Query 022501
Match_columns 296
No_of_seqs 148 out of 1501
Neff 10.0
Searched_HMMs 46136
Date Fri Mar 29 04:01:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022501.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022501hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03210 Resistant to P. syrin 99.7 2.1E-17 4.6E-22 165.0 13.7 204 7-239 611-843 (1153)
2 PLN00113 leucine-rich repeat r 99.7 2.4E-17 5.3E-22 163.2 12.2 60 6-69 117-176 (968)
3 PLN00113 leucine-rich repeat r 99.7 3.6E-17 7.9E-22 162.0 13.0 229 7-255 69-318 (968)
4 PLN03210 Resistant to P. syrin 99.7 2.7E-16 5.8E-21 157.1 14.2 230 5-255 556-835 (1153)
5 KOG4194 Membrane glycoprotein 99.6 1.2E-16 2.6E-21 141.3 3.3 81 7-94 173-253 (873)
6 KOG4194 Membrane glycoprotein 99.6 1.4E-16 3E-21 140.9 -0.7 254 5-284 147-408 (873)
7 KOG0444 Cytoskeletal regulator 99.4 1.1E-14 2.3E-19 130.3 -4.2 231 6-256 102-350 (1255)
8 KOG0444 Cytoskeletal regulator 99.3 1.1E-13 2.3E-18 124.0 -3.6 128 7-147 126-254 (1255)
9 PRK15370 E3 ubiquitin-protein 99.2 1.7E-10 3.7E-15 109.6 13.2 227 7-284 178-404 (754)
10 PRK15387 E3 ubiquitin-protein 99.2 1.8E-10 3.8E-15 109.2 11.0 211 7-256 222-456 (788)
11 PRK15370 E3 ubiquitin-protein 99.1 1E-10 2.3E-15 111.1 7.5 115 7-147 199-313 (754)
12 KOG3207 Beta-tubulin folding c 99.1 1.1E-11 2.4E-16 106.7 0.3 213 6-230 120-335 (505)
13 PRK15387 E3 ubiquitin-protein 99.1 1.9E-09 4.1E-14 102.3 14.7 198 8-257 202-414 (788)
14 KOG4237 Extracellular matrix p 99.1 1.1E-11 2.4E-16 105.5 -1.6 230 8-253 68-354 (498)
15 KOG4658 Apoptotic ATPase [Sign 99.1 1.9E-10 4.1E-15 111.0 6.4 265 6-288 544-850 (889)
16 KOG0472 Leucine-rich repeat pr 99.1 2.5E-12 5.5E-17 109.6 -5.7 108 135-256 432-539 (565)
17 cd00116 LRR_RI Leucine-rich re 99.0 2.6E-11 5.7E-16 105.2 -1.6 242 6-256 22-289 (319)
18 KOG0618 Serine/threonine phosp 99.0 7.5E-11 1.6E-15 110.0 1.2 207 33-256 241-487 (1081)
19 cd00116 LRR_RI Leucine-rich re 98.9 1.3E-10 2.8E-15 100.9 -0.4 240 6-253 50-315 (319)
20 KOG0472 Leucine-rich repeat pr 98.8 1.5E-11 3.2E-16 105.1 -9.0 219 6-255 67-307 (565)
21 PF13855 LRR_8: Leucine rich r 98.8 2.7E-09 5.9E-14 68.8 3.3 60 7-68 1-60 (61)
22 KOG4237 Extracellular matrix p 98.8 1.6E-10 3.4E-15 98.6 -4.2 215 5-232 89-357 (498)
23 KOG0617 Ras suppressor protein 98.8 1.7E-10 3.7E-15 87.9 -4.3 129 31-174 31-160 (264)
24 PF14580 LRR_9: Leucine-rich r 98.8 5.5E-09 1.2E-13 81.8 3.8 129 7-148 19-150 (175)
25 KOG4341 F-box protein containi 98.7 3.2E-10 6.9E-15 97.4 -4.1 240 3-253 186-434 (483)
26 KOG0618 Serine/threonine phosp 98.7 4.5E-10 9.8E-15 105.0 -4.1 200 8-234 288-489 (1081)
27 KOG0617 Ras suppressor protein 98.7 9.5E-10 2.1E-14 83.8 -2.4 152 85-256 32-184 (264)
28 KOG4341 F-box protein containi 98.7 2.3E-10 4.9E-15 98.2 -7.4 219 7-236 138-387 (483)
29 KOG4658 Apoptotic ATPase [Sign 98.6 8.3E-08 1.8E-12 93.0 6.8 234 8-256 524-781 (889)
30 KOG3207 Beta-tubulin folding c 98.6 4.4E-09 9.6E-14 90.9 -1.7 165 2-176 141-313 (505)
31 KOG2120 SCF ubiquitin ligase, 98.4 2.8E-09 6.1E-14 88.0 -7.2 185 33-232 185-374 (419)
32 PF14580 LRR_9: Leucine-rich r 98.4 1.8E-07 3.8E-12 73.4 2.9 38 33-71 19-56 (175)
33 PF13855 LRR_8: Leucine rich r 98.4 4.6E-07 1E-11 58.3 4.2 60 33-97 1-60 (61)
34 KOG2120 SCF ubiquitin ligase, 98.3 7E-09 1.5E-13 85.7 -6.3 184 57-253 185-371 (419)
35 PRK15386 type III secretion pr 98.2 3.9E-06 8.5E-11 73.9 7.9 59 32-101 51-109 (426)
36 PRK15386 type III secretion pr 98.1 1.6E-05 3.5E-10 70.1 9.4 140 53-231 48-187 (426)
37 KOG1644 U2-associated snRNP A' 98.1 5.4E-06 1.2E-10 65.2 5.2 108 8-124 43-150 (233)
38 COG4886 Leucine-rich repeat (L 97.9 1.3E-05 2.7E-10 71.9 4.0 61 8-72 117-178 (394)
39 KOG3665 ZYG-1-like serine/thre 97.8 5.6E-06 1.2E-10 78.5 0.9 129 7-147 122-259 (699)
40 COG4886 Leucine-rich repeat (L 97.8 1.6E-05 3.4E-10 71.3 3.0 153 8-180 141-293 (394)
41 PF12799 LRR_4: Leucine Rich r 97.8 3.6E-05 7.8E-10 45.7 3.4 38 8-48 2-39 (44)
42 KOG2982 Uncharacterized conser 97.7 6E-06 1.3E-10 68.7 -0.2 83 162-251 197-285 (418)
43 KOG1947 Leucine rich repeat pr 97.7 1.8E-06 3.8E-11 79.2 -3.9 142 31-175 186-332 (482)
44 PF12799 LRR_4: Leucine Rich r 97.7 3.3E-05 7.2E-10 45.8 2.8 41 33-74 1-41 (44)
45 KOG0532 Leucine-rich repeat (L 97.7 1.8E-06 4E-11 77.5 -3.9 97 37-147 79-175 (722)
46 PLN03150 hypothetical protein; 97.6 8.8E-05 1.9E-09 70.3 5.9 110 34-153 419-530 (623)
47 KOG1947 Leucine rich repeat pr 97.6 4.6E-06 1E-10 76.5 -2.8 141 84-231 186-331 (482)
48 KOG1259 Nischarin, modulator o 97.6 1.4E-05 3E-10 66.7 0.3 206 6-232 181-410 (490)
49 KOG1259 Nischarin, modulator o 97.6 8.3E-06 1.8E-10 68.0 -1.2 128 32-175 283-410 (490)
50 PLN03150 hypothetical protein; 97.5 0.00018 3.9E-09 68.3 6.7 112 58-179 419-530 (623)
51 KOG0532 Leucine-rich repeat (L 97.5 2.8E-06 6.1E-11 76.3 -6.2 192 10-231 78-270 (722)
52 KOG3665 ZYG-1-like serine/thre 97.3 0.00016 3.4E-09 68.9 2.6 136 33-175 60-206 (699)
53 KOG1644 U2-associated snRNP A' 97.2 0.00046 9.9E-09 54.6 3.7 90 5-98 62-152 (233)
54 KOG2982 Uncharacterized conser 97.1 0.00035 7.7E-09 58.4 3.0 80 6-95 70-155 (418)
55 KOG1909 Ran GTPase-activating 97.1 3.9E-05 8.4E-10 65.2 -2.9 200 31-233 90-310 (382)
56 KOG2123 Uncharacterized conser 96.7 9.7E-05 2.1E-09 61.1 -3.9 41 32-74 18-58 (388)
57 KOG2123 Uncharacterized conser 96.5 5.9E-05 1.3E-09 62.4 -5.9 105 6-120 18-123 (388)
58 KOG2739 Leucine-rich acidic nu 96.4 0.0011 2.3E-08 54.5 0.6 109 31-148 41-153 (260)
59 KOG1859 Leucine-rich repeat pr 96.3 0.0001 2.2E-09 68.5 -6.4 80 4-95 184-263 (1096)
60 KOG0531 Protein phosphatase 1, 96.1 0.0029 6.3E-08 57.2 1.9 105 4-124 92-196 (414)
61 KOG2739 Leucine-rich acidic nu 96.0 0.0018 4E-08 53.1 0.1 110 6-125 42-154 (260)
62 KOG0531 Protein phosphatase 1, 95.8 0.002 4.3E-08 58.2 -0.5 125 6-148 71-196 (414)
63 PF13306 LRR_5: Leucine rich r 95.8 0.06 1.3E-06 39.7 7.6 101 31-146 10-111 (129)
64 KOG1909 Ran GTPase-activating 95.8 0.0011 2.4E-08 56.6 -2.2 140 7-150 157-310 (382)
65 PF13306 LRR_5: Leucine rich r 95.1 0.16 3.4E-06 37.4 7.9 107 50-173 5-112 (129)
66 KOG3864 Uncharacterized conser 94.9 0.0029 6.3E-08 50.1 -2.0 65 85-151 124-189 (221)
67 KOG3864 Uncharacterized conser 94.9 0.0028 6.1E-08 50.2 -2.2 40 194-234 150-189 (221)
68 KOG1859 Leucine-rich repeat pr 94.0 0.0057 1.2E-07 57.4 -2.7 85 5-98 207-291 (1096)
69 KOG4579 Leucine-rich repeat (L 93.7 0.014 3.1E-07 43.5 -0.5 58 33-96 53-110 (177)
70 PF13504 LRR_7: Leucine rich r 93.5 0.064 1.4E-06 24.5 1.6 12 34-45 2-13 (17)
71 PF00560 LRR_1: Leucine Rich R 93.1 0.028 6E-07 27.6 0.1 12 9-20 2-13 (22)
72 smart00370 LRR Leucine-rich re 91.5 0.18 3.9E-06 25.7 2.0 21 33-53 2-22 (26)
73 smart00369 LRR_TYP Leucine-ric 91.5 0.18 3.9E-06 25.7 2.0 21 33-53 2-22 (26)
74 KOG4579 Leucine-rich repeat (L 91.0 0.019 4.2E-07 42.8 -2.7 63 7-72 53-115 (177)
75 smart00367 LRR_CC Leucine-rich 87.9 0.34 7.5E-06 24.7 1.3 17 220-236 1-17 (26)
76 KOG3763 mRNA export factor TAP 84.8 0.27 5.9E-06 45.0 -0.1 90 3-92 214-307 (585)
77 smart00365 LRR_SD22 Leucine-ri 81.6 0.95 2.1E-05 23.2 1.2 17 6-22 1-17 (26)
78 COG5238 RNA1 Ran GTPase-activa 80.3 0.62 1.3E-05 39.1 0.3 198 31-231 90-313 (388)
79 PF13516 LRR_6: Leucine Rich r 74.6 1.4 3.1E-05 21.7 0.6 14 7-20 2-15 (24)
80 KOG3763 mRNA export factor TAP 66.9 1.5 3.2E-05 40.4 -0.6 65 137-201 243-307 (585)
81 smart00368 LRR_RI Leucine rich 51.1 9.3 0.0002 19.7 1.0 13 8-20 3-15 (28)
82 smart00364 LRR_BAC Leucine-ric 47.0 13 0.00028 19.1 1.1 16 34-49 3-18 (26)
83 COG5238 RNA1 Ran GTPase-activa 46.4 28 0.00061 29.6 3.6 218 6-231 29-282 (388)
No 1
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.74 E-value=2.1e-17 Score=164.96 Aligned_cols=204 Identities=21% Similarity=0.278 Sum_probs=110.1
Q ss_pred ccceEEEeeccCccccccCCCCCCcCCCccEEEeccCCC-CccChHHHhcCCcccEEEEeccccceEeecCccccccCCc
Q 022501 7 ANLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKS-DNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGML 85 (296)
Q Consensus 7 ~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~-~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 85 (296)
.+|++|++.+++++.++ ..+. .+++|+.|+++++.. ..+|. +..+++|++|++.+|.. +..++.....+
T Consensus 611 ~~L~~L~L~~s~l~~L~-~~~~--~l~~Lk~L~Ls~~~~l~~ip~--ls~l~~Le~L~L~~c~~-----L~~lp~si~~L 680 (1153)
T PLN03210 611 ENLVKLQMQGSKLEKLW-DGVH--SLTGLRNIDLRGSKNLKEIPD--LSMATNLETLKLSDCSS-----LVELPSSIQYL 680 (1153)
T ss_pred cCCcEEECcCccccccc-cccc--cCCCCCEEECCCCCCcCcCCc--cccCCcccEEEecCCCC-----ccccchhhhcc
Confidence 46666666666666654 2233 577777777765543 34442 45667777777776621 11223334556
Q ss_pred cccceeEecccccccccccccCcccccCCCccEEEeccCccccccccCccccCCccEEEeccCcCccccCCcc-------
Q 022501 86 TQIKSLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCNNLINLVPSSASFENLTTLEVSYCQRLKNLVSSS------- 158 (296)
Q Consensus 86 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~------- 158 (296)
++|+.|.+++|..+..++.. . ++++|+.|.+++|..+..+|.. ..+|+.|+++++. +..++...
T Consensus 681 ~~L~~L~L~~c~~L~~Lp~~----i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~-i~~lP~~~~l~~L~~ 751 (1153)
T PLN03210 681 NKLEDLDMSRCENLEILPTG----I-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETA-IEEFPSNLRLENLDE 751 (1153)
T ss_pred CCCCEEeCCCCCCcCccCCc----C-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCc-ccccccccccccccc
Confidence 77777777777777666543 2 4566777777776655544432 2334444444322 22211100
Q ss_pred ---------------------cccCCCCccEEEEeCccccceecccccccccccccCCccceeeccCCcCcceecCCCcc
Q 022501 159 ---------------------TAKSLVCLMKLRIDGCKLMTEIISSEGDVEEDEIVFSRLKWLSLECLDSLTSFCSGNCT 217 (296)
Q Consensus 159 ---------------------~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~ 217 (296)
....+++|++|++++|+.+.+++...+. +++|+.|++.+|.+++.++...
T Consensus 752 L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~-------L~~L~~L~Ls~C~~L~~LP~~~-- 822 (1153)
T PLN03210 752 LILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQN-------LHKLEHLEIENCINLETLPTGI-- 822 (1153)
T ss_pred ccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhC-------CCCCCEEECCCCCCcCeeCCCC--
Confidence 0011235555555555554444443332 6667777777666666665432
Q ss_pred ccCCCccEEeeccCCccccccC
Q 022501 218 FKFPSLEDLFVIDCPKMMIFSF 239 (296)
Q Consensus 218 ~~~~~L~~L~l~~c~~l~~~~~ 239 (296)
.+++|+.|++++|..+..+|.
T Consensus 823 -~L~sL~~L~Ls~c~~L~~~p~ 843 (1153)
T PLN03210 823 -NLESLESLDLSGCSRLRTFPD 843 (1153)
T ss_pred -CccccCEEECCCCCccccccc
Confidence 456666666666666555443
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.72 E-value=2.4e-17 Score=163.19 Aligned_cols=60 Identities=18% Similarity=0.192 Sum_probs=33.0
Q ss_pred cccceEEEeeccCccccccCCCCCCcCCCccEEEeccCCCCccChHHHhcCCcccEEEEecccc
Q 022501 6 IANLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSY 69 (296)
Q Consensus 6 l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 69 (296)
+++|++|++++|++.+..+. + .+++|++|++++|......+..++.+++|++|++++|.+
T Consensus 117 l~~L~~L~Ls~n~l~~~~p~--~--~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l 176 (968)
T PLN00113 117 SSSLRYLNLSNNNFTGSIPR--G--SIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVL 176 (968)
T ss_pred CCCCCEEECcCCccccccCc--c--ccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcc
Confidence 46677777766665543221 2 456666666666555422223455566666666666544
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.72 E-value=3.6e-17 Score=161.96 Aligned_cols=229 Identities=14% Similarity=0.086 Sum_probs=124.5
Q ss_pred ccceEEEeeccCccccccCCCCCCcCCCccEEEeccCCCC-ccChHHHhcCCcccEEEEeccccceEeecCccccccCCc
Q 022501 7 ANLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSD-NFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGML 85 (296)
Q Consensus 7 ~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 85 (296)
.+++.|+++++++++..+..+. .+++|+.|++++|... .+|...+..+++|++|++++|.+.+..+. +.+
T Consensus 69 ~~v~~L~L~~~~i~~~~~~~~~--~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~-------~~l 139 (968)
T PLN00113 69 SRVVSIDLSGKNISGKISSAIF--RLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR-------GSI 139 (968)
T ss_pred CcEEEEEecCCCccccCChHHh--CCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc-------ccc
Confidence 4677888888777766555555 7888888888877765 67777777888888888888866544332 124
Q ss_pred cccceeEecccccccccccc--------------------cCcccccCCCccEEEeccCccccccccCccccCCccEEEe
Q 022501 86 TQIKSLKLWELSNLLHIWEQ--------------------CYKLDSVFQNLETLEIWWCNNLINLVPSSASFENLTTLEV 145 (296)
Q Consensus 86 ~~L~~L~l~~~~~l~~~~~~--------------------~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l 145 (296)
++|++|+++++.....++.. ....+..+++|+.|++++|.....+|..+..+++|+.|++
T Consensus 140 ~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 219 (968)
T PLN00113 140 PNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYL 219 (968)
T ss_pred CCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEEC
Confidence 55555555544322222222 0000333444444444444333334444444445555555
Q ss_pred ccCcCccccCCcccccCCCCccEEEEeCccccceecccccccccccccCCccceeeccCCcCcceecCCCccccCCCccE
Q 022501 146 SYCQRLKNLVSSSTAKSLVCLMKLRIDGCKLMTEIISSEGDVEEDEIVFSRLKWLSLECLDSLTSFCSGNCTFKFPSLED 225 (296)
Q Consensus 146 ~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~L~~ 225 (296)
+++......+ ..+..+++|++|++++|.....++... ..+++|++|+++++.-...++. .+..+++|+.
T Consensus 220 ~~n~l~~~~p--~~l~~l~~L~~L~L~~n~l~~~~p~~l-------~~l~~L~~L~L~~n~l~~~~p~--~l~~l~~L~~ 288 (968)
T PLN00113 220 GYNNLSGEIP--YEIGGLTSLNHLDLVYNNLTGPIPSSL-------GNLKNLQYLFLYQNKLSGPIPP--SIFSLQKLIS 288 (968)
T ss_pred cCCccCCcCC--hhHhcCCCCCEEECcCceeccccChhH-------hCCCCCCEEECcCCeeeccCch--hHhhccCcCE
Confidence 4433211111 123445555555555544332232222 2256666666665532122222 2345677777
Q ss_pred EeeccCCccccccCCcccCCCcceEEcccC
Q 022501 226 LFVIDCPKMMIFSFGVLSTPRLREVRKNWG 255 (296)
Q Consensus 226 L~l~~c~~l~~~~~~~~~~~~L~~l~l~~~ 255 (296)
|++++|.....+|..+..+++|+.++++.+
T Consensus 289 L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n 318 (968)
T PLN00113 289 LDLSDNSLSGEIPELVIQLQNLEILHLFSN 318 (968)
T ss_pred EECcCCeeccCCChhHcCCCCCcEEECCCC
Confidence 777777555556666667777888877644
No 4
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.69 E-value=2.7e-16 Score=157.13 Aligned_cols=230 Identities=22% Similarity=0.295 Sum_probs=159.9
Q ss_pred ccccceEEEeeccCcc------ccccCCCCCCcC-CCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCc
Q 022501 5 VIANLEELKLSGKDIT------MICHDHLPKHLF-QNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGE 77 (296)
Q Consensus 5 ~l~~L~~L~L~~~~~~------~~~~~~~~~~~l-~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~ 77 (296)
.|++|+.|.+..+... ...+..+. .+ ++|+.|++.+++...+|..+ ...+|++|++.++.++.++.
T Consensus 556 ~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~--~lp~~Lr~L~~~~~~l~~lP~~f--~~~~L~~L~L~~s~l~~L~~--- 628 (1153)
T PLN03210 556 GMRNLLFLKFYTKKWDQKKEVRWHLPEGFD--YLPPKLRLLRWDKYPLRCMPSNF--RPENLVKLQMQGSKLEKLWD--- 628 (1153)
T ss_pred cCccccEEEEecccccccccceeecCcchh--hcCcccEEEEecCCCCCCCCCcC--CccCCcEEECcCcccccccc---
Confidence 4788888888664321 11122233 44 46999999888888888643 46889999999887766533
Q ss_pred cccccCCccccceeEecccccccccccccCcccccCCCccEEEeccCccccccccCccccCCccEEEeccCcCccccCCc
Q 022501 78 VEKQAGMLTQIKSLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCNNLINLVPSSASFENLTTLEVSYCQRLKNLVSS 157 (296)
Q Consensus 78 ~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~ 157 (296)
....+++|+.|+++++..+..++. +..+++|++|.+.+|..+..+|..+..+++|+.|++++|..+..++..
T Consensus 629 ---~~~~l~~Lk~L~Ls~~~~l~~ip~-----ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~ 700 (1153)
T PLN03210 629 ---GVHSLTGLRNIDLRGSKNLKEIPD-----LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTG 700 (1153)
T ss_pred ---ccccCCCCCEEECCCCCCcCcCCc-----cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCc
Confidence 234588889999888877776653 556788899999888888888888888888888888888888777643
Q ss_pred ccccCCCCccEEEEeCccccceeccccccc---------c---c-------------------------------ccccC
Q 022501 158 STAKSLVCLMKLRIDGCKLMTEIISSEGDV---------E---E-------------------------------DEIVF 194 (296)
Q Consensus 158 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~---------~---~-------------------------------~~~~~ 194 (296)
.++++|+.|.+++|..++.++...... . . ....+
T Consensus 701 ---i~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~ 777 (1153)
T PLN03210 701 ---INLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLS 777 (1153)
T ss_pred ---CCCCCCCEEeCCCCCCccccccccCCcCeeecCCCccccccccccccccccccccccchhhccccccccchhhhhcc
Confidence 367788888888886654443210000 0 0 00113
Q ss_pred CccceeeccCCcCcceecCCCccccCCCccEEeeccCCccccccCCcccCCCcceEEcccC
Q 022501 195 SRLKWLSLECLDSLTSFCSGNCTFKFPSLEDLFVIDCPKMMIFSFGVLSTPRLREVRKNWG 255 (296)
Q Consensus 195 ~~L~~L~l~~~~~L~~l~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~l~l~~~ 255 (296)
++|+.|++++++.+..++.. +.++++|+.|++.+|+.++.+|... .+++|+.|+++.+
T Consensus 778 ~sL~~L~Ls~n~~l~~lP~s--i~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c 835 (1153)
T PLN03210 778 PSLTRLFLSDIPSLVELPSS--IQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGC 835 (1153)
T ss_pred ccchheeCCCCCCccccChh--hhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCC
Confidence 46677777777666666552 4678888888888888888888776 7788888888643
No 5
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.63 E-value=1.2e-16 Score=141.30 Aligned_cols=81 Identities=20% Similarity=0.308 Sum_probs=60.3
Q ss_pred ccceEEEeeccCccccccCCCCCCcCCCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCccccccCCcc
Q 022501 7 ANLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGMLT 86 (296)
Q Consensus 7 ~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 86 (296)
+++++|+|++|.|..+....|. .+.+|-.|.+++|.+..+|...|+++++|+.|++..|.++.+.-+. + ..++
T Consensus 173 ~ni~~L~La~N~It~l~~~~F~--~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~lt---F--qgL~ 245 (873)
T KOG4194|consen 173 VNIKKLNLASNRITTLETGHFD--SLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLT---F--QGLP 245 (873)
T ss_pred CCceEEeecccccccccccccc--ccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhh---h--cCch
Confidence 4688888888888887766677 7888888888888999999999999999999999888765542211 1 3366
Q ss_pred ccceeEec
Q 022501 87 QIKSLKLW 94 (296)
Q Consensus 87 ~L~~L~l~ 94 (296)
+|+.|.+.
T Consensus 246 Sl~nlklq 253 (873)
T KOG4194|consen 246 SLQNLKLQ 253 (873)
T ss_pred hhhhhhhh
Confidence 66666554
No 6
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.58 E-value=1.4e-16 Score=140.92 Aligned_cols=254 Identities=18% Similarity=0.191 Sum_probs=161.6
Q ss_pred ccccceEEEeeccCccccccCCCCCCcCCCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCccccccCC
Q 022501 5 VIANLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGM 84 (296)
Q Consensus 5 ~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 84 (296)
++|.|++|+|+.|.++++....++ .=.++++|++.+|.+.++-.+.|..+.+|..|+++.|.+..+... ...+
T Consensus 147 ~l~alrslDLSrN~is~i~~~sfp--~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r-----~Fk~ 219 (873)
T KOG4194|consen 147 ALPALRSLDLSRNLISEIPKPSFP--AKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQR-----SFKR 219 (873)
T ss_pred hHhhhhhhhhhhchhhcccCCCCC--CCCCceEEeeccccccccccccccccchheeeecccCcccccCHH-----Hhhh
Confidence 456667777777776666544444 445677777777777766666666677777777777766555331 1234
Q ss_pred ccccceeEeccccccccc-ccccCcccccCCCccEEEeccCccccccccC-ccccCCccEEEeccCcCccccCCcccccC
Q 022501 85 LTQIKSLKLWELSNLLHI-WEQCYKLDSVFQNLETLEIWWCNNLINLVPS-SASFENLTTLEVSYCQRLKNLVSSSTAKS 162 (296)
Q Consensus 85 ~~~L~~L~l~~~~~l~~~-~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~l~~L~~L~l~~c~~l~~~~~~~~~~~ 162 (296)
+++|+.|.+... .++.+ +.. +.++++|+.|.+..+ .+..+..+ +..+.++++|+++. +++..+... |..+
T Consensus 220 L~~L~~LdLnrN-~irive~lt----FqgL~Sl~nlklqrN-~I~kL~DG~Fy~l~kme~l~L~~-N~l~~vn~g-~lfg 291 (873)
T KOG4194|consen 220 LPKLESLDLNRN-RIRIVEGLT----FQGLPSLQNLKLQRN-DISKLDDGAFYGLEKMEHLNLET-NRLQAVNEG-WLFG 291 (873)
T ss_pred cchhhhhhcccc-ceeeehhhh----hcCchhhhhhhhhhc-CcccccCcceeeecccceeeccc-chhhhhhcc-cccc
Confidence 677777776532 23332 222 666777888777663 44444443 34577888888876 445555443 6788
Q ss_pred CCCccEEEEeCccccceecccccccccccccCCccceeeccCCcCcceecCCCccccCCCccEEeeccCCccccccCCc-
Q 022501 163 LVCLMKLRIDGCKLMTEIISSEGDVEEDEIVFSRLKWLSLECLDSLTSFCSGNCTFKFPSLEDLFVIDCPKMMIFSFGV- 241 (296)
Q Consensus 163 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~- 241 (296)
++.|+.|+++.+. +..+-.+. -...++|++|++++. +++.++.+. +..+..|++|.+.++ .+..+..+.
T Consensus 292 Lt~L~~L~lS~Na-I~rih~d~------WsftqkL~~LdLs~N-~i~~l~~~s-f~~L~~Le~LnLs~N-si~~l~e~af 361 (873)
T KOG4194|consen 292 LTSLEQLDLSYNA-IQRIHIDS------WSFTQKLKELDLSSN-RITRLDEGS-FRVLSQLEELNLSHN-SIDHLAEGAF 361 (873)
T ss_pred cchhhhhccchhh-hheeecch------hhhcccceeEecccc-ccccCChhH-HHHHHHhhhhccccc-chHHHHhhHH
Confidence 8899999998864 33332221 112779999999874 477777665 567788999999885 577776654
Q ss_pred ccCCCcceEEcccCCcccccCCC---c--hHHHHHHHhccCCCCCccc
Q 022501 242 LSTPRLREVRKNWGLDKGCWEGN---L--NTTIQKLCNNKLPPMVPFS 284 (296)
Q Consensus 242 ~~~~~L~~l~l~~~~~~~~~~~~---~--~~~l~~l~~~~~~~l~~~~ 284 (296)
..+.+|++|++..++..|..++. + .++++.+.... .++++++
T Consensus 362 ~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~g-Nqlk~I~ 408 (873)
T KOG4194|consen 362 VGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTG-NQLKSIP 408 (873)
T ss_pred HHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecC-ceeeecc
Confidence 35589999999988888876663 1 35555553322 3444444
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.39 E-value=1.1e-14 Score=130.31 Aligned_cols=231 Identities=19% Similarity=0.213 Sum_probs=131.0
Q ss_pred cccceEEEeeccCccccccCCCCCCcCCCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCccccccCCc
Q 022501 6 IANLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGML 85 (296)
Q Consensus 6 l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 85 (296)
+..|..|+|++|++.+.+ ..+. .-+++..|++++|.+.++|...+.+++.|-.|++++|.++.++| ...++
T Consensus 102 l~dLt~lDLShNqL~EvP-~~LE--~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPP------Q~RRL 172 (1255)
T KOG0444|consen 102 LKDLTILDLSHNQLREVP-TNLE--YAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPP------QIRRL 172 (1255)
T ss_pred cccceeeecchhhhhhcc-hhhh--hhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCH------HHHHH
Confidence 345667777777777663 3344 45777778888888888887777788888888888877766654 22446
Q ss_pred cccceeEecccccccccccccCcccccCCCccEEEeccCcc-ccccccCccccCCccEEEeccCcCccccCCcccccCCC
Q 022501 86 TQIKSLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCNN-LINLVPSSASFENLTTLEVSYCQRLKNLVSSSTAKSLV 164 (296)
Q Consensus 86 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~-l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~ 164 (296)
..|+.|.+++.|-. +..... ++.+.+|+.|++++... +..+|..+..+++|+.++++ |+++.-++. ....++
T Consensus 173 ~~LqtL~Ls~NPL~-hfQLrQ---LPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS-~N~Lp~vPe--cly~l~ 245 (1255)
T KOG0444|consen 173 SMLQTLKLSNNPLN-HFQLRQ---LPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLS-ENNLPIVPE--CLYKLR 245 (1255)
T ss_pred hhhhhhhcCCChhh-HHHHhc---CccchhhhhhhcccccchhhcCCCchhhhhhhhhcccc-ccCCCcchH--HHhhhh
Confidence 67777777765531 111110 33345566666665443 34556666666666666665 344444432 245566
Q ss_pred CccEEEEeCccccceeccccccc----------------ccccccCCccceeeccCCc-CcceecCCCccccCCCccEEe
Q 022501 165 CLMKLRIDGCKLMTEIISSEGDV----------------EEDEIVFSRLKWLSLECLD-SLTSFCSGNCTFKFPSLEDLF 227 (296)
Q Consensus 165 ~L~~L~l~~~~~~~~~~~~~~~~----------------~~~~~~~~~L~~L~l~~~~-~L~~l~~~~~~~~~~~L~~L~ 227 (296)
+|++|+++++. ++++....+.+ ..+.+-+++|+.|.+.+.. ....+|.+. +++..|+.+.
T Consensus 246 ~LrrLNLS~N~-iteL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGI--GKL~~Levf~ 322 (1255)
T KOG0444|consen 246 NLRRLNLSGNK-ITELNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGI--GKLIQLEVFH 322 (1255)
T ss_pred hhheeccCcCc-eeeeeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCcccccCCccch--hhhhhhHHHH
Confidence 66666666643 33322211110 0122335566666655421 123344433 5566666666
Q ss_pred eccCCccccccCCcccCCCcceEEcccCC
Q 022501 228 VIDCPKMMIFSFGVLSTPRLREVRKNWGL 256 (296)
Q Consensus 228 l~~c~~l~~~~~~~~~~~~L~~l~l~~~~ 256 (296)
..+ ++++-+|.++..|+.|+.|.++++.
T Consensus 323 aan-N~LElVPEglcRC~kL~kL~L~~Nr 350 (1255)
T KOG0444|consen 323 AAN-NKLELVPEGLCRCVKLQKLKLDHNR 350 (1255)
T ss_pred hhc-cccccCchhhhhhHHHHHhcccccc
Confidence 655 3566666666666666666666543
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.29 E-value=1.1e-13 Score=123.98 Aligned_cols=128 Identities=20% Similarity=0.215 Sum_probs=77.6
Q ss_pred ccceEEEeeccCccccccCCCCCCcCCCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCccccccCCcc
Q 022501 7 ANLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGMLT 86 (296)
Q Consensus 7 ~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 86 (296)
.++-.|+|++|+|+.++...+- .+..|-.||+++|....+|+. +.++.+|++|.+++|.+... .++.+ ..++
T Consensus 126 Kn~iVLNLS~N~IetIPn~lfi--nLtDLLfLDLS~NrLe~LPPQ-~RRL~~LqtL~Ls~NPL~hf-QLrQL----Psmt 197 (1255)
T KOG0444|consen 126 KNSIVLNLSYNNIETIPNSLFI--NLTDLLFLDLSNNRLEMLPPQ-IRRLSMLQTLKLSNNPLNHF-QLRQL----PSMT 197 (1255)
T ss_pred cCcEEEEcccCccccCCchHHH--hhHhHhhhccccchhhhcCHH-HHHHhhhhhhhcCCChhhHH-HHhcC----ccch
Confidence 4667899999999999766566 788889999999999999874 57889999999998854321 22221 1144
Q ss_pred ccceeEeccccc-ccccccccCcccccCCCccEEEeccCccccccccCccccCCccEEEecc
Q 022501 87 QIKSLKLWELSN-LLHIWEQCYKLDSVFQNLETLEIWWCNNLINLVPSSASFENLTTLEVSY 147 (296)
Q Consensus 87 ~L~~L~l~~~~~-l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~ 147 (296)
+|..|.+++-.. +..+|.. +..+.+|..++++. +.+..+|.....+++|++|++++
T Consensus 198 sL~vLhms~TqRTl~N~Pts----ld~l~NL~dvDlS~-N~Lp~vPecly~l~~LrrLNLS~ 254 (1255)
T KOG0444|consen 198 SLSVLHMSNTQRTLDNIPTS----LDDLHNLRDVDLSE-NNLPIVPECLYKLRNLRRLNLSG 254 (1255)
T ss_pred hhhhhhcccccchhhcCCCc----hhhhhhhhhccccc-cCCCcchHHHhhhhhhheeccCc
Confidence 455555444221 1122222 33444555555543 34444444444445555555544
No 9
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.21 E-value=1.7e-10 Score=109.65 Aligned_cols=227 Identities=17% Similarity=0.180 Sum_probs=134.2
Q ss_pred ccceEEEeeccCccccccCCCCCCcCCCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCccccccCCcc
Q 022501 7 ANLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGMLT 86 (296)
Q Consensus 7 ~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 86 (296)
.+...|++++.+++.++ ..+ .++|+.|++++|.+..+|.... ++|++|++++|.++.+.. ...+
T Consensus 178 ~~~~~L~L~~~~LtsLP-~~I----p~~L~~L~Ls~N~LtsLP~~l~---~nL~~L~Ls~N~LtsLP~--------~l~~ 241 (754)
T PRK15370 178 NNKTELRLKILGLTTIP-ACI----PEQITTLILDNNELKSLPENLQ---GNIKTLYANSNQLTSIPA--------TLPD 241 (754)
T ss_pred cCceEEEeCCCCcCcCC-ccc----ccCCcEEEecCCCCCcCChhhc---cCCCEEECCCCccccCCh--------hhhc
Confidence 45667888877777663 222 2578888888888777776443 578888888887665422 1234
Q ss_pred ccceeEecccccccccccccCcccccCCCccEEEeccCccccccccCccccCCccEEEeccCcCccccCCcccccCCCCc
Q 022501 87 QIKSLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCNNLINLVPSSASFENLTTLEVSYCQRLKNLVSSSTAKSLVCL 166 (296)
Q Consensus 87 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L 166 (296)
+|+.|.++++. +..++.. + ..+|+.|++++ +.+..+|..+ +++|+.|++++| .++.++.. ..++|
T Consensus 242 ~L~~L~Ls~N~-L~~LP~~----l--~s~L~~L~Ls~-N~L~~LP~~l--~~sL~~L~Ls~N-~Lt~LP~~----lp~sL 306 (754)
T PRK15370 242 TIQEMELSINR-ITELPER----L--PSALQSLDLFH-NKISCLPENL--PEELRYLSVYDN-SIRTLPAH----LPSGI 306 (754)
T ss_pred cccEEECcCCc-cCcCChh----H--hCCCCEEECcC-CccCcccccc--CCCCcEEECCCC-ccccCccc----chhhH
Confidence 77888887754 3444432 1 24688888875 3566666544 357888888775 45544321 12467
Q ss_pred cEEEEeCccccceecccccccccccccCCccceeeccCCcCcceecCCCccccCCCccEEeeccCCccccccCCcccCCC
Q 022501 167 MKLRIDGCKLMTEIISSEGDVEEDEIVFSRLKWLSLECLDSLTSFCSGNCTFKFPSLEDLFVIDCPKMMIFSFGVLSTPR 246 (296)
Q Consensus 167 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~ 246 (296)
+.|++++|. +..++.. .+++|+.|++.++. ++.++... .++|+.|++++| +++.+|..+ .++
T Consensus 307 ~~L~Ls~N~-Lt~LP~~---------l~~sL~~L~Ls~N~-Lt~LP~~l----~~sL~~L~Ls~N-~L~~LP~~l--p~~ 368 (754)
T PRK15370 307 THLNVQSNS-LTALPET---------LPPGLKTLEAGENA-LTSLPASL----PPELQVLDVSKN-QITVLPETL--PPT 368 (754)
T ss_pred HHHHhcCCc-cccCCcc---------ccccceeccccCCc-cccCChhh----cCcccEEECCCC-CCCcCChhh--cCC
Confidence 777777754 2333221 14577777777763 55554321 256778888776 456666543 357
Q ss_pred cceEEcccCCcccccCCCchHHHHHHHhccCCCCCccc
Q 022501 247 LREVRKNWGLDKGCWEGNLNTTIQKLCNNKLPPMVPFS 284 (296)
Q Consensus 247 L~~l~l~~~~~~~~~~~~~~~~l~~l~~~~~~~l~~~~ 284 (296)
|+.|+++.+.... +...+...++.+.+.+ .++..+|
T Consensus 369 L~~LdLs~N~Lt~-LP~~l~~sL~~LdLs~-N~L~~LP 404 (754)
T PRK15370 369 ITTLDVSRNALTN-LPENLPAALQIMQASR-NNLVRLP 404 (754)
T ss_pred cCEEECCCCcCCC-CCHhHHHHHHHHhhcc-CCcccCc
Confidence 7777776554432 2223344566666555 2344443
No 10
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.17 E-value=1.8e-10 Score=109.18 Aligned_cols=211 Identities=16% Similarity=0.111 Sum_probs=108.1
Q ss_pred ccceEEEeeccCccccccCCCCCCcCCCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecC----c-----
Q 022501 7 ANLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNG----E----- 77 (296)
Q Consensus 7 ~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~----~----- 77 (296)
++|+.|.+.+|+++.++ . ..++|++|++++|.+..+|. ..++|++|++.+|.+..+.... .
T Consensus 222 ~~L~~L~L~~N~Lt~LP-~-----lp~~Lk~LdLs~N~LtsLP~----lp~sL~~L~Ls~N~L~~Lp~lp~~L~~L~Ls~ 291 (788)
T PRK15387 222 AHITTLVIPDNNLTSLP-A-----LPPELRTLEVSGNQLTSLPV----LPPGLLELSIFSNPLTHLPALPSGLCKLWIFG 291 (788)
T ss_pred cCCCEEEccCCcCCCCC-C-----CCCCCcEEEecCCccCcccC----cccccceeeccCCchhhhhhchhhcCEEECcC
Confidence 35677777777776653 1 24677777777776666652 2355666666655444332100 0
Q ss_pred --cccccCCccccceeEeccccccccccccc------------CcccccC-CCccEEEeccCccccccccCccccCCccE
Q 022501 78 --VEKQAGMLTQIKSLKLWELSNLLHIWEQC------------YKLDSVF-QNLETLEIWWCNNLINLVPSSASFENLTT 142 (296)
Q Consensus 78 --~~~~~~~~~~L~~L~l~~~~~l~~~~~~~------------~~~~~~~-~~L~~L~l~~~~~l~~~~~~~~~l~~L~~ 142 (296)
+......+++|+.|+++++ .+..++... ...++.+ .+|+.|+++++ .+..+|.. .++|+.
T Consensus 292 N~Lt~LP~~p~~L~~LdLS~N-~L~~Lp~lp~~L~~L~Ls~N~L~~LP~lp~~Lq~LdLS~N-~Ls~LP~l---p~~L~~ 366 (788)
T PRK15387 292 NQLTSLPVLPPGLQELSVSDN-QLASLPALPSELCKLWAYNNQLTSLPTLPSGLQELSVSDN-QLASLPTL---PSELYK 366 (788)
T ss_pred CccccccccccccceeECCCC-ccccCCCCcccccccccccCccccccccccccceEecCCC-ccCCCCCC---Ccccce
Confidence 0000011355666666654 233322100 0000001 13444444432 33333321 233444
Q ss_pred EEeccCcCccccCCcccccCCCCccEEEEeCccccceecccccccccccccCCccceeeccCCcCcceecCCCccccCCC
Q 022501 143 LEVSYCQRLKNLVSSSTAKSLVCLMKLRIDGCKLMTEIISSEGDVEEDEIVFSRLKWLSLECLDSLTSFCSGNCTFKFPS 222 (296)
Q Consensus 143 L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~ 222 (296)
|+++++ .+..++. ...+|+.|++++|. +..++. ..++|+.|+++++. ++.++.. ..+
T Consensus 367 L~Ls~N-~L~~LP~-----l~~~L~~LdLs~N~-Lt~LP~----------l~s~L~~LdLS~N~-LssIP~l-----~~~ 423 (788)
T PRK15387 367 LWAYNN-RLTSLPA-----LPSGLKELIVSGNR-LTSLPV----------LPSELKELMVSGNR-LTSLPML-----PSG 423 (788)
T ss_pred ehhhcc-ccccCcc-----cccccceEEecCCc-ccCCCC----------cccCCCEEEccCCc-CCCCCcc-----hhh
Confidence 444432 2332221 12356666666653 332322 14577888888754 6665532 246
Q ss_pred ccEEeeccCCccccccCCcccCCCcceEEcccCC
Q 022501 223 LEDLFVIDCPKMMIFSFGVLSTPRLREVRKNWGL 256 (296)
Q Consensus 223 L~~L~l~~c~~l~~~~~~~~~~~~L~~l~l~~~~ 256 (296)
|+.|+++++ +++.+|..+..+++|+.++++.+.
T Consensus 424 L~~L~Ls~N-qLt~LP~sl~~L~~L~~LdLs~N~ 456 (788)
T PRK15387 424 LLSLSVYRN-QLTRLPESLIHLSSETTVNLEGNP 456 (788)
T ss_pred hhhhhhccC-cccccChHHhhccCCCeEECCCCC
Confidence 888888875 678888888788999999997654
No 11
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.13 E-value=1e-10 Score=111.06 Aligned_cols=115 Identities=17% Similarity=0.228 Sum_probs=72.6
Q ss_pred ccceEEEeeccCccccccCCCCCCcCCCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCccccccCCcc
Q 022501 7 ANLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGMLT 86 (296)
Q Consensus 7 ~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 86 (296)
++|+.|++++|+++.++. . .+++|+.|++++|....+|... .++|+.|++++|.+..+.. ...+
T Consensus 199 ~~L~~L~Ls~N~LtsLP~-~----l~~nL~~L~Ls~N~LtsLP~~l---~~~L~~L~Ls~N~L~~LP~--------~l~s 262 (754)
T PRK15370 199 EQITTLILDNNELKSLPE-N----LQGNIKTLYANSNQLTSIPATL---PDTIQEMELSINRITELPE--------RLPS 262 (754)
T ss_pred cCCcEEEecCCCCCcCCh-h----hccCCCEEECCCCccccCChhh---hccccEEECcCCccCcCCh--------hHhC
Confidence 578899999998887642 2 3468999999888877777533 2478888888887665422 1134
Q ss_pred ccceeEecccccccccccccCcccccCCCccEEEeccCccccccccCccccCCccEEEecc
Q 022501 87 QIKSLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCNNLINLVPSSASFENLTTLEVSY 147 (296)
Q Consensus 87 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~ 147 (296)
+|+.|.+++ ..+..++.. + +++|+.|++++| .+..+|..+ .++|+.|++++
T Consensus 263 ~L~~L~Ls~-N~L~~LP~~----l--~~sL~~L~Ls~N-~Lt~LP~~l--p~sL~~L~Ls~ 313 (754)
T PRK15370 263 ALQSLDLFH-NKISCLPEN----L--PEELRYLSVYDN-SIRTLPAHL--PSGITHLNVQS 313 (754)
T ss_pred CCCEEECcC-CccCccccc----c--CCCCcEEECCCC-ccccCcccc--hhhHHHHHhcC
Confidence 677777774 345555432 1 246777777765 455454332 23455555554
No 12
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.11 E-value=1.1e-11 Score=106.67 Aligned_cols=213 Identities=15% Similarity=0.219 Sum_probs=142.4
Q ss_pred cccceEEEeeccCccccccCCCCCCcCCCccEEEeccCCCCcc--ChHHHhcCCcccEEEEeccccceEeecCccccccC
Q 022501 6 IANLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSDNF--SIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAG 83 (296)
Q Consensus 6 l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 83 (296)
+.+|++..|.+..++..+... ..+.|++++.||+++|..... -..+++++|+|+.|.++.|.+.-..... ...
T Consensus 120 ~kkL~~IsLdn~~V~~~~~~~-~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~----~~~ 194 (505)
T KOG3207|consen 120 LKKLREISLDNYRVEDAGIEE-YSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSN----TTL 194 (505)
T ss_pred HHhhhheeecCccccccchhh-hhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCcccc----chh
Confidence 678888889887777664321 223899999999999877632 2356789999999999988544333211 113
Q ss_pred CccccceeEeccccccc-ccccccCcccccCCCccEEEeccCccccccccCccccCCccEEEeccCcCccccCCcccccC
Q 022501 84 MLTQIKSLKLWELSNLL-HIWEQCYKLDSVFQNLETLEIWWCNNLINLVPSSASFENLTTLEVSYCQRLKNLVSSSTAKS 162 (296)
Q Consensus 84 ~~~~L~~L~l~~~~~l~-~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~ 162 (296)
.+++|+.|.++.|.--+ ++... ...+|+|+.|.+.++.....-......++.|+.|++++.+.+ +.......+.
T Consensus 195 ~l~~lK~L~l~~CGls~k~V~~~----~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li-~~~~~~~~~~ 269 (505)
T KOG3207|consen 195 LLSHLKQLVLNSCGLSWKDVQWI----LLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLI-DFDQGYKVGT 269 (505)
T ss_pred hhhhhheEEeccCCCCHHHHHHH----HHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccc-cccccccccc
Confidence 58899999999886421 11111 566899999999987544333334445778999999986544 4444445688
Q ss_pred CCCccEEEEeCccccceecccccccccccccCCccceeeccCCcCcceecCCCccccCCCccEEeecc
Q 022501 163 LVCLMKLRIDGCKLMTEIISSEGDVEEDEIVFSRLKWLSLECLDSLTSFCSGNCTFKFPSLEDLFVID 230 (296)
Q Consensus 163 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~L~~L~l~~ 230 (296)
+|.|+.|.++.|. ++++-..+.+.......||+|+.|.+...+ ++++..-.....+++|+.|.+..
T Consensus 270 l~~L~~Lnls~tg-i~si~~~d~~s~~kt~~f~kL~~L~i~~N~-I~~w~sl~~l~~l~nlk~l~~~~ 335 (505)
T KOG3207|consen 270 LPGLNQLNLSSTG-IASIAEPDVESLDKTHTFPKLEYLNISENN-IRDWRSLNHLRTLENLKHLRITL 335 (505)
T ss_pred ccchhhhhccccC-cchhcCCCccchhhhcccccceeeecccCc-cccccccchhhccchhhhhhccc
Confidence 9999999998875 344333333333345569999999998754 55554434345677778777644
No 13
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.10 E-value=1.9e-09 Score=102.31 Aligned_cols=198 Identities=18% Similarity=0.141 Sum_probs=106.8
Q ss_pred cceEEEeeccCccccccCCCCCCcCCCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCccccccCCccc
Q 022501 8 NLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGMLTQ 87 (296)
Q Consensus 8 ~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 87 (296)
.-..|++++++++.++ ..++ ++|+.|++.+|.+..+|. .+++|++|++++|.++.+.. ..++
T Consensus 202 ~~~~LdLs~~~LtsLP-~~l~----~~L~~L~L~~N~Lt~LP~----lp~~Lk~LdLs~N~LtsLP~---------lp~s 263 (788)
T PRK15387 202 GNAVLNVGESGLTTLP-DCLP----AHITTLVIPDNNLTSLPA----LPPELRTLEVSGNQLTSLPV---------LPPG 263 (788)
T ss_pred CCcEEEcCCCCCCcCC-cchh----cCCCEEEccCCcCCCCCC----CCCCCcEEEecCCccCcccC---------cccc
Confidence 4567899999888774 3333 589999999999888884 46899999999998876632 1456
Q ss_pred cceeEecccccccccccccCcccccCCCccEEEeccCccccccccCccccCCccEEEeccCcCccccCCcc---------
Q 022501 88 IKSLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCNNLINLVPSSASFENLTTLEVSYCQRLKNLVSSS--------- 158 (296)
Q Consensus 88 L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~--------- 158 (296)
|+.|.+.++. +..++. .+++|+.|.++++ .+..+|.. +++|+.|+++++ .+..++...
T Consensus 264 L~~L~Ls~N~-L~~Lp~-------lp~~L~~L~Ls~N-~Lt~LP~~---p~~L~~LdLS~N-~L~~Lp~lp~~L~~L~Ls 330 (788)
T PRK15387 264 LLELSIFSNP-LTHLPA-------LPSGLCKLWIFGN-QLTSLPVL---PPGLQELSVSDN-QLASLPALPSELCKLWAY 330 (788)
T ss_pred cceeeccCCc-hhhhhh-------chhhcCEEECcCC-cccccccc---ccccceeECCCC-ccccCCCCcccccccccc
Confidence 6777666543 333321 1123444444443 23333321 234444444432 222221100
Q ss_pred -----cc-cCCCCccEEEEeCccccceecccccccccccccCCccceeeccCCcCcceecCCCccccCCCccEEeeccCC
Q 022501 159 -----TA-KSLVCLMKLRIDGCKLMTEIISSEGDVEEDEIVFSRLKWLSLECLDSLTSFCSGNCTFKFPSLEDLFVIDCP 232 (296)
Q Consensus 159 -----~~-~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~L~~L~l~~c~ 232 (296)
.+ ....+|+.|++++|. +..++.. .++|+.|++++. .+..++.. ..+|+.|+++++
T Consensus 331 ~N~L~~LP~lp~~Lq~LdLS~N~-Ls~LP~l----------p~~L~~L~Ls~N-~L~~LP~l-----~~~L~~LdLs~N- 392 (788)
T PRK15387 331 NNQLTSLPTLPSGLQELSVSDNQ-LASLPTL----------PSELYKLWAYNN-RLTSLPAL-----PSGLKELIVSGN- 392 (788)
T ss_pred cCccccccccccccceEecCCCc-cCCCCCC----------Ccccceehhhcc-ccccCccc-----ccccceEEecCC-
Confidence 00 011356666665543 2333221 335555555542 24443321 245777777665
Q ss_pred ccccccCCcccCCCcceEEcccCCc
Q 022501 233 KMMIFSFGVLSTPRLREVRKNWGLD 257 (296)
Q Consensus 233 ~l~~~~~~~~~~~~L~~l~l~~~~~ 257 (296)
.++.+|.. .++|+.|+++.+..
T Consensus 393 ~Lt~LP~l---~s~L~~LdLS~N~L 414 (788)
T PRK15387 393 RLTSLPVL---PSELKELMVSGNRL 414 (788)
T ss_pred cccCCCCc---ccCCCEEEccCCcC
Confidence 45556542 35677777765543
No 14
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.07 E-value=1.1e-11 Score=105.48 Aligned_cols=230 Identities=16% Similarity=0.107 Sum_probs=136.7
Q ss_pred cceEEEeeccCccccccCCCCCCcCCCccEEEeccCCCCccChHHHhcCCcccEEEEec-cccceEeec--Cc-------
Q 022501 8 NLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRN-SSYKEIFSN--GE------- 77 (296)
Q Consensus 8 ~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~--~~------- 77 (296)
.-.+++|..|.|+.+++..|. .+++|+.|||++|.+..+.+..|+++++|-+|.+.+ |+|+.+... .+
T Consensus 68 ~tveirLdqN~I~~iP~~aF~--~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrL 145 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPPGAFK--TLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRL 145 (498)
T ss_pred cceEEEeccCCcccCChhhcc--chhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHH
Confidence 456788888999999888888 899999999999999888888889999988888887 666665431 11
Q ss_pred ----------cccccCCccccceeEecccccccccccccCcccccCCCccEEEeccCccc------------cccccCcc
Q 022501 78 ----------VEKQAGMLTQIKSLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCNNL------------INLVPSSA 135 (296)
Q Consensus 78 ----------~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l------------~~~~~~~~ 135 (296)
.......+++|..|++.+. .++.+.... +..+..++.+++...+.. ...+....
T Consensus 146 llNan~i~Cir~~al~dL~~l~lLslyDn-~~q~i~~~t---f~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~iets 221 (498)
T KOG4237|consen 146 LLNANHINCIRQDALRDLPSLSLLSLYDN-KIQSICKGT---FQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETS 221 (498)
T ss_pred hcChhhhcchhHHHHHHhhhcchhcccch-hhhhhcccc---ccchhccchHhhhcCccccccccchhhhHHhhchhhcc
Confidence 0001112444444444432 122332211 334455666665543311 01111111
Q ss_pred ccC----------------------CccEE---EeccCcCccccCCcccccCCCCccEEEEeCccccceecccccccccc
Q 022501 136 SFE----------------------NLTTL---EVSYCQRLKNLVSSSTAKSLVCLMKLRIDGCKLMTEIISSEGDVEED 190 (296)
Q Consensus 136 ~l~----------------------~L~~L---~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 190 (296)
++. .++.+ ..+.|. .....+...+..+++|++|+++++. ++.+-. .+
T Consensus 222 garc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~-~d~~cP~~cf~~L~~L~~lnlsnN~-i~~i~~------~a 293 (498)
T KOG4237|consen 222 GARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDF-PDSICPAKCFKKLPNLRKLNLSNNK-ITRIED------GA 293 (498)
T ss_pred cceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccC-cCCcChHHHHhhcccceEeccCCCc-cchhhh------hh
Confidence 110 01111 111121 1122222346778999999999865 333321 23
Q ss_pred cccCCccceeeccCCcCcceecCCCccccCCCccEEeeccCCccccccCCcccCCCcceEEcc
Q 022501 191 EIVFSRLKWLSLECLDSLTSFCSGNCTFKFPSLEDLFVIDCPKMMIFSFGVLSTPRLREVRKN 253 (296)
Q Consensus 191 ~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~l~l~ 253 (296)
+....++++|.+... ++..+..+. +..+..|++|+++++..-..-|..+..+.+|.++.+-
T Consensus 294 Fe~~a~l~eL~L~~N-~l~~v~~~~-f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~ 354 (498)
T KOG4237|consen 294 FEGAAELQELYLTRN-KLEFVSSGM-FQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLL 354 (498)
T ss_pred hcchhhhhhhhcCcc-hHHHHHHHh-hhccccceeeeecCCeeEEEecccccccceeeeeehc
Confidence 455788999999874 466665443 7788999999999964434445556677889999885
No 15
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.07 E-value=1.9e-10 Score=110.97 Aligned_cols=265 Identities=17% Similarity=0.120 Sum_probs=151.9
Q ss_pred cccceEEEeeccC--ccccccCCCCCCcCCCccEEEeccCCCC-ccChHHHhcCCcccEEEEeccccceEeecCcccccc
Q 022501 6 IANLEELKLSGKD--ITMICHDHLPKHLFQNLKSLEIVSDKSD-NFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQA 82 (296)
Q Consensus 6 l~~L~~L~L~~~~--~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 82 (296)
.|+|.+|-+.++. +..+....|. .+|.|+.||+++|... .+|. .++.+-+|++|+++++.+++++ ...
T Consensus 544 ~~~L~tLll~~n~~~l~~is~~ff~--~m~~LrVLDLs~~~~l~~LP~-~I~~Li~LryL~L~~t~I~~LP------~~l 614 (889)
T KOG4658|consen 544 NPKLRTLLLQRNSDWLLEISGEFFR--SLPLLRVLDLSGNSSLSKLPS-SIGELVHLRYLDLSDTGISHLP------SGL 614 (889)
T ss_pred CCccceEEEeecchhhhhcCHHHHh--hCcceEEEECCCCCccCcCCh-HHhhhhhhhcccccCCCccccc------hHH
Confidence 5677788877764 5555444456 7888888888877665 5664 6777888888888888766552 233
Q ss_pred CCccccceeEecccccccccccccCcccccCCCccEEEeccCc-ccc-ccccCccccCCccEEEeccCcC----------
Q 022501 83 GMLTQIKSLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCN-NLI-NLVPSSASFENLTTLEVSYCQR---------- 150 (296)
Q Consensus 83 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~-~l~-~~~~~~~~l~~L~~L~l~~c~~---------- 150 (296)
+++..|.+|++.....+..++.. ...+++|++|.+..-. ... .......++.+|+.+.+..++.
T Consensus 615 ~~Lk~L~~Lnl~~~~~l~~~~~i----~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~ 690 (889)
T KOG4658|consen 615 GNLKKLIYLNLEVTGRLESIPGI----LLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSVLLLEDLLGMT 690 (889)
T ss_pred HHHHhhheeccccccccccccch----hhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchhHhHhhhhhhH
Confidence 45666777776665555444221 3335666666665432 000 0001112223333332222111
Q ss_pred -------------ccccCCcccccCCCCccEEEEeCccccceecccccccccccc-cCCccceeeccCCcCcceecCCCc
Q 022501 151 -------------LKNLVSSSTAKSLVCLMKLRIDGCKLMTEIISSEGDVEEDEI-VFSRLKWLSLECLDSLTSFCSGNC 216 (296)
Q Consensus 151 -------------l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~L~~l~~~~~ 216 (296)
.......+....+.+|+.|.|.+|...+........ .... .|+++..+.+.+|..++++....
T Consensus 691 ~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~--~~~~~~f~~l~~~~~~~~~~~r~l~~~~- 767 (889)
T KOG4658|consen 691 RLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEES--LIVLLCFPNLSKVSILNCHMLRDLTWLL- 767 (889)
T ss_pred HHHHHhHhhhhcccccceeecccccccCcceEEEEcCCCchhhcccccc--cchhhhHHHHHHHHhhccccccccchhh-
Confidence 000011123567889999999999865433211110 0111 37788888888888888776532
Q ss_pred cccCCCccEEeeccCCccccccCCcccCCCcc----------eEE-ccc-CCcc-cccCCCchHHHHHHHhccCCCCCcc
Q 022501 217 TFKFPSLEDLFVIDCPKMMIFSFGVLSTPRLR----------EVR-KNW-GLDK-GCWEGNLNTTIQKLCNNKLPPMVPF 283 (296)
Q Consensus 217 ~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~----------~l~-l~~-~~~~-~~~~~~~~~~l~~l~~~~~~~l~~~ 283 (296)
..|+|+.|.+..|+.++.+......+..++ .+. +.. .+.. .+|..--...+.++.+..||++..+
T Consensus 768 --f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l~~~~~l~~l~~i~~~~l~~~~l~~~~ve~~p~l~~~ 845 (889)
T KOG4658|consen 768 --FAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEGLRMLCSLGGLPQLYWLPLSFLKLEELIVEECPKLGKL 845 (889)
T ss_pred --ccCcccEEEEecccccccCCCHHHHhhhcccEEecccccccceeeecCCCCceeEecccCccchhheehhcCcccccC
Confidence 568899999999988877544332333333 331 211 1111 1333322345888889999999999
Q ss_pred chhhh
Q 022501 284 SSRFL 288 (296)
Q Consensus 284 ~~~~~ 288 (296)
|...+
T Consensus 846 P~~~~ 850 (889)
T KOG4658|consen 846 PLLST 850 (889)
T ss_pred ccccc
Confidence 87753
No 16
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.06 E-value=2.5e-12 Score=109.61 Aligned_cols=108 Identities=17% Similarity=0.125 Sum_probs=62.7
Q ss_pred cccCCccEEEeccCcCccccCCcccccCCCCccEEEEeCccccceecccccccccccccCCccceeeccCCcCcceecCC
Q 022501 135 ASFENLTTLEVSYCQRLKNLVSSSTAKSLVCLMKLRIDGCKLMTEIISSEGDVEEDEIVFSRLKWLSLECLDSLTSFCSG 214 (296)
Q Consensus 135 ~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~ 214 (296)
..+++|..|++++ +.+.+++.. ++++..|+.|+++.+. ...++.-... ...++.+-.+ -.++..++..
T Consensus 432 ~~l~kLt~L~L~N-N~Ln~LP~e--~~~lv~Lq~LnlS~Nr-Fr~lP~~~y~-------lq~lEtllas-~nqi~~vd~~ 499 (565)
T KOG0472|consen 432 SQLQKLTFLDLSN-NLLNDLPEE--MGSLVRLQTLNLSFNR-FRMLPECLYE-------LQTLETLLAS-NNQIGSVDPS 499 (565)
T ss_pred Hhhhcceeeeccc-chhhhcchh--hhhhhhhheecccccc-cccchHHHhh-------HHHHHHHHhc-cccccccChH
Confidence 3455666666654 234444422 3455556666666552 1222211111 1122222222 2345666554
Q ss_pred CccccCCCccEEeeccCCccccccCCcccCCCcceEEcccCC
Q 022501 215 NCTFKFPSLEDLFVIDCPKMMIFSFGVLSTPRLREVRKNWGL 256 (296)
Q Consensus 215 ~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~l~l~~~~ 256 (296)
. .+.+.+|.+|++.+. .+..+|.+.+.+++|++++++++.
T Consensus 500 ~-l~nm~nL~tLDL~nN-dlq~IPp~LgnmtnL~hLeL~gNp 539 (565)
T KOG0472|consen 500 G-LKNMRNLTTLDLQNN-DLQQIPPILGNMTNLRHLELDGNP 539 (565)
T ss_pred H-hhhhhhcceeccCCC-chhhCChhhccccceeEEEecCCc
Confidence 3 467899999999885 688899999999999999997554
No 17
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.01 E-value=2.6e-11 Score=105.23 Aligned_cols=242 Identities=17% Similarity=0.040 Sum_probs=138.9
Q ss_pred cccceEEEeeccCccccc----cCCCCCCcCCCccEEEeccCCCCccC------hHHHhcCCcccEEEEeccccceEeec
Q 022501 6 IANLEELKLSGKDITMIC----HDHLPKHLFQNLKSLEIVSDKSDNFS------IGFLQRFHNVERLKLRNSSYKEIFSN 75 (296)
Q Consensus 6 l~~L~~L~L~~~~~~~~~----~~~~~~~~l~~L~~L~l~~~~~~~~~------~~~~~~l~~L~~L~l~~~~~~~~~~~ 75 (296)
+++|++|.++++.++... ...+. ..+++++|+++++.....+ ...+..+++|++|++++|.+....+
T Consensus 22 l~~L~~l~l~~~~l~~~~~~~i~~~l~--~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~- 98 (319)
T cd00116 22 LLCLQVLRLEGNTLGEEAAKALASALR--PQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGC- 98 (319)
T ss_pred HhhccEEeecCCCCcHHHHHHHHHHHh--hCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHH-
Confidence 567899999997764321 12223 5688999999877655212 2345678899999999886653211
Q ss_pred CccccccCCccccceeEecccccccccccccCcccccC-CCccEEEeccCcccc----ccccCccccCCccEEEeccCcC
Q 022501 76 GEVEKQAGMLTQIKSLKLWELSNLLHIWEQCYKLDSVF-QNLETLEIWWCNNLI----NLVPSSASFENLTTLEVSYCQR 150 (296)
Q Consensus 76 ~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~-~~L~~L~l~~~~~l~----~~~~~~~~l~~L~~L~l~~c~~ 150 (296)
..+...... ++|++|.++++.-...-.......+..+ ++|+.|++++|.... .+...+..+++|+.|++++|.
T Consensus 99 ~~~~~l~~~-~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~- 176 (319)
T cd00116 99 GVLESLLRS-SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNG- 176 (319)
T ss_pred HHHHHHhcc-CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCC-
Confidence 111111112 5599999988753210000000013445 789999999886432 222234445789999998865
Q ss_pred ccccCC---cccccCCCCccEEEEeCccccceecccccccccccccCCccceeeccCCcCcceecCCCccc----cCCCc
Q 022501 151 LKNLVS---SSTAKSLVCLMKLRIDGCKLMTEIISSEGDVEEDEIVFSRLKWLSLECLDSLTSFCSGNCTF----KFPSL 223 (296)
Q Consensus 151 l~~~~~---~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~----~~~~L 223 (296)
+.+-.. ......+++|++|++++|..-...... .......+++|++|++++++ +.+........ ..+.|
T Consensus 177 l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~---l~~~~~~~~~L~~L~ls~n~-l~~~~~~~l~~~~~~~~~~L 252 (319)
T cd00116 177 IGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASA---LAETLASLKSLEVLNLGDNN-LTDAGAAALASALLSPNISL 252 (319)
T ss_pred CchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHH---HHHHhcccCCCCEEecCCCc-CchHHHHHHHHHHhccCCCc
Confidence 332110 012344569999999988532111100 01123347899999999875 44322111111 23789
Q ss_pred cEEeeccCCcc----ccccCCcccCCCcceEEcccCC
Q 022501 224 EDLFVIDCPKM----MIFSFGVLSTPRLREVRKNWGL 256 (296)
Q Consensus 224 ~~L~l~~c~~l----~~~~~~~~~~~~L~~l~l~~~~ 256 (296)
+.|++.+|..- ..+.......++|++++++.+.
T Consensus 253 ~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~ 289 (319)
T cd00116 253 LTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNK 289 (319)
T ss_pred eEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCC
Confidence 99999998532 1223333355789999997543
No 18
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.01 E-value=7.5e-11 Score=110.03 Aligned_cols=207 Identities=20% Similarity=0.237 Sum_probs=118.9
Q ss_pred CCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEee-----------------cCccccccCCccccceeEecc
Q 022501 33 QNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFS-----------------NGEVEKQAGMLTQIKSLKLWE 95 (296)
Q Consensus 33 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-----------------~~~~~~~~~~~~~L~~L~l~~ 95 (296)
.+|++++++.+....+| +++..+.+|+.+.+..|.+..+.. +..++.....+.+|++|.+..
T Consensus 241 ~nl~~~dis~n~l~~lp-~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~ 319 (1081)
T KOG0618|consen 241 LNLQYLDISHNNLSNLP-EWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQS 319 (1081)
T ss_pred ccceeeecchhhhhcch-HHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehh
Confidence 56777777777777777 567777777777777665533321 111222223356666666654
Q ss_pred cccccccccccCc----------------------ccccCCCccEEEeccCccccccccCccccCCccEEEeccCcCccc
Q 022501 96 LSNLLHIWEQCYK----------------------LDSVFQNLETLEIWWCNNLINLVPSSASFENLTTLEVSYCQRLKN 153 (296)
Q Consensus 96 ~~~l~~~~~~~~~----------------------~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~ 153 (296)
. ++.+++..... .....+.|+.|.+.++..-....+.+.++.+|+.|+++++ .+..
T Consensus 320 N-~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyN-rL~~ 397 (1081)
T KOG0618|consen 320 N-NLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYN-RLNS 397 (1081)
T ss_pred c-cccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeeccc-cccc
Confidence 2 22222211100 0122334555555554333344445666778888888764 3444
Q ss_pred cCCcccccCCCCccEEEEeCccccceecccccccccccccCCccceeeccCCcCcceecCCCccccCCCccEEeeccCCc
Q 022501 154 LVSSSTAKSLVCLMKLRIDGCKLMTEIISSEGDVEEDEIVFSRLKWLSLECLDSLTSFCSGNCTFKFPSLEDLFVIDCPK 233 (296)
Q Consensus 154 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~L~~L~l~~c~~ 233 (296)
++ .+....++.||+|.++++. ++.++..... +++|++|...+. .+..+| .+..++.|+.++++ |+.
T Consensus 398 fp-as~~~kle~LeeL~LSGNk-L~~Lp~tva~-------~~~L~tL~ahsN-~l~~fP---e~~~l~qL~~lDlS-~N~ 463 (1081)
T KOG0618|consen 398 FP-ASKLRKLEELEELNLSGNK-LTTLPDTVAN-------LGRLHTLRAHSN-QLLSFP---ELAQLPQLKVLDLS-CNN 463 (1081)
T ss_pred CC-HHHHhchHHhHHHhcccch-hhhhhHHHHh-------hhhhHHHhhcCC-ceeech---hhhhcCcceEEecc-cch
Confidence 33 2356777888888888853 5555544333 777887777653 355555 24577889999994 456
Q ss_pred cccccCCcccC-CCcceEEcccCC
Q 022501 234 MMIFSFGVLST-PRLREVRKNWGL 256 (296)
Q Consensus 234 l~~~~~~~~~~-~~L~~l~l~~~~ 256 (296)
+..+-...... ++|++|+++++.
T Consensus 464 L~~~~l~~~~p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 464 LSEVTLPEALPSPNLKYLDLSGNT 487 (1081)
T ss_pred hhhhhhhhhCCCcccceeeccCCc
Confidence 76643333233 789999998543
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.93 E-value=1.3e-10 Score=100.93 Aligned_cols=240 Identities=19% Similarity=0.080 Sum_probs=140.5
Q ss_pred cccceEEEeeccCcccc------ccCCCCCCcCCCccEEEeccCCCCccChHHHhcCCc---ccEEEEeccccceEeecC
Q 022501 6 IANLEELKLSGKDITMI------CHDHLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHN---VERLKLRNSSYKEIFSNG 76 (296)
Q Consensus 6 l~~L~~L~L~~~~~~~~------~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~---L~~L~l~~~~~~~~~~~~ 76 (296)
.+++++|+++++.+... .+..+. .+++|+.|++++|.........+..+.+ |++|++++|.+... ...
T Consensus 50 ~~~l~~l~l~~~~~~~~~~~~~~~~~~l~--~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~-~~~ 126 (319)
T cd00116 50 QPSLKELCLSLNETGRIPRGLQSLLQGLT--KGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDR-GLR 126 (319)
T ss_pred CCCceEEeccccccCCcchHHHHHHHHHH--hcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchH-HHH
Confidence 56799999988765521 012233 5789999999998887444445555554 99999999965431 111
Q ss_pred ccccccCCc-cccceeEecccccccccccccCcccccCCCccEEEeccCcccc----ccccCccccCCccEEEeccCcCc
Q 022501 77 EVEKQAGML-TQIKSLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCNNLI----NLVPSSASFENLTTLEVSYCQRL 151 (296)
Q Consensus 77 ~~~~~~~~~-~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~----~~~~~~~~l~~L~~L~l~~c~~l 151 (296)
.+......+ ++|+.|.++++.-...........+..+++|++|++.+|..-. .++.....+++|++|++++|. +
T Consensus 127 ~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-i 205 (319)
T cd00116 127 LLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNG-L 205 (319)
T ss_pred HHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCc-c
Confidence 112222345 8999999998864311101101114556789999999875332 122233445799999999875 3
Q ss_pred cccCC---cccccCCCCccEEEEeCccccceecccccccccccccCCccceeeccCCcCcceecC---CCccccCCCccE
Q 022501 152 KNLVS---SSTAKSLVCLMKLRIDGCKLMTEIISSEGDVEEDEIVFSRLKWLSLECLDSLTSFCS---GNCTFKFPSLED 225 (296)
Q Consensus 152 ~~~~~---~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~---~~~~~~~~~L~~ 225 (296)
.+... ...+..+++|++|++++|.....-...... ......+.|++|++++|. +++... ......+++|+.
T Consensus 206 ~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~--~~~~~~~~L~~L~l~~n~-i~~~~~~~l~~~~~~~~~L~~ 282 (319)
T cd00116 206 TDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALAS--ALLSPNISLLTLSLSCND-ITDDGAKDLAEVLAEKESLLE 282 (319)
T ss_pred ChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHH--HHhccCCCceEEEccCCC-CCcHHHHHHHHHHhcCCCccE
Confidence 32211 123456789999999998632211110000 000124799999999984 432111 111235588999
Q ss_pred EeeccCCcccc-----ccCCcccC-CCcceEEcc
Q 022501 226 LFVIDCPKMMI-----FSFGVLST-PRLREVRKN 253 (296)
Q Consensus 226 L~l~~c~~l~~-----~~~~~~~~-~~L~~l~l~ 253 (296)
++++++. +.. +....... +.|++++|.
T Consensus 283 l~l~~N~-l~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (319)
T cd00116 283 LDLRGNK-FGEEGAQLLAESLLEPGNELESLWVK 315 (319)
T ss_pred EECCCCC-CcHHHHHHHHHHHhhcCCchhhcccC
Confidence 9999975 432 22222223 577777774
No 20
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.85 E-value=1.5e-11 Score=105.05 Aligned_cols=219 Identities=16% Similarity=0.161 Sum_probs=113.6
Q ss_pred cccceEEEeeccCccccccCCCCCCcCCCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCccccccCCc
Q 022501 6 IANLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGML 85 (296)
Q Consensus 6 l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 85 (296)
++.|.+|.+++|++..++ ..++ .+.+++.|+++.|.+..+|. .+..+.+|..++++.+.+.++.+ .++.+
T Consensus 67 L~~l~vl~~~~n~l~~lp-~aig--~l~~l~~l~vs~n~ls~lp~-~i~s~~~l~~l~~s~n~~~el~~------~i~~~ 136 (565)
T KOG0472|consen 67 LACLTVLNVHDNKLSQLP-AAIG--ELEALKSLNVSHNKLSELPE-QIGSLISLVKLDCSSNELKELPD------SIGRL 136 (565)
T ss_pred ccceeEEEeccchhhhCC-HHHH--HHHHHHHhhcccchHhhccH-HHhhhhhhhhhhccccceeecCc------hHHHH
Confidence 455666666666665553 3344 45666666666666666664 33445666666666554444432 11222
Q ss_pred cccceeEecccccccccccccCcccccCCCccEEEeccC----------------------ccccccccCccccCCccEE
Q 022501 86 TQIKSLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWC----------------------NNLINLVPSSASFENLTTL 143 (296)
Q Consensus 86 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~----------------------~~l~~~~~~~~~l~~L~~L 143 (296)
..|..+.-.+. ++.+++.. +..+.+|..+.+.+. +.++.+|+..+++.+|..|
T Consensus 137 ~~l~dl~~~~N-~i~slp~~----~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~L 211 (565)
T KOG0472|consen 137 LDLEDLDATNN-QISSLPED----MVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLETLPPELGGLESLELL 211 (565)
T ss_pred hhhhhhhcccc-ccccCchH----HHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhhcCChhhcchhhhHHH
Confidence 22322222211 12222222 223333334444332 2344455555555555555
Q ss_pred EeccCcCccccCCcccccCCCCccEEEEeCccccceecccccccccccccCCccceeeccCCcCcceecCCCccccCCCc
Q 022501 144 EVSYCQRLKNLVSSSTAKSLVCLMKLRIDGCKLMTEIISSEGDVEEDEIVFSRLKWLSLECLDSLTSFCSGNCTFKFPSL 223 (296)
Q Consensus 144 ~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~L 223 (296)
++.. +.+..++ .+.++..|++|+++.+ .++-++.... ..+++|..|++++. +++++|.+. -.+.+|
T Consensus 212 yL~~-Nki~~lP---ef~gcs~L~Elh~g~N-~i~~lpae~~------~~L~~l~vLDLRdN-klke~Pde~--clLrsL 277 (565)
T KOG0472|consen 212 YLRR-NKIRFLP---EFPGCSLLKELHVGEN-QIEMLPAEHL------KHLNSLLVLDLRDN-KLKEVPDEI--CLLRSL 277 (565)
T ss_pred Hhhh-cccccCC---CCCccHHHHHHHhccc-HHHhhHHHHh------cccccceeeecccc-ccccCchHH--HHhhhh
Confidence 5543 2333332 2344445555555543 2222322221 23778888888874 578887755 446778
Q ss_pred cEEeeccCCccccccCCcccCCCcceEEcccC
Q 022501 224 EDLFVIDCPKMMIFSFGVLSTPRLREVRKNWG 255 (296)
Q Consensus 224 ~~L~l~~c~~l~~~~~~~~~~~~L~~l~l~~~ 255 (296)
++|++++. .+..+|...+.+ .|+.+.+.++
T Consensus 278 ~rLDlSNN-~is~Lp~sLgnl-hL~~L~leGN 307 (565)
T KOG0472|consen 278 ERLDLSNN-DISSLPYSLGNL-HLKFLALEGN 307 (565)
T ss_pred hhhcccCC-ccccCCcccccc-eeeehhhcCC
Confidence 88888874 677888877777 7777776543
No 21
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.84 E-value=2.7e-09 Score=68.78 Aligned_cols=60 Identities=27% Similarity=0.406 Sum_probs=52.5
Q ss_pred ccceEEEeeccCccccccCCCCCCcCCCccEEEeccCCCCccChHHHhcCCcccEEEEeccc
Q 022501 7 ANLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSS 68 (296)
Q Consensus 7 ~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 68 (296)
|+|++|++++|+++.+++..+. .+++|++|++++|.+..++++.|..+++|++|++++|.
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~--~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFS--NLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTT--TGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHc--CCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 6789999999999988777777 88999999999998888888888899999999998874
No 22
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.81 E-value=1.6e-10 Score=98.59 Aligned_cols=215 Identities=21% Similarity=0.139 Sum_probs=131.9
Q ss_pred ccccceEEEeeccCccccccCCCCCCcCCCccEEEecc-CCCCccChHHHhcCCcccEEEEeccccceEee--------c
Q 022501 5 VIANLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVS-DKSDNFSIGFLQRFHNVERLKLRNSSYKEIFS--------N 75 (296)
Q Consensus 5 ~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~--------~ 75 (296)
.+++|+.|+|++|+|+.|.+..|. .+++|-.|-+.+ |.+..+|.+.|+++.+|+.|.+..|++.-+.. +
T Consensus 89 ~l~~LRrLdLS~N~Is~I~p~AF~--GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l 166 (498)
T KOG4237|consen 89 TLHRLRRLDLSKNNISFIAPDAFK--GLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSL 166 (498)
T ss_pred chhhhceecccccchhhcChHhhh--hhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhc
Confidence 478899999999999999999998 999999999976 88889999999999999988887664432211 1
Q ss_pred ----------Cccc-cccCCccccceeEeccccccc--------ccccccCcccccCC----------------------
Q 022501 76 ----------GEVE-KQAGMLTQIKSLKLWELSNLL--------HIWEQCYKLDSVFQ---------------------- 114 (296)
Q Consensus 76 ----------~~~~-~~~~~~~~L~~L~l~~~~~l~--------~~~~~~~~~~~~~~---------------------- 114 (296)
+.+. ..+..+.+++.+.+...+-+. +.........+.+.
T Consensus 167 ~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c 246 (498)
T KOG4237|consen 167 SLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLC 246 (498)
T ss_pred chhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhh
Confidence 1111 133446677777666544111 10000000000000
Q ss_pred CccEE---EeccCccccccc-cCccccCCccEEEeccCcCccccCCcccccCCCCccEEEEeCccccceecccccccccc
Q 022501 115 NLETL---EIWWCNNLINLV-PSSASFENLTTLEVSYCQRLKNLVSSSTAKSLVCLMKLRIDGCKLMTEIISSEGDVEED 190 (296)
Q Consensus 115 ~L~~L---~l~~~~~l~~~~-~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 190 (296)
.++.+ .-..|.-...-| ..+..+++|+.|++++ +.++.+-.. ++.+...+++|.+..+. ++.+.. ..
T Consensus 247 ~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsn-N~i~~i~~~-aFe~~a~l~eL~L~~N~-l~~v~~------~~ 317 (498)
T KOG4237|consen 247 SLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSN-NKITRIEDG-AFEGAAELQELYLTRNK-LEFVSS------GM 317 (498)
T ss_pred hHHhHHHhhccccCcCCcChHHHHhhcccceEeccCC-Cccchhhhh-hhcchhhhhhhhcCcch-HHHHHH------Hh
Confidence 01111 000110000011 1245678888888886 456655443 56777888888888864 332222 23
Q ss_pred cccCCccceeeccCCcCcceecCCCccccCCCccEEeeccCC
Q 022501 191 EIVFSRLKWLSLECLDSLTSFCSGNCTFKFPSLEDLFVIDCP 232 (296)
Q Consensus 191 ~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~L~~L~l~~c~ 232 (296)
++.+..|+.|++.+. +++.+.++. +....+|.+|.+-.+|
T Consensus 318 f~~ls~L~tL~L~~N-~it~~~~~a-F~~~~~l~~l~l~~Np 357 (498)
T KOG4237|consen 318 FQGLSGLKTLSLYDN-QITTVAPGA-FQTLFSLSTLNLLSNP 357 (498)
T ss_pred hhccccceeeeecCC-eeEEEeccc-ccccceeeeeehccCc
Confidence 556888888988884 477777766 6677788888877654
No 23
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=98.78 E-value=1.7e-10 Score=87.87 Aligned_cols=129 Identities=19% Similarity=0.189 Sum_probs=88.5
Q ss_pred cCCCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCccccccCCccccceeEecccccccccccccCccc
Q 022501 31 LFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGMLTQIKSLKLWELSNLLHIWEQCYKLD 110 (296)
Q Consensus 31 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~ 110 (296)
.+.+...|.+++|.....|+. ++.+.+|+.|.+.+++++++. .++.+++.|+.|+++ +..+..+|.+ +
T Consensus 31 ~~s~ITrLtLSHNKl~~vppn-ia~l~nlevln~~nnqie~lp------~~issl~klr~lnvg-mnrl~~lprg----f 98 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLTVVPPN-IAELKNLEVLNLSNNQIEELP------TSISSLPKLRILNVG-MNRLNILPRG----F 98 (264)
T ss_pred chhhhhhhhcccCceeecCCc-HHHhhhhhhhhcccchhhhcC------hhhhhchhhhheecc-hhhhhcCccc----c
Confidence 357778889999999888875 567999999999999887773 355668888888886 5556555555 6
Q ss_pred ccCCCccEEEeccCccc-cccccCccccCCccEEEeccCcCccccCCcccccCCCCccEEEEeCc
Q 022501 111 SVFQNLETLEIWWCNNL-INLVPSSASFENLTTLEVSYCQRLKNLVSSSTAKSLVCLMKLRIDGC 174 (296)
Q Consensus 111 ~~~~~L~~L~l~~~~~l-~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~ 174 (296)
+.+|.|+.|++..++.- ..+|-.+..+..|+-|++++. ..+.+++ -.+.+++|+.|.+.++
T Consensus 99 gs~p~levldltynnl~e~~lpgnff~m~tlralyl~dn-dfe~lp~--dvg~lt~lqil~lrdn 160 (264)
T KOG0617|consen 99 GSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDN-DFEILPP--DVGKLTNLQILSLRDN 160 (264)
T ss_pred CCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCC-CcccCCh--hhhhhcceeEEeeccC
Confidence 77888888888765433 345555666677777777653 2333332 2455666666666554
No 24
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.77 E-value=5.5e-09 Score=81.81 Aligned_cols=129 Identities=19% Similarity=0.194 Sum_probs=47.8
Q ss_pred ccceEEEeeccCccccccCCCCCCcCCCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCccccccCCcc
Q 022501 7 ANLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGMLT 86 (296)
Q Consensus 7 ~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 86 (296)
.++++|+|+++.|+.+. .++. .+.+|+.|++++|.+..+. .+..+++|++|++.+|.+..+.+ ++ ...++
T Consensus 19 ~~~~~L~L~~n~I~~Ie--~L~~-~l~~L~~L~Ls~N~I~~l~--~l~~L~~L~~L~L~~N~I~~i~~--~l---~~~lp 88 (175)
T PF14580_consen 19 VKLRELNLRGNQISTIE--NLGA-TLDKLEVLDLSNNQITKLE--GLPGLPRLKTLDLSNNRISSISE--GL---DKNLP 88 (175)
T ss_dssp -------------------S--T-T-TT--EEE-TTS--S--T--T----TT--EEE--SS---S-CH--HH---HHH-T
T ss_pred ccccccccccccccccc--chhh-hhcCCCEEECCCCCCcccc--CccChhhhhhcccCCCCCCcccc--ch---HHhCC
Confidence 36789999999988874 2331 5789999999999998776 35678999999999998877622 11 02388
Q ss_pred ccceeEecccccccccccccCcccccCCCccEEEeccCcccccc---ccCccccCCccEEEeccC
Q 022501 87 QIKSLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCNNLINL---VPSSASFENLTTLEVSYC 148 (296)
Q Consensus 87 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~---~~~~~~l~~L~~L~l~~c 148 (296)
+|++|.+++.. +.++.. ...+..+++|+.|++.+++....- ...+..+|+|+.|+-...
T Consensus 89 ~L~~L~L~~N~-I~~l~~--l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~V 150 (175)
T PF14580_consen 89 NLQELYLSNNK-ISDLNE--LEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQDV 150 (175)
T ss_dssp T--EEE-TTS----SCCC--CGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEET
T ss_pred cCCEEECcCCc-CCChHH--hHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEEc
Confidence 99999998643 333211 222667899999999988754321 112445788998866543
No 25
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.75 E-value=3.2e-10 Score=97.38 Aligned_cols=240 Identities=20% Similarity=0.201 Sum_probs=145.8
Q ss_pred ccccccceEEEeec-cCccccccCCCCCCcCCCccEEEeccCCCCcc--ChHHHhcCCcccEEEEeccccceEeecCccc
Q 022501 3 VQVIANLEELKLSG-KDITMICHDHLPKHLFQNLKSLEIVSDKSDNF--SIGFLQRFHNVERLKLRNSSYKEIFSNGEVE 79 (296)
Q Consensus 3 ~~~l~~L~~L~L~~-~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 79 (296)
.+.+++|+.|.+.. ..+++..-..+. ..|++|++|+++.|+...- -.....++..++.+...|| .+. +++.+.
T Consensus 186 a~~C~~l~~l~L~~c~~iT~~~Lk~la-~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC--~e~-~le~l~ 261 (483)
T KOG4341|consen 186 ARYCRKLRHLNLHSCSSITDVSLKYLA-EGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGC--LEL-ELEALL 261 (483)
T ss_pred HHhcchhhhhhhcccchhHHHHHHHHH-HhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhccc--ccc-cHHHHH
Confidence 35678888888887 666665322121 2789999999987765421 1124556777888777777 332 112222
Q ss_pred cccCCccccceeEecccccccccccccCcccccCCCccEEEeccCcccccccc--CccccCCccEEEeccCcCccccCCc
Q 022501 80 KQAGMLTQIKSLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCNNLINLVP--SSASFENLTTLEVSYCQRLKNLVSS 157 (296)
Q Consensus 80 ~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~--~~~~l~~L~~L~l~~c~~l~~~~~~ 157 (296)
.....+.-+.++++..|..+.+... ......+..||.+..++|..+.+.+. -..+.++|+.|.+.+|..+++.-..
T Consensus 262 ~~~~~~~~i~~lnl~~c~~lTD~~~--~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft 339 (483)
T KOG4341|consen 262 KAAAYCLEILKLNLQHCNQLTDEDL--WLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFT 339 (483)
T ss_pred HHhccChHhhccchhhhccccchHH--HHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhh
Confidence 2223355566667777766654321 11134456788888888877655443 2355678888888888877766544
Q ss_pred ccccCCCCccEEEEeCccccceecccccccccccccCCccceeeccCCcCcceecC---CCccccCCCccEEeeccCCcc
Q 022501 158 STAKSLVCLMKLRIDGCKLMTEIISSEGDVEEDEIVFSRLKWLSLECLDSLTSFCS---GNCTFKFPSLEDLFVIDCPKM 234 (296)
Q Consensus 158 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~---~~~~~~~~~L~~L~l~~c~~l 234 (296)
....+.+.|+.+++..|..+..- ........+|.|+++.++.|..+++.-. .........|+.+.+.+|+.+
T Consensus 340 ~l~rn~~~Le~l~~e~~~~~~d~-----tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i 414 (483)
T KOG4341|consen 340 MLGRNCPHLERLDLEECGLITDG-----TLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLI 414 (483)
T ss_pred hhhcCChhhhhhcccccceehhh-----hHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCc
Confidence 45667788888888887654322 0111223478888888887776665411 111234566888888888877
Q ss_pred ccccC-CcccCCCcceEEcc
Q 022501 235 MIFSF-GVLSTPRLREVRKN 253 (296)
Q Consensus 235 ~~~~~-~~~~~~~L~~l~l~ 253 (296)
+.-.. ....+++|+.+++.
T Consensus 415 ~d~~Le~l~~c~~Leri~l~ 434 (483)
T KOG4341|consen 415 TDATLEHLSICRNLERIELI 434 (483)
T ss_pred hHHHHHHHhhCcccceeeee
Confidence 55222 22366778877774
No 26
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.73 E-value=4.5e-10 Score=104.95 Aligned_cols=200 Identities=20% Similarity=0.247 Sum_probs=108.7
Q ss_pred cceEEEeeccCccccccCCCCCCcCCCccEEEeccCCCCccChHHHhcCCc-ccEEEEeccccceEeecCccccccCCcc
Q 022501 8 NLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHN-VERLKLRNSSYKEIFSNGEVEKQAGMLT 86 (296)
Q Consensus 8 ~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~-L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 86 (296)
+|++|....|+++.+++ ..+ .++.|++|++..|.+..+|..++.-... |+.|..+.+.++.....++ ..++
T Consensus 288 ~L~~l~~~~nel~yip~-~le--~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e-----~~~~ 359 (1081)
T KOG0618|consen 288 SLVSLSAAYNELEYIPP-FLE--GLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEE-----NNHA 359 (1081)
T ss_pred hHHHHHhhhhhhhhCCC-ccc--ccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccc-----hhhH
Confidence 34444444444444432 122 3566666666666666666554444433 4555554444333332222 3455
Q ss_pred ccceeEecccccccccccccCcccccCCCccEEEeccCccccccccC-ccccCCccEEEeccCcCccccCCcccccCCCC
Q 022501 87 QIKSLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCNNLINLVPS-SASFENLTTLEVSYCQRLKNLVSSSTAKSLVC 165 (296)
Q Consensus 87 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~ 165 (296)
.|+.|.+.+..--...+.. +.++.+|+.|+++++ .+..+|.. ..++..|++|+++| +.++.++. ....++.
T Consensus 360 ~Lq~LylanN~Ltd~c~p~----l~~~~hLKVLhLsyN-rL~~fpas~~~kle~LeeL~LSG-NkL~~Lp~--tva~~~~ 431 (1081)
T KOG0618|consen 360 ALQELYLANNHLTDSCFPV----LVNFKHLKVLHLSYN-RLNSFPASKLRKLEELEELNLSG-NKLTTLPD--TVANLGR 431 (1081)
T ss_pred HHHHHHHhcCcccccchhh----hccccceeeeeeccc-ccccCCHHHHhchHHhHHHhccc-chhhhhhH--HHHhhhh
Confidence 6666666554322222222 667788888888773 56666653 45677788888887 35655552 2456677
Q ss_pred ccEEEEeCccccceecccccccccccccCCccceeeccCCcCcceecCCCccccCCCccEEeeccCCcc
Q 022501 166 LMKLRIDGCKLMTEIISSEGDVEEDEIVFSRLKWLSLECLDSLTSFCSGNCTFKFPSLEDLFVIDCPKM 234 (296)
Q Consensus 166 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~L~~L~l~~c~~l 234 (296)
|++|...++. +..++. ...++.|+.+|++. .+|+.+..... ..-|+|++|++.|+..+
T Consensus 432 L~tL~ahsN~-l~~fPe--------~~~l~qL~~lDlS~-N~L~~~~l~~~-~p~p~LkyLdlSGN~~l 489 (1081)
T KOG0618|consen 432 LHTLRAHSNQ-LLSFPE--------LAQLPQLKVLDLSC-NNLSEVTLPEA-LPSPNLKYLDLSGNTRL 489 (1081)
T ss_pred hHHHhhcCCc-eeechh--------hhhcCcceEEeccc-chhhhhhhhhh-CCCcccceeeccCCccc
Confidence 7777776643 334442 22377777777764 34555433221 11156888888776543
No 27
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=98.70 E-value=9.5e-10 Score=83.84 Aligned_cols=152 Identities=22% Similarity=0.173 Sum_probs=88.6
Q ss_pred ccccceeEecccccccccccccCcccccCCCccEEEeccCccccccccCccccCCccEEEeccCcCccccCCcccccCCC
Q 022501 85 LTQIKSLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCNNLINLVPSSASFENLTTLEVSYCQRLKNLVSSSTAKSLV 164 (296)
Q Consensus 85 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~ 164 (296)
++.++.|.+++. ++..++.. +..+.+|+.|.+++ +.++.+|..+..+++|++|+++ .+.+..++ ..++++|
T Consensus 32 ~s~ITrLtLSHN-Kl~~vppn----ia~l~nlevln~~n-nqie~lp~~issl~klr~lnvg-mnrl~~lp--rgfgs~p 102 (264)
T KOG0617|consen 32 MSNITRLTLSHN-KLTVVPPN----IAELKNLEVLNLSN-NQIEELPTSISSLPKLRILNVG-MNRLNILP--RGFGSFP 102 (264)
T ss_pred hhhhhhhhcccC-ceeecCCc----HHHhhhhhhhhccc-chhhhcChhhhhchhhhheecc-hhhhhcCc--cccCCCc
Confidence 555555666553 23344444 55666777777765 4667777777777777777775 34454444 2467777
Q ss_pred CccEEEEeCcccccee-cccccccccccccCCccceeeccCCcCcceecCCCccccCCCccEEeeccCCccccccCCccc
Q 022501 165 CLMKLRIDGCKLMTEI-ISSEGDVEEDEIVFSRLKWLSLECLDSLTSFCSGNCTFKFPSLEDLFVIDCPKMMIFSFGVLS 243 (296)
Q Consensus 165 ~L~~L~l~~~~~~~~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~ 243 (296)
-||.|++..++.-+.. +.. +-.++-|+-|.+.+.. .+.++.+. +++++|+.|.+++. .+-.+|..++.
T Consensus 103 ~levldltynnl~e~~lpgn-------ff~m~tlralyl~dnd-fe~lp~dv--g~lt~lqil~lrdn-dll~lpkeig~ 171 (264)
T KOG0617|consen 103 ALEVLDLTYNNLNENSLPGN-------FFYMTTLRALYLGDND-FEILPPDV--GKLTNLQILSLRDN-DLLSLPKEIGD 171 (264)
T ss_pred hhhhhhccccccccccCCcc-------hhHHHHHHHHHhcCCC-cccCChhh--hhhcceeEEeeccC-chhhCcHHHHH
Confidence 7777777765543322 221 1224555666665532 44444433 56667777777664 34466666666
Q ss_pred CCCcceEEcccCC
Q 022501 244 TPRLREVRKNWGL 256 (296)
Q Consensus 244 ~~~L~~l~l~~~~ 256 (296)
++.|+++++..++
T Consensus 172 lt~lrelhiqgnr 184 (264)
T KOG0617|consen 172 LTRLRELHIQGNR 184 (264)
T ss_pred HHHHHHHhcccce
Confidence 6777777765443
No 28
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.67 E-value=2.3e-10 Score=98.24 Aligned_cols=219 Identities=19% Similarity=0.146 Sum_probs=112.0
Q ss_pred ccceEEEeeccC-ccccccCCCCCCcCCCccEEEeccCCCCcc--ChHHHhcCCcccEEEEeccccceEeecCccccccC
Q 022501 7 ANLEELKLSGKD-ITMICHDHLPKHLFQNLKSLEIVSDKSDNF--SIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAG 83 (296)
Q Consensus 7 ~~L~~L~L~~~~-~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 83 (296)
..|++|.+++.. +.+-....+. ..+||+++|.+++|...+- -..+.+.+++|+.|.+..|. .+.. ..+.....
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~-~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~--~iT~-~~Lk~la~ 213 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFA-SNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCS--SITD-VSLKYLAE 213 (483)
T ss_pred cccccccccccccCCcchhhHHh-hhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccc--hhHH-HHHHHHHH
Confidence 356777787733 2222112222 2678888888887765421 12344567888888887762 1111 00111223
Q ss_pred CccccceeEecccccccccccccCcccccCCCccEEEeccCcc--------------------------ccccc--cCcc
Q 022501 84 MLTQIKSLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCNN--------------------------LINLV--PSSA 135 (296)
Q Consensus 84 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~--------------------------l~~~~--~~~~ 135 (296)
.|++|++|+++.|+.+..-... ....++..++++...||.. +++.. ....
T Consensus 214 gC~kL~~lNlSwc~qi~~~gv~--~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~ 291 (483)
T KOG4341|consen 214 GCRKLKYLNLSWCPQISGNGVQ--ALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIAC 291 (483)
T ss_pred hhhhHHHhhhccCchhhcCcch--HHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhh
Confidence 4788888888887766541110 0022333444444444433 22211 1122
Q ss_pred ccCCccEEEeccCcCccccCCcccccCCCCccEEEEeCccccceecccccccccccccCCccceeeccCCcCcceecCCC
Q 022501 136 SFENLTTLEVSYCQRLKNLVSSSTAKSLVCLMKLRIDGCKLMTEIISSEGDVEEDEIVFSRLKWLSLECLDSLTSFCSGN 215 (296)
Q Consensus 136 ~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~ 215 (296)
++..|+.|+.++|..+++........+.++|+.+.+..|......- .+....+.+.|+.+++..|....+-....
T Consensus 292 ~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~-----ft~l~rn~~~Le~l~~e~~~~~~d~tL~s 366 (483)
T KOG4341|consen 292 GCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRG-----FTMLGRNCPHLERLDLEECGLITDGTLAS 366 (483)
T ss_pred hhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhh-----hhhhhcCChhhhhhcccccceehhhhHhh
Confidence 3455666666666666555444444556666666666666533210 01112235666666666665444432222
Q ss_pred ccccCCCccEEeeccCCcccc
Q 022501 216 CTFKFPSLEDLFVIDCPKMMI 236 (296)
Q Consensus 216 ~~~~~~~L~~L~l~~c~~l~~ 236 (296)
...+++.|+.+.+++|..++.
T Consensus 367 ls~~C~~lr~lslshce~itD 387 (483)
T KOG4341|consen 367 LSRNCPRLRVLSLSHCELITD 387 (483)
T ss_pred hccCCchhccCChhhhhhhhh
Confidence 234666677777776665554
No 29
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.59 E-value=8.3e-08 Score=93.02 Aligned_cols=234 Identities=15% Similarity=0.162 Sum_probs=152.5
Q ss_pred cceEEEeeccCccccccCCCCCCcCCCccEEEeccCC--CCccChHHHhcCCcccEEEEeccccceEeecCccccccCCc
Q 022501 8 NLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDK--SDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGML 85 (296)
Q Consensus 8 ~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~--~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 85 (296)
..+...+-++++..+... ...++|++|-+.++. ...++..+|..+|.|+.|++++| ..+..++..++.+
T Consensus 524 ~~rr~s~~~~~~~~~~~~----~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~-----~~l~~LP~~I~~L 594 (889)
T KOG4658|consen 524 SVRRMSLMNNKIEHIAGS----SENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGN-----SSLSKLPSSIGEL 594 (889)
T ss_pred heeEEEEeccchhhccCC----CCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCC-----CccCcCChHHhhh
Confidence 445566666666665321 256789999998875 67888888999999999999987 4455566677889
Q ss_pred cccceeEecccccccccccccCcccccCCCccEEEeccCccccccccCccccCCccEEEeccCcCccccCCcccccCCCC
Q 022501 86 TQIKSLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCNNLINLVPSSASFENLTTLEVSYCQRLKNLVSSSTAKSLVC 165 (296)
Q Consensus 86 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~ 165 (296)
-+||+|++++. .++++|.. +..+..|.+|++..+..+...+.....+++|++|.+..-..-.+.........+.+
T Consensus 595 i~LryL~L~~t-~I~~LP~~----l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~ 669 (889)
T KOG4658|consen 595 VHLRYLDLSDT-GISHLPSG----LGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEH 669 (889)
T ss_pred hhhhcccccCC-CccccchH----HHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccc
Confidence 99999999864 56777777 88899999999998877777765556689999999975431111111123455666
Q ss_pred ccEEEEeCccc--ccee-------------c---ccccccccccccCCccceeeccCCcCcceecC---CCcccc-CCCc
Q 022501 166 LMKLRIDGCKL--MTEI-------------I---SSEGDVEEDEIVFSRLKWLSLECLDSLTSFCS---GNCTFK-FPSL 223 (296)
Q Consensus 166 L~~L~l~~~~~--~~~~-------------~---~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~---~~~~~~-~~~L 223 (296)
|+.+.+..+.. ++.+ . ............+.+|+.|.+.+|...+.... ...... ++++
T Consensus 670 L~~ls~~~~s~~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l 749 (889)
T KOG4658|consen 670 LENLSITISSVLLLEDLLGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNL 749 (889)
T ss_pred hhhheeecchhHhHhhhhhhHHHHHHhHhhhhcccccceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHH
Confidence 66666654432 0100 0 00011123345577888888888765432111 011122 6677
Q ss_pred cEEeeccCCccccccCCcccCCCcceEEcccCC
Q 022501 224 EDLFVIDCPKMMIFSFGVLSTPRLREVRKNWGL 256 (296)
Q Consensus 224 ~~L~l~~c~~l~~~~~~~~~~~~L~~l~l~~~~ 256 (296)
.++.+.+|.....+.. ..-.|+|+.+++.+++
T Consensus 750 ~~~~~~~~~~~r~l~~-~~f~~~L~~l~l~~~~ 781 (889)
T KOG4658|consen 750 SKVSILNCHMLRDLTW-LLFAPHLTSLSLVSCR 781 (889)
T ss_pred HHHHhhccccccccch-hhccCcccEEEEeccc
Confidence 7777888876654433 3366899999996543
No 30
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.59 E-value=4.4e-09 Score=90.94 Aligned_cols=165 Identities=15% Similarity=0.143 Sum_probs=107.3
Q ss_pred cccccccceEEEeeccCccccccCCCCCCcCCCccEEEeccCCCCccChH-HHhcCCcccEEEEeccccceEeecCcccc
Q 022501 2 DVQVIANLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSDNFSIG-FLQRFHNVERLKLRNSSYKEIFSNGEVEK 80 (296)
Q Consensus 2 ~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~ 80 (296)
+.+.||++++|+|+.|=+..|.+-.--++.||+|+.|+++.|....+... .-.-+++|+.|.+++|.+. ... +..
T Consensus 141 ~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls-~k~---V~~ 216 (505)
T KOG3207|consen 141 YSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLS-WKD---VQW 216 (505)
T ss_pred hhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCC-HHH---HHH
Confidence 34679999999999987666632211123799999999998877744432 2235789999999999654 111 122
Q ss_pred ccCCccccceeEecccccccccccccCcccccCCCccEEEeccCccccccc--cCccccCCccEEEeccCcCccccCCcc
Q 022501 81 QAGMLTQIKSLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCNNLINLV--PSSASFENLTTLEVSYCQRLKNLVSSS 158 (296)
Q Consensus 81 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~--~~~~~l~~L~~L~l~~c~~l~~~~~~~ 158 (296)
....+|+|..|.+.+...+-.-... ...+..|++|++++++.+. .+ .....||.|+.|+++.|. ++++....
T Consensus 217 ~~~~fPsl~~L~L~~N~~~~~~~~~----~~i~~~L~~LdLs~N~li~-~~~~~~~~~l~~L~~Lnls~tg-i~si~~~d 290 (505)
T KOG3207|consen 217 ILLTFPSLEVLYLEANEIILIKATS----TKILQTLQELDLSNNNLID-FDQGYKVGTLPGLNQLNLSSTG-IASIAEPD 290 (505)
T ss_pred HHHhCCcHHHhhhhcccccceecch----hhhhhHHhhccccCCcccc-cccccccccccchhhhhccccC-cchhcCCC
Confidence 3345889999988876432211111 3345679999998865443 33 234568888888887653 44432211
Q ss_pred c-----ccCCCCccEEEEeCccc
Q 022501 159 T-----AKSLVCLMKLRIDGCKL 176 (296)
Q Consensus 159 ~-----~~~l~~L~~L~l~~~~~ 176 (296)
. ...+++|++|.+..++.
T Consensus 291 ~~s~~kt~~f~kL~~L~i~~N~I 313 (505)
T KOG3207|consen 291 VESLDKTHTFPKLEYLNISENNI 313 (505)
T ss_pred ccchhhhcccccceeeecccCcc
Confidence 1 35678999999988754
No 31
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.41 E-value=2.8e-09 Score=88.04 Aligned_cols=185 Identities=19% Similarity=0.177 Sum_probs=95.3
Q ss_pred CCccEEEeccCCCC-ccChHHHhcCCcccEEEEeccccceEeecCccccccCCccccceeEecccccccccccccCcccc
Q 022501 33 QNLKSLEIVSDKSD-NFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGMLTQIKSLKLWELSNLLHIWEQCYKLDS 111 (296)
Q Consensus 33 ~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~ 111 (296)
.+|++||+++..+. ..--.++.+|.+|+.|.+.+..+...+. ..+.+=..|+.|+++.|..+..... ...+.
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~-----~~iAkN~~L~~lnlsm~sG~t~n~~--~ll~~ 257 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIV-----NTIAKNSNLVRLNLSMCSGFTENAL--QLLLS 257 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHH-----HHHhccccceeeccccccccchhHH--HHHHH
Confidence 35677777655444 2222355666666666666654333221 1112345666677776666554311 11145
Q ss_pred cCCCccEEEeccCccccccccC--ccccCCccEEEeccCcCcc-ccCCcccccCCCCccEEEEeCccccce-eccccccc
Q 022501 112 VFQNLETLEIWWCNNLINLVPS--SASFENLTTLEVSYCQRLK-NLVSSSTAKSLVCLMKLRIDGCKLMTE-IISSEGDV 187 (296)
Q Consensus 112 ~~~~L~~L~l~~~~~l~~~~~~--~~~l~~L~~L~l~~c~~l~-~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~~ 187 (296)
+++.|++|+++.|......... ...-++|+.|+++||..-- .-........+|+|.+|++++|..++. .+..
T Consensus 258 scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~---- 333 (419)
T KOG2120|consen 258 SCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQE---- 333 (419)
T ss_pred hhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHH----
Confidence 5666777777766544332111 1113466777777665321 111112245567777777777766543 1111
Q ss_pred ccccccCCccceeeccCCcCcceecCCCccccCCCccEEeeccCC
Q 022501 188 EEDEIVFSRLKWLSLECLDSLTSFCSGNCTFKFPSLEDLFVIDCP 232 (296)
Q Consensus 188 ~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~L~~L~l~~c~ 232 (296)
+-.|+.|++|.++.|+.+-.-.. ..+...|+|.+|++.+|-
T Consensus 334 ---~~kf~~L~~lSlsRCY~i~p~~~-~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 334 ---FFKFNYLQHLSLSRCYDIIPETL-LELNSKPSLVYLDVFGCV 374 (419)
T ss_pred ---HHhcchheeeehhhhcCCChHHe-eeeccCcceEEEEecccc
Confidence 22277777777777764322100 123456788888888774
No 32
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.40 E-value=1.8e-07 Score=73.37 Aligned_cols=38 Identities=16% Similarity=0.275 Sum_probs=5.7
Q ss_pred CCccEEEeccCCCCccChHHHhcCCcccEEEEeccccce
Q 022501 33 QNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKE 71 (296)
Q Consensus 33 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 71 (296)
.+++.|++.++.+..+.. .-..+.+|+.|++++|.++.
T Consensus 19 ~~~~~L~L~~n~I~~Ie~-L~~~l~~L~~L~Ls~N~I~~ 56 (175)
T PF14580_consen 19 VKLRELNLRGNQISTIEN-LGATLDKLEVLDLSNNQITK 56 (175)
T ss_dssp -----------------S---TT-TT--EEE-TTS--S-
T ss_pred cccccccccccccccccc-hhhhhcCCCEEECCCCCCcc
Confidence 345556665555554421 11234555555555554443
No 33
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.39 E-value=4.6e-07 Score=58.26 Aligned_cols=60 Identities=23% Similarity=0.325 Sum_probs=47.9
Q ss_pred CCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCccccccCCccccceeEecccc
Q 022501 33 QNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGMLTQIKSLKLWELS 97 (296)
Q Consensus 33 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 97 (296)
|+|++|++++|.+..++.+.+..+++|++|++++|.++.+.+. ....+++|++|.++++.
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~-----~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPD-----AFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETT-----TTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHH-----HHcCCCCCCEEeCcCCc
Confidence 6899999999988899988999999999999999988776431 12447788888877653
No 34
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.35 E-value=7e-09 Score=85.73 Aligned_cols=184 Identities=20% Similarity=0.157 Sum_probs=116.5
Q ss_pred CcccEEEEeccccceEeecCccccccCCccccceeEecccccccccccccCcccccCCCccEEEeccCcccccccc--Cc
Q 022501 57 HNVERLKLRNSSYKEIFSNGEVEKQAGMLTQIKSLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCNNLINLVP--SS 134 (296)
Q Consensus 57 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~--~~ 134 (296)
+.||.|+++...++ ...+......|.+|+.|++.|..--..+... +..-.+|+.++++.|..++.... -+
T Consensus 185 sRlq~lDLS~s~it----~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~----iAkN~~L~~lnlsm~sG~t~n~~~ll~ 256 (419)
T KOG2120|consen 185 SRLQHLDLSNSVIT----VSTLHGILSQCSKLKNLSLEGLRLDDPIVNT----IAKNSNLVRLNLSMCSGFTENALQLLL 256 (419)
T ss_pred hhhHHhhcchhhee----HHHHHHHHHHHHhhhhccccccccCcHHHHH----HhccccceeeccccccccchhHHHHHH
Confidence 35777777755332 2222333445888888888876544444333 45556788888888887765433 34
Q ss_pred cccCCccEEEeccCcCccccCCcccccCCCCccEEEEeCccccceecccccccccccccCCccceeeccCCcCcceecCC
Q 022501 135 ASFENLTTLEVSYCQRLKNLVSSSTAKSLVCLMKLRIDGCKLMTEIISSEGDVEEDEIVFSRLKWLSLECLDSLTSFCSG 214 (296)
Q Consensus 135 ~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~ 214 (296)
.+++.|..|+++.|...++........--++|..|++++|...-... +.+-....+|+|..|+++++..+++- .-
T Consensus 257 ~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~s----h~~tL~~rcp~l~~LDLSD~v~l~~~-~~ 331 (419)
T KOG2120|consen 257 SSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKS----HLSTLVRRCPNLVHLDLSDSVMLKND-CF 331 (419)
T ss_pred HhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhh----HHHHHHHhCCceeeeccccccccCch-HH
Confidence 56788888888888655544322222334678888888875421110 00011234899999999999888872 22
Q ss_pred CccccCCCccEEeeccCCcccc-ccCCcccCCCcceEEcc
Q 022501 215 NCTFKFPSLEDLFVIDCPKMMI-FSFGVLSTPRLREVRKN 253 (296)
Q Consensus 215 ~~~~~~~~L~~L~l~~c~~l~~-~~~~~~~~~~L~~l~l~ 253 (296)
.++-+++.|++|.++.|..+-. --..+...|+|.+|++.
T Consensus 332 ~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~ 371 (419)
T KOG2120|consen 332 QEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVF 371 (419)
T ss_pred HHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEec
Confidence 2345899999999999986521 11233577999999996
No 35
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.24 E-value=3.9e-06 Score=73.91 Aligned_cols=59 Identities=7% Similarity=0.109 Sum_probs=29.0
Q ss_pred CCCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCccccccCCccccceeEecccccccc
Q 022501 32 FQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGMLTQIKSLKLWELSNLLH 101 (296)
Q Consensus 32 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~ 101 (296)
+++++.|++++|.+..+|. -.++|++|.+.+|. .+..+.+ .-.++|+.|.+++|..+..
T Consensus 51 ~~~l~~L~Is~c~L~sLP~----LP~sLtsL~Lsnc~--nLtsLP~-----~LP~nLe~L~Ls~Cs~L~s 109 (426)
T PRK15386 51 ARASGRLYIKDCDIESLPV----LPNELTEITIENCN--NLTTLPG-----SIPEGLEKLTVCHCPEISG 109 (426)
T ss_pred hcCCCEEEeCCCCCcccCC----CCCCCcEEEccCCC--CcccCCc-----hhhhhhhheEccCcccccc
Confidence 4666666666665555551 12356666666552 1111111 1134566666666655443
No 36
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.13 E-value=1.6e-05 Score=70.13 Aligned_cols=140 Identities=15% Similarity=0.172 Sum_probs=85.6
Q ss_pred HhcCCcccEEEEeccccceEeecCccccccCCccccceeEecccccccccccccCcccccCCCccEEEeccCcccccccc
Q 022501 53 LQRFHNVERLKLRNSSYKEIFSNGEVEKQAGMLTQIKSLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCNNLINLVP 132 (296)
Q Consensus 53 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~ 132 (296)
+..+.++++|++++|.++.++. ..++|+.|.+++|..+..++.. + +++|++|.+++|..+..+|.
T Consensus 48 ~~~~~~l~~L~Is~c~L~sLP~---------LP~sLtsL~Lsnc~nLtsLP~~----L--P~nLe~L~Ls~Cs~L~sLP~ 112 (426)
T PRK15386 48 IEEARASGRLYIKDCDIESLPV---------LPNELTEITIENCNNLTTLPGS----I--PEGLEKLTVCHCPEISGLPE 112 (426)
T ss_pred HHHhcCCCEEEeCCCCCcccCC---------CCCCCcEEEccCCCCcccCCch----h--hhhhhheEccCccccccccc
Confidence 3457889999999887666631 1447999999999888776543 2 35799999998876665543
Q ss_pred CccccCCccEEEeccCcCccccCCcccccCCCCccEEEEeCccccceecccccccccccccCCccceeeccCCcCcceec
Q 022501 133 SSASFENLTTLEVSYCQRLKNLVSSSTAKSLVCLMKLRIDGCKLMTEIISSEGDVEEDEIVFSRLKWLSLECLDSLTSFC 212 (296)
Q Consensus 133 ~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~ 212 (296)
.|+.|.+.+ .....+. .-.++|+.|.+.++......... ....++|+.|.+.+|..+. ++
T Consensus 113 ------sLe~L~L~~-n~~~~L~-----~LPssLk~L~I~~~n~~~~~~lp-------~~LPsSLk~L~Is~c~~i~-LP 172 (426)
T PRK15386 113 ------SVRSLEIKG-SATDSIK-----NVPNGLTSLSINSYNPENQARID-------NLISPSLKTLSLTGCSNII-LP 172 (426)
T ss_pred ------ccceEEeCC-CCCcccc-----cCcchHhheeccccccccccccc-------cccCCcccEEEecCCCccc-Cc
Confidence 467777753 3222221 22356788887543311111000 0114689999999887543 22
Q ss_pred CCCccccCCCccEEeeccC
Q 022501 213 SGNCTFKFPSLEDLFVIDC 231 (296)
Q Consensus 213 ~~~~~~~~~~L~~L~l~~c 231 (296)
.. --.+|+.|.+..+
T Consensus 173 ~~----LP~SLk~L~ls~n 187 (426)
T PRK15386 173 EK----LPESLQSITLHIE 187 (426)
T ss_pred cc----ccccCcEEEeccc
Confidence 11 1156888888764
No 37
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.10 E-value=5.4e-06 Score=65.16 Aligned_cols=108 Identities=17% Similarity=0.203 Sum_probs=76.9
Q ss_pred cceEEEeeccCccccccCCCCCCcCCCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCccccccCCccc
Q 022501 8 NLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGMLTQ 87 (296)
Q Consensus 8 ~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 87 (296)
+...++|++|++-.+ ..++ .+++|..|.+.+|.+..+.+....-+++|.+|.+.+|++.++.++..+.. ||+
T Consensus 43 ~~d~iDLtdNdl~~l--~~lp--~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~----~p~ 114 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKL--DNLP--HLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLAS----CPK 114 (233)
T ss_pred ccceecccccchhhc--ccCC--CccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhcc----CCc
Confidence 556788888887775 3356 88999999999999998888777888999999999998888777665444 888
Q ss_pred cceeEecccccccccccccCcccccCCCccEEEeccC
Q 022501 88 IKSLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWC 124 (296)
Q Consensus 88 L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~ 124 (296)
|++|.+-+.+--.. ..=-.-.+..+|+|+.|++...
T Consensus 115 L~~Ltll~Npv~~k-~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 115 LEYLTLLGNPVEHK-KNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred cceeeecCCchhcc-cCceeEEEEecCcceEeehhhh
Confidence 88888877543111 0000011455677777777653
No 38
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=97.87 E-value=1.3e-05 Score=71.93 Aligned_cols=61 Identities=28% Similarity=0.456 Sum_probs=28.5
Q ss_pred cceEEEeeccCccccccCCCCCCcCC-CccEEEeccCCCCccChHHHhcCCcccEEEEeccccceE
Q 022501 8 NLEELKLSGKDITMICHDHLPKHLFQ-NLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEI 72 (296)
Q Consensus 8 ~L~~L~L~~~~~~~~~~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 72 (296)
.+..|.+.++.+..+. .... .+. +|+.|++.++.+..++ ..++.+++|+.|.+..|.+..+
T Consensus 117 ~l~~L~l~~n~i~~i~-~~~~--~~~~nL~~L~l~~N~i~~l~-~~~~~l~~L~~L~l~~N~l~~l 178 (394)
T COG4886 117 NLTSLDLDNNNITDIP-PLIG--LLKSNLKELDLSDNKIESLP-SPLRNLPNLKNLDLSFNDLSDL 178 (394)
T ss_pred ceeEEecCCcccccCc-cccc--cchhhcccccccccchhhhh-hhhhccccccccccCCchhhhh
Confidence 4455555555555442 1122 232 5555555555555443 1234455555555555544444
No 39
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.81 E-value=5.6e-06 Score=78.53 Aligned_cols=129 Identities=19% Similarity=0.213 Sum_probs=74.1
Q ss_pred ccceEEEeec-cCccccccCCCCCCcCCCccEEEeccCCCC--ccChHHHhcCCcccEEEEeccccceEeecCccccccC
Q 022501 7 ANLEELKLSG-KDITMICHDHLPKHLFQNLKSLEIVSDKSD--NFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAG 83 (296)
Q Consensus 7 ~~L~~L~L~~-~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~--~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 83 (296)
.+|+.|++++ ..+..-|+..++. .||+|++|.+++-... +|. ...+++|+|..|++++++++.+ .| .+
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~-~LPsL~sL~i~~~~~~~~dF~-~lc~sFpNL~sLDIS~TnI~nl---~G----IS 192 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGT-MLPSLRSLVISGRQFDNDDFS-QLCASFPNLRSLDISGTNISNL---SG----IS 192 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhh-hCcccceEEecCceecchhHH-HHhhccCccceeecCCCCccCc---HH----Hh
Confidence 5778888887 3333323334443 6788888888664433 222 3556788888888888766655 22 23
Q ss_pred CccccceeEecccccccccccccCcccccCCCccEEEeccCcccccc------ccCccccCCccEEEecc
Q 022501 84 MLTQIKSLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCNNLINL------VPSSASFENLTTLEVSY 147 (296)
Q Consensus 84 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~------~~~~~~l~~L~~L~l~~ 147 (296)
.+.+|+.|.+.+++--..- ....+.++.+|+.|+++.-...... -.....+|+|+.|+.++
T Consensus 193 ~LknLq~L~mrnLe~e~~~---~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSg 259 (699)
T KOG3665|consen 193 RLKNLQVLSMRNLEFESYQ---DLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSG 259 (699)
T ss_pred ccccHHHHhccCCCCCchh---hHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCC
Confidence 3777777777765432210 0011556777888888754332211 12233467777777664
No 40
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=97.77 E-value=1.6e-05 Score=71.31 Aligned_cols=153 Identities=27% Similarity=0.345 Sum_probs=111.3
Q ss_pred cceEEEeeccCccccccCCCCCCcCCCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCccccccCCccc
Q 022501 8 NLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGMLTQ 87 (296)
Q Consensus 8 ~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 87 (296)
+|++|+++++++..+. ..+. .+++|+.|++.+|.+..++.. ....++|+.|.++++.+..+.... .....
T Consensus 141 nL~~L~l~~N~i~~l~-~~~~--~l~~L~~L~l~~N~l~~l~~~-~~~~~~L~~L~ls~N~i~~l~~~~------~~~~~ 210 (394)
T COG4886 141 NLKELDLSDNKIESLP-SPLR--NLPNLKNLDLSFNDLSDLPKL-LSNLSNLNNLDLSGNKISDLPPEI------ELLSA 210 (394)
T ss_pred hcccccccccchhhhh-hhhh--ccccccccccCCchhhhhhhh-hhhhhhhhheeccCCccccCchhh------hhhhh
Confidence 8999999999999873 3355 899999999999999998852 237899999999999887775521 23556
Q ss_pred cceeEecccccccccccccCcccccCCCccEEEeccCccccccccCccccCCccEEEeccCcCccccCCcccccCCCCcc
Q 022501 88 IKSLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCNNLINLVPSSASFENLTTLEVSYCQRLKNLVSSSTAKSLVCLM 167 (296)
Q Consensus 88 L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~ 167 (296)
|+++.+++.+.+..+ .. ...+..+..+.+.+ ..+..++.....++.++.|++++ +.++++.. ...+.+++
T Consensus 211 L~~l~~~~N~~~~~~-~~----~~~~~~l~~l~l~~-n~~~~~~~~~~~l~~l~~L~~s~-n~i~~i~~---~~~~~~l~ 280 (394)
T COG4886 211 LEELDLSNNSIIELL-SS----LSNLKNLSGLELSN-NKLEDLPESIGNLSNLETLDLSN-NQISSISS---LGSLTNLR 280 (394)
T ss_pred hhhhhhcCCcceecc-hh----hhhcccccccccCC-ceeeeccchhccccccceecccc-cccccccc---ccccCccC
Confidence 888888876533332 22 55566777777544 34555556667788899999986 45666542 57788999
Q ss_pred EEEEeCcccccee
Q 022501 168 KLRIDGCKLMTEI 180 (296)
Q Consensus 168 ~L~l~~~~~~~~~ 180 (296)
.|+++++......
T Consensus 281 ~L~~s~n~~~~~~ 293 (394)
T COG4886 281 ELDLSGNSLSNAL 293 (394)
T ss_pred EEeccCccccccc
Confidence 9999887654433
No 41
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.76 E-value=3.6e-05 Score=45.65 Aligned_cols=38 Identities=34% Similarity=0.484 Sum_probs=17.0
Q ss_pred cceEEEeeccCccccccCCCCCCcCCCccEEEeccCCCCcc
Q 022501 8 NLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSDNF 48 (296)
Q Consensus 8 ~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 48 (296)
+|++|++++|+++++++ .+. .+++|+.|++++|.+..+
T Consensus 2 ~L~~L~l~~N~i~~l~~-~l~--~l~~L~~L~l~~N~i~~i 39 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPP-ELS--NLPNLETLNLSNNPISDI 39 (44)
T ss_dssp T-SEEEETSSS-SSHGG-HGT--TCTTSSEEEETSSCCSBE
T ss_pred cceEEEccCCCCcccCc-hHh--CCCCCCEEEecCCCCCCC
Confidence 45555555555555432 233 455555555555544433
No 42
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.73 E-value=6e-06 Score=68.70 Aligned_cols=83 Identities=22% Similarity=0.224 Sum_probs=41.4
Q ss_pred CCCCccEEEEeCccccceecccccccccccccCCccceeeccCCcCcceecCCCccccCCCccEEeeccCCccccccCC-
Q 022501 162 SLVCLMKLRIDGCKLMTEIISSEGDVEEDEIVFSRLKWLSLECLDSLTSFCSGNCTFKFPSLEDLFVIDCPKMMIFSFG- 240 (296)
Q Consensus 162 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~L~~L~l~~c~~l~~~~~~- 240 (296)
-||++..+.+..|+.-. ... +.....+|.+--|.+.. .++.++..-.....|++|..|++.+.|-...+-.+
T Consensus 197 ~Fpnv~sv~v~e~PlK~-~s~-----ek~se~~p~~~~LnL~~-~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~e 269 (418)
T KOG2982|consen 197 IFPNVNSVFVCEGPLKT-ESS-----EKGSEPFPSLSCLNLGA-NNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGE 269 (418)
T ss_pred hcccchheeeecCcccc-hhh-----cccCCCCCcchhhhhcc-cccccHHHHHHHcCCchhheeeccCCcccccccCCc
Confidence 35556666555554211 111 11233355555555543 23444333223457888888888887766544332
Q ss_pred -----cccCCCcceEE
Q 022501 241 -----VLSTPRLREVR 251 (296)
Q Consensus 241 -----~~~~~~L~~l~ 251 (296)
+..+++++-|+
T Consensus 270 rr~llIaRL~~v~vLN 285 (418)
T KOG2982|consen 270 RRFLLIARLTKVQVLN 285 (418)
T ss_pred ceEEEEeeccceEEec
Confidence 23455555553
No 43
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.73 E-value=1.8e-06 Score=79.23 Aligned_cols=142 Identities=22% Similarity=0.172 Sum_probs=87.4
Q ss_pred cCCCccEEEeccCCCCcc--ChHHHhcCCcccEEEEecc-ccceEeecCccccccCCccccceeEecccccccccccccC
Q 022501 31 LFQNLKSLEIVSDKSDNF--SIGFLQRFHNVERLKLRNS-SYKEIFSNGEVEKQAGMLTQIKSLKLWELSNLLHIWEQCY 107 (296)
Q Consensus 31 ~l~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~ 107 (296)
.+++|+.|.+.++....- -......+++|++|++.+| ......+. ........+++|+.|++..+..+.+......
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l 264 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPL-LLLLLLSICRKLKSLDLSGCGLVTDIGLSAL 264 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchh-HhhhhhhhcCCcCccchhhhhccCchhHHHH
Confidence 478888888888766532 2245667889999998873 11111110 0111334478888888888776554322211
Q ss_pred cccccCCCccEEEeccCccccc--cccCccccCCccEEEeccCcCccccCCcccccCCCCccEEEEeCcc
Q 022501 108 KLDSVFQNLETLEIWWCNNLIN--LVPSSASFENLTTLEVSYCQRLKNLVSSSTAKSLVCLMKLRIDGCK 175 (296)
Q Consensus 108 ~~~~~~~~L~~L~l~~~~~l~~--~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~ 175 (296)
...+++|+.|.+.+|..+++ +......++.|++|++++|..+++........++++++.|.+..+.
T Consensus 265 --~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~ 332 (482)
T KOG1947|consen 265 --ASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLN 332 (482)
T ss_pred --HhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcC
Confidence 22377899998888876433 2223456788999999988887654333345557777776655543
No 44
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.72 E-value=3.3e-05 Score=45.80 Aligned_cols=41 Identities=24% Similarity=0.423 Sum_probs=34.1
Q ss_pred CCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEee
Q 022501 33 QNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFS 74 (296)
Q Consensus 33 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 74 (296)
++|++|++++|.+..+|+ .+++|++|++|++++|.++.+.+
T Consensus 1 ~~L~~L~l~~N~i~~l~~-~l~~l~~L~~L~l~~N~i~~i~~ 41 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPP-ELSNLPNLETLNLSNNPISDISP 41 (44)
T ss_dssp TT-SEEEETSSS-SSHGG-HGTTCTTSSEEEETSSCCSBEGG
T ss_pred CcceEEEccCCCCcccCc-hHhCCCCCCEEEecCCCCCCCcC
Confidence 589999999999999986 57899999999999998876643
No 45
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=97.71 E-value=1.8e-06 Score=77.46 Aligned_cols=97 Identities=20% Similarity=0.187 Sum_probs=41.6
Q ss_pred EEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCccccccCCccccceeEecccccccccccccCcccccCCCc
Q 022501 37 SLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGMLTQIKSLKLWELSNLLHIWEQCYKLDSVFQNL 116 (296)
Q Consensus 37 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L 116 (296)
..|++.|...++|. .+..+..|+.+.++.|.+.-+ ...+..+..|++|+++. ..+..++.. +..+| |
T Consensus 79 ~aDlsrNR~~elp~-~~~~f~~Le~liLy~n~~r~i------p~~i~~L~~lt~l~ls~-NqlS~lp~~----lC~lp-L 145 (722)
T KOG0532|consen 79 FADLSRNRFSELPE-EACAFVSLESLILYHNCIRTI------PEAICNLEALTFLDLSS-NQLSHLPDG----LCDLP-L 145 (722)
T ss_pred hhhccccccccCch-HHHHHHHHHHHHHHhccceec------chhhhhhhHHHHhhhcc-chhhcCChh----hhcCc-c
Confidence 34444454445543 223344555555544433222 11223344444444442 223333333 22222 5
Q ss_pred cEEEeccCccccccccCccccCCccEEEecc
Q 022501 117 ETLEIWWCNNLINLVPSSASFENLTTLEVSY 147 (296)
Q Consensus 117 ~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~ 147 (296)
+.|.+++ ++++.+|..+...++|.+|+.+.
T Consensus 146 kvli~sN-Nkl~~lp~~ig~~~tl~~ld~s~ 175 (722)
T KOG0532|consen 146 KVLIVSN-NKLTSLPEEIGLLPTLAHLDVSK 175 (722)
T ss_pred eeEEEec-CccccCCcccccchhHHHhhhhh
Confidence 5555544 34555555444445555555543
No 46
>PLN03150 hypothetical protein; Provisional
Probab=97.63 E-value=8.8e-05 Score=70.32 Aligned_cols=110 Identities=12% Similarity=0.057 Sum_probs=77.6
Q ss_pred CccEEEeccCCCC-ccChHHHhcCCcccEEEEeccccceEeecCccccccCCccccceeEecccccccccccccCccccc
Q 022501 34 NLKSLEIVSDKSD-NFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGMLTQIKSLKLWELSNLLHIWEQCYKLDSV 112 (296)
Q Consensus 34 ~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~ 112 (296)
.++.|++.++... .+| ..+..+++|+.|++++|.+.+..+ ...+.+++|+.|+++++.-...++.. +..
T Consensus 419 ~v~~L~L~~n~L~g~ip-~~i~~L~~L~~L~Ls~N~l~g~iP-----~~~~~l~~L~~LdLs~N~lsg~iP~~----l~~ 488 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIP-NDISKLRHLQSINLSGNSIRGNIP-----PSLGSITSLEVLDLSYNSFNGSIPES----LGQ 488 (623)
T ss_pred EEEEEECCCCCccccCC-HHHhCCCCCCEEECCCCcccCcCC-----hHHhCCCCCCEEECCCCCCCCCCchH----Hhc
Confidence 4788888887776 444 467788999999999887765433 22356889999999887655455554 677
Q ss_pred CCCccEEEeccCccccccccCccc-cCCccEEEeccCcCccc
Q 022501 113 FQNLETLEIWWCNNLINLVPSSAS-FENLTTLEVSYCQRLKN 153 (296)
Q Consensus 113 ~~~L~~L~l~~~~~l~~~~~~~~~-l~~L~~L~l~~c~~l~~ 153 (296)
+++|+.|+++++...+.+|..+.. +.++..+++.++..+..
T Consensus 489 L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~ 530 (623)
T PLN03150 489 LTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCG 530 (623)
T ss_pred CCCCCEEECcCCcccccCChHHhhccccCceEEecCCccccC
Confidence 889999999987766677765433 34566778877665543
No 47
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.62 E-value=4.6e-06 Score=76.45 Aligned_cols=141 Identities=20% Similarity=0.146 Sum_probs=78.4
Q ss_pred CccccceeEecccccccccccccCcccccCCCccEEEeccC-ccccccc----cCccccCCccEEEeccCcCccccCCcc
Q 022501 84 MLTQIKSLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWC-NNLINLV----PSSASFENLTTLEVSYCQRLKNLVSSS 158 (296)
Q Consensus 84 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~-~~l~~~~----~~~~~l~~L~~L~l~~c~~l~~~~~~~ 158 (296)
.++.|+.|.+.+|..+..... .......+.|++|++++| ......+ .....+++|+.|+++.|..+++.....
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~ 263 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSL--DALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSA 263 (482)
T ss_pred hCchhhHhhhcccccCChhhH--HHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHH
Confidence 367777777777766654210 011455677888888763 2222211 123345777888888777666655444
Q ss_pred cccCCCCccEEEEeCccccceecccccccccccccCCccceeeccCCcCcceecCCCccccCCCccEEeeccC
Q 022501 159 TAKSLVCLMKLRIDGCKLMTEIISSEGDVEEDEIVFSRLKWLSLECLDSLTSFCSGNCTFKFPSLEDLFVIDC 231 (296)
Q Consensus 159 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~L~~L~l~~c 231 (296)
.+..+++|++|.+.+|..+++ .+.......+++|++|++++|..+++-........+++++.|.+..+
T Consensus 264 l~~~c~~L~~L~l~~c~~lt~-----~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~ 331 (482)
T KOG1947|consen 264 LASRCPNLETLSLSNCSNLTD-----EGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSL 331 (482)
T ss_pred HHhhCCCcceEccCCCCccch-----hHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhc
Confidence 445577788888777765321 11111233477788888887776644322222334555555444433
No 48
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=97.62 E-value=1.4e-05 Score=66.69 Aligned_cols=206 Identities=17% Similarity=0.156 Sum_probs=121.0
Q ss_pred cccceEEEeeccC--c--cccccC--CCCCCcCCCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEe---ec-
Q 022501 6 IANLEELKLSGKD--I--TMICHD--HLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIF---SN- 75 (296)
Q Consensus 6 l~~L~~L~L~~~~--~--~~~~~~--~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~---~~- 75 (296)
+..|.+|..++.+ + +.+.+. .|....|++|+.+.++.|....+-. ....-|.|+++.+....+.... |.
T Consensus 181 ~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~~~~i~~-~~~~kptl~t~~v~~s~~~~~~~l~pe~ 259 (490)
T KOG1259|consen 181 CTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALSTENIVD-IELLKPTLQTICVHNTTIQDVPSLLPET 259 (490)
T ss_pred hhheeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccchhheec-eeecCchhheeeeecccccccccccchh
Confidence 4577888877632 1 222211 1233468899999998876554431 2223467888887654322221 10
Q ss_pred -------------Cc-cccccCCccccceeEecccccccccccccCcccccCCCccEEEeccCccccccccCccccCCcc
Q 022501 76 -------------GE-VEKQAGMLTQIKSLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCNNLINLVPSSASFENLT 141 (296)
Q Consensus 76 -------------~~-~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~ 141 (296)
.| .-.....-..|+.+++++.. +..+... ..-.|.++.|+++.+ .+..+.. +..+++|+
T Consensus 260 ~~~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS~N~-I~~iDES----vKL~Pkir~L~lS~N-~i~~v~n-La~L~~L~ 332 (490)
T KOG1259|consen 260 ILADPSGSEPSTSNGSALVSADTWQELTELDLSGNL-ITQIDES----VKLAPKLRRLILSQN-RIRTVQN-LAELPQLQ 332 (490)
T ss_pred hhcCccCCCCCccCCceEEecchHhhhhhccccccc-hhhhhhh----hhhccceeEEecccc-ceeeehh-hhhcccce
Confidence 00 01111123456777777532 3334333 555788999999875 4444433 55688999
Q ss_pred EEEeccCcCccccCCcccccCCCCccEEEEeCccccceecccccccccccccCCccceeeccCCcCcceecCCCccccCC
Q 022501 142 TLEVSYCQRLKNLVSSSTAKSLVCLMKLRIDGCKLMTEIISSEGDVEEDEIVFSRLKWLSLECLDSLTSFCSGNCTFKFP 221 (296)
Q Consensus 142 ~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~ 221 (296)
.|+++++ .++.+. .|-..+.+.++|.+.++. ++++.. .+. +=+|..|++.+. +++.+..-...+++|
T Consensus 333 ~LDLS~N-~Ls~~~--Gwh~KLGNIKtL~La~N~-iE~LSG-L~K-------LYSLvnLDl~~N-~Ie~ldeV~~IG~LP 399 (490)
T KOG1259|consen 333 LLDLSGN-LLAECV--GWHLKLGNIKTLKLAQNK-IETLSG-LRK-------LYSLVNLDLSSN-QIEELDEVNHIGNLP 399 (490)
T ss_pred Eeecccc-hhHhhh--hhHhhhcCEeeeehhhhh-Hhhhhh-hHh-------hhhheecccccc-chhhHHHhccccccc
Confidence 9999874 344433 245667888999888853 333332 122 567888888874 355544333357899
Q ss_pred CccEEeeccCC
Q 022501 222 SLEDLFVIDCP 232 (296)
Q Consensus 222 ~L~~L~l~~c~ 232 (296)
.|+.+.+.++|
T Consensus 400 CLE~l~L~~NP 410 (490)
T KOG1259|consen 400 CLETLRLTGNP 410 (490)
T ss_pred HHHHHhhcCCC
Confidence 99999999977
No 49
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=97.61 E-value=8.3e-06 Score=68.03 Aligned_cols=128 Identities=20% Similarity=0.252 Sum_probs=55.6
Q ss_pred CCCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCccccccCCccccceeEecccccccccccccCcccc
Q 022501 32 FQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGMLTQIKSLKLWELSNLLHIWEQCYKLDS 111 (296)
Q Consensus 32 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~ 111 (296)
...|..+|+++|.+..+.. ..+-.|.++.|+++.|++..+-.+.. +++|+.|++++.. +..+..+ ..
T Consensus 283 Wq~LtelDLS~N~I~~iDE-SvKL~Pkir~L~lS~N~i~~v~nLa~-------L~~L~~LDLS~N~-Ls~~~Gw----h~ 349 (490)
T KOG1259|consen 283 WQELTELDLSGNLITQIDE-SVKLAPKLRRLILSQNRIRTVQNLAE-------LPQLQLLDLSGNL-LAECVGW----HL 349 (490)
T ss_pred Hhhhhhccccccchhhhhh-hhhhccceeEEeccccceeeehhhhh-------cccceEeecccch-hHhhhhh----Hh
Confidence 3455555555555555443 23444555555555554444422221 5555555555421 2222111 12
Q ss_pred cCCCccEEEeccCccccccccCccccCCccEEEeccCcCccccCCcccccCCCCccEEEEeCcc
Q 022501 112 VFQNLETLEIWWCNNLINLVPSSASFENLTTLEVSYCQRLKNLVSSSTAKSLVCLMKLRIDGCK 175 (296)
Q Consensus 112 ~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~ 175 (296)
.+-+.++|.+.++ .++++. ++..+-+|..|+++++ ++..+.....++++|.|+.+.+.+++
T Consensus 350 KLGNIKtL~La~N-~iE~LS-GL~KLYSLvnLDl~~N-~Ie~ldeV~~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 350 KLGNIKTLKLAQN-KIETLS-GLRKLYSLVNLDLSSN-QIEELDEVNHIGNLPCLETLRLTGNP 410 (490)
T ss_pred hhcCEeeeehhhh-hHhhhh-hhHhhhhheecccccc-chhhHHHhcccccccHHHHHhhcCCC
Confidence 2334455555442 222211 2233344555555542 33333222334555555555555544
No 50
>PLN03150 hypothetical protein; Provisional
Probab=97.55 E-value=0.00018 Score=68.26 Aligned_cols=112 Identities=13% Similarity=0.093 Sum_probs=81.0
Q ss_pred cccEEEEeccccceEeecCccccccCCccccceeEecccccccccccccCcccccCCCccEEEeccCccccccccCcccc
Q 022501 58 NVERLKLRNSSYKEIFSNGEVEKQAGMLTQIKSLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCNNLINLVPSSASF 137 (296)
Q Consensus 58 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l 137 (296)
.++.|++.++.+.+..+ .....+++|+.|+++++.....++.. +..+++|+.|+++++...+.+|..+..+
T Consensus 419 ~v~~L~L~~n~L~g~ip-----~~i~~L~~L~~L~Ls~N~l~g~iP~~----~~~l~~L~~LdLs~N~lsg~iP~~l~~L 489 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIP-----NDISKLRHLQSINLSGNSIRGNIPPS----LGSITSLEVLDLSYNSFNGSIPESLGQL 489 (623)
T ss_pred EEEEEECCCCCccccCC-----HHHhCCCCCCEEECCCCcccCcCChH----HhCCCCCCEEECCCCCCCCCCchHHhcC
Confidence 47888888887765543 23456899999999987554455544 6788999999999987667788888889
Q ss_pred CCccEEEeccCcCccccCCcccccCCCCccEEEEeCccccce
Q 022501 138 ENLTTLEVSYCQRLKNLVSSSTAKSLVCLMKLRIDGCKLMTE 179 (296)
Q Consensus 138 ~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 179 (296)
++|+.|+++++.....++ ......+.++..+.+.++..+..
T Consensus 490 ~~L~~L~Ls~N~l~g~iP-~~l~~~~~~~~~l~~~~N~~lc~ 530 (623)
T PLN03150 490 TSLRILNLNGNSLSGRVP-AALGGRLLHRASFNFTDNAGLCG 530 (623)
T ss_pred CCCCEEECcCCcccccCC-hHHhhccccCceEEecCCccccC
Confidence 999999999875433433 22223345677888888776553
No 51
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=97.46 E-value=2.8e-06 Score=76.34 Aligned_cols=192 Identities=18% Similarity=0.149 Sum_probs=131.9
Q ss_pred eEEEeeccCccccccCCCCCCcCCCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCccccccCCccccc
Q 022501 10 EELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGMLTQIK 89 (296)
Q Consensus 10 ~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~ 89 (296)
...+++.|++..++ ..+. .|-.|+.+.++.|.+-.+|. .+.++..|..|+++.|.+..+.. .+. .--|+
T Consensus 78 ~~aDlsrNR~~elp-~~~~--~f~~Le~liLy~n~~r~ip~-~i~~L~~lt~l~ls~NqlS~lp~------~lC-~lpLk 146 (722)
T KOG0532|consen 78 VFADLSRNRFSELP-EEAC--AFVSLESLILYHNCIRTIPE-AICNLEALTFLDLSSNQLSHLPD------GLC-DLPLK 146 (722)
T ss_pred hhhhccccccccCc-hHHH--HHHHHHHHHHHhccceecch-hhhhhhHHHHhhhccchhhcCCh------hhh-cCcce
Confidence 34567777777773 4444 78889999998888888885 56788899999999887665533 111 11466
Q ss_pred eeEecccccccccccccCcccccCCCccEEEeccCccccccccCccccCCccEEEeccCcCccccCCcccccCCCCccEE
Q 022501 90 SLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCNNLINLVPSSASFENLTTLEVSYCQRLKNLVSSSTAKSLVCLMKL 169 (296)
Q Consensus 90 ~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L 169 (296)
.|-+++ .++..++.. +...+.|..|+.+.| .+..++.-..++.+|+.|.++.. .+.+++.. ...+ .|.+|
T Consensus 147 vli~sN-Nkl~~lp~~----ig~~~tl~~ld~s~n-ei~slpsql~~l~slr~l~vrRn-~l~~lp~E--l~~L-pLi~l 216 (722)
T KOG0532|consen 147 VLIVSN-NKLTSLPEE----IGLLPTLAHLDVSKN-EIQSLPSQLGYLTSLRDLNVRRN-HLEDLPEE--LCSL-PLIRL 216 (722)
T ss_pred eEEEec-CccccCCcc----cccchhHHHhhhhhh-hhhhchHHhhhHHHHHHHHHhhh-hhhhCCHH--HhCC-ceeee
Confidence 666664 455666665 666778888888765 56778877788888998888764 45566533 2333 37777
Q ss_pred EEeCccccceecccccccccccccCCccceeeccCCcCcceecCCCc-cccCCCccEEeeccC
Q 022501 170 RIDGCKLMTEIISSEGDVEEDEIVFSRLKWLSLECLDSLTSFCSGNC-TFKFPSLEDLFVIDC 231 (296)
Q Consensus 170 ~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~-~~~~~~L~~L~l~~c 231 (296)
+++. +.+..++....+ +..|++|.+++.| |++-+...+ .+...-.|+|.+..|
T Consensus 217 DfSc-Nkis~iPv~fr~-------m~~Lq~l~LenNP-LqSPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 217 DFSC-NKISYLPVDFRK-------MRHLQVLQLENNP-LQSPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred eccc-Cceeecchhhhh-------hhhheeeeeccCC-CCCChHHHHhccceeeeeeecchhc
Confidence 7765 457777776555 8899999998877 666543221 235566788888888
No 52
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.27 E-value=0.00016 Score=68.92 Aligned_cols=136 Identities=20% Similarity=0.250 Sum_probs=63.2
Q ss_pred CCccEEEeccCCCCccChHHHhcCCcccEEEEeccccc-eEeecC-cc------c--cccCCccccceeEeccccccccc
Q 022501 33 QNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYK-EIFSNG-EV------E--KQAGMLTQIKSLKLWELSNLLHI 102 (296)
Q Consensus 33 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~~~~~~-~~------~--~~~~~~~~L~~L~l~~~~~l~~~ 102 (296)
-++.+.++.+.....-...+..... |++|.+.+.... ...-.. .+ . .....-.+|++|+++|...+..-
T Consensus 60 f~ltki~l~~~~~~~~~~~~l~~~~-L~sl~LGnl~~~k~~~~~~~~idi~~lL~~~Ln~~sr~nL~~LdI~G~~~~s~~ 138 (699)
T KOG3665|consen 60 FNLTKIDLKNVTLQHQTLEMLRKQD-LESLKLGNLDKIKQDYLDDATIDIISLLKDLLNEESRQNLQHLDISGSELFSNG 138 (699)
T ss_pred heeEEeeccceecchhHHHHHhhcc-ccccCCcchHhhhhhhhhhhhccHHHHHHHHHhHHHHHhhhhcCccccchhhcc
Confidence 3555566655544444444444444 777777754211 110000 00 0 00112346666666664333221
Q ss_pred ccccCcccccCCCccEEEeccCcccc-ccccCccccCCccEEEeccCcCccccCCcccccCCCCccEEEEeCcc
Q 022501 103 WEQCYKLDSVFQNLETLEIWWCNNLI-NLVPSSASFENLTTLEVSYCQRLKNLVSSSTAKSLVCLMKLRIDGCK 175 (296)
Q Consensus 103 ~~~~~~~~~~~~~L~~L~l~~~~~l~-~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~ 175 (296)
|.. .....+|+|++|.+.+-.... ++..-..+||+|..|+|+++ +++++ .+.+.+++|+.|.+.+..
T Consensus 139 W~~--kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~T-nI~nl---~GIS~LknLq~L~mrnLe 206 (699)
T KOG3665|consen 139 WPK--KIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGT-NISNL---SGISRLKNLQVLSMRNLE 206 (699)
T ss_pred HHH--HHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCC-CccCc---HHHhccccHHHHhccCCC
Confidence 111 113446667777766532211 11122345666777777663 34444 345566666666665543
No 53
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.16 E-value=0.00046 Score=54.56 Aligned_cols=90 Identities=19% Similarity=0.185 Sum_probs=67.5
Q ss_pred ccccceEEEeeccCccccccCCCCCCcCCCccEEEeccCCCCccCh-HHHhcCCcccEEEEeccccceEeecCccccccC
Q 022501 5 VIANLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSDNFSI-GFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAG 83 (296)
Q Consensus 5 ~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 83 (296)
.+++|.+|.+++|+|..+.+.... .+|+|+.|.+.+|.+..+.. .-+..+|.|++|.+-+|.+.+-.-.+. ..+-
T Consensus 62 ~l~rL~tLll~nNrIt~I~p~L~~--~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~--yvl~ 137 (233)
T KOG1644|consen 62 HLPRLHTLLLNNNRITRIDPDLDT--FLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRL--YVLY 137 (233)
T ss_pred CccccceEEecCCcceeeccchhh--hccccceEEecCcchhhhhhcchhccCCccceeeecCCchhcccCcee--EEEE
Confidence 378899999999999999877666 78999999999988874432 235679999999999986554432221 1223
Q ss_pred CccccceeEeccccc
Q 022501 84 MLTQIKSLKLWELSN 98 (296)
Q Consensus 84 ~~~~L~~L~l~~~~~ 98 (296)
.+|+|+.|++.+...
T Consensus 138 klp~l~~LDF~kVt~ 152 (233)
T KOG1644|consen 138 KLPSLRTLDFQKVTR 152 (233)
T ss_pred ecCcceEeehhhhhH
Confidence 589999999987543
No 54
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.13 E-value=0.00035 Score=58.45 Aligned_cols=80 Identities=15% Similarity=0.242 Sum_probs=52.4
Q ss_pred cccceEEEeeccCccccccCCCCCCcCCCccEEEeccCCCC----ccChHHHhcCCcccEEEEecccc--ceEeecCccc
Q 022501 6 IANLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSD----NFSIGFLQRFHNVERLKLRNSSY--KEIFSNGEVE 79 (296)
Q Consensus 6 l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~----~~~~~~~~~l~~L~~L~l~~~~~--~~~~~~~~~~ 79 (296)
.+.+++++|.+|.+++|....--...+|.|+.|+++.|+.. ..| ..+.+|++|.+.+..+ ... .
T Consensus 70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp----~p~~nl~~lVLNgT~L~w~~~------~ 139 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLP----LPLKNLRVLVLNGTGLSWTQS------T 139 (418)
T ss_pred hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCc----ccccceEEEEEcCCCCChhhh------h
Confidence 46788999999998888421111137899999999877654 333 3467899999988742 222 2
Q ss_pred cccCCccccceeEecc
Q 022501 80 KQAGMLTQIKSLKLWE 95 (296)
Q Consensus 80 ~~~~~~~~L~~L~l~~ 95 (296)
.....+|.++.|+++.
T Consensus 140 s~l~~lP~vtelHmS~ 155 (418)
T KOG2982|consen 140 SSLDDLPKVTELHMSD 155 (418)
T ss_pred hhhhcchhhhhhhhcc
Confidence 2223466677776664
No 55
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.09 E-value=3.9e-05 Score=65.19 Aligned_cols=200 Identities=16% Similarity=0.078 Sum_probs=113.9
Q ss_pred cCCCccEEEeccCCCC-ccCh---HHHhcCCcccEEEEeccccceEee--cCc------cccccCCccccceeEeccccc
Q 022501 31 LFQNLKSLEIVSDKSD-NFSI---GFLQRFHNVERLKLRNSSYKEIFS--NGE------VEKQAGMLTQIKSLKLWELSN 98 (296)
Q Consensus 31 ~l~~L~~L~l~~~~~~-~~~~---~~~~~l~~L~~L~l~~~~~~~~~~--~~~------~~~~~~~~~~L~~L~l~~~~~ 98 (296)
.+|+|++|+|++|-.+ ..+. ..++++..|++|++.+|.+...-. +.+ ...-..+-+.||.+..++..
T Consensus 90 ~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNr- 168 (382)
T KOG1909|consen 90 GCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNR- 168 (382)
T ss_pred cCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccc-
Confidence 5689999999999877 3332 356788999999999995422111 000 22234557788888877532
Q ss_pred ccccccccC-cccccCCCccEEEeccCccc----cccccCccccCCccEEEeccCcCccc--cCCcccccCCCCccEEEE
Q 022501 99 LLHIWEQCY-KLDSVFQNLETLEIWWCNNL----INLVPSSASFENLTTLEVSYCQRLKN--LVSSSTAKSLVCLMKLRI 171 (296)
Q Consensus 99 l~~~~~~~~-~~~~~~~~L~~L~l~~~~~l----~~~~~~~~~l~~L~~L~l~~c~~l~~--~~~~~~~~~l~~L~~L~l 171 (296)
+..-+.... ..+...+.|+.+.+..+..- +-+...+..+++|+.|+++++..-.. .........+++|+.+++
T Consensus 169 len~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l 248 (382)
T KOG1909|consen 169 LENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNL 248 (382)
T ss_pred cccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecc
Confidence 111110000 01444578888888764321 11222456689999999988643221 111113456788999999
Q ss_pred eCccccceecccccccccccccCCccceeeccCCcCccee--cCCCccccCCCccEEeeccCCc
Q 022501 172 DGCKLMTEIISSEGDVEEDEIVFSRLKWLSLECLDSLTSF--CSGNCTFKFPSLEDLFVIDCPK 233 (296)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l--~~~~~~~~~~~L~~L~l~~c~~ 233 (296)
++|..-..-..... .......|+|+.|.+.++..-.+- .........|.|+.|.+++|..
T Consensus 249 ~dcll~~~Ga~a~~--~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 249 GDCLLENEGAIAFV--DALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred cccccccccHHHHH--HHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 99964321100000 001123899999999886421110 0111122468899999999853
No 56
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.66 E-value=9.7e-05 Score=61.13 Aligned_cols=41 Identities=20% Similarity=0.245 Sum_probs=20.1
Q ss_pred CCCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEee
Q 022501 32 FQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFS 74 (296)
Q Consensus 32 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 74 (296)
+.+.++|+.++|.+.++. +..+|+.||.|.++-|+|+.+.+
T Consensus 18 l~~vkKLNcwg~~L~DIs--ic~kMp~lEVLsLSvNkIssL~p 58 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDIS--ICEKMPLLEVLSLSVNKISSLAP 58 (388)
T ss_pred HHHhhhhcccCCCccHHH--HHHhcccceeEEeeccccccchh
Confidence 344455555555544443 34455555555555554444433
No 57
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.52 E-value=5.9e-05 Score=62.39 Aligned_cols=105 Identities=21% Similarity=0.191 Sum_probs=71.3
Q ss_pred cccceEEEeeccCccccccCCCCCCcCCCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCccccccCCc
Q 022501 6 IANLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGML 85 (296)
Q Consensus 6 l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 85 (296)
+.+.++|+..+.++.++... . .+|-|+.|.|+-|.+.++.+ +..|++|++|++..|.|..+-.+.- ..++
T Consensus 18 l~~vkKLNcwg~~L~DIsic--~--kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~Y----Lknl 87 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDISIC--E--KMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEY----LKNL 87 (388)
T ss_pred HHHhhhhcccCCCccHHHHH--H--hcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHH----HhcC
Confidence 55678888888888887522 2 78999999999999988764 6789999999999886655533322 2348
Q ss_pred cccceeEeccccccccccccc-CcccccCCCccEEE
Q 022501 86 TQIKSLKLWELSNLLHIWEQC-YKLDSVFQNLETLE 120 (296)
Q Consensus 86 ~~L~~L~l~~~~~l~~~~~~~-~~~~~~~~~L~~L~ 120 (296)
|+|+.|.+...|.-..-+..- ...+..+|+|++|+
T Consensus 88 psLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 88 PSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred chhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 889888888766532211000 00144566677664
No 58
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.39 E-value=0.0011 Score=54.49 Aligned_cols=109 Identities=17% Similarity=0.217 Sum_probs=53.3
Q ss_pred cCCCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCccccccCCccccceeEecccccccccccccCccc
Q 022501 31 LFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGMLTQIKSLKLWELSNLLHIWEQCYKLD 110 (296)
Q Consensus 31 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~ 110 (296)
.+.+|+.|++.+....++. -+-.+++|++|.+++|.... ..++...+..+|+|++|++++... ..+ ....+.
T Consensus 41 ~~~~le~ls~~n~gltt~~--~~P~Lp~LkkL~lsdn~~~~---~~~l~vl~e~~P~l~~l~ls~Nki-~~l--stl~pl 112 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTTLT--NFPKLPKLKKLELSDNYRRV---SGGLEVLAEKAPNLKVLNLSGNKI-KDL--STLRPL 112 (260)
T ss_pred cccchhhhhhhccceeecc--cCCCcchhhhhcccCCcccc---cccceehhhhCCceeEEeecCCcc-ccc--cccchh
Confidence 4556666666554443221 01146677777777662211 122333344467777777765432 111 111114
Q ss_pred ccCCCccEEEeccCcccccccc----CccccCCccEEEeccC
Q 022501 111 SVFQNLETLEIWWCNNLINLVP----SSASFENLTTLEVSYC 148 (296)
Q Consensus 111 ~~~~~L~~L~l~~~~~l~~~~~----~~~~l~~L~~L~l~~c 148 (296)
..+++|..|.+..|.... +.. .+..+++|++|+-..+
T Consensus 113 ~~l~nL~~Ldl~n~~~~~-l~dyre~vf~ll~~L~~LD~~dv 153 (260)
T KOG2739|consen 113 KELENLKSLDLFNCSVTN-LDDYREKVFLLLPSLKYLDGCDV 153 (260)
T ss_pred hhhcchhhhhcccCCccc-cccHHHHHHHHhhhhcccccccc
Confidence 455667777777665433 111 1233566776655443
No 59
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=96.29 E-value=0.0001 Score=68.51 Aligned_cols=80 Identities=23% Similarity=0.246 Sum_probs=56.4
Q ss_pred cccccceEEEeeccCccccccCCCCCCcCCCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCccccccC
Q 022501 4 QVIANLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAG 83 (296)
Q Consensus 4 ~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 83 (296)
+.+|.|+.|+|++|++.+.. .+. .+++|++|||+.|....+|--.-..+. |+.|.+.+|.++.+..++
T Consensus 184 qll~ale~LnLshNk~~~v~--~Lr--~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~tL~gie------- 251 (1096)
T KOG1859|consen 184 QLLPALESLNLSHNKFTKVD--NLR--RLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTTLRGIE------- 251 (1096)
T ss_pred HHHHHhhhhccchhhhhhhH--HHH--hcccccccccccchhccccccchhhhh-heeeeecccHHHhhhhHH-------
Confidence 34789999999999988874 345 799999999988887766632222333 888999888655543322
Q ss_pred CccccceeEecc
Q 022501 84 MLTQIKSLKLWE 95 (296)
Q Consensus 84 ~~~~L~~L~l~~ 95 (296)
++.+|+.|++++
T Consensus 252 ~LksL~~LDlsy 263 (1096)
T KOG1859|consen 252 NLKSLYGLDLSY 263 (1096)
T ss_pred hhhhhhccchhH
Confidence 266667676664
No 60
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=96.10 E-value=0.0029 Score=57.15 Aligned_cols=105 Identities=23% Similarity=0.215 Sum_probs=65.5
Q ss_pred cccccceEEEeeccCccccccCCCCCCcCCCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCccccccC
Q 022501 4 QVIANLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAG 83 (296)
Q Consensus 4 ~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 83 (296)
..+.+|+.|++.+|.++.+.. .+. .+++|+.|++++|.+..+.. +..++.|+.|++.+|.+..+..+..
T Consensus 92 ~~~~~l~~l~l~~n~i~~i~~-~l~--~~~~L~~L~ls~N~I~~i~~--l~~l~~L~~L~l~~N~i~~~~~~~~------ 160 (414)
T KOG0531|consen 92 SKLKSLEALDLYDNKIEKIEN-LLS--SLVNLQVLDLSFNKITKLEG--LSTLTLLKELNLSGNLISDISGLES------ 160 (414)
T ss_pred ccccceeeeeccccchhhccc-chh--hhhcchheeccccccccccc--hhhccchhhheeccCcchhccCCcc------
Confidence 347788888888888887642 133 68888888888888876652 4567778888888887666544332
Q ss_pred CccccceeEecccccccccccccCcccccCCCccEEEeccC
Q 022501 84 MLTQIKSLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWC 124 (296)
Q Consensus 84 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~ 124 (296)
+.+|+.++++++... .+... . ...+..++.+.+.++
T Consensus 161 -l~~L~~l~l~~n~i~-~ie~~--~-~~~~~~l~~l~l~~n 196 (414)
T KOG0531|consen 161 -LKSLKLLDLSYNRIV-DIEND--E-LSELISLEELDLGGN 196 (414)
T ss_pred -chhhhcccCCcchhh-hhhhh--h-hhhccchHHHhccCC
Confidence 667777777654432 21110 0 133455666666553
No 61
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.99 E-value=0.0018 Score=53.12 Aligned_cols=110 Identities=20% Similarity=0.295 Sum_probs=67.2
Q ss_pred cccceEEEeeccCccccccCCCCCCcCCCccEEEeccC--CCC-ccChHHHhcCCcccEEEEeccccceEeecCcccccc
Q 022501 6 IANLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSD--KSD-NFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQA 82 (296)
Q Consensus 6 l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~--~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 82 (296)
+.+|+.|.+.+..++.+ ..++ .+|+||+|.++.| .+. .++. .+..+|+|++|.+++|+++-+-.+..+..
T Consensus 42 ~~~le~ls~~n~gltt~--~~~P--~Lp~LkkL~lsdn~~~~~~~l~v-l~e~~P~l~~l~ls~Nki~~lstl~pl~~-- 114 (260)
T KOG2739|consen 42 FVELELLSVINVGLTTL--TNFP--KLPKLKKLELSDNYRRVSGGLEV-LAEKAPNLKVLNLSGNKIKDLSTLRPLKE-- 114 (260)
T ss_pred ccchhhhhhhccceeec--ccCC--CcchhhhhcccCCccccccccee-hhhhCCceeEEeecCCccccccccchhhh--
Confidence 55666666665555543 3355 7899999999777 333 3333 34566999999999997765544444333
Q ss_pred CCccccceeEecccccccccccccCcccccCCCccEEEeccCc
Q 022501 83 GMLTQIKSLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCN 125 (296)
Q Consensus 83 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~ 125 (296)
+.+|..|.+.+|+... +..-....+..+++|+.|+-..+.
T Consensus 115 --l~nL~~Ldl~n~~~~~-l~dyre~vf~ll~~L~~LD~~dv~ 154 (260)
T KOG2739|consen 115 --LENLKSLDLFNCSVTN-LDDYREKVFLLLPSLKYLDGCDVD 154 (260)
T ss_pred --hcchhhhhcccCCccc-cccHHHHHHHHhhhhccccccccC
Confidence 7778888888876543 111111114456677766655443
No 62
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=95.81 E-value=0.002 Score=58.25 Aligned_cols=125 Identities=20% Similarity=0.286 Sum_probs=78.4
Q ss_pred cccceEEEeeccCccccccCCCCCCcCCCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCccccccCCc
Q 022501 6 IANLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGML 85 (296)
Q Consensus 6 l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 85 (296)
+..++.+.++.+.+..+. ..+. .+.+|..|++.+|.+..+.. .+..+++|++|++++|.|..+..+.. +
T Consensus 71 l~~l~~l~l~~n~i~~~~-~~l~--~~~~l~~l~l~~n~i~~i~~-~l~~~~~L~~L~ls~N~I~~i~~l~~-------l 139 (414)
T KOG0531|consen 71 LTSLKELNLRQNLIAKIL-NHLS--KLKSLEALDLYDNKIEKIEN-LLSSLVNLQVLDLSFNKITKLEGLST-------L 139 (414)
T ss_pred hHhHHhhccchhhhhhhh-cccc--cccceeeeeccccchhhccc-chhhhhcchheeccccccccccchhh-------c
Confidence 456666777777766632 2244 68888888888887776552 24678888888888887777655444 6
Q ss_pred cccceeEecccccccccccccCcccccCCCccEEEeccCccccccccC-ccccCCccEEEeccC
Q 022501 86 TQIKSLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCNNLINLVPS-SASFENLTTLEVSYC 148 (296)
Q Consensus 86 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~l~~L~~L~l~~c 148 (296)
+.|+.|.+.+... +.+.. +..++.|+.+++.++. +..+... ...+.+++.+.+.+.
T Consensus 140 ~~L~~L~l~~N~i-~~~~~-----~~~l~~L~~l~l~~n~-i~~ie~~~~~~~~~l~~l~l~~n 196 (414)
T KOG0531|consen 140 TLLKELNLSGNLI-SDISG-----LESLKSLKLLDLSYNR-IVDIENDELSELISLEELDLGGN 196 (414)
T ss_pred cchhhheeccCcc-hhccC-----CccchhhhcccCCcch-hhhhhhhhhhhccchHHHhccCC
Confidence 6688888877543 23221 3446677777777753 3333321 244566666666553
No 63
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.78 E-value=0.06 Score=39.67 Aligned_cols=101 Identities=17% Similarity=0.200 Sum_probs=39.1
Q ss_pred cCCCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCccccccCCccccceeEecccccccccccccCccc
Q 022501 31 LFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGMLTQIKSLKLWELSNLLHIWEQCYKLD 110 (296)
Q Consensus 31 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~ 110 (296)
.+.+|+.+.+.+ ....+....+..+++|+++.+.+. +..+.. . ....+++|+.+.+.+ .+..++... +
T Consensus 10 ~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~-~----~F~~~~~l~~i~~~~--~~~~i~~~~---F 77 (129)
T PF13306_consen 10 NCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGD-N----AFSNCKSLESITFPN--NLKSIGDNA---F 77 (129)
T ss_dssp T-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-T-T----TTTT-TT-EEEEETS--TT-EE-TTT---T
T ss_pred CCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccce-e----eeecccccccccccc--ccccccccc---c
Confidence 555666666653 233455555566666666666543 333211 1 112355566666643 333332221 3
Q ss_pred ccCCCccEEEeccCccccccccC-ccccCCccEEEec
Q 022501 111 SVFQNLETLEIWWCNNLINLVPS-SASFENLTTLEVS 146 (296)
Q Consensus 111 ~~~~~L~~L~l~~~~~l~~~~~~-~~~l~~L~~L~l~ 146 (296)
..+++|+.+.+.. .+..+... +.+. +|+.+.+.
T Consensus 78 ~~~~~l~~i~~~~--~~~~i~~~~f~~~-~l~~i~~~ 111 (129)
T PF13306_consen 78 SNCTNLKNIDIPS--NITEIGSSSFSNC-NLKEINIP 111 (129)
T ss_dssp TT-TTECEEEETT--T-BEEHTTTTTT--T--EEE-T
T ss_pred cccccccccccCc--cccEEchhhhcCC-CceEEEEC
Confidence 4456677776643 23334332 2333 66666654
No 64
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=95.77 E-value=0.0011 Score=56.64 Aligned_cols=140 Identities=14% Similarity=0.085 Sum_probs=89.5
Q ss_pred ccceEEEeeccCcccccc----CCCCCCcCCCccEEEeccCCCC----ccChHHHhcCCcccEEEEeccccceEeecCcc
Q 022501 7 ANLEELKLSGKDITMICH----DHLPKHLFQNLKSLEIVSDKSD----NFSIGFLQRFHNVERLKLRNSSYKEIFSNGEV 78 (296)
Q Consensus 7 ~~L~~L~L~~~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~----~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~ 78 (296)
++|+++....|.+++-+. ..+. ..|.|+.+.+..|.+. +.-...+..+++|+.|++.+|.+..--. ..+
T Consensus 157 ~~Lrv~i~~rNrlen~ga~~~A~~~~--~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs-~~L 233 (382)
T KOG1909|consen 157 PKLRVFICGRNRLENGGATALAEAFQ--SHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGS-VAL 233 (382)
T ss_pred cceEEEEeeccccccccHHHHHHHHH--hccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHH-HHH
Confidence 678999998888766421 2233 5689999999877665 2344567889999999999984432211 112
Q ss_pred ccccCCccccceeEecccccccccccccC-cc-cccCCCccEEEeccCccccc----cccCccccCCccEEEeccCcC
Q 022501 79 EKQAGMLTQIKSLKLWELSNLLHIWEQCY-KL-DSVFQNLETLEIWWCNNLIN----LVPSSASFENLTTLEVSYCQR 150 (296)
Q Consensus 79 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~~-~~-~~~~~~L~~L~l~~~~~l~~----~~~~~~~l~~L~~L~l~~c~~ 150 (296)
......+++|+.|.+++|-- +.-..... .. -...|+|+.+.+.+|....+ +......-|.|..|++++|..
T Consensus 234 akaL~s~~~L~El~l~dcll-~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 234 AKALSSWPHLRELNLGDCLL-ENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HHHhcccchheeeccccccc-ccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 33445588999999998842 21100000 00 23378899999998754432 222233368899999998764
No 65
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.12 E-value=0.16 Score=37.36 Aligned_cols=107 Identities=21% Similarity=0.220 Sum_probs=40.6
Q ss_pred hHHHhcCCcccEEEEeccccceEeecCccccccCCccccceeEecccccccccccccCcccccCCCccEEEeccCccccc
Q 022501 50 IGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGMLTQIKSLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCNNLIN 129 (296)
Q Consensus 50 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~ 129 (296)
...+.++++|+.+.+... ++.+.. . ....+++|+.+.+.+ .+..++... +..++.++.+.+.+ .+..
T Consensus 5 ~~~F~~~~~l~~i~~~~~-~~~I~~-~----~F~~~~~l~~i~~~~--~~~~i~~~~---F~~~~~l~~i~~~~--~~~~ 71 (129)
T PF13306_consen 5 NNAFYNCSNLESITFPNT-IKKIGE-N----AFSNCTSLKSINFPN--NLTSIGDNA---FSNCKSLESITFPN--NLKS 71 (129)
T ss_dssp TTTTTT-TT--EEEETST---EE-T-T----TTTT-TT-SEEEESS--TTSCE-TTT---TTT-TT-EEEEETS--TT-E
T ss_pred HHHHhCCCCCCEEEECCC-eeEeCh-h----hcccccccccccccc--cccccceee---eecccccccccccc--cccc
Confidence 344556666666666532 233211 1 112355666666654 244443322 34455566666643 2333
Q ss_pred cccC-ccccCCccEEEeccCcCccccCCcccccCCCCccEEEEeC
Q 022501 130 LVPS-SASFENLTTLEVSYCQRLKNLVSSSTAKSLVCLMKLRIDG 173 (296)
Q Consensus 130 ~~~~-~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~ 173 (296)
++.. +..+++|+.+.+.. .+..+... .+.+. .|+.+.+..
T Consensus 72 i~~~~F~~~~~l~~i~~~~--~~~~i~~~-~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 72 IGDNAFSNCTNLKNIDIPS--NITEIGSS-SFSNC-NLKEINIPS 112 (129)
T ss_dssp E-TTTTTT-TTECEEEETT--T-BEEHTT-TTTT--T--EEE-TT
T ss_pred cccccccccccccccccCc--cccEEchh-hhcCC-CceEEEECC
Confidence 3332 33356666666643 23332222 23443 566665543
No 66
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.95 E-value=0.0029 Score=50.08 Aligned_cols=65 Identities=18% Similarity=0.147 Sum_probs=39.2
Q ss_pred ccccceeEecccccccccccccCcccccCCCccEEEeccCcccccccc-CccccCCccEEEeccCcCc
Q 022501 85 LTQIKSLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCNNLINLVP-SSASFENLTTLEVSYCQRL 151 (296)
Q Consensus 85 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-~~~~l~~L~~L~l~~c~~l 151 (296)
+++++.|.+.+|..+.++...... +..++|+.|++++|+.+++-.. .+..+++|+.|.+.+.+.+
T Consensus 124 l~~i~~l~l~~ck~~dD~~L~~l~--~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l~~v 189 (221)
T KOG3864|consen 124 LRSIKSLSLANCKYFDDWCLERLG--GLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDLPYV 189 (221)
T ss_pred cchhhhheeccccchhhHHHHHhc--ccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCchhh
Confidence 666666777777666554333221 2456777777777777765443 3455677777777665443
No 67
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.91 E-value=0.0028 Score=50.15 Aligned_cols=40 Identities=25% Similarity=0.306 Sum_probs=21.1
Q ss_pred CCccceeeccCCcCcceecCCCccccCCCccEEeeccCCcc
Q 022501 194 FSRLKWLSLECLDSLTSFCSGNCTFKFPSLEDLFVIDCPKM 234 (296)
Q Consensus 194 ~~~L~~L~l~~~~~L~~l~~~~~~~~~~~L~~L~l~~c~~l 234 (296)
.++|+.|++++|+.+++--.. ....+++|+.|++++.+.+
T Consensus 150 ~~~L~~L~lsgC~rIT~~GL~-~L~~lknLr~L~l~~l~~v 189 (221)
T KOG3864|consen 150 APSLQDLDLSGCPRITDGGLA-CLLKLKNLRRLHLYDLPYV 189 (221)
T ss_pred ccchheeeccCCCeechhHHH-HHHHhhhhHHHHhcCchhh
Confidence 556666666666655553221 1235566666666555433
No 68
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=94.00 E-value=0.0057 Score=57.44 Aligned_cols=85 Identities=15% Similarity=0.088 Sum_probs=64.8
Q ss_pred ccccceEEEeeccCccccccCCCCCCcCCCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCccccccCC
Q 022501 5 VIANLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGM 84 (296)
Q Consensus 5 ~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 84 (296)
-+++|+.|+|+.|.+..++. +.+..+. |..|.+++|-..++- -++++++|+.|+++.|-+.+...+..+..
T Consensus 207 ~l~~LkhLDlsyN~L~~vp~--l~~~gc~-L~~L~lrnN~l~tL~--gie~LksL~~LDlsyNll~~hseL~pLws---- 277 (1096)
T KOG1859|consen 207 RLPKLKHLDLSYNCLRHVPQ--LSMVGCK-LQLLNLRNNALTTLR--GIENLKSLYGLDLSYNLLSEHSELEPLWS---- 277 (1096)
T ss_pred hcccccccccccchhccccc--cchhhhh-heeeeecccHHHhhh--hHHhhhhhhccchhHhhhhcchhhhHHHH----
Confidence 38999999999999988753 3332555 999999999877665 46889999999999886666655444333
Q ss_pred ccccceeEeccccc
Q 022501 85 LTQIKSLKLWELSN 98 (296)
Q Consensus 85 ~~~L~~L~l~~~~~ 98 (296)
+.+|+.|.+.|.|-
T Consensus 278 Ls~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 278 LSSLIVLWLEGNPL 291 (1096)
T ss_pred HHHHHHHhhcCCcc
Confidence 77888888888653
No 69
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=93.75 E-value=0.014 Score=43.49 Aligned_cols=58 Identities=17% Similarity=0.300 Sum_probs=30.0
Q ss_pred CCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCccccccCCccccceeEeccc
Q 022501 33 QNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGMLTQIKSLKLWEL 96 (296)
Q Consensus 33 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 96 (296)
..|+..++++|....+|..+...++.++.|++.+|.+.+++ .....++.||.|+++..
T Consensus 53 ~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvP------eE~Aam~aLr~lNl~~N 110 (177)
T KOG4579|consen 53 YELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVP------EELAAMPALRSLNLRFN 110 (177)
T ss_pred ceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhch------HHHhhhHHhhhcccccC
Confidence 34555555555555555555555555555555555444442 12233555555555543
No 70
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.47 E-value=0.064 Score=24.50 Aligned_cols=12 Identities=25% Similarity=0.672 Sum_probs=4.3
Q ss_pred CccEEEeccCCC
Q 022501 34 NLKSLEIVSDKS 45 (296)
Q Consensus 34 ~L~~L~l~~~~~ 45 (296)
+|+.|++++|..
T Consensus 2 ~L~~L~l~~n~L 13 (17)
T PF13504_consen 2 NLRTLDLSNNRL 13 (17)
T ss_dssp T-SEEEETSS--
T ss_pred ccCEEECCCCCC
Confidence 444444444443
No 71
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=93.12 E-value=0.028 Score=27.64 Aligned_cols=12 Identities=58% Similarity=0.847 Sum_probs=4.8
Q ss_pred ceEEEeeccCcc
Q 022501 9 LEELKLSGKDIT 20 (296)
Q Consensus 9 L~~L~L~~~~~~ 20 (296)
|++|++++|+++
T Consensus 2 L~~Ldls~n~l~ 13 (22)
T PF00560_consen 2 LEYLDLSGNNLT 13 (22)
T ss_dssp ESEEEETSSEES
T ss_pred ccEEECCCCcCE
Confidence 334444444333
No 72
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=91.53 E-value=0.18 Score=25.70 Aligned_cols=21 Identities=19% Similarity=0.461 Sum_probs=12.8
Q ss_pred CCccEEEeccCCCCccChHHH
Q 022501 33 QNLKSLEIVSDKSDNFSIGFL 53 (296)
Q Consensus 33 ~~L~~L~l~~~~~~~~~~~~~ 53 (296)
++|+.|++.+|.+..+|.+.+
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCCcCCHHHc
Confidence 456666666666666665544
No 73
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=91.53 E-value=0.18 Score=25.70 Aligned_cols=21 Identities=19% Similarity=0.461 Sum_probs=12.8
Q ss_pred CCccEEEeccCCCCccChHHH
Q 022501 33 QNLKSLEIVSDKSDNFSIGFL 53 (296)
Q Consensus 33 ~~L~~L~l~~~~~~~~~~~~~ 53 (296)
++|+.|++.+|.+..+|.+.+
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCCcCCHHHc
Confidence 456666666666666665544
No 74
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=91.04 E-value=0.019 Score=42.82 Aligned_cols=63 Identities=14% Similarity=0.210 Sum_probs=51.9
Q ss_pred ccceEEEeeccCccccccCCCCCCcCCCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceE
Q 022501 7 ANLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEI 72 (296)
Q Consensus 7 ~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 72 (296)
..|...+|++|.+++.+..... .||-+..|++.+|.+.++|.+ ++.++.|+.|++..|.+...
T Consensus 53 ~el~~i~ls~N~fk~fp~kft~--kf~t~t~lNl~~neisdvPeE-~Aam~aLr~lNl~~N~l~~~ 115 (177)
T KOG4579|consen 53 YELTKISLSDNGFKKFPKKFTI--KFPTATTLNLANNEISDVPEE-LAAMPALRSLNLRFNPLNAE 115 (177)
T ss_pred ceEEEEecccchhhhCCHHHhh--ccchhhhhhcchhhhhhchHH-HhhhHHhhhcccccCccccc
Confidence 4677789999999988544444 788999999999999999986 78899999999998865443
No 75
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=87.92 E-value=0.34 Score=24.70 Aligned_cols=17 Identities=24% Similarity=0.489 Sum_probs=11.9
Q ss_pred CCCccEEeeccCCcccc
Q 022501 220 FPSLEDLFVIDCPKMMI 236 (296)
Q Consensus 220 ~~~L~~L~l~~c~~l~~ 236 (296)
+++|+.|++++|+.+++
T Consensus 1 c~~L~~L~l~~C~~itD 17 (26)
T smart00367 1 CPNLRELDLSGCTNITD 17 (26)
T ss_pred CCCCCEeCCCCCCCcCH
Confidence 46677777777776654
No 76
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=84.79 E-value=0.27 Score=44.98 Aligned_cols=90 Identities=18% Similarity=0.208 Sum_probs=56.9
Q ss_pred ccccccceEEEeeccCccccccCCCCCCcCCCccEEEeccCCCCccChHHHhcC--CcccEEEEeccccceEeecCc--c
Q 022501 3 VQVIANLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSDNFSIGFLQRF--HNVERLKLRNSSYKEIFSNGE--V 78 (296)
Q Consensus 3 ~~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l--~~L~~L~l~~~~~~~~~~~~~--~ 78 (296)
+.-+|.+..+.|++|++-.+..-.--.+..|+|+.|+|++|........++.++ .-||+|.+.||.+-+-+..+. +
T Consensus 214 ~~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~tf~~~s~yv 293 (585)
T KOG3763|consen 214 EENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCTTFSDRSEYV 293 (585)
T ss_pred hcCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccccchhhhHHHH
Confidence 445788999999998866663222222367999999999984443333344433 468899999986555444322 2
Q ss_pred ccccCCccccceeE
Q 022501 79 EKQAGMLTQIKSLK 92 (296)
Q Consensus 79 ~~~~~~~~~L~~L~ 92 (296)
......+|+|..|+
T Consensus 294 ~~i~~~FPKL~~LD 307 (585)
T KOG3763|consen 294 SAIRELFPKLLRLD 307 (585)
T ss_pred HHHHHhcchheeec
Confidence 22333577776664
No 77
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=81.60 E-value=0.95 Score=23.23 Aligned_cols=17 Identities=53% Similarity=0.708 Sum_probs=12.2
Q ss_pred cccceEEEeeccCcccc
Q 022501 6 IANLEELKLSGKDITMI 22 (296)
Q Consensus 6 l~~L~~L~L~~~~~~~~ 22 (296)
+.+|++|++++|+|+.+
T Consensus 1 L~~L~~L~L~~NkI~~I 17 (26)
T smart00365 1 LTNLEELDLSQNKIKKI 17 (26)
T ss_pred CCccCEEECCCCcccee
Confidence 35777888887777665
No 78
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=80.27 E-value=0.62 Score=39.15 Aligned_cols=198 Identities=16% Similarity=0.060 Sum_probs=95.5
Q ss_pred cCCCccEEEeccCCCC-ccCh---HHHhcCCcccEEEEeccccceEeec------C--ccccccCCccccceeEeccccc
Q 022501 31 LFQNLKSLEIVSDKSD-NFSI---GFLQRFHNVERLKLRNSSYKEIFSN------G--EVEKQAGMLTQIKSLKLWELSN 98 (296)
Q Consensus 31 ~l~~L~~L~l~~~~~~-~~~~---~~~~~l~~L~~L~l~~~~~~~~~~~------~--~~~~~~~~~~~L~~L~l~~~~~ 98 (296)
.||+|+..++++|... ++|+ ..+.+-+.|+.|++.+|.+-.+-.- . +...-+..-|.|+....... .
T Consensus 90 kcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrN-R 168 (388)
T COG5238 90 KCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRN-R 168 (388)
T ss_pred cCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccc-h
Confidence 6899999999888776 5554 3566778899999998854222110 0 00111233556665554432 1
Q ss_pred ccccccccCc-ccccCCCccEEEeccCccc----ccc-ccCccccCCccEEEeccCcCccccC--CcccccCCCCccEEE
Q 022501 99 LLHIWEQCYK-LDSVFQNLETLEIWWCNNL----INL-VPSSASFENLTTLEVSYCQRLKNLV--SSSTAKSLVCLMKLR 170 (296)
Q Consensus 99 l~~~~~~~~~-~~~~~~~L~~L~l~~~~~l----~~~-~~~~~~l~~L~~L~l~~c~~l~~~~--~~~~~~~l~~L~~L~ 170 (296)
+..-+..-.. .+..=..|+.+.+..+..- +.+ ......+++|+.|++.++.....-. .......-+.|+.|.
T Consensus 169 lengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~ 248 (388)
T COG5238 169 LENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELR 248 (388)
T ss_pred hccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhcc
Confidence 1111000000 0111146777777653211 111 1134556788888888754211100 000122335688888
Q ss_pred EeCccccceeccc-ccccccccccCCccceeeccCCcC----cceecC-CCccccCCCccEEeeccC
Q 022501 171 IDGCKLMTEIISS-EGDVEEDEIVFSRLKWLSLECLDS----LTSFCS-GNCTFKFPSLEDLFVIDC 231 (296)
Q Consensus 171 l~~~~~~~~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~----L~~l~~-~~~~~~~~~L~~L~l~~c 231 (296)
+++|-....-... ... ..-..+|+|..|...+... +.++.. ...-..+|-|..|.++++
T Consensus 249 lnDClls~~G~~~v~~~--f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngN 313 (388)
T COG5238 249 LNDCLLSNEGVKSVLRR--FNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGN 313 (388)
T ss_pred ccchhhccccHHHHHHH--hhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccC
Confidence 8888543211000 000 0011267777777776432 111111 011235677777777764
No 79
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=74.63 E-value=1.4 Score=21.74 Aligned_cols=14 Identities=57% Similarity=0.736 Sum_probs=5.9
Q ss_pred ccceEEEeeccCcc
Q 022501 7 ANLEELKLSGKDIT 20 (296)
Q Consensus 7 ~~L~~L~L~~~~~~ 20 (296)
++|++|+|+++++.
T Consensus 2 ~~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 2 PNLETLDLSNNQIT 15 (24)
T ss_dssp TT-SEEE-TSSBEH
T ss_pred CCCCEEEccCCcCC
Confidence 44555555554444
No 80
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=66.91 E-value=1.5 Score=40.40 Aligned_cols=65 Identities=22% Similarity=0.145 Sum_probs=26.7
Q ss_pred cCCccEEEeccCcCccccCCcccccCCCCccEEEEeCccccceecccccccccccccCCccceee
Q 022501 137 FENLTTLEVSYCQRLKNLVSSSTAKSLVCLMKLRIDGCKLMTEIISSEGDVEEDEIVFSRLKWLS 201 (296)
Q Consensus 137 l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ 201 (296)
.|+|..|++++.....+.......-....|++|.+.+++..+.+.............||+|..||
T Consensus 243 apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~tf~~~s~yv~~i~~~FPKL~~LD 307 (585)
T KOG3763|consen 243 APKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCTTFSDRSEYVSAIRELFPKLLRLD 307 (585)
T ss_pred cchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccccchhhhHHHHHHHHHhcchheeec
Confidence 45666666665422111111111122334666666665544443322211112223455555554
No 81
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=51.10 E-value=9.3 Score=19.71 Aligned_cols=13 Identities=38% Similarity=0.590 Sum_probs=6.3
Q ss_pred cceEEEeeccCcc
Q 022501 8 NLEELKLSGKDIT 20 (296)
Q Consensus 8 ~L~~L~L~~~~~~ 20 (296)
+|++|+|++|.+.
T Consensus 3 ~L~~LdL~~N~i~ 15 (28)
T smart00368 3 SLRELDLSNNKLG 15 (28)
T ss_pred ccCEEECCCCCCC
Confidence 4455555554443
No 82
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=46.99 E-value=13 Score=19.07 Aligned_cols=16 Identities=19% Similarity=0.441 Sum_probs=9.2
Q ss_pred CccEEEeccCCCCccC
Q 022501 34 NLKSLEIVSDKSDNFS 49 (296)
Q Consensus 34 ~L~~L~l~~~~~~~~~ 49 (296)
+|+.|++++|....+|
T Consensus 3 ~L~~L~vs~N~Lt~LP 18 (26)
T smart00364 3 SLKELNVSNNQLTSLP 18 (26)
T ss_pred ccceeecCCCccccCc
Confidence 4556666666555555
No 83
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=46.45 E-value=28 Score=29.62 Aligned_cols=218 Identities=18% Similarity=0.074 Sum_probs=108.3
Q ss_pred cccceEEEeeccCccccccCCCCC--CcCCCccEEEeccCCCC----ccCh------HHHhcCCcccEEEEeccccceEe
Q 022501 6 IANLEELKLSGKDITMICHDHLPK--HLFQNLKSLEIVSDKSD----NFSI------GFLQRFHNVERLKLRNSSYKEIF 73 (296)
Q Consensus 6 l~~L~~L~L~~~~~~~~~~~~~~~--~~l~~L~~L~l~~~~~~----~~~~------~~~~~l~~L~~L~l~~~~~~~~~ 73 (296)
+..+.+++|++|.+..-...++.. ..-.+|+..++++-... .++. ..+-+||+|+..++++|-+..-+
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~ 108 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF 108 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence 567889999998765432222221 13456666666442222 2332 23567999999999988543222
Q ss_pred ecCccccccCCccccceeEecccccccccccccC----------cccccCCCccEEEeccCcccccccc-----CccccC
Q 022501 74 SNGEVEKQAGMLTQIKSLKLWELSNLLHIWEQCY----------KLDSVFQNLETLEIWWCNNLINLVP-----SSASFE 138 (296)
Q Consensus 74 ~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~----------~~~~~~~~L~~L~l~~~~~l~~~~~-----~~~~l~ 138 (296)
+ ..+...+.+-+.|.+|.+++|. +.-+..... .-...-|.|+......+ .+.+.+. .+..-.
T Consensus 109 ~-e~L~d~is~~t~l~HL~l~NnG-lGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrN-Rlengs~~~~a~~l~sh~ 185 (388)
T COG5238 109 P-EELGDLISSSTDLVHLKLNNNG-LGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRN-RLENGSKELSAALLESHE 185 (388)
T ss_pred c-hHHHHHHhcCCCceeEEeecCC-CCccchhHHHHHHHHHHHHhhhccCCCceEEEeccc-hhccCcHHHHHHHHHhhc
Confidence 2 2223334557889999998763 111110000 00344567777766543 3332221 111113
Q ss_pred CccEEEeccCcCcc-----ccCCcccccCCCCccEEEEeCccccceecccccccccccccCCccceeeccCCcC----cc
Q 022501 139 NLTTLEVSYCQRLK-----NLVSSSTAKSLVCLMKLRIDGCKLMTEIISSEGDVEEDEIVFSRLKWLSLECLDS----LT 209 (296)
Q Consensus 139 ~L~~L~l~~c~~l~-----~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~----L~ 209 (296)
+|+.+.+.++. +. .+. ...+..+.+|+.|++.++.....-..-. ..+.+.-+.|++|.+.+|-. ..
T Consensus 186 ~lk~vki~qNg-Irpegv~~L~-~~gl~y~~~LevLDlqDNtft~~gS~~L---a~al~~W~~lrEL~lnDClls~~G~~ 260 (388)
T COG5238 186 NLKEVKIQQNG-IRPEGVTMLA-FLGLFYSHSLEVLDLQDNTFTLEGSRYL---ADALCEWNLLRELRLNDCLLSNEGVK 260 (388)
T ss_pred CceeEEeeecC-cCcchhHHHH-HHHHHHhCcceeeeccccchhhhhHHHH---HHHhcccchhhhccccchhhccccHH
Confidence 67777776542 21 111 1123456788888888765321100000 00122245677887777631 11
Q ss_pred eecCCCccccCCCccEEeeccC
Q 022501 210 SFCSGNCTFKFPSLEDLFVIDC 231 (296)
Q Consensus 210 ~l~~~~~~~~~~~L~~L~l~~c 231 (296)
.+.........|+|..|.....
T Consensus 261 ~v~~~f~e~~~p~l~~L~~~Yn 282 (388)
T COG5238 261 SVLRRFNEKFVPNLMPLPGDYN 282 (388)
T ss_pred HHHHHhhhhcCCCccccccchh
Confidence 1111111234566666666543
Done!