Query 022501
Match_columns 296
No_of_seqs 148 out of 1501
Neff 10.0
Searched_HMMs 29240
Date Mon Mar 25 06:31:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022501.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022501hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fcg_A Uncharacterized protein 99.9 8E-22 2.7E-26 170.8 18.6 225 6-253 80-309 (328)
2 3zyj_A Leucine-rich repeat-con 99.8 3.2E-19 1.1E-23 160.6 21.6 232 6-264 63-296 (440)
3 3zyi_A Leucine-rich repeat-con 99.8 3.1E-19 1.1E-23 161.1 21.0 232 6-264 74-307 (452)
4 2id5_A Lingo-1, leucine rich r 99.8 4.1E-19 1.4E-23 161.3 17.1 234 7-256 56-307 (477)
5 2z66_A Variable lymphocyte rec 99.8 1.5E-18 5E-23 148.7 19.5 229 6-256 27-259 (306)
6 2id5_A Lingo-1, leucine rich r 99.8 1.4E-18 4.9E-23 157.8 20.2 231 6-256 79-331 (477)
7 4fcg_A Uncharacterized protein 99.8 6.9E-19 2.4E-23 152.3 17.1 204 6-230 103-310 (328)
8 3o53_A Protein LRIM1, AGAP0063 99.8 3E-19 1E-23 153.8 14.6 219 5-258 32-250 (317)
9 1xku_A Decorin; proteoglycan, 99.8 2.1E-18 7E-23 149.4 19.8 221 6-256 51-274 (330)
10 1ogq_A PGIP-2, polygalacturona 99.8 5.6E-19 1.9E-23 151.9 15.1 227 7-258 50-281 (313)
11 1ogq_A PGIP-2, polygalacturona 99.8 5.1E-19 1.7E-23 152.2 13.2 225 5-255 74-301 (313)
12 3rgz_A Protein brassinosteroid 99.8 1.1E-18 3.7E-23 167.4 16.9 157 6-175 393-549 (768)
13 3t6q_A CD180 antigen; protein- 99.8 3.3E-18 1.1E-22 159.8 19.8 159 6-174 277-435 (606)
14 3oja_A Leucine-rich immune mol 99.8 1.2E-18 4.2E-23 158.6 16.3 218 5-257 32-249 (487)
15 3o6n_A APL1; leucine-rich repe 99.8 2.7E-18 9.3E-23 152.0 18.1 84 6-96 68-151 (390)
16 2z80_A TOLL-like receptor 2, v 99.8 7E-19 2.4E-23 153.8 13.0 230 6-256 51-312 (353)
17 3oja_B Anopheles plasmodium-re 99.8 3.8E-18 1.3E-22 159.3 17.8 108 6-124 74-181 (597)
18 3zyj_A Leucine-rich repeat-con 99.8 3.6E-18 1.2E-22 153.6 17.0 205 5-232 86-290 (440)
19 3rgz_A Protein brassinosteroid 99.8 2.1E-18 7E-23 165.5 16.2 233 7-256 294-549 (768)
20 3v47_A TOLL-like receptor 5B a 99.8 9.3E-18 3.2E-22 151.3 19.6 112 133-256 294-406 (455)
21 3zyi_A Leucine-rich repeat-con 99.8 5.7E-18 1.9E-22 152.9 17.5 205 5-232 97-301 (452)
22 2ft3_A Biglycan; proteoglycan, 99.8 5.5E-18 1.9E-22 146.8 16.6 221 6-256 53-275 (332)
23 1ozn_A Reticulon 4 receptor; N 99.8 2.1E-17 7E-22 140.1 19.7 222 10-256 14-236 (285)
24 3t6q_A CD180 antigen; protein- 99.8 1.1E-17 3.9E-22 156.2 19.3 232 5-254 299-532 (606)
25 3v47_A TOLL-like receptor 5B a 99.8 1.5E-17 5.2E-22 150.0 17.9 64 193-258 321-384 (455)
26 1ozn_A Reticulon 4 receptor; N 99.8 1E-17 3.6E-22 141.9 14.8 207 6-235 31-239 (285)
27 3vq2_A TLR4, TOLL-like recepto 99.8 2E-17 6.9E-22 154.4 18.0 205 31-255 348-555 (606)
28 4fmz_A Internalin; leucine ric 99.8 3.1E-17 1.1E-21 142.8 17.9 56 194-255 242-297 (347)
29 3o6n_A APL1; leucine-rich repe 99.8 2.2E-17 7.4E-22 146.2 17.0 134 5-149 43-176 (390)
30 2z81_A CD282 antigen, TOLL-lik 99.8 7.9E-18 2.7E-22 155.4 14.4 110 6-124 49-158 (549)
31 4fmz_A Internalin; leucine ric 99.7 1.3E-17 4.5E-22 145.2 13.4 216 5-256 86-322 (347)
32 1xku_A Decorin; proteoglycan, 99.7 1.1E-16 3.9E-21 138.4 18.4 225 5-257 74-305 (330)
33 2xwt_C Thyrotropin receptor; s 99.7 1.7E-16 5.7E-21 131.0 17.4 198 33-253 31-234 (239)
34 3oja_B Anopheles plasmodium-re 99.7 7E-17 2.4E-21 150.7 16.6 133 6-149 50-182 (597)
35 3vq2_A TLR4, TOLL-like recepto 99.7 1.7E-16 5.9E-21 148.2 18.9 225 5-258 283-534 (606)
36 2z66_A Variable lymphocyte rec 99.7 2E-16 6.9E-21 135.3 16.9 222 10-257 10-235 (306)
37 1ziw_A TOLL-like receptor 3; i 99.7 8.7E-17 3E-21 152.2 15.3 156 7-174 25-181 (680)
38 1o6v_A Internalin A; bacterial 99.7 5.6E-16 1.9E-20 140.3 19.1 60 6-71 67-126 (466)
39 1p9a_G Platelet glycoprotein I 99.7 1.1E-15 3.8E-20 129.8 18.8 194 6-253 9-203 (290)
40 3j0a_A TOLL-like receptor 5; m 99.7 4.8E-16 1.6E-20 150.6 18.1 104 139-254 267-371 (844)
41 2ft3_A Biglycan; proteoglycan, 99.7 2.9E-16 9.8E-21 136.0 14.9 221 5-256 76-305 (332)
42 2z63_A TOLL-like receptor 4, v 99.7 5.6E-16 1.9E-20 143.5 17.8 227 6-256 281-529 (570)
43 2z7x_B TOLL-like receptor 1, v 99.7 5.6E-16 1.9E-20 142.1 17.7 221 7-256 247-479 (520)
44 2z62_A TOLL-like receptor 4, v 99.7 1E-15 3.6E-20 128.9 17.9 203 33-256 28-235 (276)
45 3bz5_A Internalin-J, INLJ; leu 99.7 1E-15 3.4E-20 138.2 18.1 140 6-174 41-180 (457)
46 3bz5_A Internalin-J, INLJ; leu 99.7 1.5E-16 5.2E-21 143.6 12.7 75 6-96 63-137 (457)
47 3o53_A Protein LRIM1, AGAP0063 99.7 2.3E-16 8E-21 135.7 13.3 215 9-257 12-226 (317)
48 2z80_A TOLL-like receptor 2, v 99.7 1.5E-16 5.1E-21 139.0 11.7 227 6-258 30-290 (353)
49 2ast_B S-phase kinase-associat 99.7 8.8E-18 3E-22 145.5 3.4 205 7-231 70-282 (336)
50 4eco_A Uncharacterized protein 99.7 1.6E-16 5.5E-21 149.3 12.1 136 110-258 326-470 (636)
51 4eco_A Uncharacterized protein 99.7 2.6E-16 8.8E-21 147.9 13.4 238 5-258 247-526 (636)
52 2z7x_B TOLL-like receptor 1, v 99.7 6.3E-16 2.2E-20 141.8 15.3 105 6-124 20-125 (520)
53 2z63_A TOLL-like receptor 4, v 99.7 2E-15 6.8E-20 139.8 18.5 209 6-238 324-535 (570)
54 1o6v_A Internalin A; bacterial 99.7 1.7E-15 5.7E-20 137.2 17.3 210 6-255 176-385 (466)
55 4ecn_A Leucine-rich repeat pro 99.7 3.5E-16 1.2E-20 150.7 13.6 80 7-97 548-630 (876)
56 3rfs_A Internalin B, repeat mo 99.7 4.2E-16 1.4E-20 131.2 12.4 152 6-175 40-192 (272)
57 4ay9_X Follicle-stimulating ho 99.7 2.9E-15 9.9E-20 130.7 18.0 222 6-253 29-254 (350)
58 3j0a_A TOLL-like receptor 5; m 99.7 2.8E-15 9.7E-20 145.2 19.6 134 6-148 23-158 (844)
59 2xwt_C Thyrotropin receptor; s 99.7 6E-16 2E-20 127.7 12.5 200 7-233 31-238 (239)
60 2o6q_A Variable lymphocyte rec 99.7 2.5E-15 8.6E-20 126.3 16.4 196 8-254 17-214 (270)
61 1h6u_A Internalin H; cell adhe 99.7 9.5E-16 3.3E-20 131.4 14.0 195 6-239 40-234 (308)
62 1ziw_A TOLL-like receptor 3; i 99.7 3.8E-15 1.3E-19 140.9 19.4 64 7-72 222-287 (680)
63 3oja_A Leucine-rich immune mol 99.7 2.8E-16 9.6E-21 143.0 10.6 212 5-252 56-269 (487)
64 3a79_B TLR6, VLRB.59, TOLL-lik 99.7 2.3E-15 8E-20 139.4 16.9 106 6-124 51-156 (562)
65 4ay9_X Follicle-stimulating ho 99.7 5.2E-15 1.8E-19 129.0 18.2 218 10-252 12-230 (350)
66 2z81_A CD282 antigen, TOLL-lik 99.7 9.3E-16 3.2E-20 141.5 13.7 182 6-206 25-207 (549)
67 2o6q_A Variable lymphocyte rec 99.7 2.5E-15 8.5E-20 126.3 15.0 180 6-206 36-216 (270)
68 4ecn_A Leucine-rich repeat pro 99.6 1.3E-15 4.6E-20 146.6 14.0 235 5-258 489-766 (876)
69 1wwl_A Monocyte differentiatio 99.6 1.2E-15 4.2E-20 130.9 12.0 227 9-255 65-306 (312)
70 3a79_B TLR6, VLRB.59, TOLL-lik 99.6 1.9E-14 6.6E-19 133.2 19.5 221 7-256 276-508 (562)
71 1h6u_A Internalin H; cell adhe 99.6 6.2E-15 2.1E-19 126.3 14.0 189 31-255 39-227 (308)
72 2ast_B S-phase kinase-associat 99.6 1.1E-16 3.7E-21 138.7 3.0 225 9-255 49-282 (336)
73 3rfs_A Internalin B, repeat mo 99.6 2E-15 6.7E-20 127.1 10.6 212 6-253 18-230 (272)
74 1wwl_A Monocyte differentiatio 99.6 4.9E-16 1.7E-20 133.4 6.4 206 35-256 65-285 (312)
75 3g06_A SSPH2 (leucine-rich rep 99.6 4.8E-14 1.6E-18 131.5 20.0 56 194-256 240-295 (622)
76 4glp_A Monocyte differentiatio 99.6 1.2E-14 4E-19 124.7 10.7 232 8-256 65-305 (310)
77 2z62_A TOLL-like receptor 4, v 99.5 2.9E-14 1E-18 120.0 11.5 204 7-233 28-236 (276)
78 4g8a_A TOLL-like receptor 4; l 99.5 2E-13 6.9E-18 127.6 17.6 64 191-257 490-554 (635)
79 1p9a_G Platelet glycoprotein I 99.5 8.9E-14 3E-18 118.1 13.4 176 6-206 30-206 (290)
80 4g8a_A TOLL-like receptor 4; l 99.5 7.6E-13 2.6E-17 123.7 21.0 238 6-265 327-585 (635)
81 4ezg_A Putative uncharacterize 99.5 7.4E-14 2.5E-18 111.7 12.1 129 31-175 42-170 (197)
82 1h6t_A Internalin B; cell adhe 99.5 7.3E-14 2.5E-18 118.7 11.5 58 6-69 45-102 (291)
83 3m19_A Variable lymphocyte rec 99.5 1.3E-13 4.4E-18 114.5 12.4 176 7-206 14-190 (251)
84 1jl5_A Outer protein YOPM; leu 99.5 6.9E-13 2.4E-17 119.5 17.8 117 5-148 151-267 (454)
85 3g06_A SSPH2 (leucine-rich rep 99.5 7.3E-13 2.5E-17 123.5 18.1 203 7-257 61-273 (622)
86 4glp_A Monocyte differentiatio 99.5 4.8E-14 1.6E-18 120.8 8.8 215 33-258 64-285 (310)
87 1jl5_A Outer protein YOPM; leu 99.5 2E-12 6.8E-17 116.6 19.7 194 33-256 131-368 (454)
88 3m19_A Variable lymphocyte rec 99.5 4.1E-13 1.4E-17 111.4 14.1 176 33-232 14-190 (251)
89 2ca6_A RAN GTPase-activating p 99.5 4.5E-15 1.5E-19 131.1 1.0 238 6-256 31-314 (386)
90 4ezg_A Putative uncharacterize 99.5 3.5E-13 1.2E-17 107.7 11.3 152 54-232 41-192 (197)
91 3ogk_B Coronatine-insensitive 99.4 3.2E-14 1.1E-18 132.3 4.6 65 5-71 162-234 (592)
92 2o6s_A Variable lymphocyte rec 99.4 3.8E-13 1.3E-17 108.4 9.3 166 10-206 10-176 (208)
93 3ogk_B Coronatine-insensitive 99.4 2E-14 6.7E-19 133.8 2.0 161 6-172 136-326 (592)
94 1m9s_A Internalin B; cell inva 99.4 5E-13 1.7E-17 124.3 11.3 167 6-206 42-208 (605)
95 3goz_A Leucine-rich repeat-con 99.4 2.2E-14 7.4E-19 125.7 0.6 243 6-257 21-296 (362)
96 1m9s_A Internalin B; cell inva 99.4 2.4E-13 8.4E-18 126.4 7.3 192 8-238 22-213 (605)
97 2p1m_B Transport inhibitor res 99.4 1.7E-14 5.7E-19 134.2 -1.3 164 5-174 64-245 (594)
98 2o6s_A Variable lymphocyte rec 99.4 3.4E-12 1.2E-16 102.8 12.0 175 37-242 11-186 (208)
99 1h6t_A Internalin B; cell adhe 99.4 2.5E-12 8.7E-17 109.1 11.8 147 5-176 66-212 (291)
100 2p1m_B Transport inhibitor res 99.4 1.1E-14 3.9E-19 135.3 -3.5 91 5-97 103-195 (594)
101 1xeu_A Internalin C; cellular 99.4 4.3E-12 1.5E-16 106.1 11.0 165 6-205 18-182 (263)
102 1z7x_W Ribonuclease inhibitor; 99.3 2E-14 6.9E-19 129.6 -3.9 15 6-20 27-41 (461)
103 1z7x_W Ribonuclease inhibitor; 99.3 1.9E-14 6.6E-19 129.8 -4.1 241 5-256 111-409 (461)
104 3e6j_A Variable lymphocyte rec 99.3 6.1E-12 2.1E-16 102.9 10.5 151 9-176 21-171 (229)
105 2v9t_B SLIT homolog 2 protein 99.3 6.6E-12 2.3E-16 102.1 10.4 151 10-176 14-164 (220)
106 2v70_A SLIT-2, SLIT homolog 2 99.3 2.3E-11 7.9E-16 98.8 12.5 151 10-176 14-165 (220)
107 3sb4_A Hypothetical leucine ri 99.3 2.4E-11 8.1E-16 104.9 13.1 221 6-251 48-327 (329)
108 2v9t_B SLIT homolog 2 protein 99.3 2.7E-11 9.3E-16 98.4 12.1 148 36-206 14-163 (220)
109 1xeu_A Internalin C; cellular 99.3 2.5E-12 8.6E-17 107.5 6.0 145 6-176 40-184 (263)
110 2v70_A SLIT-2, SLIT homolog 2 99.3 1.5E-11 5E-16 100.0 10.2 133 6-150 31-165 (220)
111 2xot_A Amphoterin-induced prot 99.3 9.2E-12 3.2E-16 108.9 9.6 130 34-174 40-173 (361)
112 3e6j_A Variable lymphocyte rec 99.3 2.6E-11 8.9E-16 99.1 11.7 150 34-206 20-170 (229)
113 2ca6_A RAN GTPase-activating p 99.3 6.8E-13 2.3E-17 117.1 1.8 218 5-234 58-316 (386)
114 3cvr_A Invasion plasmid antige 99.3 6E-11 2.1E-15 109.4 14.2 190 8-240 60-249 (571)
115 3goz_A Leucine-rich repeat-con 99.2 4.7E-13 1.6E-17 117.2 -1.1 218 6-232 49-295 (362)
116 2xot_A Amphoterin-induced prot 99.2 4.6E-11 1.6E-15 104.4 11.5 159 6-177 38-202 (361)
117 3cvr_A Invasion plasmid antige 99.2 1.1E-10 3.7E-15 107.7 14.3 176 34-257 60-242 (571)
118 2ell_A Acidic leucine-rich nuc 99.2 1.7E-11 5.7E-16 95.2 6.6 132 31-176 22-159 (168)
119 1dce_A Protein (RAB geranylger 99.2 1.5E-13 5E-18 127.1 -8.3 203 31-252 347-567 (567)
120 2je0_A Acidic leucine-rich nuc 99.2 1.5E-11 5.2E-16 93.4 4.0 62 5-71 15-78 (149)
121 2ell_A Acidic leucine-rich nuc 99.1 2.2E-10 7.5E-15 88.8 10.2 130 113-255 23-157 (168)
122 2je0_A Acidic leucine-rich nuc 99.0 2.7E-10 9.1E-15 86.5 6.3 128 113-253 16-148 (149)
123 1a9n_A U2A', U2A'; complex (nu 99.0 2.9E-10 1E-14 88.9 5.9 132 31-176 17-152 (176)
124 1w8a_A SLIT protein; signaling 99.0 1.3E-09 4.5E-14 86.4 9.7 125 10-148 11-136 (192)
125 1w8a_A SLIT protein; signaling 99.0 1.8E-09 6.2E-14 85.6 9.0 110 6-126 28-138 (192)
126 2o6r_A Variable lymphocyte rec 99.0 1.8E-09 6.2E-14 84.3 8.5 126 9-149 9-135 (177)
127 2o6r_A Variable lymphocyte rec 99.0 3.7E-09 1.3E-13 82.6 10.0 129 34-177 8-137 (177)
128 2wfh_A SLIT homolog 2 protein 98.9 5.5E-09 1.9E-13 82.9 10.7 122 10-147 13-135 (193)
129 4fdw_A Leucine rich hypothetic 98.9 8.8E-08 3E-12 84.7 19.3 219 8-255 136-355 (401)
130 2wfh_A SLIT homolog 2 protein 98.9 2.2E-09 7.4E-14 85.3 7.9 109 5-125 29-137 (193)
131 3sb4_A Hypothetical leucine ri 98.9 3.4E-09 1.2E-13 91.3 9.7 201 5-228 99-328 (329)
132 4fdw_A Leucine rich hypothetic 98.9 1.3E-07 4.6E-12 83.5 19.1 214 8-253 158-378 (401)
133 1a9n_A U2A', U2A'; complex (nu 98.9 1.4E-09 4.7E-14 85.0 5.1 130 6-149 18-151 (176)
134 1dce_A Protein (RAB geranylger 98.8 7.4E-09 2.5E-13 95.7 9.4 121 34-170 442-566 (567)
135 4b8c_D Glucose-repressible alc 98.8 5.8E-09 2E-13 99.2 7.1 105 31-148 222-326 (727)
136 1ds9_A Outer arm dynein; leuci 98.8 6.3E-11 2.2E-15 94.5 -6.1 110 52-176 43-152 (198)
137 3g39_A Variable lymphocyte rec 98.8 1E-08 3.6E-13 79.5 6.3 104 8-125 10-113 (170)
138 1ds9_A Outer arm dynein; leuci 98.8 4E-10 1.4E-14 89.9 -2.1 128 26-170 43-180 (198)
139 2r9u_A Variable lymphocyte rec 98.7 1.3E-08 4.4E-13 79.3 6.3 102 10-125 15-116 (174)
140 4b8c_D Glucose-repressible alc 98.7 1.5E-08 5E-13 96.5 6.7 153 7-178 173-330 (727)
141 3g39_A Variable lymphocyte rec 98.6 9.1E-08 3.1E-12 74.2 7.4 103 34-149 10-113 (170)
142 2r9u_A Variable lymphocyte rec 98.6 1.9E-07 6.4E-12 72.7 7.8 102 35-149 14-116 (174)
143 3un9_A NLR family member X1; l 98.4 3.2E-09 1.1E-13 93.0 -6.2 89 113-206 154-250 (372)
144 3e4g_A ATP synthase subunit S, 98.4 2.1E-07 7.2E-12 72.0 3.6 41 195-236 114-154 (176)
145 3e4g_A ATP synthase subunit S, 98.3 2.3E-07 8E-12 71.7 3.4 89 58-154 62-155 (176)
146 2ifg_A High affinity nerve gro 98.3 5.7E-07 1.9E-11 77.7 6.0 75 12-95 13-89 (347)
147 2ra8_A Uncharacterized protein 98.3 6E-07 2.1E-11 78.1 5.9 64 162-232 250-318 (362)
148 2ifg_A High affinity nerve gro 98.2 3E-06 1E-10 73.1 7.8 84 6-97 30-114 (347)
149 2ra8_A Uncharacterized protein 98.1 4.9E-06 1.7E-10 72.4 7.0 159 5-175 137-318 (362)
150 3un9_A NLR family member X1; l 98.1 2.7E-07 9.1E-12 80.8 -1.9 169 4-176 69-251 (372)
151 4fs7_A Uncharacterized protein 98.0 0.00019 6.4E-09 63.0 15.9 204 18-253 149-374 (394)
152 4gt6_A Cell surface protein; l 98.0 0.00033 1.1E-08 61.5 16.2 58 191-253 307-365 (394)
153 4fs7_A Uncharacterized protein 97.7 0.0013 4.4E-08 57.7 15.3 217 6-250 161-393 (394)
154 4gt6_A Cell surface protein; l 97.7 0.00091 3.1E-08 58.6 14.2 81 159-253 306-386 (394)
155 3rw6_A Nuclear RNA export fact 97.4 2.6E-05 8.8E-10 64.6 0.4 86 31-121 168-258 (267)
156 4h09_A Hypothetical leucine ri 97.4 0.023 7.7E-07 49.2 18.7 54 7-65 46-99 (379)
157 1io0_A Tropomodulin; LRR prote 97.0 0.0001 3.4E-09 57.7 -0.5 116 31-149 34-162 (185)
158 3rw6_A Nuclear RNA export fact 96.9 0.00037 1.2E-08 57.7 2.8 35 112-147 168-205 (267)
159 1io0_A Tropomodulin; LRR prote 96.6 0.00051 1.7E-08 53.6 0.8 120 52-175 31-162 (185)
160 3rfe_A Platelet glycoprotein I 95.7 0.012 4.2E-07 42.8 4.7 54 11-69 12-67 (130)
161 4h09_A Hypothetical leucine ri 95.6 0.03 1E-06 48.4 7.6 125 6-146 216-341 (379)
162 3rfe_A Platelet glycoprotein I 94.0 0.032 1.1E-06 40.5 2.8 38 7-46 31-68 (130)
163 1pgv_A TMD-1, tropomodulin TMD 74.8 0.89 3E-05 35.4 0.9 37 33-69 41-82 (197)
164 1pgv_A TMD-1, tropomodulin TMD 59.9 2.6 8.8E-05 32.8 0.8 90 6-96 40-136 (197)
165 2lz0_A Uncharacterized protein 45.0 18 0.00062 24.3 3.1 47 18-67 7-53 (100)
No 1
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.89 E-value=8e-22 Score=170.80 Aligned_cols=225 Identities=19% Similarity=0.234 Sum_probs=185.5
Q ss_pred cccceEEEeeccCccccccCCCCCCcCCCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCccccccCCc
Q 022501 6 IANLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGML 85 (296)
Q Consensus 6 l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 85 (296)
.+++++|++++++++.++ ..+. .+++|++|++++|.+..+|. .+.++++|++|++++|.+..+ +.....+
T Consensus 80 ~~~l~~L~L~~n~l~~lp-~~l~--~l~~L~~L~L~~n~l~~lp~-~~~~l~~L~~L~Ls~n~l~~l------p~~l~~l 149 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQFP-DQAF--RLSHLQHMTIDAAGLMELPD-TMQQFAGLETLTLARNPLRAL------PASIASL 149 (328)
T ss_dssp STTCCEEEEESSCCSSCC-SCGG--GGTTCSEEEEESSCCCCCCS-CGGGGTTCSEEEEESCCCCCC------CGGGGGC
T ss_pred ccceeEEEccCCCchhcC-hhhh--hCCCCCEEECCCCCccchhH-HHhccCCCCEEECCCCccccC------cHHHhcC
Confidence 578999999999999874 4556 79999999999999888875 568899999999999987744 2234669
Q ss_pred cccceeEecccccccccccccC-----cccccCCCccEEEeccCccccccccCccccCCccEEEeccCcCccccCCcccc
Q 022501 86 TQIKSLKLWELSNLLHIWEQCY-----KLDSVFQNLETLEIWWCNNLINLVPSSASFENLTTLEVSYCQRLKNLVSSSTA 160 (296)
Q Consensus 86 ~~L~~L~l~~~~~l~~~~~~~~-----~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~ 160 (296)
++|++|.+++|..+..++.... ..+..+++|+.|+++++ .+..+|..+..+++|++|++++|. +..++. .+
T Consensus 150 ~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n-~l~~lp~~l~~l~~L~~L~L~~N~-l~~l~~--~l 225 (328)
T 4fcg_A 150 NRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWT-GIRSLPASIANLQNLKSLKIRNSP-LSALGP--AI 225 (328)
T ss_dssp TTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEE-CCCCCCGGGGGCTTCCEEEEESSC-CCCCCG--GG
T ss_pred cCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCC-CcCcchHhhcCCCCCCEEEccCCC-CCcCch--hh
Confidence 9999999999888777765411 01234899999999996 566888888889999999999865 555543 46
Q ss_pred cCCCCccEEEEeCccccceecccccccccccccCCccceeeccCCcCcceecCCCccccCCCccEEeeccCCccccccCC
Q 022501 161 KSLVCLMKLRIDGCKLMTEIISSEGDVEEDEIVFSRLKWLSLECLDSLTSFCSGNCTFKFPSLEDLFVIDCPKMMIFSFG 240 (296)
Q Consensus 161 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~L~~L~l~~c~~l~~~~~~ 240 (296)
..+++|++|++++|...+.++...+. +++|++|++++|..+..++.. +..+++|++|++++|+.++.+|..
T Consensus 226 ~~l~~L~~L~Ls~n~~~~~~p~~~~~-------l~~L~~L~L~~n~~~~~~p~~--~~~l~~L~~L~L~~n~~~~~iP~~ 296 (328)
T 4fcg_A 226 HHLPKLEELDLRGCTALRNYPPIFGG-------RAPLKRLILKDCSNLLTLPLD--IHRLTQLEKLDLRGCVNLSRLPSL 296 (328)
T ss_dssp GGCTTCCEEECTTCTTCCBCCCCTTC-------CCCCCEEECTTCTTCCBCCTT--GGGCTTCCEEECTTCTTCCCCCGG
T ss_pred ccCCCCCEEECcCCcchhhhHHHhcC-------CCCCCEEECCCCCchhhcchh--hhcCCCCCEEeCCCCCchhhccHH
Confidence 78999999999999887776654444 999999999999888877663 578999999999999999999999
Q ss_pred cccCCCcceEEcc
Q 022501 241 VLSTPRLREVRKN 253 (296)
Q Consensus 241 ~~~~~~L~~l~l~ 253 (296)
+..+++|+.+++.
T Consensus 297 l~~L~~L~~l~l~ 309 (328)
T 4fcg_A 297 IAQLPANCIILVP 309 (328)
T ss_dssp GGGSCTTCEEECC
T ss_pred HhhccCceEEeCC
Confidence 9999999999886
No 2
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.84 E-value=3.2e-19 Score=160.55 Aligned_cols=232 Identities=16% Similarity=0.191 Sum_probs=182.3
Q ss_pred cccceEEEeeccCccccccCCCCCCcCCCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCccccccCCc
Q 022501 6 IANLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGML 85 (296)
Q Consensus 6 l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 85 (296)
.++++.|+|++|+++.+.+..+. .+++|+.|++++|.+..++...+.++++|++|++++|.+..+.+ .....+
T Consensus 63 ~~~l~~L~L~~n~i~~~~~~~~~--~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~-----~~~~~l 135 (440)
T 3zyj_A 63 STNTRLLNLHENQIQIIKVNSFK--HLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPN-----GAFVYL 135 (440)
T ss_dssp CTTCSEEECCSCCCCEECTTTTS--SCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCT-----TTSCSC
T ss_pred CCCCcEEEccCCcCCeeCHHHhh--CCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCH-----hHhhcc
Confidence 46799999999999998777787 89999999999999999888889999999999999998776533 123458
Q ss_pred cccceeEecccccccccccccCcccccCCCccEEEeccCcccccccc-CccccCCccEEEeccCcCccccCCcccccCCC
Q 022501 86 TQIKSLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCNNLINLVP-SSASFENLTTLEVSYCQRLKNLVSSSTAKSLV 164 (296)
Q Consensus 86 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~ 164 (296)
++|++|.++++. +..++... +..+++|++|++.++..+..++. .+..+++|++|+++++ .++.++ .+..++
T Consensus 136 ~~L~~L~L~~N~-i~~~~~~~---~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~---~~~~l~ 207 (440)
T 3zyj_A 136 SKLKELWLRNNP-IESIPSYA---FNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMC-NLREIP---NLTPLI 207 (440)
T ss_dssp SSCCEEECCSCC-CCEECTTT---TTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTS-CCSSCC---CCTTCS
T ss_pred ccCceeeCCCCc-ccccCHHH---hhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCC-cCcccc---ccCCCc
Confidence 999999999865 44444322 66789999999999888888776 4677899999999986 465554 367889
Q ss_pred CccEEEEeCccccceecccccccccccccCCccceeeccCCcCcceecCCCccccCCCccEEeeccCCccccccCCc-cc
Q 022501 165 CLMKLRIDGCKLMTEIISSEGDVEEDEIVFSRLKWLSLECLDSLTSFCSGNCTFKFPSLEDLFVIDCPKMMIFSFGV-LS 243 (296)
Q Consensus 165 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~-~~ 243 (296)
+|++|++++|. +..+... .+..+++|++|+++++. ++.+.... +..+++|+.|+++++ .++.+|... ..
T Consensus 208 ~L~~L~Ls~N~-l~~~~~~------~~~~l~~L~~L~L~~n~-l~~~~~~~-~~~l~~L~~L~L~~N-~l~~~~~~~~~~ 277 (440)
T 3zyj_A 208 KLDELDLSGNH-LSAIRPG------SFQGLMHLQKLWMIQSQ-IQVIERNA-FDNLQSLVEINLAHN-NLTLLPHDLFTP 277 (440)
T ss_dssp SCCEEECTTSC-CCEECTT------TTTTCTTCCEEECTTCC-CCEECTTS-STTCTTCCEEECTTS-CCCCCCTTTTSS
T ss_pred ccCEEECCCCc-cCccChh------hhccCccCCEEECCCCc-eeEEChhh-hcCCCCCCEEECCCC-CCCccChhHhcc
Confidence 99999999985 4443221 23448999999999864 77776644 568899999999997 577776553 57
Q ss_pred CCCcceEEcccCCcccccCCC
Q 022501 244 TPRLREVRKNWGLDKGCWEGN 264 (296)
Q Consensus 244 ~~~L~~l~l~~~~~~~~~~~~ 264 (296)
+++|+.|+++ +..|.++.+
T Consensus 278 l~~L~~L~L~--~Np~~CdC~ 296 (440)
T 3zyj_A 278 LHHLERIHLH--HNPWNCNCD 296 (440)
T ss_dssp CTTCCEEECC--SSCEECSST
T ss_pred ccCCCEEEcC--CCCccCCCC
Confidence 8999999998 444555544
No 3
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.83 E-value=3.1e-19 Score=161.13 Aligned_cols=232 Identities=18% Similarity=0.157 Sum_probs=182.1
Q ss_pred cccceEEEeeccCccccccCCCCCCcCCCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCccccccCCc
Q 022501 6 IANLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGML 85 (296)
Q Consensus 6 l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 85 (296)
.+++++|+|++|+++.+.+..+. .+++|+.|++++|.+..++...+.++++|++|++++|.+..+.+ .....+
T Consensus 74 ~~~l~~L~L~~n~i~~~~~~~~~--~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-----~~~~~l 146 (452)
T 3zyi_A 74 PSNTRYLNLMENNIQMIQADTFR--HLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPS-----GAFEYL 146 (452)
T ss_dssp CTTCSEEECCSSCCCEECTTTTT--TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCT-----TTSSSC
T ss_pred CCCccEEECcCCcCceECHHHcC--CCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccCh-----hhhccc
Confidence 46899999999999998777788 89999999999999998887888999999999999998776533 123458
Q ss_pred cccceeEecccccccccccccCcccccCCCccEEEeccCccccccccC-ccccCCccEEEeccCcCccccCCcccccCCC
Q 022501 86 TQIKSLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCNNLINLVPS-SASFENLTTLEVSYCQRLKNLVSSSTAKSLV 164 (296)
Q Consensus 86 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~ 164 (296)
++|++|.++++. +..++... +..+++|+.|++++|..++.++.. +..+++|++|+++++ .+..++ .+..++
T Consensus 147 ~~L~~L~L~~N~-l~~~~~~~---~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~---~~~~l~ 218 (452)
T 3zyi_A 147 SKLRELWLRNNP-IESIPSYA---FNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMC-NIKDMP---NLTPLV 218 (452)
T ss_dssp TTCCEEECCSCC-CCEECTTT---TTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTS-CCSSCC---CCTTCT
T ss_pred CCCCEEECCCCC-cceeCHhH---HhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCC-cccccc---cccccc
Confidence 999999999865 44554322 667899999999999888888764 677899999999986 455553 367889
Q ss_pred CccEEEEeCccccceecccccccccccccCCccceeeccCCcCcceecCCCccccCCCccEEeeccCCccccccCC-ccc
Q 022501 165 CLMKLRIDGCKLMTEIISSEGDVEEDEIVFSRLKWLSLECLDSLTSFCSGNCTFKFPSLEDLFVIDCPKMMIFSFG-VLS 243 (296)
Q Consensus 165 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~L~~L~l~~c~~l~~~~~~-~~~ 243 (296)
+|++|++++|......+.. +..+++|+.|+++++. ++.+.... +..+++|+.|+++++ .++.+|.. +..
T Consensus 219 ~L~~L~Ls~N~l~~~~~~~-------~~~l~~L~~L~L~~n~-l~~~~~~~-~~~l~~L~~L~L~~N-~l~~~~~~~~~~ 288 (452)
T 3zyi_A 219 GLEELEMSGNHFPEIRPGS-------FHGLSSLKKLWVMNSQ-VSLIERNA-FDGLASLVELNLAHN-NLSSLPHDLFTP 288 (452)
T ss_dssp TCCEEECTTSCCSEECGGG-------GTTCTTCCEEECTTSC-CCEECTTT-TTTCTTCCEEECCSS-CCSCCCTTSSTT
T ss_pred cccEEECcCCcCcccCccc-------ccCccCCCEEEeCCCc-CceECHHH-hcCCCCCCEEECCCC-cCCccChHHhcc
Confidence 9999999998643322322 3348999999999864 67776544 567899999999997 57777655 357
Q ss_pred CCCcceEEcccCCcccccCCC
Q 022501 244 TPRLREVRKNWGLDKGCWEGN 264 (296)
Q Consensus 244 ~~~L~~l~l~~~~~~~~~~~~ 264 (296)
+++|+.++++. ..|.++.+
T Consensus 289 l~~L~~L~L~~--Np~~CdC~ 307 (452)
T 3zyi_A 289 LRYLVELHLHH--NPWNCDCD 307 (452)
T ss_dssp CTTCCEEECCS--SCEECSTT
T ss_pred ccCCCEEEccC--CCcCCCCC
Confidence 89999999984 34555544
No 4
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.81 E-value=4.1e-19 Score=161.34 Aligned_cols=234 Identities=16% Similarity=0.185 Sum_probs=110.8
Q ss_pred ccceEEEeeccCccccccCCCCCCcCCCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCccccccCCcc
Q 022501 7 ANLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGMLT 86 (296)
Q Consensus 7 ~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 86 (296)
++|++|+|+++.++++.+..+. .+++|++|++++|.+..++...+.++++|++|++++|.+..+.+ .....++
T Consensus 56 ~~L~~L~L~~n~i~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~-----~~~~~l~ 128 (477)
T 2id5_A 56 PHLEELELNENIVSAVEPGAFN--NLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLD-----YMFQDLY 128 (477)
T ss_dssp TTCCEEECTTSCCCEECTTTTT--TCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECT-----TTTTTCT
T ss_pred CCCCEEECCCCccCEeChhhhh--CCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCCh-----hHccccc
Confidence 3444444444444444333333 34444444444444444443333444444444444443333311 1112344
Q ss_pred ccceeEecccccccccccccCcccccCCCccEEEeccCcccccccc-CccccCCccEEEeccCcCccccCCcccccCCCC
Q 022501 87 QIKSLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCNNLINLVP-SSASFENLTTLEVSYCQRLKNLVSSSTAKSLVC 165 (296)
Q Consensus 87 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~ 165 (296)
+|+.|.++++.. ..+... .+..+++|++|+++++ .+..++. .+..+++|+.|+++++. +...... .+..+++
T Consensus 129 ~L~~L~l~~n~l-~~~~~~---~~~~l~~L~~L~l~~n-~l~~~~~~~l~~l~~L~~L~l~~n~-i~~~~~~-~~~~l~~ 201 (477)
T 2id5_A 129 NLKSLEVGDNDL-VYISHR---AFSGLNSLEQLTLEKC-NLTSIPTEALSHLHGLIVLRLRHLN-INAIRDY-SFKRLYR 201 (477)
T ss_dssp TCCEEEECCTTC-CEECTT---SSTTCTTCCEEEEESC-CCSSCCHHHHTTCTTCCEEEEESCC-CCEECTT-CSCSCTT
T ss_pred cCCEEECCCCcc-ceeChh---hccCCCCCCEEECCCC-cCcccChhHhcccCCCcEEeCCCCc-CcEeChh-hcccCcc
Confidence 555555544321 111111 1344555555555554 2222222 23344555555555432 2222211 2344555
Q ss_pred ccEEEEeCccccceecccccc-----------------cccccccCCccceeeccCCcCcceecCCCccccCCCccEEee
Q 022501 166 LMKLRIDGCKLMTEIISSEGD-----------------VEEDEIVFSRLKWLSLECLDSLTSFCSGNCTFKFPSLEDLFV 228 (296)
Q Consensus 166 L~~L~l~~~~~~~~~~~~~~~-----------------~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~L~~L~l 228 (296)
|++|++++|..+..++..... ....+..+++|+.|+++++. ++.++... +..+++|+.|++
T Consensus 202 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~-~~~l~~L~~L~L 279 (477)
T 2id5_A 202 LKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNP-ISTIEGSM-LHELLRLQEIQL 279 (477)
T ss_dssp CCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSC-CCEECTTS-CTTCTTCCEEEC
T ss_pred cceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCc-CCccChhh-ccccccCCEEEC
Confidence 666666555444333221100 00123346777888887764 56655433 457788888888
Q ss_pred ccCCccccccCCcccCCCcceEEcccCC
Q 022501 229 IDCPKMMIFSFGVLSTPRLREVRKNWGL 256 (296)
Q Consensus 229 ~~c~~l~~~~~~~~~~~~L~~l~l~~~~ 256 (296)
.++..-...|..+..+++|+.|+++.+.
T Consensus 280 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 307 (477)
T 2id5_A 280 VGGQLAVVEPYAFRGLNYLRVLNVSGNQ 307 (477)
T ss_dssp CSSCCSEECTTTBTTCTTCCEEECCSSC
T ss_pred CCCccceECHHHhcCcccCCEEECCCCc
Confidence 8875333345566678889999887654
No 5
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.81 E-value=1.5e-18 Score=148.68 Aligned_cols=229 Identities=14% Similarity=0.048 Sum_probs=168.7
Q ss_pred cccceEEEeeccCccccccCCCCCCcCCCccEEEeccCCCCccC--hHHHhcCCcccEEEEeccccceEeecCccccccC
Q 022501 6 IANLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSDNFS--IGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAG 83 (296)
Q Consensus 6 l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~--~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 83 (296)
.++|++|++++++++.++...+. .+++|++|++++|.+.... +..+..+++|++|++++|.+..+.. ...
T Consensus 27 ~~~l~~L~L~~n~l~~i~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~------~~~ 98 (306)
T 2z66_A 27 PSSATRLELESNKLQSLPHGVFD--KLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSS------NFL 98 (306)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTT--TCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEE------EEE
T ss_pred CCCCCEEECCCCccCccCHhHhh--ccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChh------hcC
Confidence 46899999999999988666667 8999999999999887542 2345679999999999998776533 234
Q ss_pred CccccceeEecccccccccccccCcccccCCCccEEEeccCccccccccCccccCCccEEEeccCcCccc-cCCcccccC
Q 022501 84 MLTQIKSLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCNNLINLVPSSASFENLTTLEVSYCQRLKN-LVSSSTAKS 162 (296)
Q Consensus 84 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~-~~~~~~~~~ 162 (296)
.+++|++|.++++.. ..++. ...+..+++|+.|+++++......+..+..+++|++|+++++. +.+ ..+ ..+..
T Consensus 99 ~l~~L~~L~l~~n~l-~~~~~--~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~-~~~~~ 173 (306)
T 2z66_A 99 GLEQLEHLDFQHSNL-KQMSE--FSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNS-FQENFLP-DIFTE 173 (306)
T ss_dssp TCTTCCEEECTTSEE-ESSTT--TTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCE-EGGGEEC-SCCTT
T ss_pred CCCCCCEEECCCCcc-ccccc--chhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCc-cccccch-hHHhh
Confidence 589999999998643 33322 0116678999999999986555555567778999999999875 333 222 24678
Q ss_pred CCCccEEEEeCccccceecccccccccccccCCccceeeccCCcCcceecCCCccccCCCccEEeeccCCccccccCCcc
Q 022501 163 LVCLMKLRIDGCKLMTEIISSEGDVEEDEIVFSRLKWLSLECLDSLTSFCSGNCTFKFPSLEDLFVIDCPKMMIFSFGVL 242 (296)
Q Consensus 163 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~ 242 (296)
+++|++|++++|......+.. +..+++|++|+++++. ++.++... +..+++|+.|++++|......|..+.
T Consensus 174 l~~L~~L~Ls~n~l~~~~~~~-------~~~l~~L~~L~L~~N~-l~~~~~~~-~~~l~~L~~L~L~~N~l~~~~~~~~~ 244 (306)
T 2z66_A 174 LRNLTFLDLSQCQLEQLSPTA-------FNSLSSLQVLNMSHNN-FFSLDTFP-YKCLNSLQVLDYSLNHIMTSKKQELQ 244 (306)
T ss_dssp CTTCCEEECTTSCCCEECTTT-------TTTCTTCCEEECTTSC-CSBCCSGG-GTTCTTCCEEECTTSCCCBCSSSSCC
T ss_pred CcCCCEEECCCCCcCCcCHHH-------hcCCCCCCEEECCCCc-cCccChhh-ccCcccCCEeECCCCCCcccCHHHHH
Confidence 899999999998543222222 3348999999999875 56654433 46789999999999865555666666
Q ss_pred cC-CCcceEEcccCC
Q 022501 243 ST-PRLREVRKNWGL 256 (296)
Q Consensus 243 ~~-~~L~~l~l~~~~ 256 (296)
.+ ++|++++++.+.
T Consensus 245 ~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 245 HFPSSLAFLNLTQND 259 (306)
T ss_dssp CCCTTCCEEECTTCC
T ss_pred hhhccCCEEEccCCC
Confidence 76 499999998544
No 6
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.81 E-value=1.4e-18 Score=157.76 Aligned_cols=231 Identities=20% Similarity=0.131 Sum_probs=155.5
Q ss_pred cccceEEEeeccCccccccCCCCCCcCCCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCccccccCCc
Q 022501 6 IANLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGML 85 (296)
Q Consensus 6 l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 85 (296)
+++|++|+|++|.++.++...+. .+++|++|++++|.+..+++..+..+++|++|++.+|.+..+.+. ....+
T Consensus 79 l~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-----~~~~l 151 (477)
T 2id5_A 79 LFNLRTLGLRSNRLKLIPLGVFT--GLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHR-----AFSGL 151 (477)
T ss_dssp CTTCCEEECCSSCCCSCCTTSST--TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTT-----SSTTC
T ss_pred CccCCEEECCCCcCCccCccccc--CCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChh-----hccCC
Confidence 68899999999988888666666 789999999999988877767788899999999998877665431 12336
Q ss_pred cccceeEeccccccccccccc---------------------CcccccCCCccEEEeccCccccccccCccccCCccEEE
Q 022501 86 TQIKSLKLWELSNLLHIWEQC---------------------YKLDSVFQNLETLEIWWCNNLINLVPSSASFENLTTLE 144 (296)
Q Consensus 86 ~~L~~L~l~~~~~l~~~~~~~---------------------~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~ 144 (296)
++|+.|.++++. +..++... ...+..+++|+.|++++|..+..++.......+|+.|+
T Consensus 152 ~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 230 (477)
T 2id5_A 152 NSLEQLTLEKCN-LTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLS 230 (477)
T ss_dssp TTCCEEEEESCC-CSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEE
T ss_pred CCCCEEECCCCc-CcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEE
Confidence 666666666542 22221110 00134455666666666555555555444445666666
Q ss_pred eccCcCccccCCcccccCCCCccEEEEeCccccceecccccccccccccCCccceeeccCCcCcceecCCCccccCCCcc
Q 022501 145 VSYCQRLKNLVSSSTAKSLVCLMKLRIDGCKLMTEIISSEGDVEEDEIVFSRLKWLSLECLDSLTSFCSGNCTFKFPSLE 224 (296)
Q Consensus 145 l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~L~ 224 (296)
++++ .++.++. ..+..+++|++|++++|. +..+... .+..+++|++|+++++. ++.+.... +..+++|+
T Consensus 231 l~~n-~l~~~~~-~~~~~l~~L~~L~Ls~n~-l~~~~~~------~~~~l~~L~~L~L~~n~-l~~~~~~~-~~~l~~L~ 299 (477)
T 2id5_A 231 ITHC-NLTAVPY-LAVRHLVYLRFLNLSYNP-ISTIEGS------MLHELLRLQEIQLVGGQ-LAVVEPYA-FRGLNYLR 299 (477)
T ss_dssp EESS-CCCSCCH-HHHTTCTTCCEEECCSSC-CCEECTT------SCTTCTTCCEEECCSSC-CSEECTTT-BTTCTTCC
T ss_pred CcCC-cccccCH-HHhcCccccCeeECCCCc-CCccChh------hccccccCCEEECCCCc-cceECHHH-hcCcccCC
Confidence 6654 3443332 235677888888888765 3333221 24458999999999874 67765544 56889999
Q ss_pred EEeeccCCccccccCC-cccCCCcceEEcccCC
Q 022501 225 DLFVIDCPKMMIFSFG-VLSTPRLREVRKNWGL 256 (296)
Q Consensus 225 ~L~l~~c~~l~~~~~~-~~~~~~L~~l~l~~~~ 256 (296)
.|++++| .++.++.. +..+++|+.|+++.+.
T Consensus 300 ~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 300 VLNVSGN-QLTTLEESVFHSVGNLETLILDSNP 331 (477)
T ss_dssp EEECCSS-CCSCCCGGGBSCGGGCCEEECCSSC
T ss_pred EEECCCC-cCceeCHhHcCCCcccCEEEccCCC
Confidence 9999997 57777664 3577999999997543
No 7
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.81 E-value=6.9e-19 Score=152.30 Aligned_cols=204 Identities=17% Similarity=0.228 Sum_probs=163.4
Q ss_pred cccceEEEeeccCccccccCCCCCCcCCCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCc----cccc
Q 022501 6 IANLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGE----VEKQ 81 (296)
Q Consensus 6 l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~----~~~~ 81 (296)
+++|++|++++|.+..+ +..++ .+++|++|++++|.+..+|. .+.++++|++|++++|...+..+... +...
T Consensus 103 l~~L~~L~L~~n~l~~l-p~~~~--~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~ 178 (328)
T 4fcg_A 103 LSHLQHMTIDAAGLMEL-PDTMQ--QFAGLETLTLARNPLRALPA-SIASLNRLRELSIRACPELTELPEPLASTDASGE 178 (328)
T ss_dssp GTTCSEEEEESSCCCCC-CSCGG--GGTTCSEEEEESCCCCCCCG-GGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCC
T ss_pred CCCCCEEECCCCCccch-hHHHh--ccCCCCEEECCCCccccCcH-HHhcCcCCCEEECCCCCCccccChhHhhccchhh
Confidence 78999999999999876 45566 89999999999999888876 57889999999999985544333211 0111
Q ss_pred cCCccccceeEecccccccccccccCcccccCCCccEEEeccCccccccccCccccCCccEEEeccCcCccccCCccccc
Q 022501 82 AGMLTQIKSLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCNNLINLVPSSASFENLTTLEVSYCQRLKNLVSSSTAK 161 (296)
Q Consensus 82 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~ 161 (296)
...+++|++|.++++. +..++.. +..+++|+.|++++| .+..++..+..+++|++|++++|......+. .+.
T Consensus 179 ~~~l~~L~~L~L~~n~-l~~lp~~----l~~l~~L~~L~L~~N-~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~--~~~ 250 (328)
T 4fcg_A 179 HQGLVNLQSLRLEWTG-IRSLPAS----IANLQNLKSLKIRNS-PLSALGPAIHHLPKLEELDLRGCTALRNYPP--IFG 250 (328)
T ss_dssp EEESTTCCEEEEEEEC-CCCCCGG----GGGCTTCCEEEEESS-CCCCCCGGGGGCTTCCEEECTTCTTCCBCCC--CTT
T ss_pred hccCCCCCEEECcCCC-cCcchHh----hcCCCCCCEEEccCC-CCCcCchhhccCCCCCEEECcCCcchhhhHH--Hhc
Confidence 2348999999999864 4466554 778999999999997 4556777788899999999999887766542 467
Q ss_pred CCCCccEEEEeCccccceecccccccccccccCCccceeeccCCcCcceecCCCccccCCCccEEeecc
Q 022501 162 SLVCLMKLRIDGCKLMTEIISSEGDVEEDEIVFSRLKWLSLECLDSLTSFCSGNCTFKFPSLEDLFVID 230 (296)
Q Consensus 162 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~L~~L~l~~ 230 (296)
.+++|++|++++|...+.++...+. +++|++|++++|+.+..++. .+..+++|+.+.+..
T Consensus 251 ~l~~L~~L~L~~n~~~~~~p~~~~~-------l~~L~~L~L~~n~~~~~iP~--~l~~L~~L~~l~l~~ 310 (328)
T 4fcg_A 251 GRAPLKRLILKDCSNLLTLPLDIHR-------LTQLEKLDLRGCVNLSRLPS--LIAQLPANCIILVPP 310 (328)
T ss_dssp CCCCCCEEECTTCTTCCBCCTTGGG-------CTTCCEEECTTCTTCCCCCG--GGGGSCTTCEEECCG
T ss_pred CCCCCCEEECCCCCchhhcchhhhc-------CCCCCEEeCCCCCchhhccH--HHhhccCceEEeCCH
Confidence 8999999999999988877765444 99999999999998888876 357899999998865
No 8
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.81 E-value=3e-19 Score=153.83 Aligned_cols=219 Identities=16% Similarity=0.118 Sum_probs=165.7
Q ss_pred ccccceEEEeeccCccccccCCCCCCcCCCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCccccccCC
Q 022501 5 VIANLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGM 84 (296)
Q Consensus 5 ~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 84 (296)
.+++|++|++++++++++.+..+. .+++|++|++++|.+...++ +..+++|++|++++|.+.++..
T Consensus 32 ~~~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~~---------- 97 (317)
T 3o53_A 32 SAWNVKELDLSGNPLSQISAADLA--PFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV---------- 97 (317)
T ss_dssp TGGGCSEEECTTSCCCCCCHHHHT--TCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEEE----------
T ss_pred cCCCCCEEECcCCccCcCCHHHhh--CCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCccccccC----------
Confidence 356899999999888887655666 78999999998888775553 6788999999999988777644
Q ss_pred ccccceeEecccccccccccccCcccccCCCccEEEeccCccccccccCccccCCccEEEeccCcCccccCCcccccCCC
Q 022501 85 LTQIKSLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCNNLINLVPSSASFENLTTLEVSYCQRLKNLVSSSTAKSLV 164 (296)
Q Consensus 85 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~ 164 (296)
.++|+.|.++++. +..++ ...+++|++|+++++......+..+..+++|++|+++++ .+....+......++
T Consensus 98 ~~~L~~L~l~~n~-l~~~~------~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~l~ 169 (317)
T 3o53_A 98 GPSIETLHAANNN-ISRVS------CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLN-EIDTVNFAELAASSD 169 (317)
T ss_dssp CTTCCEEECCSSC-CSEEE------ECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTS-CCCEEEGGGGGGGTT
T ss_pred CCCcCEEECCCCc-cCCcC------ccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCC-CCCcccHHHHhhccC
Confidence 5889999998764 33333 234678999999987544333446677899999999986 455544333445789
Q ss_pred CccEEEEeCccccceecccccccccccccCCccceeeccCCcCcceecCCCccccCCCccEEeeccCCccccccCCcccC
Q 022501 165 CLMKLRIDGCKLMTEIISSEGDVEEDEIVFSRLKWLSLECLDSLTSFCSGNCTFKFPSLEDLFVIDCPKMMIFSFGVLST 244 (296)
Q Consensus 165 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~ 244 (296)
+|++|++++|. ++.+... ..+++|++|+++++. ++.++.. +..+++|+.|++++| .++.+|..+..+
T Consensus 170 ~L~~L~L~~N~-l~~~~~~--------~~l~~L~~L~Ls~N~-l~~l~~~--~~~l~~L~~L~L~~N-~l~~l~~~~~~l 236 (317)
T 3o53_A 170 TLEHLNLQYNF-IYDVKGQ--------VVFAKLKTLDLSSNK-LAFMGPE--FQSAAGVTWISLRNN-KLVLIEKALRFS 236 (317)
T ss_dssp TCCEEECTTSC-CCEEECC--------CCCTTCCEEECCSSC-CCEECGG--GGGGTTCSEEECTTS-CCCEECTTCCCC
T ss_pred cCCEEECCCCc-Ccccccc--------cccccCCEEECCCCc-CCcchhh--hcccCcccEEECcCC-cccchhhHhhcC
Confidence 99999999986 4444322 128999999999974 7777663 578899999999997 677899888888
Q ss_pred CCcceEEcccCCcc
Q 022501 245 PRLREVRKNWGLDK 258 (296)
Q Consensus 245 ~~L~~l~l~~~~~~ 258 (296)
++|+.++++.+...
T Consensus 237 ~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 237 QNLEHFDLRGNGFH 250 (317)
T ss_dssp TTCCEEECTTCCCB
T ss_pred CCCCEEEccCCCcc
Confidence 99999999865543
No 9
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.81 E-value=2.1e-18 Score=149.35 Aligned_cols=221 Identities=18% Similarity=0.199 Sum_probs=147.3
Q ss_pred cccceEEEeeccCccccccCCCCCCcCCCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCccccccCCc
Q 022501 6 IANLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGML 85 (296)
Q Consensus 6 l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 85 (296)
.+++++|++++++++++.+..+. .+++|++|++++|.+..+.+..+.++++|++|++++|.+..+.. ..+
T Consensus 51 ~~~l~~L~L~~n~i~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~--------~~~ 120 (330)
T 1xku_A 51 PPDTALLDLQNNKITEIKDGDFK--NLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPE--------KMP 120 (330)
T ss_dssp CTTCCEEECCSSCCCCBCTTTTT--TCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCS--------SCC
T ss_pred CCCCeEEECCCCcCCEeChhhhc--cCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccCh--------hhc
Confidence 46788888888888888665666 78899999998888887766677888899999998887665422 123
Q ss_pred cccceeEecccccccccccccCcccccCCCccEEEeccCcccc--ccccCccccCCccEEEeccCcCccccCCcccccCC
Q 022501 86 TQIKSLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCNNLI--NLVPSSASFENLTTLEVSYCQRLKNLVSSSTAKSL 163 (296)
Q Consensus 86 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~--~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l 163 (296)
++|++|.++++.. ..++... +..+++|+.|+++++.... ..+..+..+++|++|+++++. ++.++. ...
T Consensus 121 ~~L~~L~l~~n~l-~~~~~~~---~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~l~~----~~~ 191 (330)
T 1xku_A 121 KTLQELRVHENEI-TKVRKSV---FNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN-ITTIPQ----GLP 191 (330)
T ss_dssp TTCCEEECCSSCC-CBBCHHH---HTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC-CCSCCS----SCC
T ss_pred ccccEEECCCCcc-cccCHhH---hcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCc-cccCCc----ccc
Confidence 6788888876542 2322211 4557778888887764321 233345667788888887653 444432 123
Q ss_pred CCccEEEEeCcccccee-cccccccccccccCCccceeeccCCcCcceecCCCccccCCCccEEeeccCCccccccCCcc
Q 022501 164 VCLMKLRIDGCKLMTEI-ISSEGDVEEDEIVFSRLKWLSLECLDSLTSFCSGNCTFKFPSLEDLFVIDCPKMMIFSFGVL 242 (296)
Q Consensus 164 ~~L~~L~l~~~~~~~~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~ 242 (296)
++|++|++++|.. +.+ +.. +..+++|++|+++++. ++.++... +..+++|++|++++| .++.+|..+.
T Consensus 192 ~~L~~L~l~~n~l-~~~~~~~-------~~~l~~L~~L~Ls~n~-l~~~~~~~-~~~l~~L~~L~L~~N-~l~~lp~~l~ 260 (330)
T 1xku_A 192 PSLTELHLDGNKI-TKVDAAS-------LKGLNNLAKLGLSFNS-ISAVDNGS-LANTPHLRELHLNNN-KLVKVPGGLA 260 (330)
T ss_dssp TTCSEEECTTSCC-CEECTGG-------GTTCTTCCEEECCSSC-CCEECTTT-GGGSTTCCEEECCSS-CCSSCCTTTT
T ss_pred ccCCEEECCCCcC-CccCHHH-------hcCCCCCCEEECCCCc-CceeChhh-ccCCCCCCEEECCCC-cCccCChhhc
Confidence 6788888877653 322 221 2337788888888764 56655433 456788888888876 4667777777
Q ss_pred cCCCcceEEcccCC
Q 022501 243 STPRLREVRKNWGL 256 (296)
Q Consensus 243 ~~~~L~~l~l~~~~ 256 (296)
.+++|++++++.+.
T Consensus 261 ~l~~L~~L~l~~N~ 274 (330)
T 1xku_A 261 DHKYIQVVYLHNNN 274 (330)
T ss_dssp TCSSCCEEECCSSC
T ss_pred cCCCcCEEECCCCc
Confidence 77888888886544
No 10
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.80 E-value=5.6e-19 Score=151.89 Aligned_cols=227 Identities=13% Similarity=0.009 Sum_probs=165.4
Q ss_pred ccceEEEeeccCccc--cccCCCCCCcCCCccEEEecc-CCCC-ccChHHHhcCCcccEEEEeccccceEeecCcccccc
Q 022501 7 ANLEELKLSGKDITM--ICHDHLPKHLFQNLKSLEIVS-DKSD-NFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQA 82 (296)
Q Consensus 7 ~~L~~L~L~~~~~~~--~~~~~~~~~~l~~L~~L~l~~-~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 82 (296)
.++++|+++++++.+ ..+..+. .+++|++|++++ |... .+| ..+.++++|++|++++|.+.+..+. ..
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~--~l~~L~~L~L~~~n~l~~~~p-~~l~~l~~L~~L~Ls~n~l~~~~p~-----~~ 121 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLA--NLPYLNFLYIGGINNLVGPIP-PAIAKLTQLHYLYITHTNVSGAIPD-----FL 121 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGG--GCTTCSEEEEEEETTEESCCC-GGGGGCTTCSEEEEEEECCEEECCG-----GG
T ss_pred ceEEEEECCCCCccCCcccChhHh--CCCCCCeeeCCCCCcccccCC-hhHhcCCCCCEEECcCCeeCCcCCH-----HH
Confidence 579999999998886 4456666 899999999984 6655 555 4678899999999999987755432 23
Q ss_pred CCccccceeEecccccccccccccCcccccCCCccEEEeccCccccccccCccccC-CccEEEeccCcCccccCCccccc
Q 022501 83 GMLTQIKSLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCNNLINLVPSSASFE-NLTTLEVSYCQRLKNLVSSSTAK 161 (296)
Q Consensus 83 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~-~L~~L~l~~c~~l~~~~~~~~~~ 161 (296)
..+++|++|+++++.....++.. +..+++|++|+++++.....+|..+..++ +|++|+++++. +....+. .+.
T Consensus 122 ~~l~~L~~L~Ls~N~l~~~~p~~----~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~-l~~~~~~-~~~ 195 (313)
T 1ogq_A 122 SQIKTLVTLDFSYNALSGTLPPS----ISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNR-LTGKIPP-TFA 195 (313)
T ss_dssp GGCTTCCEEECCSSEEESCCCGG----GGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSE-EEEECCG-GGG
T ss_pred hCCCCCCEEeCCCCccCCcCChH----HhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCe-eeccCCh-HHh
Confidence 55899999999987544344444 67789999999999765557777777777 89999998864 4322222 345
Q ss_pred CCCCccEEEEeCccccceecccccccccccccCCccceeeccCCcCcceecCCCccccCCCccEEeeccCCccccccCCc
Q 022501 162 SLVCLMKLRIDGCKLMTEIISSEGDVEEDEIVFSRLKWLSLECLDSLTSFCSGNCTFKFPSLEDLFVIDCPKMMIFSFGV 241 (296)
Q Consensus 162 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~ 241 (296)
.++ |++|++++|......+.. +..+++|+.|+++++. ++..... +..+++|++|++++|.....+|..+
T Consensus 196 ~l~-L~~L~Ls~N~l~~~~~~~-------~~~l~~L~~L~L~~N~-l~~~~~~--~~~l~~L~~L~Ls~N~l~~~~p~~l 264 (313)
T 1ogq_A 196 NLN-LAFVDLSRNMLEGDASVL-------FGSDKNTQKIHLAKNS-LAFDLGK--VGLSKNLNGLDLRNNRIYGTLPQGL 264 (313)
T ss_dssp GCC-CSEEECCSSEEEECCGGG-------CCTTSCCSEEECCSSE-ECCBGGG--CCCCTTCCEEECCSSCCEECCCGGG
T ss_pred CCc-ccEEECcCCcccCcCCHH-------HhcCCCCCEEECCCCc-eeeecCc--ccccCCCCEEECcCCcccCcCChHH
Confidence 555 999999998654333332 3348899999999875 3433222 3567889999999986555788888
Q ss_pred ccCCCcceEEcccCCcc
Q 022501 242 LSTPRLREVRKNWGLDK 258 (296)
Q Consensus 242 ~~~~~L~~l~l~~~~~~ 258 (296)
..+++|+.|+++.+...
T Consensus 265 ~~l~~L~~L~Ls~N~l~ 281 (313)
T 1ogq_A 265 TQLKFLHSLNVSFNNLC 281 (313)
T ss_dssp GGCTTCCEEECCSSEEE
T ss_pred hcCcCCCEEECcCCccc
Confidence 88899999999865543
No 11
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.80 E-value=5.1e-19 Score=152.18 Aligned_cols=225 Identities=13% Similarity=0.040 Sum_probs=170.6
Q ss_pred ccccceEEEeec-cCccccccCCCCCCcCCCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCccccccC
Q 022501 5 VIANLEELKLSG-KDITMICHDHLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAG 83 (296)
Q Consensus 5 ~l~~L~~L~L~~-~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 83 (296)
.+++|++|++++ +++.+..+..+. .+++|++|++++|.+....+..+.++++|++|++++|.+.+..+ ....
T Consensus 74 ~l~~L~~L~L~~~n~l~~~~p~~l~--~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p-----~~~~ 146 (313)
T 1ogq_A 74 NLPYLNFLYIGGINNLVGPIPPAIA--KLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLP-----PSIS 146 (313)
T ss_dssp GCTTCSEEEEEEETTEESCCCGGGG--GCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCC-----GGGG
T ss_pred CCCCCCeeeCCCCCcccccCChhHh--cCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCC-----hHHh
Confidence 378999999996 888866566677 89999999999998884333467899999999999997764332 2335
Q ss_pred CccccceeEecccccccccccccCcccccCC-CccEEEeccCccccccccCccccCCccEEEeccCcCccccCCcccccC
Q 022501 84 MLTQIKSLKLWELSNLLHIWEQCYKLDSVFQ-NLETLEIWWCNNLINLVPSSASFENLTTLEVSYCQRLKNLVSSSTAKS 162 (296)
Q Consensus 84 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~-~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~ 162 (296)
.+++|++|.++++.....++.. +..++ +|+.|+++++......+..+..++ |+.|+++++. ++...+ ..+..
T Consensus 147 ~l~~L~~L~L~~N~l~~~~p~~----l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~-l~~~~~-~~~~~ 219 (313)
T 1ogq_A 147 SLPNLVGITFDGNRISGAIPDS----YGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNM-LEGDAS-VLFGS 219 (313)
T ss_dssp GCTTCCEEECCSSCCEEECCGG----GGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSE-EEECCG-GGCCT
T ss_pred cCCCCCeEECcCCcccCcCCHH----HhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCc-ccCcCC-HHHhc
Confidence 6999999999987654355544 66676 899999999865556777766666 9999999864 443332 35678
Q ss_pred CCCccEEEEeCccccceecccccccccccccCCccceeeccCCcCcc-eecCCCccccCCCccEEeeccCCccccccCCc
Q 022501 163 LVCLMKLRIDGCKLMTEIISSEGDVEEDEIVFSRLKWLSLECLDSLT-SFCSGNCTFKFPSLEDLFVIDCPKMMIFSFGV 241 (296)
Q Consensus 163 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~-~l~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~ 241 (296)
+++|++|++++|.....++. +..+++|++|+++++. ++ .++. .+..+++|+.|++++|+....+|..
T Consensus 220 l~~L~~L~L~~N~l~~~~~~--------~~~l~~L~~L~Ls~N~-l~~~~p~--~l~~l~~L~~L~Ls~N~l~~~ip~~- 287 (313)
T 1ogq_A 220 DKNTQKIHLAKNSLAFDLGK--------VGLSKNLNGLDLRNNR-IYGTLPQ--GLTQLKFLHSLNVSFNNLCGEIPQG- 287 (313)
T ss_dssp TSCCSEEECCSSEECCBGGG--------CCCCTTCCEEECCSSC-CEECCCG--GGGGCTTCCEEECCSSEEEEECCCS-
T ss_pred CCCCCEEECCCCceeeecCc--------ccccCCCCEEECcCCc-ccCcCCh--HHhcCcCCCEEECcCCcccccCCCC-
Confidence 99999999999865433332 2238999999999976 45 3333 3578899999999998655578776
Q ss_pred ccCCCcceEEcccC
Q 022501 242 LSTPRLREVRKNWG 255 (296)
Q Consensus 242 ~~~~~L~~l~l~~~ 255 (296)
..+++|+.++++.+
T Consensus 288 ~~l~~L~~l~l~~N 301 (313)
T 1ogq_A 288 GNLQRFDVSAYANN 301 (313)
T ss_dssp TTGGGSCGGGTCSS
T ss_pred ccccccChHHhcCC
Confidence 58899999988743
No 12
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.80 E-value=1.1e-18 Score=167.43 Aligned_cols=157 Identities=17% Similarity=0.039 Sum_probs=85.6
Q ss_pred cccceEEEeeccCccccccCCCCCCcCCCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCccccccCCc
Q 022501 6 IANLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGML 85 (296)
Q Consensus 6 l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 85 (296)
+++|++|+++++.+.+..+..+. .+++|+.|++++|.+....+..+..+++|++|++.+|.+.+..+ .....+
T Consensus 393 ~~~L~~L~L~~n~l~~~~p~~l~--~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p-----~~~~~l 465 (768)
T 3rgz_A 393 KNTLQELYLQNNGFTGKIPPTLS--NCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIP-----QELMYV 465 (768)
T ss_dssp TCCCCEEECCSSEEEEECCGGGG--GCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCC-----GGGGGC
T ss_pred cCCccEEECCCCccccccCHHHh--cCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCC-----HHHcCC
Confidence 56777777777777655455555 67777777777776653333456667777777777775553322 112335
Q ss_pred cccceeEecccccccccccccCcccccCCCccEEEeccCccccccccCccccCCccEEEeccCcCccccCCcccccCCCC
Q 022501 86 TQIKSLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCNNLINLVPSSASFENLTTLEVSYCQRLKNLVSSSTAKSLVC 165 (296)
Q Consensus 86 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~ 165 (296)
++|+.|.++++.....++.. +..+++|+.|++++|...+.+|..+..+++|++|++++|......+ ..+..+++
T Consensus 466 ~~L~~L~L~~N~l~~~~p~~----l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p--~~l~~l~~ 539 (768)
T 3rgz_A 466 KTLETLILDFNDLTGEIPSG----LSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIP--AELGDCRS 539 (768)
T ss_dssp TTCCEEECCSSCCCSCCCGG----GGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECC--GGGGGCTT
T ss_pred CCceEEEecCCcccCcCCHH----HhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCC--HHHcCCCC
Confidence 55666666555433333332 4445555555555554444444444555555555555543222222 12344555
Q ss_pred ccEEEEeCcc
Q 022501 166 LMKLRIDGCK 175 (296)
Q Consensus 166 L~~L~l~~~~ 175 (296)
|+.|++++|.
T Consensus 540 L~~L~Ls~N~ 549 (768)
T 3rgz_A 540 LIWLDLNTNL 549 (768)
T ss_dssp CCEEECCSSE
T ss_pred CCEEECCCCc
Confidence 5555555544
No 13
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.80 E-value=3.3e-18 Score=159.78 Aligned_cols=159 Identities=18% Similarity=0.201 Sum_probs=67.0
Q ss_pred cccceEEEeeccCccccccCCCCCCcCCCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCccccccCCc
Q 022501 6 IANLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGML 85 (296)
Q Consensus 6 l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 85 (296)
+++|++|+++++.++.++ ..+. .+++|++|++++|.+..+++..+..+++|++|++.+|.+....+.. ....+
T Consensus 277 l~~L~~L~l~~n~l~~lp-~~l~--~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~----~~~~l 349 (606)
T 3t6q_A 277 FSGLQELDLTATHLSELP-SGLV--GLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTG----CLENL 349 (606)
T ss_dssp CTTCSEEECTTSCCSCCC-SSCC--SCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSS----TTTTC
T ss_pred ccCCCEEeccCCccCCCC-hhhc--ccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchh----hhhcc
Confidence 345555555555544442 2233 4555555555555554443334445555555555554332211111 12335
Q ss_pred cccceeEecccccccccccccCcccccCCCccEEEeccCccccccccCccccCCccEEEeccCcCccccCCcccccCCCC
Q 022501 86 TQIKSLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCNNLINLVPSSASFENLTTLEVSYCQRLKNLVSSSTAKSLVC 165 (296)
Q Consensus 86 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~ 165 (296)
++|++|.++++... .+.. ....+..+++|++|+++++......+..+..+++|++|+++++. +....+...+..+++
T Consensus 350 ~~L~~L~l~~n~l~-~~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~ 426 (606)
T 3t6q_A 350 ENLRELDLSHDDIE-TSDC-CNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTR-LKVKDAQSPFQNLHL 426 (606)
T ss_dssp TTCCEEECCSSCCC-EEEE-STTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCC-EECCTTCCTTTTCTT
T ss_pred CcCCEEECCCCccc-cccC-cchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCc-CCCcccchhhhCccc
Confidence 55555555544321 1100 00013445555555555543222223334444555555555432 222211112344455
Q ss_pred ccEEEEeCc
Q 022501 166 LMKLRIDGC 174 (296)
Q Consensus 166 L~~L~l~~~ 174 (296)
|++|++++|
T Consensus 427 L~~L~l~~n 435 (606)
T 3t6q_A 427 LKVLNLSHS 435 (606)
T ss_dssp CCEEECTTC
T ss_pred CCEEECCCC
Confidence 555555544
No 14
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.79 E-value=1.2e-18 Score=158.59 Aligned_cols=218 Identities=16% Similarity=0.111 Sum_probs=171.0
Q ss_pred ccccceEEEeeccCccccccCCCCCCcCCCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCccccccCC
Q 022501 5 VIANLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGM 84 (296)
Q Consensus 5 ~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 84 (296)
.+++|++|+|+++.+.++.+..+. .+++|++|++++|.+...++ +..+++|++|++++|.+..+.+
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~---------- 97 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLA--PFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV---------- 97 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGT--TCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE----------
T ss_pred cCCCccEEEeeCCcCCCCCHHHHh--CCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC----------
Confidence 356999999999999988777777 89999999999998875554 7889999999999998887754
Q ss_pred ccccceeEecccccccccccccCcccccCCCccEEEeccCccccccccCccccCCccEEEeccCcCccccCCcccccCCC
Q 022501 85 LTQIKSLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCNNLINLVPSSASFENLTTLEVSYCQRLKNLVSSSTAKSLV 164 (296)
Q Consensus 85 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~ 164 (296)
.++|+.|.++++.. ..++ ...+++|+.|+++++......+..+..+++|+.|+++++. ++...+......++
T Consensus 98 ~~~L~~L~L~~N~l-~~~~------~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~l~~~l~ 169 (487)
T 3oja_A 98 GPSIETLHAANNNI-SRVS------CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNE-IDTVNFAELAASSD 169 (487)
T ss_dssp CTTCCEEECCSSCC-CCEE------ECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSC-CCEEEGGGGGGGTT
T ss_pred CCCcCEEECcCCcC-CCCC------ccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCC-CCCcChHHHhhhCC
Confidence 58999999998653 3332 2346889999999975544445567778999999999864 55544433345789
Q ss_pred CccEEEEeCccccceecccccccccccccCCccceeeccCCcCcceecCCCccccCCCccEEeeccCCccccccCCcccC
Q 022501 165 CLMKLRIDGCKLMTEIISSEGDVEEDEIVFSRLKWLSLECLDSLTSFCSGNCTFKFPSLEDLFVIDCPKMMIFSFGVLST 244 (296)
Q Consensus 165 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~ 244 (296)
+|++|++++|. +..++.. ..+++|+.|+++++. ++.++.. +..+++|+.|++++| .+..+|..+..+
T Consensus 170 ~L~~L~Ls~N~-l~~~~~~--------~~l~~L~~L~Ls~N~-l~~~~~~--~~~l~~L~~L~Ls~N-~l~~lp~~l~~l 236 (487)
T 3oja_A 170 TLEHLNLQYNF-IYDVKGQ--------VVFAKLKTLDLSSNK-LAFMGPE--FQSAAGVTWISLRNN-KLVLIEKALRFS 236 (487)
T ss_dssp TCCEEECTTSC-CCEEECC--------CCCTTCCEEECCSSC-CCEECGG--GGGGTTCSEEECTTS-CCCEECTTCCCC
T ss_pred cccEEecCCCc-ccccccc--------ccCCCCCEEECCCCC-CCCCCHh--HcCCCCccEEEecCC-cCcccchhhccC
Confidence 99999999986 4444321 238999999999974 7777664 578899999999997 577889888888
Q ss_pred CCcceEEcccCCc
Q 022501 245 PRLREVRKNWGLD 257 (296)
Q Consensus 245 ~~L~~l~l~~~~~ 257 (296)
++|+.++++.+..
T Consensus 237 ~~L~~L~l~~N~l 249 (487)
T 3oja_A 237 QNLEHFDLRGNGF 249 (487)
T ss_dssp TTCCEEECTTCCB
T ss_pred CCCCEEEcCCCCC
Confidence 9999999986543
No 15
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.79 E-value=2.7e-18 Score=151.98 Aligned_cols=84 Identities=12% Similarity=0.071 Sum_probs=48.0
Q ss_pred cccceEEEeeccCccccccCCCCCCcCCCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCccccccCCc
Q 022501 6 IANLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGML 85 (296)
Q Consensus 6 l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 85 (296)
+++|++|+++++.++++.+..+. .+++|++|++++|.+..+++..++++++|++|++++|.+..+.+ .....+
T Consensus 68 l~~L~~L~L~~n~i~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~-----~~~~~l 140 (390)
T 3o6n_A 68 FRQVELLNLNDLQIEEIDTYAFA--YAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPR-----GIFHNT 140 (390)
T ss_dssp CCCCSEEECTTSCCCEECTTTTT--TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT-----TTTTTC
T ss_pred cccCcEEECCCCcccccChhhcc--CCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCH-----HHhcCC
Confidence 45666666666666665544555 56666666666666666655555666666666666665543321 001235
Q ss_pred cccceeEeccc
Q 022501 86 TQIKSLKLWEL 96 (296)
Q Consensus 86 ~~L~~L~l~~~ 96 (296)
++|++|.++++
T Consensus 141 ~~L~~L~L~~n 151 (390)
T 3o6n_A 141 PKLTTLSMSNN 151 (390)
T ss_dssp TTCCEEECCSS
T ss_pred CCCcEEECCCC
Confidence 55555555544
No 16
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.79 E-value=7e-19 Score=153.76 Aligned_cols=230 Identities=18% Similarity=0.163 Sum_probs=155.3
Q ss_pred cccceEEEeeccCccccccCCCCCCcCCCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCccccccCCc
Q 022501 6 IANLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGML 85 (296)
Q Consensus 6 l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 85 (296)
.++|++|++++++++++.+..+. .+++|++|++++|.+..+++..+.++++|++|++++|.+.++.+ .....+
T Consensus 51 ~~~L~~L~l~~n~i~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-----~~~~~l 123 (353)
T 2z80_A 51 TEAVKSLDLSNNRITYISNSDLQ--RCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSS-----SWFKPL 123 (353)
T ss_dssp CTTCCEEECTTSCCCEECTTTTT--TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCH-----HHHTTC
T ss_pred cccCcEEECCCCcCcccCHHHhc--cCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCH-----hHhCCC
Confidence 46888888888888887655666 78888888888888887776677888888888888887665432 112447
Q ss_pred cccceeEecccccccccccccCcccccCCCccEEEeccCcccccccc-CccccCCccEEEeccCcCccccCCcccccCCC
Q 022501 86 TQIKSLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCNNLINLVP-SSASFENLTTLEVSYCQRLKNLVSSSTAKSLV 164 (296)
Q Consensus 86 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~ 164 (296)
++|++|+++++. +..++.. ..+..+++|++|+++++..++.++. .+..+++|++|+++++. +....+. .+..++
T Consensus 124 ~~L~~L~L~~n~-l~~l~~~--~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~-~l~~l~ 198 (353)
T 2z80_A 124 SSLTFLNLLGNP-YKTLGET--SLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASD-LQSYEPK-SLKSIQ 198 (353)
T ss_dssp TTCSEEECTTCC-CSSSCSS--CSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETT-CCEECTT-TTTTCS
T ss_pred ccCCEEECCCCC-CcccCch--hhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCC-cCccCHH-HHhccc
Confidence 888888888753 3344330 1155678888888888765665543 45667888888888764 4433222 356677
Q ss_pred CccEEEEeCccccceecccccccccccccCCccceeeccCCcCcceecCC------------------------------
Q 022501 165 CLMKLRIDGCKLMTEIISSEGDVEEDEIVFSRLKWLSLECLDSLTSFCSG------------------------------ 214 (296)
Q Consensus 165 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~------------------------------ 214 (296)
+|++|++++|.. +.++... ...+++|++|+++++. ++.+...
T Consensus 199 ~L~~L~l~~n~l-~~~~~~~------~~~~~~L~~L~L~~n~-l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~ 270 (353)
T 2z80_A 199 NVSHLILHMKQH-ILLLEIF------VDVTSSVECLELRDTD-LDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVM 270 (353)
T ss_dssp EEEEEEEECSCS-TTHHHHH------HHHTTTEEEEEEESCB-CTTCCCC------CCCCCCEEEEESCBCCHHHHHHHH
T ss_pred cCCeecCCCCcc-ccchhhh------hhhcccccEEECCCCc-cccccccccccccccchhhccccccccccCcchhhhH
Confidence 888888887653 2222211 1126677777777643 2222110
Q ss_pred CccccCCCccEEeeccCCccccccCCc-ccCCCcceEEcccCC
Q 022501 215 NCTFKFPSLEDLFVIDCPKMMIFSFGV-LSTPRLREVRKNWGL 256 (296)
Q Consensus 215 ~~~~~~~~L~~L~l~~c~~l~~~~~~~-~~~~~L~~l~l~~~~ 256 (296)
..+..+++|+.|++++| .++.+|..+ ..+++|++++++.+.
T Consensus 271 ~~l~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 271 KLLNQISGLLELEFSRN-QLKSVPDGIFDRLTSLQKIWLHTNP 312 (353)
T ss_dssp HHHHTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred HHHhcccCCCEEECCCC-CCCccCHHHHhcCCCCCEEEeeCCC
Confidence 01346789999999997 577888875 688999999998554
No 17
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.78 E-value=3.8e-18 Score=159.26 Aligned_cols=108 Identities=12% Similarity=0.053 Sum_probs=66.6
Q ss_pred cccceEEEeeccCccccccCCCCCCcCCCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCccccccCCc
Q 022501 6 IANLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGML 85 (296)
Q Consensus 6 l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 85 (296)
+++|++|+++++.++++.+..+. .+++|+.|++++|.+..+++..++.+++|++|++++|.+..+.+ .....+
T Consensus 74 l~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~-----~~~~~l 146 (597)
T 3oja_B 74 FRQVELLNLNDLQIEEIDTYAFA--YAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPR-----GIFHNT 146 (597)
T ss_dssp CCCCSEEECTTSCCCEECTTTTT--TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT-----TTTTTC
T ss_pred CCCCcEEECCCCCCCCCChHHhc--CCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCH-----HHhccC
Confidence 56777777777777777655666 67777777777777777766666777777777777776654422 011346
Q ss_pred cccceeEecccccccccccccCcccccCCCccEEEeccC
Q 022501 86 TQIKSLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWC 124 (296)
Q Consensus 86 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~ 124 (296)
++|++|.++++.. ..++... +..+++|+.|+++++
T Consensus 147 ~~L~~L~Ls~N~l-~~~~~~~---~~~l~~L~~L~L~~N 181 (597)
T 3oja_B 147 PKLTTLSMSNNNL-ERIEDDT---FQATTSLQNLQLSSN 181 (597)
T ss_dssp TTCCEEECCSSCC-CBCCTTT---TTTCTTCCEEECTTS
T ss_pred CCCCEEEeeCCcC-CCCChhh---hhcCCcCcEEECcCC
Confidence 6666666666532 2221111 344555566655554
No 18
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.78 E-value=3.6e-18 Score=153.61 Aligned_cols=205 Identities=23% Similarity=0.239 Sum_probs=164.6
Q ss_pred ccccceEEEeeccCccccccCCCCCCcCCCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCccccccCC
Q 022501 5 VIANLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGM 84 (296)
Q Consensus 5 ~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 84 (296)
.+++|++|+|++|.++.+.+..+. .+++|++|++++|.+..++...+..+++|++|++++|.+..+.+. ....
T Consensus 86 ~l~~L~~L~Ls~n~i~~i~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~-----~~~~ 158 (440)
T 3zyj_A 86 HLRHLEILQLSRNHIRTIEIGAFN--GLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSY-----AFNR 158 (440)
T ss_dssp SCSSCCEEECCSSCCCEECGGGGT--TCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTT-----TTTT
T ss_pred CCCCCCEEECCCCcCCccChhhcc--CCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHH-----Hhhh
Confidence 478999999999999998777777 899999999999999999988889999999999999988766431 2355
Q ss_pred ccccceeEecccccccccccccCcccccCCCccEEEeccCccccccccCccccCCccEEEeccCcCccccCCcccccCCC
Q 022501 85 LTQIKSLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCNNLINLVPSSASFENLTTLEVSYCQRLKNLVSSSTAKSLV 164 (296)
Q Consensus 85 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~ 164 (296)
+++|+.|.++++..+..++... +..+++|+.|+++++ .+..++ .+..+++|+.|+++++ .++...+. .+..++
T Consensus 159 l~~L~~L~l~~~~~l~~i~~~~---~~~l~~L~~L~L~~n-~l~~~~-~~~~l~~L~~L~Ls~N-~l~~~~~~-~~~~l~ 231 (440)
T 3zyj_A 159 IPSLRRLDLGELKRLSYISEGA---FEGLSNLRYLNLAMC-NLREIP-NLTPLIKLDELDLSGN-HLSAIRPG-SFQGLM 231 (440)
T ss_dssp CTTCCEEECCCCTTCCEECTTT---TTTCSSCCEEECTTS-CCSSCC-CCTTCSSCCEEECTTS-CCCEECTT-TTTTCT
T ss_pred CcccCEeCCCCCCCcceeCcch---hhcccccCeecCCCC-cCcccc-ccCCCcccCEEECCCC-ccCccChh-hhccCc
Confidence 9999999999988887775533 567899999999987 566665 4667899999999986 46655443 567899
Q ss_pred CccEEEEeCccccceecccccccccccccCCccceeeccCCcCcceecCCCccccCCCccEEeeccCC
Q 022501 165 CLMKLRIDGCKLMTEIISSEGDVEEDEIVFSRLKWLSLECLDSLTSFCSGNCTFKFPSLEDLFVIDCP 232 (296)
Q Consensus 165 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~L~~L~l~~c~ 232 (296)
+|++|++++|.. ..+... .+..+++|+.|+++++ +++.++... +..+++|+.|++.+++
T Consensus 232 ~L~~L~L~~n~l-~~~~~~------~~~~l~~L~~L~L~~N-~l~~~~~~~-~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 232 HLQKLWMIQSQI-QVIERN------AFDNLQSLVEINLAHN-NLTLLPHDL-FTPLHHLERIHLHHNP 290 (440)
T ss_dssp TCCEEECTTCCC-CEECTT------SSTTCTTCCEEECTTS-CCCCCCTTT-TSSCTTCCEEECCSSC
T ss_pred cCCEEECCCCce-eEEChh------hhcCCCCCCEEECCCC-CCCccChhH-hccccCCCEEEcCCCC
Confidence 999999999753 333221 2445899999999997 477776544 5678999999999876
No 19
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.78 E-value=2.1e-18 Score=165.51 Aligned_cols=233 Identities=16% Similarity=0.065 Sum_probs=128.2
Q ss_pred ccceEEEeeccCccccccCCCCCCcCCCccEEEeccCCCC-ccChHHHhcCCcccEEEEeccccceEeecCc--------
Q 022501 7 ANLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSD-NFSIGFLQRFHNVERLKLRNSSYKEIFSNGE-------- 77 (296)
Q Consensus 7 ~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-------- 77 (296)
++|++|++++|.+.+..+..+. .+++|++|++++|... .+|...+.++++|++|++.+|.+.+..+...
T Consensus 294 ~~L~~L~Ls~n~l~~~~p~~~~--~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~ 371 (768)
T 3rgz_A 294 DTLTGLDLSGNHFYGAVPPFFG--SCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLL 371 (768)
T ss_dssp TTCSEEECCSSEEEECCCGGGG--GCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCS
T ss_pred CcCCEEECcCCcCCCccchHHh--cCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCc
Confidence 5555555555555544344444 5566666666555554 5555555566666666666664443222100
Q ss_pred -c-----------ccccC--CccccceeEecccccccccccccCcccccCCCccEEEeccCccccccccCccccCCccEE
Q 022501 78 -V-----------EKQAG--MLTQIKSLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCNNLINLVPSSASFENLTTL 143 (296)
Q Consensus 78 -~-----------~~~~~--~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L 143 (296)
+ ..... .+++|+.|.++++.....++.. +..+++|+.|+++++...+..|..+..+++|+.|
T Consensus 372 ~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~----l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L 447 (768)
T 3rgz_A 372 TLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPT----LSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDL 447 (768)
T ss_dssp EEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGG----GGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEE
T ss_pred EEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHH----HhcCCCCCEEECcCCcccCcccHHHhcCCCCCEE
Confidence 0 00000 0233444444333222222222 4455566666666654444455555556666666
Q ss_pred EeccCcCccccCCcccccCCCCccEEEEeCccccceecccccccccccccCCccceeeccCCcCcceecCCCccccCCCc
Q 022501 144 EVSYCQRLKNLVSSSTAKSLVCLMKLRIDGCKLMTEIISSEGDVEEDEIVFSRLKWLSLECLDSLTSFCSGNCTFKFPSL 223 (296)
Q Consensus 144 ~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~L 223 (296)
++++|......+ ..+..+++|++|++++|.....++.. +..+++|++|+++++.-...++. .+..+++|
T Consensus 448 ~L~~n~l~~~~p--~~~~~l~~L~~L~L~~N~l~~~~p~~-------l~~l~~L~~L~L~~N~l~~~~p~--~~~~l~~L 516 (768)
T 3rgz_A 448 KLWLNMLEGEIP--QELMYVKTLETLILDFNDLTGEIPSG-------LSNCTNLNWISLSNNRLTGEIPK--WIGRLENL 516 (768)
T ss_dssp ECCSSCCCSCCC--GGGGGCTTCCEEECCSSCCCSCCCGG-------GGGCTTCCEEECCSSCCCSCCCG--GGGGCTTC
T ss_pred ECCCCcccCcCC--HHHcCCCCceEEEecCCcccCcCCHH-------HhcCCCCCEEEccCCccCCcCCh--HHhcCCCC
Confidence 666554222222 13455666777777666544334333 33478888888888763323433 34678889
Q ss_pred cEEeeccCCccccccCCcccCCCcceEEcccCC
Q 022501 224 EDLFVIDCPKMMIFSFGVLSTPRLREVRKNWGL 256 (296)
Q Consensus 224 ~~L~l~~c~~l~~~~~~~~~~~~L~~l~l~~~~ 256 (296)
++|++++|.....+|..+..+++|+.++++.+.
T Consensus 517 ~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 549 (768)
T 3rgz_A 517 AILKLSNNSFSGNIPAELGDCRSLIWLDLNTNL 549 (768)
T ss_dssp CEEECCSSCCEEECCGGGGGCTTCCEEECCSSE
T ss_pred CEEECCCCcccCcCCHHHcCCCCCCEEECCCCc
Confidence 999999887666788888888899999887543
No 20
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.78 E-value=9.3e-18 Score=151.34 Aligned_cols=112 Identities=16% Similarity=0.178 Sum_probs=66.9
Q ss_pred CccccCCccEEEeccCcCccccCCcccccCCCCccEEEEeCccccceecccccccccccccCCccceeeccCCcCcceec
Q 022501 133 SSASFENLTTLEVSYCQRLKNLVSSSTAKSLVCLMKLRIDGCKLMTEIISSEGDVEEDEIVFSRLKWLSLECLDSLTSFC 212 (296)
Q Consensus 133 ~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~ 212 (296)
.+..+++|++|+++++. +....+. .+..+++|++|++++|.. +.+... .+..+++|++|+++++. ++.+.
T Consensus 294 ~~~~l~~L~~L~Ls~n~-l~~~~~~-~~~~l~~L~~L~Ls~N~l-~~~~~~------~~~~l~~L~~L~Ls~N~-l~~~~ 363 (455)
T 3v47_A 294 VFSHFTDLEQLTLAQNE-INKIDDN-AFWGLTHLLKLNLSQNFL-GSIDSR------MFENLDKLEVLDLSYNH-IRALG 363 (455)
T ss_dssp TTTTCTTCCEEECTTSC-CCEECTT-TTTTCTTCCEEECCSSCC-CEECGG------GGTTCTTCCEEECCSSC-CCEEC
T ss_pred hcccCCCCCEEECCCCc-ccccChh-HhcCcccCCEEECCCCcc-CCcChh------HhcCcccCCEEECCCCc-ccccC
Confidence 34455666666666543 3333222 345566777777766643 222211 12337788888888764 56654
Q ss_pred CCCccccCCCccEEeeccCCccccccCCc-ccCCCcceEEcccCC
Q 022501 213 SGNCTFKFPSLEDLFVIDCPKMMIFSFGV-LSTPRLREVRKNWGL 256 (296)
Q Consensus 213 ~~~~~~~~~~L~~L~l~~c~~l~~~~~~~-~~~~~L~~l~l~~~~ 256 (296)
... +..+++|++|++++| .++.+|... ..+++|++++++.+.
T Consensus 364 ~~~-~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 406 (455)
T 3v47_A 364 DQS-FLGLPNLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNP 406 (455)
T ss_dssp TTT-TTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred hhh-ccccccccEEECCCC-ccccCCHhHhccCCcccEEEccCCC
Confidence 433 456788888888886 466666543 567888888887544
No 21
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.78 E-value=5.7e-18 Score=152.87 Aligned_cols=205 Identities=22% Similarity=0.213 Sum_probs=164.6
Q ss_pred ccccceEEEeeccCccccccCCCCCCcCCCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCccccccCC
Q 022501 5 VIANLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGM 84 (296)
Q Consensus 5 ~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 84 (296)
.+++|++|+|++|+++.+.+..+. .+++|++|++++|.+..++...+..+++|++|++++|.+..+.+ .....
T Consensus 97 ~l~~L~~L~Ls~n~i~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-----~~~~~ 169 (452)
T 3zyi_A 97 HLHHLEVLQLGRNSIRQIEVGAFN--GLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPS-----YAFNR 169 (452)
T ss_dssp TCTTCCEEECCSSCCCEECTTTTT--TCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECT-----TTTTT
T ss_pred CCCCCCEEECCCCccCCcChhhcc--CcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCH-----hHHhc
Confidence 378999999999999999777788 89999999999999999998888999999999999998876643 12356
Q ss_pred ccccceeEecccccccccccccCcccccCCCccEEEeccCccccccccCccccCCccEEEeccCcCccccCCcccccCCC
Q 022501 85 LTQIKSLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCNNLINLVPSSASFENLTTLEVSYCQRLKNLVSSSTAKSLV 164 (296)
Q Consensus 85 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~ 164 (296)
+++|+.|.++++..+..++... +..+++|+.|+++++ .+..++ .+..+++|+.|+++++. +....+. .+..++
T Consensus 170 l~~L~~L~l~~~~~l~~i~~~~---~~~l~~L~~L~L~~n-~l~~~~-~~~~l~~L~~L~Ls~N~-l~~~~~~-~~~~l~ 242 (452)
T 3zyi_A 170 VPSLMRLDLGELKKLEYISEGA---FEGLFNLKYLNLGMC-NIKDMP-NLTPLVGLEELEMSGNH-FPEIRPG-SFHGLS 242 (452)
T ss_dssp CTTCCEEECCCCTTCCEECTTT---TTTCTTCCEEECTTS-CCSSCC-CCTTCTTCCEEECTTSC-CSEECGG-GGTTCT
T ss_pred CCcccEEeCCCCCCccccChhh---ccCCCCCCEEECCCC-cccccc-cccccccccEEECcCCc-CcccCcc-cccCcc
Confidence 9999999999988888776543 567899999999987 455554 46678999999999864 5555433 578899
Q ss_pred CccEEEEeCccccceecccccccccccccCCccceeeccCCcCcceecCCCccccCCCccEEeeccCC
Q 022501 165 CLMKLRIDGCKLMTEIISSEGDVEEDEIVFSRLKWLSLECLDSLTSFCSGNCTFKFPSLEDLFVIDCP 232 (296)
Q Consensus 165 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~L~~L~l~~c~ 232 (296)
+|++|++++|.. ..+... .+..+++|+.|+++++ +++.++... +..+++|+.|++.+++
T Consensus 243 ~L~~L~L~~n~l-~~~~~~------~~~~l~~L~~L~L~~N-~l~~~~~~~-~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 243 SLKKLWVMNSQV-SLIERN------AFDGLASLVELNLAHN-NLSSLPHDL-FTPLRYLVELHLHHNP 301 (452)
T ss_dssp TCCEEECTTSCC-CEECTT------TTTTCTTCCEEECCSS-CCSCCCTTS-STTCTTCCEEECCSSC
T ss_pred CCCEEEeCCCcC-ceECHH------HhcCCCCCCEEECCCC-cCCccChHH-hccccCCCEEEccCCC
Confidence 999999999764 333221 2344899999999997 577776544 5678999999999876
No 22
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.78 E-value=5.5e-18 Score=146.82 Aligned_cols=221 Identities=18% Similarity=0.187 Sum_probs=117.7
Q ss_pred cccceEEEeeccCccccccCCCCCCcCCCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCccccccCCc
Q 022501 6 IANLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGML 85 (296)
Q Consensus 6 l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 85 (296)
.++|++|+++++++..+.+..+. .+++|++|++++|.+..+++..+.++++|++|++++|.+..+.. ...
T Consensus 53 ~~~l~~L~l~~n~i~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~--------~~~ 122 (332)
T 2ft3_A 53 SPDTTLLDLQNNDISELRKDDFK--GLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPP--------NLP 122 (332)
T ss_dssp CTTCCEEECCSSCCCEECTTTTT--TCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCS--------SCC
T ss_pred CCCCeEEECCCCcCCccCHhHhh--CCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccCc--------ccc
Confidence 34566666666666655444455 56666666666666665555555666666666666665543321 112
Q ss_pred cccceeEecccccccccccccCcccccCCCccEEEeccCcccc--ccccCccccCCccEEEeccCcCccccCCcccccCC
Q 022501 86 TQIKSLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCNNLI--NLVPSSASFENLTTLEVSYCQRLKNLVSSSTAKSL 163 (296)
Q Consensus 86 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~--~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l 163 (296)
++|++|.++++. +..++... +..+++|+.|+++++.... ..+..+..+ +|++|+++++. ++.++. ...
T Consensus 123 ~~L~~L~l~~n~-i~~~~~~~---~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~-l~~l~~----~~~ 192 (332)
T 2ft3_A 123 SSLVELRIHDNR-IRKVPKGV---FSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAK-LTGIPK----DLP 192 (332)
T ss_dssp TTCCEEECCSSC-CCCCCSGG---GSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSB-CSSCCS----SSC
T ss_pred ccCCEEECCCCc-cCccCHhH---hCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCC-CCccCc----ccc
Confidence 556666665543 22222111 3445666666666543211 122222223 55555555432 333221 112
Q ss_pred CCccEEEEeCccccceecccccccccccccCCccceeeccCCcCcceecCCCccccCCCccEEeeccCCccccccCCccc
Q 022501 164 VCLMKLRIDGCKLMTEIISSEGDVEEDEIVFSRLKWLSLECLDSLTSFCSGNCTFKFPSLEDLFVIDCPKMMIFSFGVLS 243 (296)
Q Consensus 164 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~ 243 (296)
++|++|++++|... .+.. ..+..+++|+.|+++++. ++.++... +..+++|+.|++++| .++.+|..+..
T Consensus 193 ~~L~~L~l~~n~i~-~~~~------~~l~~l~~L~~L~L~~N~-l~~~~~~~-~~~l~~L~~L~L~~N-~l~~lp~~l~~ 262 (332)
T 2ft3_A 193 ETLNELHLDHNKIQ-AIEL------EDLLRYSKLYRLGLGHNQ-IRMIENGS-LSFLPTLRELHLDNN-KLSRVPAGLPD 262 (332)
T ss_dssp SSCSCCBCCSSCCC-CCCT------TSSTTCTTCSCCBCCSSC-CCCCCTTG-GGGCTTCCEEECCSS-CCCBCCTTGGG
T ss_pred CCCCEEECCCCcCC-ccCH------HHhcCCCCCCEEECCCCc-CCcCChhH-hhCCCCCCEEECCCC-cCeecChhhhc
Confidence 45666666655322 1111 123346777777777753 55554332 456777888888776 46677777777
Q ss_pred CCCcceEEcccCC
Q 022501 244 TPRLREVRKNWGL 256 (296)
Q Consensus 244 ~~~L~~l~l~~~~ 256 (296)
+++|+.++++.+.
T Consensus 263 l~~L~~L~l~~N~ 275 (332)
T 2ft3_A 263 LKLLQVVYLHTNN 275 (332)
T ss_dssp CTTCCEEECCSSC
T ss_pred CccCCEEECCCCC
Confidence 7778888776543
No 23
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.78 E-value=2.1e-17 Score=140.09 Aligned_cols=222 Identities=13% Similarity=0.067 Sum_probs=165.2
Q ss_pred eEEEeeccCccccccCCCCCCcCCCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCccccccCCccccc
Q 022501 10 EELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGMLTQIK 89 (296)
Q Consensus 10 ~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~ 89 (296)
.+++.++++++.++ .. ..++|++|++++|.+..++...+..+++|++|++++|.+.++.+ .....+++|+
T Consensus 14 ~~~~c~~~~l~~ip---~~--~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-----~~~~~l~~L~ 83 (285)
T 1ozn_A 14 VTTSCPQQGLQAVP---VG--IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDA-----AAFTGLALLE 83 (285)
T ss_dssp CEEECCSSCCSSCC---TT--CCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECT-----TTTTTCTTCC
T ss_pred eEEEcCcCCcccCC---cC--CCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCH-----hhcCCccCCC
Confidence 46777777777763 22 45799999999999998887788999999999999998776633 1234589999
Q ss_pred eeEecccccccccccccCcccccCCCccEEEeccCccccccccCccccCCccEEEeccCcCccccCCcccccCCCCccEE
Q 022501 90 SLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCNNLINLVPSSASFENLTTLEVSYCQRLKNLVSSSTAKSLVCLMKL 169 (296)
Q Consensus 90 ~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L 169 (296)
+|+++++..+..+.... +..+++|++|+++++......+..+..+++|++|+++++. +...+.. .+..+++|++|
T Consensus 84 ~L~l~~n~~l~~~~~~~---~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~-~~~~l~~L~~L 158 (285)
T 1ozn_A 84 QLDLSDNAQLRSVDPAT---FHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNA-LQALPDD-TFRDLGNLTHL 158 (285)
T ss_dssp EEECCSCTTCCCCCTTT---TTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTT-TTTTCTTCCEE
T ss_pred EEeCCCCCCccccCHHH---hcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCc-ccccCHh-HhccCCCccEE
Confidence 99999887566653322 6678999999999975444334556778999999999864 5554432 46788999999
Q ss_pred EEeCccccceecccccccccccccCCccceeeccCCcCcceecCCCccccCCCccEEeeccCCccccccCC-cccCCCcc
Q 022501 170 RIDGCKLMTEIISSEGDVEEDEIVFSRLKWLSLECLDSLTSFCSGNCTFKFPSLEDLFVIDCPKMMIFSFG-VLSTPRLR 248 (296)
Q Consensus 170 ~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~L~~L~l~~c~~l~~~~~~-~~~~~~L~ 248 (296)
++++|. ++.++.. .+..+++|++|+++++. ++.+.... +..+++|+.|+++++ .++.++.. +..+++|+
T Consensus 159 ~l~~n~-l~~~~~~------~~~~l~~L~~L~l~~n~-l~~~~~~~-~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~ 228 (285)
T 1ozn_A 159 FLHGNR-ISSVPER------AFRGLHSLDRLLLHQNR-VAHVHPHA-FRDLGRLMTLYLFAN-NLSALPTEALAPLRALQ 228 (285)
T ss_dssp ECCSSC-CCEECTT------TTTTCTTCCEEECCSSC-CCEECTTT-TTTCTTCCEEECCSS-CCSCCCHHHHTTCTTCC
T ss_pred ECCCCc-ccccCHH------HhcCccccCEEECCCCc-ccccCHhH-ccCcccccEeeCCCC-cCCcCCHHHcccCcccC
Confidence 999974 4444332 13348999999999975 66664433 567899999999997 46666643 56789999
Q ss_pred eEEcccCC
Q 022501 249 EVRKNWGL 256 (296)
Q Consensus 249 ~l~l~~~~ 256 (296)
.++++.+.
T Consensus 229 ~L~l~~N~ 236 (285)
T 1ozn_A 229 YLRLNDNP 236 (285)
T ss_dssp EEECCSSC
T ss_pred EEeccCCC
Confidence 99998543
No 24
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.77 E-value=1.1e-17 Score=156.16 Aligned_cols=232 Identities=17% Similarity=0.146 Sum_probs=144.1
Q ss_pred ccccceEEEeeccCccccccCCCCCCcCCCccEEEeccCCCC-ccChHHHhcCCcccEEEEeccccceEeecCccccccC
Q 022501 5 VIANLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSD-NFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAG 83 (296)
Q Consensus 5 ~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 83 (296)
.+++|++|+++++.+.++.+..+. .+++|+.|++++|... .++...+..+++|++|++++|.+...... .....
T Consensus 299 ~l~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~---~~~~~ 373 (606)
T 3t6q_A 299 GLSTLKKLVLSANKFENLCQISAS--NFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCC---NLQLR 373 (606)
T ss_dssp SCTTCCEEECTTCCCSBGGGGCGG--GCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEES---TTTTT
T ss_pred ccccCCEEECccCCcCcCchhhhh--ccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCc---chhcc
Confidence 368999999999999888666677 8999999999988776 67776788899999999999987766421 11234
Q ss_pred CccccceeEecccccccccccccCcccccCCCccEEEeccCcccccccc-CccccCCccEEEeccCcCccccCCcccccC
Q 022501 84 MLTQIKSLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCNNLINLVP-SSASFENLTTLEVSYCQRLKNLVSSSTAKS 162 (296)
Q Consensus 84 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~ 162 (296)
.+++|++|.++++......+.. +..+++|+.|+++++......+. .+..+++|+.|++++|. +....+. .+..
T Consensus 374 ~l~~L~~L~l~~n~l~~~~~~~----~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~-~~~~ 447 (606)
T 3t6q_A 374 NLSHLQSLNLSYNEPLSLKTEA----FKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSL-LDISSEQ-LFDG 447 (606)
T ss_dssp TCTTCCEEECCSCSCEEECTTT----TTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCC-CBTTCTT-TTTT
T ss_pred cCCCCCEEECCCCcCCcCCHHH----hcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCc-cCCcCHH-HHhC
Confidence 5888888888876432222222 55667788888877644333332 25567777777777654 3332222 3456
Q ss_pred CCCccEEEEeCccccceecccccccccccccCCccceeeccCCcCcceecCCCccccCCCccEEeeccCCccccccCCcc
Q 022501 163 LVCLMKLRIDGCKLMTEIISSEGDVEEDEIVFSRLKWLSLECLDSLTSFCSGNCTFKFPSLEDLFVIDCPKMMIFSFGVL 242 (296)
Q Consensus 163 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~ 242 (296)
+++|++|++++|...+..+... ..+..+++|++|+++++. ++.+.+.. +..+++|+.|++++|......|..+.
T Consensus 448 l~~L~~L~L~~n~l~~~~~~~~----~~~~~l~~L~~L~Ls~n~-l~~~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~l~ 521 (606)
T 3t6q_A 448 LPALQHLNLQGNHFPKGNIQKT----NSLQTLGRLEILVLSFCD-LSSIDQHA-FTSLKMMNHVDLSHNRLTSSSIEALS 521 (606)
T ss_dssp CTTCCEEECTTCBCGGGEECSS----CGGGGCTTCCEEECTTSC-CCEECTTT-TTTCTTCCEEECCSSCCCGGGGGGGT
T ss_pred CCCCCEEECCCCCCCccccccc----hhhccCCCccEEECCCCc-cCccChhh-hccccCCCEEECCCCccCcCChhHhC
Confidence 7777777777765433111110 113336667777776653 44443322 34566666666666543333344444
Q ss_pred cCCCcceEEccc
Q 022501 243 STPRLREVRKNW 254 (296)
Q Consensus 243 ~~~~L~~l~l~~ 254 (296)
.+++| .++++.
T Consensus 522 ~l~~L-~L~L~~ 532 (606)
T 3t6q_A 522 HLKGI-YLNLAS 532 (606)
T ss_dssp TCCSC-EEECCS
T ss_pred ccccc-EEECcC
Confidence 44555 555543
No 25
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.77 E-value=1.5e-17 Score=149.95 Aligned_cols=64 Identities=22% Similarity=0.021 Sum_probs=41.9
Q ss_pred cCCccceeeccCCcCcceecCCCccccCCCccEEeeccCCccccccCCcccCCCcceEEcccCCcc
Q 022501 193 VFSRLKWLSLECLDSLTSFCSGNCTFKFPSLEDLFVIDCPKMMIFSFGVLSTPRLREVRKNWGLDK 258 (296)
Q Consensus 193 ~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~l~l~~~~~~ 258 (296)
.+++|++|+++++. ++.+.... +..+++|++|++++|..-...|..+..+++|++|+++.+...
T Consensus 321 ~l~~L~~L~Ls~N~-l~~~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 384 (455)
T 3v47_A 321 GLTHLLKLNLSQNF-LGSIDSRM-FENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLK 384 (455)
T ss_dssp TCTTCCEEECCSSC-CCEECGGG-GTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred CcccCCEEECCCCc-cCCcChhH-hcCcccCCEEECCCCcccccChhhccccccccEEECCCCccc
Confidence 36777777777753 45554322 456788888888887533333666667888888888765443
No 26
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.76 E-value=1e-17 Score=141.90 Aligned_cols=207 Identities=17% Similarity=0.116 Sum_probs=157.0
Q ss_pred cccceEEEeeccCccccccCCCCCCcCCCccEEEeccCCCCccChHHHhcCCcccEEEEeccc-cceEeecCccccccCC
Q 022501 6 IANLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSS-YKEIFSNGEVEKQAGM 84 (296)
Q Consensus 6 l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~~~ 84 (296)
.++|++|++++++++.+.+..+. .+++|++|++++|.+..+++..+..+++|++|++++|. +..+.+ .....
T Consensus 31 ~~~l~~L~l~~n~i~~~~~~~~~--~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~-----~~~~~ 103 (285)
T 1ozn_A 31 PAASQRIFLHGNRISHVPAASFR--ACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDP-----ATFHG 103 (285)
T ss_dssp CTTCSEEECTTSCCCEECTTTTT--TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCT-----TTTTT
T ss_pred CCCceEEEeeCCcCCccCHHHcc--cCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCH-----HHhcC
Confidence 56899999999999998767777 89999999999999888877788899999999999995 554422 22345
Q ss_pred ccccceeEecccccccccccccCcccccCCCccEEEeccCcccccccc-CccccCCccEEEeccCcCccccCCcccccCC
Q 022501 85 LTQIKSLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCNNLINLVP-SSASFENLTTLEVSYCQRLKNLVSSSTAKSL 163 (296)
Q Consensus 85 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l 163 (296)
+++|++|.++++... .++.. .+..+++|++|+++++. +..++. .+..+++|+.|+++++ .++.++.. .+..+
T Consensus 104 l~~L~~L~l~~n~l~-~~~~~---~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~-~~~~l 176 (285)
T 1ozn_A 104 LGRLHTLHLDRCGLQ-ELGPG---LFRGLAALQYLYLQDNA-LQALPDDTFRDLGNLTHLFLHGN-RISSVPER-AFRGL 176 (285)
T ss_dssp CTTCCEEECTTSCCC-CCCTT---TTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCCEECTT-TTTTC
T ss_pred CcCCCEEECCCCcCC-EECHh---HhhCCcCCCEEECCCCc-ccccCHhHhccCCCccEEECCCC-cccccCHH-HhcCc
Confidence 899999999987543 33221 16678999999999874 455554 4677899999999986 46655432 46778
Q ss_pred CCccEEEEeCccccceecccccccccccccCCccceeeccCCcCcceecCCCccccCCCccEEeeccCCccc
Q 022501 164 VCLMKLRIDGCKLMTEIISSEGDVEEDEIVFSRLKWLSLECLDSLTSFCSGNCTFKFPSLEDLFVIDCPKMM 235 (296)
Q Consensus 164 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~L~~L~l~~c~~l~ 235 (296)
++|++|++++|......+.. +..+++|+.|+++++. ++.++... +..+++|+.|++++++...
T Consensus 177 ~~L~~L~l~~n~l~~~~~~~-------~~~l~~L~~L~l~~n~-l~~~~~~~-~~~l~~L~~L~l~~N~~~c 239 (285)
T 1ozn_A 177 HSLDRLLLHQNRVAHVHPHA-------FRDLGRLMTLYLFANN-LSALPTEA-LAPLRALQYLRLNDNPWVC 239 (285)
T ss_dssp TTCCEEECCSSCCCEECTTT-------TTTCTTCCEEECCSSC-CSCCCHHH-HTTCTTCCEEECCSSCEEC
T ss_pred cccCEEECCCCcccccCHhH-------ccCcccccEeeCCCCc-CCcCCHHH-cccCcccCEEeccCCCccC
Confidence 99999999998643322332 3348999999999974 66655422 4678999999999986443
No 27
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.76 E-value=2e-17 Score=154.43 Aligned_cols=205 Identities=15% Similarity=0.006 Sum_probs=133.9
Q ss_pred cCCCccEEEeccCCCCccC--hHHHhcCCcccEEEEeccccceEeecCccccccCCccccceeEecccccccccccccCc
Q 022501 31 LFQNLKSLEIVSDKSDNFS--IGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGMLTQIKSLKLWELSNLLHIWEQCYK 108 (296)
Q Consensus 31 ~l~~L~~L~l~~~~~~~~~--~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~ 108 (296)
.+++|+.|++++|.+...+ +..+..+++|++|++++|.+..+. .....+++|+.|.++++......+..
T Consensus 348 ~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~------~~~~~l~~L~~L~l~~n~l~~~~~~~--- 418 (606)
T 3vq2_A 348 ALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMS------ANFMGLEELQHLDFQHSTLKRVTEFS--- 418 (606)
T ss_dssp CCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEEC------CCCTTCTTCCEEECTTSEEESTTTTT---
T ss_pred cCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccch------hhccCCCCCCeeECCCCccCCccChh---
Confidence 4556666666555554331 234556666666666666544432 22345778888888776543332211
Q ss_pred ccccCCCccEEEeccCccccccccCccccCCccEEEeccCcCccccCCcccccCCCCccEEEEeCccccceecccccccc
Q 022501 109 LDSVFQNLETLEIWWCNNLINLVPSSASFENLTTLEVSYCQRLKNLVSSSTAKSLVCLMKLRIDGCKLMTEIISSEGDVE 188 (296)
Q Consensus 109 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 188 (296)
.+..+++|+.|++++|......+..+..+++|++|++++|.......+ ..+..+++|++|++++|...+..+..
T Consensus 419 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~----- 492 (606)
T 3vq2_A 419 AFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLS-NVFANTTNLTFLDLSKCQLEQISWGV----- 492 (606)
T ss_dssp TTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEEC-SCCTTCTTCCEEECTTSCCCEECTTT-----
T ss_pred hhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchH-HhhccCCCCCEEECCCCcCCccChhh-----
Confidence 155678888888888765555666677788889998887653322222 24577888999999888543322222
Q ss_pred cccccCCccceeeccCCcCcceecCCCccccCCCccEEeeccCCccccccCCcccCC-CcceEEcccC
Q 022501 189 EDEIVFSRLKWLSLECLDSLTSFCSGNCTFKFPSLEDLFVIDCPKMMIFSFGVLSTP-RLREVRKNWG 255 (296)
Q Consensus 189 ~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~-~L~~l~l~~~ 255 (296)
+..+++|++|+++++. ++.+.+.. +..+++|++|++++|. ++.+|..+..++ +|+.++++.+
T Consensus 493 --~~~l~~L~~L~Ls~N~-l~~~~~~~-~~~l~~L~~L~l~~N~-l~~~p~~~~~l~~~L~~l~l~~N 555 (606)
T 3vq2_A 493 --FDTLHRLQLLNMSHNN-LLFLDSSH-YNQLYSLSTLDCSFNR-IETSKGILQHFPKSLAFFNLTNN 555 (606)
T ss_dssp --TTTCTTCCEEECCSSC-CSCEEGGG-TTTCTTCCEEECTTSC-CCCEESCGGGSCTTCCEEECCSC
T ss_pred --hcccccCCEEECCCCc-CCCcCHHH-ccCCCcCCEEECCCCc-CcccCHhHhhhcccCcEEEccCC
Confidence 3348899999999874 56654332 4678999999999974 778888877776 5999999743
No 28
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.76 E-value=3.1e-17 Score=142.76 Aligned_cols=56 Identities=18% Similarity=0.217 Sum_probs=28.8
Q ss_pred CCccceeeccCCcCcceecCCCccccCCCccEEeeccCCccccccCCcccCCCcceEEcccC
Q 022501 194 FSRLKWLSLECLDSLTSFCSGNCTFKFPSLEDLFVIDCPKMMIFSFGVLSTPRLREVRKNWG 255 (296)
Q Consensus 194 ~~~L~~L~l~~~~~L~~l~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~l~l~~~ 255 (296)
+++|++|+++++. ++.++ .+..+++|++|++++| .++.++. +..+++|+.++++.+
T Consensus 242 l~~L~~L~l~~n~-l~~~~---~~~~l~~L~~L~l~~n-~l~~~~~-~~~l~~L~~L~L~~n 297 (347)
T 4fmz_A 242 LSQLTWLEIGTNQ-ISDIN---AVKDLTKLKMLNVGSN-QISDISV-LNNLSQLNSLFLNNN 297 (347)
T ss_dssp CTTCCEEECCSSC-CCCCG---GGTTCTTCCEEECCSS-CCCCCGG-GGGCTTCSEEECCSS
T ss_pred CCCCCEEECCCCc-cCCCh---hHhcCCCcCEEEccCC-ccCCChh-hcCCCCCCEEECcCC
Confidence 4555555555542 33331 1345566666666665 3444432 335566666666543
No 29
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.76 E-value=2.2e-17 Score=146.17 Aligned_cols=134 Identities=12% Similarity=0.041 Sum_probs=103.5
Q ss_pred ccccceEEEeeccCccccccCCCCCCcCCCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCccccccCC
Q 022501 5 VIANLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGM 84 (296)
Q Consensus 5 ~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 84 (296)
.+++++.|+++++.+..++...+. .+++|+.|++++|.+..++...+..+++|++|++++|.+..+.+ .....
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~--~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-----~~~~~ 115 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLD--SFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPP-----HVFQN 115 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHH--HCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCT-----TTTTT
T ss_pred ccCCceEEEecCCchhhCChhHhc--ccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCH-----HHhcC
Confidence 368999999999999988655566 89999999999999998887788999999999999997766533 12355
Q ss_pred ccccceeEecccccccccccccCcccccCCCccEEEeccCccccccccCccccCCccEEEeccCc
Q 022501 85 LTQIKSLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCNNLINLVPSSASFENLTTLEVSYCQ 149 (296)
Q Consensus 85 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~ 149 (296)
+++|++|.++++. +..++... +..+++|++|+++++......+..+..+++|++|+++++.
T Consensus 116 l~~L~~L~L~~n~-l~~l~~~~---~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 176 (390)
T 3o6n_A 116 VPLLTVLVLERND-LSSLPRGI---FHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR 176 (390)
T ss_dssp CTTCCEEECCSSC-CCCCCTTT---TTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSC
T ss_pred CCCCCEEECCCCc-cCcCCHHH---hcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCc
Confidence 8999999999874 44554431 3568899999999875433333446678888888888753
No 30
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.75 E-value=7.9e-18 Score=155.36 Aligned_cols=110 Identities=20% Similarity=0.240 Sum_probs=62.4
Q ss_pred cccceEEEeeccCccccccCCCCCCcCCCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCccccccCCc
Q 022501 6 IANLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGML 85 (296)
Q Consensus 6 l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 85 (296)
+++|++|++++|+++++.+..+. .+++|++|++++|.+..+++..++++++|++|++++|.+..+.. ......+
T Consensus 49 l~~L~~L~Ls~n~i~~~~~~~~~--~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~----~~~~~~l 122 (549)
T 2z81_A 49 CANLQVLILKSSRINTIEGDAFY--SLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGV----TSLFPNL 122 (549)
T ss_dssp CTTCCEEECTTSCCCEECTTTTT--TCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCS----SCSCTTC
T ss_pred CCcccEEECCCCCcCccChhhcc--ccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccch----hhhhhcc
Confidence 55666666666666666555555 66677777776666666666666667777777777665543211 1123446
Q ss_pred cccceeEecccccccccccccCcccccCCCccEEEeccC
Q 022501 86 TQIKSLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWC 124 (296)
Q Consensus 86 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~ 124 (296)
++|++|.++++..+..++... +..+++|++|+++++
T Consensus 123 ~~L~~L~L~~n~~~~~~~~~~---~~~l~~L~~L~L~~n 158 (549)
T 2z81_A 123 TNLQTLRIGNVETFSEIRRID---FAGLTSLNELEIKAL 158 (549)
T ss_dssp TTCCEEEEEESSSCCEECTTT---TTTCCEEEEEEEEET
T ss_pred CCccEEECCCCccccccCHhh---hhcccccCeeeccCC
Confidence 666666666655444433211 334455555555544
No 31
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.74 E-value=1.3e-17 Score=145.17 Aligned_cols=216 Identities=17% Similarity=0.179 Sum_probs=132.7
Q ss_pred ccccceEEEeeccCccccccCCCCCCcCCCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCccccccCC
Q 022501 5 VIANLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGM 84 (296)
Q Consensus 5 ~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 84 (296)
.+++|++|+++++.++.++ .+. .+++|++|++++|.+..++. +..+++|++|++.+|......+ . ...
T Consensus 86 ~l~~L~~L~L~~n~i~~~~--~~~--~l~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~~--~----~~~ 153 (347)
T 4fmz_A 86 NLVKLTNLYIGTNKITDIS--ALQ--NLTNLRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLS--P----LSN 153 (347)
T ss_dssp TCTTCCEEECCSSCCCCCG--GGT--TCTTCSEEECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCCG--G----GTT
T ss_pred cCCcCCEEEccCCcccCch--HHc--CCCcCCEEECcCCcccCchh--hccCCceeEEECCCCCCccccc--c----hhh
Confidence 3678888888888777753 244 77888888888877776664 6677777777777773211111 0 223
Q ss_pred ccccceeEeccccc---------------------ccccccccCcccccCCCccEEEeccCccccccccCccccCCccEE
Q 022501 85 LTQIKSLKLWELSN---------------------LLHIWEQCYKLDSVFQNLETLEIWWCNNLINLVPSSASFENLTTL 143 (296)
Q Consensus 85 ~~~L~~L~l~~~~~---------------------l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L 143 (296)
+++|++|.++++.. +..++. +..+++|+.+.+.++. +...+. +..+++|++|
T Consensus 154 l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-----~~~l~~L~~L~l~~n~-l~~~~~-~~~~~~L~~L 226 (347)
T 4fmz_A 154 MTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIEDISP-----LASLTSLHYFTAYVNQ-ITDITP-VANMTRLNSL 226 (347)
T ss_dssp CTTCCEEECCSSCCCCCGGGGGCTTCSEEECTTSCCCCCGG-----GGGCTTCCEEECCSSC-CCCCGG-GGGCTTCCEE
T ss_pred CCCCcEEEecCCCcCCchhhccCCCCCEEEccCCccccccc-----ccCCCccceeecccCC-CCCCch-hhcCCcCCEE
Confidence 44555555544321 111111 3344555555555542 222222 4456777888
Q ss_pred EeccCcCccccCCcccccCCCCccEEEEeCccccceecccccccccccccCCccceeeccCCcCcceecCCCccccCCCc
Q 022501 144 EVSYCQRLKNLVSSSTAKSLVCLMKLRIDGCKLMTEIISSEGDVEEDEIVFSRLKWLSLECLDSLTSFCSGNCTFKFPSL 223 (296)
Q Consensus 144 ~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~L 223 (296)
++++|. +.+.+ .+..+++|++|++++|. +..+. .+..+++|++|+++++ .+++++ .+..+++|
T Consensus 227 ~l~~n~-l~~~~---~~~~l~~L~~L~l~~n~-l~~~~--------~~~~l~~L~~L~l~~n-~l~~~~---~~~~l~~L 289 (347)
T 4fmz_A 227 KIGNNK-ITDLS---PLANLSQLTWLEIGTNQ-ISDIN--------AVKDLTKLKMLNVGSN-QISDIS---VLNNLSQL 289 (347)
T ss_dssp ECCSSC-CCCCG---GGTTCTTCCEEECCSSC-CCCCG--------GGTTCTTCCEEECCSS-CCCCCG---GGGGCTTC
T ss_pred EccCCc-cCCCc---chhcCCCCCEEECCCCc-cCCCh--------hHhcCCCcCEEEccCC-ccCCCh---hhcCCCCC
Confidence 877753 44433 25677888888888764 33331 2344889999999887 356653 25678899
Q ss_pred cEEeeccCCccccccCCcccCCCcceEEcccCC
Q 022501 224 EDLFVIDCPKMMIFSFGVLSTPRLREVRKNWGL 256 (296)
Q Consensus 224 ~~L~l~~c~~l~~~~~~~~~~~~L~~l~l~~~~ 256 (296)
+.|++++|......+..+..+++|+.++++.+.
T Consensus 290 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~ 322 (347)
T 4fmz_A 290 NSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNH 322 (347)
T ss_dssp SEEECCSSCCCGGGHHHHHTCTTCSEEECCSSS
T ss_pred CEEECcCCcCCCcChhHhhccccCCEEEccCCc
Confidence 999999986444445555678899999987554
No 32
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.74 E-value=1.1e-16 Score=138.35 Aligned_cols=225 Identities=13% Similarity=0.077 Sum_probs=165.9
Q ss_pred ccccceEEEeeccCccccccCCCCCCcCCCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCccccccCC
Q 022501 5 VIANLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGM 84 (296)
Q Consensus 5 ~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 84 (296)
.+++|++|+++++.++++.+..+. .+++|++|++++|.+..+|... .++|++|++++|.+..+.+ .....
T Consensus 74 ~l~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~Ls~n~l~~l~~~~---~~~L~~L~l~~n~l~~~~~-----~~~~~ 143 (330)
T 1xku_A 74 NLKNLHTLILINNKISKISPGAFA--PLVKLERLYLSKNQLKELPEKM---PKTLQELRVHENEITKVRK-----SVFNG 143 (330)
T ss_dssp TCTTCCEEECCSSCCCCBCTTTTT--TCTTCCEEECCSSCCSBCCSSC---CTTCCEEECCSSCCCBBCH-----HHHTT
T ss_pred cCCCCCEEECCCCcCCeeCHHHhc--CCCCCCEEECCCCcCCccChhh---cccccEEECCCCcccccCH-----hHhcC
Confidence 478999999999999998777777 8999999999999998888643 3799999999997776533 12345
Q ss_pred ccccceeEecccccccccccccCcccccCCCccEEEeccCccccccccCccccCCccEEEeccCcCccccCCcccccCCC
Q 022501 85 LTQIKSLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCNNLINLVPSSASFENLTTLEVSYCQRLKNLVSSSTAKSLV 164 (296)
Q Consensus 85 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~ 164 (296)
+++|+.|.++++..-. ... ....+..+++|+.|+++++ .++.++... +++|++|+++++. +....+. .+..++
T Consensus 144 l~~L~~L~l~~n~l~~-~~~-~~~~~~~l~~L~~L~l~~n-~l~~l~~~~--~~~L~~L~l~~n~-l~~~~~~-~~~~l~ 216 (330)
T 1xku_A 144 LNQMIVVELGTNPLKS-SGI-ENGAFQGMKKLSYIRIADT-NITTIPQGL--PPSLTELHLDGNK-ITKVDAA-SLKGLN 216 (330)
T ss_dssp CTTCCEEECCSSCCCG-GGB-CTTGGGGCTTCCEEECCSS-CCCSCCSSC--CTTCSEEECTTSC-CCEECTG-GGTTCT
T ss_pred CccccEEECCCCcCCc-cCc-ChhhccCCCCcCEEECCCC-ccccCCccc--cccCCEEECCCCc-CCccCHH-HhcCCC
Confidence 8999999999865421 101 1112667899999999986 466666655 4899999999864 5555332 467889
Q ss_pred CccEEEEeCccccceecccccccccccccCCccceeeccCCcCcceecCCCccccCCCccEEeeccCCccccccCCcc--
Q 022501 165 CLMKLRIDGCKLMTEIISSEGDVEEDEIVFSRLKWLSLECLDSLTSFCSGNCTFKFPSLEDLFVIDCPKMMIFSFGVL-- 242 (296)
Q Consensus 165 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~-- 242 (296)
+|++|++++|.. ..+... .+..+++|++|+++++. ++.++.. +..+++|++|++++| .++.++....
T Consensus 217 ~L~~L~Ls~n~l-~~~~~~------~~~~l~~L~~L~L~~N~-l~~lp~~--l~~l~~L~~L~l~~N-~i~~~~~~~f~~ 285 (330)
T 1xku_A 217 NLAKLGLSFNSI-SAVDNG------SLANTPHLRELHLNNNK-LVKVPGG--LADHKYIQVVYLHNN-NISAIGSNDFCP 285 (330)
T ss_dssp TCCEEECCSSCC-CEECTT------TGGGSTTCCEEECCSSC-CSSCCTT--TTTCSSCCEEECCSS-CCCCCCTTSSSC
T ss_pred CCCEEECCCCcC-ceeChh------hccCCCCCCEEECCCCc-CccCChh--hccCCCcCEEECCCC-cCCccChhhcCC
Confidence 999999999864 333221 23448999999999974 6766553 467899999999997 4767665432
Q ss_pred -----cCCCcceEEcccCCc
Q 022501 243 -----STPRLREVRKNWGLD 257 (296)
Q Consensus 243 -----~~~~L~~l~l~~~~~ 257 (296)
..++++.+++.++..
T Consensus 286 ~~~~~~~~~l~~l~l~~N~~ 305 (330)
T 1xku_A 286 PGYNTKKASYSGVSLFSNPV 305 (330)
T ss_dssp SSCCTTSCCCSEEECCSSSS
T ss_pred cccccccccccceEeecCcc
Confidence 236788898875543
No 33
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.73 E-value=1.7e-16 Score=131.01 Aligned_cols=198 Identities=13% Similarity=0.072 Sum_probs=135.2
Q ss_pred CCccEEEeccCCCCccChHHHhcCCcccEEEEeccc-cceEeecCccccccCCccccceeEecccccccccccccCcccc
Q 022501 33 QNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSS-YKEIFSNGEVEKQAGMLTQIKSLKLWELSNLLHIWEQCYKLDS 111 (296)
Q Consensus 33 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~ 111 (296)
++|+.|++++|.+..++...+..+++|++|++++|. +..+.+. ....+++|++|.++++..+..++... +.
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~-----~f~~l~~L~~L~l~~~n~l~~i~~~~---f~ 102 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESH-----SFYNLSKVTHIEIRNTRNLTYIDPDA---LK 102 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTT-----TEESCTTCCEEEEEEETTCCEECTTS---EE
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHh-----HcCCCcCCcEEECCCCCCeeEcCHHH---hC
Confidence 377888888877777776667778888888888775 5555321 11347788888887755666654322 45
Q ss_pred cCCCccEEEeccCccccccccCccccCCcc---EEEeccCcCccccCCcccccCCCCcc-EEEEeCccccceeccccccc
Q 022501 112 VFQNLETLEIWWCNNLINLVPSSASFENLT---TLEVSYCQRLKNLVSSSTAKSLVCLM-KLRIDGCKLMTEIISSEGDV 187 (296)
Q Consensus 112 ~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~---~L~l~~c~~l~~~~~~~~~~~l~~L~-~L~l~~~~~~~~~~~~~~~~ 187 (296)
.+++|+.|+++++. +..++. +..+++|+ .|+++++..++.++.. .+..+++|+ +|+++++. ++.++....
T Consensus 103 ~l~~L~~L~l~~n~-l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~-~~~~l~~L~~~L~l~~n~-l~~i~~~~~-- 176 (239)
T 2xwt_C 103 ELPLLKFLGIFNTG-LKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVN-AFQGLCNETLTLKLYNNG-FTSVQGYAF-- 176 (239)
T ss_dssp CCTTCCEEEEEEEC-CCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTT-TTTTTBSSEEEEECCSCC-CCEECTTTT--
T ss_pred CCCCCCEEeCCCCC-Cccccc-cccccccccccEEECCCCcchhhcCcc-cccchhcceeEEEcCCCC-CcccCHhhc--
Confidence 67788888888753 455554 55566776 8888876566666543 356778888 88888764 334444222
Q ss_pred ccccccCCccceeeccCCcCcceecCCCccccC-CCccEEeeccCCccccccCCcccCCCcceEEcc
Q 022501 188 EEDEIVFSRLKWLSLECLDSLTSFCSGNCTFKF-PSLEDLFVIDCPKMMIFSFGVLSTPRLREVRKN 253 (296)
Q Consensus 188 ~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~-~~L~~L~l~~c~~l~~~~~~~~~~~~L~~l~l~ 253 (296)
. .++|++|++++++.++.++... +..+ ++|+.|+++++ .++.+|.. .+++|+.|++.
T Consensus 177 ----~-~~~L~~L~L~~n~~l~~i~~~~-~~~l~~~L~~L~l~~N-~l~~l~~~--~~~~L~~L~l~ 234 (239)
T 2xwt_C 177 ----N-GTKLDAVYLNKNKYLTVIDKDA-FGGVYSGPSLLDVSQT-SVTALPSK--GLEHLKELIAR 234 (239)
T ss_dssp ----T-TCEEEEEECTTCTTCCEECTTT-TTTCSBCCSEEECTTC-CCCCCCCT--TCTTCSEEECT
T ss_pred ----C-CCCCCEEEcCCCCCcccCCHHH-hhccccCCcEEECCCC-ccccCChh--HhccCceeecc
Confidence 2 3688889988876678776544 4566 88999999885 57777765 66788888875
No 34
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.73 E-value=7e-17 Score=150.68 Aligned_cols=133 Identities=12% Similarity=0.041 Sum_probs=105.2
Q ss_pred cccceEEEeeccCccccccCCCCCCcCCCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCccccccCCc
Q 022501 6 IANLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGML 85 (296)
Q Consensus 6 l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 85 (296)
+++++.|+++++.+..+++..+. .+++|+.|++++|.+..+++..+..+++|++|++++|.+..+.+ ...+.+
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-----~~~~~l 122 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLD--SFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPP-----HVFQNV 122 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHH--HCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCT-----TTTTTC
T ss_pred CCCceEEEeeCCCCCCcCHHHHc--cCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCH-----HHHcCC
Confidence 67889999999999888665566 89999999999999998887788999999999999998776533 123568
Q ss_pred cccceeEecccccccccccccCcccccCCCccEEEeccCccccccccCccccCCccEEEeccCc
Q 022501 86 TQIKSLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCNNLINLVPSSASFENLTTLEVSYCQ 149 (296)
Q Consensus 86 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~ 149 (296)
++|++|.++++. +..++... +..+++|+.|+++++......+..+..+++|++|+++++.
T Consensus 123 ~~L~~L~L~~n~-l~~l~~~~---~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~ 182 (597)
T 3oja_B 123 PLLTVLVLERND-LSSLPRGI---FHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR 182 (597)
T ss_dssp TTCCEEECCSSC-CCCCCTTT---TTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSC
T ss_pred CCCCEEEeeCCC-CCCCCHHH---hccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCC
Confidence 999999999874 44554431 4678999999999975444444457778999999998764
No 35
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.73 E-value=1.7e-16 Score=148.15 Aligned_cols=225 Identities=17% Similarity=0.138 Sum_probs=138.4
Q ss_pred ccccceEEEeeccCccccccCCCCCCcCCCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCccccccCC
Q 022501 5 VIANLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGM 84 (296)
Q Consensus 5 ~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 84 (296)
.+++|++|+++++.+..++ .++ .+++|+.|++.+|....+|. + .+++|++|++.+|......+ ...
T Consensus 283 ~l~~L~~L~l~~~~~~~l~--~l~--~~~~L~~L~l~~n~l~~lp~-~--~l~~L~~L~l~~n~~~~~~~-------~~~ 348 (606)
T 3vq2_A 283 CLANVSAMSLAGVSIKYLE--DVP--KHFKWQSLSIIRCQLKQFPT-L--DLPFLKSLTLTMNKGSISFK-------KVA 348 (606)
T ss_dssp GGTTCSEEEEESCCCCCCC--CCC--TTCCCSEEEEESCCCSSCCC-C--CCSSCCEEEEESCSSCEECC-------CCC
T ss_pred cCCCCCEEEecCccchhhh--hcc--ccccCCEEEcccccCccccc-C--CCCccceeeccCCcCccchh-------hcc
Confidence 3678888888888777763 455 78888888888888877772 2 77888888888773222211 123
Q ss_pred ccccceeEeccccc-------------------------ccccccccCcccccCCCccEEEeccCccccccc-cCccccC
Q 022501 85 LTQIKSLKLWELSN-------------------------LLHIWEQCYKLDSVFQNLETLEIWWCNNLINLV-PSSASFE 138 (296)
Q Consensus 85 ~~~L~~L~l~~~~~-------------------------l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~-~~~~~l~ 138 (296)
+++|++|+++++.. +..++.. +..+++|+.|+++++......+ ..+..++
T Consensus 349 l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~----~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~ 424 (606)
T 3vq2_A 349 LPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSAN----FMGLEELQHLDFQHSTLKRVTEFSAFLSLE 424 (606)
T ss_dssp CTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCC----CTTCTTCCEEECTTSEEESTTTTTTTTTCT
T ss_pred CCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccchhh----ccCCCCCCeeECCCCccCCccChhhhhccc
Confidence 44555555544321 2222211 4455666666666654333333 2445566
Q ss_pred CccEEEeccCcCccccCCcccccCCCCccEEEEeCccccce-ecccccccccccccCCccceeeccCCcCcceecCCCcc
Q 022501 139 NLTTLEVSYCQRLKNLVSSSTAKSLVCLMKLRIDGCKLMTE-IISSEGDVEEDEIVFSRLKWLSLECLDSLTSFCSGNCT 217 (296)
Q Consensus 139 ~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~ 217 (296)
+|++|++++|.. ....+ ..+..+++|++|++++|..... ++. .+..+++|++|+++++. ++.+.... +
T Consensus 425 ~L~~L~l~~n~l-~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~-------~~~~l~~L~~L~Ls~n~-l~~~~~~~-~ 493 (606)
T 3vq2_A 425 KLLYLDISYTNT-KIDFD-GIFLGLTSLNTLKMAGNSFKDNTLSN-------VFANTTNLTFLDLSKCQ-LEQISWGV-F 493 (606)
T ss_dssp TCCEEECTTSCC-EECCT-TTTTTCTTCCEEECTTCEEGGGEECS-------CCTTCTTCCEEECTTSC-CCEECTTT-T
T ss_pred cCCEEECcCCCC-Cccch-hhhcCCCCCCEEECCCCcCCCcchHH-------hhccCCCCCEEECCCCc-CCccChhh-h
Confidence 677777766542 22222 1345667777777777654332 222 23347888888888874 66665433 4
Q ss_pred ccCCCccEEeeccCCccccccCCcccCCCcceEEcccCCcc
Q 022501 218 FKFPSLEDLFVIDCPKMMIFSFGVLSTPRLREVRKNWGLDK 258 (296)
Q Consensus 218 ~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~l~l~~~~~~ 258 (296)
..+++|++|++++|......|..+..+++|+.|+++.+...
T Consensus 494 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 534 (606)
T 3vq2_A 494 DTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE 534 (606)
T ss_dssp TTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC
T ss_pred cccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc
Confidence 67889999999988544445777778889999999766543
No 36
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.72 E-value=2e-16 Score=135.30 Aligned_cols=222 Identities=16% Similarity=0.144 Sum_probs=164.1
Q ss_pred eEEEeeccCccccccCCCCCCcCCCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCccccccCCccccc
Q 022501 10 EELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGMLTQIK 89 (296)
Q Consensus 10 ~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~ 89 (296)
+.++.++++++.++ . . ..++|++|++++|.+..+|...++++++|++|++++|.+...... ......+++|+
T Consensus 10 ~~l~c~~~~l~~ip-~--~--~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~---~~~~~~~~~L~ 81 (306)
T 2z66_A 10 TEIRCNSKGLTSVP-T--G--IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCC---SQSDFGTTSLK 81 (306)
T ss_dssp TEEECCSSCCSSCC-S--C--CCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEE---EHHHHSCSCCC
T ss_pred CEEEcCCCCcccCC-C--C--CCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCc---ccccccccccC
Confidence 46777777777764 2 2 457999999999999999988889999999999999987654211 11223489999
Q ss_pred eeEecccccccccccccCcccccCCCccEEEeccCcccccccc--CccccCCccEEEeccCcCccccCCcccccCCCCcc
Q 022501 90 SLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCNNLINLVP--SSASFENLTTLEVSYCQRLKNLVSSSTAKSLVCLM 167 (296)
Q Consensus 90 ~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~--~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~ 167 (296)
+|+++++. +..++.. +..+++|++|+++++. +..++. .+..+++|++|+++++. +....+. .+..+++|+
T Consensus 82 ~L~Ls~n~-i~~l~~~----~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~-~~~~l~~L~ 153 (306)
T 2z66_A 82 YLDLSFNG-VITMSSN----FLGLEQLEHLDFQHSN-LKQMSEFSVFLSLRNLIYLDISHTH-TRVAFNG-IFNGLSSLE 153 (306)
T ss_dssp EEECCSCS-EEEEEEE----EETCTTCCEEECTTSE-EESSTTTTTTTTCTTCCEEECTTSC-CEECSTT-TTTTCTTCC
T ss_pred EEECCCCc-cccChhh----cCCCCCCCEEECCCCc-ccccccchhhhhccCCCEEECCCCc-CCccchh-hcccCcCCC
Confidence 99999875 3445444 6678999999999864 444443 56778999999999875 4433322 467789999
Q ss_pred EEEEeCccccc-eecccccccccccccCCccceeeccCCcCcceecCCCccccCCCccEEeeccCCccccccC-CcccCC
Q 022501 168 KLRIDGCKLMT-EIISSEGDVEEDEIVFSRLKWLSLECLDSLTSFCSGNCTFKFPSLEDLFVIDCPKMMIFSF-GVLSTP 245 (296)
Q Consensus 168 ~L~l~~~~~~~-~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~L~~L~l~~c~~l~~~~~-~~~~~~ 245 (296)
+|++++|.... .++.. +..+++|++|+++++. ++.+.... +..+++|++|++++|. ++.++. .+..++
T Consensus 154 ~L~l~~n~l~~~~~~~~-------~~~l~~L~~L~Ls~n~-l~~~~~~~-~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~ 223 (306)
T 2z66_A 154 VLKMAGNSFQENFLPDI-------FTELRNLTFLDLSQCQ-LEQLSPTA-FNSLSSLQVLNMSHNN-FFSLDTFPYKCLN 223 (306)
T ss_dssp EEECTTCEEGGGEECSC-------CTTCTTCCEEECTTSC-CCEECTTT-TTTCTTCCEEECTTSC-CSBCCSGGGTTCT
T ss_pred EEECCCCccccccchhH-------HhhCcCCCEEECCCCC-cCCcCHHH-hcCCCCCCEEECCCCc-cCccChhhccCcc
Confidence 99999986543 23332 3348999999999974 67765443 5678999999999975 555544 456789
Q ss_pred CcceEEcccCCc
Q 022501 246 RLREVRKNWGLD 257 (296)
Q Consensus 246 ~L~~l~l~~~~~ 257 (296)
+|+.|+++.+..
T Consensus 224 ~L~~L~L~~N~l 235 (306)
T 2z66_A 224 SLQVLDYSLNHI 235 (306)
T ss_dssp TCCEEECTTSCC
T ss_pred cCCEeECCCCCC
Confidence 999999986543
No 37
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.71 E-value=8.7e-17 Score=152.16 Aligned_cols=156 Identities=19% Similarity=0.206 Sum_probs=103.4
Q ss_pred ccceEEEeeccCccccccCCCCCCcCCCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCccccccCCcc
Q 022501 7 ANLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGMLT 86 (296)
Q Consensus 7 ~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 86 (296)
+++++|+++++.++++.+..+. .+++|++|++++|.+..+++..++++++|++|++++|.+..+.+ .....++
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~-----~~~~~l~ 97 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAANFT--RYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSD-----KTFAFCT 97 (680)
T ss_dssp TTCSEEECCSSCCCCCCGGGGG--GGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCT-----TTTTTCT
T ss_pred CCCcEEECCCCCCCCcCHHHHh--CCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccCh-----hhhccCC
Confidence 5788999998888887666666 78899999998888887777788888999999998887665432 1234578
Q ss_pred ccceeEecccccccccccccCcccccCCCccEEEeccCccccccccCccccCCccEEEeccCcCccccCCccc-ccCCCC
Q 022501 87 QIKSLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCNNLINLVPSSASFENLTTLEVSYCQRLKNLVSSST-AKSLVC 165 (296)
Q Consensus 87 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~-~~~l~~ 165 (296)
+|++|.++++. +..++... +..+++|++|+++++......+..+..+++|++|+++++. ++....... ...+++
T Consensus 98 ~L~~L~L~~n~-l~~~~~~~---~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~~~ 172 (680)
T 1ziw_A 98 NLTELHLMSNS-IQKIKNNP---FVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNK-IQALKSEELDIFANSS 172 (680)
T ss_dssp TCSEEECCSSC-CCCCCSCT---TTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSC-CCCBCHHHHGGGTTCE
T ss_pred CCCEEECCCCc-cCccChhH---ccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCc-ccccCHHHhhcccccc
Confidence 88888888764 33333221 5567778888887764433334445567777777777653 333322111 123456
Q ss_pred ccEEEEeCc
Q 022501 166 LMKLRIDGC 174 (296)
Q Consensus 166 L~~L~l~~~ 174 (296)
|++|++++|
T Consensus 173 L~~L~L~~n 181 (680)
T 1ziw_A 173 LKKLELSSN 181 (680)
T ss_dssp ESEEECTTC
T ss_pred ccEEECCCC
Confidence 666666665
No 38
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.71 E-value=5.6e-16 Score=140.30 Aligned_cols=60 Identities=20% Similarity=0.332 Sum_probs=31.8
Q ss_pred cccceEEEeeccCccccccCCCCCCcCCCccEEEeccCCCCccChHHHhcCCcccEEEEeccccce
Q 022501 6 IANLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKE 71 (296)
Q Consensus 6 l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 71 (296)
+++|++|+++++.++++.+ +. .+++|++|++++|.+..+++ +.++++|++|++.+|.+..
T Consensus 67 l~~L~~L~Ls~n~l~~~~~--~~--~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~ 126 (466)
T 1o6v_A 67 LNNLTQINFSNNQLTDITP--LK--NLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITD 126 (466)
T ss_dssp CTTCCEEECCSSCCCCCGG--GT--TCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC
T ss_pred hcCCCEEECCCCccCCchh--hh--ccccCCEEECCCCccccChh--hcCCCCCCEEECCCCCCCC
Confidence 5666666666666665532 33 45555555555555544443 4445555555555544433
No 39
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.70 E-value=1.1e-15 Score=129.83 Aligned_cols=194 Identities=18% Similarity=0.214 Sum_probs=111.5
Q ss_pred cccceEEEeeccCccccccCCCCCCcCCCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCccccccCCc
Q 022501 6 IANLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGML 85 (296)
Q Consensus 6 l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 85 (296)
+++++++++++++++.++ .. ..++++.|++++|.+..++...+..+++|++|++++|.+..+... ..+
T Consensus 9 l~~l~~l~~~~~~l~~ip-~~----~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-------~~l 76 (290)
T 1p9a_G 9 VASHLEVNCDKRNLTALP-PD----LPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-------GTL 76 (290)
T ss_dssp STTCCEEECTTSCCSSCC-SC----CCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-------SCC
T ss_pred cCCccEEECCCCCCCcCC-CC----CCCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-------CCC
Confidence 677888888888777764 21 346788888888888877766778888888888888877665432 236
Q ss_pred cccceeEecccccccccccccCcccccCCCccEEEeccCcccccccc-CccccCCccEEEeccCcCccccCCcccccCCC
Q 022501 86 TQIKSLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCNNLINLVP-SSASFENLTTLEVSYCQRLKNLVSSSTAKSLV 164 (296)
Q Consensus 86 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~ 164 (296)
++|+.|.++++. +..++.. +..+++|+.|+++++ .++.+++ .+..+++|++|+++++ .+..++.. .+..
T Consensus 77 ~~L~~L~Ls~N~-l~~l~~~----~~~l~~L~~L~l~~N-~l~~l~~~~~~~l~~L~~L~L~~N-~l~~~~~~-~~~~-- 146 (290)
T 1p9a_G 77 PVLGTLDLSHNQ-LQSLPLL----GQTLPALTVLDVSFN-RLTSLPLGALRGLGELQELYLKGN-ELKTLPPG-LLTP-- 146 (290)
T ss_dssp TTCCEEECCSSC-CSSCCCC----TTTCTTCCEEECCSS-CCCCCCSSTTTTCTTCCEEECTTS-CCCCCCTT-TTTT--
T ss_pred CcCCEEECCCCc-CCcCchh----hccCCCCCEEECCCC-cCcccCHHHHcCCCCCCEEECCCC-CCCccChh-hccc--
Confidence 667777666542 3333332 344555555555553 2333332 2344455555555543 23332211 1233
Q ss_pred CccEEEEeCccccceecccccccccccccCCccceeeccCCcCcceecCCCccccCCCccEEeeccCCccccccCCcccC
Q 022501 165 CLMKLRIDGCKLMTEIISSEGDVEEDEIVFSRLKWLSLECLDSLTSFCSGNCTFKFPSLEDLFVIDCPKMMIFSFGVLST 244 (296)
Q Consensus 165 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~ 244 (296)
+++|+.|+++++ +++.++.+. +..+++|+.|+++++ .++.+|.++...
T Consensus 147 -----------------------------l~~L~~L~L~~N-~l~~l~~~~-~~~l~~L~~L~L~~N-~l~~ip~~~~~~ 194 (290)
T 1p9a_G 147 -----------------------------TPKLEKLSLANN-NLTELPAGL-LNGLENLDTLLLQEN-SLYTIPKGFFGS 194 (290)
T ss_dssp -----------------------------CTTCCEEECTTS-CCSCCCTTT-TTTCTTCCEEECCSS-CCCCCCTTTTTT
T ss_pred -----------------------------ccCCCEEECCCC-cCCccCHHH-hcCcCCCCEEECCCC-cCCccChhhccc
Confidence 455555555543 244444322 334566666666664 455666666566
Q ss_pred CCcceEEcc
Q 022501 245 PRLREVRKN 253 (296)
Q Consensus 245 ~~L~~l~l~ 253 (296)
++|+.+++.
T Consensus 195 ~~L~~l~L~ 203 (290)
T 1p9a_G 195 HLLPFAFLH 203 (290)
T ss_dssp CCCSEEECC
T ss_pred ccCCeEEeC
Confidence 666666665
No 40
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.70 E-value=4.8e-16 Score=150.58 Aligned_cols=104 Identities=16% Similarity=0.076 Sum_probs=48.0
Q ss_pred CccEEEeccCcCccccCCcccccCCCCccEEEEeCccccceecccccccccccccCCccceeeccCCcCcceecCCCccc
Q 022501 139 NLTTLEVSYCQRLKNLVSSSTAKSLVCLMKLRIDGCKLMTEIISSEGDVEEDEIVFSRLKWLSLECLDSLTSFCSGNCTF 218 (296)
Q Consensus 139 ~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~ 218 (296)
+|+.|+++++. +....+ ..+..+++|+.|++++|......+. .+..+++|++|+++++. ++.+.... +.
T Consensus 267 ~L~~L~Ls~n~-l~~~~~-~~~~~l~~L~~L~L~~n~i~~~~~~-------~~~~l~~L~~L~Ls~N~-l~~~~~~~-~~ 335 (844)
T 3j0a_A 267 SVRHLDLSHGF-VFSLNS-RVFETLKDLKVLNLAYNKINKIADE-------AFYGLDNLQVLNLSYNL-LGELYSSN-FY 335 (844)
T ss_dssp CCCEEECTTCC-CCEECS-CCSSSCCCCCEEEEESCCCCEECTT-------TTTTCSSCCEEEEESCC-CSCCCSCS-CS
T ss_pred CccEEECCCCc-ccccCh-hhhhcCCCCCEEECCCCcCCCCChH-------HhcCCCCCCEEECCCCC-CCccCHHH-hc
Confidence 45555554432 222221 1244556666666665532211111 12335666666666543 33332222 34
Q ss_pred cCCCccEEeeccCCccccccC-CcccCCCcceEEccc
Q 022501 219 KFPSLEDLFVIDCPKMMIFSF-GVLSTPRLREVRKNW 254 (296)
Q Consensus 219 ~~~~L~~L~l~~c~~l~~~~~-~~~~~~~L~~l~l~~ 254 (296)
.+++|+.|+++++ .+..++. .+..+++|+.|+++.
T Consensus 336 ~l~~L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~Ls~ 371 (844)
T 3j0a_A 336 GLPKVAYIDLQKN-HIAIIQDQTFKFLEKLQTLDLRD 371 (844)
T ss_dssp SCTTCCEEECCSC-CCCCCCSSCSCSCCCCCEEEEET
T ss_pred CCCCCCEEECCCC-CCCccChhhhcCCCCCCEEECCC
Confidence 5566666666665 3444333 233455666666644
No 41
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.70 E-value=2.9e-16 Score=135.96 Aligned_cols=221 Identities=12% Similarity=0.091 Sum_probs=156.7
Q ss_pred ccccceEEEeeccCccccccCCCCCCcCCCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCccccccCC
Q 022501 5 VIANLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGM 84 (296)
Q Consensus 5 ~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 84 (296)
.+++|++|++++++++.+.+..+. .+++|++|++++|.+..+|.... ++|++|++.+|.+..+.+ .....
T Consensus 76 ~l~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~L~~n~l~~l~~~~~---~~L~~L~l~~n~i~~~~~-----~~~~~ 145 (332)
T 2ft3_A 76 GLQHLYALVLVNNKISKIHEKAFS--PLRKLQKLYISKNHLVEIPPNLP---SSLVELRIHDNRIRKVPK-----GVFSG 145 (332)
T ss_dssp TCTTCCEEECCSSCCCEECGGGST--TCTTCCEEECCSSCCCSCCSSCC---TTCCEEECCSSCCCCCCS-----GGGSS
T ss_pred CCCCCcEEECCCCccCccCHhHhh--CcCCCCEEECCCCcCCccCcccc---ccCCEEECCCCccCccCH-----hHhCC
Confidence 478999999999999998777777 89999999999999888886432 899999999998765532 12355
Q ss_pred ccccceeEeccccccc--ccccccCcccccCCCccEEEeccCccccccccCccccCCccEEEeccCcCccccCCcccccC
Q 022501 85 LTQIKSLKLWELSNLL--HIWEQCYKLDSVFQNLETLEIWWCNNLINLVPSSASFENLTTLEVSYCQRLKNLVSSSTAKS 162 (296)
Q Consensus 85 ~~~L~~L~l~~~~~l~--~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~ 162 (296)
+++|+.|.++++..-. ..+.. +..+ +|+.|+++++ .+..++... +++|++|+++++ .+....+. .+..
T Consensus 146 l~~L~~L~l~~n~l~~~~~~~~~----~~~l-~L~~L~l~~n-~l~~l~~~~--~~~L~~L~l~~n-~i~~~~~~-~l~~ 215 (332)
T 2ft3_A 146 LRNMNCIEMGGNPLENSGFEPGA----FDGL-KLNYLRISEA-KLTGIPKDL--PETLNELHLDHN-KIQAIELE-DLLR 215 (332)
T ss_dssp CSSCCEEECCSCCCBGGGSCTTS----SCSC-CCSCCBCCSS-BCSSCCSSS--CSSCSCCBCCSS-CCCCCCTT-SSTT
T ss_pred CccCCEEECCCCccccCCCCccc----ccCC-ccCEEECcCC-CCCccCccc--cCCCCEEECCCC-cCCccCHH-HhcC
Confidence 8999999999865321 11111 3344 7889999886 455566554 478999999875 35544332 4567
Q ss_pred CCCccEEEEeCccccceecccccccccccccCCccceeeccCCcCcceecCCCccccCCCccEEeeccCCccccccCCcc
Q 022501 163 LVCLMKLRIDGCKLMTEIISSEGDVEEDEIVFSRLKWLSLECLDSLTSFCSGNCTFKFPSLEDLFVIDCPKMMIFSFGVL 242 (296)
Q Consensus 163 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~ 242 (296)
+++|++|++++|.. ..+... .+..+++|++|+++++. ++.++.. +..+++|++|+++++ .++.++....
T Consensus 216 l~~L~~L~L~~N~l-~~~~~~------~~~~l~~L~~L~L~~N~-l~~lp~~--l~~l~~L~~L~l~~N-~l~~~~~~~~ 284 (332)
T 2ft3_A 216 YSKLYRLGLGHNQI-RMIENG------SLSFLPTLRELHLDNNK-LSRVPAG--LPDLKLLQVVYLHTN-NITKVGVNDF 284 (332)
T ss_dssp CTTCSCCBCCSSCC-CCCCTT------GGGGCTTCCEEECCSSC-CCBCCTT--GGGCTTCCEEECCSS-CCCBCCTTSS
T ss_pred CCCCCEEECCCCcC-CcCChh------HhhCCCCCCEEECCCCc-CeecChh--hhcCccCCEEECCCC-CCCccChhHc
Confidence 88899999988753 322221 23348899999998874 6666553 467889999999886 4666654321
Q ss_pred -------cCCCcceEEcccCC
Q 022501 243 -------STPRLREVRKNWGL 256 (296)
Q Consensus 243 -------~~~~L~~l~l~~~~ 256 (296)
..++|+.+++..+.
T Consensus 285 ~~~~~~~~~~~l~~L~l~~N~ 305 (332)
T 2ft3_A 285 CPVGFGVKRAYYNGISLFNNP 305 (332)
T ss_dssp SCSSCCSSSCCBSEEECCSSS
T ss_pred cccccccccccccceEeecCc
Confidence 13568888887554
No 42
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.70 E-value=5.6e-16 Score=143.50 Aligned_cols=227 Identities=17% Similarity=0.136 Sum_probs=133.7
Q ss_pred cccceEEEeeccCccccccCCCCCCcCCCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCc--------
Q 022501 6 IANLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGE-------- 77 (296)
Q Consensus 6 l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-------- 77 (296)
+++|++|+++++.++.++ ..+. .+ +|++|++.+|....+|. ..+++|++|++.+|.+....+...
T Consensus 281 l~~L~~L~l~~~~l~~l~-~~~~--~~-~L~~L~l~~n~~~~l~~---~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~ 353 (570)
T 2z63_A 281 LTNVSSFSLVSVTIERVK-DFSY--NF-GWQHLELVNCKFGQFPT---LKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLD 353 (570)
T ss_dssp GTTCSEEEEESCEECSCC-BCCS--CC-CCSEEEEESCBCSSCCB---CBCSSCCEEEEESCBSCCBCCCCBCTTCCEEE
T ss_pred cCcccEEEecCccchhhh-hhhc--cC-CccEEeeccCcccccCc---ccccccCEEeCcCCccccccccccCCCCCEEe
Confidence 678888888887777663 3344 45 77777777777666664 355666666666654333222100
Q ss_pred -----------cccccCCccccceeEecccccccccccccCcccccCCCccEEEeccCccccccc-cCccccCCccEEEe
Q 022501 78 -----------VEKQAGMLTQIKSLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCNNLINLV-PSSASFENLTTLEV 145 (296)
Q Consensus 78 -----------~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~-~~~~~l~~L~~L~l 145 (296)
.......+++|++|.++++.. ..++.. +..+++|++|+++++......+ ..+..+++|++|++
T Consensus 354 l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l-~~~~~~----~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l 428 (570)
T 2z63_A 354 LSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGV-ITMSSN----FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDI 428 (570)
T ss_dssp CCSSCCBEEEEEEHHHHTCSCCCEEECCSCSE-EEEEEE----EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEEC
T ss_pred CcCCccCccccccccccccCccCEEECCCCcc-cccccc----ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeC
Confidence 001112344555555554321 222221 4456667777776654333222 23456677777777
Q ss_pred ccCcCccccCCcccccCCCCccEEEEeCcccc-ceecccccccccccccCCccceeeccCCcCcceecCCCccccCCCcc
Q 022501 146 SYCQRLKNLVSSSTAKSLVCLMKLRIDGCKLM-TEIISSEGDVEEDEIVFSRLKWLSLECLDSLTSFCSGNCTFKFPSLE 224 (296)
Q Consensus 146 ~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~~-~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~L~ 224 (296)
++|.. ....+ ..+..+++|++|++++|... ..++.. +..+++|++|+++++. ++.+.+.. +..+++|+
T Consensus 429 ~~n~l-~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~p~~-------~~~l~~L~~L~l~~n~-l~~~~~~~-~~~l~~L~ 497 (570)
T 2z63_A 429 SHTHT-RVAFN-GIFNGLSSLEVLKMAGNSFQENFLPDI-------FTELRNLTFLDLSQCQ-LEQLSPTA-FNSLSSLQ 497 (570)
T ss_dssp TTSCC-EECCT-TTTTTCTTCCEEECTTCEEGGGEECSC-------CTTCTTCCEEECTTSC-CCEECTTT-TTTCTTCC
T ss_pred cCCcc-cccch-hhhhcCCcCcEEECcCCcCccccchhh-------hhcccCCCEEECCCCc-cccCChhh-hhcccCCC
Confidence 77643 22222 23566778888888877643 233332 3348888889888874 56664433 46788899
Q ss_pred EEeeccCCccccccC-CcccCCCcceEEcccCC
Q 022501 225 DLFVIDCPKMMIFSF-GVLSTPRLREVRKNWGL 256 (296)
Q Consensus 225 ~L~l~~c~~l~~~~~-~~~~~~~L~~l~l~~~~ 256 (296)
+|++++|. ++.++. .+..+++|+.++++.+.
T Consensus 498 ~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~N~ 529 (570)
T 2z63_A 498 VLNMASNQ-LKSVPDGIFDRLTSLQKIWLHTNP 529 (570)
T ss_dssp EEECCSSC-CSCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEeCCCCc-CCCCCHHHhhcccCCcEEEecCCc
Confidence 99998874 555544 45678889999987544
No 43
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.70 E-value=5.6e-16 Score=142.08 Aligned_cols=221 Identities=14% Similarity=0.138 Sum_probs=162.4
Q ss_pred ccceEEEeeccCccccccCCC-----CCCcCCCccEEEeccCCCCccChHHHhcC---CcccEEEEeccccceEeecCcc
Q 022501 7 ANLEELKLSGKDITMICHDHL-----PKHLFQNLKSLEIVSDKSDNFSIGFLQRF---HNVERLKLRNSSYKEIFSNGEV 78 (296)
Q Consensus 7 ~~L~~L~L~~~~~~~~~~~~~-----~~~~l~~L~~L~l~~~~~~~~~~~~~~~l---~~L~~L~l~~~~~~~~~~~~~~ 78 (296)
++|++|+++++++.+..+..+ . .+++|+.+++.++.. .+|...+..+ ++|++|++++|.+.....
T Consensus 247 ~~L~~L~l~~n~l~~~~p~~~~~~~~~--~l~~L~~l~l~~n~~-~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~---- 319 (520)
T 2z7x_B 247 TTVWYFSISNVKLQGQLDFRDFDYSGT--SLKALSIHQVVSDVF-GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLC---- 319 (520)
T ss_dssp SSCSEEEEEEEEEESCCCCCCCCCCSC--CCCEEEEEEEEECCC-CSCTHHHHHHHHTCCCSEEEEESSCCCCCCC----
T ss_pred CcccEEEeecccccCccccchhhcccc--cCceeEeccccccce-ecchhhhhcccccCceeEEEcCCCccccccc----
Confidence 478888888887774334444 4 789999999988888 7775455444 679999999996644321
Q ss_pred ccccCCccccceeEecccccccccccccCcccccCCCccEEEeccCcccc--ccccCccccCCccEEEeccCcCccc-cC
Q 022501 79 EKQAGMLTQIKSLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCNNLI--NLVPSSASFENLTTLEVSYCQRLKN-LV 155 (296)
Q Consensus 79 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~--~~~~~~~~l~~L~~L~l~~c~~l~~-~~ 155 (296)
...+++|++|.++++.....++.. +..+++|+.|+++++.... .++..+..+++|++|+++++. +.. ++
T Consensus 320 ---~~~l~~L~~L~Ls~n~l~~~~~~~----~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~-l~~~l~ 391 (520)
T 2z7x_B 320 ---PSKISPFLHLDFSNNLLTDTVFEN----CGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNS-VSYDEK 391 (520)
T ss_dssp ---CSSCCCCCEEECCSSCCCTTTTTT----CCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSC-CBCCGG
T ss_pred ---hhhCCcccEEEeECCccChhhhhh----hccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCc-CCcccc
Confidence 145899999999987654434433 6788999999999875433 444556778999999999865 444 43
Q ss_pred CcccccCCCCccEEEEeCccccceecccccccccccccCCccceeeccCCcCcceecCCCccccCCCccEEeeccCCccc
Q 022501 156 SSSTAKSLVCLMKLRIDGCKLMTEIISSEGDVEEDEIVFSRLKWLSLECLDSLTSFCSGNCTFKFPSLEDLFVIDCPKMM 235 (296)
Q Consensus 156 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~L~~L~l~~c~~l~ 235 (296)
. ..+..+++|++|++++|.....++... .++|+.|+++++ +++.++... ..+++|++|++++| .++
T Consensus 392 ~-~~~~~l~~L~~L~Ls~N~l~~~~~~~l---------~~~L~~L~Ls~N-~l~~ip~~~--~~l~~L~~L~L~~N-~l~ 457 (520)
T 2z7x_B 392 K-GDCSWTKSLLSLNMSSNILTDTIFRCL---------PPRIKVLDLHSN-KIKSIPKQV--VKLEALQELNVASN-QLK 457 (520)
T ss_dssp G-CSCCCCTTCCEEECCSSCCCGGGGGSC---------CTTCCEEECCSS-CCCCCCGGG--GGCTTCCEEECCSS-CCC
T ss_pred c-chhccCccCCEEECcCCCCCcchhhhh---------cccCCEEECCCC-cccccchhh--hcCCCCCEEECCCC-cCC
Confidence 2 235678999999999987543333210 269999999997 477776533 58999999999997 577
Q ss_pred cccCC-cccCCCcceEEcccCC
Q 022501 236 IFSFG-VLSTPRLREVRKNWGL 256 (296)
Q Consensus 236 ~~~~~-~~~~~~L~~l~l~~~~ 256 (296)
.+|.. +..+++|++++++.+.
T Consensus 458 ~l~~~~~~~l~~L~~L~l~~N~ 479 (520)
T 2z7x_B 458 SVPDGIFDRLTSLQKIWLHTNP 479 (520)
T ss_dssp CCCTTTTTTCTTCCEEECCSSC
T ss_pred ccCHHHhccCCcccEEECcCCC
Confidence 88886 6678999999998544
No 44
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.69 E-value=1e-15 Score=128.92 Aligned_cols=203 Identities=16% Similarity=0.093 Sum_probs=121.2
Q ss_pred CCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCccccccCCccccceeEecccccccccccccCccccc
Q 022501 33 QNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGMLTQIKSLKLWELSNLLHIWEQCYKLDSV 112 (296)
Q Consensus 33 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~ 112 (296)
++|++|++++|.+..++...+.++++|++|++++|.+..+.+ .....+++|++|.++++.. ..++... +..
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-----~~~~~l~~L~~L~L~~n~l-~~~~~~~---~~~ 98 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIED-----GAYQSLSHLSTLILTGNPI-QSLALGA---FSG 98 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECT-----TTTTTCTTCCEEECTTCCC-CEECTTT---TTT
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCH-----HHccCCcCCCEEECCCCcc-CccChhh---hcC
Confidence 457777777777666665556667777777777776655432 1123466777777766532 2222111 455
Q ss_pred CCCccEEEeccCccccccccCccccCCccEEEeccCcCccccCCcccccCCCCccEEEEeCccccceecccccccccccc
Q 022501 113 FQNLETLEIWWCNNLINLVPSSASFENLTTLEVSYCQRLKNLVSSSTAKSLVCLMKLRIDGCKLMTEIISSEGDVEEDEI 192 (296)
Q Consensus 113 ~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 192 (296)
+++|++|++.++......+..+..+++|++|+++++. +........+..+++|++|++++|.. +.+... .+.
T Consensus 99 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~l~~~~~~l~~L~~L~Ls~N~l-~~~~~~------~~~ 170 (276)
T 2z62_A 99 LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSNKI-QSIYCT------DLR 170 (276)
T ss_dssp CTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSC-CCCCCCCGGGGGCTTCCEEECCSSCC-CEECGG------GGH
T ss_pred CccccEEECCCCCccccCchhcccCCCCCEEECcCCc-cceecCchhhccCCCCCEEECCCCCC-CcCCHH------Hhh
Confidence 6777777777754332222245667788888887653 43322113456778888888887653 333211 122
Q ss_pred cCCccc----eeeccCCcCcceecCCCccccCCCccEEeeccCCccccccCCc-ccCCCcceEEcccCC
Q 022501 193 VFSRLK----WLSLECLDSLTSFCSGNCTFKFPSLEDLFVIDCPKMMIFSFGV-LSTPRLREVRKNWGL 256 (296)
Q Consensus 193 ~~~~L~----~L~l~~~~~L~~l~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~-~~~~~L~~l~l~~~~ 256 (296)
.+++|+ .|++++.. ++.++... ....+|+.|+++++. ++.+|... ..+++|+.++++.+.
T Consensus 171 ~l~~L~~l~l~L~ls~n~-l~~~~~~~--~~~~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~N~ 235 (276)
T 2z62_A 171 VLHQMPLLNLSLDLSLNP-MNFIQPGA--FKEIRLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTNP 235 (276)
T ss_dssp HHHTCTTCCEEEECCSSC-CCEECTTS--SCSCCEEEEECCSSC-CSCCCTTTTTTCCSCCEEECCSSC
T ss_pred hhhhccccceeeecCCCc-ccccCccc--cCCCcccEEECCCCc-eeecCHhHhcccccccEEEccCCc
Confidence 244555 67777754 66665543 334578899998874 66776653 567888988887443
No 45
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.69 E-value=1e-15 Score=138.25 Aligned_cols=140 Identities=18% Similarity=0.141 Sum_probs=88.9
Q ss_pred cccceEEEeeccCccccccCCCCCCcCCCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCccccccCCc
Q 022501 6 IANLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGML 85 (296)
Q Consensus 6 l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 85 (296)
+++|++|+++++.+++++ .+. .+++|++|++++|.+..++ +..+++|++|++++|.+.++ + .+.+
T Consensus 41 l~~L~~L~Ls~n~l~~~~--~l~--~l~~L~~L~Ls~n~l~~~~---~~~l~~L~~L~Ls~N~l~~~-~-------~~~l 105 (457)
T 3bz5_A 41 LATLTSLDCHNSSITDMT--GIE--KLTGLTKLICTSNNITTLD---LSQNTNLTYLACDSNKLTNL-D-------VTPL 105 (457)
T ss_dssp HTTCCEEECCSSCCCCCT--TGG--GCTTCSEEECCSSCCSCCC---CTTCTTCSEEECCSSCCSCC-C-------CTTC
T ss_pred cCCCCEEEccCCCcccCh--hhc--ccCCCCEEEccCCcCCeEc---cccCCCCCEEECcCCCCcee-e-------cCCC
Confidence 678888888888887762 345 7888888888888777765 56788888888888876654 1 2447
Q ss_pred cccceeEecccccccccccccCcccccCCCccEEEeccCccccccccCccccCCccEEEeccCcCccccCCcccccCCCC
Q 022501 86 TQIKSLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCNNLINLVPSSASFENLTTLEVSYCQRLKNLVSSSTAKSLVC 165 (296)
Q Consensus 86 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~ 165 (296)
++|++|.++++. +..++ +..+++|+.|+++++. +..++ +..+++|++|++++|..+... .+..+++
T Consensus 106 ~~L~~L~L~~N~-l~~l~------~~~l~~L~~L~l~~N~-l~~l~--l~~l~~L~~L~l~~n~~~~~~----~~~~l~~ 171 (457)
T 3bz5_A 106 TKLTYLNCDTNK-LTKLD------VSQNPLLTYLNCARNT-LTEID--VSHNTQLTELDCHLNKKITKL----DVTPQTQ 171 (457)
T ss_dssp TTCCEEECCSSC-CSCCC------CTTCTTCCEEECTTSC-CSCCC--CTTCTTCCEEECTTCSCCCCC----CCTTCTT
T ss_pred CcCCEEECCCCc-CCeec------CCCCCcCCEEECCCCc-cceec--cccCCcCCEEECCCCCccccc----ccccCCc
Confidence 777777777653 33331 4456666666666643 33332 344566666666665444433 1344555
Q ss_pred ccEEEEeCc
Q 022501 166 LMKLRIDGC 174 (296)
Q Consensus 166 L~~L~l~~~ 174 (296)
|++|++++|
T Consensus 172 L~~L~ls~n 180 (457)
T 3bz5_A 172 LTTLDCSFN 180 (457)
T ss_dssp CCEEECCSS
T ss_pred CCEEECCCC
Confidence 666665554
No 46
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.69 E-value=1.5e-16 Score=143.61 Aligned_cols=75 Identities=17% Similarity=0.192 Sum_probs=50.8
Q ss_pred cccceEEEeeccCccccccCCCCCCcCCCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCccccccCCc
Q 022501 6 IANLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGML 85 (296)
Q Consensus 6 l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 85 (296)
+++|++|+++++++++++ +. .+++|++|++++|.+..++ ++++++|++|++++|.+.++ + ...+
T Consensus 63 l~~L~~L~Ls~n~l~~~~---~~--~l~~L~~L~Ls~N~l~~~~---~~~l~~L~~L~L~~N~l~~l-~-------~~~l 126 (457)
T 3bz5_A 63 LTGLTKLICTSNNITTLD---LS--QNTNLTYLACDSNKLTNLD---VTPLTKLTYLNCDTNKLTKL-D-------VSQN 126 (457)
T ss_dssp CTTCSEEECCSSCCSCCC---CT--TCTTCSEEECCSSCCSCCC---CTTCTTCCEEECCSSCCSCC-C-------CTTC
T ss_pred cCCCCEEEccCCcCCeEc---cc--cCCCCCEEECcCCCCceee---cCCCCcCCEEECCCCcCCee-c-------CCCC
Confidence 678888888888777763 44 6788888888777777665 56777888888887766553 1 1335
Q ss_pred cccceeEeccc
Q 022501 86 TQIKSLKLWEL 96 (296)
Q Consensus 86 ~~L~~L~l~~~ 96 (296)
++|++|.++++
T Consensus 127 ~~L~~L~l~~N 137 (457)
T 3bz5_A 127 PLLTYLNCARN 137 (457)
T ss_dssp TTCCEEECTTS
T ss_pred CcCCEEECCCC
Confidence 55555555543
No 47
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.69 E-value=2.3e-16 Score=135.72 Aligned_cols=215 Identities=14% Similarity=0.066 Sum_probs=158.8
Q ss_pred ceEEEeeccCccccccCCCCCCcCCCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCccccccCCcccc
Q 022501 9 LEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGMLTQI 88 (296)
Q Consensus 9 L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L 88 (296)
++..+++.+++.......+. .+++|+.|++++|.+..+++..+..+++|++|++++|.+.+..++ ..+++|
T Consensus 12 l~i~~ls~~~l~~~~~~~~~--~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-------~~l~~L 82 (317)
T 3o53_A 12 YKIEKVTDSSLKQALASLRQ--SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDL-------ESLSTL 82 (317)
T ss_dssp EEEESCCTTTHHHHHHHHHT--TGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEEE-------TTCTTC
T ss_pred eeEeeccccchhhhHHHHhc--cCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchhh-------hhcCCC
Confidence 33444444445444333334 678999999999999999888899999999999999988877653 449999
Q ss_pred ceeEecccccccccccccCcccccCCCccEEEeccCccccccccCccccCCccEEEeccCcCccccCCcccccCCCCccE
Q 022501 89 KSLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCNNLINLVPSSASFENLTTLEVSYCQRLKNLVSSSTAKSLVCLMK 168 (296)
Q Consensus 89 ~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~ 168 (296)
++|+++++. +..+ ...++|+.|+++++. +..++... +++|+.|+++++. +....+. .+..+++|++
T Consensus 83 ~~L~Ls~n~-l~~l--------~~~~~L~~L~l~~n~-l~~~~~~~--~~~L~~L~l~~N~-l~~~~~~-~~~~l~~L~~ 148 (317)
T 3o53_A 83 RTLDLNNNY-VQEL--------LVGPSIETLHAANNN-ISRVSCSR--GQGKKNIYLANNK-ITMLRDL-DEGCRSRVQY 148 (317)
T ss_dssp CEEECCSSE-EEEE--------EECTTCCEEECCSSC-CSEEEECC--CSSCEEEECCSSC-CCSGGGB-CTGGGSSEEE
T ss_pred CEEECcCCc-cccc--------cCCCCcCEEECCCCc-cCCcCccc--cCCCCEEECCCCC-CCCccch-hhhccCCCCE
Confidence 999999864 3332 335789999999864 55554433 7899999999864 5554332 4567899999
Q ss_pred EEEeCccccceecccccccccccccCCccceeeccCCcCcceecCCCccccCCCccEEeeccCCccccccCCcccCCCcc
Q 022501 169 LRIDGCKLMTEIISSEGDVEEDEIVFSRLKWLSLECLDSLTSFCSGNCTFKFPSLEDLFVIDCPKMMIFSFGVLSTPRLR 248 (296)
Q Consensus 169 L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~ 248 (296)
|++++|......+... ...+++|++|+++++. ++.++... .+++|++|++++| .++.+|..+..+++|+
T Consensus 149 L~Ls~N~l~~~~~~~~------~~~l~~L~~L~L~~N~-l~~~~~~~---~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~ 217 (317)
T 3o53_A 149 LDLKLNEIDTVNFAEL------AASSDTLEHLNLQYNF-IYDVKGQV---VFAKLKTLDLSSN-KLAFMGPEFQSAAGVT 217 (317)
T ss_dssp EECTTSCCCEEEGGGG------GGGTTTCCEEECTTSC-CCEEECCC---CCTTCCEEECCSS-CCCEECGGGGGGTTCS
T ss_pred EECCCCCCCcccHHHH------hhccCcCCEEECCCCc-Cccccccc---ccccCCEEECCCC-cCCcchhhhcccCccc
Confidence 9999986433222221 1237999999999975 77775433 5899999999997 5778887788899999
Q ss_pred eEEcccCCc
Q 022501 249 EVRKNWGLD 257 (296)
Q Consensus 249 ~l~l~~~~~ 257 (296)
.++++.+..
T Consensus 218 ~L~L~~N~l 226 (317)
T 3o53_A 218 WISLRNNKL 226 (317)
T ss_dssp EEECTTSCC
T ss_pred EEECcCCcc
Confidence 999986553
No 48
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.68 E-value=1.5e-16 Score=138.95 Aligned_cols=227 Identities=19% Similarity=0.079 Sum_probs=164.9
Q ss_pred cccceEEEeeccCccccccCCCCCCcCCCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCccccccCCc
Q 022501 6 IANLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGML 85 (296)
Q Consensus 6 l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 85 (296)
++.....+.++++++.++ .. ..++|++|++++|.+..++...+.++++|++|++++|.+.++.+ .....+
T Consensus 30 C~~~~~c~~~~~~l~~iP-~~----~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-----~~~~~l 99 (353)
T 2z80_A 30 CDRNGICKGSSGSLNSIP-SG----LTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEE-----DSFSSL 99 (353)
T ss_dssp ECTTSEEECCSTTCSSCC-TT----CCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECT-----TTTTTC
T ss_pred CCCCeEeeCCCCCccccc-cc----ccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCH-----hhcCCC
Confidence 566666777778888774 22 45799999999999998888788999999999999998877643 123458
Q ss_pred cccceeEecccccccccccccCcccccCCCccEEEeccCcccccccc--CccccCCccEEEeccCcCccccCCcccccCC
Q 022501 86 TQIKSLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCNNLINLVP--SSASFENLTTLEVSYCQRLKNLVSSSTAKSL 163 (296)
Q Consensus 86 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~--~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l 163 (296)
++|++|+++++. +..++... +..+++|++|+++++ .+..++. .+..+++|++|+++++..+...... .+..+
T Consensus 100 ~~L~~L~Ls~n~-l~~~~~~~---~~~l~~L~~L~L~~n-~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~-~~~~l 173 (353)
T 2z80_A 100 GSLEHLDLSYNY-LSNLSSSW---FKPLSSLTFLNLLGN-PYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRK-DFAGL 173 (353)
T ss_dssp TTCCEEECCSSC-CSSCCHHH---HTTCTTCSEEECTTC-CCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTT-TTTTC
T ss_pred CCCCEEECCCCc-CCcCCHhH---hCCCccCCEEECCCC-CCcccCchhhhccCCCCcEEECCCCccccccCHH-HccCC
Confidence 999999999864 34443321 456889999999986 5556665 5677999999999998767666443 46788
Q ss_pred CCccEEEEeCccccceecccccccccccccCCccceeeccCCcCcceecCCCccccCCCccEEeeccCCccccc------
Q 022501 164 VCLMKLRIDGCKLMTEIISSEGDVEEDEIVFSRLKWLSLECLDSLTSFCSGNCTFKFPSLEDLFVIDCPKMMIF------ 237 (296)
Q Consensus 164 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~L~~L~l~~c~~l~~~------ 237 (296)
++|++|++++|......+.. +..+++|++|+++++. ++.++... ...+++|+.|+++++. ++.+
T Consensus 174 ~~L~~L~l~~n~l~~~~~~~-------l~~l~~L~~L~l~~n~-l~~~~~~~-~~~~~~L~~L~L~~n~-l~~~~~~~l~ 243 (353)
T 2z80_A 174 TFLEELEIDASDLQSYEPKS-------LKSIQNVSHLILHMKQ-HILLLEIF-VDVTSSVECLELRDTD-LDTFHFSELS 243 (353)
T ss_dssp CEEEEEEEEETTCCEECTTT-------TTTCSEEEEEEEECSC-STTHHHHH-HHHTTTEEEEEEESCB-CTTCCCC---
T ss_pred CCCCEEECCCCCcCccCHHH-------HhccccCCeecCCCCc-cccchhhh-hhhcccccEEECCCCc-cccccccccc
Confidence 99999999998643332332 3348999999999865 45444321 2357889999998874 4332
Q ss_pred --------------------------cCCcccCCCcceEEcccCCcc
Q 022501 238 --------------------------SFGVLSTPRLREVRKNWGLDK 258 (296)
Q Consensus 238 --------------------------~~~~~~~~~L~~l~l~~~~~~ 258 (296)
|..+..+++|++|+++.+...
T Consensus 244 ~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~ 290 (353)
T 2z80_A 244 TGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK 290 (353)
T ss_dssp ---CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC
T ss_pred cccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC
Confidence 222346778999999765543
No 49
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.68 E-value=8.8e-18 Score=145.54 Aligned_cols=205 Identities=14% Similarity=0.146 Sum_probs=117.9
Q ss_pred ccceEEEeeccCccccccCCCCCCcCCCccEEEeccCCCCcc-ChHHHhcCCcccEEEEeccccceEeecCccccccCCc
Q 022501 7 ANLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSDNF-SIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGML 85 (296)
Q Consensus 7 ~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 85 (296)
++++.|+++++.+.+..+. .. .+++|++|++++|.+... .+..+..+++|++|++++|.+....+ .....+
T Consensus 70 ~~l~~L~l~~n~l~~~~~~-~~--~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~-----~~l~~~ 141 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAE-HF--SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIV-----NTLAKN 141 (336)
T ss_dssp TTCSEEECTTCEECSCCCS-CC--CCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHH-----HHHTTC
T ss_pred ccceEEEcCCccccccchh-hc--cCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHH-----HHHhcC
Confidence 5677777777766665432 23 567777777777765422 23456677777777777775432111 112347
Q ss_pred cccceeEecccccccc--cccccCcccccCCCccEEEeccCccccc--cccCccccC-CccEEEeccCc-CccccCCccc
Q 022501 86 TQIKSLKLWELSNLLH--IWEQCYKLDSVFQNLETLEIWWCNNLIN--LVPSSASFE-NLTTLEVSYCQ-RLKNLVSSST 159 (296)
Q Consensus 86 ~~L~~L~l~~~~~l~~--~~~~~~~~~~~~~~L~~L~l~~~~~l~~--~~~~~~~l~-~L~~L~l~~c~-~l~~~~~~~~ 159 (296)
++|++|++++|..+.. ++.. +..+++|++|++++|..+.+ ++..+..++ +|++|++++|. .+++......
T Consensus 142 ~~L~~L~L~~~~~l~~~~l~~~----~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~ 217 (336)
T 2ast_B 142 SNLVRLNLSGCSGFSEFALQTL----LSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTL 217 (336)
T ss_dssp TTCSEEECTTCBSCCHHHHHHH----HHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHH
T ss_pred CCCCEEECCCCCCCCHHHHHHH----HhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHH
Confidence 7777777777755442 2222 44567777777777744443 344455566 77777777764 3432111123
Q ss_pred ccCCCCccEEEEeCccccc-eecccccccccccccCCccceeeccCCcCcceecCCCccccCCCccEEeeccC
Q 022501 160 AKSLVCLMKLRIDGCKLMT-EIISSEGDVEEDEIVFSRLKWLSLECLDSLTSFCSGNCTFKFPSLEDLFVIDC 231 (296)
Q Consensus 160 ~~~l~~L~~L~l~~~~~~~-~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~L~~L~l~~c 231 (296)
+..+++|++|++++|..++ ..+.. +..+++|++|++++|..+...... .+..+++|+.|++++|
T Consensus 218 ~~~~~~L~~L~l~~~~~l~~~~~~~-------l~~l~~L~~L~l~~~~~~~~~~~~-~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 218 VRRCPNLVHLDLSDSVMLKNDCFQE-------FFQLNYLQHLSLSRCYDIIPETLL-ELGEIPTLKTLQVFGI 282 (336)
T ss_dssp HHHCTTCSEEECTTCTTCCGGGGGG-------GGGCTTCCEEECTTCTTCCGGGGG-GGGGCTTCCEEECTTS
T ss_pred HhhCCCCCEEeCCCCCcCCHHHHHH-------HhCCCCCCEeeCCCCCCCCHHHHH-HHhcCCCCCEEeccCc
Confidence 4566777777777776433 22221 223677777777777643332211 1345777777777776
No 50
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.68 E-value=1.6e-16 Score=149.25 Aligned_cols=136 Identities=14% Similarity=0.069 Sum_probs=68.6
Q ss_pred cccCCCccEEEeccCccccccccCccccCCccEEEeccCcCccccCCcccccCCCC-ccEEEEeCccccceecccccccc
Q 022501 110 DSVFQNLETLEIWWCNNLINLVPSSASFENLTTLEVSYCQRLKNLVSSSTAKSLVC-LMKLRIDGCKLMTEIISSEGDVE 188 (296)
Q Consensus 110 ~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~-L~~L~l~~~~~~~~~~~~~~~~~ 188 (296)
+..+++|+.|+++++...+.+| .+..+++|+.|+++++. +..++. .+..+++ |++|++++|.. ..++....
T Consensus 326 l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~-l~~lp~--~l~~l~~~L~~L~Ls~N~l-~~lp~~~~--- 397 (636)
T 4eco_A 326 LQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQ-ITEIPA--NFCGFTEQVENLSFAHNKL-KYIPNIFD--- 397 (636)
T ss_dssp HTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSE-EEECCT--TSEEECTTCCEEECCSSCC-SSCCSCCC---
T ss_pred hccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCc-cccccH--hhhhhcccCcEEEccCCcC-cccchhhh---
Confidence 3445555555555543333444 44445555555555442 333221 2344555 66666665542 23332111
Q ss_pred cccccCCccceeeccCCcCcceecCCCccc-------cCCCccEEeeccCCccccccCCcc-cCCCcceEEcccCCcc
Q 022501 189 EDEIVFSRLKWLSLECLDSLTSFCSGNCTF-------KFPSLEDLFVIDCPKMMIFSFGVL-STPRLREVRKNWGLDK 258 (296)
Q Consensus 189 ~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~-------~~~~L~~L~l~~c~~l~~~~~~~~-~~~~L~~l~l~~~~~~ 258 (296)
...+++|++|+++++. +....+.. +. .+++|++|++++| .++.+|.... .+++|++|+++.+...
T Consensus 398 --~~~l~~L~~L~Ls~N~-l~~~~p~~-l~~~~~~~~~~~~L~~L~Ls~N-~l~~lp~~~~~~l~~L~~L~Ls~N~l~ 470 (636)
T 4eco_A 398 --AKSVSVMSAIDFSYNE-IGSVDGKN-FDPLDPTPFKGINVSSINLSNN-QISKFPKELFSTGSPLSSINLMGNMLT 470 (636)
T ss_dssp --TTCSSCEEEEECCSSC-TTTTTTCS-SCTTCSSCCCCCCEEEEECCSS-CCCSCCTHHHHTTCCCSEEECCSSCCS
T ss_pred --hcccCccCEEECcCCc-CCCcchhh-hcccccccccCCCCCEEECcCC-ccCcCCHHHHccCCCCCEEECCCCCCC
Confidence 1113366666666653 22211111 11 4557888888776 4556666543 3678888888765544
No 51
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.68 E-value=2.6e-16 Score=147.85 Aligned_cols=238 Identities=11% Similarity=0.020 Sum_probs=143.4
Q ss_pred ccccceEEEeeccCccccccCCCCCCcCCCccEEEeccCC-CC--ccChHHHhcC------CcccEEEEeccccceEeec
Q 022501 5 VIANLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDK-SD--NFSIGFLQRF------HNVERLKLRNSSYKEIFSN 75 (296)
Q Consensus 5 ~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~--~~~~~~~~~l------~~L~~L~l~~~~~~~~~~~ 75 (296)
.+++|++|++++|.+.+..|..+. .+++|+.|++++|. .. .+|. .+..+ ++|++|++.+|.+..+...
T Consensus 247 ~l~~L~~L~L~~n~l~~~~p~~l~--~l~~L~~L~Ls~n~~l~~~~lp~-~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~ 323 (636)
T 4eco_A 247 NLKDLTDVEVYNCPNLTKLPTFLK--ALPEMQLINVACNRGISGEQLKD-DWQALADAPVGEKIQIIYIGYNNLKTFPVE 323 (636)
T ss_dssp GCTTCCEEEEECCTTCSSCCTTTT--TCSSCCEEECTTCTTSCHHHHHH-HHHHHHHSGGGGTCCEEECCSSCCSSCCCH
T ss_pred ccCCCCEEEecCCcCCccChHHHh--cCCCCCEEECcCCCCCccccchH-HHHhhhccccCCCCCEEECCCCcCCccCch
Confidence 578999999999887766667777 89999999999887 55 3554 34444 8999999998877643220
Q ss_pred CccccccCCccccceeEecccccccccccccCcccccCCCccEEEeccCccccccccCccccCC-ccEEEeccCcCcccc
Q 022501 76 GEVEKQAGMLTQIKSLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCNNLINLVPSSASFEN-LTTLEVSYCQRLKNL 154 (296)
Q Consensus 76 ~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~-L~~L~l~~c~~l~~~ 154 (296)
. ....+++|+.|.++++.....++ . +..+++|+.|+++++ .+..+|..+..+++ |++|+++++. ++.+
T Consensus 324 ~----~l~~l~~L~~L~L~~N~l~g~ip-~----~~~l~~L~~L~L~~N-~l~~lp~~l~~l~~~L~~L~Ls~N~-l~~l 392 (636)
T 4eco_A 324 T----SLQKMKKLGMLECLYNQLEGKLP-A----FGSEIKLASLNLAYN-QITEIPANFCGFTEQVENLSFAHNK-LKYI 392 (636)
T ss_dssp H----HHTTCTTCCEEECCSCCCEEECC-C----CEEEEEESEEECCSS-EEEECCTTSEEECTTCCEEECCSSC-CSSC
T ss_pred h----hhccCCCCCEEeCcCCcCccchh-h----hCCCCCCCEEECCCC-ccccccHhhhhhcccCcEEEccCCc-Cccc
Confidence 0 23457788888887664332444 2 555666777777665 34456655666666 7777666543 3333
Q ss_pred CCcccccCCCCccEEEEeCccccceeccccc-------c-----------------cccccccCCccceeeccCCcCcce
Q 022501 155 VSSSTAKSLVCLMKLRIDGCKLMTEIISSEG-------D-----------------VEEDEIVFSRLKWLSLECLDSLTS 210 (296)
Q Consensus 155 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-------~-----------------~~~~~~~~~~L~~L~l~~~~~L~~ 210 (296)
+.......+++|++|++++|.....++.... . ....+..+++|++|+++++. ++.
T Consensus 393 p~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~-l~~ 471 (636)
T 4eco_A 393 PNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNM-LTE 471 (636)
T ss_dssp CSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSC-CSB
T ss_pred chhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCC-CCC
Confidence 3211111223566666655543221111000 0 00012236777777777754 455
Q ss_pred ecCCCcc------ccCCCccEEeeccCCccccccCCcc--cCCCcceEEcccCCcc
Q 022501 211 FCSGNCT------FKFPSLEDLFVIDCPKMMIFSFGVL--STPRLREVRKNWGLDK 258 (296)
Q Consensus 211 l~~~~~~------~~~~~L~~L~l~~c~~l~~~~~~~~--~~~~L~~l~l~~~~~~ 258 (296)
++..... ..+++|+.|++++| .++.+|..+. .+++|+.|+++.+...
T Consensus 472 i~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~~~l~~L~~L~Ls~N~l~ 526 (636)
T 4eco_A 472 IPKNSLKDENENFKNTYLLTSIDLRFN-KLTKLSDDFRATTLPYLVGIDLSYNSFS 526 (636)
T ss_dssp CCSSSSEETTEECTTGGGCCEEECCSS-CCCBCCGGGSTTTCTTCCEEECCSSCCS
T ss_pred cCHHHhccccccccccCCccEEECcCC-cCCccChhhhhccCCCcCEEECCCCCCC
Confidence 5543311 11228888999887 4667887775 7888999998765543
No 52
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.67 E-value=6.3e-16 Score=141.75 Aligned_cols=105 Identities=16% Similarity=0.127 Sum_probs=70.1
Q ss_pred cccceEEEeeccCccccccCCCCCCcCCCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCccccccCCc
Q 022501 6 IANLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGML 85 (296)
Q Consensus 6 l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 85 (296)
.++|++|+++++.++++.+..+. .+++|++|++++|.+..+++..++++++|++|++++|.+..+... .+
T Consensus 20 ~~~L~~L~Ls~n~i~~~~~~~~~--~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--------~l 89 (520)
T 2z7x_B 20 SQKTTILNISQNYISELWTSDIL--SLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCH--------PT 89 (520)
T ss_dssp CTTCSEEECCSSCCCCCCHHHHT--TCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEECC--------CC
T ss_pred cccccEEECCCCcccccChhhcc--ccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeecCcc--------cc
Confidence 36788888888888777555566 788888888888888777666778888888888888877765432 36
Q ss_pred cccceeEeccccccc-ccccccCcccccCCCccEEEeccC
Q 022501 86 TQIKSLKLWELSNLL-HIWEQCYKLDSVFQNLETLEIWWC 124 (296)
Q Consensus 86 ~~L~~L~l~~~~~l~-~~~~~~~~~~~~~~~L~~L~l~~~ 124 (296)
++|++|.++++.... .++.. +..+++|++|+++++
T Consensus 90 ~~L~~L~L~~N~l~~~~~p~~----~~~l~~L~~L~L~~n 125 (520)
T 2z7x_B 90 VNLKHLDLSFNAFDALPICKE----FGNMSQLKFLGLSTT 125 (520)
T ss_dssp CCCSEEECCSSCCSSCCCCGG----GGGCTTCCEEEEEES
T ss_pred CCccEEeccCCccccccchhh----hccCCcceEEEecCc
Confidence 667777776654221 11222 444555555555554
No 53
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.67 E-value=2e-15 Score=139.78 Aligned_cols=209 Identities=15% Similarity=0.059 Sum_probs=149.4
Q ss_pred cccceEEEeeccCccccccCCCCCCcCCCccEEEeccCCCCccC--hHHHhcCCcccEEEEeccccceEeecCccccccC
Q 022501 6 IANLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSDNFS--IGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAG 83 (296)
Q Consensus 6 l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~--~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 83 (296)
+++|++|+++++.+....+. ..+++|+.|++++|.+.... +..+..+++|++|++++|.+..+.+. ..
T Consensus 324 l~~L~~L~l~~n~~~~~~~~----~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~------~~ 393 (570)
T 2z63_A 324 LKSLKRLTFTSNKGGNAFSE----VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN------FL 393 (570)
T ss_dssp CSSCCEEEEESCBSCCBCCC----CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE------EE
T ss_pred ccccCEEeCcCCcccccccc----ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc------cc
Confidence 56666666666554443211 27888999999888777553 34677889999999999877766441 34
Q ss_pred CccccceeEecccccccccccccCcccccCCCccEEEeccCccccccccCccccCCccEEEeccCcCcc-ccCCcccccC
Q 022501 84 MLTQIKSLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCNNLINLVPSSASFENLTTLEVSYCQRLK-NLVSSSTAKS 162 (296)
Q Consensus 84 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~-~~~~~~~~~~ 162 (296)
.+++|+.|.++++......+.. .+..+++|+.|++++|......+..+..+++|+.|++++|.... ..+ ..+..
T Consensus 394 ~l~~L~~L~l~~n~l~~~~~~~---~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p--~~~~~ 468 (570)
T 2z63_A 394 GLEQLEHLDFQHSNLKQMSEFS---VFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP--DIFTE 468 (570)
T ss_dssp TCTTCCEEECTTSEEESCTTSC---TTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEEC--SCCTT
T ss_pred ccCCCCEEEccCCccccccchh---hhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccch--hhhhc
Confidence 5999999999987543322211 15678999999999986666666677889999999999886332 233 34688
Q ss_pred CCCccEEEEeCccccceecccccccccccccCCccceeeccCCcCcceecCCCccccCCCccEEeeccCCcccccc
Q 022501 163 LVCLMKLRIDGCKLMTEIISSEGDVEEDEIVFSRLKWLSLECLDSLTSFCSGNCTFKFPSLEDLFVIDCPKMMIFS 238 (296)
Q Consensus 163 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~L~~L~l~~c~~l~~~~ 238 (296)
+++|++|++++|......+.. +..+++|++|+++++ +++.++... +..+++|+.|++++++.....|
T Consensus 469 l~~L~~L~l~~n~l~~~~~~~-------~~~l~~L~~L~l~~n-~l~~~~~~~-~~~l~~L~~L~l~~N~~~~~~~ 535 (570)
T 2z63_A 469 LRNLTFLDLSQCQLEQLSPTA-------FNSLSSLQVLNMASN-QLKSVPDGI-FDRLTSLQKIWLHTNPWDCSCP 535 (570)
T ss_dssp CTTCCEEECTTSCCCEECTTT-------TTTCTTCCEEECCSS-CCSCCCTTT-TTTCTTCCEEECCSSCBCCCTT
T ss_pred ccCCCEEECCCCccccCChhh-------hhcccCCCEEeCCCC-cCCCCCHHH-hhcccCCcEEEecCCcccCCCc
Confidence 999999999998643332332 334899999999997 477776543 5688999999999987544433
No 54
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.67 E-value=1.7e-15 Score=137.22 Aligned_cols=210 Identities=20% Similarity=0.210 Sum_probs=115.6
Q ss_pred cccceEEEeeccCccccccCCCCCCcCCCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCccccccCCc
Q 022501 6 IANLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGML 85 (296)
Q Consensus 6 l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 85 (296)
+++|++|+++++.++.+. .+. .+++|++|++++|.+...++ ++.+++|++|++.+|.+..+. ....+
T Consensus 176 l~~L~~L~l~~n~l~~~~--~l~--~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~-------~l~~l 242 (466)
T 1o6v_A 176 LTTLERLDISSNKVSDIS--VLA--KLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIG-------TLASL 242 (466)
T ss_dssp CTTCCEEECCSSCCCCCG--GGG--GCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCG-------GGGGC
T ss_pred CCCCCEEECcCCcCCCCh--hhc--cCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccch-------hhhcC
Confidence 344555555554444432 122 45555555555554443332 344555555555555443321 12235
Q ss_pred cccceeEecccccccccccccCcccccCCCccEEEeccCccccccccCccccCCccEEEeccCcCccccCCcccccCCCC
Q 022501 86 TQIKSLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCNNLINLVPSSASFENLTTLEVSYCQRLKNLVSSSTAKSLVC 165 (296)
Q Consensus 86 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~ 165 (296)
++|+.|.++++.. ..++. +..+++|+.|+++++. +..++. +..+++|+.|++++|. +.+.. .+..+++
T Consensus 243 ~~L~~L~l~~n~l-~~~~~-----~~~l~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~L~~n~-l~~~~---~~~~l~~ 310 (466)
T 1o6v_A 243 TNLTDLDLANNQI-SNLAP-----LSGLTKLTELKLGANQ-ISNISP-LAGLTALTNLELNENQ-LEDIS---PISNLKN 310 (466)
T ss_dssp TTCSEEECCSSCC-CCCGG-----GTTCTTCSEEECCSSC-CCCCGG-GTTCTTCSEEECCSSC-CSCCG---GGGGCTT
T ss_pred CCCCEEECCCCcc-ccchh-----hhcCCCCCEEECCCCc-cCcccc-ccCCCccCeEEcCCCc-ccCch---hhcCCCC
Confidence 6666666665432 22111 4456667777776653 333333 4556777777777653 44432 2456777
Q ss_pred ccEEEEeCccccceecccccccccccccCCccceeeccCCcCcceecCCCccccCCCccEEeeccCCccccccCCcccCC
Q 022501 166 LMKLRIDGCKLMTEIISSEGDVEEDEIVFSRLKWLSLECLDSLTSFCSGNCTFKFPSLEDLFVIDCPKMMIFSFGVLSTP 245 (296)
Q Consensus 166 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~ 245 (296)
|++|++++|.. ..+.. ...+++|++|+++++. ++.++ .+..+++|+.|++++|......| ...++
T Consensus 311 L~~L~L~~n~l-~~~~~--------~~~l~~L~~L~l~~n~-l~~~~---~l~~l~~L~~L~l~~n~l~~~~~--~~~l~ 375 (466)
T 1o6v_A 311 LTYLTLYFNNI-SDISP--------VSSLTKLQRLFFYNNK-VSDVS---SLANLTNINWLSAGHNQISDLTP--LANLT 375 (466)
T ss_dssp CSEEECCSSCC-SCCGG--------GGGCTTCCEEECCSSC-CCCCG---GGTTCTTCCEEECCSSCCCBCGG--GTTCT
T ss_pred CCEEECcCCcC-CCchh--------hccCccCCEeECCCCc-cCCch---hhccCCCCCEEeCCCCccCccch--hhcCC
Confidence 77777777643 22221 2237788888888763 55552 24577888888888875433333 45778
Q ss_pred CcceEEcccC
Q 022501 246 RLREVRKNWG 255 (296)
Q Consensus 246 ~L~~l~l~~~ 255 (296)
+|+.++++.+
T Consensus 376 ~L~~L~l~~n 385 (466)
T 1o6v_A 376 RITQLGLNDQ 385 (466)
T ss_dssp TCCEEECCCE
T ss_pred CCCEEeccCC
Confidence 8888888643
No 55
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.67 E-value=3.5e-16 Score=150.66 Aligned_cols=80 Identities=15% Similarity=0.181 Sum_probs=37.9
Q ss_pred ccceEEEeeccCccccccC--CCCCCcCCCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCccccccCC
Q 022501 7 ANLEELKLSGKDITMICHD--HLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGM 84 (296)
Q Consensus 7 ~~L~~L~L~~~~~~~~~~~--~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 84 (296)
++|++|++++|.++.++ . .+. .+++|+.|++++|.+..+| .+..+++|++|++++|.+..+ +.....
T Consensus 548 ~~L~~L~Ls~N~L~~ip-~~~~l~--~L~~L~~L~Ls~N~l~~lp--~~~~L~~L~~L~Ls~N~l~~l------p~~l~~ 616 (876)
T 4ecn_A 548 PKIQIFYMGYNNLEEFP-ASASLQ--KMVKLGLLDCVHNKVRHLE--AFGTNVKLTDLKLDYNQIEEI------PEDFCA 616 (876)
T ss_dssp TTCCEEECCSSCCCBCC-CHHHHT--TCTTCCEEECTTSCCCBCC--CCCTTSEESEEECCSSCCSCC------CTTSCE
T ss_pred CCccEEEeeCCcCCccC-Chhhhh--cCCCCCEEECCCCCcccch--hhcCCCcceEEECcCCccccc------hHHHhh
Confidence 35555555555544332 2 233 4555555555555544444 344455555555555544321 112233
Q ss_pred ccc-cceeEecccc
Q 022501 85 LTQ-IKSLKLWELS 97 (296)
Q Consensus 85 ~~~-L~~L~l~~~~ 97 (296)
+++ |+.|.++++.
T Consensus 617 l~~~L~~L~Ls~N~ 630 (876)
T 4ecn_A 617 FTDQVEGLGFSHNK 630 (876)
T ss_dssp ECTTCCEEECCSSC
T ss_pred ccccCCEEECcCCC
Confidence 555 6666665543
No 56
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.67 E-value=4.2e-16 Score=131.21 Aligned_cols=152 Identities=23% Similarity=0.288 Sum_probs=68.9
Q ss_pred cccceEEEeeccCccccccCCCCCCcCCCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCccccccCCc
Q 022501 6 IANLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGML 85 (296)
Q Consensus 6 l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 85 (296)
+++|++|+++++.++.+. .+. .+++|+.|++++|.+..++ .+..+++|++|++++|.+.++.+ .....+
T Consensus 40 l~~L~~L~l~~~~i~~~~--~l~--~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~L~~n~l~~~~~-----~~~~~l 108 (272)
T 3rfs_A 40 LNSIDQIIANNSDIKSVQ--GIQ--YLPNVRYLALGGNKLHDIS--ALKELTNLTYLILTGNQLQSLPN-----GVFDKL 108 (272)
T ss_dssp HTTCCEEECTTSCCCCCT--TGG--GCTTCCEEECTTSCCCCCG--GGTTCTTCCEEECTTSCCCCCCT-----TTTTTC
T ss_pred ccceeeeeeCCCCccccc--ccc--cCCCCcEEECCCCCCCCch--hhcCCCCCCEEECCCCccCccCh-----hHhcCC
Confidence 455555555555554432 123 4555555555555544433 34455555555555554443321 011235
Q ss_pred cccceeEecccccccccccccCcccccCCCccEEEeccCccccccccC-ccccCCccEEEeccCcCccccCCcccccCCC
Q 022501 86 TQIKSLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCNNLINLVPS-SASFENLTTLEVSYCQRLKNLVSSSTAKSLV 164 (296)
Q Consensus 86 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~ 164 (296)
++|++|.++++. +..++... +..+++|+.|+++++ .+..++.. +..+++|+.|++++|. ++..+.. .+..++
T Consensus 109 ~~L~~L~L~~n~-l~~~~~~~---~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~-~~~~l~ 181 (272)
T 3rfs_A 109 TNLKELVLVENQ-LQSLPDGV---FDKLTNLTYLNLAHN-QLQSLPKGVFDKLTNLTELDLSYNQ-LQSLPEG-VFDKLT 181 (272)
T ss_dssp TTCCEEECTTSC-CCCCCTTT---TTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTT-TTTTCT
T ss_pred cCCCEEECCCCc-CCccCHHH---hccCCCCCEEECCCC-ccCccCHHHhccCccCCEEECCCCC-cCccCHH-HhcCCc
Confidence 555555555443 22221111 234455555555554 23333332 2345555555555442 3333221 234455
Q ss_pred CccEEEEeCcc
Q 022501 165 CLMKLRIDGCK 175 (296)
Q Consensus 165 ~L~~L~l~~~~ 175 (296)
+|++|++++|.
T Consensus 182 ~L~~L~L~~N~ 192 (272)
T 3rfs_A 182 QLKDLRLYQNQ 192 (272)
T ss_dssp TCCEEECCSSC
T ss_pred cCCEEECCCCc
Confidence 55555555543
No 57
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.67 E-value=2.9e-15 Score=130.65 Aligned_cols=222 Identities=13% Similarity=0.054 Sum_probs=160.0
Q ss_pred cccceEEEeeccCccccccCCCCCCcCCCccEEEeccCCCC-ccChHHHhcCCcccEEE-EeccccceEeecCccccccC
Q 022501 6 IANLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSD-NFSIGFLQRFHNVERLK-LRNSSYKEIFSNGEVEKQAG 83 (296)
Q Consensus 6 l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~-l~~~~~~~~~~~~~~~~~~~ 83 (296)
.+++++|+|++|+++.+++..+. .+++|++|+|++|.+. .++.+.|.++++|+++. +.++.+..+.+. ...
T Consensus 29 ~~~l~~L~Ls~N~i~~i~~~~f~--~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~-----~f~ 101 (350)
T 4ay9_X 29 PRNAIELRFVLTKLRVIQKGAFS--GFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPE-----AFQ 101 (350)
T ss_dssp CTTCSEEEEESCCCSEECTTSST--TCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTT-----SBC
T ss_pred CCCCCEEEccCCcCCCcCHHHHc--CCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCch-----hhh
Confidence 45789999999999988766777 8899999999888875 57777778888877644 445666665331 124
Q ss_pred CccccceeEecccccccccccccCcccccCCCccEEEeccCccccccccC-cccc-CCccEEEeccCcCccccCCccccc
Q 022501 84 MLTQIKSLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCNNLINLVPS-SASF-ENLTTLEVSYCQRLKNLVSSSTAK 161 (296)
Q Consensus 84 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~l-~~L~~L~l~~c~~l~~~~~~~~~~ 161 (296)
.+++|++|.++++. +..++... ......+..+.+.++..+..++.. +..+ ..++.|+++++ .++.++.. +.
T Consensus 102 ~l~~L~~L~l~~n~-l~~~~~~~---~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N-~i~~i~~~--~f 174 (350)
T 4ay9_X 102 NLPNLQYLLISNTG-IKHLPDVH---KIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKN-GIQEIHNS--AF 174 (350)
T ss_dssp CCTTCCEEEEEEEC-CSSCCCCT---TCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSS-CCCEECTT--SS
T ss_pred hccccccccccccc-cccCCchh---hcccchhhhhhhccccccccccccchhhcchhhhhhccccc-cccCCChh--hc
Confidence 58899999998754 33433221 233456778888777777777653 2333 46888888864 56666533 33
Q ss_pred CCCCccEEEEeCccccceecccccccccccccCCccceeeccCCcCcceecCCCccccCCCccEEeeccCCccccccCCc
Q 022501 162 SLVCLMKLRIDGCKLMTEIISSEGDVEEDEIVFSRLKWLSLECLDSLTSFCSGNCTFKFPSLEDLFVIDCPKMMIFSFGV 241 (296)
Q Consensus 162 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~ 241 (296)
..++|+++.+.+++.++.++.+. +..+++|++|++++. +++.++.. .+.+|+.|.+.+++.++.+|. .
T Consensus 175 ~~~~L~~l~l~~~n~l~~i~~~~------f~~l~~L~~LdLs~N-~l~~lp~~----~~~~L~~L~~l~~~~l~~lP~-l 242 (350)
T 4ay9_X 175 NGTQLDELNLSDNNNLEELPNDV------FHGASGPVILDISRT-RIHSLPSY----GLENLKKLRARSTYNLKKLPT-L 242 (350)
T ss_dssp TTEEEEEEECTTCTTCCCCCTTT------TTTEECCSEEECTTS-CCCCCCSS----SCTTCCEEECTTCTTCCCCCC-T
T ss_pred cccchhHHhhccCCcccCCCHHH------hccCcccchhhcCCC-CcCccChh----hhccchHhhhccCCCcCcCCC-c
Confidence 45689999998888888776542 334899999999987 48888763 378899999999999999985 4
Q ss_pred ccCCCcceEEcc
Q 022501 242 LSTPRLREVRKN 253 (296)
Q Consensus 242 ~~~~~L~~l~l~ 253 (296)
..+++|+.+++.
T Consensus 243 ~~l~~L~~l~l~ 254 (350)
T 4ay9_X 243 EKLVALMEASLT 254 (350)
T ss_dssp TTCCSCCEEECS
T ss_pred hhCcChhhCcCC
Confidence 488999999884
No 58
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.67 E-value=2.8e-15 Score=145.16 Aligned_cols=134 Identities=17% Similarity=0.162 Sum_probs=96.5
Q ss_pred cccceEEEeeccCccccccCCCCCCcCCCccEEEeccC-CCCccChHHHhcCCcccEEEEeccccceEeecCccccccCC
Q 022501 6 IANLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSD-KSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGM 84 (296)
Q Consensus 6 l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~-~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 84 (296)
.++|++|+|++|.++.+.+..+. .+++|++|++++| ....+++..+.++++|++|++++|.+..+.+ .....
T Consensus 23 p~~l~~LdLs~N~i~~i~~~~~~--~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p-----~~~~~ 95 (844)
T 3j0a_A 23 LNTTERLLLSFNYIRTVTASSFP--FLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHP-----DAFQG 95 (844)
T ss_dssp CTTCCEEEEESCCCCEECSSSCS--SCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECT-----TSSCS
T ss_pred CCCcCEEECCCCcCCccChhHCc--ccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCH-----hHccC
Confidence 57899999999999988777777 8999999999888 4557767778899999999999998877633 12345
Q ss_pred ccccceeEecccccccccccccCcccccCCCccEEEeccCccccccc-cCccccCCccEEEeccC
Q 022501 85 LTQIKSLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCNNLINLV-PSSASFENLTTLEVSYC 148 (296)
Q Consensus 85 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~-~~~~~l~~L~~L~l~~c 148 (296)
+++|++|.++++.....++.. ..+..+++|+.|+++++......+ ..+..+++|++|+++++
T Consensus 96 l~~L~~L~Ls~n~l~~~~~~~--~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N 158 (844)
T 3j0a_A 96 LFHLFELRLYFCGLSDAVLKD--GYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSN 158 (844)
T ss_dssp CSSCCCEECTTCCCSSCCSTT--CCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESS
T ss_pred CcccCEeeCcCCCCCcccccC--ccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCC
Confidence 888888888876433222211 114567788888888764333222 24566778888888765
No 59
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.66 E-value=6e-16 Score=127.68 Aligned_cols=200 Identities=16% Similarity=0.113 Sum_probs=153.3
Q ss_pred ccceEEEeeccCccccccCCCCCCcCCCccEEEeccCC-CCccChHHHhcCCcccEEEEec-cccceEeecCccccccCC
Q 022501 7 ANLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDK-SDNFSIGFLQRFHNVERLKLRN-SSYKEIFSNGEVEKQAGM 84 (296)
Q Consensus 7 ~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~~~~~~ 84 (296)
++|++|++++++++.+++..+. .+++|++|++++|. +..++...+.++++|++|++.+ +.++.+.+. ....
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~--~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~-----~f~~ 103 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFS--NLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPD-----ALKE 103 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTT--TCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTT-----SEEC
T ss_pred CcccEEEEeCCcceEECHHHcc--CCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHH-----HhCC
Confidence 4799999999999999776777 89999999999997 8888887889999999999998 877766421 1245
Q ss_pred ccccceeEecccccccccccccCcccccCCCcc---EEEeccCccccccccC-ccccCCcc-EEEeccCcCccccCCccc
Q 022501 85 LTQIKSLKLWELSNLLHIWEQCYKLDSVFQNLE---TLEIWWCNNLINLVPS-SASFENLT-TLEVSYCQRLKNLVSSST 159 (296)
Q Consensus 85 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~---~L~l~~~~~l~~~~~~-~~~l~~L~-~L~l~~c~~l~~~~~~~~ 159 (296)
+++|++|.++++. +..++. +..+++|+ .|+++++..+..++.. +..+++|+ .|+++++ .++.++.. .
T Consensus 104 l~~L~~L~l~~n~-l~~lp~-----~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n-~l~~i~~~-~ 175 (239)
T 2xwt_C 104 LPLLKFLGIFNTG-LKMFPD-----LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNN-GFTSVQGY-A 175 (239)
T ss_dssp CTTCCEEEEEEEC-CCSCCC-----CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSC-CCCEECTT-T
T ss_pred CCCCCEEeCCCCC-Cccccc-----cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCC-CCcccCHh-h
Confidence 8999999999864 444443 44566666 9999998677777764 67789999 9999875 45555543 2
Q ss_pred ccCCCCccEEEEeCccccceecccccccccccccC-CccceeeccCCcCcceecCCCccccCCCccEEeeccCCc
Q 022501 160 AKSLVCLMKLRIDGCKLMTEIISSEGDVEEDEIVF-SRLKWLSLECLDSLTSFCSGNCTFKFPSLEDLFVIDCPK 233 (296)
Q Consensus 160 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~L~~l~~~~~~~~~~~L~~L~l~~c~~ 233 (296)
+.. ++|++|++++|..++.++... +..+ ++|++|++++. .++.++.. .+++|+.|++.++..
T Consensus 176 ~~~-~~L~~L~L~~n~~l~~i~~~~------~~~l~~~L~~L~l~~N-~l~~l~~~----~~~~L~~L~l~~~~~ 238 (239)
T 2xwt_C 176 FNG-TKLDAVYLNKNKYLTVIDKDA------FGGVYSGPSLLDVSQT-SVTALPSK----GLEHLKELIARNTWT 238 (239)
T ss_dssp TTT-CEEEEEECTTCTTCCEECTTT------TTTCSBCCSEEECTTC-CCCCCCCT----TCTTCSEEECTTC--
T ss_pred cCC-CCCCEEEcCCCCCcccCCHHH------hhccccCCcEEECCCC-ccccCChh----HhccCceeeccCccC
Confidence 333 799999999986666664422 3337 89999999985 47777653 589999999998864
No 60
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.66 E-value=2.5e-15 Score=126.27 Aligned_cols=196 Identities=19% Similarity=0.163 Sum_probs=95.0
Q ss_pred cceEEEeeccCccccccCCCCCCcCCCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCccccccCCccc
Q 022501 8 NLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGMLTQ 87 (296)
Q Consensus 8 ~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 87 (296)
+.+++++++++++.++ .. ..++|+.|++++|.+..++...+.++++|++|++++|.+..+.+ .....+++
T Consensus 17 ~~~~l~~~~~~l~~ip-~~----~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~-----~~~~~l~~ 86 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIP-SN----IPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPA-----GIFKELKN 86 (270)
T ss_dssp TTTEEECTTSCCSSCC-SC----CCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCT-----TTTSSCTT
T ss_pred CCCEEEccCCCCCccC-CC----CCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeCh-----hhhcCCCC
Confidence 3556666666655542 11 22456666666666666555555666666666666664443311 00122445
Q ss_pred cceeEecccccccccccccCcccccCCCccEEEeccCcccccccc-CccccCCccEEEeccCcCccccCCcccccCCCCc
Q 022501 88 IKSLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCNNLINLVP-SSASFENLTTLEVSYCQRLKNLVSSSTAKSLVCL 166 (296)
Q Consensus 88 L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L 166 (296)
|++|.++++. +..++. .+..+++|++|+++++ .+...+.. .+..+++|
T Consensus 87 L~~L~l~~n~-----------------------------l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~-~~~~l~~L 135 (270)
T 2o6q_A 87 LETLWVTDNK-----------------------------LQALPIGVFDQLVNLAELRLDRN-QLKSLPPR-VFDSLTKL 135 (270)
T ss_dssp CCEEECCSSC-----------------------------CCCCCTTTTTTCSSCCEEECCSS-CCCCCCTT-TTTTCTTC
T ss_pred CCEEECCCCc-----------------------------CCcCCHhHcccccCCCEEECCCC-ccCeeCHH-HhCcCcCC
Confidence 5555554432 222222 2233445555555443 23322221 23445555
Q ss_pred cEEEEeCccccceecccccccccccccCCccceeeccCCcCcceecCCCccccCCCccEEeeccCCccccccCC-cccCC
Q 022501 167 MKLRIDGCKLMTEIISSEGDVEEDEIVFSRLKWLSLECLDSLTSFCSGNCTFKFPSLEDLFVIDCPKMMIFSFG-VLSTP 245 (296)
Q Consensus 167 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~L~~L~l~~c~~l~~~~~~-~~~~~ 245 (296)
++|++++|. +..++.. .+..+++|++|+++++. ++.++... +..+++|++|+++++ .++.+|.. +..++
T Consensus 136 ~~L~Ls~n~-l~~~~~~------~~~~l~~L~~L~L~~n~-l~~~~~~~-~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~ 205 (270)
T 2o6q_A 136 TYLSLGYNE-LQSLPKG------VFDKLTSLKELRLYNNQ-LKRVPEGA-FDKLTELKTLKLDNN-QLKRVPEGAFDSLE 205 (270)
T ss_dssp CEEECCSSC-CCCCCTT------TTTTCTTCCEEECCSSC-CSCCCTTT-TTTCTTCCEEECCSS-CCSCCCTTTTTTCT
T ss_pred CEEECCCCc-CCccCHh------HccCCcccceeEecCCc-CcEeChhH-hccCCCcCEEECCCC-cCCcCCHHHhcccc
Confidence 555555543 2222211 12225566666665542 44444322 345666777777765 45555543 34566
Q ss_pred CcceEEccc
Q 022501 246 RLREVRKNW 254 (296)
Q Consensus 246 ~L~~l~l~~ 254 (296)
+|+.++++.
T Consensus 206 ~L~~L~l~~ 214 (270)
T 2o6q_A 206 KLKMLQLQE 214 (270)
T ss_dssp TCCEEECCS
T ss_pred CCCEEEecC
Confidence 777777763
No 61
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.66 E-value=9.5e-16 Score=131.38 Aligned_cols=195 Identities=18% Similarity=0.250 Sum_probs=147.3
Q ss_pred cccceEEEeeccCccccccCCCCCCcCCCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCccccccCCc
Q 022501 6 IANLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGML 85 (296)
Q Consensus 6 l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 85 (296)
+++|++|++++++++.+. .+. .+++|+.|++++|.+..++. +..+++|++|++++|.+..+.. ...+
T Consensus 40 l~~L~~L~l~~~~i~~l~--~~~--~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~~~-------~~~l 106 (308)
T 1h6u_A 40 LDGITTLSAFGTGVTTIE--GVQ--YLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNVSA-------IAGL 106 (308)
T ss_dssp HHTCCEEECTTSCCCCCT--TGG--GCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCCGG-------GTTC
T ss_pred cCCcCEEEeeCCCccCch--hhh--ccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCchh-------hcCC
Confidence 789999999998888763 345 79999999999998888775 7889999999999997766522 3458
Q ss_pred cccceeEecccccccccccccCcccccCCCccEEEeccCccccccccCccccCCccEEEeccCcCccccCCcccccCCCC
Q 022501 86 TQIKSLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCNNLINLVPSSASFENLTTLEVSYCQRLKNLVSSSTAKSLVC 165 (296)
Q Consensus 86 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~ 165 (296)
++|+.|.++++. +..++. +..+++|+.|+++++ .+..++. +..+++|+.|++++| .+.++. .+..+++
T Consensus 107 ~~L~~L~l~~n~-l~~~~~-----l~~l~~L~~L~l~~n-~l~~~~~-l~~l~~L~~L~l~~n-~l~~~~---~l~~l~~ 174 (308)
T 1h6u_A 107 QSIKTLDLTSTQ-ITDVTP-----LAGLSNLQVLYLDLN-QITNISP-LAGLTNLQYLSIGNA-QVSDLT---PLANLSK 174 (308)
T ss_dssp TTCCEEECTTSC-CCCCGG-----GTTCTTCCEEECCSS-CCCCCGG-GGGCTTCCEEECCSS-CCCCCG---GGTTCTT
T ss_pred CCCCEEECCCCC-CCCchh-----hcCCCCCCEEECCCC-ccCcCcc-ccCCCCccEEEccCC-cCCCCh---hhcCCCC
Confidence 999999999875 344432 667889999999986 4555544 667889999999886 455553 2678899
Q ss_pred ccEEEEeCccccceecccccccccccccCCccceeeccCCcCcceecCCCccccCCCccEEeeccCCccccccC
Q 022501 166 LMKLRIDGCKLMTEIISSEGDVEEDEIVFSRLKWLSLECLDSLTSFCSGNCTFKFPSLEDLFVIDCPKMMIFSF 239 (296)
Q Consensus 166 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~L~~L~l~~c~~l~~~~~ 239 (296)
|++|++++|. +..+.. +..+++|++|+++++. ++.++. +..+++|+.|++++++ ++..|.
T Consensus 175 L~~L~l~~n~-l~~~~~--------l~~l~~L~~L~L~~N~-l~~~~~---l~~l~~L~~L~l~~N~-i~~~~~ 234 (308)
T 1h6u_A 175 LTTLKADDNK-ISDISP--------LASLPNLIEVHLKNNQ-ISDVSP---LANTSNLFIVTLTNQT-ITNQPV 234 (308)
T ss_dssp CCEEECCSSC-CCCCGG--------GGGCTTCCEEECTTSC-CCBCGG---GTTCTTCCEEEEEEEE-EECCCE
T ss_pred CCEEECCCCc-cCcChh--------hcCCCCCCEEEccCCc-cCcccc---ccCCCCCCEEEccCCe-eecCCe
Confidence 9999999875 333332 3348899999999874 566553 4678999999999875 555443
No 62
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.66 E-value=3.8e-15 Score=140.88 Aligned_cols=64 Identities=13% Similarity=0.221 Sum_probs=34.2
Q ss_pred ccceEEEeeccCccccccCCCCCCcCC--CccEEEeccCCCCccChHHHhcCCcccEEEEeccccceE
Q 022501 7 ANLEELKLSGKDITMICHDHLPKHLFQ--NLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEI 72 (296)
Q Consensus 7 ~~L~~L~L~~~~~~~~~~~~~~~~~l~--~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 72 (296)
++|++|+++++.+.++.+..+. .++ +|+.|++++|.+..+++..+..+++|++|++.+|.+.+.
T Consensus 222 ~~L~~L~L~~n~l~~~~~~~~~--~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 287 (680)
T 1ziw_A 222 TSIRNLSLSNSQLSTTSNTTFL--GLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHL 287 (680)
T ss_dssp SCCCEEECTTSCCCEECTTTTG--GGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEE
T ss_pred ccccEEEccCCcccccChhHhh--ccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCcc
Confidence 5566666666555555444444 332 366666655555554444455555666666655554443
No 63
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.66 E-value=2.8e-16 Score=143.03 Aligned_cols=212 Identities=15% Similarity=0.077 Sum_probs=161.1
Q ss_pred ccccceEEEeeccCccccccCCCCCCcCCCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCccccccCC
Q 022501 5 VIANLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGM 84 (296)
Q Consensus 5 ~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 84 (296)
.+++|++|+|++|.+.+..+ +. .+++|+.|++++|.+..++. .++|++|++++|.+..+.+ ..
T Consensus 56 ~l~~L~~L~Ls~N~l~~~~~--l~--~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L~L~~N~l~~~~~--------~~ 118 (487)
T 3oja_A 56 PFTKLELLNLSSNVLYETLD--LE--SLSTLRTLDLNNNYVQELLV-----GPSIETLHAANNNISRVSC--------SR 118 (487)
T ss_dssp TCTTCCEEECTTSCCEEEEE--CT--TCTTCCEEECCSSEEEEEEE-----CTTCCEEECCSSCCCCEEE--------CC
T ss_pred CCCCCCEEEeeCCCCCCCcc--cc--cCCCCCEEEecCCcCCCCCC-----CCCcCEEECcCCcCCCCCc--------cc
Confidence 47899999999999988754 55 89999999999998887763 4899999999998888755 34
Q ss_pred ccccceeEecccccccccccccCcccccCCCccEEEeccCccccccccCcc-ccCCccEEEeccCcCccccCCcccccCC
Q 022501 85 LTQIKSLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCNNLINLVPSSA-SFENLTTLEVSYCQRLKNLVSSSTAKSL 163 (296)
Q Consensus 85 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~-~l~~L~~L~l~~c~~l~~~~~~~~~~~l 163 (296)
+++|+.|.++++..-...+.. +..+++|+.|+++++......+..+. .+++|+.|+++++. ++..+ ....+
T Consensus 119 l~~L~~L~L~~N~l~~~~~~~----~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~-l~~~~---~~~~l 190 (487)
T 3oja_A 119 GQGKKNIYLANNKITMLRDLD----EGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF-IYDVK---GQVVF 190 (487)
T ss_dssp CSSCEEEECCSSCCCSGGGBC----GGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC-CCEEE---CCCCC
T ss_pred cCCCCEEECCCCCCCCCCchh----hcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCc-ccccc---ccccC
Confidence 789999999987543322323 56789999999999754444454443 68999999999865 55553 23468
Q ss_pred CCccEEEEeCccccceecccccccccccccCCccceeeccCCcCcceecCCCccccCCCccEEeeccCCcc-ccccCCcc
Q 022501 164 VCLMKLRIDGCKLMTEIISSEGDVEEDEIVFSRLKWLSLECLDSLTSFCSGNCTFKFPSLEDLFVIDCPKM-MIFSFGVL 242 (296)
Q Consensus 164 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~L~~L~l~~c~~l-~~~~~~~~ 242 (296)
++|++|++++|. +..++.... .+++|+.|+++++. ++.++.. +..+++|+.|++++++.. ..+|....
T Consensus 191 ~~L~~L~Ls~N~-l~~~~~~~~-------~l~~L~~L~Ls~N~-l~~lp~~--l~~l~~L~~L~l~~N~l~c~~~~~~~~ 259 (487)
T 3oja_A 191 AKLKTLDLSSNK-LAFMGPEFQ-------SAAGVTWISLRNNK-LVLIEKA--LRFSQNLEHFDLRGNGFHCGTLRDFFS 259 (487)
T ss_dssp TTCCEEECCSSC-CCEECGGGG-------GGTTCSEEECTTSC-CCEECTT--CCCCTTCCEEECTTCCBCHHHHHHHHT
T ss_pred CCCCEEECCCCC-CCCCCHhHc-------CCCCccEEEecCCc-Ccccchh--hccCCCCCEEEcCCCCCcCcchHHHHH
Confidence 999999999975 444544333 38999999999964 7777663 467899999999998754 34555555
Q ss_pred cCCCcceEEc
Q 022501 243 STPRLREVRK 252 (296)
Q Consensus 243 ~~~~L~~l~l 252 (296)
.++.|+.+++
T Consensus 260 ~l~~L~~l~~ 269 (487)
T 3oja_A 260 KNQRVQTVAK 269 (487)
T ss_dssp TCHHHHHHHH
T ss_pred hCCCCcEEec
Confidence 6677776666
No 64
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.66 E-value=2.3e-15 Score=139.35 Aligned_cols=106 Identities=13% Similarity=0.137 Sum_probs=73.2
Q ss_pred cccceEEEeeccCccccccCCCCCCcCCCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCccccccCCc
Q 022501 6 IANLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGML 85 (296)
Q Consensus 6 l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 85 (296)
.++|++|++++|.+.++.+..+. .+++|++|++++|.+..+++..+.++++|++|++++|.+..+... .+
T Consensus 51 ~~~L~~L~Ls~N~i~~~~~~~~~--~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--------~l 120 (562)
T 3a79_B 51 PPRTKALSLSQNSISELRMPDIS--FLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCC--------PM 120 (562)
T ss_dssp CTTCCEEECCSSCCCCCCGGGTT--TCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEECSC--------CC
T ss_pred CCCcCEEECCCCCccccChhhhc--cCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCccCcc--------cc
Confidence 46788888888888887666666 788888888888888877666778888888888888877765331 46
Q ss_pred cccceeEecccccccccccccCcccccCCCccEEEeccC
Q 022501 86 TQIKSLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWC 124 (296)
Q Consensus 86 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~ 124 (296)
++|++|+++++. +..++. ...+..+++|+.|+++++
T Consensus 121 ~~L~~L~Ls~N~-l~~l~~--p~~~~~l~~L~~L~L~~n 156 (562)
T 3a79_B 121 ASLRHLDLSFND-FDVLPV--CKEFGNLTKLTFLGLSAA 156 (562)
T ss_dssp TTCSEEECCSSC-CSBCCC--CGGGGGCTTCCEEEEECS
T ss_pred ccCCEEECCCCC-ccccCc--hHhhcccCcccEEecCCC
Confidence 777777777654 222221 011455666666666654
No 65
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.66 E-value=5.2e-15 Score=129.03 Aligned_cols=218 Identities=16% Similarity=0.116 Sum_probs=162.7
Q ss_pred eEEEeeccCccccccCCCCCCcCCCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCccccccCCccccc
Q 022501 10 EELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGMLTQIK 89 (296)
Q Consensus 10 ~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~ 89 (296)
++++.++++++.++ .. -.+++++|++++|.+..+|.+.|.++++|++|++++|.+.+.++...+ ..+++++
T Consensus 12 ~~v~C~~~~Lt~iP-~~----l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f----~~L~~l~ 82 (350)
T 4ay9_X 12 RVFLCQESKVTEIP-SD----LPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVF----SNLPKLH 82 (350)
T ss_dssp TEEEEESTTCCSCC-TT----CCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSB----CSCTTCC
T ss_pred CEEEecCCCCCccC-cC----cCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHh----hcchhhh
Confidence 46777778888774 22 347899999999999999988899999999999999987665553322 3477888
Q ss_pred eeEecccccccccccccCcccccCCCccEEEeccCcccccccc-CccccCCccEEEeccCcCccccCCcccccCCCCccE
Q 022501 90 SLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCNNLINLVP-SSASFENLTTLEVSYCQRLKNLVSSSTAKSLVCLMK 168 (296)
Q Consensus 90 ~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~ 168 (296)
.+.+.++..+..++... +..+++|+.|+++++ .+..++. ......++..+++.++..+..++..........++.
T Consensus 83 ~~l~~~~N~l~~l~~~~---f~~l~~L~~L~l~~n-~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~ 158 (350)
T 4ay9_X 83 EIRIEKANNLLYINPEA---FQNLPNLQYLLISNT-GIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVI 158 (350)
T ss_dssp EEEEEEETTCCEECTTS---BCCCTTCCEEEEEEE-CCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEE
T ss_pred hhhcccCCcccccCchh---hhhcccccccccccc-ccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhh
Confidence 77777677777775433 567899999999986 4554544 344456788899988888887765433333457899
Q ss_pred EEEeCccccceecccccccccccccCCccceeeccCCcCcceecCCCccccCCCccEEeeccCCccccccCCcccCCCcc
Q 022501 169 LRIDGCKLMTEIISSEGDVEEDEIVFSRLKWLSLECLDSLTSFCSGNCTFKFPSLEDLFVIDCPKMMIFSFGVLSTPRLR 248 (296)
Q Consensus 169 L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~ 248 (296)
|+++++. ++++...... .++|+++.+.++..++.++.+. +..+++|+.|+++++ .++.+|.. .+.+|+
T Consensus 159 L~L~~N~-i~~i~~~~f~-------~~~L~~l~l~~~n~l~~i~~~~-f~~l~~L~~LdLs~N-~l~~lp~~--~~~~L~ 226 (350)
T 4ay9_X 159 LWLNKNG-IQEIHNSAFN-------GTQLDELNLSDNNNLEELPNDV-FHGASGPVILDISRT-RIHSLPSY--GLENLK 226 (350)
T ss_dssp EECCSSC-CCEECTTSST-------TEEEEEEECTTCTTCCCCCTTT-TTTEECCSEEECTTS-CCCCCCSS--SCTTCC
T ss_pred hcccccc-ccCCChhhcc-------ccchhHHhhccCCcccCCCHHH-hccCcccchhhcCCC-CcCccChh--hhccch
Confidence 9998864 5566554333 6789999999888899988755 678899999999997 68888875 345666
Q ss_pred eEEc
Q 022501 249 EVRK 252 (296)
Q Consensus 249 ~l~l 252 (296)
.|.+
T Consensus 227 ~L~~ 230 (350)
T 4ay9_X 227 KLRA 230 (350)
T ss_dssp EEEC
T ss_pred Hhhh
Confidence 6665
No 66
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.65 E-value=9.3e-16 Score=141.48 Aligned_cols=182 Identities=23% Similarity=0.239 Sum_probs=133.8
Q ss_pred cccceEEEeeccCccccccCCCCCCcCCCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCccccccCCc
Q 022501 6 IANLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGML 85 (296)
Q Consensus 6 l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 85 (296)
+++|++|++++++++++.+..+. .+++|++|++++|.+..+++..+.++++|++|++++|.+.++.+ ...+.+
T Consensus 25 ~~~L~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-----~~~~~l 97 (549)
T 2z81_A 25 TAAMKSLDLSFNKITYIGHGDLR--ACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSS-----SWFGPL 97 (549)
T ss_dssp CTTCCEEECCSSCCCEECSSTTS--SCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCH-----HHHTTC
T ss_pred CCCccEEECcCCccCccChhhhh--cCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCH-----HHhccC
Confidence 57899999999999998777777 89999999999999998887788999999999999998776543 113558
Q ss_pred cccceeEecccccccccccccCcccccCCCccEEEeccCcccccccc-CccccCCccEEEeccCcCccccCCcccccCCC
Q 022501 86 TQIKSLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCNNLINLVP-SSASFENLTTLEVSYCQRLKNLVSSSTAKSLV 164 (296)
Q Consensus 86 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~ 164 (296)
++|++|+++++.. ..++. ...+..+++|++|+++++..++.++. .+..+++|++|+++++. +....+. .+..++
T Consensus 98 ~~L~~L~Ls~n~l-~~~~~--~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~-~l~~l~ 172 (549)
T 2z81_A 98 SSLKYLNLMGNPY-QTLGV--TSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALS-LRNYQSQ-SLKSIR 172 (549)
T ss_dssp TTCCEEECTTCCC-SSSCS--SCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETT-CCEECTT-TTTTCS
T ss_pred CCCcEEECCCCcc-cccch--hhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCc-ccccChh-hhhccc
Confidence 9999999998753 32211 11267789999999999876777764 57778999999999865 4433222 456778
Q ss_pred CccEEEEeCccccceecccccccccccccCCccceeeccCCc
Q 022501 165 CLMKLRIDGCKLMTEIISSEGDVEEDEIVFSRLKWLSLECLD 206 (296)
Q Consensus 165 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 206 (296)
+|++|+++.+.. ..++... ...+++|++|+++++.
T Consensus 173 ~L~~L~l~~n~~-~~~~~~~------~~~l~~L~~L~L~~n~ 207 (549)
T 2z81_A 173 DIHHLTLHLSES-AFLLEIF------ADILSSVRYLELRDTN 207 (549)
T ss_dssp EEEEEEEECSBS-TTHHHHH------HHSTTTBSEEEEESCB
T ss_pred cCceEecccCcc-cccchhh------HhhcccccEEEccCCc
Confidence 888888877653 1111110 1126677777777653
No 67
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.65 E-value=2.5e-15 Score=126.30 Aligned_cols=180 Identities=17% Similarity=0.214 Sum_probs=121.6
Q ss_pred cccceEEEeeccCccccccCCCCCCcCCCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCccccccCCc
Q 022501 6 IANLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGML 85 (296)
Q Consensus 6 l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 85 (296)
.+++++|+++++++..+.+..+. .+++|++|++++|.+..++...+.++++|++|++++|.+..+.+ .....+
T Consensus 36 ~~~l~~L~l~~n~l~~~~~~~~~--~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~-----~~~~~l 108 (270)
T 2o6q_A 36 PADTKKLDLQSNKLSSLPSKAFH--RLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPI-----GVFDQL 108 (270)
T ss_dssp CTTCSEEECCSSCCSCCCTTSSS--SCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCT-----TTTTTC
T ss_pred CCCCCEEECcCCCCCeeCHHHhc--CCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCH-----hHcccc
Confidence 45799999999999998766777 89999999999999999998888999999999999997765432 112447
Q ss_pred cccceeEecccccccccccccCcccccCCCccEEEeccCccccccccC-ccccCCccEEEeccCcCccccCCcccccCCC
Q 022501 86 TQIKSLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCNNLINLVPS-SASFENLTTLEVSYCQRLKNLVSSSTAKSLV 164 (296)
Q Consensus 86 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~ 164 (296)
++|++|.++++. +..++... +..+++|+.|+++++ .+..++.. +..+++|++|+++++ .+..++.. .+..++
T Consensus 109 ~~L~~L~l~~n~-l~~~~~~~---~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~-~~~~l~ 181 (270)
T 2o6q_A 109 VNLAELRLDRNQ-LKSLPPRV---FDSLTKLTYLSLGYN-ELQSLPKGVFDKLTSLKELRLYNN-QLKRVPEG-AFDKLT 181 (270)
T ss_dssp SSCCEEECCSSC-CCCCCTTT---TTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTT-TTTTCT
T ss_pred cCCCEEECCCCc-cCeeCHHH---hCcCcCCCEEECCCC-cCCccCHhHccCCcccceeEecCC-cCcEeChh-HhccCC
Confidence 888888888753 33332221 456777888888775 34444443 456777777777765 34444322 345566
Q ss_pred CccEEEEeCccccceecccccccccccccCCccceeeccCCc
Q 022501 165 CLMKLRIDGCKLMTEIISSEGDVEEDEIVFSRLKWLSLECLD 206 (296)
Q Consensus 165 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 206 (296)
+|++|++++|. +..++.. .+..+++|+.|++++.+
T Consensus 182 ~L~~L~L~~N~-l~~~~~~------~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 182 ELKTLKLDNNQ-LKRVPEG------AFDSLEKLKMLQLQENP 216 (270)
T ss_dssp TCCEEECCSSC-CSCCCTT------TTTTCTTCCEEECCSSC
T ss_pred CcCEEECCCCc-CCcCCHH------HhccccCCCEEEecCCC
Confidence 77777777653 2322221 12235666666666544
No 68
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.64 E-value=1.3e-15 Score=146.64 Aligned_cols=235 Identities=13% Similarity=0.051 Sum_probs=149.0
Q ss_pred ccccceEEEeeccCccccccCCCCCCcCCCccEEEeccCC-CCc--cChHHHhcC-------CcccEEEEeccccceEee
Q 022501 5 VIANLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDK-SDN--FSIGFLQRF-------HNVERLKLRNSSYKEIFS 74 (296)
Q Consensus 5 ~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~--~~~~~~~~l-------~~L~~L~l~~~~~~~~~~ 74 (296)
.+++|++|+|++|++.+..|..+. .+++|+.|++++|. +.. +|. .+..+ ++|++|++++|.+..+..
T Consensus 489 ~L~~L~~L~Ls~N~l~~~iP~~l~--~L~~L~~L~Ls~N~~lsg~~iP~-~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~ 565 (876)
T 4ecn_A 489 NLKDLTDVELYNCPNMTQLPDFLY--DLPELQSLNIACNRGISAAQLKA-DWTRLADDEDTGPKIQIFYMGYNNLEEFPA 565 (876)
T ss_dssp GCTTCCEEEEESCTTCCSCCGGGG--GCSSCCEEECTTCTTSCHHHHHH-HHHHHHHCTTTTTTCCEEECCSSCCCBCCC
T ss_pred cCCCCCEEECcCCCCCccChHHHh--CCCCCCEEECcCCCCcccccchH-HHHhhhhcccccCCccEEEeeCCcCCccCC
Confidence 478899999999886665566677 89999999998886 543 554 33444 499999999987764322
Q ss_pred cCccccccCCccccceeEecccccccccccccCcccccCCCccEEEeccCccccccccCccccCC-ccEEEeccCcCccc
Q 022501 75 NGEVEKQAGMLTQIKSLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCNNLINLVPSSASFEN-LTTLEVSYCQRLKN 153 (296)
Q Consensus 75 ~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~-L~~L~l~~c~~l~~ 153 (296)
.. ....+++|+.|.++++.. ..++ . +..+++|+.|+++++. +..+|..+..+++ |+.|+++++. +..
T Consensus 566 ~~----~l~~L~~L~~L~Ls~N~l-~~lp-~----~~~L~~L~~L~Ls~N~-l~~lp~~l~~l~~~L~~L~Ls~N~-L~~ 633 (876)
T 4ecn_A 566 SA----SLQKMVKLGLLDCVHNKV-RHLE-A----FGTNVKLTDLKLDYNQ-IEEIPEDFCAFTDQVEGLGFSHNK-LKY 633 (876)
T ss_dssp HH----HHTTCTTCCEEECTTSCC-CBCC-C----CCTTSEESEEECCSSC-CSCCCTTSCEECTTCCEEECCSSC-CCS
T ss_pred hh----hhhcCCCCCEEECCCCCc-ccch-h----hcCCCcceEEECcCCc-cccchHHHhhccccCCEEECcCCC-CCc
Confidence 00 334588888888887653 3555 2 6667788888887764 4466766777777 8888887754 444
Q ss_pred cCCcccccCC--CCccEEEEeCccccceeccc---cc-------------------ccccccccCCccceeeccCCcCcc
Q 022501 154 LVSSSTAKSL--VCLMKLRIDGCKLMTEIISS---EG-------------------DVEEDEIVFSRLKWLSLECLDSLT 209 (296)
Q Consensus 154 ~~~~~~~~~l--~~L~~L~l~~~~~~~~~~~~---~~-------------------~~~~~~~~~~~L~~L~l~~~~~L~ 209 (296)
++. .+... ++|+.|++++|.....++.- .+ -....+..+++|+.|+++++ .++
T Consensus 634 lp~--~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N-~L~ 710 (876)
T 4ecn_A 634 IPN--IFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNN-LMT 710 (876)
T ss_dssp CCS--CCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSC-CCS
T ss_pred Cch--hhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCC-cCC
Confidence 432 12222 33666666665432211100 00 00001123677888888775 355
Q ss_pred eecCCCcc------ccCCCccEEeeccCCccccccCCcc--cCCCcceEEcccCCcc
Q 022501 210 SFCSGNCT------FKFPSLEDLFVIDCPKMMIFSFGVL--STPRLREVRKNWGLDK 258 (296)
Q Consensus 210 ~l~~~~~~------~~~~~L~~L~l~~c~~l~~~~~~~~--~~~~L~~l~l~~~~~~ 258 (296)
.++..... .++++|+.|++++| .++.+|..+. .+++|+.|+++.+...
T Consensus 711 ~ip~~~~~~~~~~l~nl~~L~~L~Ls~N-~L~~lp~~l~~~~l~~L~~L~Ls~N~L~ 766 (876)
T 4ecn_A 711 SIPENSLKPKDGNYKNTYLLTTIDLRFN-KLTSLSDDFRATTLPYLSNMDVSYNCFS 766 (876)
T ss_dssp CCCTTSSSCTTSCCTTGGGCCEEECCSS-CCCCCCGGGSTTTCTTCCEEECCSSCCS
T ss_pred ccChHHhccccccccccCCccEEECCCC-CCccchHHhhhccCCCcCEEEeCCCCCC
Confidence 55543211 12348999999987 5668887776 7899999999765543
No 69
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.64 E-value=1.2e-15 Score=130.93 Aligned_cols=227 Identities=17% Similarity=0.090 Sum_probs=129.1
Q ss_pred ceEEEeeccCccccccCCCC------CCcCCCccEEEeccCCCC-ccChHHH-hcCCcccEEEEeccccceEeecCcccc
Q 022501 9 LEELKLSGKDITMICHDHLP------KHLFQNLKSLEIVSDKSD-NFSIGFL-QRFHNVERLKLRNSSYKEIFSNGEVEK 80 (296)
Q Consensus 9 L~~L~L~~~~~~~~~~~~~~------~~~l~~L~~L~l~~~~~~-~~~~~~~-~~l~~L~~L~l~~~~~~~~~~~~~~~~ 80 (296)
|++|+++++.+......... ...+++|++|++++|.+. .+|..++ ..+++|++|++++|.+.+. + ..+..
T Consensus 65 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~-~~~~~ 142 (312)
T 1wwl_A 65 IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-D-AWLAE 142 (312)
T ss_dssp HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-S-SHHHH
T ss_pred HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-h-HHHHH
Confidence 56666666665443100000 002667777777776665 4444332 6677777777777766554 1 11111
Q ss_pred -ccCCccccceeEecccccccccccccCcccccCCCccEEEeccCccccc--cccCc--cccCCccEEEeccCcCccccC
Q 022501 81 -QAGMLTQIKSLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCNNLIN--LVPSS--ASFENLTTLEVSYCQRLKNLV 155 (296)
Q Consensus 81 -~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~--~~~~~--~~l~~L~~L~l~~c~~l~~~~ 155 (296)
....+++|++|.++++.. ..++... +..+++|+.|+++++...+. ++... ..+++|++|+++++. ++.+.
T Consensus 143 l~~~~~~~L~~L~L~~N~l-~~~~~~~---~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~ 217 (312)
T 1wwl_A 143 LQQWLKPGLKVLSIAQAHS-LNFSCEQ---VRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAG-METPS 217 (312)
T ss_dssp HHTTCCTTCCEEEEESCSC-CCCCTTT---CCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSC-CCCHH
T ss_pred HHHhhcCCCcEEEeeCCCC-ccchHHH---hccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCc-CcchH
Confidence 000126777777776543 2332111 55677788888877654332 22222 557788888887753 43221
Q ss_pred C--cccccCCCCccEEEEeCccccceecccccccccccccCCccceeeccCCcCcceecCCCccccCCCccEEeeccCCc
Q 022501 156 S--SSTAKSLVCLMKLRIDGCKLMTEIISSEGDVEEDEIVFSRLKWLSLECLDSLTSFCSGNCTFKFPSLEDLFVIDCPK 233 (296)
Q Consensus 156 ~--~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~L~~L~l~~c~~ 233 (296)
. ...+..+++|++|++++|......+.. ....+++|++|+++++. ++.++... . ++|++|+++++ .
T Consensus 218 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~------~~~~l~~L~~L~Ls~N~-l~~ip~~~--~--~~L~~L~Ls~N-~ 285 (312)
T 1wwl_A 218 GVCSALAAARVQLQGLDLSHNSLRDAAGAP------SCDWPSQLNSLNLSFTG-LKQVPKGL--P--AKLSVLDLSYN-R 285 (312)
T ss_dssp HHHHHHHHTTCCCSEEECTTSCCCSSCCCS------CCCCCTTCCEEECTTSC-CSSCCSSC--C--SEEEEEECCSS-C
T ss_pred HHHHHHHhcCCCCCEEECCCCcCCcccchh------hhhhcCCCCEEECCCCc-cChhhhhc--c--CCceEEECCCC-C
Confidence 1 112346678888888877543322111 12236788888888764 56655432 1 77889999886 5
Q ss_pred cccccCCcccCCCcceEEcccC
Q 022501 234 MMIFSFGVLSTPRLREVRKNWG 255 (296)
Q Consensus 234 l~~~~~~~~~~~~L~~l~l~~~ 255 (296)
++.+|. +..+++|++++++.+
T Consensus 286 l~~~p~-~~~l~~L~~L~L~~N 306 (312)
T 1wwl_A 286 LDRNPS-PDELPQVGNLSLKGN 306 (312)
T ss_dssp CCSCCC-TTTSCEEEEEECTTC
T ss_pred CCCChh-HhhCCCCCEEeccCC
Confidence 777766 567888888888744
No 70
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.63 E-value=1.9e-14 Score=133.21 Aligned_cols=221 Identities=16% Similarity=0.138 Sum_probs=157.2
Q ss_pred ccceEEEeeccCccccccCCC-CC--CcCCCccEEEeccCCCCccChHHHhcC---CcccEEEEeccccceEeecCcccc
Q 022501 7 ANLEELKLSGKDITMICHDHL-PK--HLFQNLKSLEIVSDKSDNFSIGFLQRF---HNVERLKLRNSSYKEIFSNGEVEK 80 (296)
Q Consensus 7 ~~L~~L~L~~~~~~~~~~~~~-~~--~~l~~L~~L~l~~~~~~~~~~~~~~~l---~~L~~L~l~~~~~~~~~~~~~~~~ 80 (296)
++|++|+++++.+.+..+..+ .. ..++.|+.+++..+.. .+|...+..+ .+|++|++++|.+.....
T Consensus 276 ~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~-~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~------ 348 (562)
T 3a79_B 276 RPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF-LFSKEALYSVFAEMNIKMLSISDTPFIHMVC------ 348 (562)
T ss_dssp SSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC-SSCHHHHHHHHHTCCCSEEEEESSCCCCCCC------
T ss_pred ccccEEEEeccEeeccccchhhhcccccchheehhhccccee-ecChhhhhhhhccCcceEEEccCCCcccccC------
Confidence 378888888887763323333 10 1556666666666655 6675444333 679999999996644321
Q ss_pred ccCCccccceeEecccccccccccccCcccccCCCccEEEeccCcccccc---ccCccccCCccEEEeccCcCccc-cCC
Q 022501 81 QAGMLTQIKSLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCNNLINL---VPSSASFENLTTLEVSYCQRLKN-LVS 156 (296)
Q Consensus 81 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~---~~~~~~l~~L~~L~l~~c~~l~~-~~~ 156 (296)
...+++|++|.++++.....++.. +..+++|+.|+++++ .+..+ +..+..+++|+.|+++++. +.. ++.
T Consensus 349 -~~~l~~L~~L~l~~n~l~~~~~~~----~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~ 421 (562)
T 3a79_B 349 -PPSPSSFTFLNFTQNVFTDSVFQG----CSTLKRLQTLILQRN-GLKNFFKVALMTKNMSSLETLDVSLNS-LNSHAYD 421 (562)
T ss_dssp -CSSCCCCCEEECCSSCCCTTTTTT----CCSCSSCCEEECCSS-CCCBTTHHHHTTTTCTTCCEEECTTSC-CBSCCSS
T ss_pred -ccCCCCceEEECCCCccccchhhh----hcccCCCCEEECCCC-CcCCcccchhhhcCCCCCCEEECCCCc-CCCccCh
Confidence 145899999999987644434433 677899999999986 44443 3456778999999999865 444 433
Q ss_pred cccccCCCCccEEEEeCccccceecccccccccccccC-CccceeeccCCcCcceecCCCccccCCCccEEeeccCCccc
Q 022501 157 SSTAKSLVCLMKLRIDGCKLMTEIISSEGDVEEDEIVF-SRLKWLSLECLDSLTSFCSGNCTFKFPSLEDLFVIDCPKMM 235 (296)
Q Consensus 157 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~L~~l~~~~~~~~~~~L~~L~l~~c~~l~ 235 (296)
..+..+++|++|++++|.....++. .+ ++|++|+++++ +++.++... ..+++|++|+++++ .++
T Consensus 422 -~~~~~l~~L~~L~l~~n~l~~~~~~----------~l~~~L~~L~L~~N-~l~~ip~~~--~~l~~L~~L~L~~N-~l~ 486 (562)
T 3a79_B 422 -RTCAWAESILVLNLSSNMLTGSVFR----------CLPPKVKVLDLHNN-RIMSIPKDV--THLQALQELNVASN-QLK 486 (562)
T ss_dssp -CCCCCCTTCCEEECCSSCCCGGGGS----------SCCTTCSEEECCSS-CCCCCCTTT--TSSCCCSEEECCSS-CCC
T ss_pred -hhhcCcccCCEEECCCCCCCcchhh----------hhcCcCCEEECCCC-cCcccChhh--cCCCCCCEEECCCC-CCC
Confidence 2467889999999999875433322 13 69999999997 578877654 48999999999997 577
Q ss_pred cccCC-cccCCCcceEEcccCC
Q 022501 236 IFSFG-VLSTPRLREVRKNWGL 256 (296)
Q Consensus 236 ~~~~~-~~~~~~L~~l~l~~~~ 256 (296)
.+|.. +..+++|+.++++.+.
T Consensus 487 ~l~~~~~~~l~~L~~L~l~~N~ 508 (562)
T 3a79_B 487 SVPDGVFDRLTSLQYIWLHDNP 508 (562)
T ss_dssp CCCTTSTTTCTTCCCEECCSCC
T ss_pred CCCHHHHhcCCCCCEEEecCCC
Confidence 88887 6788999999998543
No 71
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.62 E-value=6.2e-15 Score=126.29 Aligned_cols=189 Identities=18% Similarity=0.224 Sum_probs=148.5
Q ss_pred cCCCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCccccccCCccccceeEecccccccccccccCccc
Q 022501 31 LFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGMLTQIKSLKLWELSNLLHIWEQCYKLD 110 (296)
Q Consensus 31 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~ 110 (296)
.+++|+.|++.+|.+..++ .+..+++|++|++++|.+..+.+ ...+++|++|.++++. +..++ . +
T Consensus 39 ~l~~L~~L~l~~~~i~~l~--~~~~l~~L~~L~L~~n~i~~~~~-------~~~l~~L~~L~L~~n~-l~~~~-~----~ 103 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVTTIE--GVQYLNNLIGLELKDNQITDLAP-------LKNLTKITELELSGNP-LKNVS-A----I 103 (308)
T ss_dssp HHHTCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG-------GTTCCSCCEEECCSCC-CSCCG-G----G
T ss_pred HcCCcCEEEeeCCCccCch--hhhccCCCCEEEccCCcCCCChh-------HccCCCCCEEEccCCc-CCCch-h----h
Confidence 6899999999999888887 47889999999999998776644 3459999999999875 44543 2 6
Q ss_pred ccCCCccEEEeccCccccccccCccccCCccEEEeccCcCccccCCcccccCCCCccEEEEeCccccceecccccccccc
Q 022501 111 SVFQNLETLEIWWCNNLINLVPSSASFENLTTLEVSYCQRLKNLVSSSTAKSLVCLMKLRIDGCKLMTEIISSEGDVEED 190 (296)
Q Consensus 111 ~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 190 (296)
..+++|+.|+++++. +..++. +..+++|++|+++++. +.... .+..+++|++|++++|. +..+..
T Consensus 104 ~~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~l~~n~-l~~~~---~l~~l~~L~~L~l~~n~-l~~~~~-------- 168 (308)
T 1h6u_A 104 AGLQSIKTLDLTSTQ-ITDVTP-LAGLSNLQVLYLDLNQ-ITNIS---PLAGLTNLQYLSIGNAQ-VSDLTP-------- 168 (308)
T ss_dssp TTCTTCCEEECTTSC-CCCCGG-GTTCTTCCEEECCSSC-CCCCG---GGGGCTTCCEEECCSSC-CCCCGG--------
T ss_pred cCCCCCCEEECCCCC-CCCchh-hcCCCCCCEEECCCCc-cCcCc---cccCCCCccEEEccCCc-CCCChh--------
Confidence 778999999999974 555553 6778999999999864 55553 26788999999999985 333333
Q ss_pred cccCCccceeeccCCcCcceecCCCccccCCCccEEeeccCCccccccCCcccCCCcceEEcccC
Q 022501 191 EIVFSRLKWLSLECLDSLTSFCSGNCTFKFPSLEDLFVIDCPKMMIFSFGVLSTPRLREVRKNWG 255 (296)
Q Consensus 191 ~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~l~l~~~ 255 (296)
+..+++|+.|+++++. +++++. +..+++|++|++++| .++.++. +..+++|+.++++.+
T Consensus 169 l~~l~~L~~L~l~~n~-l~~~~~---l~~l~~L~~L~L~~N-~l~~~~~-l~~l~~L~~L~l~~N 227 (308)
T 1h6u_A 169 LANLSKLTTLKADDNK-ISDISP---LASLPNLIEVHLKNN-QISDVSP-LANTSNLFIVTLTNQ 227 (308)
T ss_dssp GTTCTTCCEEECCSSC-CCCCGG---GGGCTTCCEEECTTS-CCCBCGG-GTTCTTCCEEEEEEE
T ss_pred hcCCCCCCEEECCCCc-cCcChh---hcCCCCCCEEEccCC-ccCcccc-ccCCCCCCEEEccCC
Confidence 3348999999999874 666654 468899999999998 4666664 568899999999753
No 72
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.62 E-value=1.1e-16 Score=138.67 Aligned_cols=225 Identities=17% Similarity=0.167 Sum_probs=158.5
Q ss_pred ceEEEeeccCccccccCCCCCCcC--CCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCccccccCCcc
Q 022501 9 LEELKLSGKDITMICHDHLPKHLF--QNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGMLT 86 (296)
Q Consensus 9 L~~L~L~~~~~~~~~~~~~~~~~l--~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 86 (296)
++.++++++++.. ..+. .+ ++++.|++.++.+...+.. +..+++|++|++++|.+... ++......++
T Consensus 49 ~~~l~l~~~~~~~---~~~~--~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~----~~~~~~~~~~ 118 (336)
T 2ast_B 49 WQTLDLTGKNLHP---DVTG--RLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVS----TLHGILSQCS 118 (336)
T ss_dssp SSEEECTTCBCCH---HHHH--HHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHH----HHHHHHTTBC
T ss_pred heeeccccccCCH---HHHH--hhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHH----HHHHHHhhCC
Confidence 6788888876553 2234 45 8999999988877655443 34689999999999954321 1233345699
Q ss_pred ccceeEecccccccccccccCcccccCCCccEEEeccCccccc--cccCccccCCccEEEeccCcCccccCCcccccCCC
Q 022501 87 QIKSLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCNNLIN--LVPSSASFENLTTLEVSYCQRLKNLVSSSTAKSLV 164 (296)
Q Consensus 87 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~--~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~ 164 (296)
+|++|+++++......+.. +..+++|++|++++|..++. ++..+..+++|++|++++|..+++......+..++
T Consensus 119 ~L~~L~L~~~~l~~~~~~~----l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~ 194 (336)
T 2ast_B 119 KLQNLSLEGLRLSDPIVNT----LAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVS 194 (336)
T ss_dssp CCSEEECTTCBCCHHHHHH----HTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSC
T ss_pred CCCEEeCcCcccCHHHHHH----HhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcc
Confidence 9999999998533233222 56689999999999966653 55556778999999999986666532223467788
Q ss_pred -CccEEEEeCcc-ccc--eecccccccccccccCCccceeeccCCcCcceecCCCccccCCCccEEeeccCCcccccc-C
Q 022501 165 -CLMKLRIDGCK-LMT--EIISSEGDVEEDEIVFSRLKWLSLECLDSLTSFCSGNCTFKFPSLEDLFVIDCPKMMIFS-F 239 (296)
Q Consensus 165 -~L~~L~l~~~~-~~~--~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~L~~L~l~~c~~l~~~~-~ 239 (296)
+|++|++++|. .+. .++.. ...+++|++|+++++..+++.... .+..+++|++|++++|..+..-. .
T Consensus 195 ~~L~~L~l~~~~~~~~~~~l~~~-------~~~~~~L~~L~l~~~~~l~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~ 266 (336)
T 2ast_B 195 ETITQLNLSGYRKNLQKSDLSTL-------VRRCPNLVHLDLSDSVMLKNDCFQ-EFFQLNYLQHLSLSRCYDIIPETLL 266 (336)
T ss_dssp TTCCEEECCSCGGGSCHHHHHHH-------HHHCTTCSEEECTTCTTCCGGGGG-GGGGCTTCCEEECTTCTTCCGGGGG
T ss_pred cCCCEEEeCCCcccCCHHHHHHH-------HhhCCCCCEEeCCCCCcCCHHHHH-HHhCCCCCCEeeCCCCCCCCHHHHH
Confidence 99999999985 332 22221 234899999999999866653332 24678999999999997443211 1
Q ss_pred CcccCCCcceEEcccC
Q 022501 240 GVLSTPRLREVRKNWG 255 (296)
Q Consensus 240 ~~~~~~~L~~l~l~~~ 255 (296)
.+..+++|+.|+++++
T Consensus 267 ~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 267 ELGEIPTLKTLQVFGI 282 (336)
T ss_dssp GGGGCTTCCEEECTTS
T ss_pred HHhcCCCCCEEeccCc
Confidence 3457899999999754
No 73
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.62 E-value=2e-15 Score=127.08 Aligned_cols=212 Identities=20% Similarity=0.154 Sum_probs=134.0
Q ss_pred cccceEEEeeccCccccccCCCCCCcCCCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCccccccCCc
Q 022501 6 IANLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGML 85 (296)
Q Consensus 6 l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 85 (296)
+..+..+.+..+.+.+.. ... .+++|+.|++.++.+..++ .+..+++|++|++++|.+..+. ....+
T Consensus 18 ~~~l~~l~l~~~~~~~~~--~~~--~l~~L~~L~l~~~~i~~~~--~l~~l~~L~~L~l~~n~l~~~~-------~l~~l 84 (272)
T 3rfs_A 18 FAETIKANLKKKSVTDAV--TQN--ELNSIDQIIANNSDIKSVQ--GIQYLPNVRYLALGGNKLHDIS-------ALKEL 84 (272)
T ss_dssp HHHHHHHHHTCSCTTSEE--CHH--HHTTCCEEECTTSCCCCCT--TGGGCTTCCEEECTTSCCCCCG-------GGTTC
T ss_pred HHHHHHHHhcCccccccc--ccc--cccceeeeeeCCCCccccc--ccccCCCCcEEECCCCCCCCch-------hhcCC
Confidence 344444555554444432 122 6788999999888877766 3678899999999988766542 23458
Q ss_pred cccceeEecccccccccccccCcccccCCCccEEEeccCcccccccc-CccccCCccEEEeccCcCccccCCcccccCCC
Q 022501 86 TQIKSLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCNNLINLVP-SSASFENLTTLEVSYCQRLKNLVSSSTAKSLV 164 (296)
Q Consensus 86 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~ 164 (296)
++|++|.++++. +..++... +..+++|++|+++++. +..++. .+..+++|++|++++| .++.++.. .+..++
T Consensus 85 ~~L~~L~L~~n~-l~~~~~~~---~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~-~~~~l~ 157 (272)
T 3rfs_A 85 TNLTYLILTGNQ-LQSLPNGV---FDKLTNLKELVLVENQ-LQSLPDGVFDKLTNLTYLNLAHN-QLQSLPKG-VFDKLT 157 (272)
T ss_dssp TTCCEEECTTSC-CCCCCTTT---TTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECCSS-CCCCCCTT-TTTTCT
T ss_pred CCCCEEECCCCc-cCccChhH---hcCCcCCCEEECCCCc-CCccCHHHhccCCCCCEEECCCC-ccCccCHH-HhccCc
Confidence 888888888764 33333221 4567888888888864 444444 3566788888888876 45554432 346778
Q ss_pred CccEEEEeCccccceecccccccccccccCCccceeeccCCcCcceecCCCccccCCCccEEeeccCCccccccCCcccC
Q 022501 165 CLMKLRIDGCKLMTEIISSEGDVEEDEIVFSRLKWLSLECLDSLTSFCSGNCTFKFPSLEDLFVIDCPKMMIFSFGVLST 244 (296)
Q Consensus 165 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~ 244 (296)
+|++|++++|. +..++.. .+..+++|+.|+++++. ++.++... +..+++|+.|++++++... .+
T Consensus 158 ~L~~L~l~~n~-l~~~~~~------~~~~l~~L~~L~L~~N~-l~~~~~~~-~~~l~~L~~L~l~~N~~~~-------~~ 221 (272)
T 3rfs_A 158 NLTELDLSYNQ-LQSLPEG------VFDKLTQLKDLRLYQNQ-LKSVPDGV-FDRLTSLQYIWLHDNPWDC-------TC 221 (272)
T ss_dssp TCCEEECCSSC-CCCCCTT------TTTTCTTCCEEECCSSC-CSCCCTTT-TTTCTTCCEEECCSSCBCC-------CT
T ss_pred cCCEEECCCCC-cCccCHH------HhcCCccCCEEECCCCc-CCccCHHH-HhCCcCCCEEEccCCCccc-------cC
Confidence 88888888874 3333221 12337788888887764 55554432 4567788888887765322 34
Q ss_pred CCcceEEcc
Q 022501 245 PRLREVRKN 253 (296)
Q Consensus 245 ~~L~~l~l~ 253 (296)
++|+.++++
T Consensus 222 ~~l~~l~~~ 230 (272)
T 3rfs_A 222 PGIRYLSEW 230 (272)
T ss_dssp TTTHHHHHH
T ss_pred cHHHHHHHH
Confidence 555655543
No 74
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.61 E-value=4.9e-16 Score=133.38 Aligned_cols=206 Identities=15% Similarity=0.069 Sum_probs=94.8
Q ss_pred ccEEEeccCCCC--ccChHHH------hcCCcccEEEEeccccceEeecCccccccCCccccceeEeccccccccccccc
Q 022501 35 LKSLEIVSDKSD--NFSIGFL------QRFHNVERLKLRNSSYKEIFSNGEVEKQAGMLTQIKSLKLWELSNLLHIWEQC 106 (296)
Q Consensus 35 L~~L~l~~~~~~--~~~~~~~------~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~ 106 (296)
|+.|++++|.+. .++.... .++++|++|++++|.+.+..+...+ ...+++|++|+++++. +..++..
T Consensus 65 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~---~~~l~~L~~L~Ls~N~-l~~~~~~- 139 (312)
T 1wwl_A 65 IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLL---EATGPDLNILNLRNVS-WATRDAW- 139 (312)
T ss_dssp HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSS---SCCSCCCSEEEEESCB-CSSSSSH-
T ss_pred HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHH---HhcCCCccEEEccCCC-CcchhHH-
Confidence 566666555443 2332211 1456666666666655433221110 1346666666666543 2222211
Q ss_pred CcccccC-----CCccEEEeccCccccccccCccccCCccEEEeccCcCcccc--CCcccccCCCCccEEEEeCccccce
Q 022501 107 YKLDSVF-----QNLETLEIWWCNNLINLVPSSASFENLTTLEVSYCQRLKNL--VSSSTAKSLVCLMKLRIDGCKLMTE 179 (296)
Q Consensus 107 ~~~~~~~-----~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~--~~~~~~~~l~~L~~L~l~~~~~~~~ 179 (296)
+..+ ++|++|+++++......+..+..+++|++|+++++...... +.......+++|++|++++|.. ..
T Consensus 140 ---~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l-~~ 215 (312)
T 1wwl_A 140 ---LAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGM-ET 215 (312)
T ss_dssp ---HHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCC-CC
T ss_pred ---HHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcC-cc
Confidence 2222 56666666665332222234555666666666655422211 1011124556666666666532 21
Q ss_pred ecccccccccccccCCccceeeccCCcCcceecCCCccccCCCccEEeeccCCccccccCCcccCCCcceEEcccCC
Q 022501 180 IISSEGDVEEDEIVFSRLKWLSLECLDSLTSFCSGNCTFKFPSLEDLFVIDCPKMMIFSFGVLSTPRLREVRKNWGL 256 (296)
Q Consensus 180 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~l~l~~~~ 256 (296)
+..... ..+..+++|++|+++++. ++..........+++|++|++++| .++.+|..+. ++|++|+++.+.
T Consensus 216 ~~~~~~---~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~l~~L~~L~Ls~N-~l~~ip~~~~--~~L~~L~Ls~N~ 285 (312)
T 1wwl_A 216 PSGVCS---ALAAARVQLQGLDLSHNS-LRDAAGAPSCDWPSQLNSLNLSFT-GLKQVPKGLP--AKLSVLDLSYNR 285 (312)
T ss_dssp HHHHHH---HHHHTTCCCSEEECTTSC-CCSSCCCSCCCCCTTCCEEECTTS-CCSSCCSSCC--SEEEEEECCSSC
T ss_pred hHHHHH---HHHhcCCCCCEEECCCCc-CCcccchhhhhhcCCCCEEECCCC-ccChhhhhcc--CCceEEECCCCC
Confidence 110000 001124566666666543 444332222334566666666665 3455555443 566666665443
No 75
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.61 E-value=4.8e-14 Score=131.46 Aligned_cols=56 Identities=20% Similarity=0.019 Sum_probs=43.4
Q ss_pred CCccceeeccCCcCcceecCCCccccCCCccEEeeccCCccccccCCcccCCCcceEEcccCC
Q 022501 194 FSRLKWLSLECLDSLTSFCSGNCTFKFPSLEDLFVIDCPKMMIFSFGVLSTPRLREVRKNWGL 256 (296)
Q Consensus 194 ~~~L~~L~l~~~~~L~~l~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~l~l~~~~ 256 (296)
+++|+.|+++++ +++.++. .+++|+.|++++| .++.+|..+..+++|+.|+++.+.
T Consensus 240 l~~L~~L~Ls~N-~L~~lp~-----~~~~L~~L~Ls~N-~L~~lp~~l~~l~~L~~L~L~~N~ 295 (622)
T 3g06_A 240 PSELKELMVSGN-RLTSLPM-----LPSGLLSLSVYRN-QLTRLPESLIHLSSETTVNLEGNP 295 (622)
T ss_dssp CTTCCEEECCSS-CCSCCCC-----CCTTCCEEECCSS-CCCSCCGGGGGSCTTCEEECCSCC
T ss_pred CCcCcEEECCCC-CCCcCCc-----ccccCcEEeCCCC-CCCcCCHHHhhccccCEEEecCCC
Confidence 677888888776 4666554 4588999999987 577888888888999999997544
No 76
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.56 E-value=1.2e-14 Score=124.67 Aligned_cols=232 Identities=16% Similarity=0.066 Sum_probs=139.5
Q ss_pred cceEEEeeccCccccccC-CCCCCcCCCccEEEeccCCCCccChHHH--hcCCcccEEEEeccccceEeecCccccccCC
Q 022501 8 NLEELKLSGKDITMICHD-HLPKHLFQNLKSLEIVSDKSDNFSIGFL--QRFHNVERLKLRNSSYKEIFSNGEVEKQAGM 84 (296)
Q Consensus 8 ~L~~L~L~~~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~--~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 84 (296)
.++.+.+.+..+...... ......+++|++|++++|.+....+..+ ..+++|++|++++|.+....+... ......
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~-~~~~~~ 143 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLA-ELQQWL 143 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHH-HHHTTB
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhH-HHHhhh
Confidence 356666666544321100 0010134678888888887664333333 678888888888886654222000 011235
Q ss_pred ccccceeEecccccccccccccCcccccCCCccEEEeccCccccc--cc--cCccccCCccEEEeccCcCccccCCc--c
Q 022501 85 LTQIKSLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCNNLIN--LV--PSSASFENLTTLEVSYCQRLKNLVSS--S 158 (296)
Q Consensus 85 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~--~~--~~~~~l~~L~~L~l~~c~~l~~~~~~--~ 158 (296)
+++|++|.++++.. ..++... +..+++|++|+++++...+. ++ .....+++|++|++++|. ++.++.. .
T Consensus 144 ~~~L~~L~Ls~n~l-~~~~~~~---~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~ 218 (310)
T 4glp_A 144 KPGLKVLSIAQAHS-PAFSCEQ---VRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTG-METPTGVCAA 218 (310)
T ss_dssp CSCCCEEEEECCSS-CCCCTTS---CCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSC-CCCHHHHHHH
T ss_pred ccCCCEEEeeCCCc-chhhHHH---hccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCC-CCchHHHHHH
Confidence 77888888887654 2322211 55678888888888754432 22 223567889999998764 4433211 1
Q ss_pred cccCCCCccEEEEeCccccceecccccccccccccCCccceeeccCCcCcceecCCCccccCCCccEEeeccCCcccccc
Q 022501 159 TAKSLVCLMKLRIDGCKLMTEIISSEGDVEEDEIVFSRLKWLSLECLDSLTSFCSGNCTFKFPSLEDLFVIDCPKMMIFS 238 (296)
Q Consensus 159 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~L~~L~l~~c~~l~~~~ 238 (296)
.+..+++|++|++++|......+..... ...+++|++|+++++. ++.++... +++|+.|++++| .++.+|
T Consensus 219 l~~~l~~L~~L~Ls~N~l~~~~p~~~~~----~~~~~~L~~L~Ls~N~-l~~lp~~~----~~~L~~L~Ls~N-~l~~~~ 288 (310)
T 4glp_A 219 LAAAGVQPHSLDLSHNSLRATVNPSAPR----CMWSSALNSLNLSFAG-LEQVPKGL----PAKLRVLDLSSN-RLNRAP 288 (310)
T ss_dssp HHHHTCCCSSEECTTSCCCCCCCSCCSS----CCCCTTCCCEECCSSC-CCSCCSCC----CSCCSCEECCSC-CCCSCC
T ss_pred HHhcCCCCCEEECCCCCCCccchhhHHh----ccCcCcCCEEECCCCC-CCchhhhh----cCCCCEEECCCC-cCCCCc
Confidence 2356788999999887643332322221 2224799999998864 66665433 378999999887 566766
Q ss_pred CCcccCCCcceEEcccCC
Q 022501 239 FGVLSTPRLREVRKNWGL 256 (296)
Q Consensus 239 ~~~~~~~~L~~l~l~~~~ 256 (296)
. ...+++|+.|+++.+.
T Consensus 289 ~-~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 289 Q-PDELPEVDNLTLDGNP 305 (310)
T ss_dssp C-TTSCCCCSCEECSSTT
T ss_pred h-hhhCCCccEEECcCCC
Confidence 5 3477899999987543
No 77
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.55 E-value=2.9e-14 Score=120.02 Aligned_cols=204 Identities=17% Similarity=0.139 Sum_probs=152.7
Q ss_pred ccceEEEeeccCccccccCCCCCCcCCCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCccccccCCcc
Q 022501 7 ANLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGMLT 86 (296)
Q Consensus 7 ~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 86 (296)
++|++|++++++++++.+..+. .+++|++|++++|.+..++...+.++++|++|++++|.+..+.+ .....++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-----~~~~~l~ 100 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFF--SFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLAL-----GAFSGLS 100 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTT--TCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECT-----TTTTTCT
T ss_pred CCccEEECCCCcccccCHhHhc--cccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccCh-----hhhcCCc
Confidence 4699999999999998766777 89999999999999998887788999999999999998877643 1234589
Q ss_pred ccceeEecccccccccccccCcccccCCCccEEEeccCcccc-ccccCccccCCccEEEeccCcCccccCCcccccCCCC
Q 022501 87 QIKSLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCNNLI-NLVPSSASFENLTTLEVSYCQRLKNLVSSSTAKSLVC 165 (296)
Q Consensus 87 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~-~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~ 165 (296)
+|++|.++++.. ..++... +..+++|++|+++++.... .++..+..+++|++|+++++. ++..+.. .+..+++
T Consensus 101 ~L~~L~l~~n~l-~~~~~~~---~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~-l~~~~~~-~~~~l~~ 174 (276)
T 2z62_A 101 SLQKLVAVETNL-ASLENFP---IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCT-DLRVLHQ 174 (276)
T ss_dssp TCCEEECTTSCC-CCSTTCC---CTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSC-CCEECGG-GGHHHHT
T ss_pred cccEEECCCCCc-cccCchh---cccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCC-CCcCCHH-Hhhhhhh
Confidence 999999998643 3332211 6678999999999874333 256677889999999999864 5544322 2344455
Q ss_pred cc----EEEEeCccccceecccccccccccccCCccceeeccCCcCcceecCCCccccCCCccEEeeccCCc
Q 022501 166 LM----KLRIDGCKLMTEIISSEGDVEEDEIVFSRLKWLSLECLDSLTSFCSGNCTFKFPSLEDLFVIDCPK 233 (296)
Q Consensus 166 L~----~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~L~~L~l~~c~~ 233 (296)
|+ +|+++++. +..+...... ..+|++|+++++. ++.++... +..+++|+.|++++++.
T Consensus 175 L~~l~l~L~ls~n~-l~~~~~~~~~-------~~~L~~L~L~~n~-l~~~~~~~-~~~l~~L~~L~l~~N~~ 236 (276)
T 2z62_A 175 MPLLNLSLDLSLNP-MNFIQPGAFK-------EIRLKELALDTNQ-LKSVPDGI-FDRLTSLQKIWLHTNPW 236 (276)
T ss_dssp CTTCCEEEECCSSC-CCEECTTSSC-------SCCEEEEECCSSC-CSCCCTTT-TTTCCSCCEEECCSSCB
T ss_pred ccccceeeecCCCc-ccccCccccC-------CCcccEEECCCCc-eeecCHhH-hcccccccEEEccCCcc
Confidence 55 88888875 4444432222 4589999999875 77776543 56789999999998753
No 78
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.54 E-value=2e-13 Score=127.58 Aligned_cols=64 Identities=13% Similarity=0.046 Sum_probs=47.2
Q ss_pred cccCCccceeeccCCcCcceecCCCccccCCCccEEeeccCCccccccC-CcccCCCcceEEcccCCc
Q 022501 191 EIVFSRLKWLSLECLDSLTSFCSGNCTFKFPSLEDLFVIDCPKMMIFSF-GVLSTPRLREVRKNWGLD 257 (296)
Q Consensus 191 ~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~L~~L~l~~c~~l~~~~~-~~~~~~~L~~l~l~~~~~ 257 (296)
+..+++|++|+++++ +++.+++.. +..+++|++|+++++ +++.++. .+..+++|+.|+++.+..
T Consensus 490 ~~~l~~L~~L~Ls~N-~L~~l~~~~-f~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L~Ls~N~l 554 (635)
T 4g8a_A 490 FTELRNLTFLDLSQC-QLEQLSPTA-FNSLSSLQVLNMSHN-NFFSLDTFPYKCLNSLQVLDYSLNHI 554 (635)
T ss_dssp CTTCTTCCEEECTTS-CCCEECTTT-TTTCTTCCEEECTTS-CCCBCCCGGGTTCTTCCEEECTTSCC
T ss_pred hhhccccCEEECCCC-ccCCcChHH-HcCCCCCCEEECCCC-cCCCCChhHHhCCCCCCEEECCCCcC
Confidence 445788888888887 477776544 567889999999887 4666654 355778999999976543
No 79
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.53 E-value=8.9e-14 Score=118.05 Aligned_cols=176 Identities=15% Similarity=0.075 Sum_probs=135.4
Q ss_pred cccceEEEeeccCccccccCCCCCCcCCCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCccccccCCc
Q 022501 6 IANLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGML 85 (296)
Q Consensus 6 l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 85 (296)
.+++++|++++|.+..+.+..+. .+++|+.|++++|.+..++.. +.+++|++|++++|.+..+. .....+
T Consensus 30 ~~~l~~L~L~~N~l~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~--~~l~~L~~L~Ls~N~l~~l~------~~~~~l 99 (290)
T 1p9a_G 30 PKDTTILHLSENLLYTFSLATLM--PYTRLTQLNLDRAELTKLQVD--GTLPVLGTLDLSHNQLQSLP------LLGQTL 99 (290)
T ss_dssp CTTCCEEECTTSCCSEEEGGGGT--TCTTCCEEECTTSCCCEEECC--SCCTTCCEEECCSSCCSSCC------CCTTTC
T ss_pred CCCCCEEEcCCCcCCccCHHHhh--cCCCCCEEECCCCccCcccCC--CCCCcCCEEECCCCcCCcCc------hhhccC
Confidence 57899999999999998777777 899999999999998877643 78999999999999877542 234568
Q ss_pred cccceeEecccccccccccccCcccccCCCccEEEeccCccccccccC-ccccCCccEEEeccCcCccccCCcccccCCC
Q 022501 86 TQIKSLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCNNLINLVPS-SASFENLTTLEVSYCQRLKNLVSSSTAKSLV 164 (296)
Q Consensus 86 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~ 164 (296)
++|++|.++++. +..++... +..+++|+.|+++++ .+..++.. +..+++|+.|+++++ .++.++.. .+..++
T Consensus 100 ~~L~~L~l~~N~-l~~l~~~~---~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~-~~~~l~ 172 (290)
T 1p9a_G 100 PALTVLDVSFNR-LTSLPLGA---LRGLGELQELYLKGN-ELKTLPPGLLTPTPKLEKLSLANN-NLTELPAG-LLNGLE 172 (290)
T ss_dssp TTCCEEECCSSC-CCCCCSST---TTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTS-CCSCCCTT-TTTTCT
T ss_pred CCCCEEECCCCc-CcccCHHH---HcCCCCCCEEECCCC-CCCccChhhcccccCCCEEECCCC-cCCccCHH-HhcCcC
Confidence 999999999864 44443322 667899999999986 45556554 467899999999975 56666543 457789
Q ss_pred CccEEEEeCccccceecccccccccccccCCccceeeccCCc
Q 022501 165 CLMKLRIDGCKLMTEIISSEGDVEEDEIVFSRLKWLSLECLD 206 (296)
Q Consensus 165 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 206 (296)
+|++|++++|. +..++..... .++|+.+++.+.+
T Consensus 173 ~L~~L~L~~N~-l~~ip~~~~~-------~~~L~~l~L~~Np 206 (290)
T 1p9a_G 173 NLDTLLLQENS-LYTIPKGFFG-------SHLLPFAFLHGNP 206 (290)
T ss_dssp TCCEEECCSSC-CCCCCTTTTT-------TCCCSEEECCSCC
T ss_pred CCCEEECCCCc-CCccChhhcc-------cccCCeEEeCCCC
Confidence 99999999875 4455543333 6788999988755
No 80
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.53 E-value=7.6e-13 Score=123.66 Aligned_cols=238 Identities=14% Similarity=0.020 Sum_probs=145.0
Q ss_pred cccceEEEeeccCccccccCCCCCCcCCCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecC---------
Q 022501 6 IANLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNG--------- 76 (296)
Q Consensus 6 l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~--------- 76 (296)
..+|+.|++.++.+..+. .. .++.|+.+++.++.....+. ...+++|+.|+++.+.+.......
T Consensus 327 ~~~L~~L~l~~~~~~~~~---~~--~l~~L~~l~l~~n~~~~~~~--~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L 399 (635)
T 4g8a_A 327 NFGWQHLELVNCKFGQFP---TL--KLKSLKRLTFTSNKGGNAFS--EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISL 399 (635)
T ss_dssp CCCCSEEEEESCEESSCC---CC--BCTTCCEEEEESCCSCCBCC--CCBCTTCCEEECCSSCCBEEEECCHHHHSCSCC
T ss_pred chhhhhhhcccccccCcC---cc--cchhhhhcccccccCCCCcc--cccccccccchhhccccccccccccchhhhhhh
Confidence 456777777776655442 11 34455555554444332221 123445555555444332221100
Q ss_pred -----------ccccccCCccccceeEecccccccccccccCcccccCCCccEEEeccCccccccccCccccCCccEEEe
Q 022501 77 -----------EVEKQAGMLTQIKSLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCNNLINLVPSSASFENLTTLEV 145 (296)
Q Consensus 77 -----------~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l 145 (296)
........+++|+.+.+.++......+.. .+..+++++.++++.+......+.....++.|+.|++
T Consensus 400 ~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~---~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~L 476 (635)
T 4g8a_A 400 KYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFS---VFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKM 476 (635)
T ss_dssp CEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSC---TTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEEC
T ss_pred hhhhccccccccccccccccccccchhhhhcccccccccc---ccccccccccccccccccccccccccccchhhhhhhh
Confidence 00112234677777777665544332222 1456778888888876544444555677889999999
Q ss_pred ccCcCccccCCcccccCCCCccEEEEeCccccceecccccccccccccCCccceeeccCCcCcceecCCCccccCCCccE
Q 022501 146 SYCQRLKNLVSSSTAKSLVCLMKLRIDGCKLMTEIISSEGDVEEDEIVFSRLKWLSLECLDSLTSFCSGNCTFKFPSLED 225 (296)
Q Consensus 146 ~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~L~~ 225 (296)
+++.......+. .+..+++|++|++++|. ++.++.. .+..+++|++|+++++ +++.++... +..+++|+.
T Consensus 477 s~N~~~~~~~~~-~~~~l~~L~~L~Ls~N~-L~~l~~~------~f~~l~~L~~L~Ls~N-~l~~l~~~~-~~~l~~L~~ 546 (635)
T 4g8a_A 477 AGNSFQENFLPD-IFTELRNLTFLDLSQCQ-LEQLSPT------AFNSLSSLQVLNMSHN-NFFSLDTFP-YKCLNSLQV 546 (635)
T ss_dssp TTCEEGGGEECS-CCTTCTTCCEEECTTSC-CCEECTT------TTTTCTTCCEEECTTS-CCCBCCCGG-GTTCTTCCE
T ss_pred hhcccccccCch-hhhhccccCEEECCCCc-cCCcChH------HHcCCCCCCEEECCCC-cCCCCChhH-HhCCCCCCE
Confidence 987655544332 46788999999999985 4444322 2334899999999986 477776644 567899999
Q ss_pred EeeccCCccccccCCcccC-CCcceEEcccCCcccccCCCc
Q 022501 226 LFVIDCPKMMIFSFGVLST-PRLREVRKNWGLDKGCWEGNL 265 (296)
Q Consensus 226 L~l~~c~~l~~~~~~~~~~-~~L~~l~l~~~~~~~~~~~~~ 265 (296)
|+++++......|..+..+ ++|+.|+++ +..|.|+.++
T Consensus 547 L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~--~Np~~C~C~~ 585 (635)
T 4g8a_A 547 LDYSLNHIMTSKKQELQHFPSSLAFLNLT--QNDFACTCEH 585 (635)
T ss_dssp EECTTSCCCBCCSSCTTCCCTTCCEEECT--TCCBCCSGGG
T ss_pred EECCCCcCCCCCHHHHHhhhCcCCEEEee--CCCCcccCCc
Confidence 9999975444445555566 689999998 4446555543
No 81
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.53 E-value=7.4e-14 Score=111.67 Aligned_cols=129 Identities=14% Similarity=0.179 Sum_probs=57.7
Q ss_pred cCCCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCccccccCCccccceeEecccccccccccccCccc
Q 022501 31 LFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGMLTQIKSLKLWELSNLLHIWEQCYKLD 110 (296)
Q Consensus 31 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~ 110 (296)
.+++|+.|++++|.+..++ .+..+++|++|++.+|.+..+.. ...+++|++|.++++..-...+.. +
T Consensus 42 ~l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~l~~n~~~~~~~-------l~~l~~L~~L~l~~n~l~~~~~~~----l 108 (197)
T 4ezg_A 42 QMNSLTYITLANINVTDLT--GIEYAHNIKDLTINNIHATNYNP-------ISGLSNLERLRIMGKDVTSDKIPN----L 108 (197)
T ss_dssp HHHTCCEEEEESSCCSCCT--TGGGCTTCSEEEEESCCCSCCGG-------GTTCTTCCEEEEECTTCBGGGSCC----C
T ss_pred hcCCccEEeccCCCccChH--HHhcCCCCCEEEccCCCCCcchh-------hhcCCCCCEEEeECCccCcccChh----h
Confidence 3445555555554444444 24445555555555543322211 122455555555543221111111 3
Q ss_pred ccCCCccEEEeccCccccccccCccccCCccEEEeccCcCccccCCcccccCCCCccEEEEeCcc
Q 022501 111 SVFQNLETLEIWWCNNLINLVPSSASFENLTTLEVSYCQRLKNLVSSSTAKSLVCLMKLRIDGCK 175 (296)
Q Consensus 111 ~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~ 175 (296)
..+++|+.|+++++......+..+..+++|++|++++|..+++++ .+..+++|++|++++|.
T Consensus 109 ~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~---~l~~l~~L~~L~l~~n~ 170 (197)
T 4ezg_A 109 SGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM---PLKTLPELKSLNIQFDG 170 (197)
T ss_dssp TTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG---GGGGCSSCCEEECTTBC
T ss_pred cCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH---hhcCCCCCCEEECCCCC
Confidence 445555555555543322233334445555555555554344432 23455555555555543
No 82
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.52 E-value=7.3e-14 Score=118.65 Aligned_cols=58 Identities=16% Similarity=0.281 Sum_probs=26.6
Q ss_pred cccceEEEeeccCccccccCCCCCCcCCCccEEEeccCCCCccChHHHhcCCcccEEEEecccc
Q 022501 6 IANLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSY 69 (296)
Q Consensus 6 l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 69 (296)
+++|++|+++++.++.+. .+. .+++|+.|++++|.+..++. +..+++|++|++++|.+
T Consensus 45 l~~L~~L~l~~~~i~~~~--~~~--~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l 102 (291)
T 1h6t_A 45 LNSIDQIIANNSDIKSVQ--GIQ--YLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKV 102 (291)
T ss_dssp HHTCCEEECTTSCCCCCT--TGG--GCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred cCcccEEEccCCCcccCh--hHh--cCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcC
Confidence 344455555544444431 122 44555555555544444432 44445555555554443
No 83
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.51 E-value=1.3e-13 Score=114.53 Aligned_cols=176 Identities=15% Similarity=0.140 Sum_probs=126.0
Q ss_pred ccceEEEeeccCccccccCCCCCCcCCCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCccccccCCcc
Q 022501 7 ANLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGMLT 86 (296)
Q Consensus 7 ~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 86 (296)
++.+++++++++++.++ .. ..++++.|++++|.+..++...+.++++|++|++++|.+..+.+ .....++
T Consensus 14 ~~~~~l~~~~~~l~~~p-~~----~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-----~~~~~l~ 83 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVP-SG----IPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSA-----GVFDDLT 83 (251)
T ss_dssp GGGTEEECTTCCCSSCC-SC----CCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCT-----TTTTTCT
T ss_pred CCCeEEecCCCCccccC-CC----CCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCH-----hHhccCC
Confidence 45678888888888764 22 23689999999998888877778889999999999987766533 1224588
Q ss_pred ccceeEecccccccccccccCcccccCCCccEEEeccCccccccccC-ccccCCccEEEeccCcCccccCCcccccCCCC
Q 022501 87 QIKSLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCNNLINLVPS-SASFENLTTLEVSYCQRLKNLVSSSTAKSLVC 165 (296)
Q Consensus 87 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~ 165 (296)
+|+.|.++++. +..++... +..+++|+.|+++++ .+..++.. +..+++|+.|+++++ .+..++.. .+..+++
T Consensus 84 ~L~~L~L~~n~-l~~~~~~~---~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~-~~~~l~~ 156 (251)
T 3m19_A 84 ELGTLGLANNQ-LASLPLGV---FDHLTQLDKLYLGGN-QLKSLPSGVFDRLTKLKELRLNTN-QLQSIPAG-AFDKLTN 156 (251)
T ss_dssp TCCEEECTTSC-CCCCCTTT---TTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTT-TTTTCTT
T ss_pred cCCEEECCCCc-ccccChhH---hcccCCCCEEEcCCC-cCCCcChhHhccCCcccEEECcCC-cCCccCHH-HcCcCcC
Confidence 99999998764 33443221 566889999999886 55566654 467889999999875 56665542 4677889
Q ss_pred ccEEEEeCccccceecccccccccccccCCccceeeccCCc
Q 022501 166 LMKLRIDGCKLMTEIISSEGDVEEDEIVFSRLKWLSLECLD 206 (296)
Q Consensus 166 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 206 (296)
|++|++++|.. ..++.. .+..+++|+.|++++.+
T Consensus 157 L~~L~L~~N~l-~~~~~~------~~~~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 157 LQTLSLSTNQL-QSVPHG------AFDRLGKLQTITLFGNQ 190 (251)
T ss_dssp CCEEECCSSCC-SCCCTT------TTTTCTTCCEEECCSCC
T ss_pred CCEEECCCCcC-CccCHH------HHhCCCCCCEEEeeCCc
Confidence 99999998753 333321 23348899999998865
No 84
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.51 E-value=6.9e-13 Score=119.55 Aligned_cols=117 Identities=16% Similarity=0.071 Sum_probs=72.1
Q ss_pred ccccceEEEeeccCccccccCCCCCCcCCCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCccccccCC
Q 022501 5 VIANLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGM 84 (296)
Q Consensus 5 ~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 84 (296)
.+++|++|++++|++++++ . ..++|++|++++|.+..+| .++++++|++|++.+|.+.++.. .
T Consensus 151 ~l~~L~~L~l~~N~l~~lp-~-----~~~~L~~L~L~~n~l~~l~--~~~~l~~L~~L~l~~N~l~~l~~---------~ 213 (454)
T 1jl5_A 151 NSSFLKIIDVDNNSLKKLP-D-----LPPSLEFIAAGNNQLEELP--ELQNLPFLTAIYADNNSLKKLPD---------L 213 (454)
T ss_dssp TCTTCCEEECCSSCCSCCC-C-----CCTTCCEEECCSSCCSSCC--CCTTCTTCCEEECCSSCCSSCCC---------C
T ss_pred CCCCCCEEECCCCcCcccC-C-----CcccccEEECcCCcCCcCc--cccCCCCCCEEECCCCcCCcCCC---------C
Confidence 3678888888888877653 1 2458888888888877776 36778888888888886655321 1
Q ss_pred ccccceeEecccccccccccccCcccccCCCccEEEeccCccccccccCccccCCccEEEeccC
Q 022501 85 LTQIKSLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCNNLINLVPSSASFENLTTLEVSYC 148 (296)
Q Consensus 85 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c 148 (296)
.++|+.|.++++. +..++. +..+++|+.|+++++ .+..++.. +++|+.|+++++
T Consensus 214 ~~~L~~L~l~~n~-l~~lp~-----~~~l~~L~~L~l~~N-~l~~l~~~---~~~L~~L~l~~N 267 (454)
T 1jl5_A 214 PLSLESIVAGNNI-LEELPE-----LQNLPFLTTIYADNN-LLKTLPDL---PPSLEALNVRDN 267 (454)
T ss_dssp CTTCCEEECCSSC-CSSCCC-----CTTCTTCCEEECCSS-CCSSCCSC---CTTCCEEECCSS
T ss_pred cCcccEEECcCCc-CCcccc-----cCCCCCCCEEECCCC-cCCccccc---ccccCEEECCCC
Confidence 2466666666653 333331 445566666666654 23333321 345555555543
No 85
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.50 E-value=7.3e-13 Score=123.52 Aligned_cols=203 Identities=15% Similarity=0.129 Sum_probs=94.9
Q ss_pred ccceEEEeeccCccccccCCCCCCcCCCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCccccccCCcc
Q 022501 7 ANLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGMLT 86 (296)
Q Consensus 7 ~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 86 (296)
++|++|++++|+++.++. .+++|++|++++|.+..+|. .+++|++|++++|.+..+.. .++
T Consensus 61 ~~L~~L~L~~N~l~~lp~------~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N~l~~l~~---------~l~ 121 (622)
T 3g06_A 61 AHITTLVIPDNNLTSLPA------LPPELRTLEVSGNQLTSLPV----LPPGLLELSIFSNPLTHLPA---------LPS 121 (622)
T ss_dssp TTCSEEEECSCCCSCCCC------CCTTCCEEEECSCCCSCCCC----CCTTCCEEEECSCCCCCCCC---------CCT
T ss_pred CCCcEEEecCCCCCCCCC------cCCCCCEEEcCCCcCCcCCC----CCCCCCEEECcCCcCCCCCC---------CCC
Confidence 344444444444443321 23445555555544444442 34455555555444433211 244
Q ss_pred ccceeEecccccccccccccCcccccCCCccEEEeccCccccccccCccccCCccEEEeccCcCccccCCcccccCCCCc
Q 022501 87 QIKSLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCNNLINLVPSSASFENLTTLEVSYCQRLKNLVSSSTAKSLVCL 166 (296)
Q Consensus 87 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L 166 (296)
+|+.|.++++. +..++. .+++|+.|++++| .+..++.. +++|+.|+++++ .++.++ ..+++|
T Consensus 122 ~L~~L~L~~N~-l~~lp~-------~l~~L~~L~Ls~N-~l~~l~~~---~~~L~~L~L~~N-~l~~l~-----~~~~~L 183 (622)
T 3g06_A 122 GLCKLWIFGNQ-LTSLPV-------LPPGLQELSVSDN-QLASLPAL---PSELCKLWAYNN-QLTSLP-----MLPSGL 183 (622)
T ss_dssp TCCEEECCSSC-CSCCCC-------CCTTCCEEECCSS-CCSCCCCC---CTTCCEEECCSS-CCSCCC-----CCCTTC
T ss_pred CcCEEECCCCC-CCcCCC-------CCCCCCEEECcCC-cCCCcCCc---cCCCCEEECCCC-CCCCCc-----ccCCCC
Confidence 55555555432 222221 1356666666664 33333321 334445544442 222221 233556
Q ss_pred cEEEEeCccccceecccccc----------cccccccCCccceeeccCCcCcceecCCCccccCCCccEEeeccCCcccc
Q 022501 167 MKLRIDGCKLMTEIISSEGD----------VEEDEIVFSRLKWLSLECLDSLTSFCSGNCTFKFPSLEDLFVIDCPKMMI 236 (296)
Q Consensus 167 ~~L~l~~~~~~~~~~~~~~~----------~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~L~~L~l~~c~~l~~ 236 (296)
+.|++++|. +..++..... .......+++|+.|+++++ +++.++ ..+++|+.|++++| .++.
T Consensus 184 ~~L~Ls~N~-l~~l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N-~L~~lp-----~~l~~L~~L~Ls~N-~L~~ 255 (622)
T 3g06_A 184 QELSVSDNQ-LASLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGN-RLTSLP-----VLPSELKELMVSGN-RLTS 255 (622)
T ss_dssp CEEECCSSC-CSCCCCCCTTCCEEECCSSCCSSCCCCCTTCCEEECCSS-CCSCCC-----CCCTTCCEEECCSS-CCSC
T ss_pred cEEECCCCC-CCCCCCccchhhEEECcCCcccccCCCCCCCCEEEccCC-ccCcCC-----CCCCcCcEEECCCC-CCCc
Confidence 666665543 2222110000 0000012456666776665 355544 23477778888776 5666
Q ss_pred ccCCcccCCCcceEEcccCCc
Q 022501 237 FSFGVLSTPRLREVRKNWGLD 257 (296)
Q Consensus 237 ~~~~~~~~~~L~~l~l~~~~~ 257 (296)
+|. .+++|+.|+++.+..
T Consensus 256 lp~---~~~~L~~L~Ls~N~L 273 (622)
T 3g06_A 256 LPM---LPSGLLSLSVYRNQL 273 (622)
T ss_dssp CCC---CCTTCCEEECCSSCC
T ss_pred CCc---ccccCcEEeCCCCCC
Confidence 666 557778887765543
No 86
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.49 E-value=4.8e-14 Score=120.80 Aligned_cols=215 Identities=13% Similarity=0.060 Sum_probs=137.6
Q ss_pred CCccEEEeccCCCCccC-hH--HHhcCCcccEEEEeccccceEeecCccccccCCccccceeEecccccccccccccCcc
Q 022501 33 QNLKSLEIVSDKSDNFS-IG--FLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGMLTQIKSLKLWELSNLLHIWEQCYKL 109 (296)
Q Consensus 33 ~~L~~L~l~~~~~~~~~-~~--~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~ 109 (296)
..++.+.+.++....-. .. .+..+++|++|++++|.+.+..+...+. ..+++|++|.++++..-...+......
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~---~~~~~L~~L~Ls~n~i~~~~~~~~~~~ 140 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLE---ATGLALSSLRLRNVSWATGRSWLAELQ 140 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSS---CCCBCCSSCEEESCCCSSTTSSHHHHH
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhh---ccCCCCCEEEeecccccchhhhhHHHH
Confidence 45788888877654211 11 1224578999999999776654422111 558999999999876433221100011
Q ss_pred cccCCCccEEEeccCccccccccCccccCCccEEEeccCcCccc--cCCcccccCCCCccEEEEeCccccceeccccccc
Q 022501 110 DSVFQNLETLEIWWCNNLINLVPSSASFENLTTLEVSYCQRLKN--LVSSSTAKSLVCLMKLRIDGCKLMTEIISSEGDV 187 (296)
Q Consensus 110 ~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~--~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~ 187 (296)
...+++|++|+++++......+..+..+++|++|+++++..... +........+++|++|++++|.. +.+......
T Consensus 141 ~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l-~~l~~~~~~- 218 (310)
T 4glp_A 141 QWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGM-ETPTGVCAA- 218 (310)
T ss_dssp TTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCC-CCHHHHHHH-
T ss_pred hhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCC-CchHHHHHH-
Confidence 34688999999998765444445677889999999998764332 22222346789999999999854 322221000
Q ss_pred ccccccCCccceeeccCCcCccee-cCCC-ccccCCCccEEeeccCCccccccCCcccCCCcceEEcccCCcc
Q 022501 188 EEDEIVFSRLKWLSLECLDSLTSF-CSGN-CTFKFPSLEDLFVIDCPKMMIFSFGVLSTPRLREVRKNWGLDK 258 (296)
Q Consensus 188 ~~~~~~~~~L~~L~l~~~~~L~~l-~~~~-~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~l~l~~~~~~ 258 (296)
.+..+++|++|+++++. ++.. +... ....+++|++|++++| .++.+|... .++|+.|+++.+...
T Consensus 219 --l~~~l~~L~~L~Ls~N~-l~~~~p~~~~~~~~~~~L~~L~Ls~N-~l~~lp~~~--~~~L~~L~Ls~N~l~ 285 (310)
T 4glp_A 219 --LAAAGVQPHSLDLSHNS-LRATVNPSAPRCMWSSALNSLNLSFA-GLEQVPKGL--PAKLRVLDLSSNRLN 285 (310)
T ss_dssp --HHHHTCCCSSEECTTSC-CCCCCCSCCSSCCCCTTCCCEECCSS-CCCSCCSCC--CSCCSCEECCSCCCC
T ss_pred --HHhcCCCCCEEECCCCC-CCccchhhHHhccCcCcCCEEECCCC-CCCchhhhh--cCCCCEEECCCCcCC
Confidence 01237899999999875 5655 3211 1112379999999987 577888865 379999999866543
No 87
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.49 E-value=2e-12 Score=116.57 Aligned_cols=194 Identities=17% Similarity=0.091 Sum_probs=96.4
Q ss_pred CCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeec--------------CccccccCCccccceeEeccccc
Q 022501 33 QNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSN--------------GEVEKQAGMLTQIKSLKLWELSN 98 (296)
Q Consensus 33 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~--------------~~~~~~~~~~~~L~~L~l~~~~~ 98 (296)
++|++|++++|.+..+| .++++++|++|++++|.+.++... .+++ ....+++|+.|.++++.
T Consensus 131 ~~L~~L~L~~n~l~~lp--~~~~l~~L~~L~l~~N~l~~lp~~~~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~- 206 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEKLP--ELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNS- 206 (454)
T ss_dssp TTCCEEECCSSCCSSCC--CCTTCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSC-
T ss_pred CCCCEEECcCCCCCCCc--ccCCCCCCCEEECCCCcCcccCCCcccccEEECcCCcCCcCc-cccCCCCCCEEECCCCc-
Confidence 46666666666665555 255666666666666655442110 0011 12335555555555542
Q ss_pred ccccccccCcccccCCCccEEEeccCccccccccCccccCCccEEEeccCcCccccCCcccccCCCCccEEEEeCccccc
Q 022501 99 LLHIWEQCYKLDSVFQNLETLEIWWCNNLINLVPSSASFENLTTLEVSYCQRLKNLVSSSTAKSLVCLMKLRIDGCKLMT 178 (296)
Q Consensus 99 l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~ 178 (296)
+..++. ..++|+.|+++++ .+..++ .+..+++|++|+++++. +..++. .+++|++|++++|.. .
T Consensus 207 l~~l~~-------~~~~L~~L~l~~n-~l~~lp-~~~~l~~L~~L~l~~N~-l~~l~~-----~~~~L~~L~l~~N~l-~ 270 (454)
T 1jl5_A 207 LKKLPD-------LPLSLESIVAGNN-ILEELP-ELQNLPFLTTIYADNNL-LKTLPD-----LPPSLEALNVRDNYL-T 270 (454)
T ss_dssp CSSCCC-------CCTTCCEEECCSS-CCSSCC-CCTTCTTCCEEECCSSC-CSSCCS-----CCTTCCEEECCSSCC-S
T ss_pred CCcCCC-------CcCcccEEECcCC-cCCccc-ccCCCCCCCEEECCCCc-CCcccc-----cccccCEEECCCCcc-c
Confidence 222211 1246777777765 344555 35667788888887753 433321 224555555555431 1
Q ss_pred eeccccc----------ccccccccCC--------------------ccceeeccCCcCcceecCCCccccCCCccEEee
Q 022501 179 EIISSEG----------DVEEDEIVFS--------------------RLKWLSLECLDSLTSFCSGNCTFKFPSLEDLFV 228 (296)
Q Consensus 179 ~~~~~~~----------~~~~~~~~~~--------------------~L~~L~l~~~~~L~~l~~~~~~~~~~~L~~L~l 228 (296)
.++.... .........+ +|++|+++++. ++.++. .+++|++|++
T Consensus 271 ~l~~~~~~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~-l~~lp~-----~~~~L~~L~L 344 (454)
T 1jl5_A 271 DLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNK-LIELPA-----LPPRLERLIA 344 (454)
T ss_dssp CCCCCCTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSC-CSCCCC-----CCTTCCEEEC
T ss_pred ccCcccCcCCEEECcCCccCcccCcCCcCCEEECcCCcCCcccCCcCcCCEEECCCCc-cccccc-----cCCcCCEEEC
Confidence 1111000 0000000112 34444443321 222221 2477888888
Q ss_pred ccCCccccccCCcccCCCcceEEcccCC
Q 022501 229 IDCPKMMIFSFGVLSTPRLREVRKNWGL 256 (296)
Q Consensus 229 ~~c~~l~~~~~~~~~~~~L~~l~l~~~~ 256 (296)
++| .++.+|. .+++|+.++++.+.
T Consensus 345 ~~N-~l~~lp~---~l~~L~~L~L~~N~ 368 (454)
T 1jl5_A 345 SFN-HLAEVPE---LPQNLKQLHVEYNP 368 (454)
T ss_dssp CSS-CCSCCCC---CCTTCCEEECCSSC
T ss_pred CCC-ccccccc---hhhhccEEECCCCC
Confidence 776 4666776 46788888887654
No 88
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.49 E-value=4.1e-13 Score=111.45 Aligned_cols=176 Identities=20% Similarity=0.168 Sum_probs=92.1
Q ss_pred CCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCccccccCCccccceeEecccccccccccccCccccc
Q 022501 33 QNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGMLTQIKSLKLWELSNLLHIWEQCYKLDSV 112 (296)
Q Consensus 33 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~ 112 (296)
.+.+.+++.++....+|..+ .+++++|++++|.+..+.+ .....+++|++|.++++. +..++... +..
T Consensus 14 ~~~~~l~~~~~~l~~~p~~~---~~~l~~L~L~~n~l~~~~~-----~~~~~l~~L~~L~L~~n~-l~~~~~~~---~~~ 81 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVPSGI---PADTEKLDLQSTGLATLSD-----ATFRGLTKLTWLNLDYNQ-LQTLSAGV---FDD 81 (251)
T ss_dssp GGGTEEECTTCCCSSCCSCC---CTTCCEEECTTSCCCCCCT-----TTTTTCTTCCEEECTTSC-CCCCCTTT---TTT
T ss_pred CCCeEEecCCCCccccCCCC---CCCCCEEEccCCCcCccCH-----hHhcCcccCCEEECCCCc-CCccCHhH---hcc
Confidence 34566666666666665421 2466666666665554422 112346666666666543 22222211 345
Q ss_pred CCCccEEEeccCcccccccc-CccccCCccEEEeccCcCccccCCcccccCCCCccEEEEeCccccceeccccccccccc
Q 022501 113 FQNLETLEIWWCNNLINLVP-SSASFENLTTLEVSYCQRLKNLVSSSTAKSLVCLMKLRIDGCKLMTEIISSEGDVEEDE 191 (296)
Q Consensus 113 ~~~L~~L~l~~~~~l~~~~~-~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 191 (296)
+++|+.|+++++. +..++. .+..+++|++|+++++ .++.++.. .+..+++|++|++++|. +..++.. .+
T Consensus 82 l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~-~~~~l~~L~~L~Ls~N~-l~~~~~~------~~ 151 (251)
T 3m19_A 82 LTELGTLGLANNQ-LASLPLGVFDHLTQLDKLYLGGN-QLKSLPSG-VFDRLTKLKELRLNTNQ-LQSIPAG------AF 151 (251)
T ss_dssp CTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECCSS-CCCCCCTT-TTTTCTTCCEEECCSSC-CCCCCTT------TT
T ss_pred CCcCCEEECCCCc-ccccChhHhcccCCCCEEEcCCC-cCCCcChh-HhccCCcccEEECcCCc-CCccCHH------Hc
Confidence 6666777766643 333333 3455666677766654 34444322 24556667777766653 3333221 12
Q ss_pred ccCCccceeeccCCcCcceecCCCccccCCCccEEeeccCC
Q 022501 192 IVFSRLKWLSLECLDSLTSFCSGNCTFKFPSLEDLFVIDCP 232 (296)
Q Consensus 192 ~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~L~~L~l~~c~ 232 (296)
..+++|+.|+++++. ++.++... +..+++|+.|++.+++
T Consensus 152 ~~l~~L~~L~L~~N~-l~~~~~~~-~~~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 152 DKLTNLQTLSLSTNQ-LQSVPHGA-FDRLGKLQTITLFGNQ 190 (251)
T ss_dssp TTCTTCCEEECCSSC-CSCCCTTT-TTTCTTCCEEECCSCC
T ss_pred CcCcCCCEEECCCCc-CCccCHHH-HhCCCCCCEEEeeCCc
Confidence 236666777766643 45544322 3456666677666654
No 89
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.48 E-value=4.5e-15 Score=131.09 Aligned_cols=238 Identities=11% Similarity=0.025 Sum_probs=152.5
Q ss_pred cccceEEEeeccCccccccC----CCCCCcCCCccEEEeccCCCCc----cChHH------HhcCCcccEEEEeccccce
Q 022501 6 IANLEELKLSGKDITMICHD----HLPKHLFQNLKSLEIVSDKSDN----FSIGF------LQRFHNVERLKLRNSSYKE 71 (296)
Q Consensus 6 l~~L~~L~L~~~~~~~~~~~----~~~~~~l~~L~~L~l~~~~~~~----~~~~~------~~~l~~L~~L~l~~~~~~~ 71 (296)
+++|++|+++++.+....+. .+. .+++|++|++++|.+.. +|..+ +..+++|++|++++|.+..
T Consensus 31 ~~~L~~L~L~~n~i~~~~~~~l~~~l~--~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~ 108 (386)
T 2ca6_A 31 DDSVKEIVLSGNTIGTEAARWLSENIA--SKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGP 108 (386)
T ss_dssp CSCCCEEECTTSEECHHHHHHHHHTTT--TCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCT
T ss_pred CCCccEEECCCCCCCHHHHHHHHHHHH--hCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCH
Confidence 68899999999888765332 244 78999999998876553 33332 3688999999999986543
Q ss_pred EeecCccccccCCccccceeEecccccccccccccCcccccC---------CCccEEEeccCccc-cccc---cCccccC
Q 022501 72 IFSNGEVEKQAGMLTQIKSLKLWELSNLLHIWEQCYKLDSVF---------QNLETLEIWWCNNL-INLV---PSSASFE 138 (296)
Q Consensus 72 ~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~---------~~L~~L~l~~~~~l-~~~~---~~~~~l~ 138 (296)
.. ...+......+++|++|.++++..-...+......+..+ ++|++|++++|..- ..++ ..+..++
T Consensus 109 ~~-~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~ 187 (386)
T 2ca6_A 109 TA-QEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHR 187 (386)
T ss_dssp TT-HHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCT
T ss_pred HH-HHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCC
Confidence 10 001222334588999999998754211000000002223 78999999987543 2333 2445678
Q ss_pred CccEEEeccCcCccccC---Ccc-cccCCCCccEEEEeCcccc----ceecccccccccccccCCccceeeccCCcCcce
Q 022501 139 NLTTLEVSYCQRLKNLV---SSS-TAKSLVCLMKLRIDGCKLM----TEIISSEGDVEEDEIVFSRLKWLSLECLDSLTS 210 (296)
Q Consensus 139 ~L~~L~l~~c~~l~~~~---~~~-~~~~l~~L~~L~l~~~~~~----~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~ 210 (296)
+|++|++++|. +++.. ... .+..+++|++|++++|..- ..++.. +..+++|++|+++++. ++.
T Consensus 188 ~L~~L~L~~n~-l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~-------l~~~~~L~~L~L~~n~-i~~ 258 (386)
T 2ca6_A 188 LLHTVKMVQNG-IRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIA-------LKSWPNLRELGLNDCL-LSA 258 (386)
T ss_dssp TCCEEECCSSC-CCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHH-------GGGCTTCCEEECTTCC-CCH
T ss_pred CcCEEECcCCC-CCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHH-------HccCCCcCEEECCCCC-Cch
Confidence 99999999874 44210 001 4567899999999998642 223322 2348899999999875 443
Q ss_pred ecCC---Ccc--ccCCCccEEeeccCCcccc-----ccCCc-ccCCCcceEEcccCC
Q 022501 211 FCSG---NCT--FKFPSLEDLFVIDCPKMMI-----FSFGV-LSTPRLREVRKNWGL 256 (296)
Q Consensus 211 l~~~---~~~--~~~~~L~~L~l~~c~~l~~-----~~~~~-~~~~~L~~l~l~~~~ 256 (296)
.... ..+ ..+++|++|++++|. ++. +|..+ ..+++|+.|+++.+.
T Consensus 259 ~~~~~l~~~l~~~~~~~L~~L~L~~n~-i~~~g~~~l~~~l~~~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 259 RGAAAVVDAFSKLENIGLQTLRLQYNE-IELDAVRTLKTVIDEKMPDLLFLELNGNR 314 (386)
T ss_dssp HHHHHHHHHHHTCSSCCCCEEECCSSC-CBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred hhHHHHHHHHhhccCCCeEEEECcCCc-CCHHHHHHHHHHHHhcCCCceEEEccCCc
Confidence 3110 011 237899999999985 444 77665 457999999997544
No 90
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.47 E-value=3.5e-13 Score=107.69 Aligned_cols=152 Identities=17% Similarity=0.235 Sum_probs=102.9
Q ss_pred hcCCcccEEEEeccccceEeecCccccccCCccccceeEecccccccccccccCcccccCCCccEEEeccCccccccccC
Q 022501 54 QRFHNVERLKLRNSSYKEIFSNGEVEKQAGMLTQIKSLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCNNLINLVPS 133 (296)
Q Consensus 54 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~ 133 (296)
+.+++|++|++++|.+..+. + ...+++|++|.++++ .+..++ . +..+++|++|+++++......+..
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~---~----l~~l~~L~~L~l~~n-~~~~~~-~----l~~l~~L~~L~l~~n~l~~~~~~~ 107 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLT---G----IEYAHNIKDLTINNI-HATNYN-P----ISGLSNLERLRIMGKDVTSDKIPN 107 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCT---T----GGGCTTCSEEEEESC-CCSCCG-G----GTTCTTCCEEEEECTTCBGGGSCC
T ss_pred hhcCCccEEeccCCCccChH---H----HhcCCCCCEEEccCC-CCCcch-h----hhcCCCCCEEEeECCccCcccChh
Confidence 56788888888888766442 2 234788888888877 444432 1 566788888888886544445666
Q ss_pred ccccCCccEEEeccCcCccccCCcccccCCCCccEEEEeCccccceecccccccccccccCCccceeeccCCcCcceecC
Q 022501 134 SASFENLTTLEVSYCQRLKNLVSSSTAKSLVCLMKLRIDGCKLMTEIISSEGDVEEDEIVFSRLKWLSLECLDSLTSFCS 213 (296)
Q Consensus 134 ~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~ 213 (296)
+..+++|++|++++|. +.+..+ ..+..+++|++|++++|..++.++. +..+++|+.|+++++. +++++
T Consensus 108 l~~l~~L~~L~Ls~n~-i~~~~~-~~l~~l~~L~~L~L~~n~~i~~~~~--------l~~l~~L~~L~l~~n~-i~~~~- 175 (197)
T 4ezg_A 108 LSGLTSLTLLDISHSA-HDDSIL-TKINTLPKVNSIDLSYNGAITDIMP--------LKTLPELKSLNIQFDG-VHDYR- 175 (197)
T ss_dssp CTTCTTCCEEECCSSB-CBGGGH-HHHTTCSSCCEEECCSCTBCCCCGG--------GGGCSSCCEEECTTBC-CCCCT-
T ss_pred hcCCCCCCEEEecCCc-cCcHhH-HHHhhCCCCCEEEccCCCCccccHh--------hcCCCCCCEEECCCCC-CcChH-
Confidence 7778888888888764 433211 2456788888888888875555542 2337888888888764 55554
Q ss_pred CCccccCCCccEEeeccCC
Q 022501 214 GNCTFKFPSLEDLFVIDCP 232 (296)
Q Consensus 214 ~~~~~~~~~L~~L~l~~c~ 232 (296)
....+++|++|++++++
T Consensus 176 --~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 176 --GIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp --TGGGCSSCCEEEECBC-
T ss_pred --HhccCCCCCEEEeeCcc
Confidence 24577888888888754
No 91
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.45 E-value=3.2e-14 Score=132.31 Aligned_cols=65 Identities=9% Similarity=0.037 Sum_probs=42.9
Q ss_pred ccccceEEEeeccCccccccC----CCCCCcCCCccEEEeccCCCCccC----hHHHhcCCcccEEEEeccccce
Q 022501 5 VIANLEELKLSGKDITMICHD----HLPKHLFQNLKSLEIVSDKSDNFS----IGFLQRFHNVERLKLRNSSYKE 71 (296)
Q Consensus 5 ~l~~L~~L~L~~~~~~~~~~~----~~~~~~l~~L~~L~l~~~~~~~~~----~~~~~~l~~L~~L~l~~~~~~~ 71 (296)
.+++|++|+|+++.+.+.+.. ... .+++|++|+++++....+. ...+.++++|++|++.+|.+.+
T Consensus 162 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~--~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~ 234 (592)
T 3ogk_B 162 HCRKIKTLLMEESSFSEKDGKWLHELAQ--HNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE 234 (592)
T ss_dssp HCTTCSEEECTTCEEECCCSHHHHHHHH--HCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG
T ss_pred hCCCCCEEECccccccCcchhHHHHHHh--cCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH
Confidence 468899999988776543211 122 5788888888777665222 2345677888888888875544
No 92
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.43 E-value=3.8e-13 Score=108.38 Aligned_cols=166 Identities=13% Similarity=0.114 Sum_probs=108.0
Q ss_pred eEEEeeccCccccccCCCCCCcCCCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCccccccCCccccc
Q 022501 10 EELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGMLTQIK 89 (296)
Q Consensus 10 ~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~ 89 (296)
+.++.+++.+..++ .. ..++|++|++++|.+..++...+..+++|++|++.+|.+..+.+ .....+++|+
T Consensus 10 ~~v~c~~~~l~~~p---~~--~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-----~~~~~l~~L~ 79 (208)
T 2o6s_A 10 TTVECYSQGRTSVP---TG--IPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPN-----GVFNKLTSLT 79 (208)
T ss_dssp TEEECCSSCCSSCC---SC--CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCT-----TTTTTCTTCC
T ss_pred CEEEecCCCccCCC---CC--CCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccCh-----hhcCCCCCcC
Confidence 34555555555543 12 45678888888887777777677778888888888886664422 1124477888
Q ss_pred eeEecccccccccccccCcccccCCCccEEEeccCccccccccC-ccccCCccEEEeccCcCccccCCcccccCCCCccE
Q 022501 90 SLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCNNLINLVPS-SASFENLTTLEVSYCQRLKNLVSSSTAKSLVCLMK 168 (296)
Q Consensus 90 ~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~ 168 (296)
+|.++++. +..++... +..+++|+.|+++++ .+..++.. +..+++|++|+++++ .++.++.. .+..+++|++
T Consensus 80 ~L~Ls~n~-l~~~~~~~---~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~-~~~~l~~L~~ 152 (208)
T 2o6s_A 80 YLNLSTNQ-LQSLPNGV---FDKLTQLKELALNTN-QLQSLPDGVFDKLTQLKDLRLYQN-QLKSVPDG-VFDRLTSLQY 152 (208)
T ss_dssp EEECCSSC-CCCCCTTT---TTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTT-TTTTCTTCCE
T ss_pred EEECCCCc-CCccCHhH---hcCccCCCEEEcCCC-cCcccCHhHhccCCcCCEEECCCC-ccceeCHH-HhccCCCccE
Confidence 88887753 33433221 456788888888876 45555543 566788888888875 45554432 3567788888
Q ss_pred EEEeCccccceecccccccccccccCCccceeeccCCc
Q 022501 169 LRIDGCKLMTEIISSEGDVEEDEIVFSRLKWLSLECLD 206 (296)
Q Consensus 169 L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 206 (296)
|++++|+.. + .+++|+.|+++...
T Consensus 153 L~l~~N~~~-------~-------~~~~l~~L~~~~n~ 176 (208)
T 2o6s_A 153 IWLHDNPWD-------C-------TCPGIRYLSEWINK 176 (208)
T ss_dssp EECCSCCBC-------C-------CTTTTHHHHHHHHH
T ss_pred EEecCCCee-------c-------CCCCHHHHHHHHHh
Confidence 888887532 1 26778888776543
No 93
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.43 E-value=2e-14 Score=133.75 Aligned_cols=161 Identities=17% Similarity=0.107 Sum_probs=86.2
Q ss_pred ccc-ceEEEeeccC-ccccc-cCCCCCCcCCCccEEEeccCCCCccC----hHHHhcCCcccEEEEeccccceEeecCcc
Q 022501 6 IAN-LEELKLSGKD-ITMIC-HDHLPKHLFQNLKSLEIVSDKSDNFS----IGFLQRFHNVERLKLRNSSYKEIFSNGEV 78 (296)
Q Consensus 6 l~~-L~~L~L~~~~-~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~----~~~~~~l~~L~~L~l~~~~~~~~~~~~~~ 78 (296)
+++ |++|+++++. +.... ..... .+++|++|++++|.+.... ......+++|++|+++++.+..+ ....+
T Consensus 136 ~~~~L~~L~L~~~~~~~~~~l~~~~~--~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~-~~~~l 212 (592)
T 3ogk_B 136 RADDLETLKLDKCSGFTTDGLLSIVT--HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKI-SPKDL 212 (592)
T ss_dssp HGGGCCEEEEESCEEEEHHHHHHHHH--HCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSC-CHHHH
T ss_pred ccccCcEEECcCCCCcCHHHHHHHHh--hCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCcc-CHHHH
Confidence 555 9999998844 33211 11122 6899999999888654332 23556889999999988865422 11122
Q ss_pred ccccCCccccceeEecccccccccccc-----------------------cCcccccCCCccEEEeccCccccccccCcc
Q 022501 79 EKQAGMLTQIKSLKLWELSNLLHIWEQ-----------------------CYKLDSVFQNLETLEIWWCNNLINLVPSSA 135 (296)
Q Consensus 79 ~~~~~~~~~L~~L~l~~~~~l~~~~~~-----------------------~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~ 135 (296)
......+++|+.|.++++... .++.. ....+..+++|+.+.+.++ ....++....
T Consensus 213 ~~~~~~~~~L~~L~L~~~~~~-~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~l~~~~~ 290 (592)
T 3ogk_B 213 ETIARNCRSLVSVKVGDFEIL-ELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYM-GPNEMPILFP 290 (592)
T ss_dssp HHHHHHCTTCCEEECSSCBGG-GGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTC-CTTTGGGGGG
T ss_pred HHHHhhCCCCcEEeccCccHH-HHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCcccc-chhHHHHHHh
Confidence 223344777888877775421 11111 0001233334444444432 1223333344
Q ss_pred ccCCccEEEeccCcCccccCCcccccCCCCccEEEEe
Q 022501 136 SFENLTTLEVSYCQRLKNLVSSSTAKSLVCLMKLRID 172 (296)
Q Consensus 136 ~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~ 172 (296)
.+++|++|++++|. +++......+..+++|++|++.
T Consensus 291 ~~~~L~~L~Ls~~~-l~~~~~~~~~~~~~~L~~L~L~ 326 (592)
T 3ogk_B 291 FAAQIRKLDLLYAL-LETEDHCTLIQKCPNLEVLETR 326 (592)
T ss_dssp GGGGCCEEEETTCC-CCHHHHHHHHTTCTTCCEEEEE
T ss_pred hcCCCcEEecCCCc-CCHHHHHHHHHhCcCCCEEecc
Confidence 56677777777665 3322211223556666666665
No 94
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.43 E-value=5e-13 Score=124.35 Aligned_cols=167 Identities=18% Similarity=0.231 Sum_probs=108.5
Q ss_pred cccceEEEeeccCccccccCCCCCCcCCCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCccccccCCc
Q 022501 6 IANLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGML 85 (296)
Q Consensus 6 l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 85 (296)
+++|+.|+++++.+..++ .+. .+++|+.|++++|.+..+++ +..+++|+.|++++|.+..+. ....+
T Consensus 42 L~~L~~L~l~~n~i~~l~--~l~--~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-------~l~~l 108 (605)
T 1m9s_A 42 LNSIDQIIANNSDIKSVQ--GIQ--YLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDLS-------SLKDL 108 (605)
T ss_dssp HTTCCCCBCTTCCCCCCT--TGG--GCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCT-------TSTTC
T ss_pred CCCCCEEECcCCCCCCCh--HHc--cCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCCCh-------hhccC
Confidence 677788888777777663 244 67888888888877776664 677888888888887665542 13447
Q ss_pred cccceeEecccccccccccccCcccccCCCccEEEeccCccccccccCccccCCccEEEeccCcCccccCCcccccCCCC
Q 022501 86 TQIKSLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCNNLINLVPSSASFENLTTLEVSYCQRLKNLVSSSTAKSLVC 165 (296)
Q Consensus 86 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~ 165 (296)
++|+.|.++++. +..++. +..+++|+.|++++| .+..+ ..+..+++|+.|++++|. +.+..+ +..+++
T Consensus 109 ~~L~~L~Ls~N~-l~~l~~-----l~~l~~L~~L~Ls~N-~l~~l-~~l~~l~~L~~L~Ls~N~-l~~~~~---l~~l~~ 176 (605)
T 1m9s_A 109 KKLKSLSLEHNG-ISDING-----LVHLPQLESLYLGNN-KITDI-TVLSRLTKLDTLSLEDNQ-ISDIVP---LAGLTK 176 (605)
T ss_dssp TTCCEEECTTSC-CCCCGG-----GGGCTTCSEEECCSS-CCCCC-GGGGSCTTCSEEECCSSC-CCCCGG---GTTCTT
T ss_pred CCCCEEEecCCC-CCCCcc-----ccCCCccCEEECCCC-ccCCc-hhhcccCCCCEEECcCCc-CCCchh---hccCCC
Confidence 778888887664 333321 556777888888776 34444 345567778888887653 444432 566777
Q ss_pred ccEEEEeCccccceecccccccccccccCCccceeeccCCc
Q 022501 166 LMKLRIDGCKLMTEIISSEGDVEEDEIVFSRLKWLSLECLD 206 (296)
Q Consensus 166 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 206 (296)
|+.|++++|. +..+.. +..+++|+.|++++++
T Consensus 177 L~~L~Ls~N~-i~~l~~--------l~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 177 LQNLYLSKNH-ISDLRA--------LAGLKNLDVLELFSQE 208 (605)
T ss_dssp CCEEECCSSC-CCBCGG--------GTTCTTCSEEECCSEE
T ss_pred CCEEECcCCC-CCCChH--------HccCCCCCEEEccCCc
Confidence 8888887764 333321 3337777777777653
No 95
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.41 E-value=2.2e-14 Score=125.66 Aligned_cols=243 Identities=14% Similarity=0.019 Sum_probs=153.2
Q ss_pred cccceEEEeeccCcccccc----CCCCCCcCC-CccEEEeccCCCCccChHHHhcC-----CcccEEEEeccccceEeec
Q 022501 6 IANLEELKLSGKDITMICH----DHLPKHLFQ-NLKSLEIVSDKSDNFSIGFLQRF-----HNVERLKLRNSSYKEIFSN 75 (296)
Q Consensus 6 l~~L~~L~L~~~~~~~~~~----~~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~l-----~~L~~L~l~~~~~~~~~~~ 75 (296)
.++|++|+++++.+.+... ..+. .++ +|++|++++|.+.......+..+ ++|++|++++|.+....+.
T Consensus 21 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~--~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~ 98 (362)
T 3goz_A 21 PHGVTSLDLSLNNLYSISTVELIQAFA--NTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSD 98 (362)
T ss_dssp CTTCCEEECTTSCGGGSCHHHHHHHHH--TCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHH
T ss_pred CCCceEEEccCCCCChHHHHHHHHHHH--hCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHH
Confidence 3459999999999888754 3344 677 89999999998887766566654 9999999999977654221
Q ss_pred CccccccCCc-cccceeEecccccccccccccC-ccccc-CCCccEEEeccCcccc----ccccCccccC-CccEEEecc
Q 022501 76 GEVEKQAGML-TQIKSLKLWELSNLLHIWEQCY-KLDSV-FQNLETLEIWWCNNLI----NLVPSSASFE-NLTTLEVSY 147 (296)
Q Consensus 76 ~~~~~~~~~~-~~L~~L~l~~~~~l~~~~~~~~-~~~~~-~~~L~~L~l~~~~~l~----~~~~~~~~l~-~L~~L~l~~ 147 (296)
.+......+ ++|++|+++++. +...+.... ..+.. .++|++|++++|..-. .++..+..++ +|++|++++
T Consensus 99 -~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~ 176 (362)
T 3goz_A 99 -ELVKTLAAIPFTITVLDLGWND-FSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRG 176 (362)
T ss_dssp -HHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTT
T ss_pred -HHHHHHHhCCCCccEEECcCCc-CCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecC
Confidence 111112224 799999999876 333222110 00222 3589999999874331 2222333344 899999998
Q ss_pred CcCccccCCcc---cccCC-CCccEEEEeCccccceeccccccccccccc-CCccceeeccCCcCcceecC---CCcccc
Q 022501 148 CQRLKNLVSSS---TAKSL-VCLMKLRIDGCKLMTEIISSEGDVEEDEIV-FSRLKWLSLECLDSLTSFCS---GNCTFK 219 (296)
Q Consensus 148 c~~l~~~~~~~---~~~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~-~~~L~~L~l~~~~~L~~l~~---~~~~~~ 219 (296)
|. +++..... .+... ++|++|++++|..-..-.... ...+.. .++|++|+++++. +.+... ......
T Consensus 177 n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l---~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~~~~ 251 (362)
T 3goz_A 177 NN-LASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAEL---AYIFSSIPNHVVSLNLCLNC-LHGPSLENLKLLKDS 251 (362)
T ss_dssp SC-GGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHH---HHHHHHSCTTCCEEECCSSC-CCCCCHHHHHHTTTT
T ss_pred CC-CchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHH---HHHHhcCCCCceEEECcCCC-CCcHHHHHHHHHHhc
Confidence 74 54433211 23344 599999999986322110000 001112 3599999999874 555322 112346
Q ss_pred CCCccEEeeccCC-------ccccccCCcccCCCcceEEcccCCc
Q 022501 220 FPSLEDLFVIDCP-------KMMIFSFGVLSTPRLREVRKNWGLD 257 (296)
Q Consensus 220 ~~~L~~L~l~~c~-------~l~~~~~~~~~~~~L~~l~l~~~~~ 257 (296)
+++|+.|++++|. .+..++.....+++|++++++.+..
T Consensus 252 l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l 296 (362)
T 3goz_A 252 LKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEI 296 (362)
T ss_dssp TTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBC
T ss_pred CCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcC
Confidence 7899999999985 1333455556778899999976543
No 96
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.40 E-value=2.4e-13 Score=126.44 Aligned_cols=192 Identities=14% Similarity=0.138 Sum_probs=142.5
Q ss_pred cceEEEeeccCccccccCCCCCCcCCCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCccccccCCccc
Q 022501 8 NLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGMLTQ 87 (296)
Q Consensus 8 ~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 87 (296)
++..+.+..+.+.++.. .. .+++|+.|++++|.+..++ .+..+++|++|++++|.+..+.+ ...+++
T Consensus 22 ~l~~l~l~~~~i~~~~~--~~--~L~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~Ls~N~l~~~~~-------l~~l~~ 88 (605)
T 1m9s_A 22 ETIKDNLKKKSVTDAVT--QN--ELNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDIKP-------LTNLKN 88 (605)
T ss_dssp HHHHHHTTCSCTTSEEC--HH--HHTTCCCCBCTTCCCCCCT--TGGGCTTCCEEECTTSCCCCCGG-------GGGCTT
T ss_pred HHHHHhccCCCcccccc--hh--cCCCCCEEECcCCCCCCCh--HHccCCCCCEEEeeCCCCCCChh-------hccCCC
Confidence 34444455555555421 22 7899999999999988887 47889999999999998877654 345999
Q ss_pred cceeEecccccccccccccCcccccCCCccEEEeccCccccccccCccccCCccEEEeccCcCccccCCcccccCCCCcc
Q 022501 88 IKSLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCNNLINLVPSSASFENLTTLEVSYCQRLKNLVSSSTAKSLVCLM 167 (296)
Q Consensus 88 L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~ 167 (296)
|+.|.++++. +..++ . +..+++|+.|++++|. +..++ .+..+++|+.|++++|. +..+ ..+..+++|+
T Consensus 89 L~~L~Ls~N~-l~~l~-~----l~~l~~L~~L~Ls~N~-l~~l~-~l~~l~~L~~L~Ls~N~-l~~l---~~l~~l~~L~ 156 (605)
T 1m9s_A 89 LGWLFLDENK-IKDLS-S----LKDLKKLKSLSLEHNG-ISDIN-GLVHLPQLESLYLGNNK-ITDI---TVLSRLTKLD 156 (605)
T ss_dssp CCEEECCSSC-CCCCT-T----STTCTTCCEEECTTSC-CCCCG-GGGGCTTCSEEECCSSC-CCCC---GGGGSCTTCS
T ss_pred CCEEECcCCC-CCCCh-h----hccCCCCCEEEecCCC-CCCCc-cccCCCccCEEECCCCc-cCCc---hhhcccCCCC
Confidence 9999999874 44443 2 7788999999999874 44443 46778999999999864 5554 3568899999
Q ss_pred EEEEeCccccceecccccccccccccCCccceeeccCCcCcceecCCCccccCCCccEEeeccCCcccccc
Q 022501 168 KLRIDGCKLMTEIISSEGDVEEDEIVFSRLKWLSLECLDSLTSFCSGNCTFKFPSLEDLFVIDCPKMMIFS 238 (296)
Q Consensus 168 ~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~L~~L~l~~c~~l~~~~ 238 (296)
.|++++|.. ..+.. +..+++|+.|+++++. +.+++ .+..+++|+.|++++|+ +...|
T Consensus 157 ~L~Ls~N~l-~~~~~--------l~~l~~L~~L~Ls~N~-i~~l~---~l~~l~~L~~L~L~~N~-l~~~p 213 (605)
T 1m9s_A 157 TLSLEDNQI-SDIVP--------LAGLTKLQNLYLSKNH-ISDLR---ALAGLKNLDVLELFSQE-CLNKP 213 (605)
T ss_dssp EEECCSSCC-CCCGG--------GTTCTTCCEEECCSSC-CCBCG---GGTTCTTCSEEECCSEE-EECCC
T ss_pred EEECcCCcC-CCchh--------hccCCCCCEEECcCCC-CCCCh---HHccCCCCCEEEccCCc-CcCCc
Confidence 999999853 33322 2348999999999974 66663 25688999999999985 44443
No 97
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.39 E-value=1.7e-14 Score=134.22 Aligned_cols=164 Identities=16% Similarity=0.202 Sum_probs=94.7
Q ss_pred ccccceEEEeec-cCcccccc--CCCC----------CCcCCCccEEEeccCCCCccChHHH-hcCCcccEEEEeccccc
Q 022501 5 VIANLEELKLSG-KDITMICH--DHLP----------KHLFQNLKSLEIVSDKSDNFSIGFL-QRFHNVERLKLRNSSYK 70 (296)
Q Consensus 5 ~l~~L~~L~L~~-~~~~~~~~--~~~~----------~~~l~~L~~L~l~~~~~~~~~~~~~-~~l~~L~~L~l~~~~~~ 70 (296)
.|++|++|++++ ..+.+... ...+ ...+++|++|++++|.........+ ..+++|++|++.+|.
T Consensus 64 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~-- 141 (594)
T 2p1m_B 64 RFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCE-- 141 (594)
T ss_dssp HCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCE--
T ss_pred hCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcC--
Confidence 488999999998 33443311 0000 0257899999998887653333333 478999999999882
Q ss_pred eEeecCccccccCCccccceeEecccccccccccccC-cccccCCCccEEEeccCc-ccc--ccccCccccCCccEEEec
Q 022501 71 EIFSNGEVEKQAGMLTQIKSLKLWELSNLLHIWEQCY-KLDSVFQNLETLEIWWCN-NLI--NLVPSSASFENLTTLEVS 146 (296)
Q Consensus 71 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~-~~~~~~~~L~~L~l~~~~-~l~--~~~~~~~~l~~L~~L~l~ 146 (296)
.+ ...++......+++|++|++++|. +........ .....+++|++|++++|. .+. .+......+++|++|+++
T Consensus 142 ~~-~~~~l~~~~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~ 219 (594)
T 2p1m_B 142 GF-STDGLAAIAATCRNLKELDLRESD-VDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLN 219 (594)
T ss_dssp EE-EHHHHHHHHHHCTTCCEEECTTCE-EECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECC
T ss_pred CC-CHHHHHHHHHhCCCCCEEeCcCCc-cCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecC
Confidence 22 111222333458889999988876 322111111 012356788888888775 111 111122346788888888
Q ss_pred cCcCccccCCcccccCCCCccEEEEeCc
Q 022501 147 YCQRLKNLVSSSTAKSLVCLMKLRIDGC 174 (296)
Q Consensus 147 ~c~~l~~~~~~~~~~~l~~L~~L~l~~~ 174 (296)
+|..+..++ ..+..+++|++|.+..+
T Consensus 220 ~~~~~~~l~--~~~~~~~~L~~L~l~~~ 245 (594)
T 2p1m_B 220 RAVPLEKLA--TLLQRAPQLEELGTGGY 245 (594)
T ss_dssp TTSCHHHHH--HHHHHCTTCSEEECSBC
T ss_pred CCCcHHHHH--HHHhcCCcceEcccccc
Confidence 775555432 23456667777765433
No 98
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.39 E-value=3.4e-12 Score=102.75 Aligned_cols=175 Identities=16% Similarity=0.086 Sum_probs=82.1
Q ss_pred EEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCccccccCCccccceeEecccccccccccccCcccccCCCc
Q 022501 37 SLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGMLTQIKSLKLWELSNLLHIWEQCYKLDSVFQNL 116 (296)
Q Consensus 37 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L 116 (296)
.++.+++....+|.. -.++|++|+++++.+..+.+ .....+++|++|.++++ .+..++... +..+++|
T Consensus 11 ~v~c~~~~l~~~p~~---~~~~l~~L~l~~n~l~~~~~-----~~~~~l~~L~~L~l~~n-~l~~~~~~~---~~~l~~L 78 (208)
T 2o6s_A 11 TVECYSQGRTSVPTG---IPAQTTYLDLETNSLKSLPN-----GVFDELTSLTQLYLGGN-KLQSLPNGV---FNKLTSL 78 (208)
T ss_dssp EEECCSSCCSSCCSC---CCTTCSEEECCSSCCCCCCT-----TTTTTCTTCSEEECCSS-CCCCCCTTT---TTTCTTC
T ss_pred EEEecCCCccCCCCC---CCCCCcEEEcCCCccCcCCh-----hhhcccccCcEEECCCC-ccCccChhh---cCCCCCc
Confidence 444444444444431 23456666666665543321 11133566666666653 233332211 3445566
Q ss_pred cEEEeccCccccccccC-ccccCCccEEEeccCcCccccCCcccccCCCCccEEEEeCccccceecccccccccccccCC
Q 022501 117 ETLEIWWCNNLINLVPS-SASFENLTTLEVSYCQRLKNLVSSSTAKSLVCLMKLRIDGCKLMTEIISSEGDVEEDEIVFS 195 (296)
Q Consensus 117 ~~L~l~~~~~l~~~~~~-~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~ 195 (296)
++|+++++ .+..++.. +..+++|++|+++++ .+..++.. .+..+++|++|++++|. +..++.. .+..++
T Consensus 79 ~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~-~~~~l~~L~~L~l~~N~-l~~~~~~------~~~~l~ 148 (208)
T 2o6s_A 79 TYLNLSTN-QLQSLPNGVFDKLTQLKELALNTN-QLQSLPDG-VFDKLTQLKDLRLYQNQ-LKSVPDG------VFDRLT 148 (208)
T ss_dssp CEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTT-TTTTCTTCCEEECCSSC-CSCCCTT------TTTTCT
T ss_pred CEEECCCC-cCCccCHhHhcCccCCCEEEcCCC-cCcccCHh-HhccCCcCCEEECCCCc-cceeCHH------HhccCC
Confidence 66666654 23333332 345566666666553 34333321 23455666666666653 2222221 122255
Q ss_pred ccceeeccCCcCcceecCCCccccCCCccEEeeccCCccccccCCcc
Q 022501 196 RLKWLSLECLDSLTSFCSGNCTFKFPSLEDLFVIDCPKMMIFSFGVL 242 (296)
Q Consensus 196 ~L~~L~l~~~~~L~~l~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~ 242 (296)
+|++|++++.+- ...+++|+.|.++.+..-..+|..++
T Consensus 149 ~L~~L~l~~N~~---------~~~~~~l~~L~~~~n~~~g~ip~~~~ 186 (208)
T 2o6s_A 149 SLQYIWLHDNPW---------DCTCPGIRYLSEWINKHSGVVRNSAG 186 (208)
T ss_dssp TCCEEECCSCCB---------CCCTTTTHHHHHHHHHCTTTBBCTTS
T ss_pred CccEEEecCCCe---------ecCCCCHHHHHHHHHhCCceeeccCc
Confidence 666666665431 12345566666655444444554443
No 99
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.39 E-value=2.5e-12 Score=109.09 Aligned_cols=147 Identities=24% Similarity=0.261 Sum_probs=116.5
Q ss_pred ccccceEEEeeccCccccccCCCCCCcCCCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCccccccCC
Q 022501 5 VIANLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGM 84 (296)
Q Consensus 5 ~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 84 (296)
.+++|++|++++|+++++.+ +. .+++|+.|++++|.+..++. +..+++|++|++++|.+..+.. ...
T Consensus 66 ~l~~L~~L~L~~n~l~~~~~--l~--~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~n~i~~~~~-------l~~ 132 (291)
T 1h6t_A 66 YLPNVTKLFLNGNKLTDIKP--LA--NLKNLGWLFLDENKVKDLSS--LKDLKKLKSLSLEHNGISDING-------LVH 132 (291)
T ss_dssp GCTTCCEEECCSSCCCCCGG--GT--TCTTCCEEECCSSCCCCGGG--GTTCTTCCEEECTTSCCCCCGG-------GGG
T ss_pred cCCCCCEEEccCCccCCCcc--cc--cCCCCCEEECCCCcCCCChh--hccCCCCCEEECCCCcCCCChh-------hcC
Confidence 37899999999999998854 55 89999999999999888763 7899999999999998776522 344
Q ss_pred ccccceeEecccccccccccccCcccccCCCccEEEeccCccccccccCccccCCccEEEeccCcCccccCCcccccCCC
Q 022501 85 LTQIKSLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCNNLINLVPSSASFENLTTLEVSYCQRLKNLVSSSTAKSLV 164 (296)
Q Consensus 85 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~ 164 (296)
+++|+.|.++++. +..++ . +..+++|+.|++++| .+..+++ +..+++|+.|+++++ .+++++ .+..++
T Consensus 133 l~~L~~L~l~~n~-l~~~~-~----l~~l~~L~~L~L~~N-~l~~~~~-l~~l~~L~~L~L~~N-~i~~l~---~l~~l~ 200 (291)
T 1h6t_A 133 LPQLESLYLGNNK-ITDIT-V----LSRLTKLDTLSLEDN-QISDIVP-LAGLTKLQNLYLSKN-HISDLR---ALAGLK 200 (291)
T ss_dssp CTTCCEEECCSSC-CCCCG-G----GGGCTTCSEEECCSS-CCCCCGG-GTTCTTCCEEECCSS-CCCBCG---GGTTCT
T ss_pred CCCCCEEEccCCc-CCcch-h----hccCCCCCEEEccCC-ccccchh-hcCCCccCEEECCCC-cCCCCh---hhccCC
Confidence 8999999999864 33432 2 677889999999987 4555554 677899999999876 466553 367889
Q ss_pred CccEEEEeCccc
Q 022501 165 CLMKLRIDGCKL 176 (296)
Q Consensus 165 ~L~~L~l~~~~~ 176 (296)
+|+.|++++|+.
T Consensus 201 ~L~~L~l~~n~i 212 (291)
T 1h6t_A 201 NLDVLELFSQEC 212 (291)
T ss_dssp TCSEEEEEEEEE
T ss_pred CCCEEECcCCcc
Confidence 999999998764
No 100
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.38 E-value=1.1e-14 Score=135.33 Aligned_cols=91 Identities=23% Similarity=0.244 Sum_probs=58.6
Q ss_pred ccccceEEEeeccCccccccCCCCCCcCCCccEEEeccCCCC-c-cChHHHhcCCcccEEEEeccccceEeecCcccccc
Q 022501 5 VIANLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSD-N-FSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQA 82 (296)
Q Consensus 5 ~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 82 (296)
.+++|++|+++++.+.+.....+.. .+++|++|++.+|... . .....+.++++|++|++.+|.+.... ...+....
T Consensus 103 ~~~~L~~L~L~~~~~~~~~~~~l~~-~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~-~~~l~~~~ 180 (594)
T 2p1m_B 103 SYTWLEEIRLKRMVVTDDCLELIAK-SFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVS-GHWLSHFP 180 (594)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHH-HCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCC-GGGGGGSC
T ss_pred hCCCCCeEEeeCcEEcHHHHHHHHH-hCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcc-hHHHHHHh
Confidence 4789999999997776653333321 5889999999888433 2 12345568999999999988543321 12223333
Q ss_pred CCccccceeEecccc
Q 022501 83 GMLTQIKSLKLWELS 97 (296)
Q Consensus 83 ~~~~~L~~L~l~~~~ 97 (296)
..+++|++|+++++.
T Consensus 181 ~~~~~L~~L~l~~~~ 195 (594)
T 2p1m_B 181 DTYTSLVSLNISCLA 195 (594)
T ss_dssp TTCCCCCEEECTTCC
T ss_pred hcCCcCcEEEecccC
Confidence 456677777777654
No 101
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.35 E-value=4.3e-12 Score=106.05 Aligned_cols=165 Identities=18% Similarity=0.216 Sum_probs=88.5
Q ss_pred cccceEEEeeccCccccccCCCCCCcCCCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCccccccCCc
Q 022501 6 IANLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGML 85 (296)
Q Consensus 6 l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 85 (296)
+.++..+.++++.++++. .+. .+++|+.|++++|.+..++ .+..+++|++|++++|.+.++.+ ...+
T Consensus 18 l~~l~~l~l~~~~i~~~~--~~~--~l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~L~~N~i~~~~~-------l~~l 84 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDLV--SQK--ELSGVQNFNGDNSNIQSLA--GMQFFTNLKELHLSHNQISDLSP-------LKDL 84 (263)
T ss_dssp HHHHHHHHHTCSCTTSEE--CHH--HHTTCSEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG-------GTTC
T ss_pred HHHHHHHHhcCCCccccc--chh--hcCcCcEEECcCCCcccch--HHhhCCCCCEEECCCCccCCChh-------hccC
Confidence 344555555555555543 233 5666666666666665555 35566666666666665554433 2336
Q ss_pred cccceeEecccccccccccccCcccccCCCccEEEeccCccccccccCccccCCccEEEeccCcCccccCCcccccCCCC
Q 022501 86 TQIKSLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCNNLINLVPSSASFENLTTLEVSYCQRLKNLVSSSTAKSLVC 165 (296)
Q Consensus 86 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~ 165 (296)
++|+.|.++++. +..++. ... ++|+.|+++++ .+..++ .+..+++|+.|+++++ .++++. .+..+++
T Consensus 85 ~~L~~L~L~~N~-l~~l~~-----~~~-~~L~~L~L~~N-~l~~~~-~l~~l~~L~~L~Ls~N-~i~~~~---~l~~l~~ 151 (263)
T 1xeu_A 85 TKLEELSVNRNR-LKNLNG-----IPS-ACLSRLFLDNN-ELRDTD-SLIHLKNLEILSIRNN-KLKSIV---MLGFLSK 151 (263)
T ss_dssp SSCCEEECCSSC-CSCCTT-----CCC-SSCCEEECCSS-CCSBSG-GGTTCTTCCEEECTTS-CCCBCG---GGGGCTT
T ss_pred CCCCEEECCCCc-cCCcCc-----ccc-CcccEEEccCC-ccCCCh-hhcCcccccEEECCCC-cCCCCh---HHccCCC
Confidence 666666666543 233322 112 56666666665 333333 3455666666666654 344432 3455666
Q ss_pred ccEEEEeCccccceecccccccccccccCCccceeeccCC
Q 022501 166 LMKLRIDGCKLMTEIISSEGDVEEDEIVFSRLKWLSLECL 205 (296)
Q Consensus 166 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 205 (296)
|++|++++|.. ..+ . .+..+++|+.|++++.
T Consensus 152 L~~L~L~~N~i-~~~-~-------~l~~l~~L~~L~l~~N 182 (263)
T 1xeu_A 152 LEVLDLHGNEI-TNT-G-------GLTRLKKVNWIDLTGQ 182 (263)
T ss_dssp CCEEECTTSCC-CBC-T-------TSTTCCCCCEEEEEEE
T ss_pred CCEEECCCCcC-cch-H-------HhccCCCCCEEeCCCC
Confidence 66666666542 222 1 1233666666666654
No 102
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.35 E-value=2e-14 Score=129.63 Aligned_cols=15 Identities=13% Similarity=0.297 Sum_probs=7.4
Q ss_pred cccceEEEeeccCcc
Q 022501 6 IANLEELKLSGKDIT 20 (296)
Q Consensus 6 l~~L~~L~L~~~~~~ 20 (296)
+++|++|+++++++.
T Consensus 27 ~~~L~~L~L~~~~l~ 41 (461)
T 1z7x_W 27 LQQCQVVRLDDCGLT 41 (461)
T ss_dssp HTTCSEEEEESSCCC
T ss_pred cCCccEEEccCCCCC
Confidence 445555555554444
No 103
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.34 E-value=1.9e-14 Score=129.75 Aligned_cols=241 Identities=16% Similarity=0.081 Sum_probs=117.7
Q ss_pred ccccceEEEeeccCccccccCCCCC---CcCCCccEEEeccCCCCccC----hHHHhcCCcccEEEEeccccceEeecCc
Q 022501 5 VIANLEELKLSGKDITMICHDHLPK---HLFQNLKSLEIVSDKSDNFS----IGFLQRFHNVERLKLRNSSYKEIFSNGE 77 (296)
Q Consensus 5 ~l~~L~~L~L~~~~~~~~~~~~~~~---~~l~~L~~L~l~~~~~~~~~----~~~~~~l~~L~~L~l~~~~~~~~~~~~~ 77 (296)
.+++|++|+++++.+.+.....+.. ...++|++|++++|.+.... ...+..+++|++|++++|.+..... ..
T Consensus 111 ~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~-~~ 189 (461)
T 1z7x_W 111 TLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGV-RV 189 (461)
T ss_dssp SCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHH-HH
T ss_pred cCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHH-HH
Confidence 3678999999988776543222210 13567888888888776433 2345667888888888875433211 00
Q ss_pred ccc-ccCCccccceeEecccccccc----cccccCcccccCCCccEEEeccCc---------------------------
Q 022501 78 VEK-QAGMLTQIKSLKLWELSNLLH----IWEQCYKLDSVFQNLETLEIWWCN--------------------------- 125 (296)
Q Consensus 78 ~~~-~~~~~~~L~~L~l~~~~~l~~----~~~~~~~~~~~~~~L~~L~l~~~~--------------------------- 125 (296)
+.. .....++|++|.++++..-.. ++.. +..+++|++|+++++.
T Consensus 190 l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~----l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~ 265 (461)
T 1z7x_W 190 LCQGLKDSPCQLEALKLESCGVTSDNCRDLCGI----VASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWE 265 (461)
T ss_dssp HHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHH----HHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTT
T ss_pred HHHHHhcCCCCceEEEccCCCCcHHHHHHHHHH----HHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcC
Confidence 000 001133566666655422110 1111 2233444444444432
Q ss_pred -cccc-----cccCccccCCccEEEeccCcCccccCCcc----cccCCCCccEEEEeCccccceecccccccccccccCC
Q 022501 126 -NLIN-----LVPSSASFENLTTLEVSYCQRLKNLVSSS----TAKSLVCLMKLRIDGCKLMTEIISSEGDVEEDEIVFS 195 (296)
Q Consensus 126 -~l~~-----~~~~~~~l~~L~~L~l~~c~~l~~~~~~~----~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~ 195 (296)
.++. ++..+..+++|++|+++++. +.+..... .....++|++|++++|........ .....+..++
T Consensus 266 n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~---~l~~~l~~~~ 341 (461)
T 1z7x_W 266 CGITAKGCGDLCRVLRAKESLKELSLAGNE-LGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCS---HFSSVLAQNR 341 (461)
T ss_dssp SCCCHHHHHHHHHHHHHCTTCCEEECTTCC-CHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHH---HHHHHHHHCS
T ss_pred CCCCHHHHHHHHHHHhhCCCcceEECCCCC-CchHHHHHHHHHhccCCccceeeEcCCCCCchHHHH---HHHHHHhhCC
Confidence 2222 22223334455555555432 22111000 011224555555555542111000 0001122357
Q ss_pred ccceeeccCCcCcceecCCCcc----ccCCCccEEeeccCCccc-----cccCCcccCCCcceEEcccCC
Q 022501 196 RLKWLSLECLDSLTSFCSGNCT----FKFPSLEDLFVIDCPKMM-----IFSFGVLSTPRLREVRKNWGL 256 (296)
Q Consensus 196 ~L~~L~l~~~~~L~~l~~~~~~----~~~~~L~~L~l~~c~~l~-----~~~~~~~~~~~L~~l~l~~~~ 256 (296)
+|++|+++++. +.+....... ...++|++|++++|. ++ .+|..+..+++|++++++.+.
T Consensus 342 ~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~l~~N~ 409 (461)
T 1z7x_W 342 FLLELQISNNR-LEDAGVRELCQGLGQPGSVLRVLWLADCD-VSDSSCSSLAATLLANHSLRELDLSNNC 409 (461)
T ss_dssp SCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSC-CCHHHHHHHHHHHHHCCCCCEEECCSSS
T ss_pred CccEEEccCCc-cccccHHHHHHHHcCCCCceEEEECCCCC-CChhhHHHHHHHHHhCCCccEEECCCCC
Confidence 77777777763 4432211100 125688888888874 44 566666677888888887543
No 104
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.33 E-value=6.1e-12 Score=102.92 Aligned_cols=151 Identities=17% Similarity=0.130 Sum_probs=108.1
Q ss_pred ceEEEeeccCccccccCCCCCCcCCCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCccccccCCcccc
Q 022501 9 LEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGMLTQI 88 (296)
Q Consensus 9 L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L 88 (296)
-+.++.+++++..++ . . ..++|+.|++++|.+..+++..+..+++|++|++++|.+..+.+ .....+++|
T Consensus 21 ~~~v~c~~~~l~~ip-~--~--~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~-----~~~~~l~~L 90 (229)
T 3e6j_A 21 GTTVDCRSKRHASVP-A--G--IPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPV-----GVFDSLTQL 90 (229)
T ss_dssp TTEEECTTSCCSSCC-S--C--CCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT-----TTTTTCTTC
T ss_pred CCEeEccCCCcCccC-C--C--CCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcCh-----hhcccCCCc
Confidence 345677667776663 2 2 34788888888888887766677888888999888887755432 112458888
Q ss_pred ceeEecccccccccccccCcccccCCCccEEEeccCccccccccCccccCCccEEEeccCcCccccCCcccccCCCCccE
Q 022501 89 KSLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCNNLINLVPSSASFENLTTLEVSYCQRLKNLVSSSTAKSLVCLMK 168 (296)
Q Consensus 89 ~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~ 168 (296)
+.|.++++ .+..++... +..+++|+.|+++++ .+..+|..+..+++|++|+++++ .+..++. ..+..+++|+.
T Consensus 91 ~~L~Ls~N-~l~~l~~~~---~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~L~~N-~l~~~~~-~~~~~l~~L~~ 163 (229)
T 3e6j_A 91 TVLDLGTN-QLTVLPSAV---FDRLVHLKELFMCCN-KLTELPRGIERLTHLTHLALDQN-QLKSIPH-GAFDRLSSLTH 163 (229)
T ss_dssp CEEECCSS-CCCCCCTTT---TTTCTTCCEEECCSS-CCCSCCTTGGGCTTCSEEECCSS-CCCCCCT-TTTTTCTTCCE
T ss_pred CEEECCCC-cCCccChhH---hCcchhhCeEeccCC-cccccCcccccCCCCCEEECCCC-cCCccCH-HHHhCCCCCCE
Confidence 88888876 344443321 456888999999885 56678777788899999999875 5665544 24677889999
Q ss_pred EEEeCccc
Q 022501 169 LRIDGCKL 176 (296)
Q Consensus 169 L~l~~~~~ 176 (296)
|++.+++.
T Consensus 164 L~l~~N~~ 171 (229)
T 3e6j_A 164 AYLFGNPW 171 (229)
T ss_dssp EECTTSCB
T ss_pred EEeeCCCc
Confidence 99988764
No 105
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.33 E-value=6.6e-12 Score=102.07 Aligned_cols=151 Identities=15% Similarity=0.176 Sum_probs=107.8
Q ss_pred eEEEeeccCccccccCCCCCCcCCCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCccccccCCccccc
Q 022501 10 EELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGMLTQIK 89 (296)
Q Consensus 10 ~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~ 89 (296)
+.+++++++++.++ .. ..++|+.|++++|.+..++...+..+++|++|++++|.+..+.+ .....+++|+
T Consensus 14 ~~v~c~~~~l~~iP-~~----l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~-----~~~~~l~~L~ 83 (220)
T 2v9t_B 14 NIVDCRGKGLTEIP-TN----LPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAP-----DAFQGLRSLN 83 (220)
T ss_dssp TEEECTTSCCSSCC-SS----CCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECT-----TTTTTCSSCC
T ss_pred CEEEcCCCCcCcCC-Cc----cCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCH-----HHhhCCcCCC
Confidence 45677777777763 22 23688999998888888887778888999999999888776633 1224588899
Q ss_pred eeEecccccccccccccCcccccCCCccEEEeccCccccccccCccccCCccEEEeccCcCccccCCcccccCCCCccEE
Q 022501 90 SLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCNNLINLVPSSASFENLTTLEVSYCQRLKNLVSSSTAKSLVCLMKL 169 (296)
Q Consensus 90 ~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L 169 (296)
+|.++++. +..++... +..+++|+.|+++++......+..+..+++|++|+++++ .++.++.. .+..+++|++|
T Consensus 84 ~L~Ls~N~-l~~l~~~~---f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~-~~~~l~~L~~L 157 (220)
T 2v9t_B 84 SLVLYGNK-ITELPKSL---FEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDN-KLQTIAKG-TFSPLRAIQTM 157 (220)
T ss_dssp EEECCSSC-CCCCCTTT---TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTT-TTTTCTTCCEE
T ss_pred EEECCCCc-CCccCHhH---ccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCC-cCCEECHH-HHhCCCCCCEE
Confidence 99988753 44554332 456888999999886433333445677899999999875 45555432 46778899999
Q ss_pred EEeCccc
Q 022501 170 RIDGCKL 176 (296)
Q Consensus 170 ~l~~~~~ 176 (296)
++++++.
T Consensus 158 ~L~~N~~ 164 (220)
T 2v9t_B 158 HLAQNPF 164 (220)
T ss_dssp ECCSSCE
T ss_pred EeCCCCc
Confidence 9998764
No 106
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.31 E-value=2.3e-11 Score=98.83 Aligned_cols=151 Identities=11% Similarity=0.120 Sum_probs=99.2
Q ss_pred eEEEeeccCccccccCCCCCCcCCCccEEEeccCCCCcc-ChHHHhcCCcccEEEEeccccceEeecCccccccCCcccc
Q 022501 10 EELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSDNF-SIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGMLTQI 88 (296)
Q Consensus 10 ~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L 88 (296)
++++++++.++.++ .. ..+.++.|++++|.+..+ +...+..+++|++|++++|.+..+.+. ....+++|
T Consensus 14 ~~l~~s~n~l~~iP-~~----~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~-----~~~~l~~L 83 (220)
T 2v70_A 14 TTVDCSNQKLNKIP-EH----IPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEG-----AFEGASGV 83 (220)
T ss_dssp TEEECCSSCCSSCC-SC----CCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTT-----TTTTCTTC
T ss_pred CEeEeCCCCcccCc-cC----CCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHH-----HhCCCCCC
Confidence 57888888887763 22 345678899988888866 445678888999999988877766431 22447788
Q ss_pred ceeEecccccccccccccCcccccCCCccEEEeccCccccccccCccccCCccEEEeccCcCccccCCcccccCCCCccE
Q 022501 89 KSLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCNNLINLVPSSASFENLTTLEVSYCQRLKNLVSSSTAKSLVCLMK 168 (296)
Q Consensus 89 ~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~ 168 (296)
++|.++++.. ..++... +..+++|++|+++++......+..+..+++|+.|+++++ .++.+.+. .+..+++|++
T Consensus 84 ~~L~Ls~N~l-~~~~~~~---~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~-~~~~l~~L~~ 157 (220)
T 2v70_A 84 NEILLTSNRL-ENVQHKM---FKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDN-QITTVAPG-AFDTLHSLST 157 (220)
T ss_dssp CEEECCSSCC-CCCCGGG---GTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTS-CCCCBCTT-TTTTCTTCCE
T ss_pred CEEECCCCcc-CccCHhH---hcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCC-cCCEECHH-HhcCCCCCCE
Confidence 8888877543 3332221 456777888888776433333445666778888888764 45544332 3566777777
Q ss_pred EEEeCccc
Q 022501 169 LRIDGCKL 176 (296)
Q Consensus 169 L~l~~~~~ 176 (296)
|++++++.
T Consensus 158 L~L~~N~l 165 (220)
T 2v70_A 158 LNLLANPF 165 (220)
T ss_dssp EECCSCCE
T ss_pred EEecCcCC
Confidence 77777653
No 107
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.30 E-value=2.4e-11 Score=104.86 Aligned_cols=221 Identities=14% Similarity=0.077 Sum_probs=115.8
Q ss_pred cccceEEEeeccCcc--------------------ccccCCCCCCc--------CCCccEEEeccCCCCccChHHHhcCC
Q 022501 6 IANLEELKLSGKDIT--------------------MICHDHLPKHL--------FQNLKSLEIVSDKSDNFSIGFLQRFH 57 (296)
Q Consensus 6 l~~L~~L~L~~~~~~--------------------~~~~~~~~~~~--------l~~L~~L~l~~~~~~~~~~~~~~~l~ 57 (296)
+++|++|+|+++++. .++...|. . +++|+.+++.+ .+..++...|.+|+
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~--~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~ 124 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFS--NVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCD 124 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTE--EEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCT
T ss_pred hccCeEEecCcceeEEecCccccccccccccccccccCHHHhc--ccccccccccCCCcEEECCc-cccchhHHHhhcCc
Confidence 678999999998887 23333333 5 77777777766 56667777777777
Q ss_pred cccEEEEeccccceEeecCccccccCCccccceeEecccc---cccccccccCcccccCCCcc-EEEeccCccccc----
Q 022501 58 NVERLKLRNSSYKEIFSNGEVEKQAGMLTQIKSLKLWELS---NLLHIWEQCYKLDSVFQNLE-TLEIWWCNNLIN---- 129 (296)
Q Consensus 58 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~---~l~~~~~~~~~~~~~~~~L~-~L~l~~~~~l~~---- 129 (296)
+|++|.+.++.+..+.+ ..+ ..+.++..+...... ....+... .+..+..|+ .+.+.....+..
T Consensus 125 ~L~~l~l~~n~i~~i~~-~aF----~~~~~l~~l~~~~~~~~~~~~~i~~~---~f~~~~~L~~~i~~~~~~~l~~~~~~ 196 (329)
T 3sb4_A 125 NLKICQIRKKTAPNLLP-EAL----ADSVTAIFIPLGSSDAYRFKNRWEHF---AFIEGEPLETTIQVGAMGKLEDEIMK 196 (329)
T ss_dssp TCCEEEBCCSSCCEECT-TSS----CTTTCEEEECTTCTHHHHTSTTTTTS---CEEESCCCEEEEEECTTCCHHHHHHH
T ss_pred ccceEEcCCCCccccch-hhh----cCCCceEEecCcchhhhhcccccccc---ccccccccceeEEecCCCcHHHHHhh
Confidence 88888777776554432 111 113333333322100 00000000 011222333 222221111100
Q ss_pred ---------------------cccCccccCCccEEEeccCcCccccCCcccccCCCCccEEEEeCccccceecccccccc
Q 022501 130 ---------------------LVPSSASFENLTTLEVSYCQRLKNLVSSSTAKSLVCLMKLRIDGCKLMTEIISSEGDVE 188 (296)
Q Consensus 130 ---------------------~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 188 (296)
.......+++|+.+++.++ .++.++.. .+.++++|+++.+.++ ++.+...
T Consensus 197 ~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n-~i~~I~~~-aF~~~~~L~~l~l~~n--i~~I~~~----- 267 (329)
T 3sb4_A 197 AGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKT-NATTIPDF-TFAQKKYLLKIKLPHN--LKTIGQR----- 267 (329)
T ss_dssp TTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTB-CCCEECTT-TTTTCTTCCEEECCTT--CCEECTT-----
T ss_pred cccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCC-CcceecHh-hhhCCCCCCEEECCcc--cceehHH-----
Confidence 0000012567777777653 34444433 4566777777777664 4443321
Q ss_pred cccccCCccc-eeeccCCcCcceecCCCccccCCCccEEeeccCCccccccCC-cccCCCcceEE
Q 022501 189 EDEIVFSRLK-WLSLECLDSLTSFCSGNCTFKFPSLEDLFVIDCPKMMIFSFG-VLSTPRLREVR 251 (296)
Q Consensus 189 ~~~~~~~~L~-~L~l~~~~~L~~l~~~~~~~~~~~L~~L~l~~c~~l~~~~~~-~~~~~~L~~l~ 251 (296)
++..+++|+ .+.+.+ +++.+.... +..|++|+.+++.+. .++.++.. +..+++|+.++
T Consensus 268 -aF~~~~~L~~~l~l~~--~l~~I~~~a-F~~c~~L~~l~l~~n-~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 268 -VFSNCGRLAGTLELPA--SVTAIEFGA-FMGCDNLRYVLATGD-KITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp -TTTTCTTCCEEEEECT--TCCEECTTT-TTTCTTEEEEEECSS-CCCEECTTTTCTTCCCCEEE
T ss_pred -HhhCChhccEEEEEcc--cceEEchhh-hhCCccCCEEEeCCC-ccCccchhhhcCCcchhhhc
Confidence 344567777 777766 566665544 666777777777553 46566553 34566777665
No 108
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.29 E-value=2.7e-11 Score=98.43 Aligned_cols=148 Identities=12% Similarity=0.116 Sum_probs=77.4
Q ss_pred cEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCccccccCCccccceeEeccccccccc-ccccCcccccCC
Q 022501 36 KSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGMLTQIKSLKLWELSNLLHI-WEQCYKLDSVFQ 114 (296)
Q Consensus 36 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~-~~~~~~~~~~~~ 114 (296)
+.++.+++....+|... .++|++|++.+|.+..+.+. ....+++|+.|.++++. +..+ +.. +..++
T Consensus 14 ~~v~c~~~~l~~iP~~l---~~~l~~L~l~~n~i~~i~~~-----~~~~l~~L~~L~Ls~N~-i~~~~~~~----~~~l~ 80 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNL---PETITEIRLEQNTIKVIPPG-----AFSPYKKLRRIDLSNNQ-ISELAPDA----FQGLR 80 (220)
T ss_dssp TEEECTTSCCSSCCSSC---CTTCCEEECCSSCCCEECTT-----SSTTCTTCCEEECCSSC-CCEECTTT----TTTCS
T ss_pred CEEEcCCCCcCcCCCcc---CcCCCEEECCCCcCCCcCHh-----HhhCCCCCCEEECCCCc-CCCcCHHH----hhCCc
Confidence 45555555555555321 24666677766666554321 12336666666666543 2222 222 45566
Q ss_pred CccEEEeccCccccccccC-ccccCCccEEEeccCcCccccCCcccccCCCCccEEEEeCccccceeccccccccccccc
Q 022501 115 NLETLEIWWCNNLINLVPS-SASFENLTTLEVSYCQRLKNLVSSSTAKSLVCLMKLRIDGCKLMTEIISSEGDVEEDEIV 193 (296)
Q Consensus 115 ~L~~L~l~~~~~l~~~~~~-~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 193 (296)
+|+.|+++++ .+..++.. +..+++|+.|+++++ .+..+.+. .+..+++|++|++++|.. ..+... .+..
T Consensus 81 ~L~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~N-~l~~~~~~-~~~~l~~L~~L~L~~N~l-~~~~~~------~~~~ 150 (220)
T 2v9t_B 81 SLNSLVLYGN-KITELPKSLFEGLFSLQLLLLNAN-KINCLRVD-AFQDLHNLNLLSLYDNKL-QTIAKG------TFSP 150 (220)
T ss_dssp SCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTT-TTTTCTTCCEEECCSSCC-SCCCTT------TTTT
T ss_pred CCCEEECCCC-cCCccCHhHccCCCCCCEEECCCC-CCCEeCHH-HcCCCCCCCEEECCCCcC-CEECHH------HHhC
Confidence 6777777664 34444443 345666777776654 34444322 345566677777666542 222211 1223
Q ss_pred CCccceeeccCCc
Q 022501 194 FSRLKWLSLECLD 206 (296)
Q Consensus 194 ~~~L~~L~l~~~~ 206 (296)
+++|+.|++++.+
T Consensus 151 l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 151 LRAIQTMHLAQNP 163 (220)
T ss_dssp CTTCCEEECCSSC
T ss_pred CCCCCEEEeCCCC
Confidence 6666666666544
No 109
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.29 E-value=2.5e-12 Score=107.50 Aligned_cols=145 Identities=19% Similarity=0.222 Sum_probs=95.7
Q ss_pred cccceEEEeeccCccccccCCCCCCcCCCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCccccccCCc
Q 022501 6 IANLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGML 85 (296)
Q Consensus 6 l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 85 (296)
+++|++|++++++++.+. .+. .+++|+.|++++|.+..++. +..+++|++|++++|.+..+... ..
T Consensus 40 l~~L~~L~l~~n~i~~l~--~l~--~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l~~l~~~-------~~- 105 (263)
T 1xeu_A 40 LSGVQNFNGDNSNIQSLA--GMQ--FFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKNLNGI-------PS- 105 (263)
T ss_dssp HTTCSEEECTTSCCCCCT--TGG--GCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCCSCCTTC-------CC-
T ss_pred cCcCcEEECcCCCcccch--HHh--hCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCccCCcCcc-------cc-
Confidence 677788888877777653 344 67888888887777776665 67778888888887766554221 11
Q ss_pred cccceeEecccccccccccccCcccccCCCccEEEeccCccccccccCccccCCccEEEeccCcCccccCCcccccCCCC
Q 022501 86 TQIKSLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCNNLINLVPSSASFENLTTLEVSYCQRLKNLVSSSTAKSLVC 165 (296)
Q Consensus 86 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~ 165 (296)
++|+.|.++++. +..++ . +..+++|+.|+++++ .++.++ .+..+++|+.|+++++ .+.+. ..+..+++
T Consensus 106 ~~L~~L~L~~N~-l~~~~-~----l~~l~~L~~L~Ls~N-~i~~~~-~l~~l~~L~~L~L~~N-~i~~~---~~l~~l~~ 173 (263)
T 1xeu_A 106 ACLSRLFLDNNE-LRDTD-S----LIHLKNLEILSIRNN-KLKSIV-MLGFLSKLEVLDLHGN-EITNT---GGLTRLKK 173 (263)
T ss_dssp SSCCEEECCSSC-CSBSG-G----GTTCTTCCEEECTTS-CCCBCG-GGGGCTTCCEEECTTS-CCCBC---TTSTTCCC
T ss_pred CcccEEEccCCc-cCCCh-h----hcCcccccEEECCCC-cCCCCh-HHccCCCCCEEECCCC-cCcch---HHhccCCC
Confidence 677788877753 33332 1 556777888888775 355454 4556777888888765 34444 23566777
Q ss_pred ccEEEEeCccc
Q 022501 166 LMKLRIDGCKL 176 (296)
Q Consensus 166 L~~L~l~~~~~ 176 (296)
|+.|++++++.
T Consensus 174 L~~L~l~~N~~ 184 (263)
T 1xeu_A 174 VNWIDLTGQKC 184 (263)
T ss_dssp CCEEEEEEEEE
T ss_pred CCEEeCCCCcc
Confidence 88888877653
No 110
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.29 E-value=1.5e-11 Score=100.01 Aligned_cols=133 Identities=14% Similarity=0.162 Sum_probs=105.1
Q ss_pred cccceEEEeeccCcccccc-CCCCCCcCCCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCccccccCC
Q 022501 6 IANLEELKLSGKDITMICH-DHLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGM 84 (296)
Q Consensus 6 l~~L~~L~L~~~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 84 (296)
.+.+++|++++|+++.+.+ ..+. .+++|+.|++++|.+..++...+.++++|++|++++|.+..+.+ .....
T Consensus 31 ~~~~~~L~L~~N~l~~~~~~~~~~--~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~-----~~~~~ 103 (220)
T 2v70_A 31 PQYTAELRLNNNEFTVLEATGIFK--KLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQH-----KMFKG 103 (220)
T ss_dssp CTTCSEEECCSSCCCEECCCCCGG--GCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCG-----GGGTT
T ss_pred CCCCCEEEcCCCcCCccCchhhhc--cCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCH-----hHhcC
Confidence 4578999999999998843 3456 89999999999999998888888999999999999998876643 12345
Q ss_pred ccccceeEecccccccccccccCcccccCCCccEEEeccCcccccc-ccCccccCCccEEEeccCcC
Q 022501 85 LTQIKSLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCNNLINL-VPSSASFENLTTLEVSYCQR 150 (296)
Q Consensus 85 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~-~~~~~~l~~L~~L~l~~c~~ 150 (296)
+++|++|.++++.. ..+.... +..+++|+.|+++++. +..+ +..+..+++|+.|++++++-
T Consensus 104 l~~L~~L~Ls~N~l-~~~~~~~---~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l 165 (220)
T 2v70_A 104 LESLKTLMLRSNRI-TCVGNDS---FIGLSSVRLLSLYDNQ-ITTVAPGAFDTLHSLSTLNLLANPF 165 (220)
T ss_dssp CSSCCEEECTTSCC-CCBCTTS---STTCTTCSEEECTTSC-CCCBCTTTTTTCTTCCEEECCSCCE
T ss_pred CcCCCEEECCCCcC-CeECHhH---cCCCccCCEEECCCCc-CCEECHHHhcCCCCCCEEEecCcCC
Confidence 89999999998653 3432221 6678999999999964 4444 56677899999999998653
No 111
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.28 E-value=9.2e-12 Score=108.88 Aligned_cols=130 Identities=18% Similarity=0.135 Sum_probs=55.8
Q ss_pred CccEEEeccCCCCccChHHHh-cCCcccEEEEeccccceEeecCccccccCCccccceeEecccccccccccccCccccc
Q 022501 34 NLKSLEIVSDKSDNFSIGFLQ-RFHNVERLKLRNSSYKEIFSNGEVEKQAGMLTQIKSLKLWELSNLLHIWEQCYKLDSV 112 (296)
Q Consensus 34 ~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~ 112 (296)
.++.|++++|.+..++...+. .+++|++|++++|.+..+.+. ....+++|++|.++++. +..++... +..
T Consensus 40 ~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~-----~~~~l~~L~~L~Ls~N~-l~~~~~~~---~~~ 110 (361)
T 2xot_A 40 YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSE-----AFVPVPNLRYLDLSSNH-LHTLDEFL---FSD 110 (361)
T ss_dssp TCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTT-----TTTTCTTCCEEECCSSC-CCEECTTT---TTT
T ss_pred CCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChh-----hccCCCCCCEEECCCCc-CCcCCHHH---hCC
Confidence 455555555555544444443 455555555555544443221 11234555555555432 22222211 334
Q ss_pred CCCccEEEeccCccccccccCccccCCccEEEeccCcCccccCCcccc---cCCCCccEEEEeCc
Q 022501 113 FQNLETLEIWWCNNLINLVPSSASFENLTTLEVSYCQRLKNLVSSSTA---KSLVCLMKLRIDGC 174 (296)
Q Consensus 113 ~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~---~~l~~L~~L~l~~~ 174 (296)
+++|+.|+++++......+..+..+++|++|+++++ .+..++.. .+ ..+++|+.|++++|
T Consensus 111 l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~-~~~~~~~l~~L~~L~L~~N 173 (361)
T 2xot_A 111 LQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQN-QISRFPVE-LIKDGNKLPKLMLLDLSSN 173 (361)
T ss_dssp CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCSCCGG-GTC----CTTCCEEECCSS
T ss_pred CcCCCEEECCCCcccEECHHHhCCcccCCEEECCCC-cCCeeCHH-HhcCcccCCcCCEEECCCC
Confidence 455555555554322222233444555555555543 23333221 11 23455555555554
No 112
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.28 E-value=2.6e-11 Score=99.15 Aligned_cols=150 Identities=17% Similarity=0.096 Sum_probs=77.0
Q ss_pred CccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCccccccCCccccceeEecccccccccccccCcccccC
Q 022501 34 NLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGMLTQIKSLKLWELSNLLHIWEQCYKLDSVF 113 (296)
Q Consensus 34 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~ 113 (296)
.-+.++.+++....+|.. -.++|++|++++|.+.++.+ .....+++|+.|.++++. +..++... +..+
T Consensus 20 s~~~v~c~~~~l~~ip~~---~~~~L~~L~Ls~n~i~~~~~-----~~~~~l~~L~~L~L~~N~-l~~i~~~~---~~~l 87 (229)
T 3e6j_A 20 SGTTVDCRSKRHASVPAG---IPTNAQILYLHDNQITKLEP-----GVFDSLINLKELYLGSNQ-LGALPVGV---FDSL 87 (229)
T ss_dssp ETTEEECTTSCCSSCCSC---CCTTCSEEECCSSCCCCCCT-----TTTTTCTTCCEEECCSSC-CCCCCTTT---TTTC
T ss_pred eCCEeEccCCCcCccCCC---CCCCCCEEEcCCCccCccCH-----HHhhCccCCcEEECCCCC-CCCcChhh---cccC
Confidence 345566666555555542 22566666666665554422 112336666666666543 33333221 3455
Q ss_pred CCccEEEeccCccccccccC-ccccCCccEEEeccCcCccccCCcccccCCCCccEEEEeCccccceecccccccccccc
Q 022501 114 QNLETLEIWWCNNLINLVPS-SASFENLTTLEVSYCQRLKNLVSSSTAKSLVCLMKLRIDGCKLMTEIISSEGDVEEDEI 192 (296)
Q Consensus 114 ~~L~~L~l~~~~~l~~~~~~-~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 192 (296)
++|+.|+++++ .+..++.. +..+++|+.|+++++ .+..++. .+..+++|++|++++|. +..++.. .+.
T Consensus 88 ~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L~Ls~N-~l~~lp~--~~~~l~~L~~L~L~~N~-l~~~~~~------~~~ 156 (229)
T 3e6j_A 88 TQLTVLDLGTN-QLTVLPSAVFDRLVHLKELFMCCN-KLTELPR--GIERLTHLTHLALDQNQ-LKSIPHG------AFD 156 (229)
T ss_dssp TTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCSCCT--TGGGCTTCSEEECCSSC-CCCCCTT------TTT
T ss_pred CCcCEEECCCC-cCCccChhHhCcchhhCeEeccCC-cccccCc--ccccCCCCCEEECCCCc-CCccCHH------HHh
Confidence 66666666664 34444432 345666666666653 3444432 23556666666666653 3333221 123
Q ss_pred cCCccceeeccCCc
Q 022501 193 VFSRLKWLSLECLD 206 (296)
Q Consensus 193 ~~~~L~~L~l~~~~ 206 (296)
.+++|+.|++.+.+
T Consensus 157 ~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 157 RLSSLTHAYLFGNP 170 (229)
T ss_dssp TCTTCCEEECTTSC
T ss_pred CCCCCCEEEeeCCC
Confidence 35666666666544
No 113
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.27 E-value=6.8e-13 Score=117.06 Aligned_cols=218 Identities=17% Similarity=0.097 Sum_probs=140.3
Q ss_pred ccccceEEEeeccCccccc---cCCCC-----CCcCCCccEEEeccCCCCc----cChHHHhcCCcccEEEEeccccceE
Q 022501 5 VIANLEELKLSGKDITMIC---HDHLP-----KHLFQNLKSLEIVSDKSDN----FSIGFLQRFHNVERLKLRNSSYKEI 72 (296)
Q Consensus 5 ~l~~L~~L~L~~~~~~~~~---~~~~~-----~~~l~~L~~L~l~~~~~~~----~~~~~~~~l~~L~~L~l~~~~~~~~ 72 (296)
.+++|++|+++++.+..+. +..+. ...+++|++|++++|.+.. ..+..+..+++|++|++++|.+...
T Consensus 58 ~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~ 137 (386)
T 2ca6_A 58 SKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQ 137 (386)
T ss_dssp TCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHH
T ss_pred hCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHH
Confidence 4789999999986544321 11110 0278999999999998876 2234678899999999999976422
Q ss_pred eecCccccccCCc---------cccceeEecccccc-cccccccCcccccCCCccEEEeccCcccc-----ccccCcccc
Q 022501 73 FSNGEVEKQAGML---------TQIKSLKLWELSNL-LHIWEQCYKLDSVFQNLETLEIWWCNNLI-----NLVPSSASF 137 (296)
Q Consensus 73 ~~~~~~~~~~~~~---------~~L~~L~l~~~~~l-~~~~~~~~~~~~~~~~L~~L~l~~~~~l~-----~~~~~~~~l 137 (296)
.. ..+......+ ++|++|.++++..- ..++.. ...+..+++|++|.+++|..-. -.+..+..+
T Consensus 138 ~~-~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l-~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~ 215 (386)
T 2ca6_A 138 AG-AKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEW-AKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYC 215 (386)
T ss_dssp HH-HHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHH-HHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGC
T ss_pred HH-HHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHH-HHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcC
Confidence 11 1111111223 89999999987532 122110 0114567899999999984321 122266778
Q ss_pred CCccEEEeccCcCcc-----ccCCcccccCCCCccEEEEeCccccce----ecccccccccccccCCccceeeccCCcCc
Q 022501 138 ENLTTLEVSYCQRLK-----NLVSSSTAKSLVCLMKLRIDGCKLMTE----IISSEGDVEEDEIVFSRLKWLSLECLDSL 208 (296)
Q Consensus 138 ~~L~~L~l~~c~~l~-----~~~~~~~~~~l~~L~~L~l~~~~~~~~----~~~~~~~~~~~~~~~~~L~~L~l~~~~~L 208 (296)
++|+.|++++|. ++ .++ ..+..+++|++|++++|..... ++.... ...+++|+.|+++++. +
T Consensus 216 ~~L~~L~Ls~n~-l~~~g~~~l~--~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~-----~~~~~~L~~L~L~~n~-i 286 (386)
T 2ca6_A 216 QELKVLDLQDNT-FTHLGSSALA--IALKSWPNLRELGLNDCLLSARGAAAVVDAFS-----KLENIGLQTLRLQYNE-I 286 (386)
T ss_dssp TTCCEEECCSSC-CHHHHHHHHH--HHGGGCTTCCEEECTTCCCCHHHHHHHHHHHH-----TCSSCCCCEEECCSSC-C
T ss_pred CCccEEECcCCC-CCcHHHHHHH--HHHccCCCcCEEECCCCCCchhhHHHHHHHHh-----hccCCCeEEEECcCCc-C
Confidence 999999999875 42 222 2457789999999999864321 111100 0127899999999975 4
Q ss_pred ce-----ecCCCccccCCCccEEeeccCCcc
Q 022501 209 TS-----FCSGNCTFKFPSLEDLFVIDCPKM 234 (296)
Q Consensus 209 ~~-----l~~~~~~~~~~~L~~L~l~~c~~l 234 (296)
+. ++. ....++++|++|++++|+.-
T Consensus 287 ~~~g~~~l~~-~l~~~l~~L~~L~l~~N~l~ 316 (386)
T 2ca6_A 287 ELDAVRTLKT-VIDEKMPDLLFLELNGNRFS 316 (386)
T ss_dssp BHHHHHHHHH-HHHHHCTTCCEEECTTSBSC
T ss_pred CHHHHHHHHH-HHHhcCCCceEEEccCCcCC
Confidence 54 332 11245899999999998633
No 114
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.26 E-value=6e-11 Score=109.40 Aligned_cols=190 Identities=15% Similarity=0.085 Sum_probs=130.3
Q ss_pred cceEEEeeccCccccccCCCCCCcCCCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCccccccCCccc
Q 022501 8 NLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGMLTQ 87 (296)
Q Consensus 8 ~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 87 (296)
+|++|+++++++++++ .. .+++|+.|++++|.+..+| ..+++|++|++++|.+..+.. + ..+
T Consensus 60 ~L~~L~Ls~n~L~~lp-~~----l~~~L~~L~Ls~N~l~~ip----~~l~~L~~L~Ls~N~l~~ip~---l------~~~ 121 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLP-DN----LPPQITVLEITQNALISLP----ELPASLEYLDACDNRLSTLPE---L------PAS 121 (571)
T ss_dssp TCSEEECCSSCCSCCC-SC----CCTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCSCCCC---C------CTT
T ss_pred CccEEEeCCCCCCccC-Hh----HcCCCCEEECcCCCCcccc----cccCCCCEEEccCCCCCCcch---h------hcC
Confidence 8899999998888864 22 3578999999999888888 457899999999998776432 1 128
Q ss_pred cceeEecccccccccccccCcccccCCCccEEEeccCccccccccCccccCCccEEEeccCcCccccCCcccccCCCCcc
Q 022501 88 IKSLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCNNLINLVPSSASFENLTTLEVSYCQRLKNLVSSSTAKSLVCLM 167 (296)
Q Consensus 88 L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~ 167 (296)
|+.|.++++. +..++. .+++|+.|+++++ .++.++. .+++|+.|+++++. ++.++. +. ++|+
T Consensus 122 L~~L~Ls~N~-l~~lp~-------~l~~L~~L~Ls~N-~l~~lp~---~l~~L~~L~Ls~N~-L~~lp~---l~--~~L~ 183 (571)
T 3cvr_A 122 LKHLDVDNNQ-LTMLPE-------LPALLEYINADNN-QLTMLPE---LPTSLEVLSVRNNQ-LTFLPE---LP--ESLE 183 (571)
T ss_dssp CCEEECCSSC-CSCCCC-------CCTTCCEEECCSS-CCSCCCC---CCTTCCEEECCSSC-CSCCCC---CC--TTCC
T ss_pred CCEEECCCCc-CCCCCC-------cCccccEEeCCCC-ccCcCCC---cCCCcCEEECCCCC-CCCcch---hh--CCCC
Confidence 9999998764 344432 4678999999886 4555665 47889999998764 555543 22 8899
Q ss_pred EEEEeCccccceecccccccccccccCCccceeeccCCcCcceecCCCccccCCCccEEeeccCCccccccCC
Q 022501 168 KLRIDGCKLMTEIISSEGDVEEDEIVFSRLKWLSLECLDSLTSFCSGNCTFKFPSLEDLFVIDCPKMMIFSFG 240 (296)
Q Consensus 168 ~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~L~~L~l~~c~~l~~~~~~ 240 (296)
.|++++|. ++.++. ... ......+.|+.|+++++ .++.++.. ...+++|+.|++++++.-..+|..
T Consensus 184 ~L~Ls~N~-L~~lp~-~~~--~L~~~~~~L~~L~Ls~N-~l~~lp~~--l~~l~~L~~L~L~~N~l~~~~p~~ 249 (571)
T 3cvr_A 184 ALDVSTNL-LESLPA-VPV--RNHHSEETEIFFRCREN-RITHIPEN--ILSLDPTCTIILEDNPLSSRIRES 249 (571)
T ss_dssp EEECCSSC-CSSCCC-CC----------CCEEEECCSS-CCCCCCGG--GGGSCTTEEEECCSSSCCHHHHHH
T ss_pred EEECcCCC-CCchhh-HHH--hhhcccccceEEecCCC-cceecCHH--HhcCCCCCEEEeeCCcCCCcCHHH
Confidence 99999874 444443 110 00111223388999886 46776653 356888999999888655555543
No 115
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.24 E-value=4.7e-13 Score=117.16 Aligned_cols=218 Identities=16% Similarity=0.037 Sum_probs=134.4
Q ss_pred cc-cceEEEeeccCccccccCCCCC--Cc-CCCccEEEeccCCCCccChHHH----hcC-CcccEEEEeccccceEeecC
Q 022501 6 IA-NLEELKLSGKDITMICHDHLPK--HL-FQNLKSLEIVSDKSDNFSIGFL----QRF-HNVERLKLRNSSYKEIFSNG 76 (296)
Q Consensus 6 l~-~L~~L~L~~~~~~~~~~~~~~~--~~-l~~L~~L~l~~~~~~~~~~~~~----~~l-~~L~~L~l~~~~~~~~~~~~ 76 (296)
++ +|++|++++|.+.+..+..+.. .. +++|++|++++|.+...+...+ ..+ ++|++|++++|.+..... .
T Consensus 49 ~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~-~ 127 (362)
T 3goz_A 49 TPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSS-S 127 (362)
T ss_dssp CCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCH-H
T ss_pred CCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHH-H
Confidence 55 8999999999988765444441 01 3999999999999886665533 344 899999999997755422 1
Q ss_pred ccccccCC-ccccceeEeccccccccccccc-CcccccCC-CccEEEeccCcccccccc-----Ccccc-CCccEEEecc
Q 022501 77 EVEKQAGM-LTQIKSLKLWELSNLLHIWEQC-YKLDSVFQ-NLETLEIWWCNNLINLVP-----SSASF-ENLTTLEVSY 147 (296)
Q Consensus 77 ~~~~~~~~-~~~L~~L~l~~~~~l~~~~~~~-~~~~~~~~-~L~~L~l~~~~~l~~~~~-----~~~~l-~~L~~L~l~~ 147 (296)
.+...... .++|++|+++++.- ....... ...+..++ +|++|++++|. ++.... .+..+ ++|++|++++
T Consensus 128 ~l~~~l~~~~~~L~~L~Ls~N~l-~~~~~~~l~~~l~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~ 205 (362)
T 3goz_A 128 EFKQAFSNLPASITSLNLRGNDL-GIKSSDELIQILAAIPANVNSLNLRGNN-LASKNCAELAKFLASIPASVTSLDLSA 205 (362)
T ss_dssp HHHHHHTTSCTTCCEEECTTSCG-GGSCHHHHHHHHHTSCTTCCEEECTTSC-GGGSCHHHHHHHHHTSCTTCCEEECTT
T ss_pred HHHHHHHhCCCceeEEEccCCcC-CHHHHHHHHHHHhcCCccccEeeecCCC-CchhhHHHHHHHHHhCCCCCCEEECCC
Confidence 11111222 36999999998743 2111100 00123344 89999999974 433322 22334 5999999998
Q ss_pred CcCccccCCc---ccccC-CCCccEEEEeCccccceecccccccccccccCCccceeeccCCc--C-----cceecCCCc
Q 022501 148 CQRLKNLVSS---STAKS-LVCLMKLRIDGCKLMTEIISSEGDVEEDEIVFSRLKWLSLECLD--S-----LTSFCSGNC 216 (296)
Q Consensus 148 c~~l~~~~~~---~~~~~-l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~--~-----L~~l~~~~~ 216 (296)
|. +++.... ..+.. .++|++|++++|..-....... ......+++|++|+++++. . +..+.. .
T Consensus 206 N~-i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l---~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~--~ 279 (362)
T 3goz_A 206 NL-LGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENL---KLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGA--A 279 (362)
T ss_dssp SC-GGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHH---HHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHT--T
T ss_pred CC-CChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHH---HHHHhcCCCccEEEeccCCccccCHHHHHHHHH--H
Confidence 75 5542111 11222 4689999999985322111000 0123447899999999875 1 222222 2
Q ss_pred cccCCCccEEeeccCC
Q 022501 217 TFKFPSLEDLFVIDCP 232 (296)
Q Consensus 217 ~~~~~~L~~L~l~~c~ 232 (296)
...+++|+.|++++++
T Consensus 280 ~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 280 FPNIQKIILVDKNGKE 295 (362)
T ss_dssp STTCCEEEEECTTSCB
T ss_pred hccCCceEEEecCCCc
Confidence 3467889999998875
No 116
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.24 E-value=4.6e-11 Score=104.44 Aligned_cols=159 Identities=16% Similarity=0.133 Sum_probs=118.9
Q ss_pred cccceEEEeeccCccccccCCCCCCcCCCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCccccccCCc
Q 022501 6 IANLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGML 85 (296)
Q Consensus 6 l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 85 (296)
.+.++.|+|++|+++.+.+..+.. .+++|+.|++++|.+..++...+..+++|++|++++|.+..+.+. ....+
T Consensus 38 ~~~l~~L~Ls~N~l~~l~~~~~~~-~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~-----~~~~l 111 (361)
T 2xot_A 38 PSYTALLDLSHNNLSRLRAEWTPT-RLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEF-----LFSDL 111 (361)
T ss_dssp CTTCSEEECCSSCCCEECTTSSSS-CCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTT-----TTTTC
T ss_pred CCCCCEEECCCCCCCccChhhhhh-cccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHH-----HhCCC
Confidence 456899999999999986555431 689999999999999988887889999999999999988776431 22458
Q ss_pred cccceeEecccccccccccccCcccccCCCccEEEeccCccccccccCc----cccCCccEEEeccCcCccccCCccccc
Q 022501 86 TQIKSLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCNNLINLVPSS----ASFENLTTLEVSYCQRLKNLVSSSTAK 161 (296)
Q Consensus 86 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~----~~l~~L~~L~l~~c~~l~~~~~~~~~~ 161 (296)
++|+.|.++++.. ..+.... +..+++|+.|+++++ .+..++... ..+++|+.|+++++ .+..++.. .+.
T Consensus 112 ~~L~~L~L~~N~i-~~~~~~~---~~~l~~L~~L~L~~N-~l~~l~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~-~~~ 184 (361)
T 2xot_A 112 QALEVLLLYNNHI-VVVDRNA---FEDMAQLQKLYLSQN-QISRFPVELIKDGNKLPKLMLLDLSSN-KLKKLPLT-DLQ 184 (361)
T ss_dssp TTCCEEECCSSCC-CEECTTT---TTTCTTCCEEECCSS-CCCSCCGGGTC----CTTCCEEECCSS-CCCCCCHH-HHH
T ss_pred cCCCEEECCCCcc-cEECHHH---hCCcccCCEEECCCC-cCCeeCHHHhcCcccCCcCCEEECCCC-CCCccCHH-Hhh
Confidence 9999999998653 3432221 677899999999986 566666543 46899999999975 46655432 345
Q ss_pred CCCC--ccEEEEeCcccc
Q 022501 162 SLVC--LMKLRIDGCKLM 177 (296)
Q Consensus 162 ~l~~--L~~L~l~~~~~~ 177 (296)
.++. ++.|++.+++..
T Consensus 185 ~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 185 KLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp HSCHHHHTTEECCSSCEE
T ss_pred hccHhhcceEEecCCCcc
Confidence 5665 488999887643
No 117
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.24 E-value=1.1e-10 Score=107.73 Aligned_cols=176 Identities=13% Similarity=0.002 Sum_probs=133.0
Q ss_pred CccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCccccccCCccccceeEecccccccccccccCcccccC
Q 022501 34 NLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGMLTQIKSLKLWELSNLLHIWEQCYKLDSVF 113 (296)
Q Consensus 34 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~ 113 (296)
+|+.|++++|.+..+|..+ +++|++|++++|.+..+. ..+++|+.|.++++. +..++. +.
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l---~~~L~~L~Ls~N~l~~ip---------~~l~~L~~L~Ls~N~-l~~ip~-----l~-- 119 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNL---PPQITVLEITQNALISLP---------ELPASLEYLDACDNR-LSTLPE-----LP-- 119 (571)
T ss_dssp TCSEEECCSSCCSCCCSCC---CTTCSEEECCSSCCSCCC---------CCCTTCCEEECCSSC-CSCCCC-----CC--
T ss_pred CccEEEeCCCCCCccCHhH---cCCCCEEECcCCCCcccc---------cccCCCCEEEccCCC-CCCcch-----hh--
Confidence 8999999999888888643 488999999999887542 237899999999873 444543 11
Q ss_pred CCccEEEeccCccccccccCccccCCccEEEeccCcCccccCCcccccCCCCccEEEEeCccccceeccccccccccccc
Q 022501 114 QNLETLEIWWCNNLINLVPSSASFENLTTLEVSYCQRLKNLVSSSTAKSLVCLMKLRIDGCKLMTEIISSEGDVEEDEIV 193 (296)
Q Consensus 114 ~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 193 (296)
.+|+.|+++++ .+..+|. .+++|+.|+++++. ++.++. .+++|++|++++|. ++.++. -
T Consensus 120 ~~L~~L~Ls~N-~l~~lp~---~l~~L~~L~Ls~N~-l~~lp~-----~l~~L~~L~Ls~N~-L~~lp~---l------- 178 (571)
T 3cvr_A 120 ASLKHLDVDNN-QLTMLPE---LPALLEYINADNNQ-LTMLPE-----LPTSLEVLSVRNNQ-LTFLPE---L------- 178 (571)
T ss_dssp TTCCEEECCSS-CCSCCCC---CCTTCCEEECCSSC-CSCCCC-----CCTTCCEEECCSSC-CSCCCC---C-------
T ss_pred cCCCEEECCCC-cCCCCCC---cCccccEEeCCCCc-cCcCCC-----cCCCcCEEECCCCC-CCCcch---h-------
Confidence 28999999986 5566766 58999999999864 555542 57899999999986 333333 1
Q ss_pred CCccceeeccCCcCcceecCCCccccCCCc-------cEEeeccCCccccccCCcccCCCcceEEcccCCc
Q 022501 194 FSRLKWLSLECLDSLTSFCSGNCTFKFPSL-------EDLFVIDCPKMMIFSFGVLSTPRLREVRKNWGLD 257 (296)
Q Consensus 194 ~~~L~~L~l~~~~~L~~l~~~~~~~~~~~L-------~~L~l~~c~~l~~~~~~~~~~~~L~~l~l~~~~~ 257 (296)
.++|+.|+++++ +++.++. . . .+| +.|++++| .++.+|..+..+++|+.|+++.+..
T Consensus 179 ~~~L~~L~Ls~N-~L~~lp~-~--~--~~L~~~~~~L~~L~Ls~N-~l~~lp~~l~~l~~L~~L~L~~N~l 242 (571)
T 3cvr_A 179 PESLEALDVSTN-LLESLPA-V--P--VRNHHSEETEIFFRCREN-RITHIPENILSLDPTCTIILEDNPL 242 (571)
T ss_dssp CTTCCEEECCSS-CCSSCCC-C--C----------CCEEEECCSS-CCCCCCGGGGGSCTTEEEECCSSSC
T ss_pred hCCCCEEECcCC-CCCchhh-H--H--HhhhcccccceEEecCCC-cceecCHHHhcCCCCCEEEeeCCcC
Confidence 279999999987 4676655 1 1 256 99999997 6888999888899999999986543
No 118
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.21 E-value=1.7e-11 Score=95.22 Aligned_cols=132 Identities=22% Similarity=0.171 Sum_probs=80.8
Q ss_pred cCCCccEEEeccCCCC--ccChHHHhcCCcccEEEEeccccceEeecCccccccCCccccceeEecccccccccccccCc
Q 022501 31 LFQNLKSLEIVSDKSD--NFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGMLTQIKSLKLWELSNLLHIWEQCYK 108 (296)
Q Consensus 31 ~l~~L~~L~l~~~~~~--~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~ 108 (296)
..++|+.|++++|.+. .+|. .+..+++|++|++.+|.+..+ .....+++|++|.++++.....++..
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~-~~~~l~~L~~L~l~~n~l~~~-------~~~~~l~~L~~L~Ls~N~l~~~~~~~--- 90 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEG-LTAEFVNLEFLSLINVGLISV-------SNLPKLPKLKKLELSENRIFGGLDML--- 90 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSS-CCGGGGGCCEEEEESSCCCCC-------SSCCCCSSCCEEEEESCCCCSCCCHH---
T ss_pred CcccCCEEECCCCCCChhhHHH-HHHhCCCCCEEeCcCCCCCCh-------hhhccCCCCCEEECcCCcCchHHHHH---
Confidence 3466777777666665 5553 345667777777777755544 12234667777777765432223222
Q ss_pred ccccCCCccEEEeccCccccccc--cCccccCCccEEEeccCcCccccCC--cccccCCCCccEEEEeCccc
Q 022501 109 LDSVFQNLETLEIWWCNNLINLV--PSSASFENLTTLEVSYCQRLKNLVS--SSTAKSLVCLMKLRIDGCKL 176 (296)
Q Consensus 109 ~~~~~~~L~~L~l~~~~~l~~~~--~~~~~l~~L~~L~l~~c~~l~~~~~--~~~~~~l~~L~~L~l~~~~~ 176 (296)
...+++|+.|+++++ .+..++ ..+..+++|+.|+++++. ++..+. ...+..+++|++|++.+|..
T Consensus 91 -~~~l~~L~~L~Ls~N-~l~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~~n~~ 159 (168)
T 2ell_A 91 -AEKLPNLTHLNLSGN-KLKDISTLEPLKKLECLKSLDLFNCE-VTNLNDYRESVFKLLPQLTYLDGYDRED 159 (168)
T ss_dssp -HHHCTTCCEEECBSS-SCCSSGGGGGGSSCSCCCEEECCSSG-GGTSTTHHHHHHTTCSSCCEETTEETTS
T ss_pred -HhhCCCCCEEeccCC-ccCcchhHHHHhcCCCCCEEEeeCCc-CcchHHHHHHHHHhCccCcEecCCCCCh
Confidence 344777888888776 455544 455667888888888763 444443 11456788888888888753
No 119
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.17 E-value=1.5e-13 Score=127.13 Aligned_cols=203 Identities=16% Similarity=0.078 Sum_probs=130.9
Q ss_pred cCCCccEEEeccCCCCccChHHHhcCCcccEEEEecccc-ceEe-------ecCccccccCCccccceeEeccccccccc
Q 022501 31 LFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSY-KEIF-------SNGEVEKQAGMLTQIKSLKLWELSNLLHI 102 (296)
Q Consensus 31 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~-~~~~-------~~~~~~~~~~~~~~L~~L~l~~~~~l~~~ 102 (296)
.+++|+.|++++|.+..+|. .++++++|++|++.++.. .... .....+...+.+++|+.|.......+..+
T Consensus 347 ~~~~L~~L~Ls~n~L~~Lp~-~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L 425 (567)
T 1dce_A 347 TDEQLFRCELSVEKSTVLQS-ELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDL 425 (567)
T ss_dssp TTTTSSSCCCCHHHHHHHHH-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred cCccceeccCChhhHHhhHH-HHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchh
Confidence 57888889998888777764 567888888888755420 0000 01112223345677777762111111111
Q ss_pred c---cccCcccc--cCCCccEEEeccCccccccccCccccCCccEEEeccCcCccccCCcccccCCCCccEEEEeCcccc
Q 022501 103 W---EQCYKLDS--VFQNLETLEIWWCNNLINLVPSSASFENLTTLEVSYCQRLKNLVSSSTAKSLVCLMKLRIDGCKLM 177 (296)
Q Consensus 103 ~---~~~~~~~~--~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~~ 177 (296)
. ..... +. ....|+.|+++++ .+..+|. +..+++|+.|+++++ .++.++. .+..+++|+.|++++|. +
T Consensus 426 ~~l~l~~n~-i~~l~~~~L~~L~Ls~n-~l~~lp~-~~~l~~L~~L~Ls~N-~l~~lp~--~~~~l~~L~~L~Ls~N~-l 498 (567)
T 1dce_A 426 RSKFLLENS-VLKMEYADVRVLHLAHK-DLTVLCH-LEQLLLVTHLDLSHN-RLRALPP--ALAALRCLEVLQASDNA-L 498 (567)
T ss_dssp HHHHHHHHH-HHHHHHTTCSEEECTTS-CCSSCCC-GGGGTTCCEEECCSS-CCCCCCG--GGGGCTTCCEEECCSSC-C
T ss_pred hhhhhhccc-ccccCccCceEEEecCC-CCCCCcC-ccccccCcEeecCcc-cccccch--hhhcCCCCCEEECCCCC-C
Confidence 1 00000 11 1235899999986 5666775 788999999999986 4665542 57889999999999975 4
Q ss_pred ceecccccccccccccCCccceeeccCCcCcceec-CCCccccCCCccEEeeccCCccccccCCcc----cCCCcceEEc
Q 022501 178 TEIISSEGDVEEDEIVFSRLKWLSLECLDSLTSFC-SGNCTFKFPSLEDLFVIDCPKMMIFSFGVL----STPRLREVRK 252 (296)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~-~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~----~~~~L~~l~l 252 (296)
+.++ . +..+++|+.|+++++ +++.+. +. .+..+++|+.|++++++ ++.+|.... .+|+|+.|++
T Consensus 499 ~~lp-~-------l~~l~~L~~L~Ls~N-~l~~~~~p~-~l~~l~~L~~L~L~~N~-l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 499 ENVD-G-------VANLPRLQELLLCNN-RLQQSAAIQ-PLVSCPRLVLLNLQGNS-LCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp CCCG-G-------GTTCSSCCEEECCSS-CCCSSSTTG-GGGGCTTCCEEECTTSG-GGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCc-c-------cCCCCCCcEEECCCC-CCCCCCCcH-HHhcCCCCCEEEecCCc-CCCCccHHHHHHHHCcccCccCC
Confidence 4454 2 333899999999986 467763 22 35789999999999975 666655432 3688888853
No 120
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.16 E-value=1.5e-11 Score=93.44 Aligned_cols=62 Identities=15% Similarity=0.256 Sum_probs=37.6
Q ss_pred ccccceEEEeeccCcc--ccccCCCCCCcCCCccEEEeccCCCCccChHHHhcCCcccEEEEeccccce
Q 022501 5 VIANLEELKLSGKDIT--MICHDHLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKE 71 (296)
Q Consensus 5 ~l~~L~~L~L~~~~~~--~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 71 (296)
..++|++|+++++.+. .+ +..+. .+++|+.|++++|.+..+ ..+..+++|++|++++|.+..
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~-~~~~~--~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~ 78 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKL-EGLTD--EFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSG 78 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBC-CSCCT--TCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCS
T ss_pred CCccCeEEEccCCcCChhHH-HHHHh--hcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccc
Confidence 3566777777776665 33 33344 567777777766666555 245566666666666665443
No 121
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.15 E-value=2.2e-10 Score=88.82 Aligned_cols=130 Identities=18% Similarity=0.129 Sum_probs=75.7
Q ss_pred CCCccEEEeccCccc-cccccCccccCCccEEEeccCcCccccCCcccccCCCCccEEEEeCccccceeccccccccccc
Q 022501 113 FQNLETLEIWWCNNL-INLVPSSASFENLTTLEVSYCQRLKNLVSSSTAKSLVCLMKLRIDGCKLMTEIISSEGDVEEDE 191 (296)
Q Consensus 113 ~~~L~~L~l~~~~~l-~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 191 (296)
+++|+.|++++|... ..++..+..+++|+.|++++|. ++.. ..+..+++|++|++++|.....++.. .
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~-l~~~---~~~~~l~~L~~L~Ls~N~l~~~~~~~-------~ 91 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG-LISV---SNLPKLPKLKKLELSENRIFGGLDML-------A 91 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSC-CCCC---SSCCCCSSCCEEEEESCCCCSCCCHH-------H
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCC-CCCh---hhhccCCCCCEEECcCCcCchHHHHH-------H
Confidence 356677777665422 2555555666777777776654 4443 23456677777777776533222221 1
Q ss_pred ccCCccceeeccCCcCcceecCCCccccCCCccEEeeccCCccccccC----CcccCCCcceEEcccC
Q 022501 192 IVFSRLKWLSLECLDSLTSFCSGNCTFKFPSLEDLFVIDCPKMMIFSF----GVLSTPRLREVRKNWG 255 (296)
Q Consensus 192 ~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~L~~L~l~~c~~l~~~~~----~~~~~~~L~~l~l~~~ 255 (296)
..+++|+.|+++++ .++.++....+..+++|+.|++++|+ +..+|. .+..+++|+.+++..+
T Consensus 92 ~~l~~L~~L~Ls~N-~l~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~~n 157 (168)
T 2ell_A 92 EKLPNLTHLNLSGN-KLKDISTLEPLKKLECLKSLDLFNCE-VTNLNDYRESVFKLLPQLTYLDGYDR 157 (168)
T ss_dssp HHCTTCCEEECBSS-SCCSSGGGGGGSSCSCCCEEECCSSG-GGTSTTHHHHHHTTCSSCCEETTEET
T ss_pred hhCCCCCEEeccCC-ccCcchhHHHHhcCCCCCEEEeeCCc-CcchHHHHHHHHHhCccCcEecCCCC
Confidence 22677777777766 35555422234567777777777763 555554 4456777777777543
No 122
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.04 E-value=2.7e-10 Score=86.49 Aligned_cols=128 Identities=16% Similarity=0.123 Sum_probs=77.5
Q ss_pred CCCccEEEeccCccc-cccccCccccCCccEEEeccCcCccccCCcccccCCCCccEEEEeCccccceeccccccccccc
Q 022501 113 FQNLETLEIWWCNNL-INLVPSSASFENLTTLEVSYCQRLKNLVSSSTAKSLVCLMKLRIDGCKLMTEIISSEGDVEEDE 191 (296)
Q Consensus 113 ~~~L~~L~l~~~~~l-~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 191 (296)
+++|+.|++++|... +.++..+..+++|+.|++++| .++.. ..+..+++|++|++++|.....++...
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~---~~~~~l~~L~~L~Ls~n~i~~~~~~~~------- 84 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINV-GLTSI---ANLPKLNKLKKLELSDNRVSGGLEVLA------- 84 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTS-CCCCC---TTCCCCTTCCEEECCSSCCCSCTHHHH-------
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCC-CCCCc---hhhhcCCCCCEEECCCCcccchHHHHh-------
Confidence 355677777666433 255555566677777777765 34443 235667777777777765332232221
Q ss_pred ccCCccceeeccCCcCcceecCCCccccCCCccEEeeccCCccccccC----CcccCCCcceEEcc
Q 022501 192 IVFSRLKWLSLECLDSLTSFCSGNCTFKFPSLEDLFVIDCPKMMIFSF----GVLSTPRLREVRKN 253 (296)
Q Consensus 192 ~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~L~~L~l~~c~~l~~~~~----~~~~~~~L~~l~l~ 253 (296)
..+++|++|+++++. ++.++....+..+++|++|++++| .++.++. .+..+++|+.++++
T Consensus 85 ~~l~~L~~L~ls~N~-i~~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 85 EKCPNLTHLNLSGNK-IKDLSTIEPLKKLENLKSLDLFNC-EVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp HHCTTCCEEECTTSC-CCSHHHHGGGGGCTTCCEEECTTC-GGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred hhCCCCCEEECCCCc-CCChHHHHHHhhCCCCCEEeCcCC-cccchHHHHHHHHHHCCCcccccCC
Confidence 227778888887764 555432123467788888888887 4556554 45567888888764
No 123
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.02 E-value=2.9e-10 Score=88.88 Aligned_cols=132 Identities=16% Similarity=0.123 Sum_probs=79.7
Q ss_pred cCCCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCccccccCCccccceeEecccccccccccccCccc
Q 022501 31 LFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGMLTQIKSLKLWELSNLLHIWEQCYKLD 110 (296)
Q Consensus 31 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~ 110 (296)
.+++|+.|++++|.+..++. +....++|++|++++|.+..+. ....+++|+.|.++++. +..++... +
T Consensus 17 ~~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~l~~~~-------~l~~l~~L~~L~Ls~N~-l~~~~~~~---~ 84 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRKLD-------GFPLLRRLKTLLVNNNR-ICRIGEGL---D 84 (176)
T ss_dssp CTTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSCCCEEC-------CCCCCSSCCEEECCSSC-CCEECSCH---H
T ss_pred CcCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCCCCCccc-------ccccCCCCCEEECCCCc-ccccCcch---h
Confidence 45677777777776665542 2233347777777777666541 12336777777777653 33443220 2
Q ss_pred ccCCCccEEEeccCcccccccc--CccccCCccEEEeccCcCccccCCc--ccccCCCCccEEEEeCccc
Q 022501 111 SVFQNLETLEIWWCNNLINLVP--SSASFENLTTLEVSYCQRLKNLVSS--STAKSLVCLMKLRIDGCKL 176 (296)
Q Consensus 111 ~~~~~L~~L~l~~~~~l~~~~~--~~~~l~~L~~L~l~~c~~l~~~~~~--~~~~~l~~L~~L~l~~~~~ 176 (296)
..+++|+.|+++++ .++.++. .+..+++|+.|++++++ +...+.. ..+..+++|+.|+++++..
T Consensus 85 ~~l~~L~~L~L~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 85 QALPDLTELILTNN-SLVELGDLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp HHCTTCCEEECCSC-CCCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred hcCCCCCEEECCCC-cCCcchhhHhhhcCCCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeCCCcCCH
Confidence 55677888888775 4455554 55667788888887754 3333321 0256778888888877654
No 124
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.02 E-value=1.3e-09 Score=86.42 Aligned_cols=125 Identities=16% Similarity=0.178 Sum_probs=71.5
Q ss_pred eEEEeeccCccccccCCCCCCcCCCccEEEeccCCCCccChH-HHhcCCcccEEEEeccccceEeecCccccccCCcccc
Q 022501 10 EELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSDNFSIG-FLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGMLTQI 88 (296)
Q Consensus 10 ~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L 88 (296)
+++++++++++.++ .. ..++|+.|++++|.+..++.. .+..+++|++|++++|.+.++.+ .....+++|
T Consensus 11 ~~l~~s~~~l~~ip-~~----~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-----~~~~~l~~L 80 (192)
T 1w8a_A 11 TTVDCTGRGLKEIP-RD----IPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEP-----NAFEGASHI 80 (192)
T ss_dssp TEEECTTSCCSSCC-SC----CCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCT-----TTTTTCTTC
T ss_pred CEEEcCCCCcCcCc-cC----CCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCH-----hHcCCcccC
Confidence 57778887777763 22 234788888888887766653 46788888888888886655432 112335666
Q ss_pred ceeEecccccccccccccCcccccCCCccEEEeccCccccccccCccccCCccEEEeccC
Q 022501 89 KSLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCNNLINLVPSSASFENLTTLEVSYC 148 (296)
Q Consensus 89 ~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c 148 (296)
++|.+++.. +..++... +..+++|+.|+++++......+..+..+++|++|+++++
T Consensus 81 ~~L~Ls~N~-l~~~~~~~---~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 136 (192)
T 1w8a_A 81 QELQLGENK-IKEISNKM---FLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136 (192)
T ss_dssp CEEECCSCC-CCEECSSS---STTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTC
T ss_pred CEEECCCCc-CCccCHHH---hcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCC
Confidence 666666543 22222111 334555666666554322222334444555555555543
No 125
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.98 E-value=1.8e-09 Score=85.62 Aligned_cols=110 Identities=18% Similarity=0.169 Sum_probs=88.2
Q ss_pred cccceEEEeeccCccccccC-CCCCCcCCCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCccccccCC
Q 022501 6 IANLEELKLSGKDITMICHD-HLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGM 84 (296)
Q Consensus 6 l~~L~~L~L~~~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 84 (296)
.++|++|++++|.++.+.+. .+. .+++|++|++++|.+..+++..+.++++|++|++++|.+..+.+. ....
T Consensus 28 ~~~l~~L~l~~n~i~~~~~~~~~~--~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-----~~~~ 100 (192)
T 1w8a_A 28 PLHTTELLLNDNELGRISSDGLFG--RLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNK-----MFLG 100 (192)
T ss_dssp CTTCSEEECCSCCCCSBCCSCSGG--GCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSS-----SSTT
T ss_pred CCCCCEEECCCCcCCccCCccccc--cCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHH-----HhcC
Confidence 45899999999999988653 366 899999999999999988777889999999999999998887541 1245
Q ss_pred ccccceeEecccccccccccccCcccccCCCccEEEeccCcc
Q 022501 85 LTQIKSLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCNN 126 (296)
Q Consensus 85 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~ 126 (296)
+++|++|.+++.......+.. +..+++|+.|++++++.
T Consensus 101 l~~L~~L~L~~N~l~~~~~~~----~~~l~~L~~L~L~~N~l 138 (192)
T 1w8a_A 101 LHQLKTLNLYDNQISCVMPGS----FEHLNSLTSLNLASNPF 138 (192)
T ss_dssp CTTCCEEECCSSCCCEECTTS----STTCTTCCEEECTTCCB
T ss_pred CCCCCEEECCCCcCCeeCHHH----hhcCCCCCEEEeCCCCc
Confidence 899999999986543222333 66789999999998643
No 126
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.97 E-value=1.8e-09 Score=84.32 Aligned_cols=126 Identities=16% Similarity=0.168 Sum_probs=94.0
Q ss_pred ceEEEeeccCccccccCCCCCCcCCCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCccccccCCcccc
Q 022501 9 LEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGMLTQI 88 (296)
Q Consensus 9 L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L 88 (296)
.+.++++++++..++ .. ..++|+.|++++|.+..++...+..+++|++|++++|.+..+.+ .....+++|
T Consensus 9 ~~~l~~~~~~l~~~p---~~--~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-----~~~~~l~~L 78 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVP---TG--IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPD-----GVFDKLTKL 78 (177)
T ss_dssp TTEEECCSSCCSSCC---TT--CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCT-----TTTTTCTTC
T ss_pred CCEEEecCCCCccCC---CC--CCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeCh-----hHccCCCcc
Confidence 467788888877764 22 45789999999998888887778889999999999997765532 112458899
Q ss_pred ceeEecccccccccccccCcccccCCCccEEEeccCccccccccC-ccccCCccEEEeccCc
Q 022501 89 KSLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCNNLINLVPS-SASFENLTTLEVSYCQ 149 (296)
Q Consensus 89 ~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~l~~L~~L~l~~c~ 149 (296)
+.|.++++. +..++... +..+++|+.|+++++ .+..++.. +..+++|++|++++++
T Consensus 79 ~~L~l~~N~-l~~~~~~~---~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 79 TILYLHENK-LQSLPNGV---FDKLTQLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp CEEECCSSC-CCCCCTTT---TTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEECCCCC-ccccCHHH---hhCCcccCEEECcCC-cceEeCHHHhcCCcccCEEEecCCC
Confidence 999998764 44443321 466889999999986 55666664 4668999999999865
No 127
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.96 E-value=3.7e-09 Score=82.58 Aligned_cols=129 Identities=16% Similarity=0.131 Sum_probs=89.0
Q ss_pred CccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCccccccCCccccceeEecccccccccccccCcccccC
Q 022501 34 NLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGMLTQIKSLKLWELSNLLHIWEQCYKLDSVF 113 (296)
Q Consensus 34 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~ 113 (296)
..+.+++.++....+|.. -.++|++|++.+|.+.++.+ .....+++|++|.++++. +..++... +..+
T Consensus 8 ~~~~l~~~~~~l~~~p~~---~~~~l~~L~l~~n~l~~~~~-----~~~~~l~~L~~L~l~~n~-l~~~~~~~---~~~l 75 (177)
T 2o6r_A 8 SGTEIRCNSKGLTSVPTG---IPSSATRLELESNKLQSLPH-----GVFDKLTQLTKLSLSQNQ-IQSLPDGV---FDKL 75 (177)
T ss_dssp ETTEEECCSSCCSSCCTT---CCTTCSEEECCSSCCCCCCT-----TTTTTCTTCSEEECCSSC-CCCCCTTT---TTTC
T ss_pred CCCEEEecCCCCccCCCC---CCCCCcEEEeCCCcccEeCH-----HHhcCcccccEEECCCCc-ceEeChhH---ccCC
Confidence 456788888877777742 34788999999887765432 112458899999998763 44443321 4568
Q ss_pred CCccEEEeccCccccccccC-ccccCCccEEEeccCcCccccCCcccccCCCCccEEEEeCcccc
Q 022501 114 QNLETLEIWWCNNLINLVPS-SASFENLTTLEVSYCQRLKNLVSSSTAKSLVCLMKLRIDGCKLM 177 (296)
Q Consensus 114 ~~L~~L~l~~~~~l~~~~~~-~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~~ 177 (296)
++|+.|+++++ .++.++.. +..+++|++|+++++ .++.++.. .+..+++|++|++++|+..
T Consensus 76 ~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~-~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 76 TKLTILYLHEN-KLQSLPNGVFDKLTQLKELALDTN-QLKSVPDG-IFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp TTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTT-TTTTCTTCCEEECCSSCBC
T ss_pred CccCEEECCCC-CccccCHHHhhCCcccCEEECcCC-cceEeCHH-HhcCCcccCEEEecCCCee
Confidence 88999999886 45555553 567889999999875 45555432 3567888999999887643
No 128
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.94 E-value=5.5e-09 Score=82.91 Aligned_cols=122 Identities=13% Similarity=0.136 Sum_probs=67.5
Q ss_pred eEEEeeccCccccccCCCCCCcCCCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCccccccCCccccc
Q 022501 10 EELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGMLTQIK 89 (296)
Q Consensus 10 ~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~ 89 (296)
+++++++++++.++ .. ..++|+.|++++|.+..+| ..+..+++|++|++++|.+..+.+ .....+++|+
T Consensus 13 ~~l~~~~~~l~~ip-~~----~~~~l~~L~L~~n~i~~ip-~~~~~l~~L~~L~Ls~N~i~~i~~-----~~f~~l~~L~ 81 (193)
T 2wfh_A 13 TVVRCSNKGLKVLP-KG----IPRDVTELYLDGNQFTLVP-KELSNYKHLTLIDLSNNRISTLSN-----QSFSNMTQLL 81 (193)
T ss_dssp TEEECTTSCCSSCC-SC----CCTTCCEEECCSSCCCSCC-GGGGGCTTCCEEECCSSCCCCCCT-----TTTTTCTTCC
T ss_pred CEEEcCCCCCCcCC-CC----CCCCCCEEECCCCcCchhH-HHhhcccCCCEEECCCCcCCEeCH-----hHccCCCCCC
Confidence 46777777777764 22 3468888888888888777 467788888888888886655422 1113355566
Q ss_pred eeEecccccccccccccCcccccCCCccEEEeccCcccccccc-CccccCCccEEEecc
Q 022501 90 SLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCNNLINLVP-SSASFENLTTLEVSY 147 (296)
Q Consensus 90 ~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-~~~~l~~L~~L~l~~ 147 (296)
+|.+++.. +..++... +..+++|+.|+++++ .+..++. .+..+++|+.|++++
T Consensus 82 ~L~Ls~N~-l~~i~~~~---f~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~ 135 (193)
T 2wfh_A 82 TLILSYNR-LRCIPPRT---FDGLKSLRLLSLHGN-DISVVPEGAFNDLSALSHLAIGA 135 (193)
T ss_dssp EEECCSSC-CCBCCTTT---TTTCTTCCEEECCSS-CCCBCCTTTTTTCTTCCEEECCS
T ss_pred EEECCCCc-cCEeCHHH---hCCCCCCCEEECCCC-CCCeeChhhhhcCccccEEEeCC
Confidence 66555432 22222111 333445555555443 2333332 133344444444443
No 129
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.94 E-value=8.8e-08 Score=84.69 Aligned_cols=219 Identities=13% Similarity=0.068 Sum_probs=117.5
Q ss_pred cceEEEeeccCccccccCCCCCCcCCCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCccccccCCccc
Q 022501 8 NLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGMLTQ 87 (296)
Q Consensus 8 ~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 87 (296)
+|+.+.+..+ ++.++...|. . .+|+.+.+.+ ....+..+.|.+|++|+++.+..+.+..+.. ....+++
T Consensus 136 ~L~~i~l~~~-i~~I~~~aF~--~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~------~aF~~~~ 204 (401)
T 4fdw_A 136 QIAKVVLNEG-LKSIGDMAFF--N-STVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPA------STFVYAG 204 (401)
T ss_dssp CCSEEECCTT-CCEECTTTTT--T-CCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECT------TTTTTCC
T ss_pred CccEEEeCCC-ccEECHHhcC--C-CCceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEech------hhEeecc
Confidence 4555554433 5555444444 3 3566666654 3445555566677777777777665555422 1122456
Q ss_pred cceeEecccccccccccccCcccccCCCccEEEeccCccccccccCccccCCccEEEeccCcCccccCCcccccCCCCcc
Q 022501 88 IKSLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCNNLINLVPSSASFENLTTLEVSYCQRLKNLVSSSTAKSLVCLM 167 (296)
Q Consensus 88 L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~ 167 (296)
|+.+.+. .++..++... +..+++|+++.+.. .+..+......-.+|+.+.+.+ .+..+... .+.++++|+
T Consensus 205 L~~l~lp--~~l~~I~~~a---F~~~~~L~~l~l~~--~l~~I~~~aF~~~~L~~i~lp~--~i~~I~~~-aF~~c~~L~ 274 (401)
T 4fdw_A 205 IEEVLLP--VTLKEIGSQA---FLKTSQLKTIEIPE--NVSTIGQEAFRESGITTVKLPN--GVTNIASR-AFYYCPELA 274 (401)
T ss_dssp CSEEECC--TTCCEECTTT---TTTCTTCCCEECCT--TCCEECTTTTTTCCCSEEEEET--TCCEECTT-TTTTCTTCC
T ss_pred cCEEEeC--CchheehhhH---hhCCCCCCEEecCC--CccCccccccccCCccEEEeCC--CccEEChh-HhhCCCCCC
Confidence 6666664 2344444332 55567777777764 3444544332225677777743 34443322 456777778
Q ss_pred EEEEeCccccceecccccccccccccCCccceeeccCCcCcceecCCCccccCCCccEEeeccCCccccccCCc-ccCCC
Q 022501 168 KLRIDGCKLMTEIISSEGDVEEDEIVFSRLKWLSLECLDSLTSFCSGNCTFKFPSLEDLFVIDCPKMMIFSFGV-LSTPR 246 (296)
Q Consensus 168 ~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~-~~~~~ 246 (296)
.+.+.++........ .-....+..+++|+.+.+.+ +++.+.... +..|++|+.+.+.+ .++.+...+ ..+ +
T Consensus 275 ~l~l~~~~~~~~~~~--~I~~~aF~~c~~L~~l~l~~--~i~~I~~~a-F~~c~~L~~l~lp~--~l~~I~~~aF~~~-~ 346 (401)
T 4fdw_A 275 EVTTYGSTFNDDPEA--MIHPYCLEGCPKLARFEIPE--SIRILGQGL-LGGNRKVTQLTIPA--NVTQINFSAFNNT-G 346 (401)
T ss_dssp EEEEESSCCCCCTTC--EECTTTTTTCTTCCEECCCT--TCCEECTTT-TTTCCSCCEEEECT--TCCEECTTSSSSS-C
T ss_pred EEEeCCccccCCccc--EECHHHhhCCccCCeEEeCC--ceEEEhhhh-hcCCCCccEEEECc--cccEEcHHhCCCC-C
Confidence 777766432100000 00112355577777777763 356665544 55667777777743 355554432 345 6
Q ss_pred cceEEcccC
Q 022501 247 LREVRKNWG 255 (296)
Q Consensus 247 L~~l~l~~~ 255 (296)
|+.+++..+
T Consensus 347 L~~l~l~~n 355 (401)
T 4fdw_A 347 IKEVKVEGT 355 (401)
T ss_dssp CCEEEECCS
T ss_pred CCEEEEcCC
Confidence 777777543
No 130
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.93 E-value=2.2e-09 Score=85.29 Aligned_cols=109 Identities=17% Similarity=0.192 Sum_probs=88.3
Q ss_pred ccccceEEEeeccCccccccCCCCCCcCCCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCccccccCC
Q 022501 5 VIANLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGM 84 (296)
Q Consensus 5 ~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 84 (296)
..++|++|++++|.++.++ ..+. .+++|+.|++++|.+..++...+.++++|++|++++|.+..+.+. ....
T Consensus 29 ~~~~l~~L~L~~n~i~~ip-~~~~--~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~-----~f~~ 100 (193)
T 2wfh_A 29 IPRDVTELYLDGNQFTLVP-KELS--NYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPR-----TFDG 100 (193)
T ss_dssp CCTTCCEEECCSSCCCSCC-GGGG--GCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTT-----TTTT
T ss_pred CCCCCCEEECCCCcCchhH-HHhh--cccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHH-----HhCC
Confidence 3578999999999999874 5566 899999999999999999888899999999999999988776431 2345
Q ss_pred ccccceeEecccccccccccccCcccccCCCccEEEeccCc
Q 022501 85 LTQIKSLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCN 125 (296)
Q Consensus 85 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~ 125 (296)
+++|+.|.+++.. +..++... +..+++|+.|++.+++
T Consensus 101 l~~L~~L~L~~N~-l~~~~~~~---~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 101 LKSLRLLSLHGND-ISVVPEGA---FNDLSALSHLAIGANP 137 (193)
T ss_dssp CTTCCEEECCSSC-CCBCCTTT---TTTCTTCCEEECCSSC
T ss_pred CCCCCEEECCCCC-CCeeChhh---hhcCccccEEEeCCCC
Confidence 8999999999864 44554332 5568899999998864
No 131
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.93 E-value=3.4e-09 Score=91.29 Aligned_cols=201 Identities=15% Similarity=0.016 Sum_probs=129.4
Q ss_pred ccccceEEEeeccCccccccCCCCCCcCCCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCccc-cccC
Q 022501 5 VIANLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVE-KQAG 83 (296)
Q Consensus 5 ~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~-~~~~ 83 (296)
.+++|++|.|.. +++.++...|. .+++|+.+++.++.+..++...|..+.++.++....... ......+. ....
T Consensus 99 g~~~L~~l~L~~-~i~~I~~~aF~--~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~--~~~~~~i~~~~f~ 173 (329)
T 3sb4_A 99 GKQTLEKVILSE-KIKNIEDAAFK--GCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDA--YRFKNRWEHFAFI 173 (329)
T ss_dssp ECTTCCC-CBCT-TCCEECTTTTT--TCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHH--HHTSTTTTTSCEE
T ss_pred ccCCCcEEECCc-cccchhHHHhh--cCcccceEEcCCCCccccchhhhcCCCceEEecCcchhh--hhccccccccccc
Confidence 389999999999 88888888888 899999999999988888888887777666655433110 00000000 0001
Q ss_pred Ccccc--------------------------ceeEecccccccccccccCcccccCCCccEEEeccCcccccccc-Cccc
Q 022501 84 MLTQI--------------------------KSLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCNNLINLVP-SSAS 136 (296)
Q Consensus 84 ~~~~L--------------------------~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-~~~~ 136 (296)
.+.+| +.+.+.+.-.-..... ....+++|+++++.++ .+..++. .+.+
T Consensus 174 ~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~----l~~~~~~L~~l~L~~n-~i~~I~~~aF~~ 248 (329)
T 3sb4_A 174 EGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKL----IRDYMPNLVSLDISKT-NATTIPDFTFAQ 248 (329)
T ss_dssp ESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHH----HHHHCTTCCEEECTTB-CCCEECTTTTTT
T ss_pred cccccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHH----HHHhcCCCeEEECCCC-CcceecHhhhhC
Confidence 12222 2333322100000000 0123788999999875 4666665 4677
Q ss_pred cCCccEEEeccCcCccccCCcccccCCCCcc-EEEEeCccccceecccccccccccccCCccceeeccCCcCcceecCCC
Q 022501 137 FENLTTLEVSYCQRLKNLVSSSTAKSLVCLM-KLRIDGCKLMTEIISSEGDVEEDEIVFSRLKWLSLECLDSLTSFCSGN 215 (296)
Q Consensus 137 l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~-~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~ 215 (296)
+++|+.+++.+. +..+... .+.++++|+ .+.+.+ .++.+.. .++..+++|+.+++.+. +++.+....
T Consensus 249 ~~~L~~l~l~~n--i~~I~~~-aF~~~~~L~~~l~l~~--~l~~I~~------~aF~~c~~L~~l~l~~n-~i~~I~~~a 316 (329)
T 3sb4_A 249 KKYLLKIKLPHN--LKTIGQR-VFSNCGRLAGTLELPA--SVTAIEF------GAFMGCDNLRYVLATGD-KITTLGDEL 316 (329)
T ss_dssp CTTCCEEECCTT--CCEECTT-TTTTCTTCCEEEEECT--TCCEECT------TTTTTCTTEEEEEECSS-CCCEECTTT
T ss_pred CCCCCEEECCcc--cceehHH-HhhCChhccEEEEEcc--cceEEch------hhhhCCccCCEEEeCCC-ccCccchhh
Confidence 889999999863 6665443 578889999 999987 4554433 24566999999998653 477876655
Q ss_pred ccccCCCccEEee
Q 022501 216 CTFKFPSLEDLFV 228 (296)
Q Consensus 216 ~~~~~~~L~~L~l 228 (296)
+..+++|+.++.
T Consensus 317 -F~~~~~L~~ly~ 328 (329)
T 3sb4_A 317 -FGNGVPSKLIYK 328 (329)
T ss_dssp -TCTTCCCCEEEC
T ss_pred -hcCCcchhhhcc
Confidence 677888888764
No 132
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.90 E-value=1.3e-07 Score=83.50 Aligned_cols=214 Identities=12% Similarity=0.055 Sum_probs=151.1
Q ss_pred cceEEEeeccCccccccCCCCCCcCCCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCccccccCCccc
Q 022501 8 NLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGMLTQ 87 (296)
Q Consensus 8 ~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 87 (296)
+|+++.+.. .++.++...|. .|++|+.+++.++.+..++...|. ..+|+++.+..+ ++.+.. . ....+++
T Consensus 158 ~L~~i~lp~-~l~~I~~~aF~--~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~-~----aF~~~~~ 227 (401)
T 4fdw_A 158 TVQEIVFPS-TLEQLKEDIFY--YCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGS-Q----AFLKTSQ 227 (401)
T ss_dssp CCCEEECCT-TCCEECSSTTT--TCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECT-T----TTTTCTT
T ss_pred CceEEEeCC-CccEehHHHhh--CcccCCeeecCCCcceEechhhEe-ecccCEEEeCCc-hheehh-h----HhhCCCC
Confidence 588888875 67788777788 899999999999888888888777 589999999854 444322 1 1245889
Q ss_pred cceeEecccccccccccccCcccccCCCccEEEeccCcccccccc-CccccCCccEEEeccCcCc----cccCCcccccC
Q 022501 88 IKSLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCNNLINLVP-SSASFENLTTLEVSYCQRL----KNLVSSSTAKS 162 (296)
Q Consensus 88 L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-~~~~l~~L~~L~l~~c~~l----~~~~~~~~~~~ 162 (296)
|+.+.+.+ ++..+.... +.. .+|+.+.+.. .++.++. .+.++++|+.+.+.+.... ..+.. ..+.+
T Consensus 228 L~~l~l~~--~l~~I~~~a---F~~-~~L~~i~lp~--~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~-~aF~~ 298 (401)
T 4fdw_A 228 LKTIEIPE--NVSTIGQEA---FRE-SGITTVKLPN--GVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHP-YCLEG 298 (401)
T ss_dssp CCCEECCT--TCCEECTTT---TTT-CCCSEEEEET--TCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECT-TTTTT
T ss_pred CCEEecCC--CccCccccc---ccc-CCccEEEeCC--CccEEChhHhhCCCCCCEEEeCCccccCCcccEECH-HHhhC
Confidence 99999975 566665543 333 6899999954 4666654 4667899999999764321 12222 35778
Q ss_pred CCCccEEEEeCccccceecccccccccccccCCccceeeccCCcCcceecCCCccccCCCccEEeeccCCccccccCC-c
Q 022501 163 LVCLMKLRIDGCKLMTEIISSEGDVEEDEIVFSRLKWLSLECLDSLTSFCSGNCTFKFPSLEDLFVIDCPKMMIFSFG-V 241 (296)
Q Consensus 163 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~L~~L~l~~c~~l~~~~~~-~ 241 (296)
+++|+.+.+.+ .++.+.. .++..+++|+.+.+.+ +++.+.... +..+ +|+.+.+.+. ....++.+ +
T Consensus 299 c~~L~~l~l~~--~i~~I~~------~aF~~c~~L~~l~lp~--~l~~I~~~a-F~~~-~L~~l~l~~n-~~~~l~~~~F 365 (401)
T 4fdw_A 299 CPKLARFEIPE--SIRILGQ------GLLGGNRKVTQLTIPA--NVTQINFSA-FNNT-GIKEVKVEGT-TPPQVFEKVW 365 (401)
T ss_dssp CTTCCEECCCT--TCCEECT------TTTTTCCSCCEEEECT--TCCEECTTS-SSSS-CCCEEEECCS-SCCBCCCSSC
T ss_pred CccCCeEEeCC--ceEEEhh------hhhcCCCCccEEEECc--cccEEcHHh-CCCC-CCCEEEEcCC-CCcccccccc
Confidence 89999999974 2444433 2355689999999964 477776655 6778 9999999986 44444443 3
Q ss_pred ccC-CCcceEEcc
Q 022501 242 LST-PRLREVRKN 253 (296)
Q Consensus 242 ~~~-~~L~~l~l~ 253 (296)
..+ .+++.+++-
T Consensus 366 ~~~~~~l~~l~vp 378 (401)
T 4fdw_A 366 YGFPDDITVIRVP 378 (401)
T ss_dssp CCSCTTCCEEEEC
T ss_pred cCCCCCccEEEeC
Confidence 344 478888884
No 133
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.89 E-value=1.4e-09 Score=85.00 Aligned_cols=130 Identities=15% Similarity=0.141 Sum_probs=98.9
Q ss_pred cccceEEEeeccCccccccCCCCCCcCCCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCccccccCCc
Q 022501 6 IANLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGML 85 (296)
Q Consensus 6 l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 85 (296)
+++|++|++++++++.++ .... ..++|+.|++++|.+..++ .+..+++|++|++++|.+..+.+ + ....+
T Consensus 18 ~~~L~~L~l~~n~l~~i~-~~~~--~~~~L~~L~Ls~N~l~~~~--~l~~l~~L~~L~Ls~N~l~~~~~--~---~~~~l 87 (176)
T 1a9n_A 18 AVRDRELDLRGYKIPVIE-NLGA--TLDQFDAIDFSDNEIRKLD--GFPLLRRLKTLLVNNNRICRIGE--G---LDQAL 87 (176)
T ss_dssp TTSCEEEECTTSCCCSCC-CGGG--GTTCCSEEECCSSCCCEEC--CCCCCSSCCEEECCSSCCCEECS--C---HHHHC
T ss_pred cCCceEEEeeCCCCchhH-Hhhh--cCCCCCEEECCCCCCCccc--ccccCCCCCEEECCCCcccccCc--c---hhhcC
Confidence 678999999999998773 3222 4459999999999988773 57789999999999998887632 1 11348
Q ss_pred cccceeEecccccccccccccCcccccCCCccEEEeccCccccccccC----ccccCCccEEEeccCc
Q 022501 86 TQIKSLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCNNLINLVPS----SASFENLTTLEVSYCQ 149 (296)
Q Consensus 86 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~----~~~l~~L~~L~l~~c~ 149 (296)
++|+.|+++++. +..++. ...+..+++|+.|++++++ +...+.. +..+++|+.|+++++.
T Consensus 88 ~~L~~L~L~~N~-i~~~~~--~~~l~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 88 PDLTELILTNNS-LVELGD--LDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp TTCCEEECCSCC-CCCGGG--GGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred CCCCEEECCCCc-CCcchh--hHhhhcCCCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 999999999874 455543 1126678999999999975 4555653 6778999999998765
No 134
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.85 E-value=7.4e-09 Score=95.66 Aligned_cols=121 Identities=14% Similarity=0.126 Sum_probs=79.2
Q ss_pred CccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCccccccCCccccceeEecccccccccccccCcccccC
Q 022501 34 NLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGMLTQIKSLKLWELSNLLHIWEQCYKLDSVF 113 (296)
Q Consensus 34 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~ 113 (296)
.|+.|++++|.+..+|. +..+++|++|++++|.+..+ +...+.+++|+.|.++++. +..++ . +..+
T Consensus 442 ~L~~L~Ls~n~l~~lp~--~~~l~~L~~L~Ls~N~l~~l------p~~~~~l~~L~~L~Ls~N~-l~~lp-~----l~~l 507 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCH--LEQLLLVTHLDLSHNRLRAL------PPALAALRCLEVLQASDNA-LENVD-G----VANL 507 (567)
T ss_dssp TCSEEECTTSCCSSCCC--GGGGTTCCEEECCSSCCCCC------CGGGGGCTTCCEEECCSSC-CCCCG-G----GTTC
T ss_pred CceEEEecCCCCCCCcC--ccccccCcEeecCccccccc------chhhhcCCCCCEEECCCCC-CCCCc-c----cCCC
Confidence 47777887777777764 67777788888877766543 2233457778888777653 34444 2 6677
Q ss_pred CCccEEEeccCcccccc--ccCccccCCccEEEeccCcCccccCCc--ccccCCCCccEEE
Q 022501 114 QNLETLEIWWCNNLINL--VPSSASFENLTTLEVSYCQRLKNLVSS--STAKSLVCLMKLR 170 (296)
Q Consensus 114 ~~L~~L~l~~~~~l~~~--~~~~~~l~~L~~L~l~~c~~l~~~~~~--~~~~~l~~L~~L~ 170 (296)
++|+.|+++++ .+..+ |..+..+++|+.|+++++. ++..++. .....+++|+.|+
T Consensus 508 ~~L~~L~Ls~N-~l~~~~~p~~l~~l~~L~~L~L~~N~-l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 508 PRLQELLLCNN-RLQQSAAIQPLVSCPRLVLLNLQGNS-LCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp SSCCEEECCSS-CCCSSSTTGGGGGCTTCCEEECTTSG-GGGSSSCTTHHHHHCTTCSEEE
T ss_pred CCCcEEECCCC-CCCCCCCcHHHhcCCCCCEEEecCCc-CCCCccHHHHHHHHCcccCccC
Confidence 88888888775 45555 6667778888888888754 4444322 1233467787774
No 135
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.80 E-value=5.8e-09 Score=99.24 Aligned_cols=105 Identities=18% Similarity=0.116 Sum_probs=47.4
Q ss_pred cCCCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCccccccCCccccceeEecccccccccccccCccc
Q 022501 31 LFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGMLTQIKSLKLWELSNLLHIWEQCYKLD 110 (296)
Q Consensus 31 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~ 110 (296)
.+++|+.|++++|.+..+|...+ .+++|++|++++|.+..+ +..+..+++|+.|+++++. +..++.. +
T Consensus 222 ~l~~L~~L~Ls~n~l~~l~~~~~-~l~~L~~L~Ls~N~l~~l------p~~~~~l~~L~~L~Ls~N~-l~~lp~~----~ 289 (727)
T 4b8c_D 222 DDQLWHALDLSNLQIFNISANIF-KYDFLTRLYLNGNSLTEL------PAEIKNLSNLRVLDLSHNR-LTSLPAE----L 289 (727)
T ss_dssp CCCCCCEEECTTSCCSCCCGGGG-GCCSCSCCBCTTSCCSCC------CGGGGGGTTCCEEECTTSC-CSSCCSS----G
T ss_pred cCCCCcEEECCCCCCCCCChhhc-CCCCCCEEEeeCCcCccc------ChhhhCCCCCCEEeCcCCc-CCccChh----h
Confidence 34555555555555444444332 455555555555544322 1112334555555555433 2233333 3
Q ss_pred ccCCCccEEEeccCccccccccCccccCCccEEEeccC
Q 022501 111 SVFQNLETLEIWWCNNLINLVPSSASFENLTTLEVSYC 148 (296)
Q Consensus 111 ~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c 148 (296)
..+++|+.|+++++ .++.+|..+..+++|+.|+++++
T Consensus 290 ~~l~~L~~L~L~~N-~l~~lp~~~~~l~~L~~L~L~~N 326 (727)
T 4b8c_D 290 GSCFQLKYFYFFDN-MVTTLPWEFGNLCNLQFLGVEGN 326 (727)
T ss_dssp GGGTTCSEEECCSS-CCCCCCSSTTSCTTCCCEECTTS
T ss_pred cCCCCCCEEECCCC-CCCccChhhhcCCCccEEeCCCC
Confidence 44455555555443 33444444444555555555443
No 136
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.78 E-value=6.3e-11 Score=94.54 Aligned_cols=110 Identities=22% Similarity=0.216 Sum_probs=55.1
Q ss_pred HHhcCCcccEEEEeccccceEeecCccccccCCccccceeEecccccccccccccCcccccCCCccEEEeccCccccccc
Q 022501 52 FLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGMLTQIKSLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCNNLINLV 131 (296)
Q Consensus 52 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~ 131 (296)
.+..+++|++|++++|.+..+. ....+++|+.|.++++. +..++.. ...+++|+.|+++++ .+..++
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~l~-------~~~~l~~L~~L~l~~n~-l~~l~~~----~~~~~~L~~L~L~~N-~l~~l~ 109 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEKIS-------SLSGMENLRILSLGRNL-IKKIENL----DAVADTLEELWISYN-QIASLS 109 (198)
T ss_dssp HHHHTTTCSEEECSEEEESCCC-------CHHHHTTCCEEEEEEEE-ECSCSSH----HHHHHHCSEEEEEEE-ECCCHH
T ss_pred HHhcCCCCCEEECCCCCCcccc-------ccccCCCCCEEECCCCC-cccccch----hhcCCcCCEEECcCC-cCCcCC
Confidence 4455555555555555444421 11235555555555442 2233221 333455666666664 333343
Q ss_pred cCccccCCccEEEeccCcCccccCCcccccCCCCccEEEEeCccc
Q 022501 132 PSSASFENLTTLEVSYCQRLKNLVSSSTAKSLVCLMKLRIDGCKL 176 (296)
Q Consensus 132 ~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~ 176 (296)
.+..+++|++|+++++. +.+++....+..+++|++|++++|+.
T Consensus 110 -~~~~l~~L~~L~l~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~l 152 (198)
T 1ds9_A 110 -GIEKLVNLRVLYMSNNK-ITNWGEIDKLAALDKLEDLLLAGNPL 152 (198)
T ss_dssp -HHHHHHHSSEEEESEEE-CCCHHHHHHHTTTTTCSEEEECSCHH
T ss_pred -ccccCCCCCEEECCCCc-CCchhHHHHHhcCCCCCEEEecCCcc
Confidence 34456667777776543 33332212345667777777777653
No 137
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.76 E-value=1e-08 Score=79.55 Aligned_cols=104 Identities=17% Similarity=0.187 Sum_probs=77.7
Q ss_pred cceEEEeeccCccccccCCCCCCcCCCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCccccccCCccc
Q 022501 8 NLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGMLTQ 87 (296)
Q Consensus 8 ~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 87 (296)
..++++++++.++.++ .. ..++|+.|++++|.+..+++..+.++++|++|++++|.+..+.+. ....+++
T Consensus 10 ~~~~l~~s~n~l~~ip-~~----~~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~-----~f~~l~~ 79 (170)
T 3g39_A 10 SGTTVDCSGKSLASVP-TG----IPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAG-----VFDKLTQ 79 (170)
T ss_dssp ETTEEECTTSCCSSCC-SC----CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTT-----TTTTCTT
T ss_pred CCCEEEeCCCCcCccC-cc----CCCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChh-----hccCCCC
Confidence 3577888888888874 22 348899999999998888777888899999999999987765331 1245889
Q ss_pred cceeEecccccccccccccCcccccCCCccEEEeccCc
Q 022501 88 IKSLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCN 125 (296)
Q Consensus 88 L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~ 125 (296)
|++|.+++.. +..++... +..+++|+.|++++++
T Consensus 80 L~~L~L~~N~-l~~~~~~~---~~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 80 LTQLSLNDNQ-LKSIPRGA---FDNLKSLTHIWLLNNP 113 (170)
T ss_dssp CCEEECCSSC-CCCCCTTT---TTTCTTCCEEECCSSC
T ss_pred CCEEECCCCc-cCEeCHHH---hcCCCCCCEEEeCCCC
Confidence 9999998763 45554322 5668899999998864
No 138
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.76 E-value=4e-10 Score=89.88 Aligned_cols=128 Identities=19% Similarity=0.173 Sum_probs=92.2
Q ss_pred CCCCCcCCCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCccccccCCccccceeEecccccccccccc
Q 022501 26 HLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGMLTQIKSLKLWELSNLLHIWEQ 105 (296)
Q Consensus 26 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~ 105 (296)
.+. .+++|+.|++++|.+..+| .+..+++|++|++++|.+..+ +.....+++|+.|.++++ .+..++ .
T Consensus 43 ~~~--~l~~L~~L~ls~n~l~~l~--~~~~l~~L~~L~l~~n~l~~l------~~~~~~~~~L~~L~L~~N-~l~~l~-~ 110 (198)
T 1ds9_A 43 TLS--TLKACKHLALSTNNIEKIS--SLSGMENLRILSLGRNLIKKI------ENLDAVADTLEELWISYN-QIASLS-G 110 (198)
T ss_dssp HHH--HTTTCSEEECSEEEESCCC--CHHHHTTCCEEEEEEEEECSC------SSHHHHHHHCSEEEEEEE-ECCCHH-H
T ss_pred HHh--cCCCCCEEECCCCCCcccc--ccccCCCCCEEECCCCCcccc------cchhhcCCcCCEEECcCC-cCCcCC-c
Confidence 455 7899999999998888887 678899999999999977644 222344789999999986 344554 2
Q ss_pred cCcccccCCCccEEEeccCcccccccc--CccccCCccEEEeccCcCccccCC--------cccccCCCCccEEE
Q 022501 106 CYKLDSVFQNLETLEIWWCNNLINLVP--SSASFENLTTLEVSYCQRLKNLVS--------SSTAKSLVCLMKLR 170 (296)
Q Consensus 106 ~~~~~~~~~~L~~L~l~~~~~l~~~~~--~~~~l~~L~~L~l~~c~~l~~~~~--------~~~~~~l~~L~~L~ 170 (296)
+..+++|+.|+++++ .+..++. .+..+++|++|+++++.-....+. ...+..+++|+.|+
T Consensus 111 ----~~~l~~L~~L~l~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 111 ----IEKLVNLRVLYMSNN-KITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp ----HHHHHHSSEEEESEE-ECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred ----cccCCCCCEEECCCC-cCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence 667889999999986 4554443 466789999999998753222111 11256788999886
No 139
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.74 E-value=1.3e-08 Score=79.35 Aligned_cols=102 Identities=13% Similarity=0.146 Sum_probs=75.9
Q ss_pred eEEEeeccCccccccCCCCCCcCCCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCccccccCCccccc
Q 022501 10 EELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGMLTQIK 89 (296)
Q Consensus 10 ~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~ 89 (296)
+.++++++++..++ .. ..++|+.|++++|.+..+++..+.++++|++|++++|.+..+.+. ....+++|+
T Consensus 15 ~~l~~~~n~l~~iP-~~----~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~-----~~~~l~~L~ 84 (174)
T 2r9u_A 15 TLVNCQNIRLASVP-AG----IPTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTG-----VFDKLTQLT 84 (174)
T ss_dssp SEEECCSSCCSSCC-SC----CCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT-----TTTTCTTCC
T ss_pred cEEEeCCCCCCccC-CC----cCCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChh-----HhCCcchhh
Confidence 67888888887764 22 347899999999998888777888899999999999987765331 124588999
Q ss_pred eeEecccccccccccccCcccccCCCccEEEeccCc
Q 022501 90 SLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCN 125 (296)
Q Consensus 90 ~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~ 125 (296)
.|.+++. .+..++... +..+++|+.|++++++
T Consensus 85 ~L~L~~N-~l~~l~~~~---~~~l~~L~~L~L~~N~ 116 (174)
T 2r9u_A 85 QLDLNDN-HLKSIPRGA---FDNLKSLTHIYLYNNP 116 (174)
T ss_dssp EEECCSS-CCCCCCTTT---TTTCTTCSEEECCSSC
T ss_pred EEECCCC-ccceeCHHH---hccccCCCEEEeCCCC
Confidence 9999875 344544322 5568899999998864
No 140
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.71 E-value=1.5e-08 Score=96.49 Aligned_cols=153 Identities=16% Similarity=0.037 Sum_probs=86.4
Q ss_pred ccceEEEeeccCccccccCCCCCCcCCCccEEEecc-----CCCCccChHHHhcCCcccEEEEeccccceEeecCccccc
Q 022501 7 ANLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVS-----DKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQ 81 (296)
Q Consensus 7 ~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~-----~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 81 (296)
+++..|.|.++.+...... .. ....|+.+.|.. +.+ .+++..+..+++|++|++++|.+..+. ..
T Consensus 173 ~~~~~l~L~~n~~~~~~~~-~l--~~l~Ls~~~i~~~~~~~n~~-~~~~~~~~~l~~L~~L~Ls~n~l~~l~------~~ 242 (727)
T 4b8c_D 173 PLTPKIELFANGKDEANQA-LL--QHKKLSQYSIDEDDDIENRM-VMPKDSKYDDQLWHALDLSNLQIFNIS------AN 242 (727)
T ss_dssp -----------------------------------------------------CCCCCCEEECTTSCCSCCC------GG
T ss_pred CccceEEeeCCCCCcchhh-Hh--hcCccCcccccCccccccce-ecChhhhccCCCCcEEECCCCCCCCCC------hh
Confidence 4567788877776664322 22 234444444422 222 355667888999999999999776542 23
Q ss_pred cCCccccceeEecccccccccccccCcccccCCCccEEEeccCccccccccCccccCCccEEEeccCcCccccCCccccc
Q 022501 82 AGMLTQIKSLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCNNLINLVPSSASFENLTTLEVSYCQRLKNLVSSSTAK 161 (296)
Q Consensus 82 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~ 161 (296)
...+++|++|.++++. +..++.. +..+++|+.|+++++. +..+|..+..+++|++|+++++ .++.++. .+.
T Consensus 243 ~~~l~~L~~L~Ls~N~-l~~lp~~----~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~L~~N-~l~~lp~--~~~ 313 (727)
T 4b8c_D 243 IFKYDFLTRLYLNGNS-LTELPAE----IKNLSNLRVLDLSHNR-LTSLPAELGSCFQLKYFYFFDN-MVTTLPW--EFG 313 (727)
T ss_dssp GGGCCSCSCCBCTTSC-CSCCCGG----GGGGTTCCEEECTTSC-CSSCCSSGGGGTTCSEEECCSS-CCCCCCS--STT
T ss_pred hcCCCCCCEEEeeCCc-CcccChh----hhCCCCCCEEeCcCCc-CCccChhhcCCCCCCEEECCCC-CCCccCh--hhh
Confidence 3468999999999874 4466655 7789999999999874 6688888888999999999986 4666653 378
Q ss_pred CCCCccEEEEeCccccc
Q 022501 162 SLVCLMKLRIDGCKLMT 178 (296)
Q Consensus 162 ~l~~L~~L~l~~~~~~~ 178 (296)
.+++|+.|++++|....
T Consensus 314 ~l~~L~~L~L~~N~l~~ 330 (727)
T 4b8c_D 314 NLCNLQFLGVEGNPLEK 330 (727)
T ss_dssp SCTTCCCEECTTSCCCS
T ss_pred cCCCccEEeCCCCccCC
Confidence 89999999999987543
No 141
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.61 E-value=9.1e-08 Score=74.17 Aligned_cols=103 Identities=14% Similarity=0.065 Sum_probs=68.0
Q ss_pred CccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCccccccCCccccceeEecccccccccccccCcccccC
Q 022501 34 NLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGMLTQIKSLKLWELSNLLHIWEQCYKLDSVF 113 (296)
Q Consensus 34 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~ 113 (296)
..+.++++++.+..+|..+ .++|++|++++|.++++.+ .....+++|++|.+++.. +..++... +..+
T Consensus 10 ~~~~l~~s~n~l~~ip~~~---~~~l~~L~L~~N~i~~~~~-----~~~~~l~~L~~L~Ls~N~-l~~l~~~~---f~~l 77 (170)
T 3g39_A 10 SGTTVDCSGKSLASVPTGI---PTTTQVLYLYDNQITKLEP-----GVFDRLTQLTRLDLDNNQ-LTVLPAGV---FDKL 77 (170)
T ss_dssp ETTEEECTTSCCSSCCSCC---CTTCSEEECCSSCCCCCCT-----TTTTTCTTCSEEECCSSC-CCCCCTTT---TTTC
T ss_pred CCCEEEeCCCCcCccCccC---CCCCcEEEcCCCcCCccCh-----hhhcCcccCCEEECCCCC-cCccChhh---ccCC
Confidence 4567888877777777532 3678888888887766533 112447788888887653 44444331 3567
Q ss_pred CCccEEEeccCccccccccC-ccccCCccEEEeccCc
Q 022501 114 QNLETLEIWWCNNLINLVPS-SASFENLTTLEVSYCQ 149 (296)
Q Consensus 114 ~~L~~L~l~~~~~l~~~~~~-~~~l~~L~~L~l~~c~ 149 (296)
++|+.|+++++ .+..++.. +..+++|++|++++++
T Consensus 78 ~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 78 TQLTQLSLNDN-QLKSIPRGAFDNLKSLTHIWLLNNP 113 (170)
T ss_dssp TTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCCEEECCCC-ccCEeCHHHhcCCCCCCEEEeCCCC
Confidence 78888888775 45555553 5667888888887754
No 142
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.55 E-value=1.9e-07 Score=72.71 Aligned_cols=102 Identities=14% Similarity=0.083 Sum_probs=71.7
Q ss_pred ccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCccccccCCccccceeEecccccccccccccCcccccCC
Q 022501 35 LKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGMLTQIKSLKLWELSNLLHIWEQCYKLDSVFQ 114 (296)
Q Consensus 35 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~ 114 (296)
-+.++++++.+..+|..+ .++|++|++++|.+.++.+ .....+++|+.|.+++. .+..++... +..++
T Consensus 14 ~~~l~~~~n~l~~iP~~~---~~~L~~L~Ls~N~l~~~~~-----~~~~~l~~L~~L~Ls~N-~l~~i~~~~---~~~l~ 81 (174)
T 2r9u_A 14 QTLVNCQNIRLASVPAGI---PTDKQRLWLNNNQITKLEP-----GVFDHLVNLQQLYFNSN-KLTAIPTGV---FDKLT 81 (174)
T ss_dssp SSEEECCSSCCSSCCSCC---CTTCSEEECCSSCCCCCCT-----TTTTTCTTCCEEECCSS-CCCCCCTTT---TTTCT
T ss_pred CcEEEeCCCCCCccCCCc---CCCCcEEEeCCCCccccCH-----HHhcCCcCCCEEECCCC-CCCccChhH---hCCcc
Confidence 467888888888887532 3788888888887766533 12345888888888876 455554431 35678
Q ss_pred CccEEEeccCccccccccC-ccccCCccEEEeccCc
Q 022501 115 NLETLEIWWCNNLINLVPS-SASFENLTTLEVSYCQ 149 (296)
Q Consensus 115 ~L~~L~l~~~~~l~~~~~~-~~~l~~L~~L~l~~c~ 149 (296)
+|+.|+++++ .+..++.. +..+++|++|++++++
T Consensus 82 ~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~L~~N~ 116 (174)
T 2r9u_A 82 QLTQLDLNDN-HLKSIPRGAFDNLKSLTHIYLYNNP 116 (174)
T ss_dssp TCCEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSC
T ss_pred hhhEEECCCC-ccceeCHHHhccccCCCEEEeCCCC
Confidence 8889988875 55566654 6678888888888754
No 143
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.41 E-value=3.2e-09 Score=93.04 Aligned_cols=89 Identities=15% Similarity=0.011 Sum_probs=40.0
Q ss_pred CCCccEEEeccCccccc-----cccCccccCCccEEEeccCcCccccCC---cccccCCCCccEEEEeCccccceecccc
Q 022501 113 FQNLETLEIWWCNNLIN-----LVPSSASFENLTTLEVSYCQRLKNLVS---SSTAKSLVCLMKLRIDGCKLMTEIISSE 184 (296)
Q Consensus 113 ~~~L~~L~l~~~~~l~~-----~~~~~~~l~~L~~L~l~~c~~l~~~~~---~~~~~~l~~L~~L~l~~~~~~~~~~~~~ 184 (296)
.++|++|++++|. +++ +...+...++|++|++++|. +++... ...+...++|++|++++|..-..-..
T Consensus 154 ~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~L~~L~Ls~N~-l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~-- 229 (372)
T 3un9_A 154 QCQITTLRLSNNP-LTAAGVAVLMEGLAGNTSVTHLSLLHTG-LGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAAL-- 229 (372)
T ss_dssp TCCCCEEECCSSC-CHHHHHHHHHHHHHTCSSCCEEECTTSS-CHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHH--
T ss_pred CCccceeeCCCCC-CChHHHHHHHHHHhcCCCcCEEeCCCCC-CCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHH--
Confidence 3456666666653 221 22222335566666666543 332110 01223445677777766643111000
Q ss_pred cccccccccCCccceeeccCCc
Q 022501 185 GDVEEDEIVFSRLKWLSLECLD 206 (296)
Q Consensus 185 ~~~~~~~~~~~~L~~L~l~~~~ 206 (296)
.....+...++|++|++++++
T Consensus 230 -~l~~~L~~~~~L~~L~Ls~N~ 250 (372)
T 3un9_A 230 -ALARAAREHPSLELLHLYFNE 250 (372)
T ss_dssp -HHHHHHHHCSSCCEEECTTSS
T ss_pred -HHHHHHHhCCCCCEEeccCCC
Confidence 000012225677777777654
No 144
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.36 E-value=2.1e-07 Score=71.99 Aligned_cols=41 Identities=17% Similarity=0.154 Sum_probs=23.6
Q ss_pred CccceeeccCCcCcceecCCCccccCCCccEEeeccCCcccc
Q 022501 195 SRLKWLSLECLDSLTSFCSGNCTFKFPSLEDLFVIDCPKMMI 236 (296)
Q Consensus 195 ~~L~~L~l~~~~~L~~l~~~~~~~~~~~L~~L~l~~c~~l~~ 236 (296)
++|++|++++|+++++--... ...+++|++|++++|+.++.
T Consensus 114 ~~L~~L~Ls~C~~ITD~Gl~~-L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 114 KSMLEMEIISCGNVTDKGIIA-LHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp HHCCEEEEESCTTCCHHHHHH-GGGCTTCCEEEEESCTTCCC
T ss_pred CCCCEEEcCCCCcCCHHHHHH-HhcCCCCCEEECCCCCCCCc
Confidence 356666666666665533222 23466677777777766654
No 145
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.34 E-value=2.3e-07 Score=71.74 Aligned_cols=89 Identities=16% Similarity=0.131 Sum_probs=49.3
Q ss_pred cccEEEEeccccceEeecCccccccCCccccceeEecccccccccccccCccccc----CCCccEEEeccCcccccccc-
Q 022501 58 NVERLKLRNSSYKEIFSNGEVEKQAGMLTQIKSLKLWELSNLLHIWEQCYKLDSV----FQNLETLEIWWCNNLINLVP- 132 (296)
Q Consensus 58 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~----~~~L~~L~l~~~~~l~~~~~- 132 (296)
+|++|++++|.+ ...++... ..+++|++|++++|..+++..... +.. .++|++|++++|..+++...
T Consensus 62 ~L~~LDLs~~~I----td~GL~~L-~~~~~L~~L~L~~C~~ItD~gL~~---L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~ 133 (176)
T 3e4g_A 62 KIQAIDATDSCI----MSIGFDHM-EGLQYVEKIRLCKCHYIEDGCLER---LSQLENLQKSMLEMEIISCGNVTDKGII 133 (176)
T ss_dssp CEEEEEEESCCC----CGGGGGGG-TTCSCCCEEEEESCTTCCHHHHHH---HHTCHHHHHHCCEEEEESCTTCCHHHHH
T ss_pred eEeEEeCcCCCc----cHHHHHHh-cCCCCCCEEEeCCCCccCHHHHHH---HHhcccccCCCCEEEcCCCCcCCHHHHH
Confidence 466666666532 12222221 346666666666666555432211 222 23577777777776654322
Q ss_pred CccccCCccEEEeccCcCcccc
Q 022501 133 SSASFENLTTLEVSYCQRLKNL 154 (296)
Q Consensus 133 ~~~~l~~L~~L~l~~c~~l~~~ 154 (296)
.+..+++|++|++++|+.+++.
T Consensus 134 ~L~~~~~L~~L~L~~c~~Itd~ 155 (176)
T 3e4g_A 134 ALHHFRNLKYLFLSDLPGVKEK 155 (176)
T ss_dssp HGGGCTTCCEEEEESCTTCCCH
T ss_pred HHhcCCCCCEEECCCCCCCCch
Confidence 2345678888888888777764
No 146
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.33 E-value=5.7e-07 Score=77.73 Aligned_cols=75 Identities=16% Similarity=0.226 Sum_probs=38.6
Q ss_pred EEeecc-CccccccCCCCCCcCCCccEEEecc-CCCCccChHHHhcCCcccEEEEeccccceEeecCccccccCCccccc
Q 022501 12 LKLSGK-DITMICHDHLPKHLFQNLKSLEIVS-DKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGMLTQIK 89 (296)
Q Consensus 12 L~L~~~-~~~~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~ 89 (296)
++.+++ ++..++ . ++ .+++|+.|+|++ |.+..++...+..+++|++|++++|.+.++.+. ....+++|+
T Consensus 13 v~~~~~n~l~~ip-~-l~--~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~-----~~~~l~~L~ 83 (347)
T 2ifg_A 13 LRCTRDGALDSLH-H-LP--GAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPD-----AFHFTPRLS 83 (347)
T ss_dssp EECCSSCCCTTTT-T-SC--SCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTT-----GGGSCSCCC
T ss_pred EEcCCCCCCCccC-C-CC--CCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHH-----HhcCCcCCC
Confidence 444443 555553 2 44 455566666653 555555555555556666666665555554321 112355555
Q ss_pred eeEecc
Q 022501 90 SLKLWE 95 (296)
Q Consensus 90 ~L~l~~ 95 (296)
.|++++
T Consensus 84 ~L~l~~ 89 (347)
T 2ifg_A 84 RLNLSF 89 (347)
T ss_dssp EEECCS
T ss_pred EEeCCC
Confidence 555554
No 147
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.32 E-value=6e-07 Score=78.11 Aligned_cols=64 Identities=13% Similarity=-0.020 Sum_probs=33.8
Q ss_pred CCCCccEEEEeCccccceecccccccccccccCCccceeeccCCcCccee-----cCCCccccCCCccEEeeccCC
Q 022501 162 SLVCLMKLRIDGCKLMTEIISSEGDVEEDEIVFSRLKWLSLECLDSLTSF-----CSGNCTFKFPSLEDLFVIDCP 232 (296)
Q Consensus 162 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l-----~~~~~~~~~~~L~~L~l~~c~ 232 (296)
.+|+|++|.+.+|........... ....+|+|++|+++++ .+.+. ... ...+++|+.|++++|.
T Consensus 250 ~~p~Lr~L~L~~~~i~~~~~~~la----~a~~~~~L~~LdLs~n-~L~d~G~~~L~~~--L~~l~~L~~L~L~~n~ 318 (362)
T 2ra8_A 250 RFPNLKWLGIVDAEEQNVVVEMFL----ESDILPQLETMDISAG-VLTDEGARLLLDH--VDKIKHLKFINMKYNY 318 (362)
T ss_dssp TCTTCCEEEEESCTTHHHHHHHHH----HCSSGGGCSEEECCSS-CCBHHHHHHHHTT--HHHHTTCSEEECCSBB
T ss_pred CCCCcCEEeCCCCCCchHHHHHHH----hCccCCCCCEEECCCC-CCChHHHHHHHhh--cccCCcceEEECCCCc
Confidence 467777777777654321110000 0113677788887653 34442 111 1356778888887763
No 148
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.20 E-value=3e-06 Score=73.13 Aligned_cols=84 Identities=18% Similarity=0.161 Sum_probs=68.4
Q ss_pred cccceEEEeec-cCccccccCCCCCCcCCCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCccccccCC
Q 022501 6 IANLEELKLSG-KDITMICHDHLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGM 84 (296)
Q Consensus 6 l~~L~~L~L~~-~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 84 (296)
+++|++|+|++ |.++.+.+..+. .+++|+.|+|++|.+..+++..|.++++|++|++++|.+..+.+.. ...
T Consensus 30 ~~~L~~L~l~~~n~l~~~~~~~~~--~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~-----~~~ 102 (347)
T 2ifg_A 30 AENLTELYIENQQHLQHLELRDLR--GLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKT-----VQG 102 (347)
T ss_dssp CSCCSEEECCSCSSCCEECGGGSC--SCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTT-----TCS
T ss_pred CCCeeEEEccCCCCCCCcChhHhc--cccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHH-----ccc
Confidence 56799999997 999999777788 8999999999999999888888899999999999999887654311 112
Q ss_pred ccccceeEecccc
Q 022501 85 LTQIKSLKLWELS 97 (296)
Q Consensus 85 ~~~L~~L~l~~~~ 97 (296)
+ +|+.|.+.+.+
T Consensus 103 ~-~L~~l~l~~N~ 114 (347)
T 2ifg_A 103 L-SLQELVLSGNP 114 (347)
T ss_dssp C-CCCEEECCSSC
T ss_pred C-CceEEEeeCCC
Confidence 3 38899888654
No 149
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.10 E-value=4.9e-06 Score=72.37 Aligned_cols=159 Identities=18% Similarity=0.120 Sum_probs=96.8
Q ss_pred ccccceEEEeeccCccc-----ccc----CCCCCCcCCCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeec
Q 022501 5 VIANLEELKLSGKDITM-----ICH----DHLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSN 75 (296)
Q Consensus 5 ~l~~L~~L~L~~~~~~~-----~~~----~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~ 75 (296)
.|++|+.|.+.+...+. +.. ..+. .+|+|+.|+|+++....++. + .+++|++|.+..|.+..
T Consensus 137 ~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~--~~P~L~~L~L~g~~~l~l~~--~-~~~~L~~L~L~~~~l~~---- 207 (362)
T 2ra8_A 137 KFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLD--AMPLLNNLKIKGTNNLSIGK--K-PRPNLKSLEIISGGLPD---- 207 (362)
T ss_dssp HHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHH--TCTTCCEEEEECCBTCBCCS--C-BCTTCSEEEEECSBCCH----
T ss_pred hcchhhheeecCcchhhcccccccccCHHHHHh--cCCCCcEEEEeCCCCceecc--c-cCCCCcEEEEecCCCCh----
Confidence 47999999997643221 100 1123 68999999998874445553 2 48999999999875422
Q ss_pred Ccccc-ccCCccccceeEeccccc-------ccccccccCcccccCCCccEEEeccCcccccccc---CccccCCccEEE
Q 022501 76 GEVEK-QAGMLTQIKSLKLWELSN-------LLHIWEQCYKLDSVFQNLETLEIWWCNNLINLVP---SSASFENLTTLE 144 (296)
Q Consensus 76 ~~~~~-~~~~~~~L~~L~l~~~~~-------l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~---~~~~l~~L~~L~ 144 (296)
..+.. ....+|+|++|.++...+ +..+... .....+|+|+.|.+.+|........ ....+++|++|+
T Consensus 208 ~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~--l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~Ld 285 (362)
T 2ra8_A 208 SVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPL--FSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMD 285 (362)
T ss_dssp HHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGG--SCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEE
T ss_pred HHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHH--HhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEE
Confidence 11111 113589999999853211 1111111 0023589999999988754322111 113478999999
Q ss_pred eccCcCccccCCcc---cccCCCCccEEEEeCcc
Q 022501 145 VSYCQRLKNLVSSS---TAKSLVCLMKLRIDGCK 175 (296)
Q Consensus 145 l~~c~~l~~~~~~~---~~~~l~~L~~L~l~~~~ 175 (296)
++.+ .+.+..... ....+++|+.|+++.|.
T Consensus 286 Ls~n-~L~d~G~~~L~~~L~~l~~L~~L~L~~n~ 318 (362)
T 2ra8_A 286 ISAG-VLTDEGARLLLDHVDKIKHLKFINMKYNY 318 (362)
T ss_dssp CCSS-CCBHHHHHHHHTTHHHHTTCSEEECCSBB
T ss_pred CCCC-CCChHHHHHHHhhcccCCcceEEECCCCc
Confidence 9764 565531111 12457899999999885
No 150
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.06 E-value=2.7e-07 Score=80.78 Aligned_cols=169 Identities=18% Similarity=0.131 Sum_probs=107.5
Q ss_pred cccccceEEEeeccCccccccCCCCC---CcCCCccEEEeccCCCCcc-ChHHHhcCCcccEEEEeccccceEeecCccc
Q 022501 4 QVIANLEELKLSGKDITMICHDHLPK---HLFQNLKSLEIVSDKSDNF-SIGFLQRFHNVERLKLRNSSYKEIFSNGEVE 79 (296)
Q Consensus 4 ~~l~~L~~L~L~~~~~~~~~~~~~~~---~~l~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 79 (296)
.++++|++|+++++.+.......+.. ...++|+.|++++|.+... ...+...+++|++|++++|.+..... ..+.
T Consensus 69 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~-~~L~ 147 (372)
T 3un9_A 69 EVLSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEAC-KDLR 147 (372)
T ss_dssp HHHTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHH-HHHH
T ss_pred HHHhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHH-HHHH
Confidence 34789999999998887653222221 1347999999999987633 22344567899999999996643211 1111
Q ss_pred ccc-CCccccceeEeccccccccccccc-CcccccCCCccEEEeccCccccc-----cccCccccCCccEEEeccCcCcc
Q 022501 80 KQA-GMLTQIKSLKLWELSNLLHIWEQC-YKLDSVFQNLETLEIWWCNNLIN-----LVPSSASFENLTTLEVSYCQRLK 152 (296)
Q Consensus 80 ~~~-~~~~~L~~L~l~~~~~l~~~~~~~-~~~~~~~~~L~~L~l~~~~~l~~-----~~~~~~~l~~L~~L~l~~c~~l~ 152 (296)
... ...++|++|++++|. +....... ...+...++|++|++++|. +++ +...+...++|+.|++++|. ++
T Consensus 148 ~~L~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~L~~L~Ls~N~-l~~~g~~~L~~~L~~~~~L~~L~Ls~N~-i~ 224 (372)
T 3un9_A 148 DLLLHDQCQITTLRLSNNP-LTAAGVAVLMEGLAGNTSVTHLSLLHTG-LGDEGLELLAAQLDRNRQLQELNVAYNG-AG 224 (372)
T ss_dssp HHHHSTTCCCCEEECCSSC-CHHHHHHHHHHHHHTCSSCCEEECTTSS-CHHHHHHHHHHHGGGCSCCCEEECCSSC-CC
T ss_pred HHHHhcCCccceeeCCCCC-CChHHHHHHHHHHhcCCCcCEEeCCCCC-CCcHHHHHHHHHHhcCCCcCeEECCCCC-CC
Confidence 111 236789999999885 32211110 0013567889999999975 432 23344556799999999874 54
Q ss_pred ccCCc---ccccCCCCccEEEEeCccc
Q 022501 153 NLVSS---STAKSLVCLMKLRIDGCKL 176 (296)
Q Consensus 153 ~~~~~---~~~~~l~~L~~L~l~~~~~ 176 (296)
+.... ..+...++|++|++++|..
T Consensus 225 ~~g~~~l~~~L~~~~~L~~L~Ls~N~i 251 (372)
T 3un9_A 225 DTAALALARAAREHPSLELLHLYFNEL 251 (372)
T ss_dssp HHHHHHHHHHHHHCSSCCEEECTTSSC
T ss_pred HHHHHHHHHHHHhCCCCCEEeccCCCC
Confidence 43211 1233568899999999863
No 151
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.03 E-value=0.00019 Score=63.04 Aligned_cols=204 Identities=11% Similarity=0.058 Sum_probs=104.5
Q ss_pred CccccccCCCCCCcCCCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCccccccCCccccceeEeccc-
Q 022501 18 DITMICHDHLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGMLTQIKSLKLWEL- 96 (296)
Q Consensus 18 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~- 96 (296)
.+..++...+. .+++|+.+.+.++ ...++...|.++++|+.+.+..+ ++.+.. . ....+..|+.+.+...
T Consensus 149 ~~~~i~~~aF~--~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~-~~~I~~-~----~F~~~~~L~~i~~~~~~ 219 (394)
T 4fs7_A 149 GVTVIGDEAFA--TCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN-LKIIRD-Y----CFAECILLENMEFPNSL 219 (394)
T ss_dssp TCCEECTTTTT--TCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT-CCEECT-T----TTTTCTTCCBCCCCTTC
T ss_pred cccccchhhhc--ccCCCcEEecCCc-cceeccccccCCCCceEEEcCCC-ceEeCc-h----hhccccccceeecCCCc
Confidence 34444445565 6788888888543 23556666777888888777654 222211 0 1122444444333211
Q ss_pred -------------------ccccccccccCcccccCCCccEEEeccCcccccccc-CccccCCccEEEeccCcCccccCC
Q 022501 97 -------------------SNLLHIWEQCYKLDSVFQNLETLEIWWCNNLINLVP-SSASFENLTTLEVSYCQRLKNLVS 156 (296)
Q Consensus 97 -------------------~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-~~~~l~~L~~L~l~~c~~l~~~~~ 156 (296)
..+..+... .+..+..|+.+.+... ...+.. .+..+..++.+..... .+ .
T Consensus 220 ~~i~~~~~~~~~l~~i~ip~~~~~i~~~---~f~~~~~l~~~~~~~~--~~~i~~~~F~~~~~l~~~~~~~~-~i----~ 289 (394)
T 4fs7_A 220 YYLGDFALSKTGVKNIIIPDSFTELGKS---VFYGCTDLESISIQNN--KLRIGGSLFYNCSGLKKVIYGSV-IV----P 289 (394)
T ss_dssp CEECTTTTTTCCCCEEEECTTCCEECSS---TTTTCSSCCEEEECCT--TCEECSCTTTTCTTCCEEEECSS-EE----C
T ss_pred eEeehhhcccCCCceEEECCCceecccc---cccccccceeEEcCCC--cceeeccccccccccceeccCce-ee----c
Confidence 011111111 1333444555555431 111111 2233444554444321 11 1
Q ss_pred cccccCCCCccEEEEeCccccceecccccccccccccCCccceeeccCCcCcceecCCCccccCCCccEEeeccCCcccc
Q 022501 157 SSTAKSLVCLMKLRIDGCKLMTEIISSEGDVEEDEIVFSRLKWLSLECLDSLTSFCSGNCTFKFPSLEDLFVIDCPKMMI 236 (296)
Q Consensus 157 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~L~~L~l~~c~~l~~ 236 (296)
...+..+.+|+.+.+.+. ++.+.. .++..+++|+.+++.+ .++.+.... +..|.+|+.+.+.. .++.
T Consensus 290 ~~~F~~~~~L~~i~l~~~--i~~I~~------~aF~~c~~L~~i~lp~--~v~~I~~~a-F~~c~~L~~i~lp~--~l~~ 356 (394)
T 4fs7_A 290 EKTFYGCSSLTEVKLLDS--VKFIGE------EAFESCTSLVSIDLPY--LVEEIGKRS-FRGCTSLSNINFPL--SLRK 356 (394)
T ss_dssp TTTTTTCTTCCEEEECTT--CCEECT------TTTTTCTTCCEECCCT--TCCEECTTT-TTTCTTCCEECCCT--TCCE
T ss_pred cccccccccccccccccc--cceech------hhhcCCCCCCEEEeCC--cccEEhHHh-ccCCCCCCEEEECc--cccE
Confidence 123455667777776542 332221 2355578888888853 366665544 67788888888854 3666
Q ss_pred ccCC-cccCCCcceEEcc
Q 022501 237 FSFG-VLSTPRLREVRKN 253 (296)
Q Consensus 237 ~~~~-~~~~~~L~~l~l~ 253 (296)
+... +..+++|+.+++.
T Consensus 357 I~~~aF~~C~~L~~i~lp 374 (394)
T 4fs7_A 357 IGANAFQGCINLKKVELP 374 (394)
T ss_dssp ECTTTBTTCTTCCEEEEE
T ss_pred ehHHHhhCCCCCCEEEEC
Confidence 6544 3577888888884
No 152
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.96 E-value=0.00033 Score=61.49 Aligned_cols=58 Identities=10% Similarity=0.036 Sum_probs=32.1
Q ss_pred cccCCccceeeccCCcCcceecCCCccccCCCccEEeeccCCccccccCC-cccCCCcceEEcc
Q 022501 191 EIVFSRLKWLSLECLDSLTSFCSGNCTFKFPSLEDLFVIDCPKMMIFSFG-VLSTPRLREVRKN 253 (296)
Q Consensus 191 ~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~L~~L~l~~c~~l~~~~~~-~~~~~~L~~l~l~ 253 (296)
+..+++|+++.+.+ .++.+.... +..|.+|+.+.+-. .++.+... +..|++|+.+++.
T Consensus 307 F~~c~~L~~i~lp~--~v~~I~~~a-F~~C~~L~~i~ip~--sv~~I~~~aF~~C~~L~~i~~~ 365 (394)
T 4gt6_A 307 FAGCISLKSIDIPE--GITQILDDA-FAGCEQLERIAIPS--SVTKIPESAFSNCTALNNIEYS 365 (394)
T ss_dssp TTTCTTCCEEECCT--TCCEECTTT-TTTCTTCCEEEECT--TCCBCCGGGGTTCTTCCEEEES
T ss_pred ecCCCCcCEEEeCC--cccEehHhH-hhCCCCCCEEEECc--ccCEEhHhHhhCCCCCCEEEEC
Confidence 44455555555542 244443333 55667777777743 35555433 3466777777775
No 153
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.68 E-value=0.0013 Score=57.65 Aligned_cols=217 Identities=14% Similarity=0.088 Sum_probs=130.6
Q ss_pred cccceEEEeeccCccccccCCCCCCcCCCccEEEeccCCCCccChHHHhcCCcccEEEEecc------------ccceEe
Q 022501 6 IANLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNS------------SYKEIF 73 (296)
Q Consensus 6 l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~------------~~~~~~ 73 (296)
+++|+++.+..+ +..++...+. .+++|+.+++..+ ...+....+.+++.|+.+.+..+ .++.+.
T Consensus 161 c~~L~~i~l~~~-~~~I~~~~F~--~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~i~~~~~~~~~l~~i~ 236 (394)
T 4fs7_A 161 CESLEYVSLPDS-METLHNGLFS--GCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYYLGDFALSKTGVKNII 236 (394)
T ss_dssp CTTCCEEECCTT-CCEECTTTTT--TCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCEECTTTTTTCCCCEEE
T ss_pred cCCCcEEecCCc-cceecccccc--CCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceEeehhhcccCCCceEE
Confidence 577888888653 4456556676 7889999988654 34555556677777777766543 111111
Q ss_pred ecC---ccc-cccCCccccceeEecccccccccccccCcccccCCCccEEEeccCccccccccCccccCCccEEEeccCc
Q 022501 74 SNG---EVE-KQAGMLTQIKSLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCNNLINLVPSSASFENLTTLEVSYCQ 149 (296)
Q Consensus 74 ~~~---~~~-~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~ 149 (296)
-.. .++ .....+..|+.+.+.. ....+.... +..+..++........ + ....+..+.+|+.+.+.+
T Consensus 237 ip~~~~~i~~~~f~~~~~l~~~~~~~--~~~~i~~~~---F~~~~~l~~~~~~~~~-i--~~~~F~~~~~L~~i~l~~-- 306 (394)
T 4fs7_A 237 IPDSFTELGKSVFYGCTDLESISIQN--NKLRIGGSL---FYNCSGLKKVIYGSVI-V--PEKTFYGCSSLTEVKLLD-- 306 (394)
T ss_dssp ECTTCCEECSSTTTTCSSCCEEEECC--TTCEECSCT---TTTCTTCCEEEECSSE-E--CTTTTTTCTTCCEEEECT--
T ss_pred ECCCceecccccccccccceeEEcCC--Ccceeeccc---cccccccceeccCcee-e--cccccccccccccccccc--
Confidence 000 000 1112355666666643 222332221 5556778877765421 1 112345678999998864
Q ss_pred CccccCCcccccCCCCccEEEEeCccccceecccccccccccccCCccceeeccCCcCcceecCCCccccCCCccEEeec
Q 022501 150 RLKNLVSSSTAKSLVCLMKLRIDGCKLMTEIISSEGDVEEDEIVFSRLKWLSLECLDSLTSFCSGNCTFKFPSLEDLFVI 229 (296)
Q Consensus 150 ~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~L~~L~l~ 229 (296)
.+..+... .+.++.+|+.+.+.+. ++.+.. .++..+++|+.+.+.. +++.+.... +..|++|+.+.+.
T Consensus 307 ~i~~I~~~-aF~~c~~L~~i~lp~~--v~~I~~------~aF~~c~~L~~i~lp~--~l~~I~~~a-F~~C~~L~~i~lp 374 (394)
T 4fs7_A 307 SVKFIGEE-AFESCTSLVSIDLPYL--VEEIGK------RSFRGCTSLSNINFPL--SLRKIGANA-FQGCINLKKVELP 374 (394)
T ss_dssp TCCEECTT-TTTTCTTCCEECCCTT--CCEECT------TTTTTCTTCCEECCCT--TCCEECTTT-BTTCTTCCEEEEE
T ss_pred ccceechh-hhcCCCCCCEEEeCCc--ccEEhH------HhccCCCCCCEEEECc--cccEehHHH-hhCCCCCCEEEEC
Confidence 34444332 4678889999988542 443322 2456689999999964 377776655 7889999999996
Q ss_pred cCCccccccCCcccCCCcceE
Q 022501 230 DCPKMMIFSFGVLSTPRLREV 250 (296)
Q Consensus 230 ~c~~l~~~~~~~~~~~~L~~l 250 (296)
+ .++.+...+..+++|+.+
T Consensus 375 ~--~~~~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 375 K--RLEQYRYDFEDTTKFKWI 393 (394)
T ss_dssp G--GGGGGGGGBCTTCEEEEE
T ss_pred C--CCEEhhheecCCCCCcEE
Confidence 5 355555556677888765
No 154
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.68 E-value=0.00091 Score=58.61 Aligned_cols=81 Identities=11% Similarity=0.151 Sum_probs=45.8
Q ss_pred cccCCCCccEEEEeCccccceecccccccccccccCCccceeeccCCcCcceecCCCccccCCCccEEeeccCCcccccc
Q 022501 159 TAKSLVCLMKLRIDGCKLMTEIISSEGDVEEDEIVFSRLKWLSLECLDSLTSFCSGNCTFKFPSLEDLFVIDCPKMMIFS 238 (296)
Q Consensus 159 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~L~~L~l~~c~~l~~~~ 238 (296)
.+.++.+|+++.+... ++.+. ..++..+++|+++.+-. .++.+.... +..|++|+.+.+.+... ..
T Consensus 306 aF~~c~~L~~i~lp~~--v~~I~------~~aF~~C~~L~~i~ip~--sv~~I~~~a-F~~C~~L~~i~~~~~~~--~~- 371 (394)
T 4gt6_A 306 VFAGCISLKSIDIPEG--ITQIL------DDAFAGCEQLERIAIPS--SVTKIPESA-FSNCTALNNIEYSGSRS--QW- 371 (394)
T ss_dssp TTTTCTTCCEEECCTT--CCEEC------TTTTTTCTTCCEEEECT--TCCBCCGGG-GTTCTTCCEEEESSCHH--HH-
T ss_pred eecCCCCcCEEEeCCc--ccEeh------HhHhhCCCCCCEEEECc--ccCEEhHhH-hhCCCCCCEEEECCcee--eh-
Confidence 3455566666666432 22221 23566789999999853 366665444 77899999999987532 22
Q ss_pred CCcccCCCcceEEcc
Q 022501 239 FGVLSTPRLREVRKN 253 (296)
Q Consensus 239 ~~~~~~~~L~~l~l~ 253 (296)
..+..+.+|+.+.+.
T Consensus 372 ~~~~~~~~L~~i~i~ 386 (394)
T 4gt6_A 372 NAISTDSGLQNLPVA 386 (394)
T ss_dssp HTCBCCCCC------
T ss_pred hhhhccCCCCEEEeC
Confidence 233366788888764
No 155
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.40 E-value=2.6e-05 Score=64.64 Aligned_cols=86 Identities=19% Similarity=0.152 Sum_probs=49.8
Q ss_pred cCCCccEEEeccCCCCccCh--HHHhcCCcccEEEEeccccceEeecCccccccCCccccceeEeccccccccccccc--
Q 022501 31 LFQNLKSLEIVSDKSDNFSI--GFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGMLTQIKSLKLWELSNLLHIWEQC-- 106 (296)
Q Consensus 31 ~l~~L~~L~l~~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~-- 106 (296)
.+++|+.|+|++|.+..++. ..+..+++|+.|++++|.+..+..+..+. .+ +|+.|.+.+.+--..++...
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~----~l-~L~~L~L~~Npl~~~~~~~~~y 242 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIK----GL-KLEELWLDGNSLCDTFRDQSTY 242 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGT----TS-CCSEEECTTSTTGGGCSSHHHH
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcc----cC-CcceEEccCCcCccccCcchhH
Confidence 57778888887777765432 35567788888888877666553322211 13 77777777766433222100
Q ss_pred -CcccccCCCccEEEe
Q 022501 107 -YKLDSVFQNLETLEI 121 (296)
Q Consensus 107 -~~~~~~~~~L~~L~l 121 (296)
...+..+|+|+.|+=
T Consensus 243 ~~~il~~~P~L~~LDg 258 (267)
T 3rw6_A 243 ISAIRERFPKLLRLDG 258 (267)
T ss_dssp HHHHHHHCTTCCEESS
T ss_pred HHHHHHHCcccCeECC
Confidence 011456677776653
No 156
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.36 E-value=0.023 Score=49.23 Aligned_cols=54 Identities=13% Similarity=0.201 Sum_probs=30.9
Q ss_pred ccceEEEeeccCccccccCCCCCCcCCCccEEEeccCCCCccChHHHhcCCcccEEEEe
Q 022501 7 ANLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLR 65 (296)
Q Consensus 7 ~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 65 (296)
.+|+++.+.. .++.++...|. .+.+|+.+++.++ ...+....|.++ +|+++.+.
T Consensus 46 ~~i~~v~ip~-~vt~Ig~~aF~--~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~ 99 (379)
T 4h09_A 46 DRISEVRVNS-GITSIGEANFN--SCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGM 99 (379)
T ss_dssp GGCSEEEECT-TEEEECTTTTT--TCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEEC
T ss_pred cCCEEEEeCC-CccChHHHHhh--CCCCCCEEEeCCc-ceEechhhhcCC-CCceEECC
Confidence 4566666642 35555555566 6777777777433 334555555555 45555554
No 157
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=96.95 E-value=0.0001 Score=57.65 Aligned_cols=116 Identities=11% Similarity=-0.045 Sum_probs=59.7
Q ss_pred cCCCccEEEeccC-CCCccC----hHHHhcCCcccEEEEeccccceEeecCccccccCCccccceeEecccccccccccc
Q 022501 31 LFQNLKSLEIVSD-KSDNFS----IGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGMLTQIKSLKLWELSNLLHIWEQ 105 (296)
Q Consensus 31 ~l~~L~~L~l~~~-~~~~~~----~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~ 105 (296)
..++|++|++++| .+..-. ...+...++|++|++++|.+..-- ...+.......++|++|+++++.. ..-...
T Consensus 34 ~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g-~~~l~~~L~~n~~L~~L~L~~N~i-~~~g~~ 111 (185)
T 1io0_A 34 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPV-AFALAEMLKVNNTLKSLNVESNFI-SGSGIL 111 (185)
T ss_dssp TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHH-HHHHHHHHHHCSSCCEEECCSSCC-CHHHHH
T ss_pred cCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHH-HHHHHHHHHhCCCcCEEECcCCcC-CHHHHH
Confidence 5677777777776 555211 123445567777777777542210 011111222356777777776532 110000
Q ss_pred -cCcccccCCCccEEEe--ccCccccc-----cccCccccCCccEEEeccCc
Q 022501 106 -CYKLDSVFQNLETLEI--WWCNNLIN-----LVPSSASFENLTTLEVSYCQ 149 (296)
Q Consensus 106 -~~~~~~~~~~L~~L~l--~~~~~l~~-----~~~~~~~l~~L~~L~l~~c~ 149 (296)
....+...++|++|++ .++ .+++ +...+...++|++|+++++.
T Consensus 112 ~l~~~L~~n~~L~~L~L~~~~N-~i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 112 ALVEALQSNTSLIELRIDNQSQ-PLGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp HHHHGGGGCSSCCEEECCCCSS-CCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred HHHHHHHhCCCceEEEecCCCC-CCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 0011445567888888 544 3332 22233345678888887753
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=96.95 E-value=0.00037 Score=57.70 Aligned_cols=35 Identities=23% Similarity=0.145 Sum_probs=16.6
Q ss_pred cCCCccEEEeccCcccccc---ccCccccCCccEEEecc
Q 022501 112 VFQNLETLEIWWCNNLINL---VPSSASFENLTTLEVSY 147 (296)
Q Consensus 112 ~~~~L~~L~l~~~~~l~~~---~~~~~~l~~L~~L~l~~ 147 (296)
.+++|+.|+++++ .+..+ +..+..+++|+.|++++
T Consensus 168 ~l~~L~~L~Ls~N-~l~~l~~l~~~~~~l~~L~~L~Ls~ 205 (267)
T 3rw6_A 168 NIPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSG 205 (267)
T ss_dssp HCTTCCEEECTTS-CCCCCGGGTTHHHHSTTCCEEECTT
T ss_pred hCCCCCEEECCCC-CCCCCccchhHHhhCCCCCEEECCC
Confidence 3455666666553 23222 22233455555555554
No 159
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=96.56 E-value=0.00051 Score=53.58 Aligned_cols=120 Identities=15% Similarity=0.068 Sum_probs=65.1
Q ss_pred HHhcCCcccEEEEecc-ccceEeecCccccccCCccccceeEeccccccccccccc-CcccccCCCccEEEeccCccccc
Q 022501 52 FLQRFHNVERLKLRNS-SYKEIFSNGEVEKQAGMLTQIKSLKLWELSNLLHIWEQC-YKLDSVFQNLETLEIWWCNNLIN 129 (296)
Q Consensus 52 ~~~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~-~~~~~~~~~L~~L~l~~~~~l~~ 129 (296)
.+...++|++|++++| .+..- ....+.......++|++|+++++.. ..-.... ...+...++|++|++++|. +++
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~-g~~~l~~~L~~~~~L~~L~Ls~n~i-~~~g~~~l~~~L~~n~~L~~L~L~~N~-i~~ 107 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVP-TLKACAEALKTNTYVKKFSIVGTRS-NDPVAFALAEMLKVNNTLKSLNVESNF-ISG 107 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHH-HHHHHHHHHTTCCSCCEEECTTSCC-CHHHHHHHHHHHHHCSSCCEEECCSSC-CCH
T ss_pred HHhcCCCCCEEEecCCCCCCHH-HHHHHHHHHHhCCCcCEEECcCCCC-ChHHHHHHHHHHHhCCCcCEEECcCCc-CCH
Confidence 4556788888888877 54321 1111222233467888888887642 2110000 0013345678888888764 332
Q ss_pred -----cccCccccCCccEEEe--ccCcCccccCC---cccccCCCCccEEEEeCcc
Q 022501 130 -----LVPSSASFENLTTLEV--SYCQRLKNLVS---SSTAKSLVCLMKLRIDGCK 175 (296)
Q Consensus 130 -----~~~~~~~l~~L~~L~l--~~c~~l~~~~~---~~~~~~l~~L~~L~l~~~~ 175 (296)
+...+...+.|++|++ +++ .+++... ...+...++|++|++++|.
T Consensus 108 ~g~~~l~~~L~~n~~L~~L~L~~~~N-~i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 108 SGILALVEALQSNTSLIELRIDNQSQ-PLGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp HHHHHHHHGGGGCSSCCEEECCCCSS-CCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred HHHHHHHHHHHhCCCceEEEecCCCC-CCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 2334445567888888 443 4443211 0123345778888888765
No 160
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.74 E-value=0.012 Score=42.80 Aligned_cols=54 Identities=9% Similarity=0.185 Sum_probs=41.7
Q ss_pred EEEeeccCcc--ccccCCCCCCcCCCccEEEeccCCCCccChHHHhcCCcccEEEEecccc
Q 022501 11 ELKLSGKDIT--MICHDHLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSY 69 (296)
Q Consensus 11 ~L~L~~~~~~--~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 69 (296)
.++.++++++ .++ .. .-++|+.|+|++|.+..++.+.+..+++|++|++.+|.|
T Consensus 12 ~v~Cs~~~L~~~~vP-~~----lp~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 12 LVDCGRRGLTWASLP-TA----FPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp EEECCSSCCCTTTSC-SC----CCTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred EEEeCCCCCccccCC-CC----CCcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 4566666666 542 21 235899999999999999999999999999999998743
No 161
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=95.64 E-value=0.03 Score=48.43 Aligned_cols=125 Identities=10% Similarity=0.093 Sum_probs=82.2
Q ss_pred cccceEEEeeccCccccccCCCCCCcCCCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCccccccCCc
Q 022501 6 IANLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGML 85 (296)
Q Consensus 6 l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 85 (296)
+.+|+.+.+.. .+..++...+. .+.+|+.+.+..+ ...+....+.++.+|+.+.+... ++.+ +.. ....|
T Consensus 216 ~~~l~~i~~~~-~~~~i~~~~f~--~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i-~~~----aF~~c 285 (379)
T 4h09_A 216 GKNLKKITITS-GVTTLGDGAFY--GMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTV-PYL----LCSGC 285 (379)
T ss_dssp CSSCSEEECCT-TCCEECTTTTT--TCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEE-CTT----TTTTC
T ss_pred ccccceeeecc-ceeEEcccccc--CCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceec-ccc----ccccc
Confidence 45677776654 34555545566 7899999999654 44666667888999999998754 2332 111 12448
Q ss_pred cccceeEecccccccccccccCcccccCCCccEEEeccCcccccccc-CccccCCccEEEec
Q 022501 86 TQIKSLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCNNLINLVP-SSASFENLTTLEVS 146 (296)
Q Consensus 86 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-~~~~l~~L~~L~l~ 146 (296)
++|+.+.+.+. .++.++... +.++.+|+++.+.. .++.+.. .+.++.+|+.+.+.
T Consensus 286 ~~L~~i~l~~~-~i~~I~~~a---F~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~ip 341 (379)
T 4h09_A 286 SNLTKVVMDNS-AIETLEPRV---FMDCVKLSSVTLPT--ALKTIQVYAFKNCKALSTISYP 341 (379)
T ss_dssp TTCCEEEECCT-TCCEECTTT---TTTCTTCCEEECCT--TCCEECTTTTTTCTTCCCCCCC
T ss_pred ccccccccccc-ccceehhhh---hcCCCCCCEEEcCc--cccEEHHHHhhCCCCCCEEEEC
Confidence 89999988642 344554432 66788999999964 4565654 35567888888775
No 162
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.01 E-value=0.032 Score=40.55 Aligned_cols=38 Identities=18% Similarity=0.290 Sum_probs=33.9
Q ss_pred ccceEEEeeccCccccccCCCCCCcCCCccEEEeccCCCC
Q 022501 7 ANLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSD 46 (296)
Q Consensus 7 ~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 46 (296)
++|++|+|++|+++.+....+. .+++|+.|+|.+|+..
T Consensus 31 ~~l~~L~Ls~N~l~~l~~~~f~--~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 31 VDTTELVLTGNNLTALPPGLLD--ALPALRTAHLGANPWR 68 (130)
T ss_dssp TTCSEEECTTSCCSSCCTTTGG--GCTTCCEEECCSSCCB
T ss_pred cCCCEEECCCCcCCccChhhhh--hccccCEEEecCCCee
Confidence 3799999999999999877777 8999999999988765
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=74.85 E-value=0.89 Score=35.40 Aligned_cols=37 Identities=19% Similarity=0.238 Sum_probs=17.5
Q ss_pred CCccEEEeccC-CCCcc----ChHHHhcCCcccEEEEecccc
Q 022501 33 QNLKSLEIVSD-KSDNF----SIGFLQRFHNVERLKLRNSSY 69 (296)
Q Consensus 33 ~~L~~L~l~~~-~~~~~----~~~~~~~l~~L~~L~l~~~~~ 69 (296)
+.|+.|+++++ .+..- -...++.-+.|++|++.+|.+
T Consensus 41 ~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~i 82 (197)
T 1pgv_A 41 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAI 82 (197)
T ss_dssp SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCC
T ss_pred CCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCC
Confidence 55666666553 44311 111223334566666666543
No 164
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=59.91 E-value=2.6 Score=32.76 Aligned_cols=90 Identities=8% Similarity=0.083 Sum_probs=56.5
Q ss_pred cccceEEEeecc-CccccccCCCC--CCcCCCccEEEeccCCCCccC----hHHHhcCCcccEEEEeccccceEeecCcc
Q 022501 6 IANLEELKLSGK-DITMICHDHLP--KHLFQNLKSLEIVSDKSDNFS----IGFLQRFHNVERLKLRNSSYKEIFSNGEV 78 (296)
Q Consensus 6 l~~L~~L~L~~~-~~~~~~~~~~~--~~~l~~L~~L~l~~~~~~~~~----~~~~~~l~~L~~L~l~~~~~~~~~~~~~~ 78 (296)
-+.|++|+|+++ .+.+-+...+. ...=..|+.|+|++|.+.... ...+..-+.|++|++..|.+..-- ...+
T Consensus 40 n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~G-a~al 118 (197)
T 1pgv_A 40 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPEL-LARL 118 (197)
T ss_dssp CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHH-HHHH
T ss_pred CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHH-HHHH
Confidence 367999999984 66553211111 014478999999999988332 234455688999999998653221 1112
Q ss_pred ccccCCccccceeEeccc
Q 022501 79 EKQAGMLTQIKSLKLWEL 96 (296)
Q Consensus 79 ~~~~~~~~~L~~L~l~~~ 96 (296)
......-..|+.|.++++
T Consensus 119 a~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 119 LRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HHHTTTTCCCSEEECCCC
T ss_pred HHHHhhCCceeEEECCCC
Confidence 222333557999999864
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=44.96 E-value=18 Score=24.35 Aligned_cols=47 Identities=9% Similarity=0.120 Sum_probs=25.7
Q ss_pred CccccccCCCCCCcCCCccEEEeccCCCCccChHHHhcCCcccEEEEecc
Q 022501 18 DITMICHDHLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNS 67 (296)
Q Consensus 18 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 67 (296)
.+..++...|. .+.+|+.+.|-.. ...+....|.+|.+|+++.+.+.
T Consensus 7 ~vt~I~~~aF~--~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 7 PVVGMDKSLFA--GNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCSSCSCTTT--TCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred ccCEecHHHhc--CCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 34555555555 6667777766332 22333334556666666666543
Done!