Query 022498
Match_columns 296
No_of_seqs 169 out of 352
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 06:28:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022498.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022498hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1fs1_A SKP2 F-BOX, cyclin A/CD 98.7 1.5E-08 5E-13 70.7 3.6 47 21-67 6-52 (53)
2 3l2o_B F-box only protein 4; s 98.2 3.4E-07 1.2E-11 86.1 2.2 81 22-102 3-93 (312)
3 2e31_A FBS1, F-box only protei 97.6 2.2E-05 7.4E-10 73.6 3.2 81 21-109 48-130 (297)
4 2ovr_B FBW7, F-BOX/WD repeat p 97.5 3.2E-05 1.1E-09 72.0 2.4 48 21-68 16-63 (445)
5 3v7d_B Cell division control p 97.1 9.2E-05 3.2E-09 68.8 1.1 45 24-68 15-60 (464)
6 1p22_A F-BOX/WD-repeat protein 97.1 7.7E-05 2.6E-09 69.5 0.0 48 24-71 11-62 (435)
7 2ast_B S-phase kinase-associat 96.5 0.0012 4.1E-08 59.4 2.7 48 20-67 5-52 (336)
8 2p1m_B Transport inhibitor res 93.3 0.038 1.3E-06 53.3 2.9 35 23-57 5-40 (594)
9 3ogk_B Coronatine-insensitive 90.1 0.12 4.1E-06 49.9 2.3 34 24-57 13-47 (592)
10 4hfx_A Transcription elongatio 66.3 2.4 8.2E-05 33.2 1.7 63 27-102 13-75 (97)
11 1dyo_A Endo-1,4-beta-xylanase 50.5 1E+02 0.0034 25.0 11.8 89 174-283 64-157 (160)
12 2lde_A Sarafotoxin-I3; endothe 30.0 15 0.00052 22.0 0.6 11 131-141 16-26 (26)
13 2w5f_A Endo-1,4-beta-xylanase 21.7 4.8E+02 0.017 25.3 10.2 44 233-283 127-170 (540)
No 1
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E
Probab=98.65 E-value=1.5e-08 Score=70.66 Aligned_cols=47 Identities=15% Similarity=0.331 Sum_probs=40.5
Q ss_pred CCCCCCchhHHHHHHHhcCChHHHHHHHhhhHHhhcccCchhhhccC
Q 022498 21 RPRLSDMPESCVALVLMHLDPPEICKLARLNRAFRGASSADFIWESK 67 (296)
Q Consensus 21 ~~~~~~LPe~cia~ils~tsP~dacr~a~vs~~fr~Aa~sD~VW~~f 67 (296)
...+.+||++++..|+++++|.|.+++++||+.|+.++.++.+|.++
T Consensus 6 ~~~~~~LP~eil~~I~~~L~~~dl~~~~~Vck~w~~~~~~~~lW~~l 52 (53)
T 1fs1_A 6 GVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTL 52 (53)
T ss_dssp ---CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHTCGGGC---
T ss_pred CCCHHHCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHhc
Confidence 56789999999999999999999999999999999999999999864
No 2
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=98.21 E-value=3.4e-07 Score=86.11 Aligned_cols=81 Identities=17% Similarity=0.333 Sum_probs=61.2
Q ss_pred CCCCCchhHHHHHHHhcCChHHHHHHHhhhHHhhcccCchhhhccCCCCChh---hhhhhccCCC-----C--cCCCCCC
Q 022498 22 PRLSDMPESCVALVLMHLDPPEICKLARLNRAFRGASSADFIWESKLPSNYQ---FIVDKVLGSS-----S--KTNMVDY 91 (296)
Q Consensus 22 ~~~~~LPe~cia~ils~tsP~dacr~a~vs~~fr~Aa~sD~VW~~fLP~~~~---~i~~~~~~~~-----~--~~~~~~~ 91 (296)
..|++||.+++-+|+||++|.|+||+|+||+.+|..|+.+.+|..|+-.|++ +|...+.+.- + ......+
T Consensus 3 ~~l~~LP~ei~l~IlsfL~p~DL~~l~~vcr~Wr~la~D~~LWr~~l~rd~~~W~si~~~s~p~~~~~~~~~~~~~~~~~ 82 (312)
T 3l2o_B 3 STLTRLPIDVQLYILSFLSPHDLCQLGSTNHYWNETVRDPILWRYFLLRDLPSWSSVDWKSLPDLEILKKPISEVTDGAF 82 (312)
T ss_dssp CHHHHSCHHHHHHHHHTSCHHHHHHHHTTCHHHHHHHTCHHHHHHHHHSSGGGCCCCCGGGCCSCHHHHSSCSCC----C
T ss_pred chhHhCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhccchHHHHHHhccCCCCCccccccCcchhhccCcccccccccc
Confidence 3578999999999999999999999999999999999999999999987754 4444333200 0 0000124
Q ss_pred CcHHHHHHHhc
Q 022498 92 LSKKHLYARLC 102 (296)
Q Consensus 92 ~SKKeLy~~Lc 102 (296)
...+.+|.+=|
T Consensus 83 ~~~~~~y~~~~ 93 (312)
T 3l2o_B 83 FDYMAVYRMCC 93 (312)
T ss_dssp CCHHHHHHHHC
T ss_pred ccHHHHHHhcC
Confidence 56899999966
No 3
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A
Probab=97.63 E-value=2.2e-05 Score=73.57 Aligned_cols=81 Identities=14% Similarity=0.128 Sum_probs=61.2
Q ss_pred CCCCCCchhHHHHHHHhcCChHHHH-HHHhhhHHhhcccCchhhhccCCCCChhhhhhhccCCCCcCCCCCCCcHHHHHH
Q 022498 21 RPRLSDMPESCVALVLMHLDPPEIC-KLARLNRAFRGASSADFIWESKLPSNYQFIVDKVLGSSSKTNMVDYLSKKHLYA 99 (296)
Q Consensus 21 ~~~~~~LPe~cia~ils~tsP~dac-r~a~vs~~fr~Aa~sD~VW~~fLP~~~~~i~~~~~~~~~~~~~~~~~SKKeLy~ 99 (296)
...+..||++.+..||+++.|+|.+ |+++|++.+|..++++.+|.+.+... .+...... . +...+-|.+|+
T Consensus 48 ~~~~~~LP~ell~~Il~~Lp~~~L~~r~~~VCk~Wr~l~~~~~~w~~~~~~~--g~~~~~~~--~----~~~~~Wk~~y~ 119 (297)
T 2e31_A 48 VEYLAELPEPLLLRVLAELPATELVQACRLVCLRWKELVDGAPLWLLKCQQE--GLVPEGSA--D----EERDHWQQFYF 119 (297)
T ss_dssp CCCTTSSCHHHHHHHHHTSCHHHHHHTGGGTCHHHHHHHTSHHHHHHHHHHT--TCCCC-----------CCSCHHHHHH
T ss_pred ccChhhCCHHHHHHHHHcCCHHHHHHHHHHHhHHHHHHhcChHHHHHHhhcc--Cccccccc--C----CCCCChhhhhe
Confidence 4678999999999999999999999 99999999999999999999987654 11111100 0 23456899998
Q ss_pred Hhc-CCCccCC
Q 022498 100 RLC-SPSPFDG 109 (296)
Q Consensus 100 ~Lc-~pvlld~ 109 (296)
.-- .-+||.+
T Consensus 120 ~~~~gRNLL~N 130 (297)
T 2e31_A 120 LSKRRRNLLRN 130 (297)
T ss_dssp HHHHCCCCSSC
T ss_pred heecccceeec
Confidence 743 3466655
No 4
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=97.50 E-value=3.2e-05 Score=72.04 Aligned_cols=48 Identities=25% Similarity=0.454 Sum_probs=44.7
Q ss_pred CCCCCCchhHHHHHHHhcCChHHHHHHHhhhHHhhcccCchhhhccCC
Q 022498 21 RPRLSDMPESCVALVLMHLDPPEICKLARLNRAFRGASSADFIWESKL 68 (296)
Q Consensus 21 ~~~~~~LPe~cia~ils~tsP~dacr~a~vs~~fr~Aa~sD~VW~~fL 68 (296)
.--|..||++++..|++|++|.|.|++++||+.|+..++.+.+|.+++
T Consensus 16 ~d~~~~lp~e~~~~i~~~l~~~~l~~~~~v~~~~~~~~~~~~~w~~~~ 63 (445)
T 2ovr_B 16 RDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKC 63 (445)
T ss_dssp CSTTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHHHTCSHHHHHHH
T ss_pred CChhHHCCHHHHHHHHHhCCHHHHHHHHHHhHHHHhhcCchhHhhhhe
Confidence 445789999999999999999999999999999999999999999765
No 5
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=97.15 E-value=9.2e-05 Score=68.81 Aligned_cols=45 Identities=11% Similarity=0.227 Sum_probs=42.3
Q ss_pred CCCchhHHHHHHHhcCChHHHHHHHhhhHHhhcccCc-hhhhccCC
Q 022498 24 LSDMPESCVALVLMHLDPPEICKLARLNRAFRGASSA-DFIWESKL 68 (296)
Q Consensus 24 ~~~LPe~cia~ils~tsP~dacr~a~vs~~fr~Aa~s-D~VW~~fL 68 (296)
|..||+|.+..|+++++|.|.|++++||+.++..+++ +.+|.+++
T Consensus 15 ~~~lp~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~~~w~~~~ 60 (464)
T 3v7d_B 15 ITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSLWKKLL 60 (464)
T ss_dssp HHHSCHHHHHHHHTTSCHHHHHHHHTTCHHHHHHHTTCHHHHHHHH
T ss_pred hHHCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 6789999999999999999999999999999998887 89999875
No 6
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=97.09 E-value=7.7e-05 Score=69.49 Aligned_cols=48 Identities=15% Similarity=0.401 Sum_probs=44.0
Q ss_pred CCCchhH----HHHHHHhcCChHHHHHHHhhhHHhhcccCchhhhccCCCCC
Q 022498 24 LSDMPES----CVALVLMHLDPPEICKLARLNRAFRGASSADFIWESKLPSN 71 (296)
Q Consensus 24 ~~~LPe~----cia~ils~tsP~dacr~a~vs~~fr~Aa~sD~VW~~fLP~~ 71 (296)
|..||++ .+..|+++++|.|.|++++||+.|+..++.+.+|.+++-..
T Consensus 11 ~~~lp~e~~~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~~w~~~~~~~ 62 (435)
T 1p22_A 11 ITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGMLWKKLIERM 62 (435)
T ss_dssp HHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcChHHHHHHHHhh
Confidence 5779999 99999999999999999999999999999999999876543
No 7
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=96.45 E-value=0.0012 Score=59.43 Aligned_cols=48 Identities=15% Similarity=0.308 Sum_probs=41.3
Q ss_pred CCCCCCCchhHHHHHHHhcCChHHHHHHHhhhHHhhcccCchhhhccC
Q 022498 20 LRPRLSDMPESCVALVLMHLDPPEICKLARLNRAFRGASSADFIWESK 67 (296)
Q Consensus 20 ~~~~~~~LPe~cia~ils~tsP~dacr~a~vs~~fr~Aa~sD~VW~~f 67 (296)
....+++||++++..|+++++++|.++++.|++.++.++.....|.++
T Consensus 5 ~~~~~~~LP~eil~~If~~L~~~d~~~~~~vc~~W~~~~~~~~~~~~l 52 (336)
T 2ast_B 5 PGVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTL 52 (336)
T ss_dssp --CCSSSSCHHHHHHHHTTSCHHHHHHTTSSCHHHHHHHTCSTTSSEE
T ss_pred ccCChhhCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCchhheee
Confidence 356789999999999999999999999999999999998666667643
No 8
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=93.29 E-value=0.038 Score=53.30 Aligned_cols=35 Identities=9% Similarity=0.167 Sum_probs=29.4
Q ss_pred CCCCchhHHHHHHHhcCC-hHHHHHHHhhhHHhhcc
Q 022498 23 RLSDMPESCVALVLMHLD-PPEICKLARLNRAFRGA 57 (296)
Q Consensus 23 ~~~~LPe~cia~ils~ts-P~dacr~a~vs~~fr~A 57 (296)
.+++||++++..|++|++ ++|++++|.||+.++.+
T Consensus 5 ~~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~ 40 (594)
T 2p1m_B 5 IALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEI 40 (594)
T ss_dssp -----CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHH
T ss_pred chhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHh
Confidence 468999999999999999 99999999999999987
No 9
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=90.08 E-value=0.12 Score=49.86 Aligned_cols=34 Identities=12% Similarity=0.148 Sum_probs=31.7
Q ss_pred CCCchhHHHHHHHhcC-ChHHHHHHHhhhHHhhcc
Q 022498 24 LSDMPESCVALVLMHL-DPPEICKLARLNRAFRGA 57 (296)
Q Consensus 24 ~~~LPe~cia~ils~t-sP~dacr~a~vs~~fr~A 57 (296)
..+||++++.+|++|+ +++|+++++.||+.++.+
T Consensus 13 ~~~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~ 47 (592)
T 3ogk_B 13 CVATVDDVIEQVMTYITDPKDRDSASLVCRRWFKI 47 (592)
T ss_dssp CCCCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHH
T ss_pred cCCCCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHh
Confidence 3589999999999999 899999999999999887
No 10
>4hfx_A Transcription elongation factor B polypeptide 3; structural genomics, PSI-biology, northeast structural genom consortium, NESG; 2.54A {Homo sapiens}
Probab=66.26 E-value=2.4 Score=33.24 Aligned_cols=63 Identities=21% Similarity=0.410 Sum_probs=38.8
Q ss_pred chhHHHHHHHhcCChHHHHHHHhhhHHhhcccCchhhhccCCCCChhhhhhhccCCCCcCCCCCCCcHHHHHHHhc
Q 022498 27 MPESCVALVLMHLDPPEICKLARLNRAFRGASSADFIWESKLPSNYQFIVDKVLGSSSKTNMVDYLSKKHLYARLC 102 (296)
Q Consensus 27 LPe~cia~ils~tsP~dacr~a~vs~~fr~Aa~sD~VW~~fLP~~~~~i~~~~~~~~~~~~~~~~~SKKeLy~~Lc 102 (296)
.|-+.+.-||-.-||..-.++-.-|+.+ .-++|-+|.+++=.||..-- + ...-|-+|+|++|.
T Consensus 13 ~Py~lL~PVLek~tp~QL~~IE~~nP~L--~~dTdeLWk~~c~rdF~~~~-------p----~e~esWRelY~rl~ 75 (97)
T 4hfx_A 13 VPYSVLEPVLERCTPDQLYRIEEYNHVL--IEETDQLWKVHCHRDFKEER-------P----EEYESWREMYLRLQ 75 (97)
T ss_dssp -------CCGGGCCHHHHHHHHTC--------CCHHHHHHHC----CCSC-------C----CSSSCHHHHHHHHH
T ss_pred CcHHHHHHHHccCCHHHHHHHHHhCccc--chhhHHHHHHHHHhHCcccC-------C----CCCCCHHHHHHHHH
Confidence 4777888899999999999999999977 67899999999999987331 1 34468999999986
No 11
>1dyo_A Endo-1,4-beta-xylanase Y; carbohydrate-binding module, xylan-binding; 2.1A {Clostridium thermocellum} SCOP: b.18.1.7 PDB: 1h6y_A 1h6x_A
Probab=50.49 E-value=1e+02 Score=25.05 Aligned_cols=89 Identities=15% Similarity=0.240 Sum_probs=51.0
Q ss_pred ec-CCCeeEEEEEEEeCCCCcccCceeeeccccccccCCceEEEEE--ecCCc--eeeEEeeecCCCcEEEEEeeeEEec
Q 022498 174 QF-PVGTYSLFFRLQLGKPSKRLGRRVCKFEHVHGWDIKPVRFLLT--TSDGQ--HAVSQCFLENPGHWVHYRVADFVVE 248 (296)
Q Consensus 174 ~l-p~t~Y~ay~v~kl~~~~~~~~~~~~~~~~~~Gw~~~pv~~~l~--~~~g~--~~~~~~~L~~~DgW~EielGEF~~~ 248 (296)
.| |+++|.+...+++.. |=....+.+.+. ..+|. +..-..-.-..++|.+++-|.|...
T Consensus 64 ~l~~g~~Y~~Sa~V~~~~----------------g~~~~~v~~~l~~~~~~g~~~y~~i~~~~~~~~~W~~L~G~~ft~~ 127 (160)
T 1dyo_A 64 TFVPGNTYCFSVVASFIE----------------GASSTTFCMKLQYVDGSGTQRYDTIDMKTVGPNQWVHLYNPQYRIP 127 (160)
T ss_dssp TSCTTCEEEEEEEEECCS----------------SSSCEEEEEEEEEECTTSCEEEEEEEEEEECSSCCEEEEEEEEECC
T ss_pred hccCCCEEEEEEEEEECC----------------CCCceeEEEEEEEEcCCCCEEEEEEeeEEEcCCccEEEECcEEEeC
Confidence 35 999999999988631 101113333333 23454 2110000124689999998899986
Q ss_pred CCCCccEEEEEEEEeeCCCccccEEEEeEEEEecc
Q 022498 249 DPSESTKIKFSLTQIDCTHTKGGLCVDSVLICPSS 283 (296)
Q Consensus 249 ~~~~~~eV~fsl~E~~~~~wK~GLiV~GIeIRPk~ 283 (296)
.. ...+.|-+ |. ..-..=+.|+.|.|.|..
T Consensus 128 ~~--~~~~~lyv-e~--~~~~~d~yiDdv~i~~~g 157 (160)
T 1dyo_A 128 SD--ATDMYVYV-ET--ADDTINFYIDEAIGAVAG 157 (160)
T ss_dssp TT--CEEEEEEE-EE--SSCCCCEEEEEEEEEETT
T ss_pred CC--CCEEEEEE-EC--CCCCccEEEEEEEEEeCc
Confidence 53 23343322 33 233455899999999875
No 12
>2lde_A Sarafotoxin-I3; endothelin-like peptide; NMR {Synthetic}
Probab=30.04 E-value=15 Score=21.96 Aligned_cols=11 Identities=0% Similarity=0.012 Sum_probs=7.5
Q ss_pred cceeccCCCCC
Q 022498 131 ALAITGIDDRR 141 (296)
Q Consensus 131 ~L~ItWgdd~r 141 (296)
.|.|+|.++|+
T Consensus 16 hlDiIWvntp~ 26 (26)
T 2lde_A 16 HKDVIWVNRNX 26 (26)
T ss_dssp STTCSTTTCC-
T ss_pred cccEEEecCCC
Confidence 36788888774
No 13
>2w5f_A Endo-1,4-beta-xylanase Y; cellulosome, glycosidase, xylan degradation, hydrolase; HET: XYP; 1.90A {Clostridium thermocellum} PDB: 2wze_A* 2wys_A*
Probab=21.72 E-value=4.8e+02 Score=25.34 Aligned_cols=44 Identities=20% Similarity=0.397 Sum_probs=29.7
Q ss_pred CCCcEEEEEeeeEEecCCCCccEEEEEEEEeeCCCccccEEEEeEEEEecc
Q 022498 233 NPGHWVHYRVADFVVEDPSESTKIKFSLTQIDCTHTKGGLCVDSVLICPSS 283 (296)
Q Consensus 233 ~~DgW~EielGEF~~~~~~~~~eV~fsl~E~~~~~wK~GLiV~GIeIRPk~ 283 (296)
..++|.+++ |.|..... ...+++-+ |.. -..-+.|+.|.|.++.
T Consensus 127 ~~g~Wt~L~-g~ft~p~~--~~~~~lyv-e~~---~~~~f~vDdvsl~~~~ 170 (540)
T 2w5f_A 127 VAGEWTEIS-AKYKAPKT--AVNITLSI-TTD---STVDFIFDDVTITRKG 170 (540)
T ss_dssp ETTCCEEEE-EEEECCTT--EEEEEEEE-EES---SCCCEEEEEEEEEEC-
T ss_pred eCCeeEEEE-eEEEecCC--CeEEEEEE-EcC---CCCCEEEEEEEEecCc
Confidence 468999999 79987553 34454433 332 2456899999998764
Done!