BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022503
(296 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2IX5|A Chain A, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4 In Complex With Acetoacetyl-Coa
pdb|2IX5|B Chain B, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4 In Complex With Acetoacetyl-Coa
pdb|2IX5|C Chain C, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4 In Complex With Acetoacetyl-Coa
pdb|2IX5|D Chain D, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4 In Complex With Acetoacetyl-Coa
Length = 436
Score = 470 bits (1210), Expect = e-133, Method: Compositional matrix adjust.
Identities = 221/296 (74%), Positives = 254/296 (85%), Gaps = 3/296 (1%)
Query: 1 MLTIATSGSEAQKRKYLPSLAQLTTMASWALTEPNHGSDASALSTAATKVEGGWILEGQK 60
MLTIA GSEAQK KYLPSLAQL T+A WALTEP++GSDAS L T ATKVEGGW + GQK
Sbjct: 144 MLTIALCGSEAQKEKYLPSLAQLNTVACWALTEPDNGSDASGLGTTATKVEGGWKINGQK 203
Query: 61 RWIGNSTFADVLVVMARNTTTKKINAFIVKKDAPGLTATKIENKIGLRMLQNGDILFKKV 120
RWIGNSTFAD+L++ ARNTTT +IN FIVKKDAPGL ATKI NKIGLRM+QNGDIL + V
Sbjct: 204 RWIGNSTFADLLIIFARNTTTNQINGFIVKKDAPGLKATKIPNKIGLRMVQNGDILLQNV 263
Query: 121 FVPDEDRLPGFNSFQDTNIPLSVARVMVAWQTIGISIGVYDMCYRYLMERKQFGAPLAAF 180
FVPDEDRLPG NSFQDT+ L+V+RVMVAWQ IGIS+G+YDMC+RYL ERKQFGAPLAAF
Sbjct: 264 FVPDEDRLPGVNSFQDTSKVLAVSRVMVAWQPIGISMGIYDMCHRYLKERKQFGAPLAAF 323
Query: 181 QITQQKLAQMLGNIQAMNLVGWRLCRMCENGKMSLGQASLGKAWVSARARETVALGRELL 240
Q+ QQKL QMLGN+QAM L+GWRLC++ E G+M+ GQASLGKAW+S++ARET +LGRELL
Sbjct: 324 QLNQQKLVQMLGNVQAMFLMGWRLCKLYETGQMTPGQASLGKAWISSKARETASLGRELL 383
Query: 241 GGNGIVTDFLVGKAFCDFEPFHTGEGSYDINNLIAAREITGFASFKPTSSAQQSRL 296
GGNGI+ DFLV KAFCD EP +T EG+YDIN L+ RE+TG ASFKP A +SRL
Sbjct: 384 GGNGILADFLVAKAFCDLEPIYTYEGTYDINTLVTGREVTGIASFKP---ATRSRL 436
>pdb|2IX6|A Chain A, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4
pdb|2IX6|B Chain B, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4
pdb|2IX6|C Chain C, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4
pdb|2IX6|D Chain D, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4
pdb|2IX6|E Chain E, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4
pdb|2IX6|F Chain F, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4
Length = 449
Score = 470 bits (1210), Expect = e-133, Method: Compositional matrix adjust.
Identities = 221/296 (74%), Positives = 254/296 (85%), Gaps = 3/296 (1%)
Query: 1 MLTIATSGSEAQKRKYLPSLAQLTTMASWALTEPNHGSDASALSTAATKVEGGWILEGQK 60
MLTIA GSEAQK KYLPSLAQL T+A WALTEP++GSDAS L T ATKVEGGW + GQK
Sbjct: 144 MLTIALCGSEAQKEKYLPSLAQLNTVACWALTEPDNGSDASGLGTTATKVEGGWKINGQK 203
Query: 61 RWIGNSTFADVLVVMARNTTTKKINAFIVKKDAPGLTATKIENKIGLRMLQNGDILFKKV 120
RWIGNSTFAD+L++ ARNTTT +IN FIVKKDAPGL ATKI NKIGLRM+QNGDIL + V
Sbjct: 204 RWIGNSTFADLLIIFARNTTTNQINGFIVKKDAPGLKATKIPNKIGLRMVQNGDILLQNV 263
Query: 121 FVPDEDRLPGFNSFQDTNIPLSVARVMVAWQTIGISIGVYDMCYRYLMERKQFGAPLAAF 180
FVPDEDRLPG NSFQDT+ L+V+RVMVAWQ IGIS+G+YDMC+RYL ERKQFGAPLAAF
Sbjct: 264 FVPDEDRLPGVNSFQDTSKVLAVSRVMVAWQPIGISMGIYDMCHRYLKERKQFGAPLAAF 323
Query: 181 QITQQKLAQMLGNIQAMNLVGWRLCRMCENGKMSLGQASLGKAWVSARARETVALGRELL 240
Q+ QQKL QMLGN+QAM L+GWRLC++ E G+M+ GQASLGKAW+S++ARET +LGRELL
Sbjct: 324 QLNQQKLVQMLGNVQAMFLMGWRLCKLYETGQMTPGQASLGKAWISSKARETASLGRELL 383
Query: 241 GGNGIVTDFLVGKAFCDFEPFHTGEGSYDINNLIAAREITGFASFKPTSSAQQSRL 296
GGNGI+ DFLV KAFCD EP +T EG+YDIN L+ RE+TG ASFKP A +SRL
Sbjct: 384 GGNGILADFLVAKAFCDLEPIYTYEGTYDINTLVTGREVTGIASFKP---ATRSRL 436
>pdb|3EOM|A Chain A, 2.4 A Crystal Structure Of Native Glutaryl-Coa
Dehydrogenase From Burkholderia Pseudomallei
pdb|3EOM|B Chain B, 2.4 A Crystal Structure Of Native Glutaryl-Coa
Dehydrogenase From Burkholderia Pseudomallei
pdb|3EOM|C Chain C, 2.4 A Crystal Structure Of Native Glutaryl-Coa
Dehydrogenase From Burkholderia Pseudomallei
pdb|3EOM|D Chain D, 2.4 A Crystal Structure Of Native Glutaryl-Coa
Dehydrogenase From Burkholderia Pseudomallei
pdb|3EON|A Chain A, 2.55a Crystal Structure Of Native Glutaryl-Coa
Dehydrogenase From Burkholderia Pseudomallei In Complex
With A Small Molecule
pdb|3EON|B Chain B, 2.55a Crystal Structure Of Native Glutaryl-Coa
Dehydrogenase From Burkholderia Pseudomallei In Complex
With A Small Molecule
pdb|3EON|C Chain C, 2.55a Crystal Structure Of Native Glutaryl-Coa
Dehydrogenase From Burkholderia Pseudomallei In Complex
With A Small Molecule
pdb|3EON|D Chain D, 2.55a Crystal Structure Of Native Glutaryl-Coa
Dehydrogenase From Burkholderia Pseudomallei In Complex
With A Small Molecule
pdb|3II9|A Chain A, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei At 1.73 Angstrom
pdb|3II9|B Chain B, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei At 1.73 Angstrom
pdb|3II9|C Chain C, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei At 1.73 Angstrom
pdb|3II9|D Chain D, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei At 1.73 Angstrom
Length = 396
Score = 199 bits (505), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 116/288 (40%), Positives = 164/288 (56%), Gaps = 4/288 (1%)
Query: 1 MLTIATSGSEAQKRKYLPSLAQLTTMASWALTEPNHGSDASALSTAATKVEGGWILEGQK 60
M+ I GS+AQK KYLP LA + + LTEPNHGSD ++ T A KV GG+ L G K
Sbjct: 109 MVPIFEFGSDAQKEKYLPKLATGEWIGCFGLTEPNHGSDPGSMVTRARKVPGGYSLSGSK 168
Query: 61 RWIGNSTFADVLVVMAR--NTTTKKINAFIVKKDAPGLTATKIENKIGLRMLQNGDILFK 118
WI NS ADV VV A+ +I FI++K GL+A I K+GLR G+I+
Sbjct: 169 MWITNSPIADVFVVWAKLDEDGRDEIRGFILEKGCKGLSAPAIHGKVGLRASITGEIVLD 228
Query: 119 KVFVPDEDRLPGFNSFQDTNIPLSVARVMVAWQTIGISIGVYDMCYRYLMERKQFGAPLA 178
+ FVP+E+ LP + L+ AR +AW +G + + + +Y+++RKQFG PLA
Sbjct: 229 EAFVPEENILPHVKGLRGPFTCLNSARYGIAWGALGAAESCWHIARQYVLDRKQFGRPLA 288
Query: 179 AFQITQQKLAQMLGNIQAMNLVG-WRLCRMCENGKMSLGQASLGKAWVSARARETVALGR 237
A Q+ Q+KLA M I + L G RL RM + G ++ S+ K +A + L R
Sbjct: 289 ANQLIQKKLADMQTEI-TLGLQGVLRLGRMKDEGTAAVEITSIMKRNSCGKALDIARLAR 347
Query: 238 ELLGGNGIVTDFLVGKAFCDFEPFHTGEGSYDINNLIAAREITGFASF 285
++LGGNGI +F V + + E +T EG++DI+ LI R TG +F
Sbjct: 348 DMLGGNGISDEFGVARHLVNLEVVNTYEGTHDIHALILGRAQTGIQAF 395
>pdb|3GQT|A Chain A, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei With Fragment
(1,4-Dimethyl-1,2,3,4-
Tetrahydroquinoxalin-6-Yl)methylamine
pdb|3GQT|B Chain B, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei With Fragment
(1,4-Dimethyl-1,2,3,4-
Tetrahydroquinoxalin-6-Yl)methylamine
pdb|3GQT|C Chain C, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei With Fragment
(1,4-Dimethyl-1,2,3,4-
Tetrahydroquinoxalin-6-Yl)methylamine
pdb|3GQT|D Chain D, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei With Fragment
(1,4-Dimethyl-1,2,3,4-
Tetrahydroquinoxalin-6-Yl)methylamine
pdb|3GNC|A Chain A, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei With Fragment 6421
pdb|3GNC|B Chain B, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei With Fragment 6421
pdb|3GNC|C Chain C, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei With Fragment 6421
pdb|3GNC|D Chain D, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei With Fragment 6421
Length = 399
Score = 198 bits (504), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 116/288 (40%), Positives = 164/288 (56%), Gaps = 4/288 (1%)
Query: 1 MLTIATSGSEAQKRKYLPSLAQLTTMASWALTEPNHGSDASALSTAATKVEGGWILEGQK 60
M+ I GS+AQK KYLP LA + + LTEPNHGSD ++ T A KV GG+ L G K
Sbjct: 112 MVPIFEFGSDAQKEKYLPKLATGEWIGCFGLTEPNHGSDPGSMVTRARKVPGGYSLSGSK 171
Query: 61 RWIGNSTFADVLVVMAR--NTTTKKINAFIVKKDAPGLTATKIENKIGLRMLQNGDILFK 118
WI NS ADV VV A+ +I FI++K GL+A I K+GLR G+I+
Sbjct: 172 MWITNSPIADVFVVWAKLDEDGRDEIRGFILEKGCKGLSAPAIHGKVGLRASITGEIVLD 231
Query: 119 KVFVPDEDRLPGFNSFQDTNIPLSVARVMVAWQTIGISIGVYDMCYRYLMERKQFGAPLA 178
+ FVP+E+ LP + L+ AR +AW +G + + + +Y+++RKQFG PLA
Sbjct: 232 EAFVPEENILPHVKGLRGPFTCLNSARYGIAWGALGAAESCWHIARQYVLDRKQFGRPLA 291
Query: 179 AFQITQQKLAQMLGNIQAMNLVG-WRLCRMCENGKMSLGQASLGKAWVSARARETVALGR 237
A Q+ Q+KLA M I + L G RL RM + G ++ S+ K +A + L R
Sbjct: 292 ANQLIQKKLADMQTEI-TLGLQGVLRLGRMKDEGTAAVEITSIMKRNSCGKALDIARLAR 350
Query: 238 ELLGGNGIVTDFLVGKAFCDFEPFHTGEGSYDINNLIAAREITGFASF 285
++LGGNGI +F V + + E +T EG++DI+ LI R TG +F
Sbjct: 351 DMLGGNGISDEFGVARHLVNLEVVNTYEGTHDIHALILGRAQTGIQAF 398
>pdb|3D6B|A Chain A, 2.2 A Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei
pdb|3D6B|B Chain B, 2.2 A Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei
pdb|3D6B|C Chain C, 2.2 A Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei
pdb|3D6B|D Chain D, 2.2 A Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei
Length = 395
Score = 198 bits (504), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 116/288 (40%), Positives = 164/288 (56%), Gaps = 4/288 (1%)
Query: 1 MLTIATSGSEAQKRKYLPSLAQLTTMASWALTEPNHGSDASALSTAATKVEGGWILEGQK 60
M+ I GS+AQK KYLP LA + + LTEPNHGSD ++ T A KV GG+ L G K
Sbjct: 108 MVPIFEFGSDAQKEKYLPKLATGEWIGCFGLTEPNHGSDPGSMVTRARKVPGGYSLSGSK 167
Query: 61 RWIGNSTFADVLVVMAR--NTTTKKINAFIVKKDAPGLTATKIENKIGLRMLQNGDILFK 118
WI NS ADV VV A+ +I FI++K GL+A I K+GLR G+I+
Sbjct: 168 MWITNSPIADVFVVWAKLDEDGRDEIRGFILEKGCKGLSAPAIHGKVGLRASITGEIVLD 227
Query: 119 KVFVPDEDRLPGFNSFQDTNIPLSVARVMVAWQTIGISIGVYDMCYRYLMERKQFGAPLA 178
+ FVP+E+ LP + L+ AR +AW +G + + + +Y+++RKQFG PLA
Sbjct: 228 EAFVPEENILPHVKGLRGPFTCLNSARYGIAWGALGAAESCWHIARQYVLDRKQFGRPLA 287
Query: 179 AFQITQQKLAQMLGNIQAMNLVG-WRLCRMCENGKMSLGQASLGKAWVSARARETVALGR 237
A Q+ Q+KLA M I + L G RL RM + G ++ S+ K +A + L R
Sbjct: 288 ANQLIQKKLADMQTEI-TLGLQGVLRLGRMKDEGTAAVEITSIMKRNSCGKALDIARLAR 346
Query: 238 ELLGGNGIVTDFLVGKAFCDFEPFHTGEGSYDINNLIAAREITGFASF 285
++LGGNGI +F V + + E +T EG++DI+ LI R TG +F
Sbjct: 347 DMLGGNGISDEFGVARHLVNLEVVNTYEGTHDIHALILGRAQTGIQAF 394
>pdb|1SIR|A Chain A, The Crystal Structure And Mechanism Of Human Glutaryl-Coa
Dehydrogenase
pdb|2R0N|A Chain A, The Effect Of A Glu370asp Mutation In Glutaryl-Coa
Dehydrogenase On Proton Transfer To The Dienolate
Intermediate
Length = 394
Score = 167 bits (422), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 107/287 (37%), Positives = 151/287 (52%), Gaps = 3/287 (1%)
Query: 1 MLTIATSGSEAQKRKYLPSLAQLTTMASWALTEPNHGSDASALSTAA--TKVEGGWILEG 58
M I GSE Q++KYLP LA+ + + LTEPN GSD S++ T A + L G
Sbjct: 105 MHPIYAYGSEEQRQKYLPQLAKGELLGCFGLTEPNSGSDPSSMETRAHYNSSNKSYTLNG 164
Query: 59 QKRWIGNSTFADVLVVMARNTTTKKINAFIVKKDAPGLTATKIENKIGLRMLQNGDILFK 118
K WI NS AD+ VV AR I F+++K GL+A +I+ K LR G I+
Sbjct: 165 TKTWITNSPMADLFVVWAR-CEDGCIRGFLLEKGMRGLSAPRIQGKFSLRASATGMIIMD 223
Query: 119 KVFVPDEDRLPGFNSFQDTNIPLSVARVMVAWQTIGISIGVYDMCYRYLMERKQFGAPLA 178
V VP+E+ LPG +S L+ AR +AW +G S +Y ++R QFG PLA
Sbjct: 224 GVEVPEENVLPGASSLGGPFGCLNNARYGIAWGVLGASEFCLHTARQYALDRMQFGVPLA 283
Query: 179 AFQITQQKLAQMLGNIQAMNLVGWRLCRMCENGKMSLGQASLGKAWVSARARETVALGRE 238
Q+ Q+KLA ML I +L R+ + K + SL K +A + R+
Sbjct: 284 RNQLIQKKLADMLTEITLGLHACLQLGRLKDQDKAAPEMVSLLKRNNCGKALDIARQARD 343
Query: 239 LLGGNGIVTDFLVGKAFCDFEPFHTGEGSYDINNLIAAREITGFASF 285
+LGGNGI ++ V + + E +T EG++DI+ LI R ITG +F
Sbjct: 344 MLGGNGISDEYHVIRHAMNLEAVNTYEGTHDIHALILGRAITGIQAF 390
>pdb|1SIQ|A Chain A, The Crystal Structure And Mechanism Of Human Glutaryl-Coa
Dehydrogenase
Length = 392
Score = 166 bits (421), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 107/287 (37%), Positives = 151/287 (52%), Gaps = 3/287 (1%)
Query: 1 MLTIATSGSEAQKRKYLPSLAQLTTMASWALTEPNHGSDASALSTAA--TKVEGGWILEG 58
M I GSE Q++KYLP LA+ + + LTEPN GSD S++ T A + L G
Sbjct: 103 MHPIYAYGSEEQRQKYLPQLAKGELLGCFGLTEPNSGSDPSSMETRAHYNSSNKSYTLNG 162
Query: 59 QKRWIGNSTFADVLVVMARNTTTKKINAFIVKKDAPGLTATKIENKIGLRMLQNGDILFK 118
K WI NS AD+ VV AR I F+++K GL+A +I+ K LR G I+
Sbjct: 163 TKTWITNSPMADLFVVWAR-CEDGCIRGFLLEKGMRGLSAPRIQGKFSLRASATGMIIMD 221
Query: 119 KVFVPDEDRLPGFNSFQDTNIPLSVARVMVAWQTIGISIGVYDMCYRYLMERKQFGAPLA 178
V VP+E+ LPG +S L+ AR +AW +G S +Y ++R QFG PLA
Sbjct: 222 GVEVPEENVLPGASSLGGPFGCLNNARYGIAWGVLGASEFCLHTARQYALDRMQFGVPLA 281
Query: 179 AFQITQQKLAQMLGNIQAMNLVGWRLCRMCENGKMSLGQASLGKAWVSARARETVALGRE 238
Q+ Q+KLA ML I +L R+ + K + SL K +A + R+
Sbjct: 282 RNQLIQKKLADMLTEITLGLHACLQLGRLKDQDKAAPEMVSLLKRNNCGKALDIARQARD 341
Query: 239 LLGGNGIVTDFLVGKAFCDFEPFHTGEGSYDINNLIAAREITGFASF 285
+LGGNGI ++ V + + E +T EG++DI+ LI R ITG +F
Sbjct: 342 MLGGNGISDEYHVIRHAMNLEAVNTYEGTHDIHALILGRAITGIQAF 388
>pdb|3SF6|A Chain A, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Mycobacterium Smegmatis
Length = 403
Score = 166 bits (421), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 100/286 (34%), Positives = 148/286 (51%), Gaps = 2/286 (0%)
Query: 1 MLTIATSGSEAQKRKYLPSLAQLTTMASWALTEPNHGSDASALSTAATKVEGGWILEGQK 60
M I GS+ QK ++LP +A + + LTEP+HGSD + + T AT+ WIL G K
Sbjct: 120 MYAIHAFGSDEQKDQWLPDMASGHRIGCFGLTEPDHGSDPAGMRTRATRSGDDWILTGTK 179
Query: 61 RWIGNSTFADVLVVMARNTTTKKINAFIVKKDAPGLTATKIENKIGLRMLQNGDILFKKV 120
WI N + ADV VV AR T + I F+V D PG TA I++K+ LR +++ V
Sbjct: 180 MWITNGSVADVAVVWAR--TDEGIRGFVVPTDTPGFTANTIKSKMSLRASVTSELVLDGV 237
Query: 121 FVPDEDRLPGFNSFQDTNIPLSVARVMVAWQTIGISIGVYDMCYRYLMERKQFGAPLAAF 180
+PD RLPG S L+ AR + + +G + + Y R+QF P+ F
Sbjct: 238 RLPDSARLPGATSLGAPLRCLNEARFGIVFGALGAARDCLETALAYACSREQFDRPIGGF 297
Query: 181 QITQQKLAQMLGNIQAMNLVGWRLCRMCENGKMSLGQASLGKAWVSARARETVALGRELL 240
Q+TQQKLA M L+ L R + G+++ Q SLGK A E R +L
Sbjct: 298 QLTQQKLADMTLEYGKGFLLALHLGRQKDAGELAPEQVSLGKLNNVREAIEIARTARTVL 357
Query: 241 GGNGIVTDFLVGKAFCDFEPFHTGEGSYDINNLIAAREITGFASFK 286
G +GI ++ V + + E T EG+ +++ LI + +TG +F+
Sbjct: 358 GASGITGEYPVMRHANNLESVLTYEGTSEMHTLIIGQALTGVGAFR 403
>pdb|2R0M|A Chain A, The Effect Of A Glu370asp Mutation In Glutaryl-Coa
Dehydrogenase On Proton Transfer To The Dienolate
Intermediate
Length = 394
Score = 165 bits (418), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 106/287 (36%), Positives = 151/287 (52%), Gaps = 3/287 (1%)
Query: 1 MLTIATSGSEAQKRKYLPSLAQLTTMASWALTEPNHGSDASALSTAA--TKVEGGWILEG 58
M I GSE Q++KYLP LA+ + + LTEPN GSD S++ T A + L G
Sbjct: 105 MHPIYAYGSEEQRQKYLPQLAKGELLGCFGLTEPNSGSDPSSMETRAHYNSSNKSYTLNG 164
Query: 59 QKRWIGNSTFADVLVVMARNTTTKKINAFIVKKDAPGLTATKIENKIGLRMLQNGDILFK 118
K WI NS AD+ VV AR I F+++K GL+A +I+ K LR G I+
Sbjct: 165 TKTWITNSPMADLFVVWAR-CEDGCIRGFLLEKGMRGLSAPRIQGKFSLRASATGMIIMD 223
Query: 119 KVFVPDEDRLPGFNSFQDTNIPLSVARVMVAWQTIGISIGVYDMCYRYLMERKQFGAPLA 178
V VP+E+ LPG +S L+ AR +AW +G S +Y ++R QFG PLA
Sbjct: 224 GVEVPEENVLPGASSLGGPFGCLNNARYGIAWGVLGASEFCLHTARQYALDRMQFGVPLA 283
Query: 179 AFQITQQKLAQMLGNIQAMNLVGWRLCRMCENGKMSLGQASLGKAWVSARARETVALGRE 238
Q+ Q+KLA ML I +L R+ + K + SL K +A + R+
Sbjct: 284 RNQLIQKKLADMLTEITLGLHACLQLGRLKDQDKAAPEMVSLLKRNNCGKALDIARQARD 343
Query: 239 LLGGNGIVTDFLVGKAFCDFEPFHTGEGSYDINNLIAAREITGFASF 285
+LGGNGI ++ V + + E +T +G++DI+ LI R ITG +F
Sbjct: 344 MLGGNGISDEYHVIRHAMNLEAVNTYDGTHDIHALILGRAITGIQAF 390
>pdb|2EBA|A Chain A, Crystal Structure Of The Putative Glutaryl-coa
Dehydrogenase From Thermus Thermophilus
pdb|2EBA|C Chain C, Crystal Structure Of The Putative Glutaryl-coa
Dehydrogenase From Thermus Thermophilus
pdb|2EBA|D Chain D, Crystal Structure Of The Putative Glutaryl-coa
Dehydrogenase From Thermus Thermophilus
pdb|2EBA|E Chain E, Crystal Structure Of The Putative Glutaryl-coa
Dehydrogenase From Thermus Thermophilus
pdb|2EBA|F Chain F, Crystal Structure Of The Putative Glutaryl-coa
Dehydrogenase From Thermus Thermophilus
pdb|2EBA|G Chain G, Crystal Structure Of The Putative Glutaryl-coa
Dehydrogenase From Thermus Thermophilus
pdb|2EBA|H Chain H, Crystal Structure Of The Putative Glutaryl-coa
Dehydrogenase From Thermus Thermophilus
pdb|2EBA|I Chain I, Crystal Structure Of The Putative Glutaryl-coa
Dehydrogenase From Thermus Thermophilus
Length = 385
Score = 154 bits (390), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 97/286 (33%), Positives = 153/286 (53%), Gaps = 2/286 (0%)
Query: 1 MLTIATSGSEAQKRKYLPSLAQLTTMASWALTEPNHGSDASA-LSTAATKVEGGWILEGQ 59
M I GSE QKR++LP LA+ + + LTEP+ GSD + T A + W+L G
Sbjct: 101 MYPIYAYGSEEQKREFLPKLARGEMVGCFGLTEPDGGSDPYGNMKTRARREGDTWVLNGT 160
Query: 60 KRWIGNSTFADVLVVMARNTTTKKINAFIVKKDAPGLTATKIENKIGLRMLQNGDILFKK 119
K WI N A + V+ A++ + + F+V D PG A +++ K+ LR +++ ++
Sbjct: 161 KMWITNGNLAHLAVIWAKDEGGE-VLGFLVPTDTPGFQAREVKRKMSLRASVTSELVLEE 219
Query: 120 VFVPDEDRLPGFNSFQDTNIPLSVARVMVAWQTIGISIGVYDMCYRYLMERKQFGAPLAA 179
V VP+ RLP + L+ AR +AW +G VY+ + R FG PLA
Sbjct: 220 VRVPESLRLPKALGLKAPLSCLTQARFGIAWGAMGALEAVYEEAVAFAKSRSTFGEPLAK 279
Query: 180 FQITQQKLAQMLGNIQAMNLVGWRLCRMCENGKMSLGQASLGKAWVSARARETVALGREL 239
Q+ Q KLA+ML L+ WRL R+ + GK++ Q SL K +A + + R++
Sbjct: 280 KQLVQAKLAEMLAWHTEGLLLAWRLARLKDEGKLTPAQVSLAKRQNVWKALQAARMARDI 339
Query: 240 LGGNGIVTDFLVGKAFCDFEPFHTGEGSYDINNLIAAREITGFASF 285
LGG+GI ++ + + E +T EG++D++ L+ REITG +F
Sbjct: 340 LGGSGITLEYHAIRHMLNLETVYTYEGTHDVHTLVLGREITGLNAF 385
>pdb|2DVL|A Chain A, Crystal Structure Of Project Tt0160 From Thermus
Thermophilus Hb8
pdb|2DVL|B Chain B, Crystal Structure Of Project Tt0160 From Thermus
Thermophilus Hb8
Length = 372
Score = 145 bits (366), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 100/273 (36%), Positives = 147/273 (53%), Gaps = 3/273 (1%)
Query: 8 GSEAQKRKYLPSLAQLTTMASWALTEPNHGSDASALSTAATKVEGGWILEGQKRWIGNST 67
GSEAQKR+YL LA+ + ++ LTEP GSDA +L A +V+GG++L G K WI ++
Sbjct: 100 GSEAQKRRYLVPLARGEWIGAFCLTEPQAGSDAKSLRAEARRVKGGFVLNGVKSWITSAG 159
Query: 68 FADVLVVMARNTTTKKINAFIVKKDAPGLTATKIENKIGLRMLQNGDILFKKVFVPDEDR 127
A + VVMAR T K I+AF+V+K PGL+ + E K+GL ++ ++VFVP+E+
Sbjct: 160 HAHLYVVMAR--TEKGISAFLVEKGTPGLSFGRPEEKMGLHAAHTAEVRLEEVFVPEENL 217
Query: 128 L-PGFNSFQDTNIPLSVARVMVAWQTIGISIGVYDMCYRYLMERKQFGAPLAAFQITQQK 186
L L RV VA Q +GI+ G +++ Y ER+QFG L Q K
Sbjct: 218 LGEEGRGLAYALAGLDSGRVGVAAQAVGIARGAFEIAKAYAEEREQFGKKLKEHQAIAFK 277
Query: 187 LAQMLGNIQAMNLVGWRLCRMCENGKMSLGQASLGKAWVSARARETVALGRELLGGNGIV 246
+A M I A + R + G+ +AS K + SA A E ++LGG G
Sbjct: 278 IADMHVKIAAARALVLEAARKKDRGERFTLEASAAKLFASAAAVEVTREAVQVLGGYGYH 337
Query: 247 TDFLVGKAFCDFEPFHTGEGSYDINNLIAAREI 279
D+ V + + D + EG+ +I L+ ARE+
Sbjct: 338 RDYRVERYYRDAKVTEIYEGTSEIQRLVIAREL 370
>pdb|1UKW|A Chain A, Crystal Structure Of Medium-Chain Acyl-Coa Dehydrogenase
From Thermus Thermophilus Hb8
pdb|1UKW|B Chain B, Crystal Structure Of Medium-Chain Acyl-Coa Dehydrogenase
From Thermus Thermophilus Hb8
Length = 379
Score = 140 bits (353), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 93/280 (33%), Positives = 143/280 (51%), Gaps = 10/280 (3%)
Query: 7 SGSEAQKRKYLPSLAQLTTMASWALTEPNHGSDASALSTAATKVEGGWILEGQKRWIGNS 66
+G+E QK ++L L + +A++AL+EP +GSDA+AL T A + ++L G K WI N
Sbjct: 100 AGTEEQKERFLRPLTEKPALAAFALSEPGNGSDAAALKTRAIRQGDHYVLNGTKMWISNG 159
Query: 67 TFADVLVVMAR---NTTTKKINAFIVKKDAPGLTATKIENKIGLRMLQNGDILFKKVFVP 123
A+ +VV A K + A +V++ PG A KI K+G R +++F+ V VP
Sbjct: 160 GEAEWVVVFATVNPELRHKGVVALVVERGTPGFKAIKIHGKMGQRASGTYELVFEDVKVP 219
Query: 124 DEDRL----PGFNSFQDTNIPLSVARVMVAWQTIGISIGVYDMCYRYLMERKQFGAPLAA 179
E+RL GF T L+ R+ VA ++G++ D +Y ER+ FG P+A
Sbjct: 220 VENRLGEEGEGFKIAMQT---LNKTRIPVAAGSVGVARRALDEARKYAKEREAFGEPIAN 276
Query: 180 FQITQQKLAQMLGNIQAMNLVGWRLCRMCENGKMSLGQASLGKAWVSARARETVALGREL 239
FQ Q KL ML I+ + + + + G +++ KA+ S A E ++
Sbjct: 277 FQAIQFKLVDMLIGIETARMYTYYAAWLADQGLPHAHASAIAKAYASEIAFEAANQAIQI 336
Query: 240 LGGNGIVTDFLVGKAFCDFEPFHTGEGSYDINNLIAAREI 279
GG G V +F V K D + EG+ +I LI AR I
Sbjct: 337 HGGYGYVREFPVEKLLRDVKLNQIYEGTNEIQRLIIARHI 376
>pdb|2JIF|A Chain A, Structure Of Human Short-Branched Chain Acyl-Coa
Dehydrogenase (Acadsb)
pdb|2JIF|B Chain B, Structure Of Human Short-Branched Chain Acyl-Coa
Dehydrogenase (Acadsb)
pdb|2JIF|C Chain C, Structure Of Human Short-Branched Chain Acyl-Coa
Dehydrogenase (Acadsb)
pdb|2JIF|D Chain D, Structure Of Human Short-Branched Chain Acyl-Coa
Dehydrogenase (Acadsb)
Length = 404
Score = 139 bits (351), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 97/282 (34%), Positives = 147/282 (52%), Gaps = 9/282 (3%)
Query: 4 IATSGSEAQKRKYLPSLAQLTT--MASWALTEPNHGSDASALSTAATKVEGGWILEGQKR 61
I G+E QK YLP QLTT + S+ L+E GSD+ AL T A K ++L G K
Sbjct: 122 IRKHGTEEQKATYLP---QLTTEKVGSFCLSEAGAGSDSFALKTRADKEGDYYVLNGSKM 178
Query: 62 WIGNSTFADVLVVMARNTTT---KKINAFIVKKDAPGLTATKIENKIGLRMLQNGDILFK 118
WI ++ A + +VMA T K I +F+V +D PGL K ENK+GLR + F+
Sbjct: 179 WISSAEHAGLFLVMANVDPTIGYKGITSFLVDRDTPGLHIGKPENKLGLRASSTCPLTFE 238
Query: 119 KVFVPDEDRLPGF-NSFQDTNIPLSVARVMVAWQTIGISIGVYDMCYRYLMERKQFGAPL 177
V VP+ + L + ++ L+ R+ +A Q +G++ G +D Y+ ER QFG L
Sbjct: 239 NVKVPEANILGQIGHGYKYAIGSLNEGRIGIAAQMLGLAQGCFDYTIPYIKERIQFGKRL 298
Query: 178 AAFQITQQKLAQMLGNIQAMNLVGWRLCRMCENGKMSLGQASLGKAWVSARARETVALGR 237
FQ Q ++A + ++A L+ + R+ E GK + +AS+ K + S A +T +
Sbjct: 299 FDFQGLQHQVAHVATQLEAARLLTYNAARLLEAGKPFIKEASMAKYYASEIAGQTTSKCI 358
Query: 238 ELLGGNGIVTDFLVGKAFCDFEPFHTGEGSYDINNLIAAREI 279
E +GG G D+ V K F D + EG+ +I A+ I
Sbjct: 359 EWMGGVGYTKDYPVEKYFRDAKIGTIYEGASNIQLNTIAKHI 400
>pdb|3SWO|A Chain A, Crystal Structure Of A Glutaryl-Coa Dehydrogenase From
Mycobacterium Smegmatis In Complex With Fadh2
pdb|3SWO|B Chain B, Crystal Structure Of A Glutaryl-Coa Dehydrogenase From
Mycobacterium Smegmatis In Complex With Fadh2
pdb|3SWO|C Chain C, Crystal Structure Of A Glutaryl-Coa Dehydrogenase From
Mycobacterium Smegmatis In Complex With Fadh2
pdb|3SWO|D Chain D, Crystal Structure Of A Glutaryl-Coa Dehydrogenase From
Mycobacterium Smegmatis In Complex With Fadh2
Length = 399
Score = 138 bits (348), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 93/289 (32%), Positives = 143/289 (49%), Gaps = 8/289 (2%)
Query: 1 MLTIATSGSEAQKRKYLPSLAQLTTMASWALTEPNHGSDASALSTAATKVEGGWILEGQK 60
M +I GSE QK ++LP LA + + LTEP+ GS+ + + T A + WIL G K
Sbjct: 115 MFSIYRYGSEEQKNEWLPRLAAGDAIGCFGLTEPDFGSNPAGMRTRARRDGSDWILNGTK 174
Query: 61 RWIGNSTFADVLVVMARNTTTKKINAFIVKKDAPGLTATKIENKIGLRMLQNGDILFKKV 120
WI N ADV V A+ T I F+V D PG TA +I K+ LR +++ V
Sbjct: 175 MWITNGNLADVATVWAQ--TDDGIRGFLVPTDTPGFTANEIHRKLSLRASVTSELVLDNV 232
Query: 121 FVPDEDRLPGFNSFQDTNIPLSVARVMVAWQTIGISIGVYDMCYRYLMERKQFGAPLAAF 180
+P +LP L+ AR + + +G + + Y R+ F PL+ +
Sbjct: 233 RLPASAQLPLAEGLSAPLSCLNEARFGIVFGALGAARDSLETTIAYTQSREVFDKPLSNY 292
Query: 181 QITQQKLAQMLGNIQAMNLVGWRLCRMCENGKMSLGQASLGKAWVSARARETVALGRE-- 238
Q+TQ+KLA M + L+ L R+ + + Q SLGK RE +A+ RE
Sbjct: 293 QLTQEKLANMTVELGKGMLLAIHLGRIKDAEGVRPEQISLGKL---NNVREAIAIARECR 349
Query: 239 -LLGGNGIVTDFLVGKAFCDFEPFHTGEGSYDINNLIAAREITGFASFK 286
LLGG+GI ++ + + E T EG+ +++ L + +TG A+F+
Sbjct: 350 TLLGGSGITLEYSPLRHANNLESVLTYEGTSEMHLLSIGKALTGKAAFR 398
>pdb|1JQI|A Chain A, Crystal Structure Of Rat Short Chain Acyl-Coa
Dehydrogenase Complexed With Acetoacetyl-Coa
pdb|1JQI|B Chain B, Crystal Structure Of Rat Short Chain Acyl-Coa
Dehydrogenase Complexed With Acetoacetyl-Coa
Length = 388
Score = 137 bits (345), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 90/274 (32%), Positives = 137/274 (50%), Gaps = 6/274 (2%)
Query: 8 GSEAQKRKYLPSLAQLTTMASWALTEPNHGSDASALSTAATKVEGGWILEGQKRWIGNST 67
GS QK++++ + +AL+EP +GSDA A ST A + W+L G K WI NS
Sbjct: 107 GSSQQKQQWITPFTNGDKIGCFALSEPGNGSDAGAASTTAREEGDSWVLNGTKAWITNSW 166
Query: 68 FADVLVVMA---RNTTTKKINAFIVKKDAPGLTATKIENKIGLRMLQNGDILFKKVFVPD 124
A VV A R+ K I+AF+V PGLT K E+K+G+R +++F+ +P
Sbjct: 167 EASATVVFASTDRSRQNKGISAFLVPMPTPGLTLGKKEDKLGIRASSTANLIFEDCRIPK 226
Query: 125 EDRL--PGFNSFQDTNIPLSVARVMVAWQTIGISIGVYDMCYRYLMERKQFGAPLAAFQI 182
E+ L PG F+ L + R+ +A Q +GI+ D +Y R FGAPL Q
Sbjct: 227 ENLLGEPGMG-FKIAMQTLDMGRIGIASQALGIAQASLDCAVKYAENRHAFGAPLTKLQN 285
Query: 183 TQQKLAQMLGNIQAMNLVGWRLCRMCENGKMSLGQASLGKAWVSARARETVALGRELLGG 242
Q KLA M +++ L+ WR + +N K ++++ K S A ++LGG
Sbjct: 286 IQFKLADMALALESARLLTWRAAMLKDNKKPFTKESAMAKLAASEAATAISHQAIQILGG 345
Query: 243 NGIVTDFLVGKAFCDFEPFHTGEGSYDINNLIAA 276
G VT+ + + D EG+ +I L+ A
Sbjct: 346 MGYVTEMPAERYYRDARITEIYEGTSEIQRLVIA 379
>pdb|1IVH|A Chain A, Structure Of Human Isovaleryl-coa Dehydrogenase At 2.6
Angstroms Resolution: Structural Basis For Substrate
Specificity
pdb|1IVH|B Chain B, Structure Of Human Isovaleryl-coa Dehydrogenase At 2.6
Angstroms Resolution: Structural Basis For Substrate
Specificity
pdb|1IVH|C Chain C, Structure Of Human Isovaleryl-coa Dehydrogenase At 2.6
Angstroms Resolution: Structural Basis For Substrate
Specificity
pdb|1IVH|D Chain D, Structure Of Human Isovaleryl-coa Dehydrogenase At 2.6
Angstroms Resolution: Structural Basis For Substrate
Specificity
Length = 394
Score = 137 bits (344), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 87/281 (30%), Positives = 141/281 (50%), Gaps = 8/281 (2%)
Query: 4 IATSGSEAQKRKYLPSLAQLTTMASWALTEPNHGSDASALSTAATKVEGGWILEGQKRWI 63
+ +G+EAQK KYLP L + + A++EPN GSD ++ A K +IL G K WI
Sbjct: 108 LVRNGNEAQKEKYLPKLISGEYIGALAMSEPNAGSDVVSMKLKAEKKGNHYILNGNKFWI 167
Query: 64 GNSTFADVLVVMARNT-----TTKKINAFIVKKDAPGLTATKIENKIGLRMLQNGDILFK 118
N ADVL+V A+ ++ I AFIV+K PG + +K +K+G+R +++F+
Sbjct: 168 TNGPDADVLIVYAKTDLAAVPASRGITAFIVEKGMPGFSTSKKLDKLGMRGSNTCELIFE 227
Query: 119 KVFVPDEDRLPGFNSFQDTNIP-LSVARVMVAWQTIGISIGVYDMCYRYLMERKQFGAPL 177
+P + L N + L + R+++A +G+ V D YL R+ FG +
Sbjct: 228 DCKIPAANILGHENKGVYVLMSGLDLERLVLAGGPLGLMQAVLDHTIPYLHVREAFGQKI 287
Query: 178 AAFQITQQKLAQMLGNIQAMNLVGWRLCRMCENGKMSLGQASLGKAWVSARARETVAL-G 236
FQ+ Q K+A M + A + + + C+ G + + G SA VAL G
Sbjct: 288 GHFQLMQGKMADMYTRLMACRQYVYNVAKACDEGHCTAKDCA-GVILYSAECATQVALDG 346
Query: 237 RELLGGNGIVTDFLVGKAFCDFEPFHTGEGSYDINNLIAAR 277
+ GGNG + DF +G+ D + + G G+ ++ L+ R
Sbjct: 347 IQCFGGNGYINDFPMGRFLRDAKLYEIGAGTSEVRRLVIGR 387
>pdb|2VIG|A Chain A, Crystal Structure Of Human Short-Chain Acyl Coa
Dehydrogenase
pdb|2VIG|B Chain B, Crystal Structure Of Human Short-Chain Acyl Coa
Dehydrogenase
pdb|2VIG|C Chain C, Crystal Structure Of Human Short-Chain Acyl Coa
Dehydrogenase
pdb|2VIG|D Chain D, Crystal Structure Of Human Short-Chain Acyl Coa
Dehydrogenase
pdb|2VIG|E Chain E, Crystal Structure Of Human Short-Chain Acyl Coa
Dehydrogenase
pdb|2VIG|F Chain F, Crystal Structure Of Human Short-Chain Acyl Coa
Dehydrogenase
pdb|2VIG|G Chain G, Crystal Structure Of Human Short-Chain Acyl Coa
Dehydrogenase
pdb|2VIG|H Chain H, Crystal Structure Of Human Short-Chain Acyl Coa
Dehydrogenase
Length = 391
Score = 134 bits (337), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 89/274 (32%), Positives = 135/274 (49%), Gaps = 6/274 (2%)
Query: 8 GSEAQKRKYLPSLAQLTTMASWALTEPNHGSDASALSTAATKVEGGWILEGQKRWIGNST 67
GS+ QK+ ++ + +AL+EP +GSDA A ST A W+L G K WI N+
Sbjct: 103 GSKEQKQAWVTPFTSGDKIGCFALSEPGNGSDAGAASTTARAEGDSWVLNGTKAWITNAW 162
Query: 68 FADVLVVMA---RNTTTKKINAFIVKKDAPGLTATKIENKIGLRMLQNGDILFKKVFVPD 124
A VV A R K I+AF+V PGLT K E+K+G+R +++F+ +P
Sbjct: 163 EASAAVVFASTDRALQNKSISAFLVPMPTPGLTLGKKEDKLGIRGSSTANLIFEDCRIPK 222
Query: 125 EDRL--PGFNSFQDTNIPLSVARVMVAWQTIGISIGVYDMCYRYLMERKQFGAPLAAFQI 182
+ L PG F+ L + R+ +A Q +GI+ D Y R FGAPL Q+
Sbjct: 223 DSILGEPGMG-FKIAMQTLDMGRIGIASQALGIAQTALDCAVNYAENRMAFGAPLTKLQV 281
Query: 183 TQQKLAQMLGNIQAMNLVGWRLCRMCENGKMSLGQASLGKAWVSARARETVALGRELLGG 242
Q KLA M +++ L+ WR + +N K + +A++ K S A ++LGG
Sbjct: 282 IQFKLADMALALESARLLTWRAAMLKDNKKPFIKEAAMAKLAASEAATAISHQAIQILGG 341
Query: 243 NGIVTDFLVGKAFCDFEPFHTGEGSYDINNLIAA 276
G VT+ + + D EG+ +I L+ A
Sbjct: 342 MGYVTEMPAERHYRDARITEIYEGTSEIQRLVIA 375
>pdb|3PFD|A Chain A, Crystal Structure Of An Acyl-Coa Dehydrogenase From
Mycobacterium Thermoresistibile Bound To Reduced Flavin
Adenine Dinucleotide Solved By Combined Iodide Ion Sad
Mr
pdb|3PFD|B Chain B, Crystal Structure Of An Acyl-Coa Dehydrogenase From
Mycobacterium Thermoresistibile Bound To Reduced Flavin
Adenine Dinucleotide Solved By Combined Iodide Ion Sad
Mr
pdb|3PFD|C Chain C, Crystal Structure Of An Acyl-Coa Dehydrogenase From
Mycobacterium Thermoresistibile Bound To Reduced Flavin
Adenine Dinucleotide Solved By Combined Iodide Ion Sad
Mr
pdb|3PFD|D Chain D, Crystal Structure Of An Acyl-Coa Dehydrogenase From
Mycobacterium Thermoresistibile Bound To Reduced Flavin
Adenine Dinucleotide Solved By Combined Iodide Ion Sad
Mr
Length = 393
Score = 128 bits (322), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 93/279 (33%), Positives = 134/279 (48%), Gaps = 9/279 (3%)
Query: 8 GSEAQKRKYLPSLAQLTTMASWALTEPNHGSDASALSTAATKVEGGWILEGQKRWI---G 64
GSE K++ LP++A MAS+AL+E GSDA+++ T A WIL G K WI G
Sbjct: 115 GSEELKKQVLPAVASGEAMASYALSEREAGSDAASMRTRAVADGDDWILNGSKCWITNGG 174
Query: 65 NSTFADVLVVMARNTTTKKINAFIVKKDAPGLTATKIENKIGLRMLQNGDILFKKVFVPD 124
ST+ V+ V + I+AF+V KD G T E K+G++ ++ F+ +P
Sbjct: 175 KSTWYTVMAVTDPDKGANGISAFMVHKDDEGFTVGPKERKLGIKGSPTTELYFENCRIPG 234
Query: 125 EDRL---PGFNSFQDTNIPLSVARVMVAWQTIGISIGVYDMCYRYLMERKQFGAPLAAFQ 181
DR+ PG F+ L R + Q +GI+ G D Y ERKQFG P++ Q
Sbjct: 235 -DRIIGEPG-TGFKTALATLDHTRPTIGAQAVGIAQGALDAAIAYTKERKQFGRPVSDNQ 292
Query: 182 ITQQKLAQMLGNIQAMNLVGWRLCRMCENGKMSLGQASLG-KAWVSARARETVALGRELL 240
Q LA M I+A L+ + E G+ LG S K + S A E +L
Sbjct: 293 GVQFMLADMAMKIEAARLMVYSAAARAERGEGDLGFISAASKCFASDVAMEVTTDAVQLF 352
Query: 241 GGNGIVTDFLVGKAFCDFEPFHTGEGSYDINNLIAAREI 279
GG G DF V + D + EG+ I ++ +R +
Sbjct: 353 GGYGYTQDFPVERMMRDAKITQIYEGTNQIQRVVMSRAL 391
>pdb|3OWA|A Chain A, Crystal Structure Of Acyl-Coa Dehydrogenase Complexed With
Fad From Bacillus Anthracis
pdb|3OWA|B Chain B, Crystal Structure Of Acyl-Coa Dehydrogenase Complexed With
Fad From Bacillus Anthracis
pdb|3OWA|C Chain C, Crystal Structure Of Acyl-Coa Dehydrogenase Complexed With
Fad From Bacillus Anthracis
pdb|3OWA|D Chain D, Crystal Structure Of Acyl-Coa Dehydrogenase Complexed With
Fad From Bacillus Anthracis
Length = 597
Score = 127 bits (319), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 93/296 (31%), Positives = 145/296 (48%), Gaps = 25/296 (8%)
Query: 2 LTIATSGSEAQKRKYLPSLAQLTTMASWALTEPNHGSDA-SALSTAATKVEG-GWILEGQ 59
L I G+E QK+KYLP LA +A++ALTEP GSDA A +TA EG ++L G+
Sbjct: 124 LPIVLFGNEEQKKKYLPLLATGEKLAAYALTEPGSGSDALGAKTTARLNAEGTHYVLNGE 183
Query: 60 KRWIGNSTFADVLVVMARNTTTKKINAFIVKKDAPGLTATKIENKIGLRMLQNGDILFKK 119
K+WI NS FADV +V A+ + +AFIV+KD G++ + E K G++ ++ +
Sbjct: 184 KQWITNSAFADVFIVYAK-IDGEHFSAFIVEKDYAGVSTSPEEKKXGIKCSSTRTLILED 242
Query: 120 VFVPDEDRLP--GFNSFQDTNIPLSVARVMVAWQTIGISIGVYDMCYRYLMERKQFGAPL 177
VP E+ L G NI L++ R + T+G + ++ +Y +R+QF P+
Sbjct: 243 ALVPKENLLGEIGKGHIIAFNI-LNIGRYKLGVGTVGSAKRAVEISAQYANQRQQFKQPI 301
Query: 178 AAFQITQQKLAQMLGNIQAMNLVGWRLCRMCENGKMSLG-------------------QA 218
A F + Q+KLA A +R + E+ +L +
Sbjct: 302 ARFPLIQEKLANXAAKTYAAESSVYRTVGLFESRXSTLSEEEVKDGKAVAASIAEYAIEC 361
Query: 219 SLGKAWVSARARETVALGRELLGGNGIVTDFLVGKAFCDFEPFHTGEGSYDINNLI 274
SL K + S TV G ++ GG G ++ + + + D EG+ +IN LI
Sbjct: 362 SLNKVFGSEVLDYTVDEGVQIHGGYGFXAEYEIERXYRDSRINRIFEGTNEINRLI 417
>pdb|1WS9|A Chain A, Crystal Structure Of Project Id Tt0172 From Thermus
Thermophilus Hb8
pdb|1WS9|B Chain B, Crystal Structure Of Project Id Tt0172 From Thermus
Thermophilus Hb8
pdb|2CX9|A Chain A, Crystal Structure Of Acyl-Coa Dehydrogenase
pdb|2CX9|B Chain B, Crystal Structure Of Acyl-Coa Dehydrogenase
pdb|2CX9|C Chain C, Crystal Structure Of Acyl-Coa Dehydrogenase
pdb|2CX9|D Chain D, Crystal Structure Of Acyl-Coa Dehydrogenase
pdb|2D29|A Chain A, Structural Study On Project Id Tt0172 From Thermus
Thermophilus Hb8
pdb|2D29|B Chain B, Structural Study On Project Id Tt0172 From Thermus
Thermophilus Hb8
Length = 387
Score = 126 bits (317), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 94/284 (33%), Positives = 140/284 (49%), Gaps = 8/284 (2%)
Query: 4 IATSGSEAQKRKYLPSLAQLTTMASWALTEPNHGSDASALSTAATKVEGGWILEGQKRWI 63
I +GSEAQK +LP LA + +W LTEP GSDA+AL T A KVEGGW L G K++I
Sbjct: 100 ILLAGSEAQKEAFLPKLASGEALGAWGLTEPGSGSDAAALKTKAEKVEGGWRLNGTKQFI 159
Query: 64 GNSTFADVLVVMARNTTT-------KKINAFIVKKDAPGLTATKIENKIGLRMLQNGDIL 116
+ A V VVMAR + I+AF + GL + E K+GL ++
Sbjct: 160 TQGSVAGVYVVMARTDPPPSPERKHQGISAFAFFRPERGLKVGRKEEKLGLTASDTAQLI 219
Query: 117 FKKVFVPDEDRL-PGFNSFQDTNIPLSVARVMVAWQTIGISIGVYDMCYRYLMERKQFGA 175
+ +FVP+E L F D L R+ +A +G+ D Y R+ FG
Sbjct: 220 LEDLFVPEEALLGERGKGFYDVLRVLDGGRIGIAAMAVGLGQAALDYALAYAKGREAFGR 279
Query: 176 PLAAFQITQQKLAQMLGNIQAMNLVGWRLCRMCENGKMSLGQASLGKAWVSARARETVAL 235
P+A F+ KLA+ ++A L+ + + + G+ +A+ K + S A +
Sbjct: 280 PIAEFEGVSFKLAEAATELEAARLLYLKAAELKDAGRPFTLEAAQAKLFASEAAVKACDE 339
Query: 236 GRELLGGNGIVTDFLVGKAFCDFEPFHTGEGSYDINNLIAAREI 279
++LGG G V D+ V + + D GEG+ +I L+ AR +
Sbjct: 340 AIQILGGYGYVKDYPVERYWRDARLTRIGEGTSEILKLVIARRL 383
>pdb|2A1T|A Chain A, Structure Of The Human Mcad:etf E165betaa Complex
pdb|2A1T|B Chain B, Structure Of The Human Mcad:etf E165betaa Complex
pdb|2A1T|C Chain C, Structure Of The Human Mcad:etf E165betaa Complex
pdb|2A1T|D Chain D, Structure Of The Human Mcad:etf E165betaa Complex
Length = 421
Score = 126 bits (316), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 87/284 (30%), Positives = 138/284 (48%), Gaps = 7/284 (2%)
Query: 2 LTIATSGSEAQKRKYLPSLAQLTTMASWALTEPNHGSDASALSTAATKVEGGWILEGQKR 61
+ I +G++ QK+KYL + + M ++ +TEP GSD + + T A K +I+ GQK
Sbjct: 131 MPIIIAGNDQQKKKYLGRMTEEPLMCAYCVTEPGAGSDVAGIKTKAEKKGDEYIINGQKM 190
Query: 62 WIGNSTFADVLVVMARNTTTKKINA------FIVKKDAPGLTATKIENKIGLRMLQNGDI 115
WI N A+ ++AR+ K A FIV+ D PG+ + E +G R I
Sbjct: 191 WITNGGKANWYFLLARSDPDPKAPANKAFTGFIVEADTPGIQIGRKELNMGQRCSDTRGI 250
Query: 116 LFKKVFVPDEDRLPGFNS-FQDTNIPLSVARVMVAWQTIGISIGVYDMCYRYLMERKQFG 174
+F+ V VP E+ L G + F+ R +VA +G++ D +Y +ERK FG
Sbjct: 251 VFEDVKVPKENVLIGDGAGFKVAMGAFDKTRPVVAAGAVGLAQRALDEATKYALERKTFG 310
Query: 175 APLAAFQITQQKLAQMLGNIQAMNLVGWRLCRMCENGKMSLGQASLGKAWVSARARETVA 234
L Q LA+M ++ + R ++G+ + AS+ KA+ A +
Sbjct: 311 KLLVEHQAISFMLAEMAMKVELARMSYQRAAWEVDSGRRNTYYASIAKAFAGDIANQLAT 370
Query: 235 LGRELLGGNGIVTDFLVGKAFCDFEPFHTGEGSYDINNLIAARE 278
++LGGNG T++ V K D + + EG+ I LI ARE
Sbjct: 371 DAVQILGGNGFNTEYPVEKLMRDAKIYQIYEGTSQIQRLIVARE 414
>pdb|1EGE|A Chain A, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase
pdb|1EGE|B Chain B, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase
pdb|1EGE|C Chain C, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase
pdb|1EGE|D Chain D, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase
pdb|1T9G|A Chain A, Structure Of The Human Mcad:etf Complex
pdb|1T9G|B Chain B, Structure Of The Human Mcad:etf Complex
pdb|1T9G|C Chain C, Structure Of The Human Mcad:etf Complex
pdb|1T9G|D Chain D, Structure Of The Human Mcad:etf Complex
Length = 396
Score = 125 bits (315), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 87/284 (30%), Positives = 138/284 (48%), Gaps = 7/284 (2%)
Query: 2 LTIATSGSEAQKRKYLPSLAQLTTMASWALTEPNHGSDASALSTAATKVEGGWILEGQKR 61
+ I +G++ QK+KYL + + M ++ +TEP GSD + + T A K +I+ GQK
Sbjct: 106 MPIIIAGNDQQKKKYLGRMTEEPLMCAYCVTEPGAGSDVAGIKTKAEKKGDEYIINGQKM 165
Query: 62 WIGNSTFADVLVVMARNTTTKKINA------FIVKKDAPGLTATKIENKIGLRMLQNGDI 115
WI N A+ ++AR+ K A FIV+ D PG+ + E +G R I
Sbjct: 166 WITNGGKANWYFLLARSDPDPKAPANKAFTGFIVEADTPGIQIGRKELNMGQRCSDTRGI 225
Query: 116 LFKKVFVPDEDRLPGFNS-FQDTNIPLSVARVMVAWQTIGISIGVYDMCYRYLMERKQFG 174
+F+ V VP E+ L G + F+ R +VA +G++ D +Y +ERK FG
Sbjct: 226 VFEDVKVPKENVLIGDGAGFKVAMGAFDKTRPVVAAGAVGLAQRALDEATKYALERKTFG 285
Query: 175 APLAAFQITQQKLAQMLGNIQAMNLVGWRLCRMCENGKMSLGQASLGKAWVSARARETVA 234
L Q LA+M ++ + R ++G+ + AS+ KA+ A +
Sbjct: 286 KLLVEHQAISFMLAEMAMKVELARMSYQRAAWEVDSGRRNTYYASIAKAFAGDIANQLAT 345
Query: 235 LGRELLGGNGIVTDFLVGKAFCDFEPFHTGEGSYDINNLIAARE 278
++LGGNG T++ V K D + + EG+ I LI ARE
Sbjct: 346 DAVQILGGNGFNTEYPVEKLMRDAKIYQIYEGTSQIQRLIVARE 389
>pdb|1BUC|A Chain A, Three-Dimensional Structure Of Butyryl-Coa Dehydrogenase
From Megasphaera Elsdenii
pdb|1BUC|B Chain B, Three-Dimensional Structure Of Butyryl-Coa Dehydrogenase
From Megasphaera Elsdenii
Length = 383
Score = 125 bits (314), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 92/273 (33%), Positives = 136/273 (49%), Gaps = 7/273 (2%)
Query: 8 GSEAQKRKYLPSLAQLTTMASWALTEPNHGSDASALSTAATKVEGG-WILEGQKRWIGNS 66
G+EAQK K+L L + T + ++ LTEPN G+DAS T ATK + G + L G K +I N
Sbjct: 105 GTEAQKEKFLVPLVEGTKLGAFGLTEPNAGTDASGQQTIATKNDDGTYTLNGSKIFITNG 164
Query: 67 TFADVLVVMARNTTTKK---INAFIVKKDAPGLTATKIENKIGLRMLQNGDILFKKVFVP 123
AD+ +V A +K I AFI++ PG T K E+K+G+ Q +++F+ V VP
Sbjct: 165 GAADIYIVFAMTDKSKGNHGITAFILEDGTPGFTYGKKEDKMGIHTSQTMELVFQDVKVP 224
Query: 124 DEDRL-PGFNSFQDTNIPLSVARVMVAWQTIGISIGVYDMCYRYLMERKQFGAPLAAFQI 182
E+ L F+ + L R+ VA Q +GI+ Y +R QFG PL FQ
Sbjct: 225 AENMLGEEGKGFKIAMMTLDGGRIGVAAQALGIAEAALADAVEYSKQRVQFGKPLCKFQS 284
Query: 183 TQQKLAQMLGNIQAM-NLVGWRLCRMCENGKMSLGQASLGKAWVSARARETVALGRELLG 241
KLA M I+A NLV C+ E GK A++ K S A ++ G
Sbjct: 285 ISFKLADMKMQIEAARNLVYKAACKKQE-GKPFTVDAAIAKRVASDVAMRVTTEAVQIFG 343
Query: 242 GNGIVTDFLVGKAFCDFEPFHTGEGSYDINNLI 274
G G ++ V + D + EG+ ++ ++
Sbjct: 344 GYGYSEEYPVARHMRDAKITQIYEGTNEVQLMV 376
>pdb|3MPI|A Chain A, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
Glutaryl-Coa Complex
pdb|3MPI|B Chain B, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
Glutaryl-Coa Complex
pdb|3MPI|C Chain C, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
Glutaryl-Coa Complex
pdb|3MPI|D Chain D, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
Glutaryl-Coa Complex
pdb|3MPJ|A Chain A, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
pdb|3MPJ|B Chain B, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
pdb|3MPJ|D Chain D, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
pdb|3MPJ|E Chain E, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
pdb|3MPJ|F Chain F, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
pdb|3MPJ|G Chain G, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
Length = 397
Score = 125 bits (313), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 86/292 (29%), Positives = 146/292 (50%), Gaps = 21/292 (7%)
Query: 3 TIATSGSEAQKRKYLPSLAQLTTMASWALTEPNHGSDASALSTAATKVEGGWILEGQKRW 62
TI T GSEA K+KY+P L+ + + +TEP+ GSD A+S+ A W+L G K W
Sbjct: 100 TILTYGSEALKKKYVPKLSSAEFLGGFGITEPDAGSDVMAMSSTAEDKGDHWLLNGSKTW 159
Query: 63 IGNSTFADVLVVMA---RNTTTKKINAFIVK-KDAPGLTATKIENKIGLRMLQNGDILFK 118
I N+ ADVL+ A + ++ ++AF+++ ++ PG+ + +E K+G G++
Sbjct: 160 ISNAAQADVLIYYAYTDKAAGSRGLSAFVIEPRNFPGIKTSNLE-KLGSHASPTGELFLD 218
Query: 119 KVFVPDEDRL--PG------FNSFQDTNIPLSVARVMVAWQTIGISIGVYDMCYRYLMER 170
V VP E+ L PG F S T R+ A +G++ D +Y ER
Sbjct: 219 NVKVPKENILGKPGDGARIVFGSLNHT-------RLSAAAGGVGLAQACLDAAIKYCNER 271
Query: 171 KQFGAPLAAFQITQQKLAQMLGNIQAMNLVGWRLCRMCENGKMSLG-QASLGKAWVSARA 229
+QFG P+ FQ+ Q +AQM ++A L+ ++ + G+++ G ++ K
Sbjct: 272 RQFGKPIGDFQMNQDMIAQMAVEVEAARLLAYKAAAAKDEGRLNNGLDVAMAKYAAGEAV 331
Query: 230 RETVALGRELLGGNGIVTDFLVGKAFCDFEPFHTGEGSYDINNLIAAREITG 281
+ +LG G T++ V + + D ++ EGS +I +I A + G
Sbjct: 332 SKCANYAMRILGAYGYSTEYPVARFYRDAPTYYMVEGSANICKMIIALDQLG 383
>pdb|1EGD|A Chain A, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase
pdb|1EGD|B Chain B, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase
pdb|1EGD|C Chain C, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase
pdb|1EGD|D Chain D, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase
pdb|1EGC|A Chain A, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase Complexed With Octanoyl-Coa
pdb|1EGC|B Chain B, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase Complexed With Octanoyl-Coa
pdb|1EGC|C Chain C, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase Complexed With Octanoyl-Coa
pdb|1EGC|D Chain D, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase Complexed With Octanoyl-Coa
Length = 396
Score = 122 bits (307), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 86/284 (30%), Positives = 137/284 (48%), Gaps = 7/284 (2%)
Query: 2 LTIATSGSEAQKRKYLPSLAQLTTMASWALTEPNHGSDASALSTAATKVEGGWILEGQKR 61
+ I +G++ QK+KYL + + M ++ +TEP GSD + + T A K +I+ GQK
Sbjct: 106 MPIIIAGNDQQKKKYLGRMTEEPLMCAYCVTEPGAGSDVAGIKTKAEKKGDEYIINGQKM 165
Query: 62 WIGNSTFADVLVVMARNTTTKKINA------FIVKKDAPGLTATKIENKIGLRMLQNGDI 115
WI N A+ ++AR+ K A FIV+ D PG+ + E +G R I
Sbjct: 166 WITNGGKANWYFLLARSDPDPKAPANKAFTGFIVEADTPGIQIGRKELNMGQRCSDTRGI 225
Query: 116 LFKKVFVPDEDRLPGFNS-FQDTNIPLSVARVMVAWQTIGISIGVYDMCYRYLMERKQFG 174
+F+ V VP E+ L G + F+ R +VA +G++ D +Y +ERK FG
Sbjct: 226 VFEDVKVPKENVLIGDGAGFKVAMGAFDKERPVVAAGAVGLAQRALDEATKYALERKTFG 285
Query: 175 APLAAFQITQQKLAQMLGNIQAMNLVGWRLCRMCENGKMSLGQASLGKAWVSARARETVA 234
L Q LA+M ++ + R ++G+ + AS+ KA+ A +
Sbjct: 286 KLLVEHQAISFMLAEMAMKVELARMSYQRAAWEVDSGRRNTYYASIAKAFAGDIANQLAT 345
Query: 235 LGRELLGGNGIVTDFLVGKAFCDFEPFHTGEGSYDINNLIAARE 278
++LGGNG T++ V K D + + G+ I LI ARE
Sbjct: 346 DAVQILGGNGFNTEYPVEKLMRDAKIYQIYGGTSQIQRLIVARE 389
>pdb|2Z1Q|A Chain A, Crystal Structure Of Acyl Coa Dehydrogenase
pdb|2Z1Q|B Chain B, Crystal Structure Of Acyl Coa Dehydrogenase
Length = 577
Score = 122 bits (307), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 91/291 (31%), Positives = 138/291 (47%), Gaps = 20/291 (6%)
Query: 2 LTIATSGSEAQKRKYLPSLAQLTTMASWALTEPNHGSDASALSTAATKVEGG--WILEGQ 59
L + G+E QKRKYLP LA +A++ LTEP GSDA A T AT E G +IL G
Sbjct: 119 LPLVYFGTEEQKRKYLPKLASGEWIAAYCLTEPGSGSDALAAKTRATLSEDGKHYILNGV 178
Query: 60 KRWIGNSTFADVLVVMARNTTTKKINAFIVKKDAPGLTATKIENKIGLRMLQNGDILFKK 119
K+WI N+ FA + V A+ + AF+V++D PGL+ E K+G++ ++ +
Sbjct: 179 KQWISNAGFAHLFTVFAK-VDGEHFTAFLVERDTPGLSFGPEEKKMGIKASSTRQVILED 237
Query: 120 VFVPDEDRLPGFNSFQDT--NIPLSVARVMVAWQTIGISIGVYDMCYRYLMERKQFGAPL 177
V VP E+ L N+ L+V R + +G + ++ +Y +R QFG P+
Sbjct: 238 VKVPVENVLGEIGKGHKIAFNV-LNVGRYKLGAGAVGGAKRALELSAQYATQRVQFGRPI 296
Query: 178 AAFQITQQKLAQMLGNIQAMNLVGWRLCRMCEN---GKMSLGQASLGKAWVSARARETVA 234
F + QQKL +M I A +R + + GK G + A
Sbjct: 297 GRFGLIQQKLGEMASRIYAAESAVYRTVGLIDEALLGKKGPEAVMAGIEEYAVEASIIKV 356
Query: 235 LGRELL-----------GGNGIVTDFLVGKAFCDFEPFHTGEGSYDINNLI 274
LG E+L GG G ++ + +A+ D EG+ +IN L+
Sbjct: 357 LGSEVLDYVVDEGVQIHGGYGYSQEYPIERAYRDARINRIFEGTNEINRLL 407
>pdb|3MDD|A Chain A, Crystal Structures Of Medium Chain Acyl-Coa Dehydrogenase
From Pig Liver Mitochondria With And Without Substrate
pdb|3MDD|B Chain B, Crystal Structures Of Medium Chain Acyl-Coa Dehydrogenase
From Pig Liver Mitochondria With And Without Substrate
pdb|3MDE|A Chain A, Crystal Structures Of Medium Chain Acyl-Coa Dehydrogenase
From Pig Liver Mitochondria With And Without Substrate
pdb|3MDE|B Chain B, Crystal Structures Of Medium Chain Acyl-Coa Dehydrogenase
From Pig Liver Mitochondria With And Without Substrate
Length = 385
Score = 120 bits (300), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 85/281 (30%), Positives = 134/281 (47%), Gaps = 7/281 (2%)
Query: 8 GSEAQKRKYLPSLAQLTTMASWALTEPNHGSDASALSTAATKVEGGWILEGQKRWIGNST 67
G+ Q++KYL + + M ++ +TEP GSD + + T A K +I+ GQK WI N
Sbjct: 102 GNYQQQKKYLGRMTEEPLMCAYCVTEPGAGSDVAGIKTKAEKKGDEYIINGQKMWITNGG 161
Query: 68 FADVLVVMARNT------TTKKINAFIVKKDAPGLTATKIENKIGLRMLQNGDILFKKVF 121
A+ ++AR+ +K FIV+ D PG+ + E +G R I+F+ V
Sbjct: 162 KANWYFLLARSDPDPKAPASKAFTGFIVEADTPGVQIGRKEINMGQRCSDTRGIVFEDVR 221
Query: 122 VPDEDRLPGFNS-FQDTNIPLSVARVMVAWQTIGISIGVYDMCYRYLMERKQFGAPLAAF 180
VP E+ L G + F+ R VA +G++ D +Y +ERK FG LA
Sbjct: 222 VPKENVLTGEGAGFKIAMGTFDKTRPPVAAGAVGLAQRALDEATKYALERKTFGKLLAEH 281
Query: 181 QITQQKLAQMLGNIQAMNLVGWRLCRMCENGKMSLGQASLGKAWVSARARETVALGRELL 240
Q LA M ++ L R ++G+ + AS+ KA+ + A + ++
Sbjct: 282 QGISFLLADMAMKVELARLSYQRAAWEIDSGRRNTYYASIAKAYAADIANQLATDAVQVF 341
Query: 241 GGNGIVTDFLVGKAFCDFEPFHTGEGSYDINNLIAAREITG 281
GGNG T++ V K D + + EG+ I +I ARE G
Sbjct: 342 GGNGFNTEYPVEKLMRDAKIYQIYEGTAQIQRIIIAREHIG 382
>pdb|1UDY|A Chain A, Medium-Chain Acyl-Coa Dehydrogenase With
3-Thiaoctanoyl-Coa
pdb|1UDY|B Chain B, Medium-Chain Acyl-Coa Dehydrogenase With
3-Thiaoctanoyl-Coa
pdb|1UDY|C Chain C, Medium-Chain Acyl-Coa Dehydrogenase With
3-Thiaoctanoyl-Coa
pdb|1UDY|D Chain D, Medium-Chain Acyl-Coa Dehydrogenase With
3-Thiaoctanoyl-Coa
Length = 396
Score = 120 bits (300), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 85/281 (30%), Positives = 134/281 (47%), Gaps = 7/281 (2%)
Query: 8 GSEAQKRKYLPSLAQLTTMASWALTEPNHGSDASALSTAATKVEGGWILEGQKRWIGNST 67
G+ Q++KYL + + M ++ +TEP GSD + + T A K +I+ GQK WI N
Sbjct: 112 GNYQQQKKYLGRMTEEPLMCAYCVTEPGAGSDVAGIKTKAEKKGDEYIINGQKMWITNGG 171
Query: 68 FADVLVVMARN------TTTKKINAFIVKKDAPGLTATKIENKIGLRMLQNGDILFKKVF 121
A+ ++AR+ +K FIV+ D PG+ + E +G R I+F+ V
Sbjct: 172 KANWYFLLARSDPDPKAPASKAFTGFIVEADTPGVQIGRKEINMGQRCSDTRGIVFEDVR 231
Query: 122 VPDEDRLPGFNS-FQDTNIPLSVARVMVAWQTIGISIGVYDMCYRYLMERKQFGAPLAAF 180
VP E+ L G + F+ R VA +G++ D +Y +ERK FG LA
Sbjct: 232 VPKENVLTGEGAGFKIAMGTFDKTRPPVAAGAVGLAQRALDEATKYALERKTFGKLLAEH 291
Query: 181 QITQQKLAQMLGNIQAMNLVGWRLCRMCENGKMSLGQASLGKAWVSARARETVALGRELL 240
Q LA M ++ L R ++G+ + AS+ KA+ + A + ++
Sbjct: 292 QGISFLLADMAMKVELARLSYQRAAWEIDSGRRNTYYASIAKAYAADIANQLATDAVQVF 351
Query: 241 GGNGIVTDFLVGKAFCDFEPFHTGEGSYDINNLIAAREITG 281
GGNG T++ V K D + + EG+ I +I ARE G
Sbjct: 352 GGNGFNTEYPVEKLMRDAKIYQIYEGTAQIQRIIIAREHIG 392
>pdb|3B96|A Chain A, Structural Basis For Substrate Fatty-Acyl Chain
Specificity: Crystal Structure Of Human Very-Long-Chain
Acyl-Coa Dehydrogenase
Length = 587
Score = 113 bits (283), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 87/297 (29%), Positives = 140/297 (47%), Gaps = 20/297 (6%)
Query: 8 GSEAQKRKYLPSLAQLTTMASWALTEPNHGSDASALSTAATKVEGG--WILEGQKRWIGN 65
G++AQK KYLP LA T+A++ LTEP+ GSDA+++ T+A G + L G K WI N
Sbjct: 125 GTKAQKEKYLPKLASGETVAAFCLTEPSSGSDAASIRTSAVPSPCGKYYTLNGSKLWISN 184
Query: 66 STFADVLVVMARNTTT--------KKINAFIVKKDAPGLTATKIENKIGLRMLQNGDILF 117
AD+ V A+ T +KI AF+V++ G+T E K+G++ ++ F
Sbjct: 185 GGLADIFTVFAKTPVTDPATGAVKEKITAFVVERGFGGITHGPPEKKMGIKASNTAEVFF 244
Query: 118 KKVFVPDEDRLPGFNS-FQDTNIPLSVARVMVAWQTIGISIGVYDMCYRYLMERKQFGAP 176
V VP E+ L S F+ L+ R +A G G+ + R QFG
Sbjct: 245 DGVRVPSENVLGEVGSGFKVAMHILNNGRFGMAAALAGTMRGIIAKAVDHATNRTQFGEK 304
Query: 177 LAAFQITQQKLAQMLGNIQAMNLVGWRLCRMCENGKMSLG-QASLGKAWVSARARETVAL 235
+ F + Q+KLA+M+ + + + + G +A++ K + S A +
Sbjct: 305 IHNFGLIQEKLARMVMLQYVTESMAYMVSANMDQGATDFQIEAAISKIFGSEAAWKVTDE 364
Query: 236 GRELLGGNGIVTDFLVGKAFCDFEPFHTGEGSYDINNLIAA--------REITGFAS 284
+++GG G + + V + D F EG+ DI L A +E++G S
Sbjct: 365 CIQIMGGMGFMKEPGVERVLRDLRIFRIFEGTNDILRLFVALQGCMDKGKELSGLGS 421
>pdb|2UXW|A Chain A, Crystal Structure Of Human Very Long Chain Acyl-coa
Dehydrogenase (acadvl)
Length = 607
Score = 113 bits (283), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 87/297 (29%), Positives = 140/297 (47%), Gaps = 20/297 (6%)
Query: 8 GSEAQKRKYLPSLAQLTTMASWALTEPNHGSDASALSTAATKVEGG--WILEGQKRWIGN 65
G++AQK KYLP LA T+A++ LTEP+ GSDA+++ T+A G + L G K WI N
Sbjct: 145 GTKAQKEKYLPKLASGETVAAFCLTEPSSGSDAASIRTSAVPSPCGKYYTLNGSKLWISN 204
Query: 66 STFADVLVVMARNTTT--------KKINAFIVKKDAPGLTATKIENKIGLRMLQNGDILF 117
AD+ V A+ T +KI AF+V++ G+T E K+G++ ++ F
Sbjct: 205 GGLADIFTVFAKTPVTDPATGAVKEKITAFVVERGFGGITHGPPEKKMGIKASNTAEVFF 264
Query: 118 KKVFVPDEDRLPGFNS-FQDTNIPLSVARVMVAWQTIGISIGVYDMCYRYLMERKQFGAP 176
V VP E+ L S F+ L+ R +A G G+ + R QFG
Sbjct: 265 DGVRVPSENVLGEVGSGFKVAMHILNNGRFGMAAALAGTMRGIIAKAVDHATNRTQFGEK 324
Query: 177 LAAFQITQQKLAQMLGNIQAMNLVGWRLCRMCENGKMSLG-QASLGKAWVSARARETVAL 235
+ F + Q+KLA+M+ + + + + G +A++ K + S A +
Sbjct: 325 IHNFGLIQEKLARMVMLQYVTESMAYMVSANMDQGATDFQIEAAISKIFGSEAAWKVTDE 384
Query: 236 GRELLGGNGIVTDFLVGKAFCDFEPFHTGEGSYDINNLIAA--------REITGFAS 284
+++GG G + + V + D F EG+ DI L A +E++G S
Sbjct: 385 CIQIMGGMGFMKEPGVERVLRDLRIFRIFEGTNDILRLFVALQGCMDKGKELSGLGS 441
>pdb|2PG0|A Chain A, Crystal Structure Of Acyl-Coa Dehydrogenase From
Geobacillus Kaustophilus
pdb|2PG0|B Chain B, Crystal Structure Of Acyl-Coa Dehydrogenase From
Geobacillus Kaustophilus
Length = 385
Score = 112 bits (280), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 78/285 (27%), Positives = 136/285 (47%), Gaps = 12/285 (4%)
Query: 4 IATSGSEAQKRKYLPSLAQLTTMASWALTEPNHGSDASALSTAATKVEGGWILEGQKRWI 63
IA+ G+E QK+K+LP + + A+TEP GSD + +ST A K +I+ GQK +I
Sbjct: 102 IASYGTEEQKQKWLPKCVTGELITAIAMTEPGAGSDLANISTTAVKDGDYYIVNGQKTFI 161
Query: 64 GNSTFADVLVVMARNTTTKK-----INAFIVKKDAPGLTATKIENKIGLRMLQNGDILFK 118
N AD++VV + K I+ +V++D PG T + K+GL ++ F+
Sbjct: 162 TNGIHADLIVVACKTDPQAKPPHRGISLLVVERDTPGFTRGRKLEKVGLHAQDTAELFFQ 221
Query: 119 KVFVPDEDRL----PGFNSFQDTNIPLSVARVMVAWQTIGISIGVYDMCYRYLMERKQFG 174
VP + L GF + L R++VA + ++ + +Y+ +R FG
Sbjct: 222 DAKVPAYNLLGEEGKGFYYLMEK---LQQERLVVAIAAQTAAEVMFSLTKQYVKQRTAFG 278
Query: 175 APLAAFQITQQKLAQMLGNIQAMNLVGWRLCRMCENGKMSLGQASLGKAWVSARARETVA 234
++ FQ Q +LA+M I R+ GK + + S+ K W++ A+ A
Sbjct: 279 KRVSEFQTVQFRLAEMATEIALGRTFVDRVIEEHMAGKQIVTEVSMAKWWITEMAKRVAA 338
Query: 235 LGRELLGGNGIVTDFLVGKAFCDFEPFHTGEGSYDINNLIAAREI 279
+L GG G + ++ + + + D G+ ++ I AR++
Sbjct: 339 EAMQLHGGYGYMEEYEIARRYRDIPVSAIYAGTNEMMKTIIARQL 383
>pdb|1RX0|A Chain A, Crystal Structure Of Isobutyryl-Coa Dehydrogenase
Complexed With SubstrateLIGAND.
pdb|1RX0|B Chain B, Crystal Structure Of Isobutyryl-Coa Dehydrogenase
Complexed With SubstrateLIGAND.
pdb|1RX0|C Chain C, Crystal Structure Of Isobutyryl-Coa Dehydrogenase
Complexed With SubstrateLIGAND.
pdb|1RX0|D Chain D, Crystal Structure Of Isobutyryl-Coa Dehydrogenase
Complexed With SubstrateLIGAND
Length = 393
Score = 109 bits (273), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 85/287 (29%), Positives = 135/287 (47%), Gaps = 18/287 (6%)
Query: 4 IATSGSEAQKRKYLPSLAQLTTMASWALTEPNHGSDASALSTAATKVEGGWILEGQKRWI 63
I + G+E Q+ K+ P L + AS+ LTEP GSDA++L T+A K +IL G K +I
Sbjct: 111 IDSFGNEEQRHKFCPPLCTMEKFASYCLTEPGSGSDAASLLTSAKKQGDHYILNGSKAFI 170
Query: 64 GNSTFADVLVVMARN--TTTKKINAFIVKKDAPGLTATKIENKIGLRMLQNGDILFKKVF 121
+ +D+ VVM R K I+ +V+K PGL+ K E K+G ++F+
Sbjct: 171 SGAGESDIYVVMCRTGGPGPKGISCIVVEKGTPGLSFGKKEKKVGWNSQPTRAVIFEDCA 230
Query: 122 VPDEDRLPGF-NSFQDTNIPLSVARVMVAWQTIGISIGVYDMCYRYLMERKQFGAPLAAF 180
VP +R+ F L+ R+ +A ++G + + +L RKQFG PLA+
Sbjct: 231 VPVANRIGSEGQGFLIAVRGLNGGRINIASCSLGAAHASVILTRDHLNVRKQFGEPLASN 290
Query: 181 QITQQKLAQMLGNIQAMNLVGWRLCRMCENGKMSLGQ--------ASLGKAWVSARARET 232
Q Q LA M A LV RL M N ++L + S+ K + +
Sbjct: 291 QYLQFTLADM-----ATRLVAARL--MVRNAAVALQEERKDAVALCSMAKLFATDECFAI 343
Query: 233 VALGRELLGGNGIVTDFLVGKAFCDFEPFHTGEGSYDINNLIAAREI 279
++ GG G + D+ V + D EGS ++ ++ +R +
Sbjct: 344 CNQALQMHGGYGYLKDYAVQQYVRDSRVHQILEGSNEVMRILISRSL 390
>pdb|3NF4|A Chain A, Crystal Structure Of Acyl-Coa Dehydrogenase From
Mycobacterium Thermoresistibile Bound To Flavin Adenine
Dinucleotide
pdb|3NF4|B Chain B, Crystal Structure Of Acyl-Coa Dehydrogenase From
Mycobacterium Thermoresistibile Bound To Flavin Adenine
Dinucleotide
Length = 387
Score = 102 bits (253), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 77/276 (27%), Positives = 124/276 (44%), Gaps = 4/276 (1%)
Query: 8 GSEAQKRKYLPSLAQLTTMASWALTEPNHGSDASALSTAATKVEGGWILEGQKRWIGNST 67
G+E QK+++LP + + +++L+EP GSDA+AL AAT +GG+++ G K WI +
Sbjct: 112 GTEEQKKRWLPGMLSGEQIGAYSLSEPQAGSDAAALRCAATPTDGGYVINGSKSWITHGG 171
Query: 68 FADVLVVMARN-TTTKKINAFIVKKDAPGLTATKIENKIGLRMLQNGDILFKKVFVPDED 126
AD + AR ++ ++ F+V D PGL+ K E K+GL + + + D D
Sbjct: 172 KADFYTLFARTGEGSRGVSCFLVPADQPGLSFGKPEEKMGLHAVPTTSAFYDNARI-DAD 230
Query: 127 RLPGFN--SFQDTNIPLSVARVMVAWQTIGISIGVYDMCYRYLMERKQFGAPLAAFQITQ 184
R G Q L R+ +A G++ D Y ER FG + Q
Sbjct: 231 RRIGEEGQGLQIAFSALDSGRLGIAAVATGLAQAALDEAVAYANERTAFGRKIIDHQGLG 290
Query: 185 QKLAQMLGNIQAMNLVGWRLCRMCENGKMSLGQASLGKAWVSARARETVALGRELLGGNG 244
LA M + R + G+ QAS+ K + A + ++ GG G
Sbjct: 291 FLLADMAAAVATARATYLDAARRRDQGRPYSQQASIAKLTATDAAMKVTTDAVQVFGGVG 350
Query: 245 IVTDFLVGKAFCDFEPFHTGEGSYDINNLIAAREIT 280
D+ V + + + EG+ I L+ AR +T
Sbjct: 351 YTRDYRVERYMREAKIMQIFEGTNQIQRLVIARGLT 386
>pdb|3R7K|A Chain A, Crystal Structure Of A Probable Acyl Coa Dehydrogenase
From Mycobacterium Abscessus Atcc 19977 DSM 44196
pdb|3R7K|B Chain B, Crystal Structure Of A Probable Acyl Coa Dehydrogenase
From Mycobacterium Abscessus Atcc 19977 DSM 44196
pdb|3R7K|C Chain C, Crystal Structure Of A Probable Acyl Coa Dehydrogenase
From Mycobacterium Abscessus Atcc 19977 DSM 44196
pdb|3R7K|D Chain D, Crystal Structure Of A Probable Acyl Coa Dehydrogenase
From Mycobacterium Abscessus Atcc 19977 DSM 44196
Length = 403
Score = 81.3 bits (199), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 68/280 (24%), Positives = 124/280 (44%), Gaps = 5/280 (1%)
Query: 4 IATSGSEAQKRKYL-PSLAQLTTMASWALTEPNHGSDASALSTAATKVEGGWILEGQKRW 62
IA +GS+A +Y+ P+LA + S +TEP GSD + L T A + +++ G K +
Sbjct: 123 IAANGSDALIERYVRPTLAG-KMIGSLGVTEPGAGSDVANLRTRAVREGDTYVVNGAKTF 181
Query: 63 IGNSTFADVLVVMARN--TTTKKINAFIVKKDAPGLTATKIENKIGLRMLQNGDILFKKV 120
I + AD + R ++ ++ K++PG ++ +K+G R ++ F V
Sbjct: 182 ITSGVRADFVTTAVRTGGPGYGGVSLLVIDKNSPGFEVSRRLDKMGWRCSDTAELSFVDV 241
Query: 121 FVPDEDRLPGFNS-FQDTNIPLSVARVMVAWQTIGISIGVYDMCYRYLMERKQFGAPLAA 179
VP ++ + NS F R+ +A Q + D+ + ER+ FG PL
Sbjct: 242 RVPADNLVGAENSGFLQIMQQFQAERLGIAVQAYATAGRALDLAKSWARERETFGRPLTG 301
Query: 180 FQITQQKLAQMLGNIQAMNLVGWRLCRMCENGKMSLGQASLGKAWVSARARETVALGREL 239
QI + KLA+M + + + G+ + + S+ K V ++
Sbjct: 302 RQIIRHKLAEMARQVDVACTYTRAVMQRWLAGEDVVAEVSMAKNTAVYACDYVVNEAVQI 361
Query: 240 LGGNGIVTDFLVGKAFCDFEPFHTGEGSYDINNLIAAREI 279
GG G + + + + + D G G+ +I N + A+ I
Sbjct: 362 FGGMGYMRESEIERHYRDCRILGIGGGTNEIMNEVIAKRI 401
>pdb|3OIB|A Chain A, Crystal Structure Of A Putative Acyl-Coa Dehydrogenase
From Mycobacterium Smegmatis, Iodide Soak
pdb|3OIB|B Chain B, Crystal Structure Of A Putative Acyl-Coa Dehydrogenase
From Mycobacterium Smegmatis, Iodide Soak
pdb|3P4T|A Chain A, Crystal Structure Of A Putative Acyl-Coa Dehydrogenase
From Mycobacterium Smegmatis
pdb|3P4T|B Chain B, Crystal Structure Of A Putative Acyl-Coa Dehydrogenase
From Mycobacterium Smegmatis
Length = 403
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 67/263 (25%), Positives = 108/263 (41%), Gaps = 5/263 (1%)
Query: 26 MASWALTEPNHGSDASALSTAATKVEGGWILEGQKRWIGNSTFADVLVVMARN--TTTKK 83
+ + A+TEP GSD L T A +++ G K +I + AD +V AR
Sbjct: 142 IGALAITEPGGGSDVGHLRTRADLDGDHYVINGAKTYITSGVRADYVVTAARTGGPGAGG 201
Query: 84 INAFIVKKDAPGLTATKIENKIGLRMLQNGDILFKKVFVPDEDRLPGFNS-FQDTNIPLS 142
++ +V K PG T+ +K+G R ++ + V VP + + N+ F
Sbjct: 202 VSLIVVDKGTPGFEVTRKLDKMGWRSSDTAELSYTDVRVPVANLVGSENTGFAQIAAAFV 261
Query: 143 VARVMVAWQTIGISIGVYDMCYRYLMERKQFGAPLAAFQITQQKLAQMLGNIQAMNLVGW 202
RV +A Q + D+ + R FG PL + Q Q LA M I +
Sbjct: 262 AERVGLATQAYAGAQRCLDLTVEWCRNRDTFGRPLISRQAVQNTLAGMARRIDVARVYTR 321
Query: 203 RLCRMCENGKMSLGQASLGKAWVSARARETVA-LGRELLGGNGIVTDFLVGKAFCDFEPF 261
+ G+ +L + A E VA +L GG G + + V + + D
Sbjct: 322 HVVERQLAGETNLIAEVCFAKNTAVEAGEWVANQAVQLFGGMGYMAESEVERQYRDMRIL 381
Query: 262 HTGEGSYDINNLIAAREITGFAS 284
G G+ +I +AA+ + GF S
Sbjct: 382 GIGGGTTEILTSLAAKTL-GFQS 403
>pdb|1R2J|A Chain A, Fkbi For Biosynthesis Of Methoxymalonyl Extender Unit Of
Fk520 Polyketide Immunosuppresant
Length = 366
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 79/194 (40%), Gaps = 12/194 (6%)
Query: 3 TIATSGSEAQKRKYLPSLAQLTTMASWALTEPNHGSDASALSTAATKVEGGWILEGQKRW 62
T+ G Q+ +L L +A+ +E GSD SA+ T +++G K W
Sbjct: 84 TVQRLGDAGQRATFLKELTS-GKLAAVGFSERQAGSDLSAMRTRVRLDGDTAVVDGHKVW 142
Query: 63 IGNSTFADVLVVMARNTTTKKINAFIVKKDAPGLTATKIENKIGLRMLQNGDILFKKVFV 122
+ +AD LVV +V D PG+ ++ G R + D+ +V V
Sbjct: 143 TTAAAYADHLVVFGLQEDGSG-AVVVVPADTPGVRVERVPKPSGCRAAGHADLHLDQVRV 201
Query: 123 PDEDRLPGFNSFQDTNIPLSVA------RVMVAWQTIGISIGVYDMCYRYLMERKQFGAP 176
P L G + ++P+ VA R VAW +GI + R+QFG P
Sbjct: 202 PAGAVLAGSGA----SLPMLVAASLAYGRKSVAWGCVGILRACRTAAVAHARTREQFGRP 257
Query: 177 LAAFQITQQKLAQM 190
L Q+ +A +
Sbjct: 258 LGDHQLVAGHIADL 271
>pdb|4HR3|A Chain A, Structure Of A Putative Acyl-Coa Dehydrogenase From
Mycobacterium Abscessus
Length = 415
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 66/299 (22%), Positives = 124/299 (41%), Gaps = 17/299 (5%)
Query: 1 MLTIATSGSEAQKRKYLPSLAQLTTMASWALTEPNHGSDASALSTAATKVEGGW-ILEGQ 59
M + GS+ QK +L L + +++ +TEP+ S + A VEG ++ G+
Sbjct: 118 MEVLHRYGSQEQKEVWLEPLLEGDIRSAFCMTEPDVASSDATNMAATAVVEGDEVVINGR 177
Query: 60 KRWIGNSTFADVLVVMARNTTTKKINAF------IVKKDAPGLTATKIENKIGLRMLQNG 113
K W D V++ T + + +V D PG+T ++ +G G
Sbjct: 178 KWWSTGVGHPDCKVIIFMGLTDPNAHRYARHSMVLVPMDTPGITVERMLPTMGFYDEPGG 237
Query: 114 D--ILFKKVFVPDEDRLPGF-NSFQDTNIPLSVARVMVAWQTIGISIGVYDMCYRYLMER 170
+ F V +P + + G F+ L RV A + IG++ + R ++R
Sbjct: 238 HGVVSFDNVRLPADAFIAGPGKGFEIAQGRLGPGRVHHAMRLIGLAEVALEHACRRGLDR 297
Query: 171 KQFGAPLAAFQITQQKLAQMLGNIQAMNLV----GWRLCRMCENGKMSLGQASLGKAWVS 226
FG PL ++++A I L+ W L + G +S S K
Sbjct: 298 TAFGKPLVNLGGNRERIADARIAINQTRLLVLHAAWLLDTVGIMGALS--AVSEIKVAAP 355
Query: 227 ARARETVALGRELLGGNGIVTDFLVGKAFCDFEPFHTGEGSYDINNLIAAR-EITGFAS 284
A++ + + ++ GG G+ DF + A+ + +G +++ + AR E+ +A+
Sbjct: 356 NMAQQVIDMAIQIHGGGGLSNDFPLAAAWVNARALRLADGPDEVHRGVVARIELAKYAN 414
>pdb|2FON|A Chain A, X-Ray Crystal Structure Of Leacx1, An Acyl-Coa Oxidase
From Lycopersicon Esculentum (Tomato)
pdb|2FON|B Chain B, X-Ray Crystal Structure Of Leacx1, An Acyl-Coa Oxidase
From Lycopersicon Esculentum (Tomato)
pdb|2FON|C Chain C, X-Ray Crystal Structure Of Leacx1, An Acyl-Coa Oxidase
From Lycopersicon Esculentum (Tomato)
Length = 683
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 87/331 (26%), Positives = 134/331 (40%), Gaps = 61/331 (18%)
Query: 4 IATSGSEAQKRKYLPSLAQLTTMASWALTEPNHGSDASALSTAAT-------KVEGGWIL 56
I G++ Q+ K+LP ++ + +A TE HGS+ L T AT V L
Sbjct: 129 IKGQGTDKQQEKWLPLAYKMQIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTL 188
Query: 57 EGQKRWIGN----STFADVLVVMARNTTTKK---INAFIVK-------KDAPGLTATKIE 102
K W G ST A VV AR T K +N FIV+ K PG+T I
Sbjct: 189 TSSKWWPGGLGKVSTHA---VVYARLITDGKDYGVNGFIVQLRSLEDHKPLPGVTVGDIG 245
Query: 103 NKIG---LRMLQNGDILFKKVFVPDEDRLPGFN------SFQDTNIP--------LSVAR 145
K G + NG + F V +P + L + + ++IP + V +
Sbjct: 246 MKFGNGAYNSMDNGVLSFDHVRIPRDQMLMRVSQVTKEGKYVQSDIPRQLLYGTMVYVRQ 305
Query: 146 VMVAWQTIGISIGVYDMCYRYLMERKQFGA-------PLAAFQITQQKLAQMLGNIQAMN 198
+VA ++ +S V + RY R+QFG+ + ++ Q +L +L + A
Sbjct: 306 SIVADASLAMSRAVC-IATRYSAVRRQFGSQNGGQETQVIDYKTQQNRLFPLLASAYAFR 364
Query: 199 LVG----WRLC----RMCENGKMSLGQASLGKAWVSARARETVALG----RELLGGNGIV 246
VG W R+ N +L +A A + + A G R+L GG+G +
Sbjct: 365 FVGEWLKWLYTDVTQRLAANDFSTLPEAHACTAGLKSLTTSATADGIEECRKLCGGHGYL 424
Query: 247 TDFLVGKAFCDFEPFHTGEGSYDINNLIAAR 277
+ + F + P T EG + L AR
Sbjct: 425 CSSGLPELFAVYVPACTYEGDNVVLQLQVAR 455
>pdb|1W07|A Chain A, Arabidopsis Thaliana Acyl-Coa Oxidase 1
pdb|1W07|B Chain B, Arabidopsis Thaliana Acyl-Coa Oxidase 1
Length = 659
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 80/328 (24%), Positives = 131/328 (39%), Gaps = 55/328 (16%)
Query: 4 IATSGSEAQKRKYLPSLAQLTTMASWALTEPNHGSDASALSTAAT---KVEGGWIL---- 56
I G+E Q++K+L ++ + +A TE HGS+ L T AT K + I
Sbjct: 110 IKGQGTEEQQKKWLSLANKMQIIGCYAQTELGHGSNVQGLETTATLDPKTDEFVIHTPTQ 169
Query: 57 EGQKRWIGN----STFADVLVVMARNTTTKKINAFIVK-------KDAPGLTATKIENKI 105
K W G ST A V + N I+ FIV+ P +T I K+
Sbjct: 170 TASKWWPGGLGKVSTHAVVYARLITNGKDYGIHGFIVQLRSLEDHSPLPNITVGDIGTKM 229
Query: 106 G---LRMLQNGDILFKKVFVPDEDRLPGFN------SFQDTNIP--------LSVARVMV 148
G + NG ++F V +P + L + + +++P + V + +V
Sbjct: 230 GNGAYNSMDNGFLMFDHVRIPRDQMLMRLSKVTREGEYVPSDVPKQLVYGTMVYVRQTIV 289
Query: 149 AWQTIGISIGVYDMCYRYLMERKQFGAP-------LAAFQITQQKLAQMLGNIQAMNLVG 201
A + +S V + RY R+QFGA + ++ Q +L +L + A VG
Sbjct: 290 ADASNALSRAVC-IATRYSAVRRQFGAHNGGIETQVIDYKTQQNRLFPLLASAYAFRFVG 348
Query: 202 ----WRLC----RMCENGKMSLGQASLGKAWVSARARETVALG----RELLGGNGIVTDF 249
W R+ + +L +A A + + A G R+L GG+G +
Sbjct: 349 EWLKWLYTDVTERLAASDFATLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLWCS 408
Query: 250 LVGKAFCDFEPFHTGEGSYDINNLIAAR 277
+ + F + P T EG + L AR
Sbjct: 409 GLPELFAVYVPACTYEGDNVVLQLQVAR 436
>pdb|2WBI|A Chain A, Crystal Structure Of Human Acyl-Coa Dehydrogenase 11
pdb|2WBI|B Chain B, Crystal Structure Of Human Acyl-Coa Dehydrogenase 11
Length = 428
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 58/290 (20%), Positives = 121/290 (41%), Gaps = 24/290 (8%)
Query: 1 MLTIATSGSEAQKRKYLPSLAQLTTMASWALTEPN-HGSDASALSTAATKVEGGWILEGQ 59
M + GSE QK+++L L Q + + +TEP+ SDA+ + + + E +++ G+
Sbjct: 124 MEVLHLYGSEEQKKQWLEPLLQGNITSCFCMTEPDVASSDATNIECSIQRDEDSYVINGK 183
Query: 60 KRW---IGNSTFADVLVVMARNTTT-----KKINAFIVKKDAPGLTATKIENKIGLRMLQ 111
K W GN + +V+ R T K+ + +V + PG+ + + G
Sbjct: 184 KWWSSGAGNPK-CKIAIVLGRTQNTSLSRHKQHSMILVPMNTPGVKIIRPLSVFGYTDNF 242
Query: 112 NG---DILFKKVFVPDEDRLPGF-NSFQDTNIPLSVARVMVAWQTIGISIGVYDMCYRYL 167
+G +I F +V VP + + G F+ + L R+ +T+G++ +
Sbjct: 243 HGGHFEIHFNQVRVPATNLILGEGRGFEISQGRLGPGRIHHCMRTVGLAERALQIMCERA 302
Query: 168 MERKQFGAPLAAFQITQQKLAQMLGNIQAMNLVGWRLCRMCENGKMSLGQASLGKAWVSA 227
+R F L A ++ +A+ I+ + L+ + + +LG A K
Sbjct: 303 TQRIAFKKKLYAHEVVAHWIAESRIAIEKIRLLTLKAAHSMD----TLGSAGAKKEIAMI 358
Query: 228 RARETVALGR------ELLGGNGIVTDFLVGKAFCDFEPFHTGEGSYDIN 271
+ A+ + ++ GG G+ D+ + + +G +++
Sbjct: 359 KVAAPRAVSKIVDWAIQVCGGAGVSQDYPLANMYAITRVLRLADGPDEVH 408
>pdb|1IS2|A Chain A, Crystal Structure Of Peroxisomal Acyl-coa Oxidase-ii From
Rat Liver
pdb|1IS2|B Chain B, Crystal Structure Of Peroxisomal Acyl-coa Oxidase-ii From
Rat Liver
pdb|2DDH|A Chain A, Crystal Structure Of Acyl-Coa Oxidase Complexed With
3-Oh-Dodecanoate
Length = 661
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 77/319 (24%), Positives = 115/319 (36%), Gaps = 52/319 (16%)
Query: 9 SEAQKRKYLPSLAQLTTMASWALTEPNHGSDASALSTAATK-------VEGGWILEGQKR 61
+E Q+R ++P+ L ++A TE HG+ L T AT + + K
Sbjct: 117 AEQQERFFMPAW-NLEITGTYAQTEMGHGTHLRGLETTATYDPKTQEFILNSPTVTSIKW 175
Query: 62 WIG----NSTFADVLVVMARNTTTKKINAFIV-------KKDAPGLTATKIENKIGLRML 110
W G S A VL + ++AF+V K PG+T I K G +
Sbjct: 176 WPGGLGKTSNHAIVLAQLITQGECYGLHAFVVPIREIGTHKPLPGITVGDIGPKFGYEEM 235
Query: 111 QNGDILFKKVFVPDEDRLPGFNSFQDTNI---PLS----------VARVMV--AWQTI-- 153
NG + +P E+ L + + PLS V +V A Q++
Sbjct: 236 DNGYLKMDNYRIPRENMLMKYAQVKPDGTYVKPLSNKLTYGTMVFVRSFLVGNAAQSLSK 295
Query: 154 GISIGVYDMCYRYLMERKQFGAP---LAAFQITQQKLAQMLGNIQAMNLVGWRLCRMCEN 210
+I + R E KQ P + FQ Q KL +L A + VG +
Sbjct: 296 ACTIAIRYSAVRRQSEIKQ-SEPEPQILDFQTQQYKLFPLLATAYAFHFVGRYMKETYLR 354
Query: 211 GKMSLGQASLG------------KAWVSARARETVALGRELLGGNGIVTDFLVGKAFCDF 258
S+GQ L KA+ + A + R GG+G + + F
Sbjct: 355 INESIGQGDLSELPELHALTAGLKAFTTWTANAGIEECRMACGGHGYSHSSGIPNIYVTF 414
Query: 259 EPFHTGEGSYDINNLIAAR 277
P T EG + L AR
Sbjct: 415 TPACTFEGENTVMMLQTAR 433
>pdb|3M9V|A Chain A, X-Ray Structure Of A Kijd3 In Complex With Dtdp
Length = 439
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/139 (23%), Positives = 60/139 (43%), Gaps = 8/139 (5%)
Query: 41 SALSTAATKVEGGWILEGQKRWIGNSTFADVLVVMARNTTTK---KINAFIVKKDAPGLT 97
+A++T GGW+L G+K + + V+ AR T ++ + +V +D PG T
Sbjct: 150 TAVTTLRPDGAGGWLLSGRKTLVSMAPVGTHFVINARTDGTDGPPRLASPVVTRDTPGFT 209
Query: 98 ATKIENKIGLRMLQNGDILFKKVFVPDEDRLPGFNSFQDTNIPLSVARVMVAWQTIGISI 157
+ +G+R DI+F +P D + + N + + + + +G+ +
Sbjct: 210 VLDNWDGLGMRASGTVDIVFDDCPIP-ADHVLMRDPVGARNDAVLAGQTVSSVSVLGVYV 268
Query: 158 GV----YDMCYRYLMERKQ 172
GV YD L R +
Sbjct: 269 GVAQAAYDTAVAALERRPE 287
>pdb|4DOY|A Chain A, Crystal Structure Of Dibenzothiophene Desulfurization
Enzyme C
pdb|4DOY|B Chain B, Crystal Structure Of Dibenzothiophene Desulfurization
Enzyme C
pdb|4DOY|C Chain C, Crystal Structure Of Dibenzothiophene Desulfurization
Enzyme C
pdb|4DOY|D Chain D, Crystal Structure Of Dibenzothiophene Desulfurization
Enzyme C
pdb|4DOY|E Chain E, Crystal Structure Of Dibenzothiophene Desulfurization
Enzyme C
pdb|4DOY|F Chain F, Crystal Structure Of Dibenzothiophene Desulfurization
Enzyme C
pdb|4DOY|G Chain G, Crystal Structure Of Dibenzothiophene Desulfurization
Enzyme C
pdb|4DOY|H Chain H, Crystal Structure Of Dibenzothiophene Desulfurization
Enzyme C
Length = 437
Score = 36.2 bits (82), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 45/190 (23%), Positives = 76/190 (40%), Gaps = 14/190 (7%)
Query: 8 GSEAQKRKYLPSLAQLTTMASWALTEPNHGSDASALSTAATKVE-GGWILEGQKRWIGNS 66
GS+ Q+ +AQ A +E N S +AT E GG++L G K + +
Sbjct: 128 GSQEQEEHLYTQIAQNNWWTGNASSENN--SHVLDWKVSATPTEDGGYVLNGTKHFCSGA 185
Query: 67 TFADVL----VVMARNTTTKKINAFIVKKDAPGLTATKIENKIGLRMLQNGDILFKKVFV 122
+D+L VV + I A + G+T IG+R +G F V V
Sbjct: 186 KGSDLLFVFGVVQDDSPQQGAIIAAAIPTSRAGVTPNDDWAAIGMRQTDSGSTDFHNVKV 245
Query: 123 PDEDRLPGFNSF-------QDTNIPLSVARVMVAWQTIGISIGVYDMCYRYLMERKQFGA 175
++ L N+F + ++ +A+++ A +GI+ G D Y + +
Sbjct: 246 EPDEVLGAPNAFVLAFIQSERGSLFAPIAQLIFANVYLGIAHGALDAAREYTRTQARPWT 305
Query: 176 PLAAFQITQQ 185
P Q T+
Sbjct: 306 PAGIQQATED 315
>pdb|3MXL|A Chain A, Crystal Structure Of Nitrososynthase From Micromonospora
Carbonacea Var. Africana
pdb|3MXL|B Chain B, Crystal Structure Of Nitrososynthase From Micromonospora
Carbonacea Var. Africana
pdb|3MXL|C Chain C, Crystal Structure Of Nitrososynthase From Micromonospora
Carbonacea Var. Africana
pdb|3MXL|D Chain D, Crystal Structure Of Nitrososynthase From Micromonospora
Carbonacea Var. Africana
Length = 395
Score = 34.7 bits (78), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 37/74 (50%), Gaps = 3/74 (4%)
Query: 52 GGWILEGQKRWIGNSTFADVLVVMAR---NTTTKKINAFIVKKDAPGLTATKIENKIGLR 108
GGW+L G+K + + A V A+ + + + +V +DAPGLT + +G+R
Sbjct: 150 GGWLLSGRKVLVSMAPIATHFFVHAQRRDDDGSVFLAVPVVHRDAPGLTVLDNWDGLGMR 209
Query: 109 MLQNGDILFKKVFV 122
+++F + V
Sbjct: 210 ASGTLEVVFDRCPV 223
>pdb|3DJL|A Chain A, Crystal Structure Of Alkylation Response Protein E. Coli
Aidb
pdb|3U33|A Chain A, Crystal Structure Of The E. Coli Adaptive Response Protein
Aidb In The Space Group P3(2)
pdb|3U33|B Chain B, Crystal Structure Of The E. Coli Adaptive Response Protein
Aidb In The Space Group P3(2)
pdb|3U33|C Chain C, Crystal Structure Of The E. Coli Adaptive Response Protein
Aidb In The Space Group P3(2)
pdb|3U33|D Chain D, Crystal Structure Of The E. Coli Adaptive Response Protein
Aidb In The Space Group P3(2)
pdb|3U33|E Chain E, Crystal Structure Of The E. Coli Adaptive Response Protein
Aidb In The Space Group P3(2)
pdb|3U33|F Chain F, Crystal Structure Of The E. Coli Adaptive Response Protein
Aidb In The Space Group P3(2)
pdb|3U33|G Chain G, Crystal Structure Of The E. Coli Adaptive Response Protein
Aidb In The Space Group P3(2)
pdb|3U33|H Chain H, Crystal Structure Of The E. Coli Adaptive Response Protein
Aidb In The Space Group P3(2)
pdb|3U33|I Chain I, Crystal Structure Of The E. Coli Adaptive Response Protein
Aidb In The Space Group P3(2)
pdb|3U33|J Chain J, Crystal Structure Of The E. Coli Adaptive Response Protein
Aidb In The Space Group P3(2)
pdb|3U33|K Chain K, Crystal Structure Of The E. Coli Adaptive Response Protein
Aidb In The Space Group P3(2)
pdb|3U33|L Chain L, Crystal Structure Of The E. Coli Adaptive Response Protein
Aidb In The Space Group P3(2)
Length = 541
Score = 32.7 bits (73), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 59/286 (20%), Positives = 114/286 (39%), Gaps = 27/286 (9%)
Query: 9 SEAQKRKYLPSLAQLTTMASWALTEPNHGSDASALSTAATKVE-GGWILEGQKRWIGNST 67
S+ LP + + +TE GSD + +T A ++E G + L G K W +
Sbjct: 162 SDRYDSHLLPGGQKRGLLIGMGMTEKQGGSDVMSNTTRAERLEDGSYRLVGHK-WFFSVP 220
Query: 68 FADVLVVMARNTTTKKINAFIVKKDAP-----GLTATKIENKIGLRMLQNGDILFKKVFV 122
+D +V+A+ T ++ F V + P + ++++K+G R + ++ F
Sbjct: 221 QSDAHLVLAQ--TAGGLSCFFVPRFLPDGQRNAIRLERLKDKLGNRSNASCEVEF----- 273
Query: 123 PDEDRLPGFNSFQDTNIPL-----SVARVMVAWQTIGISIGVYDMCYRYLMERKQFGAPL 177
+D + + I L + R A + + + + + +R FG PL
Sbjct: 274 --QDAIGWLLGLEGEGIRLILKMGGMTRFDCALGSHAMMRRAFSLAIYHAHQRHVFGNPL 331
Query: 178 AAFQITQQKLAQMLGNIQAMNLVGWRLCRMCE---NGKMSLGQ---ASLGKAWVSARARE 231
+ + L++M ++ + +RL R + + K +L K + R
Sbjct: 332 IQQPLMRHVLSRMALQLEGQTALLFRLARAWDRRADAKEALWARLFTPAAKFVICKRGMP 391
Query: 232 TVALGRELLGGNGIVTDFLVGKAFCDFEPFHTGEGSYDINNLIAAR 277
VA E+LGG G + + + + + EGS +I L R
Sbjct: 392 FVAEAMEVLGGIGYCEESELPRLYREMPVNSIWEGSGNIMCLDVLR 437
>pdb|3MKH|A Chain A, Podospora Anserina Nitroalkane Oxidase
pdb|3MKH|B Chain B, Podospora Anserina Nitroalkane Oxidase
pdb|3MKH|C Chain C, Podospora Anserina Nitroalkane Oxidase
pdb|3MKH|D Chain D, Podospora Anserina Nitroalkane Oxidase
Length = 438
Score = 32.0 bits (71), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 48/221 (21%), Positives = 88/221 (39%), Gaps = 39/221 (17%)
Query: 24 TTMASWALTEPNHGSDASALSTAA------TKVEGG-WILEGQKRWIGNST-----FADV 71
+ +AS +EP G A+AL A ++EG W++ G+K W N D+
Sbjct: 127 SPLASLVFSEP--GGVANALEKGAPGFQTTARLEGDEWVINGEKMWATNCAGWDFKGCDL 184
Query: 72 LVVMARNTTT---------KKINAFIVKK---DAPGLTATKIENKI---GLRMLQNGDIL 116
V+ R+ TT K+ +V + D G + ++ + G + +
Sbjct: 185 ACVVCRDATTPLEEGQDPENKVMIILVTRADLDRNGEGSFEVLRHVATPGHTSVSGPHVR 244
Query: 117 FKKVFVPDEDRL-PGFNSFQDTNIPLSVARVMVAWQTIGISIGVYDMCYRYLMERKQFGA 175
+ V VP ++ L P + + V+V +G+ +D ++ E + GA
Sbjct: 245 YTNVRVPTKNVLCPAGQGAKVAFGAFDGSAVLVGAMGVGLMRAAFDAALKFAKEDNRGGA 304
Query: 176 -PLAAFQITQQKLAQMLGNI----QAMNLVGWRLCRMCENG 211
PL + +Q A +L + +A + W+ ENG
Sbjct: 305 VPL----LERQAFADLLSGVKIQTEAARALTWKAAHAMENG 341
>pdb|2C0U|A Chain A, Crystal Structure Of A Covalent Complex Of Nitroalkane
Oxidase Trapped During Substrate Turnover
pdb|2C0U|B Chain B, Crystal Structure Of A Covalent Complex Of Nitroalkane
Oxidase Trapped During Substrate Turnover
pdb|2C0U|C Chain C, Crystal Structure Of A Covalent Complex Of Nitroalkane
Oxidase Trapped During Substrate Turnover
pdb|2C0U|D Chain D, Crystal Structure Of A Covalent Complex Of Nitroalkane
Oxidase Trapped During Substrate Turnover
Length = 439
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 10/62 (16%)
Query: 26 MASWALTEPNHGSD-----ASALSTAATKVEGGWILEGQKRWIGNS-----TFADVLVVM 75
+AS +EPN ++ L T A KV W++ G+K W NS AD+ V+
Sbjct: 128 LASLXHSEPNGTANWLQKGGPGLQTTARKVGNEWVISGEKLWPSNSGGWDYKGADLACVV 187
Query: 76 AR 77
R
Sbjct: 188 CR 189
>pdb|3D9G|A Chain A, Nitroalkane Oxidase: Wild Type Crystallized In A Trapped
State Forming A Cyanoadduct With Fad
pdb|3D9G|B Chain B, Nitroalkane Oxidase: Wild Type Crystallized In A Trapped
State Forming A Cyanoadduct With Fad
pdb|3D9G|C Chain C, Nitroalkane Oxidase: Wild Type Crystallized In A Trapped
State Forming A Cyanoadduct With Fad
pdb|3D9G|D Chain D, Nitroalkane Oxidase: Wild Type Crystallized In A Trapped
State Forming A Cyanoadduct With Fad
Length = 438
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 10/62 (16%)
Query: 26 MASWALTEPNHGSD-----ASALSTAATKVEGGWILEGQKRWIGNS-----TFADVLVVM 75
+AS +EPN ++ L T A KV W++ G+K W NS AD+ V+
Sbjct: 127 LASLMHSEPNGTANWLQKGGPGLQTTARKVGNEWVISGEKLWPSNSGGWDYKGADLACVV 186
Query: 76 AR 77
R
Sbjct: 187 CR 188
>pdb|3D9D|A Chain A, Nitroalkane Oxidase: Mutant D402n Crystallized With
1-Nitrohexane
pdb|3D9D|B Chain B, Nitroalkane Oxidase: Mutant D402n Crystallized With
1-Nitrohexane
pdb|3D9D|C Chain C, Nitroalkane Oxidase: Mutant D402n Crystallized With
1-Nitrohexane
pdb|3D9D|D Chain D, Nitroalkane Oxidase: Mutant D402n Crystallized With
1-Nitrohexane
pdb|3D9E|A Chain A, Nitroalkane Oxidase: Active Site Mutant D402n Crystallized
With 1- Nitrooctane
pdb|3D9E|B Chain B, Nitroalkane Oxidase: Active Site Mutant D402n Crystallized
With 1- Nitrooctane
pdb|3D9E|C Chain C, Nitroalkane Oxidase: Active Site Mutant D402n Crystallized
With 1- Nitrooctane
pdb|3D9E|D Chain D, Nitroalkane Oxidase: Active Site Mutant D402n Crystallized
With 1- Nitrooctane
pdb|3FCJ|A Chain A, Nitroalkane Oxidase: Mutant402n Crystallized With
Nitroethane
pdb|3FCJ|B Chain B, Nitroalkane Oxidase: Mutant402n Crystallized With
Nitroethane
pdb|3FCJ|C Chain C, Nitroalkane Oxidase: Mutant402n Crystallized With
Nitroethane
pdb|3FCJ|D Chain D, Nitroalkane Oxidase: Mutant402n Crystallized With
Nitroethane
Length = 438
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 10/62 (16%)
Query: 26 MASWALTEPNHGSD-----ASALSTAATKVEGGWILEGQKRWIGNS-----TFADVLVVM 75
+AS +EPN ++ L T A KV W++ G+K W NS AD+ V+
Sbjct: 127 LASLMHSEPNGTANWLQKGGPGLQTTARKVGNEWVISGEKLWPSNSGGWDYKGADLACVV 186
Query: 76 AR 77
R
Sbjct: 187 CR 188
>pdb|3D9F|A Chain A, Nitroalkane Oxidase: Active Site Mutant S276a Crystallized
With 1- Nitrohexane
pdb|3D9F|B Chain B, Nitroalkane Oxidase: Active Site Mutant S276a Crystallized
With 1- Nitrohexane
pdb|3D9F|C Chain C, Nitroalkane Oxidase: Active Site Mutant S276a Crystallized
With 1- Nitrohexane
pdb|3D9F|D Chain D, Nitroalkane Oxidase: Active Site Mutant S276a Crystallized
With 1- Nitrohexane
Length = 438
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 5/46 (10%)
Query: 26 MASWALTEPNHGSD-----ASALSTAATKVEGGWILEGQKRWIGNS 66
+AS +EPN ++ L T A KV W++ G+K W NS
Sbjct: 127 LASLMHSEPNGTANWLQKGGPGLQTTARKVGNEWVISGEKLWPSNS 172
>pdb|2REH|A Chain A, Mechanistic And Structural Analyses Of The Roles Of Arg409
And Asp402 In The Reaction Of The Flavoprotein
Nitroalkane Oxidase
pdb|2REH|B Chain B, Mechanistic And Structural Analyses Of The Roles Of Arg409
And Asp402 In The Reaction Of The Flavoprotein
Nitroalkane Oxidase
pdb|2REH|C Chain C, Mechanistic And Structural Analyses Of The Roles Of Arg409
And Asp402 In The Reaction Of The Flavoprotein
Nitroalkane Oxidase
pdb|2REH|D Chain D, Mechanistic And Structural Analyses Of The Roles Of Arg409
And Asp402 In The Reaction Of The Flavoprotein
Nitroalkane Oxidase
Length = 439
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 5/46 (10%)
Query: 26 MASWALTEPNHGSD-----ASALSTAATKVEGGWILEGQKRWIGNS 66
+AS +EPN ++ L T A KV W++ G+K W NS
Sbjct: 128 LASLMHSEPNGTANWLQKGGPGLQTTARKVGNEWVISGEKLWPSNS 173
>pdb|2C12|A Chain A, Crystal Structure Of Nitroalkane Oxidase In Complex With
Spermine, A Competitive Inhibitor
pdb|2C12|B Chain B, Crystal Structure Of Nitroalkane Oxidase In Complex With
Spermine, A Competitive Inhibitor
pdb|2C12|C Chain C, Crystal Structure Of Nitroalkane Oxidase In Complex With
Spermine, A Competitive Inhibitor
pdb|2C12|D Chain D, Crystal Structure Of Nitroalkane Oxidase In Complex With
Spermine, A Competitive Inhibitor
pdb|2C12|E Chain E, Crystal Structure Of Nitroalkane Oxidase In Complex With
Spermine, A Competitive Inhibitor
pdb|2C12|F Chain F, Crystal Structure Of Nitroalkane Oxidase In Complex With
Spermine, A Competitive Inhibitor
Length = 439
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 5/46 (10%)
Query: 26 MASWALTEPNHGSD-----ASALSTAATKVEGGWILEGQKRWIGNS 66
+AS +EPN ++ L T A KV W++ G+K W NS
Sbjct: 128 LASLMHSEPNGTANWLQKGGPGLQTTARKVGNEWVISGEKLWPSNS 173
>pdb|2ZAF|A Chain A, Mechanistic And Structural Analyses Of The Roles Of Arg409
And Asp402 In The Reaction Of The Flavoprotein
Nitroalkane Oxidase
pdb|2ZAF|B Chain B, Mechanistic And Structural Analyses Of The Roles Of Arg409
And Asp402 In The Reaction Of The Flavoprotein
Nitroalkane Oxidase
pdb|2ZAF|C Chain C, Mechanistic And Structural Analyses Of The Roles Of Arg409
And Asp402 In The Reaction Of The Flavoprotein
Nitroalkane Oxidase
pdb|2ZAF|D Chain D, Mechanistic And Structural Analyses Of The Roles Of Arg409
And Asp402 In The Reaction Of The Flavoprotein
Nitroalkane Oxidase
Length = 439
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 10/62 (16%)
Query: 26 MASWALTEPNHGSD-----ASALSTAATKVEGGWILEGQKRWIGNS-----TFADVLVVM 75
+AS +EPN ++ L T A KV W++ G+K W NS AD+ V+
Sbjct: 128 LASLMHSEPNGTANWLQKGGPGLQTTARKVGNEWVISGEKLWPSNSGGWDYKGADLACVV 187
Query: 76 AR 77
R
Sbjct: 188 CR 189
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.133 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,319,856
Number of Sequences: 62578
Number of extensions: 322587
Number of successful extensions: 715
Number of sequences better than 100.0: 53
Number of HSP's better than 100.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 580
Number of HSP's gapped (non-prelim): 54
length of query: 296
length of database: 14,973,337
effective HSP length: 98
effective length of query: 198
effective length of database: 8,840,693
effective search space: 1750457214
effective search space used: 1750457214
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)