a 263 (296)
...+||+|+.+.|..||+..|.|+...-+.+.+.++.. .+. .+..=+.+-++|. .-...
T Consensus 326 rFFiVDcRpaeqynaGHlstaFhlDc~lmlqeP~~Fa~av~sLl~aqrqtie~~s~aggeHlcfmGsGr~EED~YmnMvi 405 (669)
T KOG3636|consen 326 RFFIVDCRPAEQYNAGHLSTAFHLDCVLMLQEPEKFAIAVNSLLCAQRQTIERDSNAGGEHLCFMGSGRDEEDNYMNMVI 405 (669)
T ss_pred EEEEEeccchhhcccccchhhhcccHHHHhcCHHHHHHHHHHHHHHHHHhhhccccCCcceEEEeccCcchHHHHHHHHH
Confidence 34689999999999999999999876655443221110 111 1223333334553 33455
Q ss_pred HHHHHHcCCCceEEccchHHHhh
Q 022496 264 AQWLQTQGFRRVFNVSGGIHAYA 286 (296)
Q Consensus 264 a~~L~~~G~~~v~~l~GG~~~W~ 286 (296)
|..|+..- .-|..+.||+..-.
T Consensus 406 A~FlQKnk-~yVS~~~GGy~~lh 427 (669)
T KOG3636|consen 406 AMFLQKNK-LYVSFVQGGYKKLH 427 (669)
T ss_pred HHHHhcCc-eEEEEecchHHHHH
Confidence 55555544 35889999987655
No 110
>smart00195 DSPc Dual specificity phosphatase, catalytic domain.
Probab=70.51 E-value=6.2 Score=30.53 Aligned_cols=29 Identities=17% Similarity=0.354 Sum_probs=20.6
Q ss_pred CCCCcEEEEeCCC-hhHHH-HHH-HHHHcCCC
Q 022496 245 DPQKDTYVMCHHG-MRSLQ-VAQ-WLQTQGFR 273 (296)
Q Consensus 245 ~~~~~iv~~C~~G-~rs~~-aa~-~L~~~G~~ 273 (296)
..+++|+|+|..| .||.. ++. .+...|++
T Consensus 76 ~~~~~VlVHC~~G~~RS~~v~~~yl~~~~~~~ 107 (138)
T smart00195 76 KKGGKVLVHCQAGVSRSATLIIAYLMKYRNLS 107 (138)
T ss_pred cCCCeEEEECCCCCchHHHHHHHHHHHHhCCC
Confidence 4678999999998 48864 344 44556774
No 111
>PLN03050 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=69.71 E-value=7.1 Score=33.99 Aligned_cols=31 Identities=23% Similarity=0.387 Sum_probs=25.2
Q ss_pred CCcEEEEeC---CChhHHHHHHHHHHcCCCceEEc
Q 022496 247 QKDTYVMCH---HGMRSLQVAQWLQTQGFRRVFNV 278 (296)
Q Consensus 247 ~~~iv~~C~---~G~rs~~aa~~L~~~G~~~v~~l 278 (296)
.++|+++|. +|+....+|++|...||+ |.++
T Consensus 60 ~~~V~VlcG~GNNGGDGlv~AR~L~~~G~~-V~v~ 93 (246)
T PLN03050 60 HPRVLLVCGPGNNGGDGLVAARHLAHFGYE-VTVC 93 (246)
T ss_pred CCeEEEEECCCCCchhHHHHHHHHHHCCCe-EEEE
Confidence 367999998 556888999999999994 6655
No 112
>COG2453 CDC14 Predicted protein-tyrosine phosphatase [Signal transduction mechanisms]
Probab=69.62 E-value=5 Score=33.06 Aligned_cols=30 Identities=30% Similarity=0.427 Sum_probs=19.3
Q ss_pred CCCCCcEEEEeCCC-hhHH-HHHHHH-HHcCCC
Q 022496 244 FDPQKDTYVMCHHG-MRSL-QVAQWL-QTQGFR 273 (296)
Q Consensus 244 ~~~~~~iv~~C~~G-~rs~-~aa~~L-~~~G~~ 273 (296)
+.+.++|+|+|..| +||. .++.+| ...|..
T Consensus 102 ~~~g~kVvVHC~~GigRSgtviaA~lm~~~~~~ 134 (180)
T COG2453 102 LSKGKKVVVHCQGGIGRSGTVIAAYLMLYGGLS 134 (180)
T ss_pred HhcCCeEEEEcCCCCchHHHHHHHHHHHHcCCC
Confidence 35677999999988 5775 444344 443443
No 113
>COG3453 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=65.98 E-value=7.7 Score=29.72 Aligned_cols=22 Identities=23% Similarity=0.351 Sum_probs=18.2
Q ss_pred CCCcEEEEeCCChhHHHHHHHH
Q 022496 246 PQKDTYVMCHHGMRSLQVAQWL 267 (296)
Q Consensus 246 ~~~~iv~~C~~G~rs~~aa~~L 267 (296)
.+.||+.||++|.||...+..-
T Consensus 86 aegPVlayCrsGtRs~~ly~~~ 107 (130)
T COG3453 86 AEGPVLAYCRSGTRSLNLYGLG 107 (130)
T ss_pred hCCCEEeeecCCchHHHHHHHH
Confidence 4779999999999998776543
No 114
>PF00782 DSPc: Dual specificity phosphatase, catalytic domain; InterPro: IPR000340 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents dual specificity protein-tyrosine phosphatases. Ser/Thr and Tyr dual specificity phosphatases are a group of enzymes with both Ser/Thr (3.1.3.16 from EC) and tyrosine specific protein phosphatase (3.1.3.48 from EC) activity able to remove both the serine/threonine or tyrosine-bound phosphate group from a wide range of phosphoproteins, including a number of enzymes which have been phosphorylated under the action of a kinase. Dual specificity protein phosphatases (DSPs) regulate mitogenic signal transduction and control the cell cycle. The crystal structure of a human DSP, vaccinia H1-related phosphatase (or VHR), has been determined at 2.1 angstrom resolution []. A shallow active site pocket in VHR allows for the hydrolysis of phosphorylated serine, threonine, or tyrosine protein residues, whereas the deeper active site of protein tyrosine phosphatases (PTPs) restricts substrate specificity to only phosphotyrosine. Positively charged crevices near the active site may explain the enzyme's preference for substrates with two phosphorylated residues. The VHR structure defines a conserved structural scaffold for both DSPs and PTPs. A "recognition region" connecting helix alpha1 to strand beta1, may determine differences in substrate specificity between VHR, the PTPs, and other DSPs. These proteins may also have inactive phosphatase domains, and dependent on the domain composition this loss of catalytic activity has different effects on protein function. Inactive single domain phosphatases can still specifically bind substrates, and protect again dephosphorylation, while the inactive domains of tandem phosphatases can be further subdivided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre [].; GO: 0008138 protein tyrosine/serine/threonine phosphatase activity, 0006470 protein dephosphorylation; PDB: 2G6Z_A 1MKP_A 1YZ4_A 2P4D_A 1M3G_A 1ZZW_A 2OUD_A 2HXP_A 3LJ8_A 1OHD_A ....
Probab=63.34 E-value=10 Score=29.03 Aligned_cols=29 Identities=28% Similarity=0.432 Sum_probs=20.2
Q ss_pred CCCCcEEEEeCCC-hhHHH-HHHHHHH-cCCC
Q 022496 245 DPQKDTYVMCHHG-MRSLQ-VAQWLQT-QGFR 273 (296)
Q Consensus 245 ~~~~~iv~~C~~G-~rs~~-aa~~L~~-~G~~ 273 (296)
.++.+|+|+|..| .||.. ++.+|.. .|++
T Consensus 71 ~~~~~VlVHC~~G~~RS~~v~~ayLm~~~~~~ 102 (133)
T PF00782_consen 71 SEGGKVLVHCKAGLSRSGAVAAAYLMKKNGMS 102 (133)
T ss_dssp HTTSEEEEEESSSSSHHHHHHHHHHHHHHTSS
T ss_pred cccceeEEEeCCCcccchHHHHHHHHHHcCCC
Confidence 4678999999988 57753 4444544 6664
No 115
>smart00226 LMWPc Low molecular weight phosphatase family.
Probab=62.48 E-value=8.6 Score=29.96 Aligned_cols=37 Identities=22% Similarity=0.178 Sum_probs=28.6
Q ss_pred EEEEeCCC-hhHHHHHHHHHHcCCCceEEccchHHHhh
Q 022496 250 TYVMCHHG-MRSLQVAQWLQTQGFRRVFNVSGGIHAYA 286 (296)
Q Consensus 250 iv~~C~~G-~rs~~aa~~L~~~G~~~v~~l~GG~~~W~ 286 (296)
|+|.|.+. .||..|..+|+.+.=.++.+...|+.+|.
T Consensus 1 vLFVC~~N~cRSpmAEa~~~~~~~~~~~v~SAG~~~~~ 38 (140)
T smart00226 1 ILFVCTGNICRSPMAEALFKAIVGDRVKIDSAGTGAWV 38 (140)
T ss_pred CEEEeCChhhhHHHHHHHHHHhcCCCEEEEcCcccCCC
Confidence 57889744 79999999998865345888888888774
No 116
>PTZ00393 protein tyrosine phosphatase; Provisional
Probab=62.36 E-value=9.5 Score=32.99 Aligned_cols=29 Identities=21% Similarity=0.235 Sum_probs=22.6
Q ss_pred CCCCcEEEEeCCC-hhHH-HHHHHHHHcCCC
Q 022496 245 DPQKDTYVMCHHG-MRSL-QVAQWLQTQGFR 273 (296)
Q Consensus 245 ~~~~~iv~~C~~G-~rs~-~aa~~L~~~G~~ 273 (296)
..+.+|+|+|..| +|+. .+|.+|.+.|++
T Consensus 168 ~~g~~VaVHC~AGlGRTGtl~AayLI~~Gms 198 (241)
T PTZ00393 168 KNNRAVAVHCVAGLGRAPVLASIVLIEFGMD 198 (241)
T ss_pred hcCCeEEEECCCCCCHHHHHHHHHHHHcCCC
Confidence 4678999999977 5665 667778788875
No 117
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=62.05 E-value=11 Score=27.62 Aligned_cols=37 Identities=19% Similarity=0.353 Sum_probs=26.5
Q ss_pred CCcEEEEeCCChhHHHHHHHHHH----cCCCceEEccchHHH
Q 022496 247 QKDTYVMCHHGMRSLQVAQWLQT----QGFRRVFNVSGGIHA 284 (296)
Q Consensus 247 ~~~iv~~C~~G~rs~~aa~~L~~----~G~~~v~~l~GG~~~ 284 (296)
.++|++.|.+|..|..++..+++ .|++ +.+-..++..
T Consensus 3 ~~~ILl~C~~G~sSS~l~~k~~~~~~~~gi~-~~v~a~~~~~ 43 (95)
T TIGR00853 3 ETNILLLCAAGMSTSLLVNKMNKAAEEYGVP-VKIAAGSYGA 43 (95)
T ss_pred ccEEEEECCCchhHHHHHHHHHHHHHHCCCc-EEEEEecHHH
Confidence 46899999999888777766654 5874 6555555544
No 118
>COG0062 Uncharacterized conserved protein [Function unknown]
Probab=61.61 E-value=14 Score=31.24 Aligned_cols=31 Identities=26% Similarity=0.475 Sum_probs=25.1
Q ss_pred CCcEEEEeCC---ChhHHHHHHHHHHcCCCceEEc
Q 022496 247 QKDTYVMCHH---GMRSLQVAQWLQTQGFRRVFNV 278 (296)
Q Consensus 247 ~~~iv~~C~~---G~rs~~aa~~L~~~G~~~v~~l 278 (296)
..+|+++|.. |+....+|+.|...||. |.++
T Consensus 49 ~~~v~vlcG~GnNGGDG~VaAR~L~~~G~~-V~v~ 82 (203)
T COG0062 49 ARRVLVLCGPGNNGGDGLVAARHLKAAGYA-VTVL 82 (203)
T ss_pred CCEEEEEECCCCccHHHHHHHHHHHhCCCc-eEEE
Confidence 6789999974 46888999999999985 5543
No 119
>PTZ00242 protein tyrosine phosphatase; Provisional
Probab=61.28 E-value=11 Score=30.65 Aligned_cols=27 Identities=33% Similarity=0.365 Sum_probs=19.9
Q ss_pred CCCCcEEEEeCCC-hhHH-HHHHHHHHcC
Q 022496 245 DPQKDTYVMCHHG-MRSL-QVAQWLQTQG 271 (296)
Q Consensus 245 ~~~~~iv~~C~~G-~rs~-~aa~~L~~~G 271 (296)
..+.+|+|+|..| +||. .++.+|...|
T Consensus 96 ~~g~~V~VHC~aGigRSgt~~a~yL~~~~ 124 (166)
T PTZ00242 96 TPPETIAVHCVAGLGRAPILVALALVEYG 124 (166)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHHHHHhC
Confidence 4688999999988 6776 4466666654
No 120
>cd00127 DSPc Dual specificity phosphatases (DSP); Ser/Thr and Tyr protein phosphatases. Structurally similar to tyrosine-specific phosphatases but with a shallower active site cleft and a distinctive active site signature motif, HCxxGxxR. Characterized as VHR- or Cdc25-like.
Probab=60.89 E-value=12 Score=28.71 Aligned_cols=68 Identities=18% Similarity=0.260 Sum_probs=35.7
Q ss_pred cEEEecCChHHHHhhCCC--CceecccccccCCCC--------Ccc-CCCCCCCcEEEEeCCCh-hHHHH-HH-HHHHcC
Q 022496 206 AQLIDVREPEEVALSSLP--GFQVLPLRQFGSWGP--------DIT-VKFDPQKDTYVMCHHGM-RSLQV-AQ-WLQTQG 271 (296)
Q Consensus 206 ~~llDvR~~~ey~~ghIp--gA~~ip~~~l~~~~~--------~~~-~~~~~~~~iv~~C~~G~-rs~~a-a~-~L~~~G 271 (296)
..+||+++..++..-+.+ ...++|+.+...... .+. .....+++|+|+|..|. ||..+ +. .+...|
T Consensus 29 ~~VI~l~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~i~~~~~~~~~vlVHC~~G~~Rs~~~~~~~l~~~~~ 108 (139)
T cd00127 29 THVLNVAKEVPNENLFLSDFNYLYVPILDLPSQDISKYFDEAVDFIDDAREKGGKVLVHCLAGVSRSATLVIAYLMKTLG 108 (139)
T ss_pred CEEEEcccCCCCcccCCCCceEEEEEceeCCCCChHHHHHHHHHHHHHHHhcCCcEEEECCCCCchhHHHHHHHHHHHcC
Confidence 468999887664111112 244566554431100 000 01235789999999884 88733 33 344455
Q ss_pred CC
Q 022496 272 FR 273 (296)
Q Consensus 272 ~~ 273 (296)
++
T Consensus 109 ~~ 110 (139)
T cd00127 109 LS 110 (139)
T ss_pred CC
Confidence 53
No 121
>PRK10126 tyrosine phosphatase; Provisional
Probab=60.65 E-value=12 Score=29.62 Aligned_cols=38 Identities=24% Similarity=0.273 Sum_probs=30.2
Q ss_pred CcEEEEeCCC-hhHHHHHHHHHHcCCCceEEccchHHHhh
Q 022496 248 KDTYVMCHHG-MRSLQVAQWLQTQGFRRVFNVSGGIHAYA 286 (296)
Q Consensus 248 ~~iv~~C~~G-~rs~~aa~~L~~~G~~~v~~l~GG~~~W~ 286 (296)
++|+|.|.+. -||..|..+|+..+ ..+.+...|...|.
T Consensus 3 ~~iLFVC~gN~cRSpmAEa~~~~~~-~~~~v~SAG~~~~~ 41 (147)
T PRK10126 3 NNILVVCVGNICRSPTAERLLQRYH-PELKVESAGLGALV 41 (147)
T ss_pred CeEEEEcCCcHhHHHHHHHHHHHhc-CCeEEEeeeccCCC
Confidence 5799999755 69999999999876 34777788887763
No 122
>TIGR02689 ars_reduc_gluta arsenate reductase, glutathione/glutaredoxin type. Members of this protein family represent a novel form of arsenate reductase, using glutathione and glutaredoxin rather than thioredoxin for reducing equivalents as do some homologous arsenate reductases. An example of this type is Synechocystis sp. strain PCC 6803 slr0946, and of latter type (excluded from this model) is Staphylococcus aureus plasmid pI258 ArsC. Both are among the subset of arsenate reductases that belong the the low-molecular-weight protein-tyrosine phosphatase superfamily.
Probab=60.53 E-value=15 Score=28.23 Aligned_cols=37 Identities=22% Similarity=0.365 Sum_probs=28.6
Q ss_pred CcEEEEeCC-ChhHHHHHHHHHHcCCCceEEccchHHH
Q 022496 248 KDTYVMCHH-GMRSLQVAQWLQTQGFRRVFNVSGGIHA 284 (296)
Q Consensus 248 ~~iv~~C~~-G~rs~~aa~~L~~~G~~~v~~l~GG~~~ 284 (296)
++|+|.|.+ --||..|..+|+.++-.++.+...|+..
T Consensus 1 ~~vlfvC~~N~cRS~mAEa~~~~~~~~~~~v~SAG~~~ 38 (126)
T TIGR02689 1 KKVMFVCKRNSCRSQMAEGFAKTLGAGNIAVTSAGLEV 38 (126)
T ss_pred CeEEEEcCCcHHHHHHHHHHHHHhcCCCEEEEcCcCCC
Confidence 468999974 4799999999998765567778788653
No 123
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=58.70 E-value=11 Score=28.13 Aligned_cols=37 Identities=22% Similarity=0.186 Sum_probs=26.1
Q ss_pred CcEEEEeCCChhHHHHHHHHHH----cCCCceEEccchHHHh
Q 022496 248 KDTYVMCHHGMRSLQVAQWLQT----QGFRRVFNVSGGIHAY 285 (296)
Q Consensus 248 ~~iv~~C~~G~rs~~aa~~L~~----~G~~~v~~l~GG~~~W 285 (296)
++|++.|.+|..|..++..+++ .|++ +.+-..+...-
T Consensus 2 kkILlvCg~G~STSlla~k~k~~~~e~gi~-~~i~a~~~~e~ 42 (104)
T PRK09590 2 KKALIICAAGMSSSMMAKKTTEYLKEQGKD-IEVDAITATEG 42 (104)
T ss_pred cEEEEECCCchHHHHHHHHHHHHHHHCCCc-eEEEEecHHHH
Confidence 4699999999988877776654 5874 65555555443
No 124
>PRK11391 etp phosphotyrosine-protein phosphatase; Provisional
Probab=57.34 E-value=15 Score=29.10 Aligned_cols=38 Identities=24% Similarity=0.275 Sum_probs=29.8
Q ss_pred CcEEEEeCCC-hhHHHHHHHHHHcCCCceEEccchHHHhh
Q 022496 248 KDTYVMCHHG-MRSLQVAQWLQTQGFRRVFNVSGGIHAYA 286 (296)
Q Consensus 248 ~~iv~~C~~G-~rs~~aa~~L~~~G~~~v~~l~GG~~~W~ 286 (296)
++|+|.|.+. -||..|..+|+... .++.+...|..+|.
T Consensus 3 ~~ILfVC~gN~cRSpmAEa~~~~~~-~~~~v~SaG~~~~~ 41 (144)
T PRK11391 3 NSILVVCTGNICRSPIGERLLRKRL-PGVKVKSAGVHGLV 41 (144)
T ss_pred CeEEEEcCCcHhHHHHHHHHHHHhc-CCeEEEcccccCCC
Confidence 5799999744 79999999998875 34777888887763
No 125
>PLN03049 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=57.14 E-value=14 Score=35.37 Aligned_cols=31 Identities=19% Similarity=0.333 Sum_probs=24.6
Q ss_pred CCcEEEEeCCC---hhHHHHHHHHHHcCCCceEEc
Q 022496 247 QKDTYVMCHHG---MRSLQVAQWLQTQGFRRVFNV 278 (296)
Q Consensus 247 ~~~iv~~C~~G---~rs~~aa~~L~~~G~~~v~~l 278 (296)
.++|+|+|..| +.+..+|+.|...||+ |.++
T Consensus 59 ~~~VlVlcG~GNNGGDGlv~AR~L~~~G~~-V~v~ 92 (462)
T PLN03049 59 YRRVLALCGPGNNGGDGLVAARHLHHFGYK-PSIC 92 (462)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHCCCc-eEEE
Confidence 36799999854 5778999999999995 6544
No 126
>cd00115 LMWPc Substituted updates: Aug 22, 2001
Probab=56.78 E-value=11 Score=29.40 Aligned_cols=37 Identities=14% Similarity=0.192 Sum_probs=29.4
Q ss_pred cEEEEeCCC-hhHHHHHHHHHHcCCC-ceEEccchHHHh
Q 022496 249 DTYVMCHHG-MRSLQVAQWLQTQGFR-RVFNVSGGIHAY 285 (296)
Q Consensus 249 ~iv~~C~~G-~rs~~aa~~L~~~G~~-~v~~l~GG~~~W 285 (296)
+|+|.|.+. .||..|..+|+...-. ++.+...|+..+
T Consensus 2 ~iLfvc~~N~~RS~mAEai~~~~~~~~~~~v~SaG~~~~ 40 (141)
T cd00115 2 KVLFVCTGNICRSPMAEAIFRHLAPKLDIEVDSAGTSGW 40 (141)
T ss_pred eEEEEecChhhhhHHHHHHHHHHhhhCCEEEECCCCCCc
Confidence 689999754 7999999999886433 688888998765
No 127
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=56.43 E-value=12 Score=27.64 Aligned_cols=37 Identities=22% Similarity=0.278 Sum_probs=27.2
Q ss_pred cEEEEeCCChhHHHHHHHHHH----cCCCceEEccchHHHhh
Q 022496 249 DTYVMCHHGMRSLQVAQWLQT----QGFRRVFNVSGGIHAYA 286 (296)
Q Consensus 249 ~iv~~C~~G~rs~~aa~~L~~----~G~~~v~~l~GG~~~W~ 286 (296)
+|++.|.+|..|..++..+++ .|.+ +.+...+...-.
T Consensus 2 ~Ill~C~~GaSSs~la~km~~~a~~~gi~-~~i~a~~~~e~~ 42 (99)
T cd05565 2 NVLVLCAGGGTSGLLANALNKGAKERGVP-LEAAAGAYGSHY 42 (99)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCc-EEEEEeeHHHHH
Confidence 489999999888888877765 5884 666666665543
No 128
>PLN02918 pyridoxine (pyridoxamine) 5'-phosphate oxidase
Probab=54.18 E-value=17 Score=35.45 Aligned_cols=31 Identities=23% Similarity=0.413 Sum_probs=24.6
Q ss_pred CCcEEEEeCCC---hhHHHHHHHHHHcCCCceEEc
Q 022496 247 QKDTYVMCHHG---MRSLQVAQWLQTQGFRRVFNV 278 (296)
Q Consensus 247 ~~~iv~~C~~G---~rs~~aa~~L~~~G~~~v~~l 278 (296)
.++|+|+|+.| +....+|+.|...||+ |.++
T Consensus 135 ~~~VlVlcGpGNNGGDGLVaAR~L~~~G~~-V~V~ 168 (544)
T PLN02918 135 YSRVLAICGPGNNGGDGLVAARHLHHFGYK-PFVC 168 (544)
T ss_pred CCEEEEEECCCcCHHHHHHHHHHHHHCCCc-eEEE
Confidence 36899999855 5777899999999995 6554
No 129
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=53.87 E-value=29 Score=25.22 Aligned_cols=37 Identities=16% Similarity=0.156 Sum_probs=23.9
Q ss_pred cEEEEeCCCh-hHHHHHHH----HHHcCCCceEEccchHHHhh
Q 022496 249 DTYVMCHHGM-RSLQVAQW----LQTQGFRRVFNVSGGIHAYA 286 (296)
Q Consensus 249 ~iv~~C~~G~-rs~~aa~~----L~~~G~~~v~~l~GG~~~W~ 286 (296)
+|++.|++|. .|..++.. |.+.|++ +.+....+.+-.
T Consensus 4 kILvvCgsG~~TS~m~~~ki~~~l~~~gi~-~~v~~~~~~e~~ 45 (94)
T PRK10310 4 KIIVACGGAVATSTMAAEEIKELCQSHNIP-VELIQCRVNEIE 45 (94)
T ss_pred eEEEECCCchhHHHHHHHHHHHHHHHCCCe-EEEEEecHHHHh
Confidence 6999999997 55554544 4556884 655555555443
No 130
>PRK10565 putative carbohydrate kinase; Provisional
Probab=53.74 E-value=19 Score=34.94 Aligned_cols=33 Identities=24% Similarity=0.335 Sum_probs=25.5
Q ss_pred CCCCcEEEEeC---CChhHHHHHHHHHHcCCCceEEc
Q 022496 245 DPQKDTYVMCH---HGMRSLQVAQWLQTQGFRRVFNV 278 (296)
Q Consensus 245 ~~~~~iv~~C~---~G~rs~~aa~~L~~~G~~~v~~l 278 (296)
++.++|+++|. +|.....+|++|...||+ |.++
T Consensus 58 ~~~~~v~vl~G~GNNGGDG~v~AR~L~~~G~~-V~v~ 93 (508)
T PRK10565 58 PDARHWLVLCGHGNNGGDGYVVARLAQAAGID-VTLL 93 (508)
T ss_pred CCCCeEEEEEcCCCchHHHHHHHHHHHHCCCc-eEEE
Confidence 34567999997 446778999999999995 6544
No 131
>PRK13530 arsenate reductase; Provisional
Probab=51.10 E-value=25 Score=27.29 Aligned_cols=37 Identities=24% Similarity=0.313 Sum_probs=28.2
Q ss_pred CCcEEEEeCCC-hhHHHHHHHHHHcCCCceEEccchHH
Q 022496 247 QKDTYVMCHHG-MRSLQVAQWLQTQGFRRVFNVSGGIH 283 (296)
Q Consensus 247 ~~~iv~~C~~G-~rs~~aa~~L~~~G~~~v~~l~GG~~ 283 (296)
.++|+|.|.+. -||..|..+|+.++=.++.+...|+.
T Consensus 3 ~~~vLFvC~~N~cRS~mAEal~~~~~~~~~~v~SAG~~ 40 (133)
T PRK13530 3 KKTIYFLCTGNSCRSQMAEGWGKQYLGDKWNVYSAGIE 40 (133)
T ss_pred CCEEEEEcCCchhHHHHHHHHHHHhcCCCEEEECCCCC
Confidence 45899999744 79999988888764346777888874
No 132
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=50.87 E-value=17 Score=26.50 Aligned_cols=36 Identities=11% Similarity=0.186 Sum_probs=25.0
Q ss_pred cEEEEeCCChhHHHHHHHHHH----cCCCceEEccchHHHh
Q 022496 249 DTYVMCHHGMRSLQVAQWLQT----QGFRRVFNVSGGIHAY 285 (296)
Q Consensus 249 ~iv~~C~~G~rs~~aa~~L~~----~G~~~v~~l~GG~~~W 285 (296)
+|++.|.+|..|..++..+++ .|++ +.+-..++..-
T Consensus 1 kIl~~Cg~G~sTS~~~~ki~~~~~~~~~~-~~v~~~~~~~~ 40 (96)
T cd05564 1 KILLVCSAGMSTSILVKKMKKAAEKRGID-AEIEAVPESEL 40 (96)
T ss_pred CEEEEcCCCchHHHHHHHHHHHHHHCCCc-eEEEEecHHHH
Confidence 489999999888777776655 5774 65555555443
No 133
>cd05567 PTS_IIB_mannitol PTS_IIB_mannitol: subunit IIB of enzyme II (EII) of the mannitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a mannitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIA, IIB, and IIC domains are expressed from the mtlA gene as a single protein, also known as the mannitol PTS permease, the mtl transporter, or MtlA. MtlA is only functional as a dimer with the dimer contacts occuring between the IIC domains. MtlA takes up exogenous mannitol releasing the phosphate ester into the cytoplasm in preparation for oxidation to fructose-6-phosphate by the NAD-dependent mannitol-P dehydrogenase (MtlD). The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include mannitol, chitobiose/lichenan, ascorbate, lactose, galactitol, fructose, and a s
Probab=50.66 E-value=19 Score=25.61 Aligned_cols=37 Identities=24% Similarity=0.340 Sum_probs=20.9
Q ss_pred CcEEEEeCCCh-hHHHHHHHH----HHcCCCceEEccchHHHh
Q 022496 248 KDTYVMCHHGM-RSLQVAQWL----QTQGFRRVFNVSGGIHAY 285 (296)
Q Consensus 248 ~~iv~~C~~G~-rs~~aa~~L----~~~G~~~v~~l~GG~~~W 285 (296)
++|+++|++|. .|..++..+ .+.|.. +.+-..++..+
T Consensus 1 ~kilvvCg~G~gtS~ml~~ki~~~~~~~~~~-~~v~~~~~~~~ 42 (87)
T cd05567 1 KKIVFACDAGMGSSAMGASVLRKKLKKAGLE-IPVTNSAIDEL 42 (87)
T ss_pred CEEEEECCCCccHHHHHHHHHHHHHHHCCCc-eEEEEcchhhC
Confidence 46999999996 444445444 445653 33334444443
No 134
>TIGR00197 yjeF_nterm yjeF N-terminal region. This model is built on yeast protein YNL200C and the N-terminal regions of E. coli yjeF and its orthologs in various species. The C-terminal region of yjeF and its orthologs shows similarity to hydroxyethylthiazole kinase (thiM) and other enzymes involved in thiamine biosynthesis. Yeast YKL151C and B. subtilis yxkO match the yjeF C-terminal domain but lack this region.
Probab=49.28 E-value=29 Score=29.17 Aligned_cols=33 Identities=24% Similarity=0.402 Sum_probs=25.6
Q ss_pred CCCCcEEEEeC---CChhHHHHHHHHHHcCCCceEEc
Q 022496 245 DPQKDTYVMCH---HGMRSLQVAQWLQTQGFRRVFNV 278 (296)
Q Consensus 245 ~~~~~iv~~C~---~G~rs~~aa~~L~~~G~~~v~~l 278 (296)
++.++|+++|. +|..+..+|++|...|++ |+.+
T Consensus 43 ~~~~~v~vl~G~GNNGGDGlv~AR~L~~~~v~-V~~~ 78 (205)
T TIGR00197 43 PLAGHVIIFCGPGNNGGDGFVVARHLKGFGVE-VFLL 78 (205)
T ss_pred CCCCeEEEEECCCCCccHHHHHHHHHHhCCCE-EEEE
Confidence 44678999998 556888999999887763 7665
No 135
>PLN02727 NAD kinase
Probab=48.90 E-value=20 Score=37.16 Aligned_cols=78 Identities=13% Similarity=0.161 Sum_probs=44.6
Q ss_pred cCCCHHHHHHHhcCCCCCCCcEEEecCChHHHHhhCC------------CCceecccccccCC----CCCccCCC--CCC
Q 022496 186 QDIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSL------------PGFQVLPLRQFGSW----GPDITVKF--DPQ 247 (296)
Q Consensus 186 ~~is~~ev~~~L~~~~~~~~~~llDvR~~~ey~~ghI------------pgA~~ip~~~l~~~----~~~~~~~~--~~~ 247 (296)
.+++++++....+.+ =..+|+.|++.|- .++. =..+++|......- ...+...+ ...
T Consensus 267 gQpspe~la~LA~~G----fKTIINLRpd~E~-~q~~~~ee~eAae~~GL~yVhIPVs~~~apt~EqVe~fa~~l~~slp 341 (986)
T PLN02727 267 GQVTEEGLKWLLEKG----FKTIVDLRAEIVK-DNFYQAAVDDAISSGKIEVVKIPVEVRTAPSAEQVEKFASLVSDSSK 341 (986)
T ss_pred CCCCHHHHHHHHHCC----CeEEEECCCCCcC-CCchhHHHHHHHHHcCCeEEEeecCCCCCCCHHHHHHHHHHHHhhcC
Confidence 467888887776653 2368999987662 1111 12456665332110 01111122 247
Q ss_pred CcEEEEeCCChhH--HHHHHHHH
Q 022496 248 KDTYVMCHHGMRS--LQVAQWLQ 268 (296)
Q Consensus 248 ~~iv~~C~~G~rs--~~aa~~L~ 268 (296)
+||++||.+|.|+ ..+|.+|.
T Consensus 342 kPVLvHCKSGarRAGamvA~yl~ 364 (986)
T PLN02727 342 KPIYLHSKEGVWRTSAMVSRWKQ 364 (986)
T ss_pred CCEEEECCCCCchHHHHHHHHHH
Confidence 8999999999844 35566665
No 136
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=48.83 E-value=25 Score=32.67 Aligned_cols=38 Identities=18% Similarity=0.357 Sum_probs=32.8
Q ss_pred CCCcEEEEeCCChhHHHHHHHHHHcCCCceEEccchHHH
Q 022496 246 PQKDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGIHA 284 (296)
Q Consensus 246 ~~~~iv~~C~~G~rs~~aa~~L~~~G~~~v~~l~GG~~~ 284 (296)
....+|++|++...+...+..|+.+||. ...|.|-|..
T Consensus 299 ~g~s~iVF~~t~~tt~~la~~L~~lg~~-a~~LhGqmsq 336 (476)
T KOG0330|consen 299 AGNSVIVFCNTCNTTRFLALLLRNLGFQ-AIPLHGQMSQ 336 (476)
T ss_pred cCCcEEEEEeccchHHHHHHHHHhcCcc-eecccchhhH
Confidence 3589999999999999999999999995 6678886654
No 137
>PF02302 PTS_IIB: PTS system, Lactose/Cellobiose specific IIB subunit; InterPro: IPR003501 The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes. The fold of IIB cellobiose shows similar structure to mammalian tyrosine phosphatases. This signature is often found downstream of IPR003352 from INTERPRO.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system; PDB: 1TVM_A 2WY2_D 1IIB_A 2WWV_D 1H9C_A 1E2B_A 2L2Q_A 2KYR_A 3CZC_A 3NBM_A ....
Probab=46.43 E-value=25 Score=24.80 Aligned_cols=32 Identities=19% Similarity=0.362 Sum_probs=19.8
Q ss_pred cEEEEeCCChhHHHHH-HHHH----HcCCCceEEccch
Q 022496 249 DTYVMCHHGMRSLQVA-QWLQ----TQGFRRVFNVSGG 281 (296)
Q Consensus 249 ~iv~~C~~G~rs~~aa-~~L~----~~G~~~v~~l~GG 281 (296)
+|++.|.+|..+...+ ..|+ ++|++ +....+.
T Consensus 1 kIlvvC~~Gi~TS~~~~~~i~~~~~~~gi~-~~~~~~~ 37 (90)
T PF02302_consen 1 KILVVCGSGIGTSLMVANKIKKALKELGIE-VEVSAGS 37 (90)
T ss_dssp EEEEEESSSSHHHHHHHHHHHHHHHHTTEC-EEEEEEE
T ss_pred CEEEECCChHHHHHHHHHHHHHHHHhccCc-eEEEEec
Confidence 5899999996554444 5554 46874 4444443
No 138
>PRK10499 PTS system N,N'-diacetylchitobiose-specific transporter subunit IIB; Provisional
Probab=46.33 E-value=27 Score=26.10 Aligned_cols=27 Identities=19% Similarity=0.426 Sum_probs=19.9
Q ss_pred CCcEEEEeCCChhHHHHHHHHH----HcCCC
Q 022496 247 QKDTYVMCHHGMRSLQVAQWLQ----TQGFR 273 (296)
Q Consensus 247 ~~~iv~~C~~G~rs~~aa~~L~----~~G~~ 273 (296)
.++|++.|..|..|...+..++ +.|.+
T Consensus 3 ~kkIllvC~~G~sTSll~~km~~~~~~~gi~ 33 (106)
T PRK10499 3 KKHIYLFCSAGMSTSLLVSKMRAQAEKYEVP 33 (106)
T ss_pred CCEEEEECCCCccHHHHHHHHHHHHHHCCCC
Confidence 3589999999998887774444 35664
No 139
>COG4822 CbiK Cobalamin biosynthesis protein CbiK, Co2+ chelatase [Coenzyme metabolism]
Probab=46.27 E-value=33 Score=29.18 Aligned_cols=35 Identities=23% Similarity=0.276 Sum_probs=23.5
Q ss_pred CCCCCcEEEEeCCC-hhHHHH----HHHHHHcCCCceEEc
Q 022496 244 FDPQKDTYVMCHHG-MRSLQV----AQWLQTQGFRRVFNV 278 (296)
Q Consensus 244 ~~~~~~iv~~C~~G-~rs~~a----a~~L~~~G~~~v~~l 278 (296)
+.++..+|++|.+. +-|..+ -..|.+.||+||++.
T Consensus 134 l~k~e~~vlmgHGt~h~s~~~YacLd~~~~~~~f~~v~v~ 173 (265)
T COG4822 134 LNKDEILVLMGHGTDHHSNAAYACLDHVLDEYGFDNVFVA 173 (265)
T ss_pred cCcCeEEEEEecCCCccHHHHHHHHHHHHHhcCCCceEEE
Confidence 45889999999854 333222 234667899998753
No 140
>cd00133 PTS_IIB PTS_IIB: subunit IIB of enzyme II (EII) is the central energy-coupling domain of the phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In the multienzyme PTS complex, EII is a carbohydrate-specific permease consisting of two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include chitobiose/lichenan, ascorbate, lactose, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system. The PTS is found only in bacteria, where it catalyzes the transport and phosphorylation of numerous monosaccharides, disaccharides, polyols, amino sugars, and other sugar derivatives. The four proteins (domains) forming the PTS phosphorylation cascade (EI, HPr, EIIA, and EIIB), can phosphorylate or interact with numerous non-PTS proteins thereby r
Probab=46.20 E-value=22 Score=24.15 Aligned_cols=22 Identities=27% Similarity=0.377 Sum_probs=16.6
Q ss_pred cEEEEeCCC-hhHHHHHHHHHHc
Q 022496 249 DTYVMCHHG-MRSLQVAQWLQTQ 270 (296)
Q Consensus 249 ~iv~~C~~G-~rs~~aa~~L~~~ 270 (296)
++++.|.+| ..|..++..|++.
T Consensus 1 ~il~vc~~G~~~s~~l~~~l~~~ 23 (84)
T cd00133 1 KILVVCGSGIGSSSMLAEKLEKA 23 (84)
T ss_pred CEEEECCCcHhHHHHHHHHHHHH
Confidence 478999999 6777777777653
No 141
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=44.90 E-value=23 Score=30.90 Aligned_cols=35 Identities=14% Similarity=0.142 Sum_probs=30.4
Q ss_pred CCCCCCcEEEEeCCChhHHHHHHHHHHcCCCceEE
Q 022496 243 KFDPQKDTYVMCHHGMRSLQVAQWLQTQGFRRVFN 277 (296)
Q Consensus 243 ~~~~~~~iv~~C~~G~rs~~aa~~L~~~G~~~v~~ 277 (296)
.+.++..+++||..-.........|++.||.++..
T Consensus 184 ~Lkpgg~~~~y~P~veQv~kt~~~l~~~g~~~ie~ 218 (256)
T COG2519 184 ALKPGGVVVVYSPTVEQVEKTVEALRERGFVDIEA 218 (256)
T ss_pred HhCCCcEEEEEcCCHHHHHHHHHHHHhcCccchhh
Confidence 35678899999999999999999999999987653
No 142
>PF03162 Y_phosphatase2: Tyrosine phosphatase family; InterPro: IPR004861 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents protein-tyrosine phosphatases predominantly from fungi, plants and bacteria, several of which are putative enzymes. These proteins are closely related to the Y-phosphatase and DSPc families. This entry includes the PTPase SIW14 from Saccharomyces cerevisiae (Baker's yeast), which plays a role in actin filament organisation and endocytosis.; PDB: 2Q47_A 1XRI_A.
Probab=44.87 E-value=19 Score=29.16 Aligned_cols=29 Identities=28% Similarity=0.465 Sum_probs=20.5
Q ss_pred CCCCcEEEEeCCC-hhHHHHHHHHHH-cCCC
Q 022496 245 DPQKDTYVMCHHG-MRSLQVAQWLQT-QGFR 273 (296)
Q Consensus 245 ~~~~~iv~~C~~G-~rs~~aa~~L~~-~G~~ 273 (296)
+.+.||+++|..| .|...+...|+. +|++
T Consensus 89 ~~n~PvLiHC~~G~~rTG~vvg~lRk~Q~W~ 119 (164)
T PF03162_consen 89 PRNYPVLIHCNHGKDRTGLVVGCLRKLQGWS 119 (164)
T ss_dssp GGG-SEEEE-SSSSSHHHHHHHHHHHHTTB-
T ss_pred CCCCCEEEEeCCCCcchhhHHHHHHHHcCCC
Confidence 3578999999987 688888888876 4775
No 143
>smart00012 PTPc_DSPc Protein tyrosine phosphatase, catalytic domain, undefined specificity. Protein tyrosine phosphatases. Homologues detected by this profile and not by those of "PTPc" or "DSPc" are predicted to be protein phosphatases with a similar fold to DSPs and PTPs, yet with unpredicted specificities.
Probab=42.27 E-value=31 Score=24.62 Aligned_cols=17 Identities=24% Similarity=0.299 Sum_probs=13.0
Q ss_pred CCCcEEEEeCCC-hhHHH
Q 022496 246 PQKDTYVMCHHG-MRSLQ 262 (296)
Q Consensus 246 ~~~~iv~~C~~G-~rs~~ 262 (296)
.+.+|+|+|..| +|+..
T Consensus 38 ~~~pvlVHC~~G~gRtg~ 55 (105)
T smart00012 38 SSGPVVVHCSAGVGRTGT 55 (105)
T ss_pred CCCCEEEEeCCCCChhhH
Confidence 367999999977 57763
No 144
>smart00404 PTPc_motif Protein tyrosine phosphatase, catalytic domain motif.
Probab=42.27 E-value=31 Score=24.62 Aligned_cols=17 Identities=24% Similarity=0.299 Sum_probs=13.0
Q ss_pred CCCcEEEEeCCC-hhHHH
Q 022496 246 PQKDTYVMCHHG-MRSLQ 262 (296)
Q Consensus 246 ~~~~iv~~C~~G-~rs~~ 262 (296)
.+.+|+|+|..| +|+..
T Consensus 38 ~~~pvlVHC~~G~gRtg~ 55 (105)
T smart00404 38 SSGPVVVHCSAGVGRTGT 55 (105)
T ss_pred CCCCEEEEeCCCCChhhH
Confidence 367999999977 57763
No 145
>COG0394 Wzb Protein-tyrosine-phosphatase [Signal transduction mechanisms]
Probab=41.39 E-value=33 Score=26.98 Aligned_cols=38 Identities=18% Similarity=0.118 Sum_probs=30.5
Q ss_pred CcEEEEeCCC-hhHHHHHHHHHHcCCCceEEccchHHHh
Q 022496 248 KDTYVMCHHG-MRSLQVAQWLQTQGFRRVFNVSGGIHAY 285 (296)
Q Consensus 248 ~~iv~~C~~G-~rs~~aa~~L~~~G~~~v~~l~GG~~~W 285 (296)
++|+|.|.+. -||..|-.+|+...=.++.+...|..++
T Consensus 3 ~kVLFVC~gN~cRSpmAE~l~~~~~~~~~~v~SAGt~~~ 41 (139)
T COG0394 3 MKVLFVCTGNICRSPMAEALLRHLAPDNVEVDSAGTGGH 41 (139)
T ss_pred ceEEEEcCCCcccCHHHHHHHHHhccCCeEEECCccCCC
Confidence 5799999844 7999999999886437899999987663
No 146
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=40.85 E-value=27 Score=29.57 Aligned_cols=29 Identities=24% Similarity=0.372 Sum_probs=21.1
Q ss_pred HHHHHHHHHHcCCCceEEccc-hHHHhhhc
Q 022496 260 SLQVAQWLQTQGFRRVFNVSG-GIHAYATK 288 (296)
Q Consensus 260 s~~aa~~L~~~G~~~v~~l~G-G~~~W~~~ 288 (296)
+..|-..|..+||.||.+..| |+.+|...
T Consensus 107 ~~~A~~~L~~lg~~nV~v~~gDG~~G~~~~ 136 (209)
T COG2518 107 AEQARRNLETLGYENVTVRHGDGSKGWPEE 136 (209)
T ss_pred HHHHHHHHHHcCCCceEEEECCcccCCCCC
Confidence 334445588999999876655 89999864
No 147
>TIGR02691 arsC_pI258_fam arsenate reductase (thioredoxin). This family describes the well-studied thioredoxin-dependent arsenate reductase of Staphylococcus aureaus plasmid pI258 and other mechanistically similar arsenate reductases. The mechanism involves an intramolecular disulfide bond cascade, and aligned members of this family have four absolutely conserved Cys residues. This group of arsenate reductases belongs to the low-molecular weight protein-tyrosine phosphatase family (pfam01451), as does a group of glutathione/glutaredoxin type arsenate reductases (TIGR02689). At least two other, non-homologous groups of arsenate reductases involved in arsenical resistance are also known. This enzyme reduces arsenate to arsenite, which may be more toxic but which is more easily exported.
Probab=38.60 E-value=40 Score=25.99 Aligned_cols=35 Identities=26% Similarity=0.281 Sum_probs=24.6
Q ss_pred EEEEeCC-ChhHHHHHHHHHHcCCCceEEccchHHH
Q 022496 250 TYVMCHH-GMRSLQVAQWLQTQGFRRVFNVSGGIHA 284 (296)
Q Consensus 250 iv~~C~~-G~rs~~aa~~L~~~G~~~v~~l~GG~~~ 284 (296)
|+|.|.+ -.||..|..+|+.+.=.++.+...|+..
T Consensus 1 iLFvC~~N~~RS~mAea~~~~~~~~~~~v~SaG~~~ 36 (129)
T TIGR02691 1 IYFLCTGNSCRSQMAEGWGKKYLGDEWEVYSAGIEA 36 (129)
T ss_pred CEEEcCCchHHHHHHHHHHHHhcCCCEEEEcCCCCC
Confidence 5788864 4688888888877532467777888753
No 148
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=38.48 E-value=49 Score=24.50 Aligned_cols=36 Identities=17% Similarity=0.276 Sum_probs=30.0
Q ss_pred CCCcEEEEeCCChhHHHHHHHHHHcCCCceEEccchH
Q 022496 246 PQKDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGI 282 (296)
Q Consensus 246 ~~~~iv~~C~~G~rs~~aa~~L~~~G~~~v~~l~GG~ 282 (296)
.+.+++++|.+-..+...+..|.+.++ ++..+.|++
T Consensus 27 ~~~~~lvf~~~~~~~~~~~~~l~~~~~-~~~~~~~~~ 62 (131)
T cd00079 27 KGGKVLIFCPSKKMLDELAELLRKPGI-KVAALHGDG 62 (131)
T ss_pred CCCcEEEEeCcHHHHHHHHHHHHhcCC-cEEEEECCC
Confidence 567899999998888889999988776 588888875
No 149
>cd05563 PTS_IIB_ascorbate PTS_IIB_ascorbate: subunit IIB of enzyme II (EII) of the L-ascorbate-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is an L-ascorbate-specific permease with two cytoplasmic subunits (IIA and IIB) and a transmembrane channel IIC subunit. Subunits IIA, IIB, and IIC are encoded by the sgaA, sgaB, and sgaT genes of the E. coli sgaTBA operon. In some bacteria, the IIB (SgaB) domain is fused C-terminal to the IIA (SgaT) domain. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include ascorbate, chitobiose/lichenan, lactose, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=36.60 E-value=40 Score=23.63 Aligned_cols=21 Identities=19% Similarity=0.419 Sum_probs=14.3
Q ss_pred cEEEEeCCCh-hHHHHHHHHHH
Q 022496 249 DTYVMCHHGM-RSLQVAQWLQT 269 (296)
Q Consensus 249 ~iv~~C~~G~-rs~~aa~~L~~ 269 (296)
++++.|++|. .|..+...|++
T Consensus 1 kilvvC~~G~~tS~ll~~kl~~ 22 (86)
T cd05563 1 KILAVCGSGLGSSLMLKMNVEK 22 (86)
T ss_pred CEEEECCCCccHHHHHHHHHHH
Confidence 4899999996 55555545544
No 150
>PRK13696 hypothetical protein; Provisional
Probab=34.53 E-value=65 Score=21.60 Aligned_cols=30 Identities=17% Similarity=0.324 Sum_probs=21.0
Q ss_pred eeEeeccchHHHHHHHHHHHhcCCccHHHHHHhhC
Q 022496 93 QHLLVKEDDLNLLSELQRRVSQGREDLSDLAVEHS 127 (296)
Q Consensus 93 ~~Il~~~~~~~~a~~i~~~l~~~g~~F~~la~~~S 127 (296)
.+|.+..++.+.+ . ..+ .|.+|+++..++-
T Consensus 4 K~ItI~dd~Y~~L---~-~kk-~~~SFSevi~~L~ 33 (62)
T PRK13696 4 KTITISDDVYEKL---L-EIK-GDKSFSEVIRELI 33 (62)
T ss_pred ceEEeCHHHHHHH---H-HHh-CCCCHHHHHHHHH
Confidence 4677775554333 3 564 8999999999876
No 151
>PF13399 LytR_C: LytR cell envelope-related transcriptional attenuator
Probab=33.87 E-value=75 Score=22.45 Aligned_cols=30 Identities=27% Similarity=0.302 Sum_probs=22.0
Q ss_pred CCCcEEEEeCCC--hhHHHHHHHHHHcCCCce
Q 022496 246 PQKDTYVMCHHG--MRSLQVAQWLQTQGFRRV 275 (296)
Q Consensus 246 ~~~~iv~~C~~G--~rs~~aa~~L~~~G~~~v 275 (296)
.+-+|-|+-.+| +.+..++..|+..||+.+
T Consensus 2 ~~v~V~VlNgt~~~GlA~~~a~~L~~~Gf~v~ 33 (90)
T PF13399_consen 2 SDVRVEVLNGTGVSGLAARVADALRNRGFTVV 33 (90)
T ss_pred CceEEEEEECcCCcCHHHHHHHHHHHCCCcee
Confidence 344666775544 678899999999999743
No 152
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=33.59 E-value=52 Score=31.98 Aligned_cols=36 Identities=17% Similarity=0.296 Sum_probs=31.1
Q ss_pred CCCcEEEEeCCChhHHHHHHHHHHcCCCceEEccchH
Q 022496 246 PQKDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGI 282 (296)
Q Consensus 246 ~~~~iv~~C~~G~rs~~aa~~L~~~G~~~v~~l~GG~ 282 (296)
-+.+||++.+.-..+-..|..|..+|| +++.|.||-
T Consensus 516 ~~ppiIIFvN~kk~~d~lAk~LeK~g~-~~~tlHg~k 551 (673)
T KOG0333|consen 516 FDPPIIIFVNTKKGADALAKILEKAGY-KVTTLHGGK 551 (673)
T ss_pred CCCCEEEEEechhhHHHHHHHHhhccc-eEEEeeCCc
Confidence 367899998887788889999999999 699999984
No 153
>TIGR00201 comF comF family protein. This protein is found in species that do (Bacillus subtilis, Haemophilus influenzae) or do not (E. coli, Borrelia burgdorferi) have described systems for natural transformation with exogenous DNA. It is involved in competence for transformation in Bacillus subtilis.
Probab=33.04 E-value=66 Score=26.52 Aligned_cols=33 Identities=15% Similarity=0.125 Sum_probs=28.3
Q ss_pred CCCcEEEEeC---CChhHHHHHHHHHHcCCCceEEc
Q 022496 246 PQKDTYVMCH---HGMRSLQVAQWLQTQGFRRVFNV 278 (296)
Q Consensus 246 ~~~~iv~~C~---~G~rs~~aa~~L~~~G~~~v~~l 278 (296)
+++.|++.+. +|.+...++..|.+.|-..|+++
T Consensus 151 ~~~~vllvDDV~TTGaTl~~~~~~L~~~Ga~~V~~~ 186 (190)
T TIGR00201 151 QGRNIVLVDDVVTTGATLHEIARLLLELGAASVQVW 186 (190)
T ss_pred CCCEEEEEeeeeccHHHHHHHHHHHHHcCCCEEEEE
Confidence 4678999875 99999999999999999888765
No 154
>PF02590 SPOUT_MTase: Predicted SPOUT methyltransferase; InterPro: IPR003742 This family of proteins are predicted to be SPOUT methyltransferases []. ; GO: 0008168 methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1VH0_E 4FAK_A 1TO0_G 1O6D_A 1NS5_B.
Probab=32.73 E-value=43 Score=26.90 Aligned_cols=47 Identities=21% Similarity=0.326 Sum_probs=31.4
Q ss_pred cCCCCCCCcEEEEeCCC--hhHHHHHHHHHH---cCCCceEEccchHHHhhh
Q 022496 241 TVKFDPQKDTYVMCHHG--MRSLQVAQWLQT---QGFRRVFNVSGGIHAYAT 287 (296)
Q Consensus 241 ~~~~~~~~~iv~~C~~G--~rs~~aa~~L~~---~G~~~v~~l~GG~~~W~~ 287 (296)
...++++..+|+.|..| ..|...|..|.. .|..++..+-||-.+...
T Consensus 61 l~~i~~~~~~i~Ld~~Gk~~sS~~fA~~l~~~~~~g~~~i~F~IGG~~G~~~ 112 (155)
T PF02590_consen 61 LKKIPPNDYVILLDERGKQLSSEEFAKKLERWMNQGKSDIVFIIGGADGLSE 112 (155)
T ss_dssp HCTSHTTSEEEEE-TTSEE--HHHHHHHHHHHHHTTS-EEEEEE-BTTB--H
T ss_pred HhhccCCCEEEEEcCCCccCChHHHHHHHHHHHhcCCceEEEEEecCCCCCH
Confidence 34457888899999888 578888888876 588889999998765543
No 155
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=32.48 E-value=60 Score=30.44 Aligned_cols=36 Identities=17% Similarity=0.270 Sum_probs=31.3
Q ss_pred CCcEEEEeCCChhHHHHHHHHHHcCCCceEEccchHH
Q 022496 247 QKDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGIH 283 (296)
Q Consensus 247 ~~~iv~~C~~G~rs~~aa~~L~~~G~~~v~~l~GG~~ 283 (296)
..++|+||++-..+...+..|...|+ ++..+.|++.
T Consensus 255 ~~~~lVF~~t~~~~~~l~~~L~~~g~-~v~~lhg~~~ 290 (423)
T PRK04837 255 PDRAIIFANTKHRCEEIWGHLAADGH-RVGLLTGDVA 290 (423)
T ss_pred CCeEEEEECCHHHHHHHHHHHHhCCC-cEEEecCCCC
Confidence 56799999999999999999999999 5888888863
No 156
>COG5350 Predicted protein tyrosine phosphatase [General function prediction only]
Probab=32.07 E-value=23 Score=28.44 Aligned_cols=24 Identities=21% Similarity=0.254 Sum_probs=18.4
Q ss_pred CCCCCCcEEEEeCCC-hhHHHHHHH
Q 022496 243 KFDPQKDTYVMCHHG-MRSLQVAQW 266 (296)
Q Consensus 243 ~~~~~~~iv~~C~~G-~rs~~aa~~ 266 (296)
..|+.++++++|..| .||..++..
T Consensus 89 ~wp~~apllIHC~aGISRStA~A~i 113 (172)
T COG5350 89 EWPRFAPLLIHCYAGISRSTAAALI 113 (172)
T ss_pred cCccccceeeeeccccccchHHHHH
Confidence 457889999999988 577655544
No 157
>PF13350 Y_phosphatase3: Tyrosine phosphatase family; PDB: 1YWF_A 2OZ5_B.
Probab=32.03 E-value=53 Score=26.28 Aligned_cols=27 Identities=22% Similarity=0.325 Sum_probs=15.7
Q ss_pred CCcEEEEeCCCh-hH-HHHHHHHHHcCCC
Q 022496 247 QKDTYVMCHHGM-RS-LQVAQWLQTQGFR 273 (296)
Q Consensus 247 ~~~iv~~C~~G~-rs-~~aa~~L~~~G~~ 273 (296)
..+++|+|..|. |. ..+|..|.-+|.+
T Consensus 124 ~~p~l~HC~aGKDRTG~~~alll~~lGV~ 152 (164)
T PF13350_consen 124 PGPVLFHCTAGKDRTGVVAALLLSLLGVP 152 (164)
T ss_dssp T--EEEE-SSSSSHHHHHHHHHHHHTT--
T ss_pred CCcEEEECCCCCccHHHHHHHHHHHcCCC
Confidence 369999999883 44 4556666778875
No 158
>COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=31.94 E-value=36 Score=31.91 Aligned_cols=40 Identities=15% Similarity=0.086 Sum_probs=29.1
Q ss_pred cEEEEeCCChh----------HHHHHHHHHHcCCCceEEccchHHHhhhcc
Q 022496 249 DTYVMCHHGMR----------SLQVAQWLQTQGFRRVFNVSGGIHAYATKV 289 (296)
Q Consensus 249 ~iv~~C~~G~r----------s~~aa~~L~~~G~~~v~~l~GG~~~W~~~~ 289 (296)
++-+||+-... .......|+++||+ +.+|-||+.+|..+.
T Consensus 32 ~~~~Y~GfDPTa~slHlGhlv~l~kL~~fQ~aGh~-~ivLigd~ta~IgDp 81 (401)
T COG0162 32 PLRVYIGFDPTAPSLHLGHLVPLMKLRRFQDAGHK-PIVLIGDATAMIGDP 81 (401)
T ss_pred CceEEEeeCCCCCccchhhHHHHHHHHHHHHCCCe-EEEEecccceecCCC
Confidence 88999873322 23445667788995 889999999999643
No 159
>PF04122 CW_binding_2: Putative cell wall binding repeat 2; InterPro: IPR007253 This repeat is found in multiple tandem copies in proteins including amidase enhancers [] and adhesins [].
Probab=31.83 E-value=65 Score=22.92 Aligned_cols=35 Identities=17% Similarity=0.361 Sum_probs=24.6
Q ss_pred CCcEEEEeCCChhHHHHHHHHHHcCCCceEEccchHHH
Q 022496 247 QKDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGIHA 284 (296)
Q Consensus 247 ~~~iv~~C~~G~rs~~aa~~L~~~G~~~v~~l~GG~~~ 284 (296)
+.||++. . ..-.......|+..+.++|+++ ||-..
T Consensus 50 ~~PIll~-~-~~l~~~~~~~l~~~~~~~v~ii-Gg~~~ 84 (92)
T PF04122_consen 50 NAPILLV-N-NSLPSSVKAFLKSLNIKKVYII-GGEGA 84 (92)
T ss_pred CCeEEEE-C-CCCCHHHHHHHHHcCCCEEEEE-CCCCc
Confidence 4455554 5 5555788888999999999887 76543
No 160
>COG3414 SgaB Phosphotransferase system, galactitol-specific IIB component [Carbohydrate transport and metabolism]
Probab=31.18 E-value=72 Score=23.25 Aligned_cols=26 Identities=23% Similarity=0.365 Sum_probs=18.7
Q ss_pred CcEEEEeCCChhHH-H----HHHHHHHcCCC
Q 022496 248 KDTYVMCHHGMRSL-Q----VAQWLQTQGFR 273 (296)
Q Consensus 248 ~~iv~~C~~G~rs~-~----aa~~L~~~G~~ 273 (296)
.+|++.|.+|.-|. . .=..|+++|++
T Consensus 2 ~KIL~aCG~GvgSS~~ik~kve~~l~~~gi~ 32 (93)
T COG3414 2 IKILAACGNGVGSSTMIKMKVEEVLKELGID 32 (93)
T ss_pred cEEEEECCCCccHHHHHHHHHHHHHHHcCCC
Confidence 47999999996444 3 33457888995
No 161
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=30.98 E-value=79 Score=24.24 Aligned_cols=39 Identities=18% Similarity=0.148 Sum_probs=32.0
Q ss_pred EEEEeCCChhHHHHHHHHHHcCCCceEEccchHHHhhhc
Q 022496 250 TYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGIHAYATK 288 (296)
Q Consensus 250 iv~~C~~G~rs~~aa~~L~~~G~~~v~~l~GG~~~W~~~ 288 (296)
=|+.+..|.-...++..|...|..++.++|+..-.+.+-
T Consensus 4 ~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~v~~~nl 42 (135)
T PF00899_consen 4 RVLIIGAGGVGSEVAKNLARSGVGKITLVDDDIVEPSNL 42 (135)
T ss_dssp EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSBB-GGGC
T ss_pred EEEEECcCHHHHHHHHHHHHhCCCceeecCCcceeeccc
Confidence 356778889999999999999999999999987666543
No 162
>cd05566 PTS_IIB_galactitol PTS_IIB_galactitol: subunit IIB of enzyme II (EII) of the galactitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a galactitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain that are expressed on three distinct polypeptide chains, in contrast to other PTS sugar transporters. The three genes encoding these subunits (gatA, gatB, and gatC) comprise the gatCBA operon. Galactitol PTS permease takes up exogenous galactitol, releasing the phosphate ester into the cytoplasm in preparation for oxidation and further metabolism via a modified glycolytic pathway called the tagatose-6-phosphate glycolytic pathway. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include galactitol, chitobiose/lichenan, ascorbate, lactose, mannitol, fructose, and
Probab=30.79 E-value=58 Score=22.95 Aligned_cols=25 Identities=28% Similarity=0.480 Sum_probs=16.5
Q ss_pred CcEEEEeCCChhH-HHHHHHHH----HcCC
Q 022496 248 KDTYVMCHHGMRS-LQVAQWLQ----TQGF 272 (296)
Q Consensus 248 ~~iv~~C~~G~rs-~~aa~~L~----~~G~ 272 (296)
++++++|.+|..+ ...+..|+ +.|+
T Consensus 1 ~~ilivC~~G~~tS~~l~~~i~~~~~~~~i 30 (89)
T cd05566 1 KKILVACGTGVATSTVVASKVKELLKENGI 30 (89)
T ss_pred CEEEEECCCCccHHHHHHHHHHHHHHHCCC
Confidence 3689999999744 35555444 4566
No 163
>PF05225 HTH_psq: helix-turn-helix, Psq domain; InterPro: IPR007889 This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster []. In pipsqueak this domain binds to GAGA sequence []. The pipsqueak family, which includes proteins from fungi, sea urchins, nematodes, insects, and vertebrates appear to be proteins essential for sequence-specific targeting of a polycomb group protein complex [].; GO: 0003677 DNA binding; PDB: 2COB_A.
Probab=30.44 E-value=1.1e+02 Score=18.88 Aligned_cols=27 Identities=15% Similarity=0.140 Sum_probs=18.1
Q ss_pred HHHHHHHHHhcCCccHHHHHHhhCCCC
Q 022496 104 LLSELQRRVSQGREDLSDLAVEHSICP 130 (296)
Q Consensus 104 ~a~~i~~~l~~~g~~F~~la~~~S~d~ 130 (296)
.++.....+++++.++..+|+.|.-..
T Consensus 4 ~l~~Ai~~v~~g~~S~r~AA~~ygVp~ 30 (45)
T PF05225_consen 4 DLQKAIEAVKNGKMSIRKAAKKYGVPR 30 (45)
T ss_dssp HHHHHHHHHHTTSS-HHHHHHHHT--H
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHCcCH
Confidence 466677778644499999999997653
No 164
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=30.02 E-value=56 Score=31.23 Aligned_cols=37 Identities=24% Similarity=0.294 Sum_probs=31.7
Q ss_pred CCCcEEEEeCCChhHHHHHHHHHHcCCCceEEccchHH
Q 022496 246 PQKDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGIH 283 (296)
Q Consensus 246 ~~~~iv~~C~~G~rs~~aa~~L~~~G~~~v~~l~GG~~ 283 (296)
+++..|+||.+-..+...+..|...|+. +..|.||+.
T Consensus 225 ~~~~~IIF~~s~~~~e~la~~L~~~g~~-~~~~H~~l~ 261 (470)
T TIGR00614 225 KGKSGIIYCPSRKKSEQVTASLQNLGIA-AGAYHAGLE 261 (470)
T ss_pred CCCceEEEECcHHHHHHHHHHHHhcCCC-eeEeeCCCC
Confidence 4667799999999999999999999994 778888864
No 165
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=29.63 E-value=84 Score=24.25 Aligned_cols=35 Identities=23% Similarity=0.180 Sum_probs=27.1
Q ss_pred CCCcEEEEeCCChhHHHHHHHHHHcCCCceEEccch
Q 022496 246 PQKDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGG 281 (296)
Q Consensus 246 ~~~~iv~~C~~G~rs~~aa~~L~~~G~~~v~~l~GG 281 (296)
+++++++. +.|..+..++..|...|+++|+++.=-
T Consensus 11 ~~~~vlvi-GaGg~ar~v~~~L~~~g~~~i~i~nRt 45 (135)
T PF01488_consen 11 KGKRVLVI-GAGGAARAVAAALAALGAKEITIVNRT 45 (135)
T ss_dssp TTSEEEEE-SSSHHHHHHHHHHHHTTSSEEEEEESS
T ss_pred CCCEEEEE-CCHHHHHHHHHHHHHcCCCEEEEEECC
Confidence 35555555 668899999999999999989877543
No 166
>COG1440 CelA Phosphotransferase system cellobiose-specific component IIB [Carbohydrate transport and metabolism]
Probab=29.59 E-value=63 Score=23.98 Aligned_cols=23 Identities=17% Similarity=0.400 Sum_probs=18.7
Q ss_pred CcEEEEeCCChhHHHHHHHHHHc
Q 022496 248 KDTYVMCHHGMRSLQVAQWLQTQ 270 (296)
Q Consensus 248 ~~iv~~C~~G~rs~~aa~~L~~~ 270 (296)
++|.+.|..|..+...+..+++.
T Consensus 2 k~IlLvC~aGmSTSlLV~Km~~a 24 (102)
T COG1440 2 KKILLVCAAGMSTSLLVTKMKKA 24 (102)
T ss_pred ceEEEEecCCCcHHHHHHHHHHH
Confidence 57999999998888777777664
No 167
>cd05568 PTS_IIB_bgl_like PTS_IIB_bgl_like: the PTS (phosphotransferase system) IIB domain of a family of sensory systems composed of a membrane-bound sugar-sensor (similar to BglF) and a transcription antiterminator (similar to BglG) which regulate expression of genes involved in sugar utilization. The domain architecture of the IIB-containing protein includes a region N-terminal to the IIB domain which is homologous to the BglG transcription antiterminator with an RNA-binding domain followed by two homologous domains, PRD1 and PRD2 (PTS Regulation Domains). C-terminal to the IIB domain is a domain similar to the PTS IIA domain. In this system, the BglG-like region and the IIB and IIA-like domains are all expressed together as a single multidomain protein. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include this sensory system with similarity to the bacterial
Probab=28.88 E-value=70 Score=22.03 Aligned_cols=22 Identities=23% Similarity=0.391 Sum_probs=16.4
Q ss_pred cEEEEeCCCh-hHHHHHHHHHHc
Q 022496 249 DTYVMCHHGM-RSLQVAQWLQTQ 270 (296)
Q Consensus 249 ~iv~~C~~G~-rs~~aa~~L~~~ 270 (296)
+++++|++|. .|...+..|++.
T Consensus 2 kilivC~~G~~~s~~l~~~l~~~ 24 (85)
T cd05568 2 KALVVCPSGIGTSRLLKSKLKKL 24 (85)
T ss_pred eEEEECCCCHHHHHHHHHHHHHH
Confidence 6899999995 445667777764
No 168
>PRK01565 thiamine biosynthesis protein ThiI; Provisional
Probab=28.80 E-value=91 Score=29.14 Aligned_cols=30 Identities=10% Similarity=0.145 Sum_probs=26.4
Q ss_pred CCCcEEEEeCCChhHHHHHHHHHHcCCCceE
Q 022496 246 PQKDTYVMCHHGMRSLQVAQWLQTQGFRRVF 276 (296)
Q Consensus 246 ~~~~iv~~C~~G~rs~~aa~~L~~~G~~~v~ 276 (296)
.+.++++.+.+|..|..+++++...|+. |.
T Consensus 175 ~~gkvvvllSGGiDS~vaa~l~~k~G~~-v~ 204 (394)
T PRK01565 175 TSGKALLLLSGGIDSPVAGYLAMKRGVE-IE 204 (394)
T ss_pred CCCCEEEEECCChhHHHHHHHHHHCCCE-EE
Confidence 5788999999999999999999999984 54
No 169
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=28.57 E-value=66 Score=31.93 Aligned_cols=37 Identities=19% Similarity=0.341 Sum_probs=32.3
Q ss_pred CCCcEEEEeCCChhHHHHHHHHHHcCCCceEEccchHH
Q 022496 246 PQKDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGIH 283 (296)
Q Consensus 246 ~~~~iv~~C~~G~rs~~aa~~L~~~G~~~v~~l~GG~~ 283 (296)
+++..|+||++-..+...+..|...|+ ++..|.||+.
T Consensus 235 ~~~~~IIFc~tr~~~e~la~~L~~~g~-~v~~~Ha~l~ 271 (607)
T PRK11057 235 RGKSGIIYCNSRAKVEDTAARLQSRGI-SAAAYHAGLD 271 (607)
T ss_pred CCCCEEEEECcHHHHHHHHHHHHhCCC-CEEEecCCCC
Confidence 567899999998899999999999998 4888889874
No 170
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=28.21 E-value=62 Score=31.40 Aligned_cols=34 Identities=21% Similarity=0.335 Sum_probs=30.7
Q ss_pred cEEEEeCCChhHHHHHHHHHHcCCCceEEccchHH
Q 022496 249 DTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGIH 283 (296)
Q Consensus 249 ~iv~~C~~G~rs~~aa~~L~~~G~~~v~~l~GG~~ 283 (296)
.+|++|++-..+...+..|...|| ++..+.|++.
T Consensus 275 ~~IVF~~tk~~~~~l~~~l~~~g~-~~~~lhG~l~ 308 (513)
T COG0513 275 RVIVFVRTKRLVEELAESLRKRGF-KVAALHGDLP 308 (513)
T ss_pred eEEEEeCcHHHHHHHHHHHHHCCC-eEEEecCCCC
Confidence 599999999999999999999999 5889999863
No 171
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=28.11 E-value=66 Score=30.53 Aligned_cols=36 Identities=25% Similarity=0.493 Sum_probs=31.4
Q ss_pred CCcEEEEeCCChhHHHHHHHHHHcCCCceEEccchHH
Q 022496 247 QKDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGIH 283 (296)
Q Consensus 247 ~~~iv~~C~~G~rs~~aa~~L~~~G~~~v~~l~GG~~ 283 (296)
...+|++|++-..+..++..|...|+ ++..+.|++.
T Consensus 242 ~~~~lVF~~t~~~~~~l~~~L~~~~~-~v~~~hg~~~ 277 (460)
T PRK11776 242 PESCVVFCNTKKECQEVADALNAQGF-SALALHGDLE 277 (460)
T ss_pred CCceEEEECCHHHHHHHHHHHHhCCC-cEEEEeCCCC
Confidence 45799999999999999999999998 5888889874
No 172
>PF00156 Pribosyltran: Phosphoribosyl transferase domain; InterPro: IPR000836 The name PRT comes from phosphoribosyltransferase (PRTase) enzymes, which carry out phosphoryl transfer reactions on 5-phosphoribosyl-alpha1-pyrophosphate PRPP, an activated form of ribose-5-phosphate. Members of Phosphoribosyltransferase (PRT) are catalytic and are regulatory proteins involved in nucleotide synthesis and salvage []. This includes a range of diverse phosphoribosyl transferase enzymes including adenine phosphoribosyltransferase (2.4.2.7 from EC); hypoxanthine-guanine-xanthine phosphoribosyltransferase; hypoxanthine phosphoribosyltransferase (2.4.2.8 from EC); ribose-phosphate pyrophosphokinase (2.7.6.1 from EC); amidophosphoribosyltransferase (2.4.2.14 from EC); orotate phosphoribosyltransferase (2.4.2.10 from EC);uracil phosphoribosyltransferase (2.4.2.9 from EC); and xanthine-guanine phosphoribosyltransferase (2.4.2.22 from EC). Not all PRT proteins are enzymes. For example, in some bacteria PRT proteins regulate the expression of purine and pyrimidine synthetic genes. Members of PRT are defined by the protein fold and by a short 13-residue sequence motif, The motif consists of four hydrophobic amino acids, two acidic amino acids and seven amino acids of variable character, usually including glycine and threonine. The motif has been predicted to be a PRPP-binding site in advance of structural information [, ]. Apart of this motif, different PRT proteins have a low level of sequence identity, less than 15%. The PRT sequence motif is only found in PRTases from the nucleotide synthesis and salvage pathways. Other PRTases, from the tryptophan, histidine and nicotinamide synthetic and salvage pathways, lack the PRT sequence motif and appear to be unrelated to each other and unrelated to the PRT family.; GO: 0009116 nucleoside metabolic process; PDB: 2JBH_A 1Y0B_D 2FXV_B 1GPH_1 1AO0_D 1ORO_B 1VCH_C 2WNS_A 2PRZ_B 2PS1_A ....
Probab=28.02 E-value=94 Score=23.09 Aligned_cols=33 Identities=15% Similarity=0.063 Sum_probs=27.3
Q ss_pred CCCCcEEEEe---CCChhHHHHHHHHHHcCCCceEE
Q 022496 245 DPQKDTYVMC---HHGMRSLQVAQWLQTQGFRRVFN 277 (296)
Q Consensus 245 ~~~~~iv~~C---~~G~rs~~aa~~L~~~G~~~v~~ 277 (296)
.++++|++.+ .+|.....+...|++.|...|..
T Consensus 86 ~~gk~vliVDDvi~tG~Tl~~~~~~L~~~g~~~v~~ 121 (125)
T PF00156_consen 86 IKGKRVLIVDDVIDTGGTLKEAIELLKEAGAKVVGV 121 (125)
T ss_dssp GTTSEEEEEEEEESSSHHHHHHHHHHHHTTBSEEEE
T ss_pred ccceeEEEEeeeEcccHHHHHHHHHHHhCCCcEEEE
Confidence 4678888885 59999999999999999876543
No 173
>PRK04923 ribose-phosphate pyrophosphokinase; Provisional
Probab=28.01 E-value=90 Score=28.31 Aligned_cols=33 Identities=15% Similarity=0.098 Sum_probs=28.2
Q ss_pred CCCcEEEE---eCCChhHHHHHHHHHHcCCCceEEc
Q 022496 246 PQKDTYVM---CHHGMRSLQVAQWLQTQGFRRVFNV 278 (296)
Q Consensus 246 ~~~~iv~~---C~~G~rs~~aa~~L~~~G~~~v~~l 278 (296)
+++.+|++ |.+|.+-..++..|++.|-..|+.+
T Consensus 216 ~Gr~viIVDDIidTG~Tl~~aa~~Lk~~GA~~V~~~ 251 (319)
T PRK04923 216 QGKTCVLVDDLVDTAGTLCAAAAALKQRGALKVVAY 251 (319)
T ss_pred CCCEEEEEecccCchHHHHHHHHHHHHCCCCEEEEE
Confidence 67888888 4599999999999999999888643
No 174
>PLN02541 uracil phosphoribosyltransferase
Probab=27.77 E-value=1.1e+02 Score=26.61 Aligned_cols=32 Identities=13% Similarity=0.081 Sum_probs=25.6
Q ss_pred CCCCcEEEEeC---CChhHHHHHHHHHHcCCC--ceE
Q 022496 245 DPQKDTYVMCH---HGMRSLQVAQWLQTQGFR--RVF 276 (296)
Q Consensus 245 ~~~~~iv~~C~---~G~rs~~aa~~L~~~G~~--~v~ 276 (296)
+.++.|++++. +|..+..+...|++.|.+ ++.
T Consensus 155 ~~~~~VlllDpmLATGgS~~~ai~~L~~~Gv~~~~I~ 191 (244)
T PLN02541 155 PEGSRVLVVDPMLATGGTIVAAIDELVSRGASVEQIR 191 (244)
T ss_pred CCCCEEEEECcchhhhHHHHHHHHHHHHcCCCcccEE
Confidence 44567888875 899999999999999986 554
No 175
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=26.93 E-value=91 Score=29.25 Aligned_cols=37 Identities=19% Similarity=0.373 Sum_probs=32.0
Q ss_pred CCCcEEEEeCCChhHHHHHHHHHHcCCCceEEccchHH
Q 022496 246 PQKDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGIH 283 (296)
Q Consensus 246 ~~~~iv~~C~~G~rs~~aa~~L~~~G~~~v~~l~GG~~ 283 (296)
...++|+||++-..+...+..|...|+. +..+.|++.
T Consensus 244 ~~~~~lVF~~s~~~~~~l~~~L~~~~~~-~~~l~g~~~ 280 (434)
T PRK11192 244 EVTRSIVFVRTRERVHELAGWLRKAGIN-CCYLEGEMV 280 (434)
T ss_pred CCCeEEEEeCChHHHHHHHHHHHhCCCC-EEEecCCCC
Confidence 4578999999999999999999999984 778889863
No 176
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=26.88 E-value=77 Score=31.26 Aligned_cols=37 Identities=27% Similarity=0.311 Sum_probs=32.1
Q ss_pred CCCcEEEEeCCChhHHHHHHHHHHcCCCceEEccchHH
Q 022496 246 PQKDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGIH 283 (296)
Q Consensus 246 ~~~~iv~~C~~G~rs~~aa~~L~~~G~~~v~~l~GG~~ 283 (296)
...++||||++-..+..++..|...|+ ++..+.|++.
T Consensus 256 ~~~k~LVF~nt~~~ae~l~~~L~~~g~-~v~~lhg~l~ 292 (572)
T PRK04537 256 EGARTMVFVNTKAFVERVARTLERHGY-RVGVLSGDVP 292 (572)
T ss_pred cCCcEEEEeCCHHHHHHHHHHHHHcCC-CEEEEeCCCC
Confidence 467899999999999999999999999 5888888753
No 177
>COG1986 Inosine/xanthosine triphosphatase [Nucleotide transport and metabolism]
Probab=26.87 E-value=87 Score=25.66 Aligned_cols=42 Identities=17% Similarity=0.234 Sum_probs=35.4
Q ss_pred HHHHHHHHhcCCccHHHHHHhhCCCC-cccCCcccccccCCCCc
Q 022496 105 LSELQRRVSQGREDLSDLAVEHSICP-SKGEGGMLGWVRKGQLV 147 (296)
Q Consensus 105 a~~i~~~l~~~g~~F~~la~~~S~d~-~~~~gG~lg~~~~~~l~ 147 (296)
-..+.++++ .|..|.++..+|+.-+ ...+.|.+|.++.+.+.
T Consensus 109 P~~v~~~vl-~G~ElG~v~~~~~g~~~ig~~~GaIG~lT~g~lt 151 (175)
T COG1986 109 PPRVLEEVL-QGKELGEVMEEYTGIDEIGRKEGAIGVLTNGKLT 151 (175)
T ss_pred CHHHHHHHH-ccccHHHHHHHHcCCCCcCcccceEEEeeCCeee
Confidence 356788886 8999999999999875 77889999999988764
No 178
>PRK07199 phosphoribosylpyrophosphate synthetase; Provisional
Probab=26.34 E-value=94 Score=27.90 Aligned_cols=33 Identities=15% Similarity=0.141 Sum_probs=28.1
Q ss_pred CCCcEEEEe---CCChhHHHHHHHHHHcCCCceEEc
Q 022496 246 PQKDTYVMC---HHGMRSLQVAQWLQTQGFRRVFNV 278 (296)
Q Consensus 246 ~~~~iv~~C---~~G~rs~~aa~~L~~~G~~~v~~l 278 (296)
+++.+|+++ .+|.+-..+++.|++.|-.+|+.+
T Consensus 210 ~Gr~vIIVDDIidTG~Tl~~aa~~Lk~~GA~~V~~~ 245 (301)
T PRK07199 210 AGRTPVLVDDIVSTGRTLIEAARQLRAAGAASPDCV 245 (301)
T ss_pred CCCEEEEEecccCcHHHHHHHHHHHHHCCCcEEEEE
Confidence 678899985 599999999999999999877644
No 179
>TIGR03372 putres_am_tran putrescine aminotransferase. Members of this family are putrescine aminotransferase, as found in Escherichia coli, Erwinia carotovora subsp. atroseptica, and closely related species. This pyridoxal phosphate enzyme, as characterized in E. coli, can act also on cadaverine and, more weakly, spermidine.
Probab=26.24 E-value=85 Score=29.86 Aligned_cols=40 Identities=23% Similarity=0.336 Sum_probs=29.8
Q ss_pred CCcEEEEeCCChhHHHHHHHHHHc-----CCCceEEccchHHHhh
Q 022496 247 QKDTYVMCHHGMRSLQVAQWLQTQ-----GFRRVFNVSGGIHAYA 286 (296)
Q Consensus 247 ~~~iv~~C~~G~rs~~aa~~L~~~-----G~~~v~~l~GG~~~W~ 286 (296)
.-..+++|++|.-|-.+|..|... |-..|....|||.+|.
T Consensus 133 ~~~~v~f~~SGsEA~e~AlklAr~~t~~~gr~~ii~~~~~yHG~t 177 (442)
T TIGR03372 133 KLKYSFFCNSGTESVEAALKLAKAYQSPRGKFTFIAASGAFHGKS 177 (442)
T ss_pred CcCEEEEeCCchHHHHHHHHHHHHHHhhcCCcEEEEECCCccCCC
Confidence 335788899999988777777653 5445778899888875
No 180
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=26.23 E-value=67 Score=24.10 Aligned_cols=28 Identities=14% Similarity=0.247 Sum_probs=22.7
Q ss_pred EEEeCCChhHHHHHHHHHHcCCCceEEc
Q 022496 251 YVMCHHGMRSLQVAQWLQTQGFRRVFNV 278 (296)
Q Consensus 251 v~~C~~G~rs~~aa~~L~~~G~~~v~~l 278 (296)
|+..++|.-+..+.+.++++|++-|.++
T Consensus 5 vLIanrGeia~r~~ra~r~~Gi~tv~v~ 32 (110)
T PF00289_consen 5 VLIANRGEIAVRIIRALRELGIETVAVN 32 (110)
T ss_dssp EEESS-HHHHHHHHHHHHHTTSEEEEEE
T ss_pred EEEECCCHHHHHHHHHHHHhCCcceecc
Confidence 6677888889999999999999866555
No 181
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=26.04 E-value=74 Score=31.39 Aligned_cols=36 Identities=14% Similarity=0.300 Sum_probs=31.1
Q ss_pred CCcEEEEeCCChhHHHHHHHHHHcCCCceEEccchHH
Q 022496 247 QKDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGIH 283 (296)
Q Consensus 247 ~~~iv~~C~~G~rs~~aa~~L~~~G~~~v~~l~GG~~ 283 (296)
+.+.|+||.+-..+...+..|...|+. +..|.||+.
T Consensus 224 ~~~~IIf~~sr~~~e~la~~L~~~g~~-~~~~H~~l~ 259 (591)
T TIGR01389 224 GQSGIIYASSRKKVEELAERLESQGIS-ALAYHAGLS 259 (591)
T ss_pred CCCEEEEECcHHHHHHHHHHHHhCCCC-EEEEECCCC
Confidence 578899999988899999999999985 778888874
No 182
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=25.88 E-value=74 Score=31.46 Aligned_cols=37 Identities=19% Similarity=0.424 Sum_probs=32.3
Q ss_pred CCCcEEEEeCCChhHHHHHHHHHHcCCCceEEccchHH
Q 022496 246 PQKDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGIH 283 (296)
Q Consensus 246 ~~~~iv~~C~~G~rs~~aa~~L~~~G~~~v~~l~GG~~ 283 (296)
.+..-|+||.+=..+...|.+|...|+ ++..|.||+.
T Consensus 229 ~~~~GIIYc~sRk~~E~ia~~L~~~g~-~a~~YHaGl~ 265 (590)
T COG0514 229 LSKSGIIYCLTRKKVEELAEWLRKNGI-SAGAYHAGLS 265 (590)
T ss_pred cCCCeEEEEeeHHhHHHHHHHHHHCCC-ceEEecCCCC
Confidence 566789999999999999999999999 5888889874
No 183
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=25.53 E-value=77 Score=28.74 Aligned_cols=38 Identities=8% Similarity=0.062 Sum_probs=32.7
Q ss_pred CCCCcEEEEeCCChhHHHHHHHHHHcCCC-ceEEccchH
Q 022496 245 DPQKDTYVMCHHGMRSLQVAQWLQTQGFR-RVFNVSGGI 282 (296)
Q Consensus 245 ~~~~~iv~~C~~G~rs~~aa~~L~~~G~~-~v~~l~GG~ 282 (296)
.++.+++++|++=..+...+..|++.|.. ++..+.|++
T Consensus 220 ~~~~~~lVf~~t~~~~~~~~~~L~~~~~~~~~~~~h~~~ 258 (358)
T TIGR01587 220 KKGGKIAIIVNTVDRAQEFYQQLKENAPEEEIMLLHSRF 258 (358)
T ss_pred hCCCeEEEEECCHHHHHHHHHHHHhhcCCCeEEEEECCC
Confidence 45789999999988999999999998874 688999986
No 184
>TIGR00342 thiazole biosynthesis/tRNA modification protein ThiI. The protein product of the thiI gene is required for the synthesis of the thiazole moiety in thiamine biosynthesis. It also acts in the generation of 4-thiouridine in tRNA, and may occur in species (such as Mycoplasma genitalium) that lack de novo thiamine biosynthesis.
Probab=25.36 E-value=1.1e+02 Score=28.25 Aligned_cols=30 Identities=23% Similarity=0.285 Sum_probs=26.2
Q ss_pred CCCcEEEEeCCChhHHHHHHHHHHcCCCceE
Q 022496 246 PQKDTYVMCHHGMRSLQVAQWLQTQGFRRVF 276 (296)
Q Consensus 246 ~~~~iv~~C~~G~rs~~aa~~L~~~G~~~v~ 276 (296)
.+.++++...+|..|..++++|.+.|+. |.
T Consensus 171 ~~~kvlvllSGGiDS~vaa~ll~krG~~-V~ 200 (371)
T TIGR00342 171 TQGKVLALLSGGIDSPVAAFMMMKRGCR-VV 200 (371)
T ss_pred cCCeEEEEecCCchHHHHHHHHHHcCCe-EE
Confidence 5678999999999999999999999984 53
No 185
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=24.89 E-value=82 Score=29.93 Aligned_cols=37 Identities=16% Similarity=0.224 Sum_probs=31.2
Q ss_pred CCCcEEEEeCCChhHHHHHHHHHHcCCCceEEccchHH
Q 022496 246 PQKDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGIH 283 (296)
Q Consensus 246 ~~~~iv~~C~~G~rs~~aa~~L~~~G~~~v~~l~GG~~ 283 (296)
....+|+||++-..+...+..|...|+. +..+.|++.
T Consensus 244 ~~~~~lVF~~t~~~~~~l~~~L~~~g~~-~~~lhg~~~ 280 (456)
T PRK10590 244 NWQQVLVFTRTKHGANHLAEQLNKDGIR-SAAIHGNKS 280 (456)
T ss_pred CCCcEEEEcCcHHHHHHHHHHHHHCCCC-EEEEECCCC
Confidence 3468999999988899999999999994 778888864
No 186
>PLN02482 glutamate-1-semialdehyde 2,1-aminomutase
Probab=24.71 E-value=71 Score=30.71 Aligned_cols=38 Identities=16% Similarity=0.229 Sum_probs=30.8
Q ss_pred cEEEEeCCChhHHHHHHHHHHc--CCCceEEccchHHHhh
Q 022496 249 DTYVMCHHGMRSLQVAQWLQTQ--GFRRVFNVSGGIHAYA 286 (296)
Q Consensus 249 ~iv~~C~~G~rs~~aa~~L~~~--G~~~v~~l~GG~~~W~ 286 (296)
.-|++|++|..+..+|..|... |=+.|..+.|||.+|.
T Consensus 156 ~~v~f~~SGsEA~e~AlklAR~~tgr~~Ii~~~g~YHG~~ 195 (474)
T PLN02482 156 EMVRFVNSGTEACMGVLRLARAYTGREKIIKFEGCYHGHA 195 (474)
T ss_pred CEEEEeCChHHHHHHHHHHHHHhcCCCEEEEECCccCCCc
Confidence 4678899999999888888764 5556888899999986
No 187
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=24.16 E-value=1.2e+02 Score=22.23 Aligned_cols=28 Identities=21% Similarity=0.229 Sum_probs=22.3
Q ss_pred CCCcEEEEeCCChhH-HHHHHHHHHcCCC
Q 022496 246 PQKDTYVMCHHGMRS-LQVAQWLQTQGFR 273 (296)
Q Consensus 246 ~~~~iv~~C~~G~rs-~~aa~~L~~~G~~ 273 (296)
.+++++|..+++.++ ...+..|+.+|+.
T Consensus 29 ~g~~~~~lTNns~~s~~~~~~~L~~~Gi~ 57 (101)
T PF13344_consen 29 RGKPVVFLTNNSSRSREEYAKKLKKLGIP 57 (101)
T ss_dssp TTSEEEEEES-SSS-HHHHHHHHHHTTTT
T ss_pred cCCCEEEEeCCCCCCHHHHHHHHHhcCcC
Confidence 578999999988777 6778889999996
No 188
>PRK07046 aminotransferase; Validated
Probab=23.77 E-value=68 Score=30.56 Aligned_cols=37 Identities=8% Similarity=0.135 Sum_probs=29.5
Q ss_pred EEEEeCCChhHHHHHHHHHHc--CCCceEEccchHHHhh
Q 022496 250 TYVMCHHGMRSLQVAQWLQTQ--GFRRVFNVSGGIHAYA 286 (296)
Q Consensus 250 iv~~C~~G~rs~~aa~~L~~~--G~~~v~~l~GG~~~W~ 286 (296)
-|.+|++|..|..+|..|... |=+.|....|||.+|.
T Consensus 132 ~v~F~nSGtEA~e~AlrlAR~~TGr~~ii~~~g~YHG~~ 170 (453)
T PRK07046 132 YWQVATTATDANRFVLRWARAVTGRPKILVFNGCYHGTV 170 (453)
T ss_pred EEEEECCHHHHHHHHHHHHHHhhCCCEEEEECCCCCCCc
Confidence 468899999998888777664 5556888899999883
No 189
>TIGR00258 inosine/xanthosine triphosphatase.
Probab=23.76 E-value=1.2e+02 Score=24.65 Aligned_cols=42 Identities=17% Similarity=0.254 Sum_probs=34.8
Q ss_pred HHHHHHHHhcCCccHHHHHHhhCCC-CcccCCcccccccCCCCc
Q 022496 105 LSELQRRVSQGREDLSDLAVEHSIC-PSKGEGGMLGWVRKGQLV 147 (296)
Q Consensus 105 a~~i~~~l~~~g~~F~~la~~~S~d-~~~~~gG~lg~~~~~~l~ 147 (296)
-..+.++|+ .|.-+.++..++..- ..+.++|.+|.++.+.+.
T Consensus 103 P~~v~~~i~-~G~ELg~vmd~~~g~~~i~~~~GaIG~LT~g~v~ 145 (163)
T TIGR00258 103 PKVVVEKVL-EGEEVGPVMEEYTGIDEIGRKEGAIGYLTAGKLT 145 (163)
T ss_pred CHHHHHHHH-cCCcHHHHHHHHhCCCCcCCCCceEEEecCCccc
Confidence 356777885 889999999987766 488999999999998774
No 190
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=23.68 E-value=1.2e+02 Score=22.14 Aligned_cols=29 Identities=21% Similarity=0.261 Sum_probs=19.6
Q ss_pred EEEeCCChhHHHHHHHHHHcCCCceEEccc
Q 022496 251 YVMCHHGMRSLQVAQWLQTQGFRRVFNVSG 280 (296)
Q Consensus 251 v~~C~~G~rs~~aa~~L~~~G~~~v~~l~G 280 (296)
|+.|+.|..+...+..|.+.|+ +|.+++-
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~-~vvvid~ 29 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGI-DVVVIDR 29 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTS-EEEEEES
T ss_pred eEEEcCCHHHHHHHHHHHhCCC-EEEEEEC
Confidence 5678888888888888888553 4666544
No 191
>PRK09162 hypoxanthine-guanine phosphoribosyltransferase; Provisional
Probab=23.65 E-value=1.1e+02 Score=25.04 Aligned_cols=34 Identities=12% Similarity=0.154 Sum_probs=28.3
Q ss_pred CCCcEEEEeC---CChhHHHHHHHHHHcCCCceEEcc
Q 022496 246 PQKDTYVMCH---HGMRSLQVAQWLQTQGFRRVFNVS 279 (296)
Q Consensus 246 ~~~~iv~~C~---~G~rs~~aa~~L~~~G~~~v~~l~ 279 (296)
+++.|++.+. +|.+...++..|++.|-.+|+.+.
T Consensus 96 ~gk~VLIVDDIidTG~Tl~~~~~~Lk~~Ga~~V~~av 132 (181)
T PRK09162 96 KGRTVLVVDDILDEGHTLAAIRDRCLEMGAAEVYSAV 132 (181)
T ss_pred CCCEEEEEccccCcHHHHHHHHHHHHhCCCCEEEEEE
Confidence 5788888854 999999999999999988887653
No 192
>PF14572 Pribosyl_synth: Phosphoribosyl synthetase-associated domain; PDB: 2H07_B 2H06_B 3S5J_B 2HCR_A 3EFH_A 2H08_A 1DKR_B 1DKU_B 1IBS_B 2JI4_A ....
Probab=23.39 E-value=1.1e+02 Score=25.31 Aligned_cols=33 Identities=18% Similarity=0.342 Sum_probs=26.1
Q ss_pred CCCcEEEE---eCCChhHHHHHHHHHHcCCCceEEc
Q 022496 246 PQKDTYVM---CHHGMRSLQVAQWLQTQGFRRVFNV 278 (296)
Q Consensus 246 ~~~~iv~~---C~~G~rs~~aa~~L~~~G~~~v~~l 278 (296)
+++..|++ |.+|..-..+|..|++.|=..||.+
T Consensus 82 ~gk~~IIvDDiIdtg~Tl~~aA~~Lk~~GA~~V~~~ 117 (184)
T PF14572_consen 82 KGKICIIVDDIIDTGGTLIKAAELLKERGAKKVYAC 117 (184)
T ss_dssp TTSEEEEEEEEESSTHHHHHHHHHHHHTTESEEEEE
T ss_pred cCCeEeeecccccchHHHHHHHHHHHHcCCCEEEEE
Confidence 56677777 4588888899999999998888754
No 193
>PRK04192 V-type ATP synthase subunit A; Provisional
Probab=23.31 E-value=1.2e+02 Score=29.95 Aligned_cols=30 Identities=13% Similarity=0.426 Sum_probs=24.3
Q ss_pred hHHHHHHHHHHcCCCceEEccchHHHhhhcc
Q 022496 259 RSLQVAQWLQTQGFRRVFNVSGGIHAYATKV 289 (296)
Q Consensus 259 rs~~aa~~L~~~G~~~v~~l~GG~~~W~~~~ 289 (296)
.+...|.+++++|| +|.++-.++.-|..+.
T Consensus 311 tgiTiAEYfRd~G~-~Vllm~DStSR~AeAl 340 (586)
T PRK04192 311 TGITIAEYYRDMGY-DVLLMADSTSRWAEAL 340 (586)
T ss_pred HHHHHHHHHHHCCC-CEEEEecChHHHHHHH
Confidence 34456888999998 6999999999999653
No 194
>PRK03941 NTPase; Reviewed
Probab=23.24 E-value=1.2e+02 Score=25.00 Aligned_cols=42 Identities=17% Similarity=0.208 Sum_probs=34.9
Q ss_pred HHHHHHHHhcCCccHHHHHHhhCCC-CcccCCcccccccCCCCc
Q 022496 105 LSELQRRVSQGREDLSDLAVEHSIC-PSKGEGGMLGWVRKGQLV 147 (296)
Q Consensus 105 a~~i~~~l~~~g~~F~~la~~~S~d-~~~~~gG~lg~~~~~~l~ 147 (296)
-..+.++|+ .|..+.++..++... ..+.++|.+|.++.+.+.
T Consensus 108 P~~v~~~i~-~G~ELg~vmd~~~g~~ni~~~~GaIG~LT~g~vt 150 (174)
T PRK03941 108 PPLVVEEVL-KGKEVGDVMSELTGIKELGRKIGAIGFLSRGMLD 150 (174)
T ss_pred CHHHHHHHH-cCCCHHHHHHHHhCCCCcCcCCceEEEecCCcee
Confidence 366788885 899999999987766 488999999999998764
No 195
>cd00047 PTPc Protein tyrosine phosphatases (PTP) catalyze the dephosphorylation of phosphotyrosine peptides; they regulate phosphotyrosine levels in signal transduction pathways. The depth of the active site cleft renders the enzyme specific for phosphorylated Tyr (pTyr) residues, instead of pSer or pThr. This family has a distinctive active site signature motif, HCSAGxGRxG. Characterized as either transmembrane, receptor-like or non-transmembrane (soluble) PTPs. Receptor-like PTP domains tend to occur in two copies in the cytoplasmic region of the transmembrane proteins, only one copy may be active.
Probab=23.23 E-value=65 Score=27.24 Aligned_cols=17 Identities=24% Similarity=0.249 Sum_probs=13.2
Q ss_pred CCCcEEEEeCCC-hhHHH
Q 022496 246 PQKDTYVMCHHG-MRSLQ 262 (296)
Q Consensus 246 ~~~~iv~~C~~G-~rs~~ 262 (296)
...+|+|+|..| +||..
T Consensus 165 ~~~pivVHC~~G~gRsg~ 182 (231)
T cd00047 165 GSGPIVVHCSAGVGRTGT 182 (231)
T ss_pred CCCCeEEECCCCCCccch
Confidence 467999999977 67754
No 196
>PF02879 PGM_PMM_II: Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II; InterPro: IPR005845 The alpha-D-phosphohexomutase superfamily is composed of four related enzymes, each of which catalyses a phosphoryl transfer on their sugar substrates: phosphoglucomutase (PGM), phosphoglucomutase/phosphomannomutase (PGM/PMM), phosphoglucosamine mutase (PNGM), and phosphoacetylglucosamine mutase (PAGM) []. PGM (5.4.2.2 from EC) converts D-glucose 1-phosphate into D-glucose 6-phosphate, and participates in both the breakdown and synthesis of glucose []. PGM/PMM (5.4.2.2 from EC; 5.4.2.8 from EC) are primarily bacterial enzymes that use either glucose or mannose as substrate, participating in the biosynthesis of a variety of carbohydrates such as lipopolysaccharides and alginate [, ]. Both PNGM (5.4.2.3 from EC) and PAGM (5.4.2.10 from EC) are involved in the biosynthesis of UDP-N-acetylglucosamine [, ]. Despite differences in substrate specificity, these enzymes share a similar catalytic mechanism, converting 1-phospho-sugars to 6-phospho-sugars via a biphosphorylated 1,6-phospho-sugar. The active enzyme is phosphorylated at a conserved serine residue and binds one magnesium ion; residues around the active site serine are well conserved among family members. The reaction mechanism involves phosphoryl transfer from the phosphoserine to the substrate to create a biophosphorylated sugar, followed by a phosphoryl transfer from the substrate back to the enzyme []. The structures of PGM and PGM/PMM have been determined, and were found to be very similar in topology. These enzymes are both composed of four domains and a large central active site cleft, where each domain contains residues essential for catalysis and/or substrate recognition. Domain I contains the catalytic phosphoserine, domain II contains a metal-binding loop to coordinate the magnesium ion, domain III contains the sugar-binding loop that recognises the two different binding orientations of the 1- and 6-phospho-sugars, and domain IV contains a phosphate-binding site required for orienting the incoming phospho-sugar substrate. This entry represents domain II found in alpha-D-phosphohexomutase enzymes. This domain has a 3-layer alpha/beta/alpha topology.; GO: 0016868 intramolecular transferase activity, phosphotransferases, 0005975 carbohydrate metabolic process; PDB: 2F7L_A 3PDK_B 1KFQ_B 1KFI_A 1C47_A 1VKL_B 1LXT_A 1JDY_B 3PMG_A 1C4G_B ....
Probab=23.21 E-value=1.3e+02 Score=21.73 Aligned_cols=33 Identities=21% Similarity=0.274 Sum_probs=26.1
Q ss_pred CCcEEEEeCCChhHHHHHHHHHHcCCCceEEccc
Q 022496 247 QKDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSG 280 (296)
Q Consensus 247 ~~~iv~~C~~G~rs~~aa~~L~~~G~~~v~~l~G 280 (296)
+-+|++-|..|.-+..+...|..+|.+ +..+..
T Consensus 21 ~~kivvD~~~G~~~~~~~~ll~~lg~~-~~~~n~ 53 (104)
T PF02879_consen 21 GLKIVVDCMNGAGSDILPRLLERLGCD-VIELNC 53 (104)
T ss_dssp TCEEEEE-TTSTTHHHHHHHHHHTTCE-EEEESS
T ss_pred CCEEEEECCCCHHHHHHHHHHHHcCCc-EEEEec
Confidence 448999999999999999999999995 444433
No 197
>KOG2585 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.19 E-value=1e+02 Score=29.23 Aligned_cols=30 Identities=20% Similarity=0.384 Sum_probs=22.4
Q ss_pred cEEEEeCCCh---hHHHHHHHHHHcCCCceEEc
Q 022496 249 DTYVMCHHGM---RSLQVAQWLQTQGFRRVFNV 278 (296)
Q Consensus 249 ~iv~~C~~G~---rs~~aa~~L~~~G~~~v~~l 278 (296)
.|.+.|..|. ....+++.|...||+.+..|
T Consensus 268 ~V~Ilcgpgnnggdg~v~gRHL~~~G~~~vi~~ 300 (453)
T KOG2585|consen 268 LVAILCGPGNNGGDGLVCGRHLAQHGYTPVIYY 300 (453)
T ss_pred eEEEEeCCCCccchhHHHHHHHHHcCceeEEEe
Confidence 3778887554 45678999999999876544
No 198
>PRK02458 ribose-phosphate pyrophosphokinase; Provisional
Probab=23.11 E-value=1.1e+02 Score=27.80 Aligned_cols=33 Identities=15% Similarity=0.311 Sum_probs=28.0
Q ss_pred CCCcEEEEe---CCChhHHHHHHHHHHcCCCceEEc
Q 022496 246 PQKDTYVMC---HHGMRSLQVAQWLQTQGFRRVFNV 278 (296)
Q Consensus 246 ~~~~iv~~C---~~G~rs~~aa~~L~~~G~~~v~~l 278 (296)
+++.+|+++ .+|.+-..++..|++.|-..|+.+
T Consensus 217 ~gk~viIVDDIidTG~Tl~~aa~~Lk~~GA~~V~~~ 252 (323)
T PRK02458 217 AGKKAILIDDILNTGKTFAEAAKIVEREGATEIYAV 252 (323)
T ss_pred CCCEEEEEcceeCcHHHHHHHHHHHHhCCCCcEEEE
Confidence 678888884 599999999999999999988743
No 199
>PTZ00150 phosphoglucomutase-2-like protein; Provisional
Probab=23.06 E-value=1e+02 Score=30.42 Aligned_cols=31 Identities=19% Similarity=0.281 Sum_probs=26.8
Q ss_pred CCcEEEEeCCChhHHHHHHHHHHcCCCceEE
Q 022496 247 QKDTYVMCHHGMRSLQVAQWLQTQGFRRVFN 277 (296)
Q Consensus 247 ~~~iv~~C~~G~rs~~aa~~L~~~G~~~v~~ 277 (296)
+-+||+-|..|.-+..+...|+++|++++.+
T Consensus 228 ~lkIv~d~~~G~g~~~~~~iL~~lG~~~~~~ 258 (584)
T PTZ00150 228 KVKIVYTAMHGVGTRFVQKALHTVGLPNLLS 258 (584)
T ss_pred CCeEEEeCCCCccHHHHHHHHHhcCCCCceE
Confidence 5589999999999999999999999986533
No 200
>PTZ00110 helicase; Provisional
Probab=23.00 E-value=1e+02 Score=30.19 Aligned_cols=37 Identities=8% Similarity=0.154 Sum_probs=31.7
Q ss_pred CCCcEEEEeCCChhHHHHHHHHHHcCCCceEEccchHH
Q 022496 246 PQKDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGIH 283 (296)
Q Consensus 246 ~~~~iv~~C~~G~rs~~aa~~L~~~G~~~v~~l~GG~~ 283 (296)
...++|++|++-..+...+..|+..|+. +..+.|++.
T Consensus 376 ~~~k~LIF~~t~~~a~~l~~~L~~~g~~-~~~ihg~~~ 412 (545)
T PTZ00110 376 DGDKILIFVETKKGADFLTKELRLDGWP-ALCIHGDKK 412 (545)
T ss_pred cCCeEEEEecChHHHHHHHHHHHHcCCc-EEEEECCCc
Confidence 5679999999999999999999999995 667888763
No 201
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=22.92 E-value=1.4e+02 Score=27.72 Aligned_cols=29 Identities=14% Similarity=0.423 Sum_probs=23.5
Q ss_pred HHHHHHHHHHcCCCceEEccchHHHhhhcc
Q 022496 260 SLQVAQWLQTQGFRRVFNVSGGIHAYATKV 289 (296)
Q Consensus 260 s~~aa~~L~~~G~~~v~~l~GG~~~W~~~~ 289 (296)
+...|+.++++|+ +|.++..++.-|.++.
T Consensus 242 a~tiAEYfrd~G~-dVll~~Ds~tR~A~A~ 270 (369)
T cd01134 242 GITIAEYFRDMGY-NVALMADSTSRWAEAL 270 (369)
T ss_pred HHHHHHHHHHcCC-CEEEEEcChhHHHHHH
Confidence 4456888999998 6999999999998653
No 202
>COG0462 PrsA Phosphoribosylpyrophosphate synthetase [Nucleotide transport and metabolism / Amino acid transport and metabolism]
Probab=22.90 E-value=1.4e+02 Score=26.99 Aligned_cols=33 Identities=21% Similarity=0.341 Sum_probs=28.2
Q ss_pred CCCcEEEEeC---CChhHHHHHHHHHHcCCCceEEc
Q 022496 246 PQKDTYVMCH---HGMRSLQVAQWLQTQGFRRVFNV 278 (296)
Q Consensus 246 ~~~~iv~~C~---~G~rs~~aa~~L~~~G~~~v~~l 278 (296)
+++.+|+.+. +|++-..||.+|++.|=++|+.+
T Consensus 213 ~gk~~iiVDDiIdTgGTi~~Aa~~Lk~~GAk~V~a~ 248 (314)
T COG0462 213 EGKDVVIVDDIIDTGGTIAKAAKALKERGAKKVYAA 248 (314)
T ss_pred CCCEEEEEeccccccHHHHHHHHHHHHCCCCeEEEE
Confidence 5788888876 88999999999999999988754
No 203
>COG1040 ComFC Predicted amidophosphoribosyltransferases [General function prediction only]
Probab=22.79 E-value=1.5e+02 Score=25.26 Aligned_cols=31 Identities=26% Similarity=0.422 Sum_probs=27.3
Q ss_pred CcEEEEeC---CChhHHHHHHHHHHcCCCceEEc
Q 022496 248 KDTYVMCH---HGMRSLQVAQWLQTQGFRRVFNV 278 (296)
Q Consensus 248 ~~iv~~C~---~G~rs~~aa~~L~~~G~~~v~~l 278 (296)
++|++.+. +|.+...++..|++.|-.+|.++
T Consensus 185 ~~vlLvDDV~TTGaTl~~~~~~L~~~Ga~~v~~~ 218 (225)
T COG1040 185 KNVLLVDDVYTTGATLKEAAKLLREAGAKRVFVL 218 (225)
T ss_pred CeEEEEecccccHHHHHHHHHHHHHcCCceEEEE
Confidence 78888876 99999999999999998888765
No 204
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=22.75 E-value=92 Score=28.82 Aligned_cols=41 Identities=12% Similarity=0.096 Sum_probs=32.6
Q ss_pred CCCcEEEEeCCChhHHHHHHHHHHcCCCceEEccchHHHhhh
Q 022496 246 PQKDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGIHAYAT 287 (296)
Q Consensus 246 ~~~~iv~~C~~G~rs~~aa~~L~~~G~~~v~~l~GG~~~W~~ 287 (296)
++++|++. ..|+.+..++..|...|..++.++|+...++.+
T Consensus 134 ~~~~Vlvv-G~GG~Gs~ia~~La~~Gvg~i~lvD~d~v~~sN 174 (376)
T PRK08762 134 LEARVLLI-GAGGLGSPAALYLAAAGVGTLGIVDHDVVDRSN 174 (376)
T ss_pred hcCcEEEE-CCCHHHHHHHHHHHHcCCCeEEEEeCCEecchh
Confidence 45566555 778888999999999999999999998655543
No 205
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4.1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....
Probab=22.61 E-value=33 Score=30.07 Aligned_cols=68 Identities=19% Similarity=0.287 Sum_probs=43.9
Q ss_pred cEEEecCChHHHHhh-----CCCCceecccccccCCC---CCccCCCCCCCcEEEEeCCChhHHHHHHHHHHcCCCce
Q 022496 206 AQLIDVREPEEVALS-----SLPGFQVLPLRQFGSWG---PDITVKFDPQKDTYVMCHHGMRSLQVAQWLQTQGFRRV 275 (296)
Q Consensus 206 ~~llDvR~~~ey~~g-----hIpgA~~ip~~~l~~~~---~~~~~~~~~~~~iv~~C~~G~rs~~aa~~L~~~G~~~v 275 (296)
..++.|++..|.+.. .|=|-.|-.+.+|.-.. ..+.+.+|++ +++.+.+|..+..-+..|...||+.+
T Consensus 160 e~lVEVh~~~El~~al~~~a~iiGINnRdL~tf~vd~~~~~~l~~~ip~~--~~~iseSGI~~~~d~~~l~~~G~dav 235 (254)
T PF00218_consen 160 EALVEVHNEEELERALEAGADIIGINNRDLKTFEVDLNRTEELAPLIPKD--VIVISESGIKTPEDARRLARAGADAV 235 (254)
T ss_dssp EEEEEESSHHHHHHHHHTT-SEEEEESBCTTTCCBHTHHHHHHHCHSHTT--SEEEEESS-SSHHHHHHHCTTT-SEE
T ss_pred CeEEEECCHHHHHHHHHcCCCEEEEeCccccCcccChHHHHHHHhhCccc--eeEEeecCCCCHHHHHHHHHCCCCEE
Confidence 368999999887642 23344455555554321 1233345544 88888999999999999999999744
No 206
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=22.54 E-value=1.4e+02 Score=23.70 Aligned_cols=38 Identities=18% Similarity=0.305 Sum_probs=28.6
Q ss_pred CCCCcEEEEeC--CCh--hHHHHHHHHHHcCCCceEEccchH
Q 022496 245 DPQKDTYVMCH--HGM--RSLQVAQWLQTQGFRRVFNVSGGI 282 (296)
Q Consensus 245 ~~~~~iv~~C~--~G~--rs~~aa~~L~~~G~~~v~~l~GG~ 282 (296)
..+-.+|..|. .++ -.+.+...|++.|-..+.++-||.
T Consensus 61 ~~dv~vIgvSsl~g~h~~l~~~lve~lre~G~~~i~v~~GGv 102 (143)
T COG2185 61 EEDVDVIGVSSLDGGHLTLVPGLVEALREAGVEDILVVVGGV 102 (143)
T ss_pred hcCCCEEEEEeccchHHHHHHHHHHHHHHhCCcceEEeecCc
Confidence 45677888886 333 445778889999999998888885
No 207
>PRK06918 4-aminobutyrate aminotransferase; Reviewed
Probab=22.45 E-value=85 Score=29.78 Aligned_cols=38 Identities=13% Similarity=0.246 Sum_probs=29.6
Q ss_pred cEEEEeCCChhHHHHHHHHHHc--CCCceEEccchHHHhh
Q 022496 249 DTYVMCHHGMRSLQVAQWLQTQ--GFRRVFNVSGGIHAYA 286 (296)
Q Consensus 249 ~iv~~C~~G~rs~~aa~~L~~~--G~~~v~~l~GG~~~W~ 286 (296)
.-|++|++|.-|..+|..|... |=+.|..+.|||.+|.
T Consensus 116 ~~v~f~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t 155 (451)
T PRK06918 116 KKVLFLNSGAEAVENAVKIARKYTKRQGIISFSRGFHGRT 155 (451)
T ss_pred CEEEEcCCcHHHHHHHHHHHHHHhCCCcEEEECCCcCccc
Confidence 3689999999988888777663 5456778889888886
No 208
>PF00102 Y_phosphatase: Protein-tyrosine phosphatase; InterPro: IPR000242 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry repesents several receptor and non-receptor protein-tyrosine phosphatases. Structurally, all known receptor PTPases, are made up of a variable length extracellular domain, followed by a transmembrane region and a C-terminal catalytic cytoplasmic domain. Some of the receptor PTPases contain fibronectin type III (FN-III) repeats, immunoglobulin-like domains, MAM domains or carbonic anhydrase-like domains in their extracellular region. The cytoplasmic region generally contains two copies of the PTPase domain. The first seems to have enzymatic activity, while the second is inactive. The inactive domains of tandem phosphatases can be divided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre []. PTPase domains consist of about 300 amino acids. There are two conserved cysteines, the second one has been shown to be absolutely required for activity. Furthermore, a number of conserved residues in its immediate vicinity have also been shown to be important.; GO: 0004725 protein tyrosine phosphatase activity, 0006470 protein dephosphorylation; PDB: 3O4T_A 3O4S_A 3O4U_A 2A3K_A 2QDP_A 2QDC_A 2QDM_A 2HVL_A 1ZC0_A 3D44_A ....
Probab=22.41 E-value=97 Score=25.82 Aligned_cols=17 Identities=41% Similarity=0.567 Sum_probs=13.3
Q ss_pred CCCCcEEEEeCCC-hhHH
Q 022496 245 DPQKDTYVMCHHG-MRSL 261 (296)
Q Consensus 245 ~~~~~iv~~C~~G-~rs~ 261 (296)
..+.++||+|..| +||.
T Consensus 168 ~~~~pivVhc~~G~gRsg 185 (235)
T PF00102_consen 168 DPNGPIVVHCSDGVGRSG 185 (235)
T ss_dssp TTSSEEEEESSSSSHHHH
T ss_pred CCccceEeeccccccccc
Confidence 4678999999877 5665
No 209
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=22.40 E-value=94 Score=28.97 Aligned_cols=34 Identities=15% Similarity=0.413 Sum_probs=28.8
Q ss_pred EEEEeCCChhHHHHHHHHHHcCCCceEEccchHHH
Q 022496 250 TYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGIHA 284 (296)
Q Consensus 250 iv~~C~~G~rs~~aa~~L~~~G~~~v~~l~GG~~~ 284 (296)
-|++|.+-..+...+..|++.||. |..|.|-+..
T Consensus 333 siIFc~tk~ta~~l~~~m~~~Gh~-V~~l~G~l~~ 366 (477)
T KOG0332|consen 333 SIIFCHTKATAMWLYEEMRAEGHQ-VSLLHGDLTV 366 (477)
T ss_pred eEEEEeehhhHHHHHHHHHhcCce-eEEeeccchh
Confidence 467788888899999999999995 9999997654
No 210
>PRK00103 rRNA large subunit methyltransferase; Provisional
Probab=21.73 E-value=1e+02 Score=24.76 Aligned_cols=47 Identities=21% Similarity=0.210 Sum_probs=34.5
Q ss_pred CCCCCCCcEEEEeCCC--hhHHHHHHHHHHc---CCCceEEccchHHHhhhc
Q 022496 242 VKFDPQKDTYVMCHHG--MRSLQVAQWLQTQ---GFRRVFNVSGGIHAYATK 288 (296)
Q Consensus 242 ~~~~~~~~iv~~C~~G--~rs~~aa~~L~~~---G~~~v~~l~GG~~~W~~~ 288 (296)
..++++..+|+.|..| ..|...|..|... |..++..+-||-.++..+
T Consensus 62 ~~l~~~~~~i~LDe~Gk~~sS~~fA~~l~~~~~~g~~~i~F~IGGa~G~~~~ 113 (157)
T PRK00103 62 AALPKGARVIALDERGKQLSSEEFAQELERWRDDGRSDVAFVIGGADGLSPA 113 (157)
T ss_pred hhCCCCCEEEEEcCCCCcCCHHHHHHHHHHHHhcCCccEEEEEcCccccCHH
Confidence 3456677788888888 5788888888653 666888889987666544
No 211
>PRK06781 amidophosphoribosyltransferase; Provisional
Probab=21.47 E-value=1.4e+02 Score=28.82 Aligned_cols=36 Identities=17% Similarity=0.168 Sum_probs=30.7
Q ss_pred CCCCcEEEEeC---CChhHHHHHHHHHHcCCCceEEccc
Q 022496 245 DPQKDTYVMCH---HGMRSLQVAQWLQTQGFRRVFNVSG 280 (296)
Q Consensus 245 ~~~~~iv~~C~---~G~rs~~aa~~L~~~G~~~v~~l~G 280 (296)
-++++|++.+. +|.++..++..|+++|-+.|.+.-+
T Consensus 346 i~gk~VlLVDDvittGtTl~~~~~~Lk~aGA~eV~v~i~ 384 (471)
T PRK06781 346 VEGKRVVMIDDSIVRGTTSKRIVRMLREAGATEVHVRIA 384 (471)
T ss_pred cCCceEEEEeceeccchHHHHHHHHHHHcCCcEEEEEEC
Confidence 35789999976 8999999999999999988877654
No 212
>PLN02460 indole-3-glycerol-phosphate synthase
Probab=21.44 E-value=98 Score=28.32 Aligned_cols=68 Identities=21% Similarity=0.289 Sum_probs=44.9
Q ss_pred EEEecCChHHHHhh------CCCCceecccccccCCCC---CccC-----CCCCCCcEEEEeCCChhHHHHHHHHHHcCC
Q 022496 207 QLIDVREPEEVALS------SLPGFQVLPLRQFGSWGP---DITV-----KFDPQKDTYVMCHHGMRSLQVAQWLQTQGF 272 (296)
Q Consensus 207 ~llDvR~~~ey~~g------hIpgA~~ip~~~l~~~~~---~~~~-----~~~~~~~iv~~C~~G~rs~~aa~~L~~~G~ 272 (296)
.+|.|++..|.+.. .|=|-.|-.+.+|..... .+.+ .++ .+.+++.+.+|..+..-...|+..|+
T Consensus 233 ~LVEVH~~~ElerAl~~~ga~iIGINNRdL~Tf~vDl~~t~~L~~~~~~~~i~-~~~~~~VsESGI~t~~Dv~~l~~~Ga 311 (338)
T PLN02460 233 ALIEVHDEREMDRVLGIEGVELIGINNRSLETFEVDISNTKKLLEGERGEQIR-EKGIIVVGESGLFTPDDVAYVQNAGV 311 (338)
T ss_pred EEEEeCCHHHHHHHHhcCCCCEEEEeCCCCCcceECHHHHHHHhhhccccccC-CCCeEEEECCCCCCHHHHHHHHHCCC
Confidence 68999999888532 233444555555543221 1222 232 24688899999999999999999999
Q ss_pred Cce
Q 022496 273 RRV 275 (296)
Q Consensus 273 ~~v 275 (296)
+-|
T Consensus 312 dAv 314 (338)
T PLN02460 312 KAV 314 (338)
T ss_pred CEE
Confidence 644
No 213
>PRK05769 4-aminobutyrate aminotransferase; Provisional
Probab=20.85 E-value=96 Score=29.41 Aligned_cols=38 Identities=16% Similarity=0.232 Sum_probs=29.5
Q ss_pred cEEEEeCCChhHHHHHHHHHHc--CCCceEEccchHHHhh
Q 022496 249 DTYVMCHHGMRSLQVAQWLQTQ--GFRRVFNVSGGIHAYA 286 (296)
Q Consensus 249 ~iv~~C~~G~rs~~aa~~L~~~--G~~~v~~l~GG~~~W~ 286 (296)
.-|++|++|.-|..+|..|... |=+.|..+.|||.+|.
T Consensus 116 ~~v~f~~SGsEA~e~AlklAr~~tgr~~Ii~~~~~yHG~t 155 (441)
T PRK05769 116 KKVFFTNSGTESNEAAIKIARYHTGRKYIIAFLGAFHGRT 155 (441)
T ss_pred CEEEECCchHHHHHHHHHHHHHHhCCCeEEEECCCcCCcc
Confidence 4689999999888877777653 5456778889988886
No 214
>PRK01269 tRNA s(4)U8 sulfurtransferase; Provisional
Probab=20.65 E-value=1.4e+02 Score=28.84 Aligned_cols=38 Identities=26% Similarity=0.211 Sum_probs=29.6
Q ss_pred CCCcEEEEeCCChhHHHHHHHHHHcCCCceE--EccchHHH
Q 022496 246 PQKDTYVMCHHGMRSLQVAQWLQTQGFRRVF--NVSGGIHA 284 (296)
Q Consensus 246 ~~~~iv~~C~~G~rs~~aa~~L~~~G~~~v~--~l~GG~~~ 284 (296)
.+.++++.+.+|..|..++++|...|+. |. .++-|...
T Consensus 176 ~~gk~lvllSGGiDS~va~~~~~krG~~-v~~l~f~~g~~~ 215 (482)
T PRK01269 176 TQEDVLSLISGGFDSGVASYMLMRRGSR-VHYCFFNLGGAA 215 (482)
T ss_pred ccCeEEEEEcCCchHHHHHHHHHHcCCE-EEEEEEecCCch
Confidence 4678999999999999999999999994 54 33444443
No 215
>PRK08117 4-aminobutyrate aminotransferase; Provisional
Probab=20.56 E-value=1.2e+02 Score=28.60 Aligned_cols=40 Identities=15% Similarity=0.256 Sum_probs=30.6
Q ss_pred CCcEEEEeCCChhHHHHHHHHHHc--CCCceEEccchHHHhh
Q 022496 247 QKDTYVMCHHGMRSLQVAQWLQTQ--GFRRVFNVSGGIHAYA 286 (296)
Q Consensus 247 ~~~iv~~C~~G~rs~~aa~~L~~~--G~~~v~~l~GG~~~W~ 286 (296)
...-|++|++|..|-.+|..|... |=+.|..++||+.+|.
T Consensus 102 ~~~~v~f~~SGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t 143 (433)
T PRK08117 102 GLDCFFFSNSGAEAIEGALKLAKHVTKRPYIISFTGCFHGRT 143 (433)
T ss_pred CCCEEEEeCcHHHHHHHHHHHHHHhcCCCeEEEECCCcCCcC
Confidence 344688899999988887777553 5556888899988876
No 216
>PRK05074 inosine/xanthosine triphosphatase; Reviewed
Probab=20.23 E-value=1.5e+02 Score=24.34 Aligned_cols=42 Identities=21% Similarity=0.287 Sum_probs=34.4
Q ss_pred HHHHHHHHhcCCccHHHHHHhhCCC-CcccCCcccccccCCCCc
Q 022496 105 LSELQRRVSQGREDLSDLAVEHSIC-PSKGEGGMLGWVRKGQLV 147 (296)
Q Consensus 105 a~~i~~~l~~~g~~F~~la~~~S~d-~~~~~gG~lg~~~~~~l~ 147 (296)
-..+.++|+ .|.-+.++..++... ..+.++|.+|.++.+.+.
T Consensus 108 P~~v~~~i~-~G~ELg~vmd~~~g~~~i~~~~GaIG~LT~g~vt 150 (173)
T PRK05074 108 PAVVLEALR-QGEELGDVMDRLFGTDNIKQKGGAIGLLTAGKLT 150 (173)
T ss_pred CHHHHHHHH-cCCCHHHHHHHHhCCCCcCCCCceEEEecCCcee
Confidence 356777885 889999999987665 488899999999998764
Done!