Query 022498
Match_columns 296
No_of_seqs 169 out of 352
Neff 5.6
Searched_HMMs 46136
Date Fri Mar 29 04:00:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022498.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022498hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF14299 PP2: Phloem protein 2 100.0 3.9E-60 8.5E-65 408.4 19.7 148 121-282 1-154 (154)
2 PF12937 F-box-like: F-box-lik 98.5 4.5E-08 9.8E-13 67.7 2.2 44 24-67 1-44 (47)
3 PF00646 F-box: F-box domain; 98.2 3E-07 6.6E-12 63.3 0.2 45 23-67 2-46 (48)
4 smart00256 FBOX A Receptor for 98.2 1.7E-06 3.7E-11 57.0 3.8 40 27-66 1-40 (41)
5 PF06881 Elongin_A: RNA polyme 93.8 0.05 1.1E-06 44.3 2.7 71 23-102 3-73 (109)
6 KOG3926 F-box proteins [Amino 82.1 1.3 2.7E-05 42.4 3.1 78 20-102 198-278 (332)
7 KOG2997 F-box protein FBX9 [Ge 79.1 1 2.2E-05 43.9 1.5 83 23-109 106-194 (366)
8 PLN03215 ascorbic acid mannose 78.4 2.1 4.5E-05 42.5 3.4 38 24-61 4-42 (373)
9 KOG0274 Cdc4 and related F-box 69.8 1.8 3.8E-05 44.9 0.6 53 20-72 104-156 (537)
10 PF02018 CBM_4_9: Carbohydrate 58.3 87 0.0019 24.4 10.8 64 176-261 60-125 (131)
11 KOG4114 Cytochrome c oxidase a 52.6 8.6 0.00019 29.4 1.4 33 21-57 35-69 (73)
12 KOG4408 Putative Mg2+ and Co2+ 51.3 3.5 7.7E-05 40.5 -1.0 51 20-70 4-54 (386)
13 PF13013 F-box-like_2: F-box-l 45.8 21 0.00045 29.5 2.8 46 20-68 18-63 (109)
14 KOG2120 SCF ubiquitin ligase, 41.4 37 0.0008 33.6 4.2 48 20-67 94-141 (419)
15 KOG2944 Glyoxalase [Carbohydra 27.1 97 0.0021 27.6 4.1 76 166-242 85-167 (170)
16 COG3807 Uncharacterized protei 26.3 61 0.0013 28.6 2.7 43 168-210 41-90 (171)
17 KOG3233 RNA polymerase III, su 22.9 19 0.00041 34.6 -1.1 43 118-168 137-183 (297)
18 KOG3437 Anaphase-promoting com 22.5 5.8E+02 0.013 23.1 8.7 36 211-246 87-125 (184)
No 1
>PF14299 PP2: Phloem protein 2
Probab=100.00 E-value=3.9e-60 Score=408.38 Aligned_cols=148 Identities=35% Similarity=0.696 Sum_probs=136.6
Q ss_pred CceEEEEecccceeccCCCCCceeeeeccccccccceEEeeeeEEEEeeEEeeec--CCCeeEEEEEEEeCCCCcccCce
Q 022498 121 GGLCVSISSKALAITGIDDRRYWTHISTEESRFQSVAYLQQIWWFEVDGEFEFQF--PVGTYSLFFRLQLGKPSKRLGRR 198 (296)
Q Consensus 121 GkkCymLsAR~L~ItWgdd~rYW~Wi~~peSRF~EVAeL~~VcWLEI~Gki~t~l--p~t~Y~ay~v~kl~~~~~~~~~~ 198 (296)
||||||||||+|+|+|||||+||+|+++|+|||.|||||++||||||+|+|++++ |+|+|+||||||+.
T Consensus 1 G~~cymlsaR~L~I~Wg~~~~yW~w~~~~~srf~evAeL~~V~WLeI~G~i~~~~Lsp~t~Y~vy~v~kl~--------- 71 (154)
T PF14299_consen 1 GKKCYMLSARALSITWGDDPRYWKWIPLPDSRFSEVAELLQVCWLEIRGKINTRMLSPGTTYAVYFVFKLK--------- 71 (154)
T ss_pred CCEEEEEEhhhCEEecCCCCcceeeccCCcccceeeeEEEEEEEEEEEEEEEceEcCCCCEEEEEEEEEec---------
Confidence 8999999999999999999999999999999999999999999999999999994 99999999999994
Q ss_pred eeeccccccccCCceEEEEEecCCce--eeEEeee--cCCCcEEEEEeeeEEecCCCCccEEEEEEEEeeCCCccccEEE
Q 022498 199 VCKFEHVHGWDIKPVRFLLTTSDGQH--AVSQCFL--ENPGHWVHYRVADFVVEDPSESTKIKFSLTQIDCTHTKGGLCV 274 (296)
Q Consensus 199 ~~~~~~~~Gw~~~pv~~~l~~~~g~~--~~~~~~L--~~~DgW~EielGEF~~~~~~~~~eV~fsl~E~~~~~wK~GLiV 274 (296)
++++||+..|++++++.++++. +.+.+.+ .+.|||||||+|||+++++ ++++|+|+|+|+++++||+||||
T Consensus 72 ----~~~~Gw~~~pv~~~v~~~~~~~~~~~~~~~~~~~r~dgW~Eie~GeF~~~~~-~~~ev~f~~~E~~~~~wK~GLiv 146 (154)
T PF14299_consen 72 ----DDAYGWDSPPVEFSVKVPDGEKYEQERKVCLPKERGDGWMEIELGEFFNEGG-DDGEVEFSMYEVDSGHWKGGLIV 146 (154)
T ss_pred ----CCCCCCCcCCEEEEEEeCCCccccceeeEEcCCCCCCCEEEEEcceEEecCC-CCcEEEEEEEEecCCcccCeEEE
Confidence 7899999999999999998875 3333333 3469999999999999875 78999999999999999999999
Q ss_pred EeEEEEec
Q 022498 275 DSVLICPS 282 (296)
Q Consensus 275 ~GIeIRPk 282 (296)
+|||||||
T Consensus 147 ~GieIRPK 154 (154)
T PF14299_consen 147 EGIEIRPK 154 (154)
T ss_pred EEEEEecC
Confidence 99999998
No 2
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=98.53 E-value=4.5e-08 Score=67.75 Aligned_cols=44 Identities=20% Similarity=0.522 Sum_probs=39.7
Q ss_pred CCCchhHHHHHHHhcCChHHHHHHHhhhHHhhcccCchhhhccC
Q 022498 24 LSDMPESCVALVLMHLDPPEICKLARLNRAFRGASSADFIWESK 67 (296)
Q Consensus 24 ~~~LPe~cia~ils~tsP~dacr~a~vs~~fr~Aa~sD~VW~~f 67 (296)
+.+||+|.+..|+++++|.|.++++.||+.|+.++.++.+|.++
T Consensus 1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~~~~~lW~~~ 44 (47)
T PF12937_consen 1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIANDNSLWRRL 44 (47)
T ss_dssp CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHHTCCCHHHHH
T ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHCChhhhhhh
Confidence 47899999999999999999999999999999999999999865
No 3
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=98.21 E-value=3e-07 Score=63.31 Aligned_cols=45 Identities=24% Similarity=0.556 Sum_probs=39.1
Q ss_pred CCCCchhHHHHHHHhcCChHHHHHHHhhhHHhhcccCchhhhccC
Q 022498 23 RLSDMPESCVALVLMHLDPPEICKLARLNRAFRGASSADFIWESK 67 (296)
Q Consensus 23 ~~~~LPe~cia~ils~tsP~dacr~a~vs~~fr~Aa~sD~VW~~f 67 (296)
.|.+||++++.+|++++++.|.++++.||+.|+.+++++..|.++
T Consensus 2 ~~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~~~~~~~~ 46 (48)
T PF00646_consen 2 PLSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDSPRLWKKI 46 (48)
T ss_dssp HHHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTHHHHHHH
T ss_pred CHHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcCCCccHHH
Confidence 367899999999999999999999999999999999999999764
No 4
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=98.20 E-value=1.7e-06 Score=56.98 Aligned_cols=40 Identities=20% Similarity=0.517 Sum_probs=38.5
Q ss_pred chhHHHHHHHhcCChHHHHHHHhhhHHhhcccCchhhhcc
Q 022498 27 MPESCVALVLMHLDPPEICKLARLNRAFRGASSADFIWES 66 (296)
Q Consensus 27 LPe~cia~ils~tsP~dacr~a~vs~~fr~Aa~sD~VW~~ 66 (296)
||++++..|+++++|.|.+++++||+.||.+.+.+.+|..
T Consensus 1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~~~~~~~ 40 (41)
T smart00256 1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDSHDFWFK 40 (41)
T ss_pred CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcChhhhhc
Confidence 7999999999999999999999999999999999999975
No 5
>PF06881 Elongin_A: RNA polymerase II transcription factor SIII (Elongin) subunit A; InterPro: IPR010684 This family represents a conserved region within RNA polymerase II transcription factor SIII (Elongin) subunit A. In mammals, the Elongin complex activates elongation by RNA polymerase II by suppressing transient pausing of the polymerase at many sites within transcription units. Elongin is a heterotrimer composed of A, B, and C subunits of 110, 18, and 15 kilodaltons, respectively. Subunit A has been shown to function as the transcriptionally active component of Elongin [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus, 0016021 integral to membrane
Probab=93.79 E-value=0.05 Score=44.33 Aligned_cols=71 Identities=15% Similarity=0.285 Sum_probs=57.5
Q ss_pred CCCCchhHHHHHHHhcCChHHHHHHHhhhHHhhcccCchhhhccCCCCChhhhhhhccCCCCcCCCCCCCcHHHHHHHhc
Q 022498 23 RLSDMPESCVALVLMHLDPPEICKLARLNRAFRGASSADFIWESKLPSNYQFIVDKVLGSSSKTNMVDYLSKKHLYARLC 102 (296)
Q Consensus 23 ~~~~LPe~cia~ils~tsP~dacr~a~vs~~fr~Aa~sD~VW~~fLP~~~~~i~~~~~~~~~~~~~~~~~SKKeLy~~Lc 102 (296)
.++++|-+.|.-||...+|....++-.-|+.+ +-++|.+|.+|+=.||+.-.....+ ..+-|-+++|.++.
T Consensus 3 dvG~~py~ll~piL~~~~~~QL~~iE~~np~l--~~~tdeLW~~~i~rdFp~~~~~~~~-------~~~~~Wr~~Y~~~~ 73 (109)
T PF06881_consen 3 DVGDVPYHLLRPILEKCSPEQLRRIEDNNPHL--IEDTDELWKKLIKRDFPEESKRQKP-------KEPESWRELYEKLK 73 (109)
T ss_pred ccCCCCHHHHHHHHccCCHHHHHHHHHhCCCc--chhhHHHHHHHHHhHCcChhhcccc-------cccchHHHHHHHHH
Confidence 47899999999999999999999999999866 5679999999999999752222111 23358899999986
No 6
>KOG3926 consensus F-box proteins [Amino acid transport and metabolism]
Probab=82.07 E-value=1.3 Score=42.44 Aligned_cols=78 Identities=22% Similarity=0.289 Sum_probs=56.9
Q ss_pred CCCCCCCchhHHHHHHHhcCC-hHHHHHHHhhhHHhhcccCchhhhccCCCCChh--hhhhhccCCCCcCCCCCCCcHHH
Q 022498 20 LRPRLSDMPESCVALVLMHLD-PPEICKLARLNRAFRGASSADFIWESKLPSNYQ--FIVDKVLGSSSKTNMVDYLSKKH 96 (296)
Q Consensus 20 ~~~~~~~LPe~cia~ils~ts-P~dacr~a~vs~~fr~Aa~sD~VW~~fLP~~~~--~i~~~~~~~~~~~~~~~~~SKKe 96 (296)
.+..|-|||++|+-.||-+++ -+|.--+|.|-+++.-..+-+-+|.+..--.|. +|-....- +. ....--|+
T Consensus 198 ~~ltl~dLP~e~vl~Il~rlsDh~dL~s~aqa~etl~~l~~e~~iWkkLcqfHF~erQi~~~l~l-~k----~~q~dWkq 272 (332)
T KOG3926|consen 198 AGLTLHDLPLECVLNILLRLSDHRDLESLAQAWETLAKLSEERRIWKKLCQFHFNERQIHTILIL-SK----KGQKDWKQ 272 (332)
T ss_pred CCCCcccchHHHHHHHHHHccCcchHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhh-cc----ccchhHHH
Confidence 577899999999999999887 899999999999999999999999977553332 23222110 00 11123578
Q ss_pred HHHHhc
Q 022498 97 LYARLC 102 (296)
Q Consensus 97 Ly~~Lc 102 (296)
+|+.|-
T Consensus 273 myf~L~ 278 (332)
T KOG3926|consen 273 MYFQLR 278 (332)
T ss_pred HHHHHH
Confidence 888875
No 7
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=79.13 E-value=1 Score=43.92 Aligned_cols=83 Identities=17% Similarity=0.261 Sum_probs=56.1
Q ss_pred CCCCchhHHHHHHHhcCCh-----HHHHHHHhhhHHhhcccCchhhhccCCCCChhhhhhhccCCCCcCCCCCCCcHHHH
Q 022498 23 RLSDMPESCVALVLMHLDP-----PEICKLARLNRAFRGASSADFIWESKLPSNYQFIVDKVLGSSSKTNMVDYLSKKHL 97 (296)
Q Consensus 23 ~~~~LPe~cia~ils~tsP-----~dacr~a~vs~~fr~Aa~sD~VW~~fLP~~~~~i~~~~~~~~~~~~~~~~~SKKeL 97 (296)
.|..||.|.+-.||...=| ++--++|+|++.|+-+|..|.+|..+.=.-|+.-+-...+ ...-+ .-..|-+++
T Consensus 106 ~~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~R~~~lwR~aC~KvW~~s~~~ln~-~~~~s-ky~~SWR~M 183 (366)
T KOG2997|consen 106 SISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKCARDPELWRLACLKVWQRSCIKLNP-KILQS-KYYTSWREM 183 (366)
T ss_pred hhhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHHHcChHHHHHHHHHHHHHhhhccch-hhhhh-HHHhHHHHH
Confidence 3688999999888765554 9999999999999999999999998876555432211110 00000 112467788
Q ss_pred HHHhcCC-CccCC
Q 022498 98 YARLCSP-SPFDG 109 (296)
Q Consensus 98 y~~Lc~p-vlld~ 109 (296)
|+. +| |.+|+
T Consensus 184 fl~--RpRvrFdG 194 (366)
T KOG2997|consen 184 FLE--RPRVRFDG 194 (366)
T ss_pred Hhh--Ccceeecc
Confidence 766 44 66664
No 8
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=78.42 E-value=2.1 Score=42.49 Aligned_cols=38 Identities=21% Similarity=0.367 Sum_probs=34.9
Q ss_pred CCCchhHHHHHHHhcC-ChHHHHHHHhhhHHhhcccCch
Q 022498 24 LSDMPESCVALVLMHL-DPPEICKLARLNRAFRGASSAD 61 (296)
Q Consensus 24 ~~~LPe~cia~ils~t-sP~dacr~a~vs~~fr~Aa~sD 61 (296)
-.+||+|.+..|..++ +..|.-|+++|+++.|+|+...
T Consensus 4 Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~~ 42 (373)
T PLN03215 4 WSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVSGV 42 (373)
T ss_pred hhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhcccc
Confidence 4689999999999999 7999999999999999998863
No 9
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=69.84 E-value=1.8 Score=44.86 Aligned_cols=53 Identities=19% Similarity=0.226 Sum_probs=46.6
Q ss_pred CCCCCCCchhHHHHHHHhcCChHHHHHHHhhhHHhhcccCchhhhccCCCCCh
Q 022498 20 LRPRLSDMPESCVALVLMHLDPPEICKLARLNRAFRGASSADFIWESKLPSNY 72 (296)
Q Consensus 20 ~~~~~~~LPe~cia~ils~tsP~dacr~a~vs~~fr~Aa~sD~VW~~fLP~~~ 72 (296)
-...|..||-+-.-.||++++|++.|.+++||+.|+.-++.|.+|.+......
T Consensus 104 ~~dfi~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~~~~~~~~~~~~~~~~ 156 (537)
T KOG0274|consen 104 QRDFLSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKLLDDDKVWWRMCRELI 156 (537)
T ss_pred ccchhhcccchhcccccccCCHHHhhhhhhhcchhhhhhhccchhhhhhhhhc
Confidence 34557889999999999999999999999999999999999999997665433
No 10
>PF02018 CBM_4_9: Carbohydrate binding domain; InterPro: IPR003305 The 1,4-beta-glucanase CenC from Cellulomonas fimi contains two cellulose-binding domains, CBD(N1) and CBD(N2), arranged in tandem at its N terminus. These homologous CBDs are distinct in their selectivity for binding amorphous and not crystalline cellulose []. Multidimensional heteronuclear nuclear magnetic resonance (NMR) spectroscopy was used to determine the tertiary structure of the 152 amino acid N-terminal cellulose-binding domain from C. fimi 1,4-beta-glucanase CenC (CBDN1) []. The tertiary structure of CBDN1 is strikingly similar to that of the bacterial 1,3-1,4-beta-glucanases, as well as other sugar-binding proteins with jelly-roll folds.; GO: 0016798 hydrolase activity, acting on glycosyl bonds; PDB: 3OEA_B 2ZEX_B 3OEB_A 2ZEY_A 2ZEW_A 1GUI_A 2W5F_A 2WZE_A 2WYS_A 2ZEZ_B ....
Probab=58.31 E-value=87 Score=24.39 Aligned_cols=64 Identities=19% Similarity=0.343 Sum_probs=40.9
Q ss_pred CCCeeEEEEEEEeCCCCcccCceeeeccccccccCCceEEEEEecCC-ceeeEEe-eecCCCcEEEEEeeeEEecCCCCc
Q 022498 176 PVGTYSLFFRLQLGKPSKRLGRRVCKFEHVHGWDIKPVRFLLTTSDG-QHAVSQC-FLENPGHWVHYRVADFVVEDPSES 253 (296)
Q Consensus 176 p~t~Y~ay~v~kl~~~~~~~~~~~~~~~~~~Gw~~~pv~~~l~~~~g-~~~~~~~-~L~~~DgW~EielGEF~~~~~~~~ 253 (296)
|+.+|.+.|-++.. .. .++.+.+...++ .+..-.. .....+.|-++++ +|.... +.
T Consensus 60 ~G~~Y~~s~~vk~~--------------~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~s~-~ft~~~--~~ 117 (131)
T PF02018_consen 60 PGKTYTVSFWVKAD--------------SG-----GTVSVSLRDEDGSPYNWYTGQTVTITGEWTKYSG-TFTAPS--DD 117 (131)
T ss_dssp TTSEEEEEEEEEES--------------SS-----EEEEEEEEESSTTTEEEEEEEEEEETSSEEEEEE-EEEEES--SC
T ss_pred CCCEEEEEEEEEeC--------------CC-----CEEEEEEEEcCCCCcEEEEEEEEECCCCcEEEEE-EEEECC--CC
Confidence 89999999999863 11 367777766666 3221111 2233589999995 898874 34
Q ss_pred cEEEEEEE
Q 022498 254 TKIKFSLT 261 (296)
Q Consensus 254 ~eV~fsl~ 261 (296)
..+.|.+.
T Consensus 118 ~~~~l~~~ 125 (131)
T PF02018_consen 118 DTVRLYFE 125 (131)
T ss_dssp EEEEEEEE
T ss_pred ceEEEEEE
Confidence 56666543
No 11
>KOG4114 consensus Cytochrome c oxidase assembly protein PET191 [Posttranslational modification, protein turnover, chaperones]
Probab=52.60 E-value=8.6 Score=29.45 Aligned_cols=33 Identities=45% Similarity=0.946 Sum_probs=23.1
Q ss_pred CCCCCCchhHHHHHHHhcCChHHHHHHHhhh--HHhhcc
Q 022498 21 RPRLSDMPESCVALVLMHLDPPEICKLARLN--RAFRGA 57 (296)
Q Consensus 21 ~~~~~~LPe~cia~ils~tsP~dacr~a~vs--~~fr~A 57 (296)
..++.+|||+|++.+=.|+. |.=+.|- +-||.+
T Consensus 35 n~~~~~vPeeC~al~~af~d----CKRslvDmrkRfrgr 69 (73)
T KOG4114|consen 35 NPELKDVPEECIALMKAFLD----CKRSLVDMRKRFRGR 69 (73)
T ss_pred CCccccCcHHHHHHHHHHHH----HHHHHHHHHHHHccc
Confidence 44568899999999998875 4444443 336654
No 12
>KOG4408 consensus Putative Mg2+ and Co2+ transporter CorD [Inorganic ion transport and metabolism]
Probab=51.28 E-value=3.5 Score=40.49 Aligned_cols=51 Identities=22% Similarity=0.242 Sum_probs=46.4
Q ss_pred CCCCCCCchhHHHHHHHhcCChHHHHHHHhhhHHhhcccCchhhhccCCCC
Q 022498 20 LRPRLSDMPESCVALVLMHLDPPEICKLARLNRAFRGASSADFIWESKLPS 70 (296)
Q Consensus 20 ~~~~~~~LPe~cia~ils~tsP~dacr~a~vs~~fr~Aa~sD~VW~~fLP~ 70 (296)
...++++||.+-+-.++++..++++.+.|.||+-+...+.-+..|+++.-.
T Consensus 4 ~~~~le~~~~~~l~~vls~~~~~~~~~~a~vs~rLk~~~s~~~lw~r~c~k 54 (386)
T KOG4408|consen 4 LPLGLEWLPRDPLHLVLSFLLYRDLINCAYVSRRLKELGSHLPLWNRPCKK 54 (386)
T ss_pred cccchhhcccccceeeecccchhhhhcceeechHHhhhhhccccccccccc
Confidence 356788999999999999999999999999999999999999999998743
No 13
>PF13013 F-box-like_2: F-box-like domain
Probab=45.79 E-value=21 Score=29.47 Aligned_cols=46 Identities=28% Similarity=0.410 Sum_probs=39.4
Q ss_pred CCCCCCCchhHHHHHHHhcCChHHHHHHHhhhHHhhcccCchhhhccCC
Q 022498 20 LRPRLSDMPESCVALVLMHLDPPEICKLARLNRAFRGASSADFIWESKL 68 (296)
Q Consensus 20 ~~~~~~~LPe~cia~ils~tsP~dacr~a~vs~~fr~Aa~sD~VW~~fL 68 (296)
....+.|||+|....|..+-++.+...+....+++|.+.+ ..|. +|
T Consensus 18 ~~ltl~DLP~ELl~~I~~~C~~~~l~~l~~~~~~~r~~r~--~~~~-~L 63 (109)
T PF13013_consen 18 QSLTLLDLPWELLQLIFDYCNDPILLALSRTCRAYRSWRD--HIWY-LL 63 (109)
T ss_pred cccchhhChHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHH--HHHH-Hh
Confidence 4557899999999999999999999999999999998744 4665 45
No 14
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=41.45 E-value=37 Score=33.56 Aligned_cols=48 Identities=15% Similarity=0.290 Sum_probs=43.9
Q ss_pred CCCCCCCchhHHHHHHHhcCChHHHHHHHhhhHHhhcccCchhhhccC
Q 022498 20 LRPRLSDMPESCVALVLMHLDPPEICKLARLNRAFRGASSADFIWESK 67 (296)
Q Consensus 20 ~~~~~~~LPe~cia~ils~tsP~dacr~a~vs~~fr~Aa~sD~VW~~f 67 (296)
.+..++.||+|-+-.|+|.+--.|.-++|.|++-|...|.-...|...
T Consensus 94 pgv~~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~lW~~l 141 (419)
T KOG2120|consen 94 PGVSWDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDESLWQTL 141 (419)
T ss_pred CCCCcccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhccccccceeee
Confidence 455689999999999999999999999999999999999999999754
No 15
>KOG2944 consensus Glyoxalase [Carbohydrate transport and metabolism]
Probab=27.07 E-value=97 Score=27.58 Aligned_cols=76 Identities=22% Similarity=0.287 Sum_probs=45.2
Q ss_pred EEeeEEeeecCCCeeEEE-EEEEeCCCCcccCceeeec-cc----cccccCCceEEEEEecCCceeeEEeee-cCCCcEE
Q 022498 166 EVDGEFEFQFPVGTYSLF-FRLQLGKPSKRLGRRVCKF-EH----VHGWDIKPVRFLLTTSDGQHAVSQCFL-ENPGHWV 238 (296)
Q Consensus 166 EI~Gki~t~lp~t~Y~ay-~v~kl~~~~~~~~~~~~~~-~~----~~Gw~~~pv~~~l~~~~g~~~~~~~~L-~~~DgW~ 238 (296)
-+.+++++..|-++|+.- -.|+-++..-+...++|-. ++ ...++.+=|+|+=+.+||.... ...+ +..++|+
T Consensus 85 ~~~~~~ELthn~Gtes~~~~~~~ngN~~prGfgHIci~V~di~sac~~lkekGV~f~Kk~~dGk~K~-iaF~~dpDgywi 163 (170)
T KOG2944|consen 85 SRNAKLELTHNWGTESPPDQAYLNGNKEPRGFGHICIEVDDINSACERLKEKGVRFKKKLKDGKMKP-IAFLHDPDGYWI 163 (170)
T ss_pred cccCceeeecCCCCCCCcchhhcCCCCCCCccceEEEEeCCHHHHHHHHHHhCceeeecCCCccccc-eeEEECCCCCeE
Confidence 356777776677777655 3333222111344577774 22 3344556688887888998733 3444 4457899
Q ss_pred EEEe
Q 022498 239 HYRV 242 (296)
Q Consensus 239 Eiel 242 (296)
||+.
T Consensus 164 ei~~ 167 (170)
T KOG2944|consen 164 EIEL 167 (170)
T ss_pred EEee
Confidence 9975
No 16
>COG3807 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.25 E-value=61 Score=28.62 Aligned_cols=43 Identities=16% Similarity=0.251 Sum_probs=30.2
Q ss_pred eeEEeeec-CCCeeEEEEEEEeCCCCccc------CceeeeccccccccC
Q 022498 168 DGEFEFQF-PVGTYSLFFRLQLGKPSKRL------GRRVCKFEHVHGWDI 210 (296)
Q Consensus 168 ~Gki~t~l-p~t~Y~ay~v~kl~~~~~~~------~~~~~~~~~~~Gw~~ 210 (296)
.++.|.+. |.+.|++-++|.-+-...+. =|++|-.+...||-.
T Consensus 41 s~~VN~R~GP~~~yav~W~y~k~GlPVEIvqEy~~WRrirDadG~egWv~ 90 (171)
T COG3807 41 SAEVNARVGPGTDYAVEWVYLKKGLPVEIVQEYDNWRRIRDADGTEGWVH 90 (171)
T ss_pred ccceecccCCCccceeEEeeeccCCceehhhhhhhhhheeCCCCCceeee
Confidence 67888888 99999999999643222211 257777777888854
No 17
>KOG3233 consensus RNA polymerase III, subunit C34 [Transcription]
Probab=22.91 E-value=19 Score=34.55 Aligned_cols=43 Identities=19% Similarity=0.158 Sum_probs=29.7
Q ss_pred cCCCceEEEEecc--cceeccCCCCCceeeeecc--ccccccceEEeeeeEEEEe
Q 022498 118 KNTGGLCVSISSK--ALAITGIDDRRYWTHISTE--ESRFQSVAYLQQIWWFEVD 168 (296)
Q Consensus 118 k~sGkkCymLsAR--~L~ItWgdd~rYW~Wi~~p--eSRF~EVAeL~~VcWLEI~ 168 (296)
+.+++|||||..= ..+||.|- |.+-. |+-|.| -|+++||.=+.
T Consensus 137 ~n~~~KvYmLy~leP~~elTGG~------WytDqdlDvEfIe--~L~~~c~~fl~ 183 (297)
T KOG3233|consen 137 KNSRKKVYMLYDLEPDSELTGGT------WYTDQDLDVEFIE--VLKQICVRFLE 183 (297)
T ss_pred cCCCceEEEEecccccccccCCc------ccccccccHHHHH--HHHHHHHHHHH
Confidence 5688999999853 67888773 66544 455654 48888884433
No 18
>KOG3437 consensus Anaphase-promoting complex (APC), subunit 10 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=22.52 E-value=5.8e+02 Score=23.07 Aligned_cols=36 Identities=25% Similarity=0.467 Sum_probs=26.5
Q ss_pred CceEEEEEecCCcee---eEEeeecCCCcEEEEEeeeEE
Q 022498 211 KPVRFLLTTSDGQHA---VSQCFLENPGHWVHYRVADFV 246 (296)
Q Consensus 211 ~pv~~~l~~~~g~~~---~~~~~L~~~DgW~EielGEF~ 246 (296)
.|.++++...+|-.. .+.+.+.++.||+.+.+..++
T Consensus 87 tPs~i~I~~G~g~~dl~~~~~~el~ep~GWv~lp~~d~~ 125 (184)
T KOG3437|consen 87 TPSKIKIRAGNGFNDLWEIQSVELVEPKGWVHLPVLDND 125 (184)
T ss_pred CceeEEEEecCChhheeeeeEEEEecCCceEEEeeccCC
Confidence 588888877777532 234567789999999999873
Done!