Query 022503
Match_columns 296
No_of_seqs 127 out of 1254
Neff 9.5
Searched_HMMs 46136
Date Fri Mar 29 04:02:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022503.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022503hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0139 Short-chain acyl-CoA d 100.0 5E-65 1.1E-69 426.3 19.3 267 2-269 128-398 (398)
2 KOG0140 Medium-chain acyl-CoA 100.0 1.2E-63 2.6E-68 411.6 21.9 282 1-282 117-405 (408)
3 KOG0141 Isovaleryl-CoA dehydro 100.0 3E-59 6.6E-64 385.9 20.6 278 3-280 135-418 (421)
4 PLN02526 acyl-coenzyme A oxida 100.0 1.1E-55 2.3E-60 402.9 33.4 289 3-291 120-408 (412)
5 cd01151 GCD Glutaryl-CoA dehyd 100.0 1.2E-55 2.6E-60 400.1 33.4 280 3-282 104-383 (386)
6 PRK12341 putative acyl-CoA deh 100.0 2.6E-54 5.7E-59 390.7 32.0 278 3-281 95-378 (381)
7 TIGR03203 pimD_small pimeloyl- 100.0 1.1E-54 2.4E-59 391.9 28.4 273 3-278 96-375 (378)
8 cd01157 MCAD Medium chain acyl 100.0 7.4E-54 1.6E-58 387.6 32.1 280 3-282 92-378 (378)
9 cd01160 LCAD Long chain acyl-C 100.0 1.8E-53 4E-58 384.3 32.2 277 3-279 90-371 (372)
10 cd01162 IBD Isobutyryl-CoA deh 100.0 2.4E-53 5.2E-58 383.7 32.4 280 3-282 92-375 (375)
11 cd01156 IVD Isovaleryl-CoA deh 100.0 3.2E-53 6.9E-58 383.3 32.6 279 3-281 94-376 (376)
12 PLN02519 isovaleryl-CoA dehydr 100.0 2.9E-53 6.4E-58 386.3 32.5 280 3-282 120-403 (404)
13 TIGR03207 cyc_hxne_CoA_dh cycl 100.0 2.4E-53 5.3E-58 383.3 30.7 274 3-278 92-370 (372)
14 PRK03354 crotonobetainyl-CoA d 100.0 5.1E-53 1.1E-57 382.1 32.0 279 2-281 95-377 (380)
15 cd01155 ACAD_FadE2 Acyl-CoA de 100.0 1E-52 2.3E-57 381.8 32.1 279 3-281 103-394 (394)
16 PLN02636 acyl-coenzyme A oxida 100.0 3.6E-53 7.8E-58 402.5 30.2 280 2-281 150-485 (686)
17 PRK09463 fadE acyl-CoA dehydro 100.0 6E-53 1.3E-57 401.9 31.4 272 3-275 171-466 (777)
18 PTZ00461 isovaleryl-CoA dehydr 100.0 7.5E-53 1.6E-57 384.3 30.7 277 3-281 129-407 (410)
19 cd01161 VLCAD Very long chain 100.0 2.4E-52 5.3E-57 381.0 30.9 280 3-282 116-407 (409)
20 COG1960 CaiA Acyl-CoA dehydrog 100.0 2.6E-52 5.7E-57 379.4 31.0 283 3-285 103-392 (393)
21 KOG0138 Glutaryl-CoA dehydroge 100.0 6.2E-53 1.3E-57 347.5 22.1 286 2-287 145-432 (432)
22 PRK13026 acyl-CoA dehydrogenas 100.0 8.6E-52 1.9E-56 392.7 31.1 268 3-274 170-464 (774)
23 cd01158 SCAD_SBCAD Short chain 100.0 2.7E-51 5.9E-56 370.3 31.6 279 3-281 91-373 (373)
24 PTZ00460 acyl-CoA dehydrogenas 100.0 1.9E-51 4.1E-56 388.4 31.7 281 2-282 104-432 (646)
25 cd00567 ACAD Acyl-CoA dehydrog 100.0 5.2E-51 1.1E-55 362.2 31.9 276 2-277 46-327 (327)
26 PLN02312 acyl-CoA oxidase 100.0 2.2E-51 4.7E-56 389.5 30.6 280 2-281 162-487 (680)
27 cd01154 AidB Proteins involved 100.0 4.8E-51 1E-55 372.6 31.1 274 2-280 121-417 (418)
28 PRK11561 isovaleryl CoA dehydr 100.0 4.6E-51 1E-55 377.1 30.8 275 3-283 143-443 (538)
29 PLN02876 acyl-CoA dehydrogenas 100.0 2.9E-50 6.3E-55 394.1 32.3 281 2-282 527-819 (822)
30 TIGR03204 pimC_large pimeloyl- 100.0 1.4E-49 3.1E-54 360.8 32.1 275 3-281 99-394 (395)
31 KOG0137 Very-long-chain acyl-C 100.0 8.6E-51 1.9E-55 361.3 21.3 277 3-279 170-458 (634)
32 cd01152 ACAD_fadE6_17_26 Putat 100.0 3.5E-49 7.7E-54 357.1 29.5 273 3-281 95-380 (380)
33 cd01153 ACAD_fadE5 Putative ac 100.0 7.6E-49 1.7E-53 357.6 31.1 273 3-278 95-405 (407)
34 PTZ00456 acyl-CoA dehydrogenas 100.0 6.4E-49 1.4E-53 370.2 30.6 278 2-282 158-481 (622)
35 cd01150 AXO Peroxisomal acyl-C 100.0 5.1E-49 1.1E-53 372.1 27.8 282 2-283 111-446 (610)
36 PLN02443 acyl-coenzyme A oxida 100.0 7.2E-48 1.6E-52 364.7 31.3 281 2-282 108-441 (664)
37 cd01163 DszC Dibenzothiophene 100.0 3.2E-47 7E-52 344.1 26.1 275 3-282 82-374 (377)
38 KOG1469 Predicted acyl-CoA deh 100.0 1.3E-44 2.9E-49 294.1 18.5 281 2-282 90-383 (392)
39 cd01159 NcnH Naphthocyclinone 100.0 2.2E-43 4.9E-48 318.2 20.9 264 3-281 82-370 (370)
40 PTZ00457 acyl-CoA dehydrogenas 100.0 1.2E-40 2.6E-45 306.0 26.3 235 3-272 112-362 (520)
41 KOG0135 Pristanoyl-CoA/acyl-Co 100.0 7.3E-33 1.6E-37 245.1 17.4 279 3-282 135-465 (661)
42 TIGR02309 HpaB-1 4-hydroxyphen 100.0 4.2E-28 9E-33 222.4 24.5 228 12-247 128-391 (477)
43 KOG0136 Acyl-CoA oxidase [Lipi 100.0 6.5E-29 1.4E-33 224.7 17.0 281 2-282 120-449 (670)
44 PF00441 Acyl-CoA_dh_1: Acyl-C 99.9 1.1E-24 2.5E-29 171.5 17.3 149 132-280 2-150 (150)
45 COG2368 Aromatic ring hydroxyl 99.7 1E-15 2.3E-20 135.9 20.3 231 12-247 132-399 (493)
46 PF08028 Acyl-CoA_dh_2: Acyl-C 99.7 1.4E-16 3E-21 123.0 12.8 122 146-267 1-132 (134)
47 TIGR02310 HpaB-2 4-hydroxyphen 99.7 1E-14 2.2E-19 133.9 21.2 227 11-242 136-398 (519)
48 PF02770 Acyl-CoA_dh_M: Acyl-C 99.6 6.8E-16 1.5E-20 98.3 7.3 52 28-79 1-52 (52)
49 PF11794 HpaB_N: 4-hydroxyphen 99.1 3.4E-10 7.3E-15 95.8 10.6 118 11-128 123-263 (264)
50 PF03241 HpaB: 4-hydroxyphenyl 97.4 0.019 4.2E-07 47.3 15.6 71 177-247 44-119 (205)
51 PTZ00457 acyl-CoA dehydrogenas 92.5 2.8 6.1E-05 39.7 12.5 74 173-247 429-503 (520)
52 KOG0137 Very-long-chain acyl-C 90.5 7 0.00015 37.0 12.5 70 173-242 533-603 (634)
53 PRK09463 fadE acyl-CoA dehydro 66.4 1.5E+02 0.0033 29.9 13.3 103 173-282 559-663 (777)
54 PF12584 TRAPPC10: Trafficking 30.4 88 0.0019 24.1 4.0 43 50-102 67-114 (147)
55 PF13051 DUF3912: Protein of u 28.7 1.1E+02 0.0024 19.4 3.3 36 54-89 2-37 (68)
56 PF15631 Imm-NTF2-2: NTF2 fold 21.4 1.1E+02 0.0024 20.2 2.5 18 44-61 23-40 (66)
No 1
>KOG0139 consensus Short-chain acyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=100.00 E-value=5e-65 Score=426.29 Aligned_cols=267 Identities=34% Similarity=0.486 Sum_probs=257.7
Q ss_pred hhhhhcCCHHHHHHHhHhhhccccceeEEecCCCCCCCcCCCeeEEEEECCEEEEEeEEEeecCCCCCCEEEEEEEeCCC
Q 022503 2 LTIATSGSEAQKRKYLPSLAQLTTMASWALTEPNHGSDASALSTAATKVEGGWILEGQKRWIGNSTFADVLVVMARNTTT 81 (296)
Q Consensus 2 ~~l~~~g~~~q~~~~l~~i~~g~~~~~~a~te~~~gs~~~~~~~~a~~~~~g~~l~G~K~~vt~~~~a~~~lv~a~~~~~ 81 (296)
.+|..|||++||+.|+|. ..|+.+++||+|||++|||...+.|+|++++|.|+|||+|.||||+..|++++|++.+++.
T Consensus 128 ~~i~~fGteeqK~~~~P~-~~~d~vgsfAlSEpgaGSDa~A~~T~Ak~~Gd~~viNGsKmWItN~~~A~~~lVfan~d~~ 206 (398)
T KOG0139|consen 128 PLIIQFGTEEQKEKYLPK-LTGDLVGSFALSEPGAGSDAFALKTTAKKDGDDYVINGSKMWITNAGEADWFLVFANADPS 206 (398)
T ss_pred hHHHHhCcHHHHhhhcch-hhccccceeeecCCCCCcchHHhhhhHhhcCCeEEEecceeeecCCcccceEEEEEecChh
Confidence 578999999999977777 4577799999999999999999999999999999999999999999999999999998643
Q ss_pred ---CCeEEEEEeCCCCCeEEeecccccccccccccceEeeeeeeCCCCCCCCC-CChHHhhhhhhHHHHHHHHHHHHHHH
Q 022503 82 ---KKINAFIVKKDAPGLTATKIENKIGLRMLQNGDILFKKVFVPDEDRLPGF-NSFQDTNIPLSVARVMVAWQTIGISI 157 (296)
Q Consensus 82 ---~~~~~flv~~~~~Gv~~~~~~~~~g~~~~~~~~~~f~~v~Vp~~~~l~~~-~~~~~~~~~~~~~r~~~aa~~~G~~~ 157 (296)
+++++|+||++.||+++....+++|||+++++.++|+||+||++++||.+ .|+++..+.++.+|+..+++.+|.++
T Consensus 207 ~~~Kgit~fiV~rd~~Gl~~~k~eDKLGmRaSsTcql~fedVrVpks~IlGe~G~GykyAm~~Ln~gRIgi~AqmlglaQ 286 (398)
T KOG0139|consen 207 KGYKGITCFIVPRDTPGLSLGKKEDKLGMRASSTCQLHFEDVRVPKSSILGEYGKGYKYAIEVLNAGRIGIGAQMLGLAQ 286 (398)
T ss_pred hccCceeEEEeeCCCCCcccCCccccccccccceeeEEeccccccchhhcccCCcchHHHHHhcCccceeehhhhhhhhH
Confidence 78999999999999999999999999999999999999999999999987 79999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhhCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHHHHHHHH
Q 022503 158 GVYDMCYRYLMERKQFGAPLAAFQITQQKLAQMLGNIQAMNLVGWRLCRMCENGKMSLGQASLGKAWVSARARETVALGR 237 (296)
Q Consensus 158 ~~l~~~~~~~~~r~~~~~~~~~~~~~q~~l~~~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~~K~~a~~~a~~~~~~~~ 237 (296)
+|+|.++.|+++|.+||+++.++|.+|++|+++.+++|++|+++|++++.-|.+.|...+++|+|+++++.+..+++.|+
T Consensus 287 ~c~d~tI~Y~q~R~~FGk~l~d~Q~iQhqiA~~~teiEaaRlL~ynaAr~k~~G~pf~keAAMAKl~ase~A~~~t~qCi 366 (398)
T KOG0139|consen 287 GCFDETIPYAQERLQFGKRLLDFQGLQHQIADMATEIEAARLLVYNAARMKDQGLPFVKEAAMAKLYASEVATKTTHQCI 366 (398)
T ss_pred hHHHhhhHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHhhhhhhhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCCCcCcChHHHHhhhcCCcccccchHH
Q 022503 238 ELLGGNGIVTDFLVGKAFCDFEPFHTGEGSYD 269 (296)
Q Consensus 238 ~~~G~~g~~~~~~l~r~~rd~~~~~~~~g~~~ 269 (296)
|+.||.||++++|.+|+|||++...+.+|+++
T Consensus 367 q~lGG~Gyt~d~paek~yRDarI~~IyeGtsn 398 (398)
T KOG0139|consen 367 QWLGGVGYTKDFPAEKFYRDARIGEIYEGTSN 398 (398)
T ss_pred HHHhcccccccccHHHHhhhceeeeeecCCCC
Confidence 99999999999999999999999999999863
No 2
>KOG0140 consensus Medium-chain acyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=100.00 E-value=1.2e-63 Score=411.63 Aligned_cols=282 Identities=32% Similarity=0.470 Sum_probs=273.2
Q ss_pred ChhhhhcCCHHHHHHHhHhhhccccceeEEecCCCCCCCcCCCeeEEEEECCEEEEEeEEEeecCCCCCCEEEEEEEeCC
Q 022503 1 MLTIATSGSEAQKRKYLPSLAQLTTMASWALTEPNHGSDASALSTAATKVEGGWILEGQKRWIGNSTFADVLVVMARNTT 80 (296)
Q Consensus 1 ~~~l~~~g~~~q~~~~l~~i~~g~~~~~~a~te~~~gs~~~~~~~~a~~~~~g~~l~G~K~~vt~~~~a~~~lv~a~~~~ 80 (296)
+++|..+||++||++||++++....++++++|||++|||...+.|+|++.+|.|+|||.|.||||+++|+|++|++|+++
T Consensus 117 ~~pi~~~gneeqKkk~lg~l~~~p~~asYcvTEPgAGSDvagikTka~KkGDeYiiNGsKawItg~G~anwyfVlaRtd~ 196 (408)
T KOG0140|consen 117 AWPIILSGNEEQKKKYLGRLAEEPKVASYCVTEPGAGSDVAGIKTKAEKKGDEYIINGSKAWITGAGHANWYFVLARTDP 196 (408)
T ss_pred hhhehhcCcHHHHHhhhhhhhcchhhhhhhccCCCCCcchhhhhhhhhhcCCEEEEcCceeeeecCCccceEEEEEecCC
Confidence 36788999999999999999999999999999999999999999999999999999999999999999999999999875
Q ss_pred C------CCeEEEEEeCCCCCeEEeecccccccccccccceEeeeeeeCCCCCCCCC-CChHHhhhhhhHHHHHHHHHHH
Q 022503 81 T------KKINAFIVKKDAPGLTATKIENKIGLRMLQNGDILFKKVFVPDEDRLPGF-NSFQDTNIPLSVARVMVAWQTI 153 (296)
Q Consensus 81 ~------~~~~~flv~~~~~Gv~~~~~~~~~g~~~~~~~~~~f~~v~Vp~~~~l~~~-~~~~~~~~~~~~~r~~~aa~~~ 153 (296)
+ ++++.|+|+.++||++.......+|.|.+++-.|+|+||+||.+|+||.+ .|+.+.+..|...|+.++++++
T Consensus 197 ~pk~p~~Kaft~fiVe~dTpGlt~GkKE~nmGqr~sdTR~itFEDvrVP~~Nvlg~~G~GFkvAm~~fd~tRp~vAa~al 276 (408)
T KOG0140|consen 197 DPKTPAGKAFTAFIVEGDTPGLTRGKKEKNMGQRCSDTRGITFEDVRVPKENVLGAPGAGFKVAMGGFDKTRPNVAAGAL 276 (408)
T ss_pred CCCCCCCcceEEEEEeCCCCCcCcChhhhcccccCCCCceeeeeecccchhccccCCCccceehhhhccCCCCchhhhhh
Confidence 3 57999999999999999999999999999999999999999999999877 7899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhhCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHHHH
Q 022503 154 GISIGVYDMCYRYLMERKQFGAPLAAFQITQQKLAQMLGNIQAMNLVGWRLCRMCENGKMSLGQASLGKAWVSARARETV 233 (296)
Q Consensus 154 G~~~~~l~~~~~~~~~r~~~~~~~~~~~~~q~~l~~~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~~K~~a~~~a~~~~ 233 (296)
|.+.++++.+.+|+.+|++||+||++||.+|..|+||.+++|.+|++.+++++.+|++.+....++++|.++++.+.+++
T Consensus 277 G~A~r~ld~a~ky~~eRK~FG~~iA~hQ~vqF~LAdMA~~le~aRL~~~~aa~evd~~r~~sy~aSiAK~fA~D~an~~a 356 (408)
T KOG0140|consen 277 GLAQRCLDEATKYALERKAFGTPIANHQAVQFMLADMAINLELARLMTRNAAWEVDNGRRNSYYASIAKLFATDTANQAA 356 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHhCcChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchHHHHHHHHHhhhhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998888899999999999999999
Q ss_pred HHHHHHhCCCCCcCcChHHHHhhhcCCcccccchHHHHHHHHHHHHhcC
Q 022503 234 ALGRELLGGNGIVTDFLVGKAFCDFEPFHTGEGSYDINNLIAAREITGF 282 (296)
Q Consensus 234 ~~~~~~~G~~g~~~~~~l~r~~rd~~~~~~~~g~~~~~~~~~~~~~l~~ 282 (296)
..++|++||.||.+++|++++.||++.+.+.+|+++++|..|+|.++..
T Consensus 357 t~AvQifGG~Gfn~eYpVeklmRDaki~QIyEGTsqiqRlvIsR~ll~~ 405 (408)
T KOG0140|consen 357 TNAVQIFGGNGFNKEYPVEKLMRDAKIYQIYEGTSQIQRLVISRSLLQK 405 (408)
T ss_pred HHHHHhhccCCccccccHHHHHhhhhhhHhhhchHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999864
No 3
>KOG0141 consensus Isovaleryl-CoA dehydrogenase [Amino acid transport and metabolism; Lipid transport and metabolism]
Probab=100.00 E-value=3e-59 Score=385.88 Aligned_cols=278 Identities=29% Similarity=0.495 Sum_probs=269.0
Q ss_pred hhhhcCCHHHHHHHhHhhhccccceeEEecCCCCCCCcCCCeeEEEEECCEEEEEeEEEeecCCCCCCEEEEEEEeCCC-
Q 022503 3 TIATSGSEAQKRKYLPSLAQLTTMASWALTEPNHGSDASALSTAATKVEGGWILEGQKRWIGNSTFADVLVVMARNTTT- 81 (296)
Q Consensus 3 ~l~~~g~~~q~~~~l~~i~~g~~~~~~a~te~~~gs~~~~~~~~a~~~~~g~~l~G~K~~vt~~~~a~~~lv~a~~~~~- 81 (296)
-|.+.||+|||++|||.+.+|+-+++.|+|||++|||...+.++|++++++|+|||+|.||||++.||.++|.|+++..
T Consensus 135 qlvrnGseeQkekylPkl~sGe~iGalAMsEp~AGSDvv~mK~~Aek~g~~yiLNGsK~witNG~~advliVyAkTd~~a 214 (421)
T KOG0141|consen 135 QLVRNGSEEQKEKYLPKLISGEHIGALAMSEPGAGSDVVSMKLKAEKKGDDYILNGSKFWITNGPDADVLIVYAKTDHSA 214 (421)
T ss_pred HHHhcCCHHHHHhhhhhhhcccccceeeecCCCCCCccceeeeeceecCCcEEecCcEEEEecCCCCcEEEEEEecCCCC
Confidence 4678899999999999999999999999999999999999999999999999999999999999999999999998632
Q ss_pred ----CCeEEEEEeCCCCCeEEeecccccccccccccceEeeeeeeCCCCCCCCC-CChHHhhhhhhHHHHHHHHHHHHHH
Q 022503 82 ----KKINAFIVKKDAPGLTATKIENKIGLRMLQNGDILFKKVFVPDEDRLPGF-NSFQDTNIPLSVARVMVAWQTIGIS 156 (296)
Q Consensus 82 ----~~~~~flv~~~~~Gv~~~~~~~~~g~~~~~~~~~~f~~v~Vp~~~~l~~~-~~~~~~~~~~~~~r~~~aa~~~G~~ 156 (296)
.|+++|+|++..||++..+..+++|||+++++++.|+|++||++++||.. .|+..++.-+...|+.+++..+|.+
T Consensus 215 ~~~~hGIt~FiVEkgm~GFs~~~KLdKlGmrgsdTcELvFed~~vpas~ilg~enkGvYvlMsgLd~ERLvla~gplglm 294 (421)
T KOG0141|consen 215 VPPSHGITAFIVEKGMPGFSTAQKLDKLGMRGSDTCELVFEDCKVPASNILGEENKGVYVLMSGLDLERLVLAAGPLGLM 294 (421)
T ss_pred CCCcCceEEEEEcCCCcccccchhhHhhcCCCCcchheehhhccCcHHHhcCcCCceEEEEecCCChhHhhhccCchHHH
Confidence 68999999999999999999999999999999999999999999999987 6888889999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHHHHHHH
Q 022503 157 IGVYDMCYRYLMERKQFGAPLAAFQITQQKLAQMLGNIQAMNLVGWRLCRMCENGKMSLGQASLGKAWVSARARETVALG 236 (296)
Q Consensus 157 ~~~l~~~~~~~~~r~~~~~~~~~~~~~q~~l~~~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~~K~~a~~~a~~~~~~~ 236 (296)
+.++|.+..|+.+|++||++++.||.+|.+++||.+.+.+.|+.+|.++...|.+......++.+++|++|.+-+|+-++
T Consensus 295 qa~~d~~~~Y~~qR~afgk~ig~fQ~~QgklAdmyT~l~a~Rsyvy~va~~~d~g~~~~kdcag~il~aaE~~tqVald~ 374 (421)
T KOG0141|consen 295 QAALDETFPYAHQRKAFGKKIGHFQLLQGKLADMYTTLCASRSYVYNVARACDAGNVDPKDCAGVILYAAEKATQVALDA 374 (421)
T ss_pred HHHHHHhhhHHHHHHHhCCchhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhhhhhhhhhHhhhhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999998889999999999999999999999
Q ss_pred HHHhCCCCCcCcChHHHHhhhcCCcccccchHHHHHHHHHHHHh
Q 022503 237 RELLGGNGIVTDFLVGKAFCDFEPFHTGEGSYDINNLIAAREIT 280 (296)
Q Consensus 237 ~~~~G~~g~~~~~~l~r~~rd~~~~~~~~g~~~~~~~~~~~~~l 280 (296)
+|++||-||..++|..|++||++.+.+..|++++.+..|+|.+-
T Consensus 375 iQ~~GGnGYineyp~gr~lrDAklyeIgaGTsEirr~lIgRel~ 418 (421)
T KOG0141|consen 375 IQCLGGNGYINEYPTGRLLRDAKLYEIGAGTSEIRRLLIGRELN 418 (421)
T ss_pred HhhccCcccccccchhhhhhhceeeeccCChHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999874
No 4
>PLN02526 acyl-coenzyme A oxidase
Probab=100.00 E-value=1.1e-55 Score=402.95 Aligned_cols=289 Identities=78% Similarity=1.220 Sum_probs=272.9
Q ss_pred hhhhcCCHHHHHHHhHhhhccccceeEEecCCCCCCCcCCCeeEEEEECCEEEEEeEEEeecCCCCCCEEEEEEEeCCCC
Q 022503 3 TIATSGSEAQKRKYLPSLAQLTTMASWALTEPNHGSDASALSTAATKVEGGWILEGQKRWIGNSTFADVLVVMARNTTTK 82 (296)
Q Consensus 3 ~l~~~g~~~q~~~~l~~i~~g~~~~~~a~te~~~gs~~~~~~~~a~~~~~g~~l~G~K~~vt~~~~a~~~lv~a~~~~~~ 82 (296)
+|..+|+++||++||+++++|+.++++++|||+.|+|...+.|++++++|||+|||.|.|+|++..||+++|++++++++
T Consensus 120 ~l~~~g~~~q~~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~gg~~lnG~K~~vs~~~~Ad~~lv~a~~~~~~ 199 (412)
T PLN02526 120 TIALCGSEAQKQKYLPSLAQLDTVACWALTEPDYGSDASSLNTTATKVEGGWILNGQKRWIGNSTFADVLVIFARNTTTN 199 (412)
T ss_pred HHHHhCCHHHHHHHHHHHhCCCeEEEEEecCCCCCCChhhCeeEEEEECCEEEEEEEEeeecCCCccCEEEEEEEeCCCC
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999986556
Q ss_pred CeEEEEEeCCCCCeEEeecccccccccccccceEeeeeeeCCCCCCCCCCChHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 022503 83 KINAFIVKKDAPGLTATKIENKIGLRMLQNGDILFKKVFVPDEDRLPGFNSFQDTNIPLSVARVMVAWQTIGISIGVYDM 162 (296)
Q Consensus 83 ~~~~flv~~~~~Gv~~~~~~~~~g~~~~~~~~~~f~~v~Vp~~~~l~~~~~~~~~~~~~~~~r~~~aa~~~G~~~~~l~~ 162 (296)
++++|+||.+.|||++.+.|+++|++++++++++|+||+||++++++...++......+..+|+.+++.++|+++++++.
T Consensus 200 ~~~~flV~~~~~Gv~~~~~~~~~G~r~t~s~~v~f~~v~Vp~~~~l~~~~~~~~~~~~~~~~r~~~aa~~lG~a~~al~~ 279 (412)
T PLN02526 200 QINGFIVKKGAPGLKATKIENKIGLRMVQNGDIVLKDVFVPDEDRLPGVNSFQDTNKVLAVSRVMVAWQPIGISMGVYDM 279 (412)
T ss_pred CeEEEEEcCCCCCeEcCCCCCccCcCCCCeeEEEEeeEEECHHHhCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999997666777777888999999999999999999999
Q ss_pred HHHHHHhhhhhCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 022503 163 CYRYLMERKQFGAPLAAFQITQQKLAQMLGNIQAMNLVGWRLCRMCENGKMSLGQASLGKAWVSARARETVALGRELLGG 242 (296)
Q Consensus 163 ~~~~~~~r~~~~~~~~~~~~~q~~l~~~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~~K~~a~~~a~~~~~~~~~~~G~ 242 (296)
+++|+++|.+||+|++++|.+|+++++|.+++++++++++++++.+|.+.+....++++|+++++.+.++++.++++|||
T Consensus 280 a~~~a~~R~~fg~~i~~~q~vq~~la~~~~~l~aar~~~~~aa~~~d~~~~~~~~~~~aK~~a~~~a~~v~~~a~~~~Gg 359 (412)
T PLN02526 280 CHRYLKERKQFGAPLAAFQINQEKLVRMLGNIQAMFLVGWRLCKLYESGKMTPGHASLGKAWITKKARETVALGRELLGG 359 (412)
T ss_pred HHHHHHhCeeCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999998765556678999999999999999999999999
Q ss_pred CCCcCcChHHHHhhhcCCcccccchHHHHHHHHHHHHhcCcCCCCCCcc
Q 022503 243 NGIVTDFLVGKAFCDFEPFHTGEGSYDINNLIAAREITGFASFKPTSSA 291 (296)
Q Consensus 243 ~g~~~~~~l~r~~rd~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~ 291 (296)
.||+++++++|+|||++...+++|++++++..+++.++|++++.|.++-
T Consensus 360 ~G~~~~~~l~r~~RD~~~~~~~~G~~ev~~~~i~~~~l~~~~~~~~~~~ 408 (412)
T PLN02526 360 NGILADFLVAKAFCDLEPIYTYEGTYDINALVTGREITGIASFKPAAST 408 (412)
T ss_pred ccccCcCHHHHHHhcccceEecCCHHHHHHHHHHHHHhcCcccCccccc
Confidence 9999999999999999999999999999999999999999988876553
No 5
>cd01151 GCD Glutaryl-CoA dehydrogenase. Glutaryl-CoA dehydrogenase (GCD). GCD is an acyl-CoA dehydrogenase, which catalyzes the oxidative decarboxylation of glutaryl-CoA to crotonyl-CoA and carbon dioxide in the catabolism of lysine, hydroxylysine, and tryptophan. It uses electron transfer flavoprotein (ETF) as an electron acceptor. GCD is a homotetramer. GCD deficiency leads to a severe neurological disorder in humans.
Probab=100.00 E-value=1.2e-55 Score=400.06 Aligned_cols=280 Identities=43% Similarity=0.660 Sum_probs=267.1
Q ss_pred hhhhcCCHHHHHHHhHhhhccccceeEEecCCCCCCCcCCCeeEEEEECCEEEEEeEEEeecCCCCCCEEEEEEEeCCCC
Q 022503 3 TIATSGSEAQKRKYLPSLAQLTTMASWALTEPNHGSDASALSTAATKVEGGWILEGQKRWIGNSTFADVLVVMARNTTTK 82 (296)
Q Consensus 3 ~l~~~g~~~q~~~~l~~i~~g~~~~~~a~te~~~gs~~~~~~~~a~~~~~g~~l~G~K~~vt~~~~a~~~lv~a~~~~~~ 82 (296)
+|..+|+++||++|++++++|+.++++++|||+.|||...+.|+|++++|||+|||.|.|+|++..||+++|++++++++
T Consensus 104 ~l~~~g~~~~~~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~~is~~~~Ad~~lv~ar~~~~~ 183 (386)
T cd01151 104 PIYDFGSEEQKQKYLPKLASGELIGCFGLTEPNHGSDPGGMETRARKDGGGYKLNGSKTWITNSPIADVFVVWARNDETG 183 (386)
T ss_pred HHHHhCCHHHHHHHHHHHhCCCeEEEEEecCCCCCCChhhCeEEEEEECCEEEEEEEEEeecCCCcCCEEEEEEEECCCC
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999987656
Q ss_pred CeEEEEEeCCCCCeEEeecccccccccccccceEeeeeeeCCCCCCCCCCChHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 022503 83 KINAFIVKKDAPGLTATKIENKIGLRMLQNGDILFKKVFVPDEDRLPGFNSFQDTNIPLSVARVMVAWQTIGISIGVYDM 162 (296)
Q Consensus 83 ~~~~flv~~~~~Gv~~~~~~~~~g~~~~~~~~~~f~~v~Vp~~~~l~~~~~~~~~~~~~~~~r~~~aa~~~G~~~~~l~~ 162 (296)
++++|+||++.|||++.+.|+++|+++++++++.|+||+||++++++...++......+...|+.+++.++|+++++++.
T Consensus 184 ~~~~flVp~~~~gv~i~~~~~~~G~~g~~s~~v~f~~v~Vp~~~~l~~~~g~~~~~~~~~~~r~~~aa~~lG~a~~al~~ 263 (386)
T cd01151 184 KIRGFILERGMKGLSAPKIQGKFSLRASITGEIVMDNVFVPEENLLPGAEGLRGPFKCLNNARYGIAWGALGAAEDCYHT 263 (386)
T ss_pred cEEEEEEcCCCCCeecCCCCCCcCCCCCceeEEEEccEEeCHHHcCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78899999999999999999999999999999999999999999998777777777788889999999999999999999
Q ss_pred HHHHHHhhhhhCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 022503 163 CYRYLMERKQFGAPLAAFQITQQKLAQMLGNIQAMNLVGWRLCRMCENGKMSLGQASLGKAWVSARARETVALGRELLGG 242 (296)
Q Consensus 163 ~~~~~~~r~~~~~~~~~~~~~q~~l~~~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~~K~~a~~~a~~~~~~~~~~~G~ 242 (296)
+++|+++|.+||+|++++|.+|+++++|.++++++|++++++++..|.+......++++|+++++.+.++++.+++++||
T Consensus 264 a~~~a~~R~~~g~~i~~~q~vq~~la~~~~~~eaar~l~~~a~~~~d~~~~~~~~~~~~K~~~~~~a~~~~~~a~~~~Gg 343 (386)
T cd01151 264 ARQYVLDRKQFGRPLAAFQLVQKKLADMLTEIALGLLACLRVGRLKDQGKATPEQISLLKRNNCGKALEIARTAREMLGG 343 (386)
T ss_pred HHHHHHhCeecCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999876666788999999999999999999999999
Q ss_pred CCCcCcChHHHHhhhcCCcccccchHHHHHHHHHHHHhcC
Q 022503 243 NGIVTDFLVGKAFCDFEPFHTGEGSYDINNLIAAREITGF 282 (296)
Q Consensus 243 ~g~~~~~~l~r~~rd~~~~~~~~g~~~~~~~~~~~~~l~~ 282 (296)
.||+++++++|+|||++...+++|++++++..+++.++|.
T Consensus 344 ~g~~~~~~l~r~~RD~~~~~~~~G~~~~~~~~i~~~~l~~ 383 (386)
T cd01151 344 NGISDEYHIIRHMVNLESVNTYEGTHDIHALILGRAITGI 383 (386)
T ss_pred CccCCCCHHHHHHHhhhcceecCCHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999986
No 6
>PRK12341 putative acyl-CoA dehydrogenase; Provisional
Probab=100.00 E-value=2.6e-54 Score=390.71 Aligned_cols=278 Identities=27% Similarity=0.371 Sum_probs=260.5
Q ss_pred hhhhcCCHHHHHHHhHhh-hccccceeEEecCCCCCCCcCCCeeEEEEECCEEEEEeEEEeecCCCCCCEEEEEEEeCCC
Q 022503 3 TIATSGSEAQKRKYLPSL-AQLTTMASWALTEPNHGSDASALSTAATKVEGGWILEGQKRWIGNSTFADVLVVMARNTTT 81 (296)
Q Consensus 3 ~l~~~g~~~q~~~~l~~i-~~g~~~~~~a~te~~~gs~~~~~~~~a~~~~~g~~l~G~K~~vt~~~~a~~~lv~a~~~~~ 81 (296)
+|..+|+++||++||+++ .+|+.++++++|||+.|||...+.+++++++|||+|||+|.|+||+..||+++|+++++++
T Consensus 95 ~l~~~g~~~q~~~~l~~~~~~g~~~~~~a~tEp~~gsd~~~~~t~a~~~~gg~~lnG~K~~is~~~~Ad~~~v~a~~~~~ 174 (381)
T PRK12341 95 SMRRFGSAEQLRKTAESTLETGDPAYALALTEPGAGSDNNSATTTYTRKNGKVYLNGQKTFITGAKEYPYMLVLARDPQP 174 (381)
T ss_pred HHHHhCCHHHHHHHhHHHhhCCCeEEEEEecCCCCCCchhhCeeEEEEeCCEEEEEeEEEEEcCCccCCEEEEEEEcCCC
Confidence 567899999999999999 5999889999999999999999999999999999999999999999999999999997532
Q ss_pred ----CCeEEEEEeCCCCCeEEeecccccccccccccceEeeeeeeCCCCCCCCC-CChHHhhhhhhHHHHHHHHHHHHHH
Q 022503 82 ----KKINAFIVKKDAPGLTATKIENKIGLRMLQNGDILFKKVFVPDEDRLPGF-NSFQDTNIPLSVARVMVAWQTIGIS 156 (296)
Q Consensus 82 ----~~~~~flv~~~~~Gv~~~~~~~~~g~~~~~~~~~~f~~v~Vp~~~~l~~~-~~~~~~~~~~~~~r~~~aa~~~G~~ 156 (296)
.++++|+||.+.|||++ ..|+++|++++++++++|+||+||++++||.. .++......+..+|+.++++++|++
T Consensus 175 ~~~~~~~~~~lV~~~~~gv~~-~~~~~~G~~~~~~~~v~~~~v~Vp~~~~lg~~~~g~~~~~~~~~~~r~~~aa~~lG~a 253 (381)
T PRK12341 175 KDPKKAFTLWWVDSSKPGIKI-NPLHKIGWHMLSTCEVYLDNVEVEESDLVGEEGMGFLNVMYNFEMERLINAARSLGFA 253 (381)
T ss_pred CCCCCceEEEEEeCCCCceee-cccccccCCCCCceEEEECcEEecHHHcCCCCChHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 35789999999999999 56899999999999999999999999999876 5676666778889999999999999
Q ss_pred HHHHHHHHHHHHhhhhhCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHHHHHHH
Q 022503 157 IGVYDMCYRYLMERKQFGAPLAAFQITQQKLAQMLGNIQAMNLVGWRLCRMCENGKMSLGQASLGKAWVSARARETVALG 236 (296)
Q Consensus 157 ~~~l~~~~~~~~~r~~~~~~~~~~~~~q~~l~~~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~~K~~a~~~a~~~~~~~ 236 (296)
+++++.+++|+++|.+||+|+.++|.+|++++++.+++++++++++++++..|++.+....++++|+++++.+.++++.+
T Consensus 254 ~~al~~~~~~~~~R~~~g~~i~~~~~v~~~la~~~~~~~aar~~~~~a~~~~d~~~~~~~~~~~aK~~~~~~a~~v~~~~ 333 (381)
T PRK12341 254 ECAFEDAARYANQRIQFGKPIGHNQLIQEKLTLMAIKIENMRNMVYKVAWQADNGQSLRTSAALAKLYCARTAMEVIDDA 333 (381)
T ss_pred HHHHHHHHHHHHhhhCCCccHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999988876666778999999999999999999
Q ss_pred HHHhCCCCCcCcChHHHHhhhcCCcccccchHHHHHHHHHHHHhc
Q 022503 237 RELLGGNGIVTDFLVGKAFCDFEPFHTGEGSYDINNLIAAREITG 281 (296)
Q Consensus 237 ~~~~G~~g~~~~~~l~r~~rd~~~~~~~~g~~~~~~~~~~~~~l~ 281 (296)
++++||.||.++++++|+|||++...+++|++++++..+++.+++
T Consensus 334 ~~~~Gg~g~~~~~~l~r~~RD~~~~~~~~g~~~~~~~~i~~~~~~ 378 (381)
T PRK12341 334 IQIMGGLGYTDEARVSRFWRDVRCERIGGGTDEIMIYIAGRQILK 378 (381)
T ss_pred HHHhcCcccCCCCHHHHHHHHhhcceecCCHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999875
No 7
>TIGR03203 pimD_small pimeloyl-CoA dehydrogenase, small subunit. Members of this protein family are the PimD proteins of species such as Rhodopseudomonas palustris, Bradyrhizobium japonicum. The pimFABCDE operon encodes proteins for the metabolism of straight chain dicarboxylates of seven to fourteen carbons. Especially relevant is pimeloyl-CoA, basis of the gene symbol, as it is a catabolite of benzoyl-CoA degradation, which occurs in Rhodopseudomonas palustris.
Probab=100.00 E-value=1.1e-54 Score=391.89 Aligned_cols=273 Identities=23% Similarity=0.317 Sum_probs=253.5
Q ss_pred hhhhcCCHHHHHHHhHhhhccccceeEEecCCCCCCCcCCCeeEEEEECCEEEEEeEEEeecCCCCCCEEEEEEEeCC--
Q 022503 3 TIATSGSEAQKRKYLPSLAQLTTMASWALTEPNHGSDASALSTAATKVEGGWILEGQKRWIGNSTFADVLVVMARNTT-- 80 (296)
Q Consensus 3 ~l~~~g~~~q~~~~l~~i~~g~~~~~~a~te~~~gs~~~~~~~~a~~~~~g~~l~G~K~~vt~~~~a~~~lv~a~~~~-- 80 (296)
+|..+|+++||++|||++++|+.++++++|||+.|||...+.|++++++|+|+|||+|.|||++..||+++|++++++
T Consensus 96 ~l~~~g~~~qk~~~L~~l~~G~~~~a~a~tEp~~gsd~~~~~t~a~~~g~~~~l~G~K~~vt~a~~Ad~~lv~ar~~~~~ 175 (378)
T TIGR03203 96 FLRHAGSAAQKAAHLPGIIDGSKTFAFAQLEKNSRYDLGDVSTTAKKTGDGWVIDGEKFVVLNGETADTLIVTARTKGAR 175 (378)
T ss_pred HHHHcCCHHHHHHHHHHHhCCChhheeeecCCCCCCCcccceEEEEEcCCEEEEEeEEEEecCCccCCEEEEEEecCCCC
Confidence 567899999999999999999999999999999999999999999999999999999999999999999999999753
Q ss_pred --CCCeEEEEEeCCCCCeEEeecccccccccccccceEeeeeeeCCCCCCCCC-CChHHhhhhhhHHHHHHHHHHHHHHH
Q 022503 81 --TKKINAFIVKKDAPGLTATKIENKIGLRMLQNGDILFKKVFVPDEDRLPGF-NSFQDTNIPLSVARVMVAWQTIGISI 157 (296)
Q Consensus 81 --~~~~~~flv~~~~~Gv~~~~~~~~~g~~~~~~~~~~f~~v~Vp~~~~l~~~-~~~~~~~~~~~~~r~~~aa~~~G~~~ 157 (296)
.+++++|+||++.|||++.+.+.++|+ .++++.|+||+||+++++|.. .++..+...+...|+.+++.++|+++
T Consensus 176 ~~~~g~~~flV~~~~~Gv~~~~~~~~~g~---~~~~l~fd~v~vp~~~~lg~~~~g~~~~~~~l~~~r~~~aa~~~G~a~ 252 (378)
T TIGR03203 176 RDRTGIGVFLVPAGAKGVTIKGYPTQDGL---HAADITFTGVVVGADAAIGDPENALPLIERVVDDARAALCAEAVGLMD 252 (378)
T ss_pred CCCCceEEEEEECCCCCceeccccccCCC---ceeeEEECCCcccHHhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 257899999999999999776666665 468999999999999999876 67888889999999999999999999
Q ss_pred HHHHHHHHHHHhhhhhCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--CChhHHHHHHHHHHHHHHHHHHH
Q 022503 158 GVYDMCYRYLMERKQFGAPLAAFQITQQKLAQMLGNIQAMNLVGWRLCRMCENGK--MSLGQASLGKAWVSARARETVAL 235 (296)
Q Consensus 158 ~~l~~~~~~~~~r~~~~~~~~~~~~~q~~l~~~~~~~~a~~~~~~~~~~~~d~~~--~~~~~~~~~K~~a~~~a~~~~~~ 235 (296)
++++.+++|+++|++||+||++||.+|+++++|.++++++|++++++++..|.+. +....++++|+++++.+.++++.
T Consensus 253 ~al~~a~~ya~~R~qFG~pi~~~Q~vq~~lAdm~~~~e~ar~l~~~aa~~~~~~~~~~~~~~~a~aK~~a~e~a~~va~~ 332 (378)
T TIGR03203 253 ESLKTTVEYIKTRKQFGVPIGSFQVLQHRAADMFVAVEQARSMAMFATMASDFDDAKERANAIAAAKVQIGKSLKFVGQQ 332 (378)
T ss_pred HHHHHHHHHHhcCeecCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999998877532 34567899999999999999999
Q ss_pred HHHHhCCCCCcCcChHHHHhhhcCCcccccchHHHHHHHHHHH
Q 022503 236 GRELLGGNGIVTDFLVGKAFCDFEPFHTGEGSYDINNLIAARE 278 (296)
Q Consensus 236 ~~~~~G~~g~~~~~~l~r~~rd~~~~~~~~g~~~~~~~~~~~~ 278 (296)
++|+|||.||+++++++++|||++...+.+|++++++..++..
T Consensus 333 aiqi~Gg~G~t~e~~~~~~~r~a~~~~~~~G~~~~~~~~~~~~ 375 (378)
T TIGR03203 333 SIQLHGGIGMTMEAKIGHYFKRLTMIEHTFGDTDFHLSRVSAA 375 (378)
T ss_pred HHHhccceeecccchHHHHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999873
No 8
>cd01157 MCAD Medium chain acyl-CoA dehydrogenase. MCADs are mitochondrial beta-oxidation enzymes, which catalyze the alpha,beta dehydrogenation of the corresponding medium chain acyl-CoA by FAD, which becomes reduced. The reduced form of MCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. MCAD is a homotetramer.
Probab=100.00 E-value=7.4e-54 Score=387.60 Aligned_cols=280 Identities=30% Similarity=0.452 Sum_probs=262.3
Q ss_pred hhhhcCCHHHHHHHhHhhhccccceeEEecCCCCCCCcCCCeeEEEEECCEEEEEeEEEeecCCCCCCEEEEEEEeCCC-
Q 022503 3 TIATSGSEAQKRKYLPSLAQLTTMASWALTEPNHGSDASALSTAATKVEGGWILEGQKRWIGNSTFADVLVVMARNTTT- 81 (296)
Q Consensus 3 ~l~~~g~~~q~~~~l~~i~~g~~~~~~a~te~~~gs~~~~~~~~a~~~~~g~~l~G~K~~vt~~~~a~~~lv~a~~~~~- 81 (296)
++..+|+++||++||+.+.+|+.++++++|||+.|+|...+.+++++++|||+|||+|.|+|++..||+++|+++++++
T Consensus 92 ~l~~~g~~~q~~~~l~~~~~G~~~~~~a~tEp~~gs~~~~~~t~a~~~~~g~~l~G~k~~vs~~~~ad~~lv~a~~~~~~ 171 (378)
T cd01157 92 PVIISGNDEQKKKYLGRMTEEPLMCAYCVTEPGAGSDVAGIKTKAEKKGDEYIINGQKMWITNGGKANWYFLLARSDPDP 171 (378)
T ss_pred HHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCCchhcCeEEEEEcCCEEEEeeEEEeecCCccCCEEEEEEEeCCcc
Confidence 3567899999999999999999999999999999999999999999999999999999999999999999999997532
Q ss_pred -----CCeEEEEEeCCCCCeEEeecccccccccccccceEeeeeeeCCCCCCCCC-CChHHhhhhhhHHHHHHHHHHHHH
Q 022503 82 -----KKINAFIVKKDAPGLTATKIENKIGLRMLQNGDILFKKVFVPDEDRLPGF-NSFQDTNIPLSVARVMVAWQTIGI 155 (296)
Q Consensus 82 -----~~~~~flv~~~~~Gv~~~~~~~~~g~~~~~~~~~~f~~v~Vp~~~~l~~~-~~~~~~~~~~~~~r~~~aa~~~G~ 155 (296)
+++++|+||.+.||+++.+.|.++|+++++++++.|+||+||++++++.. .++......+...|+.+++.++|+
T Consensus 172 ~~~~~~~~~~~lv~~~~~gv~~~~~~~~~G~~~~~s~~~~~~~v~Vp~~~~lg~~~~g~~~~~~~~~~~r~~~aa~~lG~ 251 (378)
T cd01157 172 KCPASKAFTGFIVEADTPGIQPGRKELNMGQRCSDTRGITFEDVRVPKENVLIGEGAGFKIAMGAFDKTRPPVAAGAVGL 251 (378)
T ss_pred cCCCCCceEEEEEcCCCCCeeccCcccccCCCCCCceEEEeccEEECHHHcCCCCCchHHHHHHHHhhhHHHHHHHHHHH
Confidence 35789999999999999999999999999999999999999999999865 577777788888999999999999
Q ss_pred HHHHHHHHHHHHHhhhhhCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHHHHHH
Q 022503 156 SIGVYDMCYRYLMERKQFGAPLAAFQITQQKLAQMLGNIQAMNLVGWRLCRMCENGKMSLGQASLGKAWVSARARETVAL 235 (296)
Q Consensus 156 ~~~~l~~~~~~~~~r~~~~~~~~~~~~~q~~l~~~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~~K~~a~~~a~~~~~~ 235 (296)
++++++.+++|+++|.+||+|++++|.+|+++++|.+++++++++++++++.+|.+......++++|+++++.+.++++.
T Consensus 252 a~~~l~~~~~~~~~R~~fg~~i~~~q~vq~~la~~~~~~~aar~~~~~aa~~~d~~~~~~~~~~~aK~~~~~~a~~~~~~ 331 (378)
T cd01157 252 AQRALDEATKYALERKTFGKLIAEHQAVSFMLADMAMKVELARLAYQRAAWEVDSGRRNTYYASIAKAFAADIANQLATD 331 (378)
T ss_pred HHHHHHHHHHHHHhccccCccHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999998876555567889999999999999999
Q ss_pred HHHHhCCCCCcCcChHHHHhhhcCCcccccchHHHHHHHHHHHHhcC
Q 022503 236 GRELLGGNGIVTDFLVGKAFCDFEPFHTGEGSYDINNLIAAREITGF 282 (296)
Q Consensus 236 ~~~~~G~~g~~~~~~l~r~~rd~~~~~~~~g~~~~~~~~~~~~~l~~ 282 (296)
+++++||.||+++++++|+|||++...+++|++++++..|++.+++.
T Consensus 332 a~~~~Gg~g~~~~~~l~r~~Rd~~~~~~~~G~~~~~~~~i~~~~~~~ 378 (378)
T cd01157 332 AVQIFGGNGFNSEYPVEKLMRDAKIYQIYEGTSQIQRLIISREHLGK 378 (378)
T ss_pred HHHHhCCCccCCCCHHHHHHHHHhhceecCCHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999998763
No 9
>cd01160 LCAD Long chain acyl-CoA dehydrogenase. LCAD is an acyl-CoA dehydrogenases (ACAD), which is found in the mitochondria of eukaryotes and in some prokaryotes. It catalyzes the alpha, beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of LCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. LCAD acts as a homodimer.
Probab=100.00 E-value=1.8e-53 Score=384.33 Aligned_cols=277 Identities=25% Similarity=0.410 Sum_probs=261.1
Q ss_pred hhhhcCCHHHHHHHhHhhhccccceeEEecCCCCCCCcCCCeeEEEEECCEEEEEeEEEeecCCCCCCEEEEEEEeCCC-
Q 022503 3 TIATSGSEAQKRKYLPSLAQLTTMASWALTEPNHGSDASALSTAATKVEGGWILEGQKRWIGNSTFADVLVVMARNTTT- 81 (296)
Q Consensus 3 ~l~~~g~~~q~~~~l~~i~~g~~~~~~a~te~~~gs~~~~~~~~a~~~~~g~~l~G~K~~vt~~~~a~~~lv~a~~~~~- 81 (296)
+|..+|+++||++|||++.+|+.++++++|||++|||...+.|++++++|||+|||+|.|+|++..||+++|.++++++
T Consensus 90 ~l~~~g~~~~~~~~l~~~~~g~~~~~~a~tE~~~gsd~~~~~t~a~~~~~g~~l~G~k~~vs~~~~Ad~~~v~a~~~~~~ 169 (372)
T cd01160 90 YITRAGSPEQKERVLPQMVAGKKIGAIAMTEPGAGSDLQGIRTTARKDGDHYVLNGSKTFITNGMLADVVIVVARTGGEA 169 (372)
T ss_pred HHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCCchhhCeEEEEEeCCEEEEeeEEEEecCCCccCEEEEEEEeCCCC
Confidence 4778999999999999999999999999999999999999999999999999999999999999999999999997543
Q ss_pred ---CCeEEEEEeCCCCCeEEeecccccccccccccceEeeeeeeCCCCCCCCC-CChHHhhhhhhHHHHHHHHHHHHHHH
Q 022503 82 ---KKINAFIVKKDAPGLTATKIENKIGLRMLQNGDILFKKVFVPDEDRLPGF-NSFQDTNIPLSVARVMVAWQTIGISI 157 (296)
Q Consensus 82 ---~~~~~flv~~~~~Gv~~~~~~~~~g~~~~~~~~~~f~~v~Vp~~~~l~~~-~~~~~~~~~~~~~r~~~aa~~~G~~~ 157 (296)
+++++|+||++.||+++.+.|+++|+++++++++.|+||+||++++|+.+ .++......+..+|+.+++.++|+++
T Consensus 170 ~~~~~~~~~lv~~~~~gv~~~~~~~~~G~~~~~~~~v~~~~v~Vp~~~~lg~~~~g~~~~~~~~~~~~~~~aa~~lG~a~ 249 (372)
T cd01160 170 RGAGGISLFLVERGTPGFSRGRKLKKMGWKAQDTAELFFDDCRVPAENLLGEENKGFYYLMQNLPQERLLIAAGALAAAE 249 (372)
T ss_pred CCCCceEEEEEeCCCCCeecCCccccccCCCCCeEEEEecceEccHHHcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46889999999999999999999999999999999999999999999876 56777778888999999999999999
Q ss_pred HHHHHHHHHHHhhhhhCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHHHHHHHH
Q 022503 158 GVYDMCYRYLMERKQFGAPLAAFQITQQKLAQMLGNIQAMNLVGWRLCRMCENGKMSLGQASLGKAWVSARARETVALGR 237 (296)
Q Consensus 158 ~~l~~~~~~~~~r~~~~~~~~~~~~~q~~l~~~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~~K~~a~~~a~~~~~~~~ 237 (296)
++++.+++|+++|++||+|+.++|.+|++++++..++++++++++.+++..+.+......++++|+++++.+.++++.++
T Consensus 250 ~al~~a~~~a~~R~~~g~~i~~~q~vq~~la~~~~~~~~a~~~~~~aa~~~~~~~~~~~~~~~aK~~~~~~a~~v~~~a~ 329 (372)
T cd01160 250 FMLEETRNYVKQRKAFGKTLAQLQVVRHKIAELATKVAVTRAFLDNCAWRHEQGRLDVAEASMAKYWATELQNRVAYECV 329 (372)
T ss_pred HHHHHHHHHHHhhhccCccHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998887765566788999999999999999999
Q ss_pred HHhCCCCCcCcChHHHHhhhcCCcccccchHHHHHHHHHHHH
Q 022503 238 ELLGGNGIVTDFLVGKAFCDFEPFHTGEGSYDINNLIAAREI 279 (296)
Q Consensus 238 ~~~G~~g~~~~~~l~r~~rd~~~~~~~~g~~~~~~~~~~~~~ 279 (296)
+++||.||+++++++|+|||++...+++|++++++..|++.+
T Consensus 330 ~~~Gg~g~~~~~~l~r~~Rd~~~~~~~~gt~~~~~~~i~~~~ 371 (372)
T cd01160 330 QLHGGWGYMREYPIARAYRDARVQPIYGGTTEIMKELISRQM 371 (372)
T ss_pred HHhcCceecCCCHHHHHHHHhhcccccCCHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999998864
No 10
>cd01162 IBD Isobutyryl-CoA dehydrogenase. Isobutyryl-CoA dehydrogenase (IBD) catalyzes the alpha, beta- dehydrogenation of short branched chain acyl-CoA intermediates in valine catabolism. It is predicted to be a homotetramer.
Probab=100.00 E-value=2.4e-53 Score=383.73 Aligned_cols=280 Identities=33% Similarity=0.493 Sum_probs=262.7
Q ss_pred hhhhcCCHHHHHHHhHhhhccccceeEEecCCCCCCCcCCCeeEEEEECCEEEEEeEEEeecCCCCCCEEEEEEEeCCC-
Q 022503 3 TIATSGSEAQKRKYLPSLAQLTTMASWALTEPNHGSDASALSTAATKVEGGWILEGQKRWIGNSTFADVLVVMARNTTT- 81 (296)
Q Consensus 3 ~l~~~g~~~q~~~~l~~i~~g~~~~~~a~te~~~gs~~~~~~~~a~~~~~g~~l~G~K~~vt~~~~a~~~lv~a~~~~~- 81 (296)
.|..+|+++|+++|+|++.+|+.++++++|||+.|+|...+.+++++++|||+|||+|.|+|++..||+++|+++.+++
T Consensus 92 ~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tE~~~gsd~~~~~t~a~~~~~g~~l~G~k~~vs~~~~ad~~~v~a~~~~~~ 171 (375)
T cd01162 92 MIDSFGNDEQRERFLPDLCTMEKLASYCLTEPGSGSDAAALRTRAVREGDHYVLNGSKAFISGAGDSDVYVVMARTGGEG 171 (375)
T ss_pred HHHHhCCHHHHHHHHHHHhCCCceeEEEecCCCCCCChhhCEEEEEEeCCEEEEEEEEEEecCCCCCCEEEEEEEecCCC
Confidence 5677899999999999999999999999999999999999999999999999999999999999999999999997542
Q ss_pred -CCeEEEEEeCCCCCeEEeecccccccccccccceEeeeeeeCCCCCCCCC-CChHHhhhhhhHHHHHHHHHHHHHHHHH
Q 022503 82 -KKINAFIVKKDAPGLTATKIENKIGLRMLQNGDILFKKVFVPDEDRLPGF-NSFQDTNIPLSVARVMVAWQTIGISIGV 159 (296)
Q Consensus 82 -~~~~~flv~~~~~Gv~~~~~~~~~g~~~~~~~~~~f~~v~Vp~~~~l~~~-~~~~~~~~~~~~~r~~~aa~~~G~~~~~ 159 (296)
.++++|+||++.|||++.+.|+++|+++++++++.||||+||++++++.. .++......+...|+.+++.++|+++++
T Consensus 172 ~~~~~~~lv~~~~~gv~v~~~~~~~g~~~~~~~~l~f~~v~Vp~~~~lg~~~~g~~~~~~~l~~~r~~~aa~~lG~a~~a 251 (375)
T cd01162 172 PKGISCFVVEKGTPGLSFGANEKKMGWNAQPTRAVIFEDCRVPVENRLGGEGQGFGIAMAGLNGGRLNIASCSLGAAQAA 251 (375)
T ss_pred CCceEEEEEeCCCCCeecCCcccccCCCCCCeeEEEECceEecHHHcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46889999999999999999999999999999999999999999999876 5677777788889999999999999999
Q ss_pred HHHHHHHHHhhhhhCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-ChhHHHHHHHHHHHHHHHHHHHHHH
Q 022503 160 YDMCYRYLMERKQFGAPLAAFQITQQKLAQMLGNIQAMNLVGWRLCRMCENGKM-SLGQASLGKAWVSARARETVALGRE 238 (296)
Q Consensus 160 l~~~~~~~~~r~~~~~~~~~~~~~q~~l~~~~~~~~a~~~~~~~~~~~~d~~~~-~~~~~~~~K~~a~~~a~~~~~~~~~ 238 (296)
++.+++|+++|.+||+|+.++|.+|+++++|.+++++++++++.+++.+|++.+ ....++++|+++++.+.++++.+++
T Consensus 252 l~~~~~~a~~R~~fg~~l~~~~~vq~~la~~~~~l~~a~~~~~~a~~~~~~~~~~~~~~~~~ak~~~~~~a~~~~~~~~~ 331 (375)
T cd01162 252 LDLARAYLEERKQFGKPLADFQALQFKLADMATELVASRLMVRRAASALDRGDPDAVKLCAMAKRFATDECFDVANQALQ 331 (375)
T ss_pred HHHHHHHHHhhhccCccHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999988643 3456788999999999999999999
Q ss_pred HhCCCCCcCcChHHHHhhhcCCcccccchHHHHHHHHHHHHhcC
Q 022503 239 LLGGNGIVTDFLVGKAFCDFEPFHTGEGSYDINNLIAAREITGF 282 (296)
Q Consensus 239 ~~G~~g~~~~~~l~r~~rd~~~~~~~~g~~~~~~~~~~~~~l~~ 282 (296)
++||.||+++++++|+|||++...+++|++++++..+++.+++.
T Consensus 332 ~~Gg~g~~~~~~l~r~~Rd~~~~~~~~G~~~~~~~~~~~~~~~~ 375 (375)
T cd01162 332 LHGGYGYLKDYPVEQYVRDLRVHQILEGTNEIMRLIIARALLTR 375 (375)
T ss_pred HhcccccccCChHHHHHHHhhcceeecCHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999998763
No 11
>cd01156 IVD Isovaleryl-CoA dehydrogenase. Isovaleryl-CoA dehydrogenase (IVD) is an is an acyl-CoA dehydrogenase, which catalyzes the third step in leucine catabolism, the conversion of isovaleryl-CoA (3-methylbutyryl-CoA) into 3-methylcrotonyl-CoA. IVD is a homotetramer and has the greatest affinity for small branched chain substrates.
Probab=100.00 E-value=3.2e-53 Score=383.26 Aligned_cols=279 Identities=32% Similarity=0.525 Sum_probs=263.0
Q ss_pred hhhhcCCHHHHHHHhHhhhccccceeEEecCCCCCCCcCCCeeEEEEECCEEEEEeEEEeecCCCCCCEEEEEEEeCCC-
Q 022503 3 TIATSGSEAQKRKYLPSLAQLTTMASWALTEPNHGSDASALSTAATKVEGGWILEGQKRWIGNSTFADVLVVMARNTTT- 81 (296)
Q Consensus 3 ~l~~~g~~~q~~~~l~~i~~g~~~~~~a~te~~~gs~~~~~~~~a~~~~~g~~l~G~K~~vt~~~~a~~~lv~a~~~~~- 81 (296)
.|..+|+++|+++|++++.+|++++++++|||+.|+|...+.+++++++|||+|||.|.|+|++..||+++|+++++++
T Consensus 94 ~l~~~g~~~~~~~~l~~l~~G~~~~~~a~sEp~~gs~~~~~~t~a~~~~~g~~l~G~k~~vs~~~~a~~~lv~a~~~~~~ 173 (376)
T cd01156 94 QIYRNGSAAQKEKYLPKLISGEHIGALAMSEPNAGSDVVSMKLRAEKKGDRYVLNGSKMWITNGPDADTLVVYAKTDPSA 173 (376)
T ss_pred HHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCCChhhCeEEEEEeCCEEEEEEEEEEecCCCcCCEEEEEEEeCCCC
Confidence 5778999999999999999999999999999999999999999999999999999999999999999999999997643
Q ss_pred --CCeEEEEEeCCCCCeEEeecccccccccccccceEeeeeeeCCCCCCCCC-CChHHhhhhhhHHHHHHHHHHHHHHHH
Q 022503 82 --KKINAFIVKKDAPGLTATKIENKIGLRMLQNGDILFKKVFVPDEDRLPGF-NSFQDTNIPLSVARVMVAWQTIGISIG 158 (296)
Q Consensus 82 --~~~~~flv~~~~~Gv~~~~~~~~~g~~~~~~~~~~f~~v~Vp~~~~l~~~-~~~~~~~~~~~~~r~~~aa~~~G~~~~ 158 (296)
.++++|+||++.|||++.+.|+++|+++++++++.|+||+||++++++.. .++......+...|+.+++.++|++++
T Consensus 174 ~~~~~~~~lv~~~~~gv~~~~~~~~~G~~~~~~~~v~~~~v~Vp~~~~lg~~~~g~~~~~~~~~~~r~~~aa~~lG~a~~ 253 (376)
T cd01156 174 GAHGITAFIVEKGMPGFSRAQKLDKLGMRGSNTCELVFEDCEVPEENILGGENKGVYVLMSGLDYERLVLAGGPIGIMQA 253 (376)
T ss_pred CCCceEEEEEcCCCCCeecCCccccccCCCCCceEEEeCceEecHHHcCCCCCchHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 46889999999999999999999999999999999999999999999875 567777788889999999999999999
Q ss_pred HHHHHHHHHHhhhhhCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHHHHHHHHH
Q 022503 159 VYDMCYRYLMERKQFGAPLAAFQITQQKLAQMLGNIQAMNLVGWRLCRMCENGKMSLGQASLGKAWVSARARETVALGRE 238 (296)
Q Consensus 159 ~l~~~~~~~~~r~~~~~~~~~~~~~q~~l~~~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~~K~~a~~~a~~~~~~~~~ 238 (296)
+++.+++|+++|++||+|++++|.+|++++++.+++++++++++++++.+|.+.......+.+|+++++.+.++++.+++
T Consensus 254 al~~~~~~~~~R~~~g~~i~~~~~v~~~la~~~~~l~aar~~~~~aa~~~d~~~~~~~~~~~~k~~~~~~a~~~~~~a~~ 333 (376)
T cd01156 254 ALDVAIPYAHQRKQFGQPIGEFQLVQGKLADMYTRLNASRSYLYTVAKACDRGNMDPKDAAGVILYAAEKATQVALDAIQ 333 (376)
T ss_pred HHHHHHHHHHHhHhcCcchHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999887655667888999999999999999999
Q ss_pred HhCCCCCcCcChHHHHhhhcCCcccccchHHHHHHHHHHHHhc
Q 022503 239 LLGGNGIVTDFLVGKAFCDFEPFHTGEGSYDINNLIAAREITG 281 (296)
Q Consensus 239 ~~G~~g~~~~~~l~r~~rd~~~~~~~~g~~~~~~~~~~~~~l~ 281 (296)
++||.||+++++++|+|||++...+++|++++++..|++.+++
T Consensus 334 ~~Gg~g~~~~~~l~r~~Rda~~~~~~~gt~~~~~~~i~~~~~~ 376 (376)
T cd01156 334 ILGGNGYINDYPTGRLLRDAKLYEIGAGTSEIRRMVIGRELFK 376 (376)
T ss_pred HhcCcccccCCHHHHHHHHhhcceecCCHHHHHHHHHHHHhhC
Confidence 9999999999999999999999999999999999999998764
No 12
>PLN02519 isovaleryl-CoA dehydrogenase
Probab=100.00 E-value=2.9e-53 Score=386.28 Aligned_cols=280 Identities=30% Similarity=0.544 Sum_probs=263.3
Q ss_pred hhhhcCCHHHHHHHhHhhhccccceeEEecCCCCCCCcCCCeeEEEEECCEEEEEeEEEeecCCCCCCEEEEEEEeCCC-
Q 022503 3 TIATSGSEAQKRKYLPSLAQLTTMASWALTEPNHGSDASALSTAATKVEGGWILEGQKRWIGNSTFADVLVVMARNTTT- 81 (296)
Q Consensus 3 ~l~~~g~~~q~~~~l~~i~~g~~~~~~a~te~~~gs~~~~~~~~a~~~~~g~~l~G~K~~vt~~~~a~~~lv~a~~~~~- 81 (296)
.|..+|+++||++|||.+.+|+.++++++|||+.|+|...+.+++++++|||+|||.|.|+|++..+|+++|+++++++
T Consensus 120 ~l~~~g~~~q~~~~l~~l~~G~~~~~~a~sEp~~gsd~~~~~t~a~~~~~g~~lnG~K~~vs~a~~ad~~~v~a~~~~~~ 199 (404)
T PLN02519 120 QLVRNGTPAQKEKYLPKLISGEHVGALAMSEPNSGSDVVSMKCKAERVDGGYVLNGNKMWCTNGPVAQTLVVYAKTDVAA 199 (404)
T ss_pred HHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCcCCCcccceEEEEEeCCEEEEEeEEEeecCCCcCCEEEEEEEeCCCC
Confidence 5778999999999999999999999999999999999989999999999999999999999999999999999997532
Q ss_pred --CCeEEEEEeCCCCCeEEeecccccccccccccceEeeeeeeCCCCCCCCC-CChHHhhhhhhHHHHHHHHHHHHHHHH
Q 022503 82 --KKINAFIVKKDAPGLTATKIENKIGLRMLQNGDILFKKVFVPDEDRLPGF-NSFQDTNIPLSVARVMVAWQTIGISIG 158 (296)
Q Consensus 82 --~~~~~flv~~~~~Gv~~~~~~~~~g~~~~~~~~~~f~~v~Vp~~~~l~~~-~~~~~~~~~~~~~r~~~aa~~~G~~~~ 158 (296)
.++++|+||++.|||++.+.|+++|+++++++++.|+||+||++++++.. .++......+...|+.+++.++|++++
T Consensus 200 ~~~~~~~~lVp~~~~Gv~~~~~~~~~G~rgt~s~~v~f~~v~Vp~~~~lg~~~~G~~~~~~~~~~~r~~~aa~~lG~a~~ 279 (404)
T PLN02519 200 GSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPEENVLGQEGKGVYVMMSGLDLERLVLAAGPLGLMQA 279 (404)
T ss_pred CCCeeEEEEEeCCCCCeeccCcccccCCCCCCeeEEEeCeEEecHHHcCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45889999999999999999999999999999999999999999999875 567666777888999999999999999
Q ss_pred HHHHHHHHHHhhhhhCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHHHHHHHHH
Q 022503 159 VYDMCYRYLMERKQFGAPLAAFQITQQKLAQMLGNIQAMNLVGWRLCRMCENGKMSLGQASLGKAWVSARARETVALGRE 238 (296)
Q Consensus 159 ~l~~~~~~~~~r~~~~~~~~~~~~~q~~l~~~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~~K~~a~~~a~~~~~~~~~ 238 (296)
+++.+++|+++|.+||+|+.++|.+|+++++|.+++++++++++++++.+|.+.......+.+|+++++.+.+++..+++
T Consensus 280 al~~a~~~a~~R~~~g~pl~~~~~v~~~la~~~~~l~aar~~~~~aa~~~~~~~~~~~~~~~ak~~~~~~a~~~~~~a~~ 359 (404)
T PLN02519 280 CLDVVLPYVRQREQFGRPIGEFQFIQGKLADMYTSLQSSRSYVYSVARDCDNGKVDRKDCAGVILCAAERATQVALQAIQ 359 (404)
T ss_pred HHHHHHHHHHhceeCCccHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999887655667888999999999999999999
Q ss_pred HhCCCCCcCcChHHHHhhhcCCcccccchHHHHHHHHHHHHhcC
Q 022503 239 LLGGNGIVTDFLVGKAFCDFEPFHTGEGSYDINNLIAAREITGF 282 (296)
Q Consensus 239 ~~G~~g~~~~~~l~r~~rd~~~~~~~~g~~~~~~~~~~~~~l~~ 282 (296)
++||.||+++++++|+|||++...+++|++++++..+++.+++.
T Consensus 360 i~Gg~g~~~~~~l~r~~RD~~~~~~~~G~~e~~~~~i~~~~~~~ 403 (404)
T PLN02519 360 CLGGNGYINEYPTGRLLRDAKLYEIGAGTSEIRRMLIGRELFKE 403 (404)
T ss_pred HhCCceecCCChHHHHHHhhhcceeeCCHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999999998764
No 13
>TIGR03207 cyc_hxne_CoA_dh cyclohexanecarboxyl-CoA dehydrogenase. Cyclohex-1-ene-1carboxyl-CoA is an intermediate in the anaerobic degradation of benzoyl-CoA derived from varioius aromatic compounds, in Rhodopseudomonas palustris but not Thauera aromatica. The aliphatic compound cyclohexanecarboxylate, can be converted to the same intermediate in two steps. The first step is its ligation to coenzyme A. The second is the action of this enzyme, cyclohexanecarboxyl-CoA dehydrogenase.
Probab=100.00 E-value=2.4e-53 Score=383.30 Aligned_cols=274 Identities=27% Similarity=0.401 Sum_probs=256.3
Q ss_pred hhhhcCCHHHHHHHhHhhhccccceeEEecCCCCCCCcCCCeeEEEEECCEEEEEeEEEeecCCCCCCEEEEEEEeCCC-
Q 022503 3 TIATSGSEAQKRKYLPSLAQLTTMASWALTEPNHGSDASALSTAATKVEGGWILEGQKRWIGNSTFADVLVVMARNTTT- 81 (296)
Q Consensus 3 ~l~~~g~~~q~~~~l~~i~~g~~~~~~a~te~~~gs~~~~~~~~a~~~~~g~~l~G~K~~vt~~~~a~~~lv~a~~~~~- 81 (296)
+|..+|+++||++|||++.+|+.++++++|||+.|||...+.+++++++|||+|||+|.|||++..||+++|+++++++
T Consensus 92 ~l~~~g~~~~~~~~l~~~~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~g~~lnG~k~~vs~~~~ad~~lv~a~~~~~~ 171 (372)
T TIGR03207 92 ILAQHARPEIAKPWLGQLIAGEALFAIALTEPRGGSDAARLRLRAERDGDDYVLNGEKTSISAADQADAAVVFARTGSEA 171 (372)
T ss_pred HHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCcChhhCEEEEEEeCCEEEEEEEEEEEcCCCcCCEEEEEEEcCCCC
Confidence 4677999999999999999999999999999999999999999999999999999999999999999999999997531
Q ss_pred ---CCeEEEEEeCCCCCeEEeecccccccccccccceEeeeeeeCCCCCCCCC-CChHHhhhhhhHHHHHHHHHHHHHHH
Q 022503 82 ---KKINAFIVKKDAPGLTATKIENKIGLRMLQNGDILFKKVFVPDEDRLPGF-NSFQDTNIPLSVARVMVAWQTIGISI 157 (296)
Q Consensus 82 ---~~~~~flv~~~~~Gv~~~~~~~~~g~~~~~~~~~~f~~v~Vp~~~~l~~~-~~~~~~~~~~~~~r~~~aa~~~G~~~ 157 (296)
.++++|+||++.|||++. .|+++|++++++++++|+||+||++++++.. .++......++..|+.+++.++|+++
T Consensus 172 ~~~~~~~~~lVp~~~~gv~~~-~~~~~G~r~~~~~~v~f~~v~Vp~~~~lg~~~~g~~~~~~~l~~~r~~~a~~~~G~a~ 250 (372)
T TIGR03207 172 EGARGISAFLVPMDLPGITRN-RFDCHGQRAIGRGSIFFENVRVPADHMLGNEGQGFVQVMQGFDFSRALIGLQVLAVAR 250 (372)
T ss_pred CCCCceEEEEEcCCCCCeecC-cchhccCCCCCeeEEEECceeccHHHcCCCCChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357899999999999974 6899999999999999999999999999876 56777777889999999999999999
Q ss_pred HHHHHHHHHHHhhhhhCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHHHHHHHH
Q 022503 158 GVYDMCYRYLMERKQFGAPLAAFQITQQKLAQMLGNIQAMNLVGWRLCRMCENGKMSLGQASLGKAWVSARARETVALGR 237 (296)
Q Consensus 158 ~~l~~~~~~~~~r~~~~~~~~~~~~~q~~l~~~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~~K~~a~~~a~~~~~~~~ 237 (296)
++++.+.+|+++|++||+|+.++|.+|+++++|.+.++++|++++++++.+|.+.+....++++|+++++.+.++++.++
T Consensus 251 ~al~~a~~~~~~R~~fg~~i~~~q~v~~~la~~~~~~~~ar~l~~~aa~~~~~~~~~~~~~~~aK~~~~~~a~~v~~~a~ 330 (372)
T TIGR03207 251 AALDETWRYVAERQAFGKPLSAFQGVSHPLADAETQVEAARLLCLQTLWLKDHGLPHTSEAAMCKWWAPKLAYDVIHQCL 330 (372)
T ss_pred HHHHHHHHHHHhccccCCchhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999887655566789999999999999999999
Q ss_pred HHhCCCCCcCcChHHHHhhhcCCcccccchHHHHHHHHHHH
Q 022503 238 ELLGGNGIVTDFLVGKAFCDFEPFHTGEGSYDINNLIAARE 278 (296)
Q Consensus 238 ~~~G~~g~~~~~~l~r~~rd~~~~~~~~g~~~~~~~~~~~~ 278 (296)
+++||.||+++ +++|+|||++...+++|++++++.+|++.
T Consensus 331 ~v~Gg~g~~~~-~l~r~~rd~~~~~i~~Gt~~~~~~~i~~~ 370 (372)
T TIGR03207 331 LTHGHGGYDRG-DMEQRLRDVLGFQIGDGTAQIMKTIIARH 370 (372)
T ss_pred HHhcCCcCCCc-hHHHHHhHhhheeecCCHHHHHHHHHhhc
Confidence 99999999999 99999999999999999999999998874
No 14
>PRK03354 crotonobetainyl-CoA dehydrogenase; Validated
Probab=100.00 E-value=5.1e-53 Score=382.06 Aligned_cols=279 Identities=27% Similarity=0.404 Sum_probs=259.7
Q ss_pred hhhhhcCCHHHHHHHhHhhhccccceeEEecCCCCCCCcCCCeeEEEEECCEEEEEeEEEeecCCCCCCEEEEEEEeCCC
Q 022503 2 LTIATSGSEAQKRKYLPSLAQLTTMASWALTEPNHGSDASALSTAATKVEGGWILEGQKRWIGNSTFADVLVVMARNTTT 81 (296)
Q Consensus 2 ~~l~~~g~~~q~~~~l~~i~~g~~~~~~a~te~~~gs~~~~~~~~a~~~~~g~~l~G~K~~vt~~~~a~~~lv~a~~~~~ 81 (296)
.+|..+|+++||++|||++++|+.++++++|||+.|||...+.|++++++|||+|||+|.|+|++.+||+++|+++++++
T Consensus 95 ~~l~~~g~~e~~~~~l~~~~~g~~~~~~a~tE~~~gs~~~~~~t~a~~~~~g~~lnG~K~fis~~~~ad~~~v~a~~~~~ 174 (380)
T PRK03354 95 NTFLREGTQEQIDKIMAFRGTGKQMWNSAITEPGAGSDVGSLKTTYTRRNGKVYLNGSKCFITSSAYTPYIVVMARDGAS 174 (380)
T ss_pred HHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCCchhhCEEEEEEeCCEEEEeeEEEEEcCCCcCCEEEEEEEcCCC
Confidence 35778999999999999999999999999999999999999999999999999999999999999999999999997422
Q ss_pred ---CCeEEEEEeCCCCCeEEeecccccccccccccceEeeeeeeCCCCCCCCC-CChHHhhhhhhHHHHHHHHHHHHHHH
Q 022503 82 ---KKINAFIVKKDAPGLTATKIENKIGLRMLQNGDILFKKVFVPDEDRLPGF-NSFQDTNIPLSVARVMVAWQTIGISI 157 (296)
Q Consensus 82 ---~~~~~flv~~~~~Gv~~~~~~~~~g~~~~~~~~~~f~~v~Vp~~~~l~~~-~~~~~~~~~~~~~r~~~aa~~~G~~~ 157 (296)
.++++|+||.+.||+++. .|+++|+++++++++.|+||+||+++++|.+ .++......+...|+.+++.++|+++
T Consensus 175 ~~~~~~~~~lv~~~~~gv~~~-~~~~~G~r~~~~~~v~f~~v~Vp~~~~lg~~g~g~~~~~~~~~~~r~~~aa~~~G~a~ 253 (380)
T PRK03354 175 PDKPVYTEWFVDMSKPGIKVT-KLEKLGLRMDSCCEITFDDVELDEKDMFGREGNGFNRVKEEFDHERFLVALTNYGTAM 253 (380)
T ss_pred CCCCceeEEEEECCCCceEec-cccccCCCCCCeEEEEEccEEecHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356889999999999986 6899999999999999999999999999876 46666666778889999999999999
Q ss_pred HHHHHHHHHHHhhhhhCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHHHHHHHH
Q 022503 158 GVYDMCYRYLMERKQFGAPLAAFQITQQKLAQMLGNIQAMNLVGWRLCRMCENGKMSLGQASLGKAWVSARARETVALGR 237 (296)
Q Consensus 158 ~~l~~~~~~~~~r~~~~~~~~~~~~~q~~l~~~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~~K~~a~~~a~~~~~~~~ 237 (296)
++++.+++|+++|++||+|+.++|.+|+++++|.+++++++++++++++..|.+.......+++|+++++.+.++++.++
T Consensus 254 ~al~~a~~~a~~R~~fg~~i~~~q~vq~~la~~~~~~~aar~l~~~aa~~~~~~~~~~~~~~~aK~~~~~~a~~~~~~~~ 333 (380)
T PRK03354 254 CAFEDAARYANQRVQFGEAIGRFQLIQEKFAHMAIKLNSMKNMLYEAAWKADNGTITSGDAAMCKYFCANAAFEVVDSAM 333 (380)
T ss_pred HHHHHHHHHHHhhhccCccHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999887765667889999999999999999999
Q ss_pred HHhCCCCCcCcChHHHHhhhcCCcccccchHHHHHHHHHHHHhc
Q 022503 238 ELLGGNGIVTDFLVGKAFCDFEPFHTGEGSYDINNLIAAREITG 281 (296)
Q Consensus 238 ~~~G~~g~~~~~~l~r~~rd~~~~~~~~g~~~~~~~~~~~~~l~ 281 (296)
+++|+.||+++++++|+|||++...+++|++++++..+++.+++
T Consensus 334 ~~~Gg~g~~~~~~l~r~~Rd~~~~~~~~G~~~~~~~~i~~~~~~ 377 (380)
T PRK03354 334 QVLGGVGIAGNHRISRFWRDLRVDRVSGGSDEMQILTLGRAVLK 377 (380)
T ss_pred HHhcCceecCCChHHHHHHHhhhhhccCCHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999998864
No 15
>cd01155 ACAD_FadE2 Acyl-CoA dehydrogenases similar to fadE2. FadE2-like Acyl-CoA dehydrogenase (ACAD). Acyl-CoA dehydrogenases (ACAD) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACAD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. ACAD's are generally homotetramers and have an active site glutamate at a conserved position.
Probab=100.00 E-value=1e-52 Score=381.76 Aligned_cols=279 Identities=19% Similarity=0.299 Sum_probs=257.9
Q ss_pred hhhhcCCHHHHHHHhHhhhccccceeEEecCCC-CCCCcCCCeeEEEEECCEEEEEeEEEeecCCCC--CCEEEEEEEeC
Q 022503 3 TIATSGSEAQKRKYLPSLAQLTTMASWALTEPN-HGSDASALSTAATKVEGGWILEGQKRWIGNSTF--ADVLVVMARNT 79 (296)
Q Consensus 3 ~l~~~g~~~q~~~~l~~i~~g~~~~~~a~te~~-~gs~~~~~~~~a~~~~~g~~l~G~K~~vt~~~~--a~~~lv~a~~~ 79 (296)
+|..+|+++||++|||++.+|+.++++++|||+ .|+|...+.+++++++|||+|||+|.|+|++.+ +|+++|+++++
T Consensus 103 ~l~~~g~~~q~~~~l~~l~~G~~~~~~a~tE~~~~gsd~~~~~t~a~~~~~g~~LnG~k~~vs~~~~~~a~~~~v~a~~~ 182 (394)
T cd01155 103 VLHRYGSEEQKKQWLEPLLDGKIRSAFAMTEPDVASSDATNIECSIERDGDDYVINGRKWWSSGAGDPRCKIAIVMGRTD 182 (394)
T ss_pred HHHHhCCHHHHHHHHHHHhCCCeEEEEEeCCCCCCCCchhhCEEEEEEECCEEEEEEEEEEEcCCCCCCCCEEEEEEEeC
Confidence 578899999999999999999999999999997 579988899999999999999999999999954 78999999875
Q ss_pred CC-----CCeEEEEEeCCCCCeEEeeccccccccc--ccccceEeeeeeeCCCCCCCCC-CChHHhhhhhhHHHHHHHHH
Q 022503 80 TT-----KKINAFIVKKDAPGLTATKIENKIGLRM--LQNGDILFKKVFVPDEDRLPGF-NSFQDTNIPLSVARVMVAWQ 151 (296)
Q Consensus 80 ~~-----~~~~~flv~~~~~Gv~~~~~~~~~g~~~--~~~~~~~f~~v~Vp~~~~l~~~-~~~~~~~~~~~~~r~~~aa~ 151 (296)
++ .++++|+||++.||+++.+.|+++|+++ ++++++.|+||+||++++++.+ .++......+...|+..++.
T Consensus 183 ~~~~~~~~~~~~flVp~~~~Gv~i~~~~~~~G~r~~~t~s~~v~f~dv~Vp~~~~lg~~~~g~~~~~~~~~~~r~~~~a~ 262 (394)
T cd01155 183 PDGAPRHRQQSMILVPMDTPGVTIIRPLSVFGYDDAPHGHAEITFDNVRVPASNLILGEGRGFEIAQGRLGPGRIHHCMR 262 (394)
T ss_pred CCcCCCCCceEEEEEeCCCCCeEeeccccccCCCCCCCCeeEEEEccEEecHHHcCCCCChHHHHHHHHhhhhHHHHHHH
Confidence 32 3688999999999999999999999997 5788999999999999999866 56777778888899999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC--ChhHHHHHHHHHHHHH
Q 022503 152 TIGISIGVYDMCYRYLMERKQFGAPLAAFQITQQKLAQMLGNIQAMNLVGWRLCRMCENGKM--SLGQASLGKAWVSARA 229 (296)
Q Consensus 152 ~~G~~~~~l~~~~~~~~~r~~~~~~~~~~~~~q~~l~~~~~~~~a~~~~~~~~~~~~d~~~~--~~~~~~~~K~~a~~~a 229 (296)
++|+++++++.+++|+++|.+||+|++++|.+|+++++|.+.++++|++++++++.++.... ....++++|+++++.+
T Consensus 263 ~lG~a~~al~~~~~~~~~R~~fg~~i~~~q~vq~~la~~~~~l~aar~l~~~aa~~~~~~~~~~~~~~~~~aK~~~~~~a 342 (394)
T cd01155 263 LIGAAERALELMCQRAVSREAFGKKLAQHGVVAHWIAKSRIEIEQARLLVLKAAHMIDTVGNKAARKEIAMIKVAAPRMA 342 (394)
T ss_pred HHHHHHHHHHHHHHHHhcCccCCCcHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999887432 4567899999999999
Q ss_pred HHHHHHHHHHhCCCCCcCcChHHHHhhhcCCcccccchHHHHHHHHHHHHhc
Q 022503 230 RETVALGRELLGGNGIVTDFLVGKAFCDFEPFHTGEGSYDINNLIAAREITG 281 (296)
Q Consensus 230 ~~~~~~~~~~~G~~g~~~~~~l~r~~rd~~~~~~~~g~~~~~~~~~~~~~l~ 281 (296)
.++++.+++++||.||+++++++|+|||++...+++|++++++..+++.+++
T Consensus 343 ~~~~~~a~~~~Gg~g~~~~~~l~r~~Rda~~~~i~~Gt~~~~~~~ia~~~~~ 394 (394)
T cd01155 343 LKIIDRAIQVHGAAGVSQDTPLANMYAWARTLRIADGPDEVHLRSIARMELK 394 (394)
T ss_pred HHHHHHHHHHhcCceecCCCHHHHHHHHHhhceeecCHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999999998753
No 16
>PLN02636 acyl-coenzyme A oxidase
Probab=100.00 E-value=3.6e-53 Score=402.51 Aligned_cols=280 Identities=27% Similarity=0.401 Sum_probs=256.0
Q ss_pred hhhhhcCCHHHHHHHhHhhhccccceeEEecCCCCCCCcCCCeeEEEEE--CCEEEEE-----eEEEeecCCCC-CCEEE
Q 022503 2 LTIATSGSEAQKRKYLPSLAQLTTMASWALTEPNHGSDASALSTAATKV--EGGWILE-----GQKRWIGNSTF-ADVLV 73 (296)
Q Consensus 2 ~~l~~~g~~~q~~~~l~~i~~g~~~~~~a~te~~~gs~~~~~~~~a~~~--~~g~~l~-----G~K~~vt~~~~-a~~~l 73 (296)
.+|..+||++||++|||++.+|+.++||++|||++|||+..++|+|+++ +|+|+|| |.|+||+|++. ||+++
T Consensus 150 ~~I~~~GTeeQk~~~L~~~~~ge~ig~fA~TEpghGSdv~~leTtA~~d~~~defVLntP~~~g~K~wI~na~~~ad~~v 229 (686)
T PLN02636 150 GSVINLGTKKHRDKYFDGIDNLDYPGCFAMTELHHGSNVQGLQTTATFDPLTDEFVINTPNDGAIKWWIGNAAVHGKFAT 229 (686)
T ss_pred HHHHHhCCHHHHHHHHHHHhCCChhhhhhccCCCcccCcccCeeEEEEcCCCCeEEECCCCCCeEEEeecCCcccCCEEE
Confidence 3678899999999999999999999999999999999999999999998 7889999 99999999975 99999
Q ss_pred EEEEeCC---------CCCeEEEEEeCC-------CCCeEEeecccccccccccccceEeeeeeeCCCCCCCCC------
Q 022503 74 VMARNTT---------TKKINAFIVKKD-------APGLTATKIENKIGLRMLQNGDILFKKVFVPDEDRLPGF------ 131 (296)
Q Consensus 74 v~a~~~~---------~~~~~~flv~~~-------~~Gv~~~~~~~~~g~~~~~~~~~~f~~v~Vp~~~~l~~~------ 131 (296)
|+|++.. +.|+++|+||.+ .|||++.+..+++|+++.+++.+.||||+||.+++|+..
T Consensus 230 V~Arl~~~~~~~~~~~~~Gi~~FlVp~r~~~~~~~~PGV~v~~~~~K~G~~g~dng~l~FdnVrVP~~nlLg~~g~v~~~ 309 (686)
T PLN02636 230 VFARLKLPTHDSKGVSDMGVHAFIVPIRDMKTHQVLPGVEIRDCGHKVGLNGVDNGALRFRSVRIPRDNLLNRFGDVSRD 309 (686)
T ss_pred EEEEecCCCCCccCCCCCCeeEEEEecCccccCCCCCCeEeccCCCccCCCCCcceEEEEeeEEECHHHhccccccccCC
Confidence 9999751 358999999987 599999999999999999999999999999999999521
Q ss_pred -----------CChHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhCcc------cccchhHHHHHHHHHHHH
Q 022503 132 -----------NSFQDTNIPLSVARVMVAWQTIGISIGVYDMCYRYLMERKQFGAP------LAAFQITQQKLAQMLGNI 194 (296)
Q Consensus 132 -----------~~~~~~~~~~~~~r~~~aa~~~G~~~~~l~~~~~~~~~r~~~~~~------~~~~~~~q~~l~~~~~~~ 194 (296)
.++......+..+|+.+++.++|+++++++.+++|+..|++||+| |.++|.+|++|+++.+.+
T Consensus 310 G~y~~~~~~~~~gf~~~~~~l~~~R~~iaa~a~g~a~~Al~iAvrYa~~R~qFg~p~~~e~~I~d~q~vQ~~La~~la~~ 389 (686)
T PLN02636 310 GKYTSSLPTINKRFAATLGELVGGRVGLAYGSVGVLKASNTIAIRYSLLRQQFGPPKQPEISILDYQSQQHKLMPMLAST 389 (686)
T ss_pred CcccccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCEeCCCCCCCCCcccccHHHHHHHHHHHHHH
Confidence 356678888999999999999999999999999999999999999 999999999999999999
Q ss_pred HHHH----HHHHHHHHHHHcCC-----CChhHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcCcChHHHHhhhcCCccccc
Q 022503 195 QAMN----LVGWRLCRMCENGK-----MSLGQASLGKAWVSARARETVALGRELLGGNGIVTDFLVGKAFCDFEPFHTGE 265 (296)
Q Consensus 195 ~a~~----~~~~~~~~~~d~~~-----~~~~~~~~~K~~a~~~a~~~~~~~~~~~G~~g~~~~~~l~r~~rd~~~~~~~~ 265 (296)
++++ .+++.+.+..+.+. +....++++|+++++.+.++++.|+|+|||+||+.++++++++||++...+++
T Consensus 390 ~a~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~as~aK~~~t~~a~~~~~~~rq~~GG~Gy~~~~~l~~l~rd~~~~~t~E 469 (686)
T PLN02636 390 YAFHFATEYLVERYSEMKKTHDDQLVADVHALSAGLKAYITSYTAKALSTCREACGGHGYAAVNRFGSLRNDHDIFQTFE 469 (686)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCcCcHHHHHHHhhhheeec
Confidence 9955 56666666655433 24567899999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHhc
Q 022503 266 GSYDINNLIAAREITG 281 (296)
Q Consensus 266 g~~~~~~~~~~~~~l~ 281 (296)
|++++++.++++.+++
T Consensus 470 G~n~Vl~~~iAr~ll~ 485 (686)
T PLN02636 470 GDNTVLLQQVAADLLK 485 (686)
T ss_pred ChHHHHHHHHHHHHHH
Confidence 9999999999998876
No 17
>PRK09463 fadE acyl-CoA dehydrogenase; Reviewed
Probab=100.00 E-value=6e-53 Score=401.92 Aligned_cols=272 Identities=24% Similarity=0.302 Sum_probs=251.6
Q ss_pred hhhhcCCHHHHHHHhHhhhccccceeEEecCCCCCCCcCCCeeE-----EEEECC---EEEEEeEEEeecCCCCCCEEEE
Q 022503 3 TIATSGSEAQKRKYLPSLAQLTTMASWALTEPNHGSDASALSTA-----ATKVEG---GWILEGQKRWIGNSTFADVLVV 74 (296)
Q Consensus 3 ~l~~~g~~~q~~~~l~~i~~g~~~~~~a~te~~~gs~~~~~~~~-----a~~~~~---g~~l~G~K~~vt~~~~a~~~lv 74 (296)
+|.+|||++||++|||++++|+.++|+++|||++|||...+.|+ ++++++ ||+|||+|.|||+++.||+++|
T Consensus 171 lL~~~GteeQK~~yLp~La~Ge~i~afAlTEP~aGSDaa~i~Tta~~~~a~~dGd~~~g~vLNG~K~~IT~a~~Ad~l~V 250 (777)
T PRK09463 171 LLLHYGTDEQKDHYLPRLARGEEIPCFALTSPEAGSDAGSIPDTGVVCKGEWQGEEVLGMRLTWNKRYITLAPIATVLGL 250 (777)
T ss_pred HHHHhCCHHHHHHHHHHHhCCCceeEEEecCCCcCCCcccccccceeeeeeecCCcccceEEEEEEEeeCCCCccCEEEE
Confidence 57899999999999999999999999999999999999888754 345566 6999999999999999999999
Q ss_pred EEEe-CC--------CCCeEEEEEeCCCCCeEEeecccccccccccccceEeeeeeeCCCCCCCC----CCChHHhhhhh
Q 022503 75 MARN-TT--------TKKINAFIVKKDAPGLTATKIENKIGLRMLQNGDILFKKVFVPDEDRLPG----FNSFQDTNIPL 141 (296)
Q Consensus 75 ~a~~-~~--------~~~~~~flv~~~~~Gv~~~~~~~~~g~~~~~~~~~~f~~v~Vp~~~~l~~----~~~~~~~~~~~ 141 (296)
++++ ++ +.++++|+||++.|||++.+.+.++|++ ..++++.|+||+||.+++||. +.|+.++...+
T Consensus 251 ~ar~~dp~~~~g~~~~~Git~fLVp~d~pGV~ig~~~~~lG~r-~~~g~v~fddV~VP~d~lLG~~~~~G~G~~~l~~~L 329 (777)
T PRK09463 251 AFKLYDPDGLLGDKEDLGITCALIPTDTPGVEIGRRHFPLNVP-FQNGPTRGKDVFIPLDYIIGGPKMAGQGWRMLMECL 329 (777)
T ss_pred EEEecCcccccCCCCCCceEEEEEECCCCCeEecccccccCcc-cccceEEeeeeecCHHHhcccccccChHHHHHHHHH
Confidence 9885 22 2479999999999999999999999998 568999999999999999986 46788999999
Q ss_pred hHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhhhCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCChhHHHH
Q 022503 142 SVAR-VMVAWQTIGISIGVYDMCYRYLMERKQFGAPLAAFQITQQKLAQMLGNIQAMNLVGWRLCRMCENGKMSLGQASL 220 (296)
Q Consensus 142 ~~~r-~~~aa~~~G~~~~~l~~~~~~~~~r~~~~~~~~~~~~~q~~l~~~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~ 220 (296)
..+| +.+++.++|+++.+++.+++|+++|++||+||+++|.+|+++++|.+++++++++.+.+++.+|.+......+++
T Consensus 330 ~~gR~i~laA~avG~ar~al~~Av~YA~~R~QFG~pIg~fQaVQ~~LAdma~~~~a~eaar~~~a~~~D~G~~~~~~aA~ 409 (777)
T PRK09463 330 SVGRGISLPSNSTGGAKLAALATGAYARIRRQFKLPIGKFEGIEEPLARIAGNAYLMDAARTLTTAAVDLGEKPSVLSAI 409 (777)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHH
Confidence 9999 899999999999999999999999999999999999999999999999999999999999989887666678899
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCcCc--ChHHHHhhhcCCcccccchHHHHHHHH
Q 022503 221 GKAWVSARARETVALGRELLGGNGIVTD--FLVGKAFCDFEPFHTGEGSYDINNLIA 275 (296)
Q Consensus 221 ~K~~a~~~a~~~~~~~~~~~G~~g~~~~--~~l~r~~rd~~~~~~~~g~~~~~~~~~ 275 (296)
+|+++++.+.++++.+||+|||.||+++ ++++|+|||++...+.+|++++++..+
T Consensus 410 AK~~atE~a~~va~~AmQIhGG~G~~~~~~~~leR~yRdari~~i~eGtn~i~r~~i 466 (777)
T PRK09463 410 AKYHLTERGRQVINDAMDIHGGKGICLGPNNFLARAYQAAPIAITVEGANILTRSLM 466 (777)
T ss_pred HHHHHHHHHHHHHHHHHHHhchhheeCCCCChHHHHHHhCcchheeCcHHHHHHHHH
Confidence 9999999999999999999999999997 899999999999999999999998876
No 18
>PTZ00461 isovaleryl-CoA dehydrogenase; Provisional
Probab=100.00 E-value=7.5e-53 Score=384.31 Aligned_cols=277 Identities=25% Similarity=0.407 Sum_probs=259.4
Q ss_pred hhhhcCCHHHHHHHhHhhhccccceeEEecCCCCCCCcCCCeeEEEEECC-EEEEEeEEEeecCCCCCCEEEEEEEeCCC
Q 022503 3 TIATSGSEAQKRKYLPSLAQLTTMASWALTEPNHGSDASALSTAATKVEG-GWILEGQKRWIGNSTFADVLVVMARNTTT 81 (296)
Q Consensus 3 ~l~~~g~~~q~~~~l~~i~~g~~~~~~a~te~~~gs~~~~~~~~a~~~~~-g~~l~G~K~~vt~~~~a~~~lv~a~~~~~ 81 (296)
+|..+|+++||++|||.+.+|+.++++++|||+.|+|...+.|++++++| ||+|||.|.||||+..||+++|+++++
T Consensus 129 ~l~~~g~~~qk~~~l~~~~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~gg~~L~G~K~~vs~a~~Ad~~lv~a~~~-- 206 (410)
T PTZ00461 129 NFYYSASPAQRARWLPKVLTGEHVGAMGMSEPGAGTDVLGMRTTAKKDSNGNYVLNGSKIWITNGTVADVFLIYAKVD-- 206 (410)
T ss_pred HHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCCChHHCeEEEEEcCCCeEEEEeEEEeECCCccCCEEEEEEEeC--
Confidence 45678999999999999999999999999999999999999999999764 799999999999999999999999975
Q ss_pred CCeEEEEEeCCCCCeEEeecccccccccccccceEeeeeeeCCCCCCCCC-CChHHhhhhhhHHHHHHHHHHHHHHHHHH
Q 022503 82 KKINAFIVKKDAPGLTATKIENKIGLRMLQNGDILFKKVFVPDEDRLPGF-NSFQDTNIPLSVARVMVAWQTIGISIGVY 160 (296)
Q Consensus 82 ~~~~~flv~~~~~Gv~~~~~~~~~g~~~~~~~~~~f~~v~Vp~~~~l~~~-~~~~~~~~~~~~~r~~~aa~~~G~~~~~l 160 (296)
+++++|+||++.|||++.+.|+++|+++++++++.|+||+||++++|+.+ .++......+...|+.+++.++|++++++
T Consensus 207 ~~~~~flVp~~~~Gv~v~~~~~~~G~r~~~~~~l~f~~v~Vp~~~~lg~~g~g~~~~~~~~~~~r~~~aa~~~G~a~~al 286 (410)
T PTZ00461 207 GKITAFVVERGTKGFTQGPKIDKCGMRASHMCQLFFEDVVVPAENLLGEEGKGMVGMMRNLELERVTLAAMAVGIAERSV 286 (410)
T ss_pred CceEEEEEeCCCCCeecCCCCcccCCCCCceEEEEEcceecCHHHhCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45889999999999999999999999999999999999999999999876 56766677788999999999999999999
Q ss_pred HHHHHHHHhhhhhCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHHHHHHHHHHh
Q 022503 161 DMCYRYLMERKQFGAPLAAFQITQQKLAQMLGNIQAMNLVGWRLCRMCENGKMSLGQASLGKAWVSARARETVALGRELL 240 (296)
Q Consensus 161 ~~~~~~~~~r~~~~~~~~~~~~~q~~l~~~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~~K~~a~~~a~~~~~~~~~~~ 240 (296)
+.+++|+++|.+||+|+.++|.+|++++++...+++++++++++++.++.+.+....++++|.++++.+.++++.+++++
T Consensus 287 ~~a~~ya~~R~~fg~~i~~~q~vq~~la~~~~~l~aar~l~~~aa~~~~~~~~~~~~~~~aK~~a~~~a~~v~~~a~qv~ 366 (410)
T PTZ00461 287 ELMTSYASERKAFGKPISNFGQIQRYIAEGYADTEAAKALVYSVSHNVHPGNKNRLGSDAAKLFATPIAKKVADSAIQVM 366 (410)
T ss_pred HHHHHHHHhCeecCcCHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999998877655556778899999999999999999999
Q ss_pred CCCCCcCcChHHHHhhhcCCcccccchHHHHHHHHHHHHhc
Q 022503 241 GGNGIVTDFLVGKAFCDFEPFHTGEGSYDINNLIAAREITG 281 (296)
Q Consensus 241 G~~g~~~~~~l~r~~rd~~~~~~~~g~~~~~~~~~~~~~l~ 281 (296)
||+||+++++++|+|||++...+.+|++++++..|++.+++
T Consensus 367 Gg~G~~~~~~l~r~~Rda~~~~i~~Gt~e~~~~~i~~~~~~ 407 (410)
T PTZ00461 367 GGMGYSRDMPVERLWRDAKLLEIGGGTIEAHHKNITKDLLK 407 (410)
T ss_pred cCcccCCCCHHHHHHHHHhhheeccCHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999998765
No 19
>cd01161 VLCAD Very long chain acyl-CoA dehydrogenase. VLCAD is an acyl-CoA dehydrogenase (ACAD), which is found in the mitochondria of eukaryotes and in some bacteria. It catalyzes the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. VLCAD acts as a homodimer.
Probab=100.00 E-value=2.4e-52 Score=380.97 Aligned_cols=280 Identities=30% Similarity=0.411 Sum_probs=261.2
Q ss_pred hhhhcCCHHHHHHHhHhhhccccceeEEecCCCCCCCcCCCeeEEEEE--CCEEEEEeEEEeecCCCCCCEEEEEEEeCC
Q 022503 3 TIATSGSEAQKRKYLPSLAQLTTMASWALTEPNHGSDASALSTAATKV--EGGWILEGQKRWIGNSTFADVLVVMARNTT 80 (296)
Q Consensus 3 ~l~~~g~~~q~~~~l~~i~~g~~~~~~a~te~~~gs~~~~~~~~a~~~--~~g~~l~G~K~~vt~~~~a~~~lv~a~~~~ 80 (296)
.+..+|+++|+++||+++++|+.++++++|||+.|+|...+.++++++ ++||+|||.|.|+||+..||+++|.+++++
T Consensus 116 ~l~~~g~~~q~~~~l~~l~~G~~~~~~a~tEp~~Gs~~~~~~t~a~~~~~g~g~~l~G~K~~vs~~~~Ad~~lv~ar~~~ 195 (409)
T cd01161 116 GILLFGTEAQKEKYLPKLASGEWIAAFALTEPSSGSDAASIRTTAVLSEDGKHYVLNGSKIWITNGGIADIFTVFAKTEV 195 (409)
T ss_pred HHHHcCCHHHHHHHhHHHhCCCeeEEEEecCCCCCCChhhCeeEEEEcCCCCEEEEEeEEEeecCCCcCCEEEEEEEcCC
Confidence 367789999999999999999999999999999999999999999984 557999999999999999999999998751
Q ss_pred -------CCCeEEEEEeCCCCCeEEeecccccccccccccceEeeeeeeCCCCCCCCC-CChHHhhhhhhHHHHHHHHHH
Q 022503 81 -------TKKINAFIVKKDAPGLTATKIENKIGLRMLQNGDILFKKVFVPDEDRLPGF-NSFQDTNIPLSVARVMVAWQT 152 (296)
Q Consensus 81 -------~~~~~~flv~~~~~Gv~~~~~~~~~g~~~~~~~~~~f~~v~Vp~~~~l~~~-~~~~~~~~~~~~~r~~~aa~~ 152 (296)
.+++++|+||.+.|||++.+.|+++|+++++++++.|+||+||++++++.+ +++......+...|+.+++.+
T Consensus 196 ~~~~g~~~~~~~~flvp~~~~gv~~~~~~~~~G~~g~~s~~v~~~~v~Vp~~~~lg~~g~g~~~~~~~l~~~r~~~aa~~ 275 (409)
T cd01161 196 KDATGSVKDKITAFIVERSFGGVTNGPPEKKMGIKGSNTAEVYFEDVKIPVENVLGEVGDGFKVAMNILNNGRFGMGAAL 275 (409)
T ss_pred CCCCCCCCCceEEEEEeCCCCCcccCCcccccCCCCCCceEEEeccEEECHHHcCCCCChHHHHHHHHHHhHHHHHHHHH
Confidence 146889999999999999999999999999999999999999999999876 567777788999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhhCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--CChhHHHHHHHHHHHHHH
Q 022503 153 IGISIGVYDMCYRYLMERKQFGAPLAAFQITQQKLAQMLGNIQAMNLVGWRLCRMCENGK--MSLGQASLGKAWVSARAR 230 (296)
Q Consensus 153 ~G~~~~~l~~~~~~~~~r~~~~~~~~~~~~~q~~l~~~~~~~~a~~~~~~~~~~~~d~~~--~~~~~~~~~K~~a~~~a~ 230 (296)
+|+++++++.+++|+++|.+||+|+.++|.+|++++++.++++++|++++++++.+|++. +....++++|+++++.+.
T Consensus 276 lG~a~~al~~a~~~a~~R~~fg~~l~~~q~vq~~la~~~~~~~aar~l~~~a~~~~d~~~~~~~~~~~~~aK~~a~~~a~ 355 (409)
T cd01161 276 IGTMKRCIEKAVDYANNRKQFGKKIHEFGLIQEKLANMAILQYATESMAYMTSGNMDRGLKAEYQIEAAISKVFASEAAW 355 (409)
T ss_pred HHHHHHHHHHHHHHHHhceeCCccHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999998865 345678999999999999
Q ss_pred HHHHHHHHHhCCCCCcCcChHHHHhhhcCCcccccchHHHHHHHHHHHHhcC
Q 022503 231 ETVALGRELLGGNGIVTDFLVGKAFCDFEPFHTGEGSYDINNLIAAREITGF 282 (296)
Q Consensus 231 ~~~~~~~~~~G~~g~~~~~~l~r~~rd~~~~~~~~g~~~~~~~~~~~~~l~~ 282 (296)
++++.+++++||.||.++++++|+|||+++..+++|++++++.++++..|+.
T Consensus 356 ~v~~~a~~~~Gg~G~~~~~~l~r~~Rd~~~~~~~~G~~~~~~~~ia~~~l~~ 407 (409)
T cd01161 356 LVVDEAIQIHGGMGFMREYGVERVLRDLRIFRIFEGTNEILRLFIALTGLQH 407 (409)
T ss_pred HHHHHHHHHhcCccccCCCcHHHHHHhhhcceeecCHHHHHHHHHHHHHhhh
Confidence 9999999999999999999999999999999999999999999999998765
No 20
>COG1960 CaiA Acyl-CoA dehydrogenases [Lipid metabolism]
Probab=100.00 E-value=2.6e-52 Score=379.36 Aligned_cols=283 Identities=36% Similarity=0.567 Sum_probs=265.0
Q ss_pred hhhhcCCHHHHHHHhHhhhccccceeEEecCCCCCCCcCCCe-eEEEEECCEEEEEeEEEeecCCCCCCEEEEEEEeCCC
Q 022503 3 TIATSGSEAQKRKYLPSLAQLTTMASWALTEPNHGSDASALS-TAATKVEGGWILEGQKRWIGNSTFADVLVVMARNTTT 81 (296)
Q Consensus 3 ~l~~~g~~~q~~~~l~~i~~g~~~~~~a~te~~~gs~~~~~~-~~a~~~~~g~~l~G~K~~vt~~~~a~~~lv~a~~~~~ 81 (296)
++..||+++||++|||++.+|+.++|+++|||.+|||..... |++++++|+|+|||.|.|+|++..||+++|++++++.
T Consensus 103 ~~~~~g~~~q~~~~l~~~~~G~~~~~~~~tEp~~Gsd~~~~~~t~a~~~~g~~~lnG~K~~is~~~~ad~~~v~Ar~~~~ 182 (393)
T COG1960 103 TILRFGTEEQKRRYLPRLASGELIGAFALTEPGAGSDLASLRTTAAVRDDGDYVLNGQKIWISNAPVADWLLVLARTDPA 182 (393)
T ss_pred HHHHcCCHHHHHHhchhhhCCchhheeeccCCCCCcchhcCceeEEEecCCCEEEEeEEEEEcCCCCCCEEEEEEEcCCc
Confidence 456799999999999999999999999999999999999888 7777766669999999999999999999999998653
Q ss_pred ----CCeEEEEEeCC-CCCeEEeecccccccccccccceEeeeeeeCCCCCCCCC-CChHHhhhhhhHHHHHHHHHHHHH
Q 022503 82 ----KKINAFIVKKD-APGLTATKIENKIGLRMLQNGDILFKKVFVPDEDRLPGF-NSFQDTNIPLSVARVMVAWQTIGI 155 (296)
Q Consensus 82 ----~~~~~flv~~~-~~Gv~~~~~~~~~g~~~~~~~~~~f~~v~Vp~~~~l~~~-~~~~~~~~~~~~~r~~~aa~~~G~ 155 (296)
+++++|+||++ .||+++.+.|...|+++++++++.|+||+||.++++|.. .++......+...|+.+++.++|+
T Consensus 183 ~~~~~gis~flV~~~~~~Gv~~~~~~~~~G~r~~~~~~v~f~~v~vp~~~lig~~~~g~~~~~~~l~~~r~~~aa~~~G~ 262 (393)
T COG1960 183 PGKHKGISLFLVPKDLTPGVSVGPILKKMGLRGSATGEVFFDDVRVPAENLLGEEGDGFKIAMETLNVERLGIAAQALGI 262 (393)
T ss_pred ccccCceEEEEEeCCCCCCeeeccccCcCCcCCCCeeEEEECCeeccHHHcCCcCCchHHHHHHhhchHHHHHHHHHHHH
Confidence 57999999999 599999998864499999999999999999999999855 688999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhhCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHHHHHH
Q 022503 156 SIGVYDMCYRYLMERKQFGAPLAAFQITQQKLAQMLGNIQAMNLVGWRLCRMCENGKMSLGQASLGKAWVSARARETVAL 235 (296)
Q Consensus 156 ~~~~l~~~~~~~~~r~~~~~~~~~~~~~q~~l~~~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~~K~~a~~~a~~~~~~ 235 (296)
++++++.+.+|+++|++|++|++++|.+|++++++.+++++++++++++++..|.+.+....++++|+++++.+.++++.
T Consensus 263 a~~al~~~~~ya~~R~~fg~~i~~~~~vq~~la~~~~~~~a~r~~~~~aa~~~~~~~~~~~~~~~aK~~a~~~~~~~~~~ 342 (393)
T COG1960 263 AEAALEEAVAYARERKQFGRPIADFQLVQFKLADMAAELEAARLLVLRAAELADAGDDAGAEAAMAKLFATEAALEVADE 342 (393)
T ss_pred HHHHHHHHHHHHHHhHhcCCchhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999887645578999999999999999999
Q ss_pred HHHHhCCCCCcCcChHHHHhhhcCCcccccchHHHHHHHHHHHHhcCcCC
Q 022503 236 GRELLGGNGIVTDFLVGKAFCDFEPFHTGEGSYDINNLIAAREITGFASF 285 (296)
Q Consensus 236 ~~~~~G~~g~~~~~~l~r~~rd~~~~~~~~g~~~~~~~~~~~~~l~~~~~ 285 (296)
++|++||.||+++++++|+|||++...+++|++++++..+++.+++.++.
T Consensus 343 a~q~~Gg~g~~~e~~i~r~~rda~~~~i~~Gt~~i~~~~i~~~~~~~~~~ 392 (393)
T COG1960 343 AVQVHGGYGYTEEYPVERYYRDARILRIYEGTSEIQRLIIARRLLGLPAG 392 (393)
T ss_pred HHHHhcCCccccCchHHHHHHHhHhheeccCHHHHHHHHHHHHHhhhccC
Confidence 99999999999999999999999999999999999999999999998754
No 21
>KOG0138 consensus Glutaryl-CoA dehydrogenase [Amino acid transport and metabolism]
Probab=100.00 E-value=6.2e-53 Score=347.52 Aligned_cols=286 Identities=44% Similarity=0.601 Sum_probs=276.1
Q ss_pred hhhhhcCCHHHHHHHhHhhhccccceeEEecCCCCCCCcCCCeeEEEEECCE--EEEEeEEEeecCCCCCCEEEEEEEeC
Q 022503 2 LTIATSGSEAQKRKYLPSLAQLTTMASWALTEPNHGSDASALSTAATKVEGG--WILEGQKRWIGNSTFADVLVVMARNT 79 (296)
Q Consensus 2 ~~l~~~g~~~q~~~~l~~i~~g~~~~~~a~te~~~gs~~~~~~~~a~~~~~g--~~l~G~K~~vt~~~~a~~~lv~a~~~ 79 (296)
.+|..||+++||++|||.+++|+.++||++|||++|||++.++|+|++++.+ |.|||.|.||+|++.||+++|+||.+
T Consensus 145 ~~Iy~~GSE~QkqkYlPslA~g~~igcfgLTEPn~GSdpsgmeT~At~~e~~ktyklNGsKtWI~nsp~aDl~vvwAr~~ 224 (432)
T KOG0138|consen 145 GPIYAYGSEEQKQKYLPSLAKGKLIGCFGLTEPNHGSDPSGMETRATYDESNKTYKLNGSKTWITNSPMADLFVVWARCE 224 (432)
T ss_pred hhHhhcCCHHHHhhhhhhhhcCceeeEEeccCCCCCCCcccccceeEEccCCceEEECCeeeeecCCcccceEEEEEecc
Confidence 5789999999999999999999999999999999999999999999999887 99999999999999999999999987
Q ss_pred CCCCeEEEEEeCCCCCeEEeecccccccccccccceEeeeeeeCCCCCCCCCCChHHhhhhhhHHHHHHHHHHHHHHHHH
Q 022503 80 TTKKINAFIVKKDAPGLTATKIENKIGLRMLQNGDILFKKVFVPDEDRLPGFNSFQDTNIPLSVARVMVAWQTIGISIGV 159 (296)
Q Consensus 80 ~~~~~~~flv~~~~~Gv~~~~~~~~~g~~~~~~~~~~f~~v~Vp~~~~l~~~~~~~~~~~~~~~~r~~~aa~~~G~~~~~ 159 (296)
.++.+.=|+|+++.+|++.-....+.++|.+.++.|..|||+||++++|....++......++..|.++++..+|+++.+
T Consensus 225 t~n~I~GFi~~k~~~GL~apkI~gK~sLRas~tG~Ilmd~V~VPeE~~LPg~~s~qgpf~cLnnaR~giAWg~lGase~c 304 (432)
T KOG0138|consen 225 TDNKIRGFILEKGMRGLSAPKIEGKFSLRASATGMILMDGVEVPEENLLPGASSLQGPFGCLNNARYGIAWGALGASEFC 304 (432)
T ss_pred cCCceeeEEEecCCCCCcCCCcCCeeeeeecccCceeecCCcCChhhcCCCccccCCchhhhhhhhhheeehhchhHHHH
Confidence 66778889999999999999999999999999999999999999999998878877778899999999999999999999
Q ss_pred HHHHHHHHHhhhhhCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHHHHHHHHHH
Q 022503 160 YDMCYRYLMERKQFGAPLAAFQITQQKLAQMLGNIQAMNLVGWRLCRMCENGKMSLGQASLGKAWVSARARETVALGREL 239 (296)
Q Consensus 160 l~~~~~~~~~r~~~~~~~~~~~~~q~~l~~~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~~K~~a~~~a~~~~~~~~~~ 239 (296)
++.+..|..+|+|||+|++.+|.+|.++++|.+++...-.++++..+..|++......+++.|.+.+.-+.++++.+.++
T Consensus 305 ~~~arqY~ldRkQFG~PLAanQL~Q~Kladmltei~lgl~~clrl~rLkd~g~~tp~qiSl~Krn~~gKaleiAr~~Rdm 384 (432)
T KOG0138|consen 305 LHTARQYTLDRKQFGRPLAANQLIQKKLADMLTEITLGLQACLRLGRLKDQGKATPEQISLLKRNNCGKALEIARQARDM 384 (432)
T ss_pred HHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCChhhhHHHhhccchhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCCcCcChHHHHhhhcCCcccccchHHHHHHHHHHHHhcCcCCCC
Q 022503 240 LGGNGIVTDFLVGKAFCDFEPFHTGEGSYDINNLIAAREITGFASFKP 287 (296)
Q Consensus 240 ~G~~g~~~~~~l~r~~rd~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~ 287 (296)
.||-|+..++.+.|.+.++...-+++|+-+++..+++|.+.|+..|.|
T Consensus 385 LGgNGI~deyhv~rh~~nLE~vnTYEGThDihaLilGRaiTGia~F~~ 432 (432)
T KOG0138|consen 385 LGGNGISDEYHVIRHAMNLEAVNTYEGTHDIHALILGRAITGIAAFKP 432 (432)
T ss_pred hcCCcchhHHHHHHHHcCccceecccccchHHHHhhhhhhhhhhhcCC
Confidence 999999999999999999999999999999999999999999988765
No 22
>PRK13026 acyl-CoA dehydrogenase; Reviewed
Probab=100.00 E-value=8.6e-52 Score=392.68 Aligned_cols=268 Identities=25% Similarity=0.304 Sum_probs=243.4
Q ss_pred hhhhcCCHHHHHHHhHhhhccccceeEEecCCCCCCCcCCCeeEEE-----EECC---EEEEEeEEEeecCCCCCCEEEE
Q 022503 3 TIATSGSEAQKRKYLPSLAQLTTMASWALTEPNHGSDASALSTAAT-----KVEG---GWILEGQKRWIGNSTFADVLVV 74 (296)
Q Consensus 3 ~l~~~g~~~q~~~~l~~i~~g~~~~~~a~te~~~gs~~~~~~~~a~-----~~~~---g~~l~G~K~~vt~~~~a~~~lv 74 (296)
+|.+|||++||++|||++++|+.++|+++|||++|||...+.|+++ ++++ ||+|||+|.|||+++.||++++
T Consensus 170 lL~~~GTeEQK~~yLP~LAsGe~i~afAlTEP~aGSDaasi~Ttav~t~a~~dGd~~~gwvLNG~K~~IT~A~~Ad~~~v 249 (774)
T PRK13026 170 LLTHYGTQEQKDYWLPRLADGTEIPCFALTGPEAGSDAGAIPDTGIVCRGEFEGEEVLGLRLTWDKRYITLAPVATVLGL 249 (774)
T ss_pred HHHHhCCHHHHHhhhHHHhCCCeEEEEEecCCCCCCchhcccceeeeeeeeecCCccccEEEEEEEEeecCccccCEEEE
Confidence 5889999999999999999999999999999999999988886654 4666 6999999999999999999988
Q ss_pred EEEe-CC--------CCCeEEEEEeCCCCCeEEeecccccccccccccceEeeeeeeCCCCCCCC----CCChHHhhhhh
Q 022503 75 MARN-TT--------TKKINAFIVKKDAPGLTATKIENKIGLRMLQNGDILFKKVFVPDEDRLPG----FNSFQDTNIPL 141 (296)
Q Consensus 75 ~a~~-~~--------~~~~~~flv~~~~~Gv~~~~~~~~~g~~~~~~~~~~f~~v~Vp~~~~l~~----~~~~~~~~~~~ 141 (296)
.++. ++ +.++++|+||++.|||++.+.+.++|++.. ++++.||||+||.+++||. +.|+..+...+
T Consensus 250 ~ar~~dpd~~~g~~~~~GiT~fLVp~d~pGV~ig~~~~~lG~~~~-~g~v~fdDV~VP~d~lLG~~~~~G~G~~~l~~~L 328 (774)
T PRK13026 250 AFKLRDPDGLLGDKKELGITCALIPTDHPGVEIGRRHNPLGMAFM-NGTTRGKDVFIPLDWIIGGPDYAGRGWRMLVECL 328 (774)
T ss_pred EEEeeCccccccCCCCCceEEEEEECCCCCeEeeccccccccCcc-cceEEEeeeEccHHHhcCCcccCChHHHHHHHHH
Confidence 7763 22 247899999999999999999999999874 5899999999999999986 35788999999
Q ss_pred hHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhhhCcccccchhHHHHHHHHHH---HHHHHHHHHHHHHHHHHcCCCChhH
Q 022503 142 SVAR-VMVAWQTIGISIGVYDMCYRYLMERKQFGAPLAAFQITQQKLAQMLG---NIQAMNLVGWRLCRMCENGKMSLGQ 217 (296)
Q Consensus 142 ~~~r-~~~aa~~~G~~~~~l~~~~~~~~~r~~~~~~~~~~~~~q~~l~~~~~---~~~a~~~~~~~~~~~~d~~~~~~~~ 217 (296)
..+| +.+++.++|+++.+++.+.+|+++|++||+||+++|.+|+++++|.+ .++++|.+++.+. |.+.+....
T Consensus 329 ~~gR~i~laA~a~G~A~~al~~Av~YA~~R~QFG~pIg~fQ~Vq~~LAdma~~~y~lEaaR~l~~~a~---D~G~~~~~~ 405 (774)
T PRK13026 329 SAGRGISLPALGTASGHMATRTTGAYAYVRRQFGMPIGQFEGVQEALARIAGNTYLLEAARRLTTTGL---DLGVKPSVV 405 (774)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HCCCCchHH
Confidence 9999 89999999999999999999999999999999999999999999999 6889998888764 555555678
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCCcCc--ChHHHHhhhcCCcccccchHHHHHHH
Q 022503 218 ASLGKAWVSARARETVALGRELLGGNGIVTD--FLVGKAFCDFEPFHTGEGSYDINNLI 274 (296)
Q Consensus 218 ~~~~K~~a~~~a~~~~~~~~~~~G~~g~~~~--~~l~r~~rd~~~~~~~~g~~~~~~~~ 274 (296)
++++|+++++.+.++++.+||+|||.||+++ ++++|+|||++...+.+|++++++..
T Consensus 406 aA~AK~~atE~a~~va~~AmQIhGG~Gy~~e~~~~ler~yRdari~~i~eGtnei~R~l 464 (774)
T PRK13026 406 TAIAKYHMTELARDVVNDAMDIHAGKGIQLGPKNYLGHAYMAVPIAITVEGANILTRNL 464 (774)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhchheeeCCCCChHHHHHHHhhhhheeCcHHHHHHHH
Confidence 8999999999999999999999999999998 89999999999999999999998864
No 23
>cd01158 SCAD_SBCAD Short chain acyl-CoA dehydrogenases and eukaryotic short/branched chain acyl-CoA dehydrogenases. Short chain acyl-CoA dehydrogenase (SCAD). SCAD is a mitochondrial beta-oxidation enzyme. It catalyzes the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of SCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. This subgroup also contains the eukaryotic short/branched chain acyl-CoA dehydrogenase(SBCAD), the bacterial butyryl-CoA dehydorgenase(BCAD) and 2-methylbutyryl-CoA dehydrogenase, which is involved in isoleucine catabolism. These enzymes are homotetramers.
Probab=100.00 E-value=2.7e-51 Score=370.35 Aligned_cols=279 Identities=35% Similarity=0.547 Sum_probs=262.8
Q ss_pred hhhhcCCHHHHHHHhHhhhccccceeEEecCCCCCCCcCCCeeEEEEECCEEEEEeEEEeecCCCCCCEEEEEEEeCCC-
Q 022503 3 TIATSGSEAQKRKYLPSLAQLTTMASWALTEPNHGSDASALSTAATKVEGGWILEGQKRWIGNSTFADVLVVMARNTTT- 81 (296)
Q Consensus 3 ~l~~~g~~~q~~~~l~~i~~g~~~~~~a~te~~~gs~~~~~~~~a~~~~~g~~l~G~K~~vt~~~~a~~~lv~a~~~~~- 81 (296)
++..+|+++|+++|++++.+|+.++++++|||+.|++...+.+++++++|||+|||+|.|+|++..||+++|.++++++
T Consensus 91 ~l~~~~~~~~~~~~l~~~~~G~~~~~~a~se~~~gs~~~~~~~~a~~~~~g~~l~G~k~~vsg~~~ad~~lv~a~~~~~~ 170 (373)
T cd01158 91 PIIKFGTEEQKKKYLPPLATGEKIGAFALSEPGAGSDAAALKTTAKKDGDDYVLNGSKMWITNGGEADFYIVFAVTDPSK 170 (373)
T ss_pred HHHHhCCHHHHHHHHHHHhCCCeEEEEEecCCCCCCCHHHCEeEEEEeCCEEEEeeEEEEEcCCCcCCEEEEEEEcCCCC
Confidence 5678999999999999999999999999999999999888999999999999999999999999999999999987533
Q ss_pred --CCeEEEEEeCCCCCeEEeecccccccccccccceEeeeeeeCCCCCCCCC-CChHHhhhhhhHHHHHHHHHHHHHHHH
Q 022503 82 --KKINAFIVKKDAPGLTATKIENKIGLRMLQNGDILFKKVFVPDEDRLPGF-NSFQDTNIPLSVARVMVAWQTIGISIG 158 (296)
Q Consensus 82 --~~~~~flv~~~~~Gv~~~~~~~~~g~~~~~~~~~~f~~v~Vp~~~~l~~~-~~~~~~~~~~~~~r~~~aa~~~G~~~~ 158 (296)
.++++|+||.+.|||++.+.|+++|+++++++++.|+||+||++++++.+ .++......+...|+.+++.++|++++
T Consensus 171 ~~~~~~~~lvp~~~~gv~i~~~~~~~G~~g~~s~~v~~~~v~Vp~~~~lg~~~~g~~~~~~~~~~~r~~~~a~~lG~a~~ 250 (373)
T cd01158 171 GYRGITAFIVERDTPGLSVGKKEDKLGIRGSSTTELIFEDVRVPKENILGEEGEGFKIAMQTLDGGRIGIAAQALGIAQA 250 (373)
T ss_pred CCCceEEEEEcCCCCCeecCCcccccccCCCCceEEEeCcEEecHHHcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35789999999999999999999999999999999999999999999876 467777778888999999999999999
Q ss_pred HHHHHHHHHHhhhhhCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHHHHHHHHH
Q 022503 159 VYDMCYRYLMERKQFGAPLAAFQITQQKLAQMLGNIQAMNLVGWRLCRMCENGKMSLGQASLGKAWVSARARETVALGRE 238 (296)
Q Consensus 159 ~l~~~~~~~~~r~~~~~~~~~~~~~q~~l~~~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~~K~~a~~~a~~~~~~~~~ 238 (296)
+++.+++|+++|.+||+|+.++|.+|++++++...+++++++++++++.++.+.+....++++|+++++.+.++++.+++
T Consensus 251 ~l~~~~~~~~~R~~~g~~~~~~~~v~~~la~~~~~l~aa~~~~~~aa~~~~~~~~~~~~~~~~k~~~~~~a~~~~~~~~~ 330 (373)
T cd01158 251 ALDAAVDYAKERKQFGKPIADFQGIQFKLADMATEIEAARLLTYKAARLKDNGEPFIKEAAMAKLFASEVAMRVTTDAVQ 330 (373)
T ss_pred HHHHHHHHHHhCcccCCcHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999877656677899999999999999999999
Q ss_pred HhCCCCCcCcChHHHHhhhcCCcccccchHHHHHHHHHHHHhc
Q 022503 239 LLGGNGIVTDFLVGKAFCDFEPFHTGEGSYDINNLIAAREITG 281 (296)
Q Consensus 239 ~~G~~g~~~~~~l~r~~rd~~~~~~~~g~~~~~~~~~~~~~l~ 281 (296)
++|+.||+++++++|+|||++...+++|++++++..+++.+|+
T Consensus 331 ~~G~~g~~~~~~l~r~~rd~~~~~~~~g~~~~~~~~i~~~~~~ 373 (373)
T cd01158 331 IFGGYGYTKDYPVERYYRDAKITEIYEGTSEIQRLVIAKHLLK 373 (373)
T ss_pred hhcCccCCCCChHHHHHHHhhhccccCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999875
No 24
>PTZ00460 acyl-CoA dehydrogenase; Provisional
Probab=100.00 E-value=1.9e-51 Score=388.40 Aligned_cols=281 Identities=23% Similarity=0.292 Sum_probs=256.1
Q ss_pred hhhhhcCCHHHHHHHhHhhhccccceeEEecCCCCCCCcCCCeeEEEEE--CCEEEEE-----eEEEeecC-CCCCCEEE
Q 022503 2 LTIATSGSEAQKRKYLPSLAQLTTMASWALTEPNHGSDASALSTAATKV--EGGWILE-----GQKRWIGN-STFADVLV 73 (296)
Q Consensus 2 ~~l~~~g~~~q~~~~l~~i~~g~~~~~~a~te~~~gs~~~~~~~~a~~~--~~g~~l~-----G~K~~vt~-~~~a~~~l 73 (296)
.+|..+||++||++|||.+.+|+.++|+++|||++|||+..++|+|+++ +|+|+|| |.|+|+++ +..||+++
T Consensus 104 ~~I~~~GT~eQk~~~Lp~~~~ge~ig~~A~TEpghGSdv~~leTtAt~d~~~defvLntPt~~g~K~wi~~~g~~A~~~v 183 (646)
T PTZ00460 104 PAFQVLGTDEQINLWMPSLLNFEIVGCYAQTELGHGSDVQNLETTATYDKQTNEFVIHTPSVEAVKFWPGELGFLCNFAL 183 (646)
T ss_pred HHHHHhCCHHHHHHHHHHHhCCChheeeeecCCCccCCcccceEEEEEcCCCCEEEECCCCCCeEEEccCCCCCCCCEEE
Confidence 3677899999999999999999999999999999999999999999996 5789998 99999998 68999999
Q ss_pred EEEEeCC---CCCeEEEEEeC-------CCCCeEEeecccccccccccccceEeeeeeeCCCCCCCC-------CC----
Q 022503 74 VMARNTT---TKKINAFIVKK-------DAPGLTATKIENKIGLRMLQNGDILFKKVFVPDEDRLPG-------FN---- 132 (296)
Q Consensus 74 v~a~~~~---~~~~~~flv~~-------~~~Gv~~~~~~~~~g~~~~~~~~~~f~~v~Vp~~~~l~~-------~~---- 132 (296)
|+|++.. +.|+++|+||. ..|||++.+..+++|+++.+++.+.||||+||++++||. +.
T Consensus 184 V~Arl~~~~~~~Gi~~FlV~ird~~~~~~~pGV~vg~~~~k~G~~~~dng~l~Fd~VrVP~~nlLg~~~~v~~~G~~~~~ 263 (646)
T PTZ00460 184 VYAKLIVNGKNKGVHPFMVRIRDKETHKPLQGVEVGDIGPKMGYAVKDNGFLSFDHYRIPLDSLLARYIKVSEDGQVERQ 263 (646)
T ss_pred EEEEECcCCCCCceEEEEEeccccCCCCCCCCeEEeccccccCcCCCCceEEEeceEEECHHHhCCcccccCCCCccccC
Confidence 9999852 25899999993 259999999999999999999999999999999999985 21
Q ss_pred C-hHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhCc------ccccchhHHHHHHHHHHHHHHHHHHHHHHH
Q 022503 133 S-FQDTNIPLSVARVMVAWQTIGISIGVYDMCYRYLMERKQFGA------PLAAFQITQQKLAQMLGNIQAMNLVGWRLC 205 (296)
Q Consensus 133 ~-~~~~~~~~~~~r~~~aa~~~G~~~~~l~~~~~~~~~r~~~~~------~~~~~~~~q~~l~~~~~~~~a~~~~~~~~~ 205 (296)
+ ++.....+...|+.+++.++|+++.+++.+++|++.|++||+ ||.+||.+|++|+++.+++++++.+++++.
T Consensus 264 g~~~~~~~~l~~~R~~iaa~~~g~a~~Al~iAvrYa~~R~QFg~~~~~E~pI~~yQ~~Q~rLa~~la~~~A~r~~~~~a~ 343 (646)
T PTZ00460 264 GNPKVSYASMMYMRNLIIDQYPRFAAQALTVAIRYSIYRQQFTNDNKQENSVLEYQTQQQKLLPLLAEFYACIFGGLKIK 343 (646)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCCcHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 566677788899999999999999999999999999999997 999999999999999999999999999999
Q ss_pred HHHHcC------CC------ChhHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcCcChHHHHhhhcCCcccccchHHHHHH
Q 022503 206 RMCENG------KM------SLGQASLGKAWVSARARETVALGRELLGGNGIVTDFLVGKAFCDFEPFHTGEGSYDINNL 273 (296)
Q Consensus 206 ~~~d~~------~~------~~~~~~~~K~~a~~~a~~~~~~~~~~~G~~g~~~~~~l~r~~rd~~~~~~~~g~~~~~~~ 273 (296)
+.++.. .+ ....++++|.++++.+.++++.|+|+|||+||+.++++++++||++...+++|++++++.
T Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~as~aK~~~t~~a~~~~~~~~q~~GG~Gy~~~~~l~~~~rda~~~~t~eG~n~vl~~ 423 (646)
T PTZ00460 344 ELVDDNFNRVQKNDFSLLQLTHAILSAAKANYTYFVSNCAEWCRLSCGGHGYAHYSGLPAIYFDMSPNITLEGENQIMYL 423 (646)
T ss_pred HHHHHhhhhhccCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccccCcHHHHHHHhccceeecCcHHHHHH
Confidence 887742 12 245689999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcC
Q 022503 274 IAAREITGF 282 (296)
Q Consensus 274 ~~~~~~l~~ 282 (296)
++++.+++.
T Consensus 424 ~iar~ll~~ 432 (646)
T PTZ00460 424 QLARYLLKQ 432 (646)
T ss_pred HHHHHHHHH
Confidence 999988754
No 25
>cd00567 ACAD Acyl-CoA dehydrogenase. Both mitochondrial acyl-CoA dehydrogenases (ACAD) and peroxisomal acyl-CoA oxidases (AXO) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. In contrast, AXO catalyzes a different oxidative half-reaction, in which the reduced FAD is reoxidized by molecular oxygen. The ACAD family includes the eukaryotic beta-oxidation enzymes, short (SCAD), medium (MCAD), long (LCAD) and very-long (VLCAD) chain acyl-CoA dehydrogenases. These enzymes all share high sequence similarity, but differ in their substrate specificities. The ACAD family also includes amino acid catabolism enzymes such as Isovaleryl-CoA dehydrogenase (IVD), short/branched chain acyl-CoA dehydrogenases(SBCAD), Isob
Probab=100.00 E-value=5.2e-51 Score=362.16 Aligned_cols=276 Identities=34% Similarity=0.551 Sum_probs=259.6
Q ss_pred hhhhhcCCHHHHHHHhHhhhccccceeEEecCCCCCCCcCCCeeEEEEECCEEEEEeEEEeecCCCCCCEEEEEEEeCCC
Q 022503 2 LTIATSGSEAQKRKYLPSLAQLTTMASWALTEPNHGSDASALSTAATKVEGGWILEGQKRWIGNSTFADVLVVMARNTTT 81 (296)
Q Consensus 2 ~~l~~~g~~~q~~~~l~~i~~g~~~~~~a~te~~~gs~~~~~~~~a~~~~~g~~l~G~K~~vt~~~~a~~~lv~a~~~~~ 81 (296)
.+|..+|+++||++||+.+.+|+.++++++|||+.|++...+.+++++++|||+|||.|.|+|++..+|+++|+++++++
T Consensus 46 ~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~sE~~~gs~~~~~~~~a~~~~~g~~l~G~k~~~s~~~~ad~~lv~a~~~~~ 125 (327)
T cd00567 46 ALLLAYGTEEQKERYLPPLASGEAIAAFALTEPGAGSDLAGIRTTARKDGDGYVLNGRKIFISNGGDADLFIVLARTDEE 125 (327)
T ss_pred HHHHHhCCHHHHHHHHHHHhCCCceEEEEecCCCCCCchhhCEeEEEEeCCEEEEEEEEEEecCCccCCEEEEEEEeCCC
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999997542
Q ss_pred ----CCeEEEEEeCCCCCeEEeecccccccccccccceEeeeeeeCCCCCCCCC-CChHHhhhhhhHHHHHHHHHHHHHH
Q 022503 82 ----KKINAFIVKKDAPGLTATKIENKIGLRMLQNGDILFKKVFVPDEDRLPGF-NSFQDTNIPLSVARVMVAWQTIGIS 156 (296)
Q Consensus 82 ----~~~~~flv~~~~~Gv~~~~~~~~~g~~~~~~~~~~f~~v~Vp~~~~l~~~-~~~~~~~~~~~~~r~~~aa~~~G~~ 156 (296)
++..+|+||.+.|||++.+.|.++|+++++++.+.|+||+||++++++.+ .++......+..+++.++++++|++
T Consensus 126 ~~~~~~~~~~lvp~~~~Gv~~~~~~~~~G~~~~~~~~v~~~~v~Vp~~~~l~~~~~g~~~~~~~~~~~~~~~aa~~~G~a 205 (327)
T cd00567 126 GPGHRGISAFLVPADTPGVTVGRIWDKMGMRGSGTGELVFDDVRVPEDNLLGEEGGGFELAMKGLNVGRLLLAAVALGAA 205 (327)
T ss_pred CCCCCceEEEEEeCCCCCeEeccccccccCCCCceEEEEECCEEecHHHcCCCCCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46889999999999999999999999999999999999999999999876 4566777889999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-ChhHHHHHHHHHHHHHHHHHHH
Q 022503 157 IGVYDMCYRYLMERKQFGAPLAAFQITQQKLAQMLGNIQAMNLVGWRLCRMCENGKM-SLGQASLGKAWVSARARETVAL 235 (296)
Q Consensus 157 ~~~l~~~~~~~~~r~~~~~~~~~~~~~q~~l~~~~~~~~a~~~~~~~~~~~~d~~~~-~~~~~~~~K~~a~~~a~~~~~~ 235 (296)
+++++.+++|+++|.+||+|+.++|.+|++++++...+++++++++.+++.++.... ....++++|+++++.+.++++.
T Consensus 206 ~~al~~~~~~~~~r~~~g~~~~~~~~vq~~la~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~k~~~~~~a~~~~~~ 285 (327)
T cd00567 206 RAALDEAVEYAKQRKQFGKPLAEFQAVQFKLADMAAELEAARLLLYRAAWLLDQGPDEARLEAAMAKLFATEAAREVADL 285 (327)
T ss_pred HHHHHHHHHHHHhccccCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999988654 5567889999999999999999
Q ss_pred HHHHhCCCCCcCcChHHHHhhhcCCcccccchHHHHHHHHHH
Q 022503 236 GRELLGGNGIVTDFLVGKAFCDFEPFHTGEGSYDINNLIAAR 277 (296)
Q Consensus 236 ~~~~~G~~g~~~~~~l~r~~rd~~~~~~~~g~~~~~~~~~~~ 277 (296)
+++++||.||.++++++|+|||++...+.+|++++++..+++
T Consensus 286 ~~~~~Gg~g~~~~~~l~r~~rd~~~~~~~~G~~~~~~~~~~~ 327 (327)
T cd00567 286 AMQIHGGRGYSREYPVERYLRDARAARIAEGTAEIQRLIIAR 327 (327)
T ss_pred HHHHccCccccCCCHHHHHHHhhhcceeecCHHHHHHHHhcC
Confidence 999999999999999999999999999999999999877753
No 26
>PLN02312 acyl-CoA oxidase
Probab=100.00 E-value=2.2e-51 Score=389.50 Aligned_cols=280 Identities=25% Similarity=0.356 Sum_probs=255.8
Q ss_pred hhhhhcCCHHHHHHHhHhhhccccceeEEecCCCCCCCcCCCeeEEEEE--CCEEEEE-----eEEEeecCC-CCCCEEE
Q 022503 2 LTIATSGSEAQKRKYLPSLAQLTTMASWALTEPNHGSDASALSTAATKV--EGGWILE-----GQKRWIGNS-TFADVLV 73 (296)
Q Consensus 2 ~~l~~~g~~~q~~~~l~~i~~g~~~~~~a~te~~~gs~~~~~~~~a~~~--~~g~~l~-----G~K~~vt~~-~~a~~~l 73 (296)
.+|..+||++||++|||++.+|+.++||++|||++|||...++|+|+++ +|+|+|| |.|+|++|+ ..|++++
T Consensus 162 ~~I~~~GTeeqk~~~L~~~~~ge~ig~fA~TEpghGSdv~~leTtAt~D~~~defVLNtPt~~g~K~wig~a~~~A~~~v 241 (680)
T PLN02312 162 GAIKFLGTKRHHDKWLKDTEDYVVKGCFAMTELGHGSNVRGIETVTTYDPKTEEFVINTPCESAQKYWIGGAANHATHTI 241 (680)
T ss_pred HHHHHhCCHHHHHHHHHHHhCCCeeeEeeecCCCcCcchhcCeEEEEEeCCCCEEEECCCCCCeEEECccCCcccCCEEE
Confidence 3677899999999999999999999999999999999999999999998 4789999 799999998 7999999
Q ss_pred EEEEeCC---CCCeEEEEEe---CC---CCCeEEeecccccccccccccceEeeeeeeCCCCCCCC--------------
Q 022503 74 VMARNTT---TKKINAFIVK---KD---APGLTATKIENKIGLRMLQNGDILFKKVFVPDEDRLPG-------------- 130 (296)
Q Consensus 74 v~a~~~~---~~~~~~flv~---~~---~~Gv~~~~~~~~~g~~~~~~~~~~f~~v~Vp~~~~l~~-------------- 130 (296)
|+|++.. +.|+++|+|| .+ .|||++.+..+++|+++.+++.+.||||+||++++|+.
T Consensus 242 V~Arl~~~~~~~Gv~~FlV~ird~~~~~~PGV~ig~~~~K~G~~g~dng~l~FdnVrVP~~nlLg~~~~V~~~G~y~~~~ 321 (680)
T PLN02312 242 VFSQLHINGKNEGVHAFIAQIRDQDGNICPNIRIADCGHKIGLNGVDNGRIWFDNLRIPRENLLNSVADVSPDGKYVSAI 321 (680)
T ss_pred EEEEECCCCCCCCeEEEEEeecCCCCCCCCCEEeccCCCcccccCCCceEEEEccEEECHHHhCCccceeCCCCceecCC
Confidence 9999853 2579999998 23 89999999999999999999999999999999999974
Q ss_pred ---CCChHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhCc----c---cccchhHHHHHHHHHHHHHHHHHH
Q 022503 131 ---FNSFQDTNIPLSVARVMVAWQTIGISIGVYDMCYRYLMERKQFGA----P---LAAFQITQQKLAQMLGNIQAMNLV 200 (296)
Q Consensus 131 ---~~~~~~~~~~~~~~r~~~aa~~~G~~~~~l~~~~~~~~~r~~~~~----~---~~~~~~~q~~l~~~~~~~~a~~~~ 200 (296)
..++......+..+|+.+++.++|+++++++.+++|++.|+|||+ | |.++|.+|++|+++.+++++++..
T Consensus 322 ~~~~~gf~~~~~~l~~~R~~iaa~a~g~a~~Al~iAvrYa~~R~QFg~~~~~~E~~I~dyq~~Q~rLa~~la~~~a~~~~ 401 (680)
T PLN02312 322 KDPDQRFGAFLAPLTSGRVTIAVSAIYSSKVGLAIAIRYSLSRRAFSVTPNGPEVLLLDYPSHQRRLLPLLAKTYAMSFA 401 (680)
T ss_pred CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCeecCCCCCCccchHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 245667778899999999999999999999999999999999995 4 999999999999999999998888
Q ss_pred HHHHHHHHHcCC-----CChhHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcCcChHHHHhhhcCCcccccchHHHHHHHH
Q 022503 201 GWRLCRMCENGK-----MSLGQASLGKAWVSARARETVALGRELLGGNGIVTDFLVGKAFCDFEPFHTGEGSYDINNLIA 275 (296)
Q Consensus 201 ~~~~~~~~d~~~-----~~~~~~~~~K~~a~~~a~~~~~~~~~~~G~~g~~~~~~l~r~~rd~~~~~~~~g~~~~~~~~~ 275 (296)
...+.+.++.+. +....++++|.++++.+.++++.|+|+|||+||+.++++++++||++...+++|++++++.++
T Consensus 402 a~~l~~~~~~~~~~~~~~~~~~as~aKa~~t~~a~~~~~~~rq~~GG~Gy~~~~~l~~l~rd~~~~~t~EG~n~Vl~~~i 481 (680)
T PLN02312 402 ANDLKMIYVKRTPESNKAIHVVSSGFKAVLTWHNMRTLQECREACGGQGLKTENRVGQLKAEYDVQSTFEGDNNVLMQQV 481 (680)
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccCcHHHHHHhhhhheeecCcHHHHHHHH
Confidence 877777665532 345688999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhc
Q 022503 276 AREITG 281 (296)
Q Consensus 276 ~~~~l~ 281 (296)
++.+++
T Consensus 482 Ar~ll~ 487 (680)
T PLN02312 482 SKALLA 487 (680)
T ss_pred HHHHHH
Confidence 998865
No 27
>cd01154 AidB Proteins involved in DNA damage response, similar to the AidB gene product. AidB is one of several genes involved in the SOS adaptive response to DNA alkylation damage, whose expression is activated by the Ada protein. Its function has not been entirely elucidated; however, it is similar in sequence and function to acyl-CoA dehydrogenases. It has been proposed that aidB directly destroys DNA alkylating agents such as nitrosoguanidines (nitrosated amides) or their reaction intermediates.
Probab=100.00 E-value=4.8e-51 Score=372.62 Aligned_cols=274 Identities=23% Similarity=0.357 Sum_probs=252.6
Q ss_pred hhhhhcCCHHHHHHHhHhhhccc----cceeEEecCCCCCCCcCCCeeEEEEE-CCEEEEEeEEEeecCCCCCCEEEEEE
Q 022503 2 LTIATSGSEAQKRKYLPSLAQLT----TMASWALTEPNHGSDASALSTAATKV-EGGWILEGQKRWIGNSTFADVLVVMA 76 (296)
Q Consensus 2 ~~l~~~g~~~q~~~~l~~i~~g~----~~~~~a~te~~~gs~~~~~~~~a~~~-~~g~~l~G~K~~vt~~~~a~~~lv~a 76 (296)
.+|..||+++| ++|||++.+|+ +++++++|||+.|||...+.|+|+++ +|+|+|||.|+|+|++ .||+++|+|
T Consensus 121 ~~l~~~g~~~~-~~~l~~l~~g~~~~~~~~~~~~TEp~~GSD~~~~~T~A~~~~g~~~~LnG~K~f~s~a-~Ad~~lv~A 198 (418)
T cd01154 121 YALRKYGPEEL-KQYLPGLLSDRYKTGLLGGTWMTEKQGGSDLGANETTAERSGGGVYRLNGHKWFASAP-LADAALVLA 198 (418)
T ss_pred HHHHHhCcHHH-HHHHHHHhCCCcccchhheeeecCCCcccchhhCeEEEEECCCCcEEEEEEEEEecCc-ccCEEEEEE
Confidence 56889999886 56999999997 89999999999999999999999999 8999999999999999 999999999
Q ss_pred EeCCC----CCeEEEEEeCCCC-----CeEEeecccccccccccccceEeeeeeeCCCCCCCCC-CChHHhhhhhhHHHH
Q 022503 77 RNTTT----KKINAFIVKKDAP-----GLTATKIENKIGLRMLQNGDILFKKVFVPDEDRLPGF-NSFQDTNIPLSVARV 146 (296)
Q Consensus 77 ~~~~~----~~~~~flv~~~~~-----Gv~~~~~~~~~g~~~~~~~~~~f~~v~Vp~~~~l~~~-~~~~~~~~~~~~~r~ 146 (296)
+++++ +++++|+||++.| ||++.+.|+++|+++++++++.|+|| .++++|.+ .|+......+...|+
T Consensus 199 rt~~~~~~~~gls~flVp~~~~~~~~~Gv~i~~~~~~~G~r~~~~~ev~f~dv---~~~~lG~~g~G~~~~~~~l~~~R~ 275 (418)
T cd01154 199 RPEGAPAGARGLSLFLVPRLLEDGTRNGYRIRRLKDKLGTRSVATGEVEFDDA---EAYLIGDEGKGIYYILEMLNISRL 275 (418)
T ss_pred ECCCCCCCCCcEEEEEEeccCCCCCCCCeEecccccccCCCCCCeEEEEecCc---CccccCCCCccHHHHHHHHHHHHH
Confidence 98632 5799999999875 99999999999999999999999998 37889876 678888889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC--------hhHH
Q 022503 147 MVAWQTIGISIGVYDMCYRYLMERKQFGAPLAAFQITQQKLAQMLGNIQAMNLVGWRLCRMCENGKMS--------LGQA 218 (296)
Q Consensus 147 ~~aa~~~G~~~~~l~~~~~~~~~r~~~~~~~~~~~~~q~~l~~~~~~~~a~~~~~~~~~~~~d~~~~~--------~~~~ 218 (296)
.+++.++|+++++++.+++|+++|.+||+|+.++|.+|++|+++.+++++++++++++++.++..... ...+
T Consensus 276 ~~aa~~~G~a~~al~~a~~ya~~R~~fg~~l~~~~~v~~~La~~~~~~eaar~l~~~aa~~~~~~~~~~~~~~~~~r~~~ 355 (418)
T cd01154 276 DNAVAALGIMRRALSEAYHYARHRRAFGKPLIDHPLMRRDLAEMEVDVEAATALTFRAARAFDRAAADKPVEAHMARLAT 355 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCChhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999988863211 1256
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCcCcChHHHHhhhcCCcccccchHHHHHHHHHHHHh
Q 022503 219 SLGKAWVSARARETVALGRELLGGNGIVTDFLVGKAFCDFEPFHTGEGSYDINNLIAAREIT 280 (296)
Q Consensus 219 ~~~K~~a~~~a~~~~~~~~~~~G~~g~~~~~~l~r~~rd~~~~~~~~g~~~~~~~~~~~~~l 280 (296)
+++|+++++.+.++++.+++++||.||+++++++|+|||++...+++|++++++..+.|.+-
T Consensus 356 ~~aK~~~~e~a~~v~~~a~~i~Gg~G~~~~~~l~r~~RDa~~~~i~~Gt~~i~~~~~~r~~~ 417 (418)
T cd01154 356 PVAKLIACKRAAPVTSEAMEVFGGNGYLEEWPVARLHREAQVTPIWEGTGNIQALDVLRVLV 417 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcEEcCCChHHHHHhcCcCcceeccHHHHHHHHHHHHhc
Confidence 78999999999999999999999999999999999999999999999999999999998763
No 28
>PRK11561 isovaleryl CoA dehydrogenase; Provisional
Probab=100.00 E-value=4.6e-51 Score=377.07 Aligned_cols=275 Identities=20% Similarity=0.227 Sum_probs=253.9
Q ss_pred hhhhcCCHHHHHHHhHhhhccc-------------cceeEEecCCCCCCCcCCCeeEEEE-ECCEEEEEeEEEeecCCCC
Q 022503 3 TIATSGSEAQKRKYLPSLAQLT-------------TMASWALTEPNHGSDASALSTAATK-VEGGWILEGQKRWIGNSTF 68 (296)
Q Consensus 3 ~l~~~g~~~q~~~~l~~i~~g~-------------~~~~~a~te~~~gs~~~~~~~~a~~-~~~g~~l~G~K~~vt~~~~ 68 (296)
++..+|+++||++|||++.+|+ ++.++++|||+.|||...+.|+|++ ++|+|+|||.|+|+| ++.
T Consensus 143 ~~l~~~~~e~~~~~lp~l~sg~~~~~~~~~~~~~~~~~~~a~TEp~~GSDv~~~~T~A~~~~gg~w~LnG~K~fiS-a~~ 221 (538)
T PRK11561 143 PLLLQMLPAPFQDWLTPLLSDRYDSHLLPGGQKRGLLIGMGMTEKQGGSDVLSNTTRAERLADGSYRLVGHKWFFS-VPQ 221 (538)
T ss_pred HHHHhcCHHHHHHHHHHHhCCCcccccccchhhhhheeEEEecCCCCCCchhhCeeEEEECCCCeEEEEEEEEEEE-chh
Confidence 4567899999999999999987 4569999999999999999999999 467899999999999 688
Q ss_pred CCEEEEEEEeCCCCCeEEEEEeCCCC-----CeEEeecccccccccccccceEeeeeeeCCCCCCCCC-CChHHhhhhhh
Q 022503 69 ADVLVVMARNTTTKKINAFIVKKDAP-----GLTATKIENKIGLRMLQNGDILFKKVFVPDEDRLPGF-NSFQDTNIPLS 142 (296)
Q Consensus 69 a~~~lv~a~~~~~~~~~~flv~~~~~-----Gv~~~~~~~~~g~~~~~~~~~~f~~v~Vp~~~~l~~~-~~~~~~~~~~~ 142 (296)
||+++|+|+++ +++++|+||++.| ||++...++++|+++++++++.|+|| .+++||.+ .|+..+...+.
T Consensus 222 AD~~lVlArt~--~Gls~FlVp~~~p~g~~nGv~i~rl~~klG~r~~~t~ev~f~dv---~~~llG~~g~G~~~i~~~l~ 296 (538)
T PRK11561 222 SDAHLVLAQAK--GGLSCFFVPRFLPDGQRNAIRLERLKDKLGNRSNASSEVEFQDA---IGWLLGEEGEGIRLILKMGG 296 (538)
T ss_pred hCEEEEEEEEC--CceEEEEEECCCCCCCCCceEEecccccccCCCCceeEEEECCH---HHHHCCCCCchHHHHHHHHH
Confidence 99999999986 6899999999988 79999999999999999999999999 37899876 68888888999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCh------h
Q 022503 143 VARVMVAWQTIGISIGVYDMCYRYLMERKQFGAPLAAFQITQQKLAQMLGNIQAMNLVGWRLCRMCENGKMSL------G 216 (296)
Q Consensus 143 ~~r~~~aa~~~G~~~~~l~~~~~~~~~r~~~~~~~~~~~~~q~~l~~~~~~~~a~~~~~~~~~~~~d~~~~~~------~ 216 (296)
..|+..++.++|+++++++.+++|+++|++||+||+++|.+|+.|++|.+++++++++++++++.+|.+.+.. .
T Consensus 297 ~~Rl~~a~~a~G~a~~Al~~A~~yA~~R~~FG~~L~~~q~vq~~LAdm~~~ieaar~l~~~aa~~~d~~~~~~~~~~~rl 376 (538)
T PRK11561 297 MTRFDCALGSHGLMRRAFSVAIYHAHQRQVFGKPLIEQPLMRQVLSRMALQLEGQTALLFRLARAWDRRADAKEALWARL 376 (538)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCccCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999764221 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCCcCcChHHHHhhhcCCcccccchHHHHHHHHHHHHhcCc
Q 022503 217 QASLGKAWVSARARETVALGRELLGGNGIVTDFLVGKAFCDFEPFHTGEGSYDINNLIAAREITGFA 283 (296)
Q Consensus 217 ~~~~~K~~a~~~a~~~~~~~~~~~G~~g~~~~~~l~r~~rd~~~~~~~~g~~~~~~~~~~~~~l~~~ 283 (296)
.++++|+++++.+.++++.++|++||.||+++++++|+|||++...+++|++++++..++|.+.+.|
T Consensus 377 ~t~~aK~~~~e~a~~v~~~Amqv~GG~Gy~ee~~lerl~RDa~v~~I~eGt~~i~~ldv~r~l~~~~ 443 (538)
T PRK11561 377 FTPAAKFVICKRGIPFVAEAMEVLGGIGYCEESELPRLYREMPVNSIWEGSGNIMCLDVLRVLNKQP 443 (538)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCccCCCCcHHHHHHHHHhhhhcccCCHHHHHHHHHHHHhcCh
Confidence 4568999999999999999999999999999999999999999999999999999999999998753
No 29
>PLN02876 acyl-CoA dehydrogenase
Probab=100.00 E-value=2.9e-50 Score=394.12 Aligned_cols=281 Identities=18% Similarity=0.272 Sum_probs=260.4
Q ss_pred hhhhhcCCHHHHHHHhHhhhccccceeEEecCCC-CCCCcCCCeeEEEEECCEEEEEeEEEeecCC--CCCCEEEEEEEe
Q 022503 2 LTIATSGSEAQKRKYLPSLAQLTTMASWALTEPN-HGSDASALSTAATKVEGGWILEGQKRWIGNS--TFADVLVVMARN 78 (296)
Q Consensus 2 ~~l~~~g~~~q~~~~l~~i~~g~~~~~~a~te~~-~gs~~~~~~~~a~~~~~g~~l~G~K~~vt~~--~~a~~~lv~a~~ 78 (296)
.+|..+|+++||++||+++++|+.++++++|||+ +|||...+.|++++++|||+|||+|.|+|++ +.+|+++|++++
T Consensus 527 ~~l~~~gt~eqk~~~L~~l~~G~~~~~~a~tEp~~~gsd~~~~~t~a~~~g~g~vLnG~K~~vtga~~~~ad~~lv~ar~ 606 (822)
T PLN02876 527 EVLLRYGNKEQQLEWLIPLLEGKIRSGFAMTEPQVASSDATNIECSIRRQGDSYVINGTKWWTSGAMDPRCRVLIVMGKT 606 (822)
T ss_pred HHHHHhCCHHHHHHHHHHHhCCCceeEEEecCCCccCcccccceEEEEEcCCEEEEEeEEEEecCCCCCCCCEEEEEEec
Confidence 3578899999999999999999999999999997 6899999999999999999999999999999 579999999997
Q ss_pred CCC----CCeEEEEEeCCCCCeEEeecccccccccc--cccceEeeeeeeCCCCCCCCC-CChHHhhhhhhHHHHHHHHH
Q 022503 79 TTT----KKINAFIVKKDAPGLTATKIENKIGLRML--QNGDILFKKVFVPDEDRLPGF-NSFQDTNIPLSVARVMVAWQ 151 (296)
Q Consensus 79 ~~~----~~~~~flv~~~~~Gv~~~~~~~~~g~~~~--~~~~~~f~~v~Vp~~~~l~~~-~~~~~~~~~~~~~r~~~aa~ 151 (296)
+++ ++.++|+||.+.|||++.+.|.++|++++ +++++.|+||+||++++++.. .++......+...|+..++.
T Consensus 607 ~~~~~~~~~~s~flV~~~~pGv~i~~~~~~~G~r~~~~~~~~v~fd~V~Vp~~~~lg~~g~g~~~~~~~l~~~r~~~aa~ 686 (822)
T PLN02876 607 DFNAPKHKQQSMILVDIQTPGVQIKRPLLVFGFDDAPHGHAEISFENVRVPAKNILLGEGRGFEIAQGRLGPGRLHHCMR 686 (822)
T ss_pred CCCCCCCCcceEEEEeCCCCCceeecccceeccCCCCCCeeEEEEcceeechhheecCCCchHHHHHHHHhhhHHHHHHH
Confidence 532 46889999999999999999999999984 578999999999999999755 57777888888999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--CChhHHHHHHHHHHHHH
Q 022503 152 TIGISIGVYDMCYRYLMERKQFGAPLAAFQITQQKLAQMLGNIQAMNLVGWRLCRMCENGK--MSLGQASLGKAWVSARA 229 (296)
Q Consensus 152 ~~G~~~~~l~~~~~~~~~r~~~~~~~~~~~~~q~~l~~~~~~~~a~~~~~~~~~~~~d~~~--~~~~~~~~~K~~a~~~a 229 (296)
++|+++++++.+++|+++|++||+|++++|.+|+++++|.++++++|++++++++.+|... +....++++|+++++.+
T Consensus 687 ~vG~a~~ale~a~~ya~~R~~fg~~i~~~q~vq~~la~~~~~leaar~l~~~aa~~~d~~~~~~~~~~~a~aK~~a~e~a 766 (822)
T PLN02876 687 LIGAAERGMQLMVQRALSRKAFGKLIAQHGSFLSDLAKCRVELEQTRLLVLEAADQLDRLGNKKARGIIAMAKVAAPNMA 766 (822)
T ss_pred HHHHHHHHHHHHHHHHHhhhhcCCchhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchhHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999998732 24467899999999999
Q ss_pred HHHHHHHHHHhCCCCCcCcChHHHHhhhcCCcccccchHHHHHHHHHHHHhcC
Q 022503 230 RETVALGRELLGGNGIVTDFLVGKAFCDFEPFHTGEGSYDINNLIAAREITGF 282 (296)
Q Consensus 230 ~~~~~~~~~~~G~~g~~~~~~l~r~~rd~~~~~~~~g~~~~~~~~~~~~~l~~ 282 (296)
.++++.++|++||.||+++++++|+|||++...+++|++++++..+++.+++.
T Consensus 767 ~~va~~a~qv~Gg~G~~~e~~l~r~~Rdar~~~i~~Gt~e~~~~~ia~~~~~~ 819 (822)
T PLN02876 767 LKVLDMAMQVHGAAGVSSDTVLAHLWATARTLRIADGPDEVHLGTIAKLELQR 819 (822)
T ss_pred HHHHHHHHHhcCCCccCCcchHHHHHHhhhhcccccChHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999875
No 30
>TIGR03204 pimC_large pimeloyl-CoA dehydrogenase, large subunit. Members of this protein family are the PimC proteins of species such as Rhodopseudomonas palustris and Bradyrhizobium japonicum. The pimFABCDE operon encodes proteins for the metabolism of straight chain dicarboxylates of seven to fourteen carbons. Especially relevant is pimeloyl-CoA, basis of the gene symbol, as it is a catabolite of benzoyl-CoA degradation, which occurs in Rhodopseudomonas palustris.
Probab=100.00 E-value=1.4e-49 Score=360.80 Aligned_cols=275 Identities=24% Similarity=0.323 Sum_probs=246.6
Q ss_pred hhhhcCCHHHHHHHhHhhhccccceeEEecCCCCCCCcCCCeeEEEEECCEEEEEeEEEeecCCCCCCEEEEEEEeCC--
Q 022503 3 TIATSGSEAQKRKYLPSLAQLTTMASWALTEPNHGSDASALSTAATKVEGGWILEGQKRWIGNSTFADVLVVMARNTT-- 80 (296)
Q Consensus 3 ~l~~~g~~~q~~~~l~~i~~g~~~~~~a~te~~~gs~~~~~~~~a~~~~~g~~l~G~K~~vt~~~~a~~~lv~a~~~~-- 80 (296)
+|..+|+++||++|||.+++|+.++++++|||+.|||...+.|++++++++|+|||+|.|||++..||+++|++++++
T Consensus 99 ~l~~~g~~~q~~~~L~~i~~G~~~~~~a~tEp~~gsd~~~~~t~a~~~g~~~~LnG~K~~vt~a~~Ad~~lv~a~~~~~~ 178 (395)
T TIGR03204 99 VIYTFGNEEQKKRFLPRIANVDDWWCQGFSEPGSGSDLASLKTKAEKKGDKWIINGQKTWTTLAQHADWIFCLCRTDPTA 178 (395)
T ss_pred HHHHhCCHHHHHHHHHHHhCCchheEeEecCCCCCCChhhceEEEEEcCCEEEEeeEEEeecCCccCCeEEEEEEeCCCC
Confidence 467889999999999999999999999999999999999999999999999999999999999999999999999753
Q ss_pred --CCCeEEEEEeCCCCCeEEeecccccccccccccceEeeeeeeCCCCCCCCC-CChHHhhhhhhHHHHHHHHHHHHHHH
Q 022503 81 --TKKINAFIVKKDAPGLTATKIENKIGLRMLQNGDILFKKVFVPDEDRLPGF-NSFQDTNIPLSVARVMVAWQTIGISI 157 (296)
Q Consensus 81 --~~~~~~flv~~~~~Gv~~~~~~~~~g~~~~~~~~~~f~~v~Vp~~~~l~~~-~~~~~~~~~~~~~r~~~aa~~~G~~~ 157 (296)
..++++|+||.+.|||++.+.....+ +++++++.|+||+||+++++|.. .++......+...|+..++ +|+++
T Consensus 179 ~~~~g~~~flV~~~~~Gv~~~~~~~~~~--~~~~~~v~f~~v~Vp~~~~lg~~~~g~~~~~~~l~~~r~g~aa--~g~a~ 254 (395)
T TIGR03204 179 KKQMGISFILVDMKSKGITVRPIQTIDG--GVEVNEVFFDDVEVPYENLVGEENKGWDYAKFLLGNERTGIAR--VGVSK 254 (395)
T ss_pred CCCCCeEEEEEeCCCCCeEecChhhccC--CCceeEEEEcceEEcHHHcCCCCCchHHHHHHHHHHHHHHHHH--HHHHH
Confidence 24689999999999999976555554 66789999999999999999875 5778888888888888765 89999
Q ss_pred HHHHHHHHHHHhhhhhCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCC-CChhHHHHHHHHHHHHHHHHHHH
Q 022503 158 GVYDMCYRYLMERKQFGAPLAAFQITQQKLAQMLGNIQAMNLVGWRLCRMC-ENGK-MSLGQASLGKAWVSARARETVAL 235 (296)
Q Consensus 158 ~~l~~~~~~~~~r~~~~~~~~~~~~~q~~l~~~~~~~~a~~~~~~~~~~~~-d~~~-~~~~~~~~~K~~a~~~a~~~~~~ 235 (296)
++++.+++|+++|++||+||+++|.+|+++++|.++++++|+++|+++... +.+. .....++++|+++++.+.++++.
T Consensus 255 ~~l~~a~~ya~~R~~fg~~i~~~q~vq~~la~~~~~~~aar~l~~~aa~~~~~~~~~~~~~~aa~aK~~~~~~~~~~~~~ 334 (395)
T TIGR03204 255 ERIRRIKDLAAKVESGGKPVIEDAKFREKLAAVEIELKALELTQLRVVADEGKHGKGKPNPASSVLKIKGSEIQQATTEL 334 (395)
T ss_pred HHHHHHHHHHHHHhhcCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999997543 2222 23457999999999999999999
Q ss_pred HHHH----------hCCCCCcCc----ChHHHHhhhcCCcccccchHHHHHHHHHHHHhc
Q 022503 236 GREL----------LGGNGIVTD----FLVGKAFCDFEPFHTGEGSYDINNLIAAREITG 281 (296)
Q Consensus 236 ~~~~----------~G~~g~~~~----~~l~r~~rd~~~~~~~~g~~~~~~~~~~~~~l~ 281 (296)
++|+ |||.||+++ ++++++|||.+...+.+|++++++.+|++.+++
T Consensus 335 a~q~~g~~~~~~~~~Gg~G~~~~~~~~~~~~~~~r~~~~~~i~~Gt~ei~~~~ia~~~l~ 394 (395)
T TIGR03204 335 LMEVIGPFAAPYDVHGDDGSNEAMDWTAQIAPSYFNNRKVSIYGGSNEIQRNIIAKAVLG 394 (395)
T ss_pred HHHhcCcccccccccccccccccchhhhHHHHHHHhccccceeccHHHHHHHHHHHHHcC
Confidence 9985 889999865 469999999999999999999999999999876
No 31
>KOG0137 consensus Very-long-chain acyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=100.00 E-value=8.6e-51 Score=361.33 Aligned_cols=277 Identities=30% Similarity=0.417 Sum_probs=262.2
Q ss_pred hhhhcCCHHHHHHHhHhhhccccceeEEecCCCCCCCcCCCeeEEEEE--CCEEEEEeEEEeecCCCCCCEEEEEEEeCC
Q 022503 3 TIATSGSEAQKRKYLPSLAQLTTMASWALTEPNHGSDASALSTAATKV--EGGWILEGQKRWIGNSTFADVLVVMARNTT 80 (296)
Q Consensus 3 ~l~~~g~~~q~~~~l~~i~~g~~~~~~a~te~~~gs~~~~~~~~a~~~--~~g~~l~G~K~~vt~~~~a~~~lv~a~~~~ 80 (296)
.|..||+++||++|||.+++|+.+++|++|||..|||.....|+++.. ++.|+|||.|.||+|++.||+++|+|+++.
T Consensus 170 ~l~lyGt~~Qk~kYL~~LaSg~~~~A~altE~s~Gsdaas~~~~a~~s~dg~~y~LNG~Kiwisn~g~Adif~VfAqt~~ 249 (634)
T KOG0137|consen 170 GLLLYGTDEQKQKYLPKLASGKLIAAFALTEPSSGSDAASGRTTATLSPDGKHYVLNGSKIWISNGGLADIFTVFAQTEV 249 (634)
T ss_pred eeeecCCHHHHHHHHHhhhcCCccceEEEecCCCCcccccceeeeeecCCCCeEEEcCeeEEEecCccceeeeeeecccc
Confidence 367799999999999999999999999999999999999999999974 556999999999999999999999999862
Q ss_pred C-------CCeEEEEEeCCCCCeEEeecccccccccccccceEeeeeeeCCCCCCCCC-CChHHhhhhhhHHHHHHHHHH
Q 022503 81 T-------KKINAFIVKKDAPGLTATKIENKIGLRMLQNGDILFKKVFVPDEDRLPGF-NSFQDTNIPLSVARVMVAWQT 152 (296)
Q Consensus 81 ~-------~~~~~flv~~~~~Gv~~~~~~~~~g~~~~~~~~~~f~~v~Vp~~~~l~~~-~~~~~~~~~~~~~r~~~aa~~ 152 (296)
+ +++++|||+++..|++-.++..++|.+++++++++|+++.||.+++||.+ +|++..+.++.-+|+..++..
T Consensus 250 ~~~~g~~k~k~T~Flver~~~Gvt~G~~e~k~GiKgsnt~~v~f~~~ki~~envlG~~G~G~kva~nilnsgR~~~aaa~ 329 (634)
T KOG0137|consen 250 DPADGEVKRKITAFLVERDFGGVTNGPPEKKMGIKGSNTAEVHFEGVKIPIENVLGKPGDGFKVAMNILNSGRFGMAAAL 329 (634)
T ss_pred CCCCccccCceEEEEEeccccCccCCCchhhhcccccceeeeeeccccccHHHhcCCCCcchHHHHHHHccCCcchhHHH
Confidence 2 46999999999999999999999999999999999999999999999998 789999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhhCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CCChhHHHHHHHHHHHHHH
Q 022503 153 IGISIGVYDMCYRYLMERKQFGAPLAAFQITQQKLAQMLGNIQAMNLVGWRLCRMCENG--KMSLGQASLGKAWVSARAR 230 (296)
Q Consensus 153 ~G~~~~~l~~~~~~~~~r~~~~~~~~~~~~~q~~l~~~~~~~~a~~~~~~~~~~~~d~~--~~~~~~~~~~K~~a~~~a~ 230 (296)
+|.++++++.+.+|+.+|.|||.++.++..+|.++++|...+++.++++|..+..+|+. .+...++++.|+++.+.++
T Consensus 330 ~G~mkr~I~~~~d~~~~rtQ~g~~L~~~~l~q~k~~~m~~~~Ya~ESm~yl~sg~~D~~~a~d~~lEaai~Ki~a~e~a~ 409 (634)
T KOG0137|consen 330 LGLMKRIIEEAADYATNRTQFGKKLHDFGLIQEKVAEMASKVYATESMLYLLSGLMDEVGAKDVQLEAAILKIFASEQAW 409 (634)
T ss_pred HHHHHHHHHHHHHHhhcceecCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHhcccccccceeeeehHHHHHHHhhhHHH
Confidence 99999999999999999999999999999999999999999999999999999999984 4567789999999999999
Q ss_pred HHHHHHHHHhCCCCCcCcChHHHHhhhcCCcccccchHHHHHHHHHHHH
Q 022503 231 ETVALGRELLGGNGIVTDFLVGKAFCDFEPFHTGEGSYDINNLIAAREI 279 (296)
Q Consensus 231 ~~~~~~~~~~G~~g~~~~~~l~r~~rd~~~~~~~~g~~~~~~~~~~~~~ 279 (296)
.++++++|++||.||+.+++++|.+||++.+.+++|++++++..|+.--
T Consensus 410 ~v~se~iqi~Gg~g~m~d~g~Er~LRD~ri~~I~egtndvLrlfiAltg 458 (634)
T KOG0137|consen 410 AVVSEAIQIVGGMGYMRDTGLERLLRDARILRIFEGTNDVLRLFIALTG 458 (634)
T ss_pred HHHHhhhheeccccccccCchHHHhhhhheeeeecCchhHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999887643
No 32
>cd01152 ACAD_fadE6_17_26 Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26. Putative acyl-CoA dehydrogenases (ACAD). Mitochondrial acyl-CoA dehydrogenases (ACAD) catalyze the alpha, beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. The mitochondrial ACD's are generally homotetramers and have an active site glutamate at a conserved position.
Probab=100.00 E-value=3.5e-49 Score=357.08 Aligned_cols=273 Identities=26% Similarity=0.412 Sum_probs=247.5
Q ss_pred hhhhcCCHHHHHHHhHhhhccccceeEEecCCCCCCCcCCCeeEEEEECCEEEEEeEEEeecCCCCCCEEEEEEEeCCC-
Q 022503 3 TIATSGSEAQKRKYLPSLAQLTTMASWALTEPNHGSDASALSTAATKVEGGWILEGQKRWIGNSTFADVLVVMARNTTT- 81 (296)
Q Consensus 3 ~l~~~g~~~q~~~~l~~i~~g~~~~~~a~te~~~gs~~~~~~~~a~~~~~g~~l~G~K~~vt~~~~a~~~lv~a~~~~~- 81 (296)
.|..+|+++|+++||+++.+|+.++++++|||+.|||...+.++++++++||+|||.|.|+|++..+|+++|+++++++
T Consensus 95 ~l~~~g~~~~~~~~l~~~~~g~~~~~~a~tE~~~gsd~~~~~t~a~~~~~g~~L~G~K~~it~~~~ad~~lv~a~~~~~~ 174 (380)
T cd01152 95 TILAYGTDEQKRRFLPPILSGEEIWCQGFSEPGAGSDLAGLRTRAVRDGDDWVVNGQKIWTSGAHYADWAWLLVRTDPEA 174 (380)
T ss_pred HHHHhCCHHHHHHHhHHHhCCchhheeecCCCCCCcchhhCeeeEEEcCCeEEEecEEEEEcCccccCEEEEEEEeCCCc
Confidence 5788999999999999999999999999999999999999999999999999999999999999999999999997542
Q ss_pred ---CCeEEEEEeCCCCCeEEeecccccccccccccceEeeeeeeCCCCCCCCC-CChHHhhhhhhHHHHHHHHHHHHHHH
Q 022503 82 ---KKINAFIVKKDAPGLTATKIENKIGLRMLQNGDILFKKVFVPDEDRLPGF-NSFQDTNIPLSVARVMVAWQTIGISI 157 (296)
Q Consensus 82 ---~~~~~flv~~~~~Gv~~~~~~~~~g~~~~~~~~~~f~~v~Vp~~~~l~~~-~~~~~~~~~~~~~r~~~aa~~~G~~~ 157 (296)
+++++|+||++.||+++.+.|.++| +++++++.|+||+||.+++|+.+ .++......+...|+..+ |++.
T Consensus 175 ~~~~~~~~~lVp~~~~Gv~~~~~~~~~g--~~~~~~l~f~~v~Vp~~~~lg~~~~g~~~~~~~l~~~r~~~~----~~~~ 248 (380)
T cd01152 175 PKHRGISILLVDMDSPGVTVRPIRSING--GEFFNEVFLDDVRVPDANRVGEVNDGWKVAMTTLNFERVSIG----GSAA 248 (380)
T ss_pred cCcCCeEEEEEeCCCCceEeeehhhccC--CCCcceEEecCcCcchhcccCCCCchHHHHHHHHHhcccccc----hhhh
Confidence 4688999999999999999998877 56889999999999999999876 567777777777777655 4455
Q ss_pred HHHHHHHHHHHhhhhhCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHHHHHHHH
Q 022503 158 GVYDMCYRYLMERKQFGAPLAAFQITQQKLAQMLGNIQAMNLVGWRLCRMCENGKMSLGQASLGKAWVSARARETVALGR 237 (296)
Q Consensus 158 ~~l~~~~~~~~~r~~~~~~~~~~~~~q~~l~~~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~~K~~a~~~a~~~~~~~~ 237 (296)
++++.+++|+++|.+||+|+.++|.+|+++++|.+++++++++++++++.++.+......++++|+++++.+.++++.++
T Consensus 249 ~~~~~a~~~a~~r~~~g~~l~~~~~vq~~la~~~~~l~~a~~l~~~aa~~~~~~~~~~~~~a~aK~~~~~~a~~v~~~a~ 328 (380)
T cd01152 249 TFFELLLARLLLLTRDGRPLIDDPLVRQRLARLEAEAEALRLLVFRLASALAAGKPPGAEASIAKLFGSELAQELAELAL 328 (380)
T ss_pred HHHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHH
Confidence 55667788999999999999999999999999999999999999999999988655556789999999999999999999
Q ss_pred HHhCCCCCcCc--------ChHHHHhhhcCCcccccchHHHHHHHHHHHHhc
Q 022503 238 ELLGGNGIVTD--------FLVGKAFCDFEPFHTGEGSYDINNLIAAREITG 281 (296)
Q Consensus 238 ~~~G~~g~~~~--------~~l~r~~rd~~~~~~~~g~~~~~~~~~~~~~l~ 281 (296)
+++||.||+++ ++++|++||++...+++|++++++..+++.++|
T Consensus 329 ~i~Gg~g~~~~~~~~~~~~~~~~r~~rd~~~~~~~~g~~~~~~~~i~~~~~~ 380 (380)
T cd01152 329 ELLGTAALLRDPAPGAELAGRWEADYLRSRATTIYGGTSEIQRNIIAERLLG 380 (380)
T ss_pred HhcCccccccccccccccccHHHHHHHhCccceeeccHHHHHHHHHHHHhcC
Confidence 99999999998 699999999999999999999999999999886
No 33
>cd01153 ACAD_fadE5 Putative acyl-CoA dehydrogenases similar to fadE5. Putative acyl-CoA dehydrogenase (ACAD). Mitochondrial acyl-CoA dehydrogenases (ACAD) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. The mitochondrial ACD's are generally homotetramers and have an active site glutamate at a conserved position.
Probab=100.00 E-value=7.6e-49 Score=357.62 Aligned_cols=273 Identities=25% Similarity=0.324 Sum_probs=247.0
Q ss_pred hhhhcCCHHHHHHHhHhhhccccceeEEecCCCCCCCcCCCeeEEEEE-CCEEEEEeEEEeecCCCCC----CEEEEEEE
Q 022503 3 TIATSGSEAQKRKYLPSLAQLTTMASWALTEPNHGSDASALSTAATKV-EGGWILEGQKRWIGNSTFA----DVLVVMAR 77 (296)
Q Consensus 3 ~l~~~g~~~q~~~~l~~i~~g~~~~~~a~te~~~gs~~~~~~~~a~~~-~~g~~l~G~K~~vt~~~~a----~~~lv~a~ 77 (296)
.|..+|+++||++|++++.+|+.++++++|||+.|||...+.|+++++ +|||+|||+|.|+|++.+| ++++|+++
T Consensus 95 ~l~~~g~~~~~~~~l~~i~~G~~~~~~a~tEp~~gsd~~~~~t~a~~~~~ggy~l~G~K~~is~~~~a~~~~~~~~v~a~ 174 (407)
T cd01153 95 TLLAHGTEAQREKWIPRLAEGEWTGTMCLTEPDAGSDLGALRTKAVYQADGSWRINGVKRFISAGEHDMSENIVHLVLAR 174 (407)
T ss_pred HHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCCCcccceEEEEECCCCcEEEeeEEEEEeCCCcccccccEEEEEEe
Confidence 567889999999999999999999999999999999999999999998 5689999999999999876 57888898
Q ss_pred eCCC----CCeEEEEEeCCC-----CCeEEeecccccccccccccceEeeeeeeCCCCCCCCC-CChHHhhhhhhHHHHH
Q 022503 78 NTTT----KKINAFIVKKDA-----PGLTATKIENKIGLRMLQNGDILFKKVFVPDEDRLPGF-NSFQDTNIPLSVARVM 147 (296)
Q Consensus 78 ~~~~----~~~~~flv~~~~-----~Gv~~~~~~~~~g~~~~~~~~~~f~~v~Vp~~~~l~~~-~~~~~~~~~~~~~r~~ 147 (296)
++++ +++++|+||++. |||++.+.|+++|+++++++++.|+||+|| +++.+ .++......+...|+.
T Consensus 175 ~~~~~~~~~~~~~flVp~~~~~~~~~gv~i~~~~~~~G~r~t~s~~v~f~~v~Vp---~lg~~~~g~~~~~~~l~~~r~~ 251 (407)
T cd01153 175 SEGAPPGVKGLSLFLVPKFLDDGERNGVTVARIEEKMGLHGSPTCELVFDNAKGE---LIGEEGMGLAQMFAMMNGARLG 251 (407)
T ss_pred CCCCCCCCCceEEEEEeccCcCCCCCCeEeccchhccCCCCCCeEEEEEcCEEEe---eeCCCCccHHHHHHHHHHHHHH
Confidence 6531 368999999987 899999999999999999999999999999 77765 5777778888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhCcc--------cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC-----
Q 022503 148 VAWQTIGISIGVYDMCYRYLMERKQFGAP--------LAAFQITQQKLAQMLGNIQAMNLVGWRLCRMCENGKMS----- 214 (296)
Q Consensus 148 ~aa~~~G~~~~~l~~~~~~~~~r~~~~~~--------~~~~~~~q~~l~~~~~~~~a~~~~~~~~~~~~d~~~~~----- 214 (296)
+++.++|+++++++.+++|+++|.+||+| +.++|.+|++++++.+++++++++++++++.+|.....
T Consensus 252 ~aa~~lG~a~~al~~a~~~a~~R~~fg~~i~~~~~~~~~~~~~iq~~la~~~a~~~a~~~~~~~aa~~~d~~~~~~~~~~ 331 (407)
T cd01153 252 VGTQGTGLAEAAYLNALAYAKERKQGGDLIKAAPAVTIIHHPDVRRSLMTQKAYAEGSRALDLYTATVQDLAERKATEGE 331 (407)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCeecCCcCccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhh
Confidence 99999999999999999999999999999 78899999999999999999999999999988865311
Q ss_pred ---------hhHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcCcChHHHHhhhcCCcccccchHHHHHH-HHHHH
Q 022503 215 ---------LGQASLGKAWVSARARETVALGRELLGGNGIVTDFLVGKAFCDFEPFHTGEGSYDINNL-IAARE 278 (296)
Q Consensus 215 ---------~~~~~~~K~~a~~~a~~~~~~~~~~~G~~g~~~~~~l~r~~rd~~~~~~~~g~~~~~~~-~~~~~ 278 (296)
...++++|+++++.+.++++.+++++||.||.++++++|+|||+++..+++|++++++. .+++.
T Consensus 332 ~~~~~~~~~~~~~~~aK~~~~~~a~~v~~~a~~~~Gg~g~~~~~~l~r~~Rd~~~~~~~~Gt~~~~~~~~~~~~ 405 (407)
T cd01153 332 DRKALSALADLLTPVVKGFGSEAALEAVSDAIQVHGGSGYTREYPIEQYYRDARITTIYEGTTGIQALDLIGRK 405 (407)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCceecCCCcHHHHHHhhhhheeecChHHHHHHHHhhcc
Confidence 23457899999999999999999999999999999999999999999999999998877 44443
No 34
>PTZ00456 acyl-CoA dehydrogenase; Provisional
Probab=100.00 E-value=6.4e-49 Score=370.23 Aligned_cols=278 Identities=19% Similarity=0.225 Sum_probs=251.5
Q ss_pred hhhhhcCCHHHHHHHhHhhhccccceeEEecCCCCCCCcCCCeeEEEEECC-EEEEEeEEEeecCCCCC----CEEEEEE
Q 022503 2 LTIATSGSEAQKRKYLPSLAQLTTMASWALTEPNHGSDASALSTAATKVEG-GWILEGQKRWIGNSTFA----DVLVVMA 76 (296)
Q Consensus 2 ~~l~~~g~~~q~~~~l~~i~~g~~~~~~a~te~~~gs~~~~~~~~a~~~~~-g~~l~G~K~~vt~~~~a----~~~lv~a 76 (296)
.+|..+|+++||++|||++.+|++++++++|||++|||...+.|+|++++| +|+|||+|.|||++.++ ++++|+|
T Consensus 158 ~~L~~~Gs~eqk~~~Lp~l~sGe~~~t~alTEp~aGSD~~~l~T~A~~~gdG~y~L~G~K~fIt~g~~~~~~n~~~lVlA 237 (622)
T PTZ00456 158 NTLMAWGSEEQKEQYLTKLVSGEWSGTMCLTEPQCGTDLGQVKTKAEPSADGSYKITGTKIFISAGDHDLTENIVHIVLA 237 (622)
T ss_pred HHHHHhCCHHHHHHHHHHHhcCChhhhhhccCCccCCCcccCeeEEEECCCCcEEEeeEEEEecCCchhhccCcEEEEEE
Confidence 367889999999999999999999999999999999999999999999887 49999999999999863 6789999
Q ss_pred EeCC----CCCeEEEEEeCCC----------CCeEEeecccccccccccccceEeeeeeeCCCCCCCCC-CChHHhhhhh
Q 022503 77 RNTT----TKKINAFIVKKDA----------PGLTATKIENKIGLRMLQNGDILFKKVFVPDEDRLPGF-NSFQDTNIPL 141 (296)
Q Consensus 77 ~~~~----~~~~~~flv~~~~----------~Gv~~~~~~~~~g~~~~~~~~~~f~~v~Vp~~~~l~~~-~~~~~~~~~~ 141 (296)
++++ .+++++|+||++. +||++...+.++|+++++++++.|+| |.+++||.+ .|+......+
T Consensus 238 r~~~~~~g~~GiSlFlVp~~~~~~~G~~~~~~gv~~~~~~~kmG~~gs~t~~l~fd~---~~~~llG~~~~Gl~~~~~~m 314 (622)
T PTZ00456 238 RLPNSLPTTKGLSLFLVPRHVVKPDGSLETAKNVKCIGLEKKMGIKGSSTCQLSFEN---SVGYLIGEPNAGMKQMFTFM 314 (622)
T ss_pred EecCCCCCCCceEEEEEeCCCCCcCCCccCCCCeeecCcccccCCCCCceEEEEeeC---hhHhhcCCCChHHHHHHHHH
Confidence 9863 2679999999865 46888888899999999999999999 467899887 5788888889
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh------------CcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022503 142 SVARVMVAWQTIGISIGVYDMCYRYLMERKQF------------GAPLAAFQITQQKLAQMLGNIQAMNLVGWRLCRMCE 209 (296)
Q Consensus 142 ~~~r~~~aa~~~G~~~~~l~~~~~~~~~r~~~------------~~~~~~~~~~q~~l~~~~~~~~a~~~~~~~~~~~~d 209 (296)
+..|+.+++.++|+++++++.+++|+++|.|| ++||.++|.+|++|+++.+.+|++|+++++++..+|
T Consensus 315 n~aRl~vaa~~lG~a~~Al~~Al~YAk~R~Qfr~~~~~~~~~~~~~~I~~~~~Vr~~L~~~~a~~eaaral~~~aA~~~D 394 (622)
T PTZ00456 315 NTARVGTALEGVCHAELAFQNALRYARERRSMRALSGTKEPEKPADRIICHANVRQNILFAKAVAEGGRALLLDVGRLLD 394 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCccccccccccCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999984 788999999999999999999999999999999988
Q ss_pred cCC---C----------ChhHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcCcChHHHHhhhcCCcccccchHHHHHH-HH
Q 022503 210 NGK---M----------SLGQASLGKAWVSARARETVALGRELLGGNGIVTDFLVGKAFCDFEPFHTGEGSYDINNL-IA 275 (296)
Q Consensus 210 ~~~---~----------~~~~~~~~K~~a~~~a~~~~~~~~~~~G~~g~~~~~~l~r~~rd~~~~~~~~g~~~~~~~-~~ 275 (296)
... + ....++++|+++++.+.++++.++|+|||+||+++++++|+|||++...+++|++++++. .+
T Consensus 395 ~~~~~~~~~~~~~~~~~~~~~t~iaK~~~te~a~~va~~aiQv~GG~Gy~~e~~ler~~RDari~~i~eGt~~iq~~dli 474 (622)
T PTZ00456 395 IHAAAKDAATREALDHEIGFYTPIAKGCLTEWGVEAASRCLQVWGGHGYIKGNGMEQILRDARIGTLYEGTTGIQALDFI 474 (622)
T ss_pred hcccccchhhHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhccCCCccCCchHHHHHHHhhcccccCChHHHHHHHHH
Confidence 642 1 123578999999999999999999999999999999999999999999999999999974 88
Q ss_pred HHHHhcC
Q 022503 276 AREITGF 282 (296)
Q Consensus 276 ~~~~l~~ 282 (296)
+|.++|.
T Consensus 475 ~rkllg~ 481 (622)
T PTZ00456 475 GRKVLSL 481 (622)
T ss_pred HHHhhCC
Confidence 9998854
No 35
>cd01150 AXO Peroxisomal acyl-CoA oxidase. Peroxisomal acyl-CoA oxidases (AXO) catalyze the first set in the peroxisomal fatty acid beta-oxidation, the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. In a second oxidative half-reaction, the reduced FAD is reoxidized by molecular oxygen. AXO is generally a homodimer, but it has been reported to form a different type of oligomer in yeast. There are several subtypes of AXO's, based on substrate specificity. Palmitoyl-CoA oxidase acts on straight-chain fatty acids and prostanoids; whereas, the closely related Trihydroxycoprostanoly-CoA oxidase has the greatest activity for 2-methyl branched side chains of bile precursors. Pristanoyl-CoA oxidase, acts on 2-methyl branched fatty acids. AXO has an additional domain, C-terminal to the region with similarity to acyl-CoA dehydrogenases, which is included in this alignment.
Probab=100.00 E-value=5.1e-49 Score=372.13 Aligned_cols=282 Identities=26% Similarity=0.289 Sum_probs=251.6
Q ss_pred hhhhhcCCHHHHHHHhHhhhccccceeEEecCCCCCCCcCCCeeEEEEEC--CEEEEE-----eEEEeecCCC-CCCEEE
Q 022503 2 LTIATSGSEAQKRKYLPSLAQLTTMASWALTEPNHGSDASALSTAATKVE--GGWILE-----GQKRWIGNST-FADVLV 73 (296)
Q Consensus 2 ~~l~~~g~~~q~~~~l~~i~~g~~~~~~a~te~~~gs~~~~~~~~a~~~~--~g~~l~-----G~K~~vt~~~-~a~~~l 73 (296)
.+|..+||++|+++|||.+.+|+.++|+++|||++|||...++|+|++++ ++|+|| |.|+|++|++ .|++++
T Consensus 111 ~~i~~~Gt~eq~~~~L~~~~~g~~ig~~a~TE~ghGSdv~~leTtAt~d~~t~efvLntp~~~g~K~wi~~~~~~a~~~v 190 (610)
T cd01150 111 NAIKNLGTDEHQDYWLQGANNLEIIGCFAQTELGHGSNLQGLETTATYDPLTQEFVINTPDFTATKWWPGNLGKTATHAV 190 (610)
T ss_pred HHHHHhCCHHHHHHHHHHHhccChheeeeccccCcCcCcccceeEEEECCCCCeEEECCCCCCceEECccCcccCCCEEE
Confidence 46888999999999999999999999999999999999999999999988 889999 9999999975 599999
Q ss_pred EEEEeCC---CCCeEEEEEeCC-------CCCeEEeecccccccccccccceEeeeeeeCCCCCCCC-------------
Q 022503 74 VMARNTT---TKKINAFIVKKD-------APGLTATKIENKIGLRMLQNGDILFKKVFVPDEDRLPG------------- 130 (296)
Q Consensus 74 v~a~~~~---~~~~~~flv~~~-------~~Gv~~~~~~~~~g~~~~~~~~~~f~~v~Vp~~~~l~~------------- 130 (296)
|+|++.. +.|+++|+||.+ .|||++.+.++++|+++.+++.+.||||+||.+++|+.
T Consensus 191 V~Arl~~~g~~~Gv~~FlVp~rd~~~~~~~pGV~i~~~~~k~G~~g~dng~l~Fd~vrVP~~nlL~~~~~v~~~G~~~~~ 270 (610)
T cd01150 191 VFAQLITPGKNHGLHAFIVPIRDPKTHQPLPGVTVGDIGPKMGLNGVDNGFLQFRNVRIPRENLLNRFGDVSPDGTYVSP 270 (610)
T ss_pred EEEEeccCCCCCCeEEEEEeccccccCCCCCCeEEeecccccCCCCCCeEEEEEeeeEecHHHhcccccccCCCCceecC
Confidence 9999732 358999999963 39999999999999999999999999999999999975
Q ss_pred ---C-CChHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhCcc-------cccchhHHHHHHHHHHHHHHHHH
Q 022503 131 ---F-NSFQDTNIPLSVARVMVAWQTIGISIGVYDMCYRYLMERKQFGAP-------LAAFQITQQKLAQMLGNIQAMNL 199 (296)
Q Consensus 131 ---~-~~~~~~~~~~~~~r~~~aa~~~G~~~~~l~~~~~~~~~r~~~~~~-------~~~~~~~q~~l~~~~~~~~a~~~ 199 (296)
+ .++......+..+|+.+++.++|.++++++.+++|++.|++||+| |.++|.+|++|+++.+..++.+.
T Consensus 271 ~~~~~~g~~~~~~~~~~gRl~ia~~a~g~~~~al~iAi~Ya~~R~qfg~~~~~~e~~I~~~q~~q~rL~~~la~~~a~~~ 350 (610)
T cd01150 271 FKDPNKRYGAMLGTRSGGRVGLIYDAAMSLKKAATIAIRYSAVRRQFGPKPSDPEVQILDYQLQQYRLFPQLAAAYAFHF 350 (610)
T ss_pred CCchhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHeeeecCCCCCCCcchhhccHhHHHHHHHHHHHHHHHHH
Confidence 2 345667778888999999999999999999999999999999999 99999999999999999998775
Q ss_pred HHHHH----HH---HHHcCC-----CChhHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcCcChHHHHhhhcCCcccccch
Q 022503 200 VGWRL----CR---MCENGK-----MSLGQASLGKAWVSARARETVALGRELLGGNGIVTDFLVGKAFCDFEPFHTGEGS 267 (296)
Q Consensus 200 ~~~~~----~~---~~d~~~-----~~~~~~~~~K~~a~~~a~~~~~~~~~~~G~~g~~~~~~l~r~~rd~~~~~~~~g~ 267 (296)
..... .+ ..+++. +....++++|.++++.+.++++.|+++|||+||+.++++++++||.+...+++|+
T Consensus 351 ~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~aa~~K~~~t~~a~~~~~~~rq~~GG~Gy~~~~~l~~l~~d~~~~~t~EG~ 430 (610)
T cd01150 351 AAKSLVEMYHEIIKELLQGNSELLAELHALSAGLKAVATWTAAQGIQECREACGGHGYLAMNRLPTLRDDNDPFCTYEGD 430 (610)
T ss_pred HHHHHHHHHHHHHHHhhccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccchhhcChHHHHhhccceeeeecc
Confidence 43332 22 333331 2345788999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCc
Q 022503 268 YDINNLIAAREITGFA 283 (296)
Q Consensus 268 ~~~~~~~~~~~~l~~~ 283 (296)
+++++.++++.+++..
T Consensus 431 n~vl~~~iar~ll~~~ 446 (610)
T cd01150 431 NTVLLQQTANYLLKKY 446 (610)
T ss_pred hHhHHHHHHHHHHHHH
Confidence 9999999999998753
No 36
>PLN02443 acyl-coenzyme A oxidase
Probab=100.00 E-value=7.2e-48 Score=364.66 Aligned_cols=281 Identities=25% Similarity=0.322 Sum_probs=249.0
Q ss_pred hhhhhcCCHHHHHHHhHhhhccccceeEEecCCCCCCCcCCCeeEEEEE--CCEEEEE-----eEEEeecCC-CCCCEEE
Q 022503 2 LTIATSGSEAQKRKYLPSLAQLTTMASWALTEPNHGSDASALSTAATKV--EGGWILE-----GQKRWIGNS-TFADVLV 73 (296)
Q Consensus 2 ~~l~~~g~~~q~~~~l~~i~~g~~~~~~a~te~~~gs~~~~~~~~a~~~--~~g~~l~-----G~K~~vt~~-~~a~~~l 73 (296)
.+|..+||++||++|||.+.+|+.++||++|||++|||...++|+|+++ +|+|+|| |.|+|++++ ..|++++
T Consensus 108 ~~I~~~GT~eQk~~~L~~~~~g~iig~fA~TE~ghGSdv~~leTtAt~d~~~~efvIntP~~~g~K~wig~~~~~A~~~v 187 (664)
T PLN02443 108 PAIKGQGTEEQQKKWLPLAYKMQIIGCYAQTELGHGSNVQGLETTATFDPKTDEFVIHSPTLTSSKWWPGGLGKVSTHAV 187 (664)
T ss_pred HHHHHhCCHHHHHHHHHHHhCCChheEEEecCCCcccchhhCeEEEEEeCCCCEEEECCCCCCEEEEeecCCcccCCEEE
Confidence 4677899999999999999999999999999999999999999999998 6789998 999999997 7899999
Q ss_pred EEEEeCC---CCCeEEEEEeCC-------CCCeEEeecccccc---cccccccceEeeeeeeCCCCCCCCC-----CCh-
Q 022503 74 VMARNTT---TKKINAFIVKKD-------APGLTATKIENKIG---LRMLQNGDILFKKVFVPDEDRLPGF-----NSF- 134 (296)
Q Consensus 74 v~a~~~~---~~~~~~flv~~~-------~~Gv~~~~~~~~~g---~~~~~~~~~~f~~v~Vp~~~~l~~~-----~~~- 134 (296)
|+|++.. +.|+++|+||.+ .|||++.+.++++| .++.+++.+.|+||+||.+++|+.. +|.
T Consensus 188 V~Arl~~~~~~~Gv~~FlVp~r~~~~~~~~PGV~vgd~g~K~G~~~~~~~dng~l~Fd~VrVP~~nlLg~~~~v~~~G~~ 267 (664)
T PLN02443 188 VYARLITNGKDHGIHGFIVQLRSLDDHSPLPGVTVGDIGMKFGNGAYNTMDNGFLRFDHVRIPRDQMLMRLSKVTREGKY 267 (664)
T ss_pred EEEEECCCCCCCCeEEEEEecCCcCcCCCCCCeEEeccccccCcccCCCCcceEEEeCcEEECHHHcCCcccccCCCCce
Confidence 9999742 258999999975 79999999999999 5668999999999999999999753 121
Q ss_pred -------HHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhCcccc--cchhH-----HHHHHHHHHHHHHHHHH
Q 022503 135 -------QDTNIPLSVARVMVAWQTIGISIGVYDMCYRYLMERKQFGAPLA--AFQIT-----QQKLAQMLGNIQAMNLV 200 (296)
Q Consensus 135 -------~~~~~~~~~~r~~~aa~~~G~~~~~l~~~~~~~~~r~~~~~~~~--~~~~~-----q~~l~~~~~~~~a~~~~ 200 (296)
+.....+...|+.+++.++|.++.+++.+++|+..|++||+|++ ++|.+ |++|.++.+.+++++.+
T Consensus 268 ~~~~~~~~~~~~~l~~~R~~i~a~a~g~~~~Al~iAvrYa~~R~QFg~~~~~~e~qii~y~~~Q~rL~~~la~~~a~r~~ 347 (664)
T PLN02443 268 VQSDVPRQLVYGTMVYVRQTIVADASTALSRAVCIATRYSAVRRQFGSQDGGPETQVIDYKTQQSRLFPLLASAYAFRFV 347 (664)
T ss_pred ecccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccEeCCCCCCccchhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 23345677789999999999999999999999999999999987 55555 99999999999999999
Q ss_pred HHHHHHHHHc------CCC------ChhHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcCcChHHHHhhhcCCcccccchH
Q 022503 201 GWRLCRMCEN------GKM------SLGQASLGKAWVSARARETVALGRELLGGNGIVTDFLVGKAFCDFEPFHTGEGSY 268 (296)
Q Consensus 201 ~~~~~~~~d~------~~~------~~~~~~~~K~~a~~~a~~~~~~~~~~~G~~g~~~~~~l~r~~rd~~~~~~~~g~~ 268 (296)
.+++.+.+++ ..+ ....++++|.++++.+.++++.|+++|||+||+.++++++++||++...+++|++
T Consensus 348 ~~~a~~~~~~~~~~~~~~~~~~~~e~h~~aa~~Ka~~t~~a~~~i~~~rq~cGG~Gy~~~~~l~~l~~d~~~~~t~EGdn 427 (664)
T PLN02443 348 GEWLKWLYTDVTQRLEANDFSTLPEAHACTAGLKSLTTSATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDN 427 (664)
T ss_pred HHHHHHHHHHHHHhhhcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccccccCcHHHHHhhhhcceeecCcH
Confidence 9999887663 111 1234789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcC
Q 022503 269 DINNLIAAREITGF 282 (296)
Q Consensus 269 ~~~~~~~~~~~l~~ 282 (296)
++++.++++.+++.
T Consensus 428 ~Vl~~~iar~ll~~ 441 (664)
T PLN02443 428 VVLLLQVARFLMKT 441 (664)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999988763
No 37
>cd01163 DszC Dibenzothiophene (DBT) desulfurization enzyme C. DszC is a flavin reductase dependent enzyme, which catalyzes the first two steps of DBT desulfurization in mesophilic bacteria. DszC converts DBT to DBT-sulfoxide, which is then converted to DBT-sulfone. Bacteria with this enzyme are candidates for the removal of organic sulfur compounds from fossil fuels, which pollute the environment. An equivalent enzyme tdsC, is found in thermophilic bacteria. This alignment also contains a closely related uncharacterized subgroup.
Probab=100.00 E-value=3.2e-47 Score=344.11 Aligned_cols=275 Identities=16% Similarity=0.196 Sum_probs=240.3
Q ss_pred hhhhcCCHHHHHHHhHhhhccccceeEEecCCCCCCCcCCCeeEEEEECCEEEEEeEEEeecCCCCCCEEEEEEEeCCCC
Q 022503 3 TIATSGSEAQKRKYLPSLAQLTTMASWALTEPNHGSDASALSTAATKVEGGWILEGQKRWIGNSTFADVLVVMARNTTTK 82 (296)
Q Consensus 3 ~l~~~g~~~q~~~~l~~i~~g~~~~~~a~te~~~gs~~~~~~~~a~~~~~g~~l~G~K~~vt~~~~a~~~lv~a~~~~~~ 82 (296)
+|..+|+++||++|++.+.+|+.++ .++|||+.++ .....+++++++|||+|||+|.|+|++..||+++|++++++ +
T Consensus 82 ~l~~~g~~~~~~~~l~~~~~g~~~~-~a~tE~~~~~-~~~~~~~~~~~~~g~~lnG~K~~is~a~~Ad~~~v~a~~~~-~ 158 (377)
T cd01163 82 ALLLAGPEQFRKRWFGRVLNGWIFG-NAVSERGSVR-PGTFLTATVRDGGGYVLNGKKFYSTGALFSDWVTVSALDEE-G 158 (377)
T ss_pred HHHhcCcHHHHHHHHHHHhCCCeEE-EeecCCCCCC-CCCceEEEEecCCEEEEeceEEeecCCccceEEEEEEEcCC-C
Confidence 5778999999999999999999664 6999998875 56677778888899999999999999999999999999754 5
Q ss_pred CeEEEEEeCCCCCeEEeecccccccccccccceEeeeeeeCCCCCCCCCC-ChHHhhhhhhHHHHHHHHHHHHHHHHHHH
Q 022503 83 KINAFIVKKDAPGLTATKIENKIGLRMLQNGDILFKKVFVPDEDRLPGFN-SFQDTNIPLSVARVMVAWQTIGISIGVYD 161 (296)
Q Consensus 83 ~~~~flv~~~~~Gv~~~~~~~~~g~~~~~~~~~~f~~v~Vp~~~~l~~~~-~~~~~~~~~~~~r~~~aa~~~G~~~~~l~ 161 (296)
+.++|+||.+.|||++.+.|+++|++++++++++|+||+||++++++.+. ++. ....+..+++.+++.++|+++++++
T Consensus 159 ~~~~~lV~~~~~Gv~i~~~~~~~G~~~~~s~~v~f~~v~Vp~~~~lg~~~~g~~-~~~~~~~~~l~~aa~~lG~a~~al~ 237 (377)
T cd01163 159 KLVFAAVPTDRPGITVVDDWDGFGQRLTASGTVTFDNVRVEPDEVLPRPNAPDR-GTLLTAIYQLVLAAVLAGIARAALD 237 (377)
T ss_pred cEEEEEEeCCCCceeecCCcccccCccCCcceEEEeeEEECHHHccCCCccccc-cccccHHHHHHHHHHHHHHHHHHHH
Confidence 67889999999999999999999999999999999999999999998763 333 2344567889999999999999999
Q ss_pred HHHHHHHhhh-hhCc----ccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC------------CChhHHHHHHHH
Q 022503 162 MCYRYLMERK-QFGA----PLAAFQITQQKLAQMLGNIQAMNLVGWRLCRMCENGK------------MSLGQASLGKAW 224 (296)
Q Consensus 162 ~~~~~~~~r~-~~~~----~~~~~~~~q~~l~~~~~~~~a~~~~~~~~~~~~d~~~------------~~~~~~~~~K~~ 224 (296)
.+++|+++|. +|++ ++.++|.+|++++++.++++++|++++++++.+|++. +....++++|++
T Consensus 238 ~~~~~~~~R~~~~g~~~~~~~~~~~~v~~~la~~~~~l~aar~~~~~aa~~~d~~~~~~~~~~~~~~~~~~~~~~~aK~~ 317 (377)
T cd01163 238 DAVAYVRSRTRPWIHSGAESARDDPYVQQVVGDLAARLHAAEALVLQAARALDAAAAAGTALTAEARGEAALAVAAAKVV 317 (377)
T ss_pred HHHHHHHhcCCCCCcCCccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHH
Confidence 9999999995 6776 4789999999999999999999999999999887641 113467899999
Q ss_pred HHHHHHHHHHHHHHHhCCCCCcCcChHHHHhhhcCCcccccchHHHHHHHHHHHHhcC
Q 022503 225 VSARARETVALGRELLGGNGIVTDFLVGKAFCDFEPFHTGEGSYDINNLIAAREITGF 282 (296)
Q Consensus 225 a~~~a~~~~~~~~~~~G~~g~~~~~~l~r~~rd~~~~~~~~g~~~~~~~~~~~~~l~~ 282 (296)
+++.+.++++.+++++|+.||+++++++|+|||++...++.... ....+++...++.
T Consensus 318 ~~~~a~~~~~~a~q~~Gg~g~~~~~~l~r~~Rd~~~~~~h~~~~-~~~~~~~~~~~~~ 374 (377)
T cd01163 318 VTRLALDATSRLFEVGGASATAREHNLDRHWRNARTHTLHNPVI-YKERAVGDYALNG 374 (377)
T ss_pred HHHHHHHHHHHHHHHhCchhhccccCCcchhhhhhhhhccCHHH-HHHHHhchhhcCC
Confidence 99999999999999999999999999999999999999888774 4445677766654
No 38
>KOG1469 consensus Predicted acyl-CoA dehydrogenase [General function prediction only]
Probab=100.00 E-value=1.3e-44 Score=294.13 Aligned_cols=281 Identities=18% Similarity=0.260 Sum_probs=259.7
Q ss_pred hhhhhcCCHHHHHHHhHhhhccccceeEEecCCCC-CCCcCCCeeEEEEECCEEEEEeEEEeecCC--CCCCEEEEEEEe
Q 022503 2 LTIATSGSEAQKRKYLPSLAQLTTMASWALTEPNH-GSDASALSTAATKVEGGWILEGQKRWIGNS--TFADVLVVMARN 78 (296)
Q Consensus 2 ~~l~~~g~~~q~~~~l~~i~~g~~~~~~a~te~~~-gs~~~~~~~~a~~~~~g~~l~G~K~~vt~~--~~a~~~lv~a~~ 78 (296)
+.|..||++|||.+||-++.+|++..||++|||.- .||.-++++..++++|.|+|||.|+|+||+ +.+.++++..++
T Consensus 90 Evl~rYGseeQks~WL~PLLeG~irScFaMTEP~VASSDATNIe~SI~r~~~~YvINg~KWw~sga~~PkCrv~i~mGkt 169 (392)
T KOG1469|consen 90 EVLHRYGSEEQKSQWLIPLLEGNIRSCFAMTEPDVASSDATNIECSIRRDGDSYVINGKKWWISGAGDPKCRIAIFMGKT 169 (392)
T ss_pred eehhhhCCHHHHhhHhHHHhcCCceeeEeecCCcccccccccceEEEEEcCCEEEEecceeeecCCCCCceEEEEEeccc
Confidence 56889999999999999999999999999999986 789999999999999999999999999997 667899999998
Q ss_pred CCC-----CCeEEEEEeCCCCCeEEeecccccccccccc--cceEeeeeeeCCCCCC-CCCCChHHhhhhhhHHHHHHHH
Q 022503 79 TTT-----KKINAFIVKKDAPGLTATKIENKIGLRMLQN--GDILFKKVFVPDEDRL-PGFNSFQDTNIPLSVARVMVAW 150 (296)
Q Consensus 79 ~~~-----~~~~~flv~~~~~Gv~~~~~~~~~g~~~~~~--~~~~f~~v~Vp~~~~l-~~~~~~~~~~~~~~~~r~~~aa 150 (296)
+.. ++.++.|||+++|||++..+....|....+. .+++|+||+||..|++ |.++||++.+..+..+|+..|.
T Consensus 170 ~~~~~~rhkQqSmiLVpM~TpGvkiiRpltVfG~~DapgGH~Ei~F~~VrVP~~NmlLGeGrGFEIaQGRLGPGRiHHcM 249 (392)
T KOG1469|consen 170 DNTSASRHKQQSMILVPMNTPGVKIIRPLTVFGYTDAPGGHFEIHFENVRVPATNMLLGEGRGFEIAQGRLGPGRIHHCM 249 (392)
T ss_pred CCCccchhhcccEEEEecCCCCeeEeeeeeeeccccCCCCcceEEEEEEEeeccceeecCCCcceeeccccCCcHHHHHH
Confidence 654 4689999999999999999888888877644 5899999999999876 7789999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--CChhHHHHHHHHHHHH
Q 022503 151 QTIGISIGVYDMCYRYLMERKQFGAPLAAFQITQQKLAQMLGNIQAMNLVGWRLCRMCENGK--MSLGQASLGKAWVSAR 228 (296)
Q Consensus 151 ~~~G~~~~~l~~~~~~~~~r~~~~~~~~~~~~~q~~l~~~~~~~~a~~~~~~~~~~~~d~~~--~~~~~~~~~K~~a~~~ 228 (296)
-.+|.++++++.+.+.+..|..||+++.++..+.+.|++...++|.+|.++.++++.+|... .....++|.|+.+...
T Consensus 250 RliG~aERal~lm~~R~~sRiaFgk~l~q~~s~~~diA~sRveiEqaRLLvLkAAh~mD~~G~k~Ak~~iAMiKv~AP~m 329 (392)
T KOG1469|consen 250 RLIGLAERALQLMKERALSRIAFGKKLVQHGSVAHDIAESRVEIEQARLLVLKAAHSMDTLGNKGAKKEIAMIKVAAPNM 329 (392)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHhcchhhhcchHHHHHHHHHhHhhhhhhhhhhhhhhhhhhcchhhhhheeeeeecCcHH
Confidence 99999999999999999999999999999999999999999999999999999999999753 3345788999999999
Q ss_pred HHHHHHHHHHHhCCCCCcCcChHHHHhhhcCCcccccchHHHHHHHHHHHHhcC
Q 022503 229 ARETVALGRELLGGNGIVTDFLVGKAFCDFEPFHTGEGSYDINNLIAAREITGF 282 (296)
Q Consensus 229 a~~~~~~~~~~~G~~g~~~~~~l~r~~rd~~~~~~~~g~~~~~~~~~~~~~l~~ 282 (296)
+..+++.++|.+||.|...++++.++|-.+++..+..|+.++++..+++.-+..
T Consensus 330 a~kilD~AiQ~~G~aG~s~~~~la~l~~~~r~lriadgPd~vhL~ai~~le~~~ 383 (392)
T KOG1469|consen 330 ASKILDRAIQVQGGAGVSSDTPLANLYAIARVLRIADGPDEVHLSAIAKLELRD 383 (392)
T ss_pred HHHHHHHHHHHhcCCCCCCCceeeEEEEEeeeEEeccCCCccchhhhhhhhHHH
Confidence 999999999999999999999999999999999999999999999998876543
No 39
>cd01159 NcnH Naphthocyclinone hydroxylase. Naphthocyclinone is an aromatic polyketide and an antibiotic, which is active against Gram-positive bacteria. Polyketides are secondary metabolites, which have important biological functions such as antitumor, immunosupressive or antibiotic activities. NcnH is a hydroxylase involved in the biosynthesis of naphthocyclinone and possibly other polyketides.
Probab=100.00 E-value=2.2e-43 Score=318.22 Aligned_cols=264 Identities=19% Similarity=0.176 Sum_probs=227.1
Q ss_pred hhhhcCCHHHHHHHhHhhhccccceeEEecCCCCCCCcCCCeeEEEEECCEEEEEeEEEeecCCCCCCEEEEEEEeCCC-
Q 022503 3 TIATSGSEAQKRKYLPSLAQLTTMASWALTEPNHGSDASALSTAATKVEGGWILEGQKRWIGNSTFADVLVVMARNTTT- 81 (296)
Q Consensus 3 ~l~~~g~~~q~~~~l~~i~~g~~~~~~a~te~~~gs~~~~~~~~a~~~~~g~~l~G~K~~vt~~~~a~~~lv~a~~~~~- 81 (296)
.+..+++++|++.|++.. .+ ..+ | ...+.++|++++|||+|||.|.|+|++..+|+++|.++++++
T Consensus 82 ~~~~~~~~~~~~~~~~~~-~~--~~~--------g--~~~~~t~A~~~~~gy~lnG~K~~it~~~~ad~~~v~a~~~~~~ 148 (370)
T cd01159 82 MLAAFPPEAQEEVWGDGP-DT--LLA--------G--SYAPGGRAERVDGGYRVSGTWPFASGCDHADWILVGAIVEDDD 148 (370)
T ss_pred HHHhCCHHHHHHHhCCCC-Cc--eEE--------e--eecCCceeEEeCCeEEEeccccCccCCCcCceeEeeeECCCCC
Confidence 355678888988887642 11 111 1 124567899999999999999999999999999999997532
Q ss_pred --CCeEEEEEeCCCCCeEEeecccccccccccccceEeeeeeeCCCCCCCCCC-------ChH---HhhhhhhHHHHHHH
Q 022503 82 --KKINAFIVKKDAPGLTATKIENKIGLRMLQNGDILFKKVFVPDEDRLPGFN-------SFQ---DTNIPLSVARVMVA 149 (296)
Q Consensus 82 --~~~~~flv~~~~~Gv~~~~~~~~~g~~~~~~~~~~f~~v~Vp~~~~l~~~~-------~~~---~~~~~~~~~r~~~a 149 (296)
.++++|+||++ ||++.+.|+.+||+++++++++|+||+||++++|+..+ ++. .....+..+++.++
T Consensus 149 ~~~~~~~~lV~~~--Gv~~~~~~~~~G~r~~~s~~v~f~~v~Vp~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~a 226 (370)
T cd01159 149 GGPLPRAFVVPRA--EYEIVDTWHVVGLRGTGSNTVVVDDVFVPEHRTLTAGDMMAGDGPGGSTPVYRMPLRQVFPLSFA 226 (370)
T ss_pred CCCcceEEEEEhH--HCEEecccccccccccCCCcEEEcceEcCccceecccccccCCCCCCCCccccCchHHHHHHHHH
Confidence 46899999987 99999999999999999999999999999999997532 211 22345667889999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhh---CcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-----C---hhHH
Q 022503 150 WQTIGISIGVYDMCYRYLMERKQF---GAPLAAFQITQQKLAQMLGNIQAMNLVGWRLCRMCENGKM-----S---LGQA 218 (296)
Q Consensus 150 a~~~G~~~~~l~~~~~~~~~r~~~---~~~~~~~~~~q~~l~~~~~~~~a~~~~~~~~~~~~d~~~~-----~---~~~~ 218 (296)
++++|+++++++.+.+|+++|.+| |+|++++|.+|+++++|.+.+++++++++++++.+|++.. . ...+
T Consensus 227 a~~lG~a~~~l~~~~~~~~~R~~~~~~g~~i~~~~~v~~~la~~~~~l~~a~~~~~~aa~~~~~~~~~~~~~~~~~~~~~ 306 (370)
T cd01159 227 AVSLGAAEGALAEFLELAGKRVRQYGAAVKMAEAPITQLRLAEAAAELDAARAFLERATRDLWAHALAGGPIDVEERARI 306 (370)
T ss_pred HHHHHHHHHHHHHHHHHhccCcccCCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHH
Confidence 999999999999999999999987 6889999999999999999999999999999998876411 1 2357
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCcCcChHHHHhhhcCCcccccchH-HHHHHHHHHHHhc
Q 022503 219 SLGKAWVSARARETVALGRELLGGNGIVTDFLVGKAFCDFEPFHTGEGSY-DINNLIAAREITG 281 (296)
Q Consensus 219 ~~~K~~a~~~a~~~~~~~~~~~G~~g~~~~~~l~r~~rd~~~~~~~~g~~-~~~~~~~~~~~l~ 281 (296)
+++|+++++.+.++++.+++++|+.||.++++++|+|||+++..+++|++ ++++..++|.+||
T Consensus 307 ~~aK~~~~e~~~~~~~~a~~~~Gg~g~~~~~~l~r~~Rd~~~~~~~~~~~~~~~~~~~~~~~l~ 370 (370)
T cd01159 307 RRDAAYAAKLSAEAVDRLFHAAGGSALYTASPLQRIWRDIHAAAQHAALNPETAAEAYGRALLG 370 (370)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCchhcccCCcHHHHHHHHHHHhhhhccCcchHHHHHHHHhcC
Confidence 88999999999999999999999999999999999999999999999999 9999999999986
No 40
>PTZ00457 acyl-CoA dehydrogenase; Provisional
Probab=100.00 E-value=1.2e-40 Score=306.01 Aligned_cols=235 Identities=25% Similarity=0.297 Sum_probs=214.4
Q ss_pred hhhhcCCHHHHHHHhHhhhccccceeEEecCCCCCCCcCCCeeEEEEE-CCEEEEEeEEEeecCCCCCCEEEEEEEeCC-
Q 022503 3 TIATSGSEAQKRKYLPSLAQLTTMASWALTEPNHGSDASALSTAATKV-EGGWILEGQKRWIGNSTFADVLVVMARNTT- 80 (296)
Q Consensus 3 ~l~~~g~~~q~~~~l~~i~~g~~~~~~a~te~~~gs~~~~~~~~a~~~-~~g~~l~G~K~~vt~~~~a~~~lv~a~~~~- 80 (296)
+|..+|+++||++|||++++|+.+++++++| +.|||...+.|+++++ +|+|+|||.|.|+ ++..||+++|++++++
T Consensus 112 ~L~~~Gt~eqker~Lp~lasGe~i~A~AltE-~aGSD~a~i~TtA~~~~gg~wvLNG~K~~t-~g~~Ad~~lV~Art~~~ 189 (520)
T PTZ00457 112 LLSTVGSKELKGKYLTAMSDGTIMMGWATEE-GCGSDISMNTTKASLTDDGSYVLTGQKRCE-FAASATHFLVLAKTLTQ 189 (520)
T ss_pred HHHHhCCHHHHHHHHHHHhCCCcEEEEEeCC-CCCCccccceeEEEEcCCCeEEEEEEEEEE-cCchhcEEEEEeecCCc
Confidence 5667999999999999999999999999988 8899999999999986 5579999999965 8999999999999742
Q ss_pred ---------CCCeEEEEEeCCCCCeEEeecccccccccccccceEeeeeeeCCCCCCCCC-CChHHhhhhhhHHHHHHHH
Q 022503 81 ---------TKKINAFIVKKDAPGLTATKIENKIGLRMLQNGDILFKKVFVPDEDRLPGF-NSFQDTNIPLSVARVMVAW 150 (296)
Q Consensus 81 ---------~~~~~~flv~~~~~Gv~~~~~~~~~g~~~~~~~~~~f~~v~Vp~~~~l~~~-~~~~~~~~~~~~~r~~~aa 150 (296)
.+++++|+||.+.|||++.. ++++|||| |.+++||.. +|++.....+..+|+.+++
T Consensus 190 ~~~~~g~~~~~git~FlV~~dapGVtv~~------------~eV~FddV--P~~~vLG~~g~G~~~a~~~L~~~Rl~~aA 255 (520)
T PTZ00457 190 TAAEEGATEVSRNSFFICAKDAKGVSVNG------------DSVVFENT--PAADVVGVVGEGFKDAMITLFTEQYLYAA 255 (520)
T ss_pred ccccccccCcCceEEEEEECCCCceEEec------------CEEEECCC--CHHHhCCCCCchHHHHHHHHHHHHHHHHH
Confidence 13689999999999999963 59999997 999999876 7888888999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCChhHHHHHHHHHH---
Q 022503 151 QTIGISIGVYDMCYRYLMERKQFGAPLAAFQITQQKLAQMLGNIQAMNLVGWRLCRMCENG-KMSLGQASLGKAWVS--- 226 (296)
Q Consensus 151 ~~~G~~~~~l~~~~~~~~~r~~~~~~~~~~~~~q~~l~~~~~~~~a~~~~~~~~~~~~d~~-~~~~~~~~~~K~~a~--- 226 (296)
.++|+++++++.+++|++ +|.+|+++++|.++++++|+++|++++.+|.+ .+...+++++|+|++
T Consensus 256 ~~vGia~~ale~av~ya~-----------~QaVq~~LAdma~~ieAarsl~y~AA~~~D~g~~d~~~eAa~ak~~~s~~~ 324 (520)
T PTZ00457 256 SLLGIMKRVVQELRGSNA-----------EEGATDTVASFACAMYAMESTLYALTANLDLPTEDSLLECTLVSAFVQSTT 324 (520)
T ss_pred HHHHHHHHHHHHHHHHHH-----------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHhhhhH
Confidence 999999999999999986 37899999999999999999999999999997 456889999999999
Q ss_pred HHHHHHHHHHHHHhCCCCCcCcChHHHHhhhcCCcccccchHHHHH
Q 022503 227 ARARETVALGRELLGGNGIVTDFLVGKAFCDFEPFHTGEGSYDINN 272 (296)
Q Consensus 227 ~~a~~~~~~~~~~~G~~g~~~~~~l~r~~rd~~~~~~~~g~~~~~~ 272 (296)
+.++++++.++| +++|+||++||++.+.+++|++++++
T Consensus 325 e~~~~~~~~~~~--------~~~~~E~~~rd~ri~~i~egs~~~l~ 362 (520)
T PTZ00457 325 NQLLSILETATP--------PSTTLEKCFANARLFLSMMESRDFLY 362 (520)
T ss_pred HHHHHHhhhhcc--------CCccHHHHHHHHHHHHHhhhHHHHHH
Confidence 888888888877 89999999999999999999999998
No 41
>KOG0135 consensus Pristanoyl-CoA/acyl-CoA oxidase [Lipid transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=7.3e-33 Score=245.08 Aligned_cols=279 Identities=25% Similarity=0.366 Sum_probs=243.9
Q ss_pred hhhhcCCHHHHHHHhHhhhccccceeEEecCCCCCCCcCCCeeEEEEE--CCEEEEE-----eEEEeecC-CCCCCEEEE
Q 022503 3 TIATSGSEAQKRKYLPSLAQLTTMASWALTEPNHGSDASALSTAATKV--EGGWILE-----GQKRWIGN-STFADVLVV 74 (296)
Q Consensus 3 ~l~~~g~~~q~~~~l~~i~~g~~~~~~a~te~~~gs~~~~~~~~a~~~--~~g~~l~-----G~K~~vt~-~~~a~~~lv 74 (296)
++..+||+.-++ |+..+-.-+..+|||+||-++|||...++|+|+.| .+.|+|| ..|.||.| +.+|++.+|
T Consensus 135 AV~~~GT~rH~~-yi~~~~n~ev~gcfamTEl~HGSNt~~I~TtatyDP~t~EfVinTP~~~A~K~WiGn~a~~athavv 213 (661)
T KOG0135|consen 135 AVKSMGTKRHHD-YIQKTENYEVKGCFAMTELGHGSNTKGIQTTATYDPTTEEFVINTPDFSAIKCWIGNAAKHATHAVV 213 (661)
T ss_pred HHHhhccHHHHH-HHhhhhcceeeeeEEEeeecCCccccceeeeeeecCCCCeeEecCCcHHHHHHHhccccccceEEEE
Confidence 467789977777 99999999999999999999999999999999998 6789999 77999999 588999999
Q ss_pred EEEe--C-CCCCeEEEEEeCC-------CCCeEEeecccccccccccccceEeeeeeeCCCCCCCC-----CCC------
Q 022503 75 MARN--T-TTKKINAFIVKKD-------APGLTATKIENKIGLRMLQNGDILFKKVFVPDEDRLPG-----FNS------ 133 (296)
Q Consensus 75 ~a~~--~-~~~~~~~flv~~~-------~~Gv~~~~~~~~~g~~~~~~~~~~f~~v~Vp~~~~l~~-----~~~------ 133 (296)
+++. + .+.|++.|+|+.. -|||.|.++..+.|++|.+++.+.|+||+||.+++|-. ++|
T Consensus 214 fa~L~~~g~n~G~H~FiiqIRdpkT~~t~PgV~igD~G~K~GlnGVDNG~l~F~nvRIPRenLLNr~gDVtpDG~YvSs~ 293 (661)
T KOG0135|consen 214 FAQLHVPGQNHGLHGFIIQIRDPKTLQTLPGVRIGDCGHKIGLNGVDNGFLWFDNVRIPRENLLNRFGDVTPDGKYVSSF 293 (661)
T ss_pred EEEeeecCccCceeeEEEEeecccccCCCCCceecccccccccccccCceEEEecccCchHHHhhhccCcCCCCeeeccC
Confidence 9996 2 3468999999953 58999999999999999999999999999999999932 111
Q ss_pred ------hHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhCc-------ccccchhHHHHHHHHHHHHHHHHHH
Q 022503 134 ------FQDTNIPLSVARVMVAWQTIGISIGVYDMCYRYLMERKQFGA-------PLAAFQITQQKLAQMLGNIQAMNLV 200 (296)
Q Consensus 134 ------~~~~~~~~~~~r~~~aa~~~G~~~~~l~~~~~~~~~r~~~~~-------~~~~~~~~q~~l~~~~~~~~a~~~~ 200 (296)
+......+..+|+.++..++|.++-++..+++|+-.|+|||. ||.++|..|+||-.+++...+....
T Consensus 294 k~~~qrfgA~L~~Ls~GRvgIa~~ai~~lkla~tIAIRYS~sRRQFGP~~~geEv~iLeYp~qQ~RL~P~LAaaya~~fa 373 (661)
T KOG0135|consen 294 KDPSQRFGASLGSLSSGRVGIASSAIGALKLALTIAIRYSLSRRQFGPTKNGEEVPILEYPSQQYRLLPYLAAAYALSFA 373 (661)
T ss_pred CChhhhhchhhcccccchhHHHHHHHHHHHHHHHHhhhhHHhHhhhCCCCCCCcceeeechhHHHHHHHHHHHHHHHHHH
Confidence 123445567889999999999999999999999999999974 5789999999999999999998877
Q ss_pred HHHHHHHHHcC----------CCChhHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcCcChHHHHhhhcCCcccccchHHH
Q 022503 201 GWRLCRMCENG----------KMSLGQASLGKAWVSARARETVALGRELLGGNGIVTDFLVGKAFCDFEPFHTGEGSYDI 270 (296)
Q Consensus 201 ~~~~~~~~d~~----------~~~~~~~~~~K~~a~~~a~~~~~~~~~~~G~~g~~~~~~l~r~~rd~~~~~~~~g~~~~ 270 (296)
.......+.+. .+....++-.|-+++....+..++|.+.|||+||..+|.+..+-.|--.+.+++|+|.+
T Consensus 374 s~~l~~~y~E~~~~~~~~~n~keiHALsSg~K~~~TW~~~~~LqecREAcGGhGYl~~nRlg~Lr~D~D~~~TfEGDNnV 453 (661)
T KOG0135|consen 374 SKYLVMIYVERTPRTNEGVNSKEIHALSSGLKPVATWHNMRALQECREACGGHGYLQENRLGQLRDDHDPFQTFEGDNNV 453 (661)
T ss_pred HHHHHHHHHHHhhhhccccchhHHHHHHhccchhhhHhhHHHHHHHHHHhccchHHHHHHhcccccCCCccceeecCcee
Confidence 66666555441 12344677899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcC
Q 022503 271 NNLIAAREITGF 282 (296)
Q Consensus 271 ~~~~~~~~~l~~ 282 (296)
+..+.++.+|+.
T Consensus 454 LlQqvsn~LL~~ 465 (661)
T KOG0135|consen 454 LLQQVSNALLAQ 465 (661)
T ss_pred HHHHHHHHHHHH
Confidence 999999998876
No 42
>TIGR02309 HpaB-1 4-hydroxyphenylacetate 3-monooxygenase, oxygenase component. This gene for this monooxygenase is found within apparent operons for the degradation of 4-hydroxyphenylacetic acid in Deinococcus, Thermus and Oceanobacillus. Phylogenetic trees support inclusion of the Bacillus halodurans sequence above trusted although the complete 4-hydroxyphenylacetic acid degradation pathway may not exist in that organism. Generally, this enzyme acts with the assistance of a small flavin reductase domain protein (HpaC) to provide the cycle the flavin reductant for the reaction. This family of sequences is a member of a larger subfamily of monooxygenases (pfam03241).
Probab=99.96 E-value=4.2e-28 Score=222.43 Aligned_cols=228 Identities=21% Similarity=0.220 Sum_probs=190.9
Q ss_pred HHHHHhHhhhccccceeEEecCCCCC-C-------CcCCCeeEEEEECCEEEEEeEEEeecCCCCCCEEEEEEEeCCC--
Q 022503 12 QKRKYLPSLAQLTTMASWALTEPNHG-S-------DASALSTAATKVEGGWILEGQKRWIGNSTFADVLVVMARNTTT-- 81 (296)
Q Consensus 12 q~~~~l~~i~~g~~~~~~a~te~~~g-s-------~~~~~~~~a~~~~~g~~l~G~K~~vt~~~~a~~~lv~a~~~~~-- 81 (296)
-...|+..+.+.++..+.++++|... | |..-..-..++++|||+|||.|.|+|++ .||+++|+++++..
T Consensus 128 n~~~y~~~~~~~dl~~~~a~~dp~~dRs~~~~~~~d~~~~~~Vve~~~dGiVV~GaK~~~T~~-~ad~~~V~~~~~~~~~ 206 (477)
T TIGR02309 128 NVRNYYEYLRDNDLALTHALTNPQVNRAKPPSEQPDPYIALGVVEQTDKGVIVRGARMTATFP-IADEILIFPSTVLKAG 206 (477)
T ss_pred HHHHHHHHHHHhCceeeccccCCCCCCCCChhhcCCCCcceeEEEEcCCCEEEeCHHHhhhhc-ccceEEEeccCCCCCc
Confidence 45679999999999999999998542 1 1111123455688999999999999996 99999999997532
Q ss_pred --CC--eEEEEEeCCCCCeEEeecccccccccc-----------cccceEeeeeeeCCCCC--CCCC---C-ChHHhhhh
Q 022503 82 --KK--INAFIVKKDAPGLTATKIENKIGLRML-----------QNGDILFKKVFVPDEDR--LPGF---N-SFQDTNIP 140 (296)
Q Consensus 82 --~~--~~~flv~~~~~Gv~~~~~~~~~g~~~~-----------~~~~~~f~~v~Vp~~~~--l~~~---~-~~~~~~~~ 140 (296)
++ .++|+||.++||+++....+++|.++. ..+.++||||+||++++ +|.. + ++...
T Consensus 207 ~~~~~ya~~F~VP~dtpGl~~i~r~~~~~~~~~~D~plssrfde~da~vvFDdV~VPwe~VF~~g~~e~a~~~f~~~--- 283 (477)
T TIGR02309 207 AEKDPYALAFAIPTNTPGLHFVCREALDGGDSPFDHPLSSRFEEMDALVIFDDVLVPWERIFILGDVELCNNAYAAT--- 283 (477)
T ss_pred cCCCCeEEEEEeeCCCCceEEEeCCccCCCCCcccCccccccCCCeEEEEeCceeccHHHhhhcCCHHHHHHHHHHH---
Confidence 22 688999999999999999888888876 66899999999999999 6654 2 12111
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-----CCh
Q 022503 141 LSVARVMVAWQTIGISIGVYDMCYRYLMERKQFGAPLAAFQITQQKLAQMLGNIQAMNLVGWRLCRMCENGK-----MSL 215 (296)
Q Consensus 141 ~~~~r~~~aa~~~G~~~~~l~~~~~~~~~r~~~~~~~~~~~~~q~~l~~~~~~~~a~~~~~~~~~~~~d~~~-----~~~ 215 (296)
..+...+.+++|.+.+++|.++.|+.. ..|+.++.++|++|++|++|.+.+|++++++++++...+.+. +..
T Consensus 284 --~~~~~~~~~~~g~~~~~ld~~~g~a~~-~a~~~gi~~~q~VQ~kLAEm~~~~Ea~ral~~aAa~~~~~~~~G~~~P~~ 360 (477)
T TIGR02309 284 --GAVNHMAHQVVALKIAKTEAFLGVAAL-MAEGIGADGFQHVQEKIAEIIVYLEAMKAFWTRAEEEAKENAYGLMTPDR 360 (477)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhCcccchHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCCCcccCCH
Confidence 123566889999999999999999999 899999999999999999999999999999999999888742 457
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcC
Q 022503 216 GQASLGKAWVSARARETVALGRELLGGNGIVT 247 (296)
Q Consensus 216 ~~~~~~K~~a~~~a~~~~~~~~~~~G~~g~~~ 247 (296)
..++++|+++++...++. .++|++||.|+..
T Consensus 361 ~~as~aKl~~~e~~~rv~-~alq~lGG~G~~~ 391 (477)
T TIGR02309 361 GALDAARNLYPRLYPRLR-EILEQLGASGLIT 391 (477)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHhCCcEEe
Confidence 789999999999999995 9999999999874
No 43
>KOG0136 consensus Acyl-CoA oxidase [Lipid transport and metabolism]
Probab=99.96 E-value=6.5e-29 Score=224.71 Aligned_cols=281 Identities=23% Similarity=0.269 Sum_probs=237.1
Q ss_pred hhhhhcCCHHHHHHHhHhhhccccceeEEecCCCCCCCcCCCeeEEEEECC--EEEEE-----eEEEeecC-CCCCCEEE
Q 022503 2 LTIATSGSEAQKRKYLPSLAQLTTMASWALTEPNHGSDASALSTAATKVEG--GWILE-----GQKRWIGN-STFADVLV 73 (296)
Q Consensus 2 ~~l~~~g~~~q~~~~l~~i~~g~~~~~~a~te~~~gs~~~~~~~~a~~~~~--g~~l~-----G~K~~vt~-~~~a~~~l 73 (296)
.+|..-||+||.++||+.--..++++|+|.||-++|++...++|+|+.+.. .|+|| ..|||..+ +..++|.+
T Consensus 120 p~l~~q~t~EQ~~~Wl~~a~~~~IiGtYAQTElGHGTnl~~LET~AtyD~~T~eFVl~TPt~ta~KWWPGgLG~ssnhAv 199 (670)
T KOG0136|consen 120 PTLKGQGTDEQQEKWLSRALNMEIIGTYAQTELGHGTNLRGLETTATYDPKTQEFVLNTPTLTATKWWPGGLGKSSNHAV 199 (670)
T ss_pred hHhhcCCCHHHHHHHHHhcccceEEEeehhhhhcccccccccceeeeecCCcceEEecCCCcceecccCCccccccchhe
Confidence 567778999999999999999999999999999999999999999999764 59998 89999998 67788999
Q ss_pred EEEEeC---CCCCeEEEEEeCC-------CCCeEEeecccccccccccccceEeeeeeeCCCCCCCCC-----CCh----
Q 022503 74 VMARNT---TTKKINAFIVKKD-------APGLTATKIENKIGLRMLQNGDILFKKVFVPDEDRLPGF-----NSF---- 134 (296)
Q Consensus 74 v~a~~~---~~~~~~~flv~~~-------~~Gv~~~~~~~~~g~~~~~~~~~~f~~v~Vp~~~~l~~~-----~~~---- 134 (296)
|.|+.- ...|++.|+||.. .|||++.+..+++|..+.+++-+-||||+||.+++|... +|.
T Consensus 200 V~AqL~~~gk~~G~h~FiV~lRd~~th~pL~Gi~iGDIG~Kmg~ng~dNGfL~f~nvRIPR~nmLmr~~kV~~dGtyv~p 279 (670)
T KOG0136|consen 200 VVAQLITKGKCYGPHPFIVQLRDEDTHKPLPGITVGDIGPKMGFNGVDNGFLGFDNVRIPRTNMLMRHAKVEPDGTYVKP 279 (670)
T ss_pred eeeeeeecccccccceeEEEccCccccCCCCCCeecCCCccccccCCccceeeecceeechHhhhhhhheecCCCccccC
Confidence 999962 2358999999964 679999999999999999999999999999999999541 221
Q ss_pred ---HHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhC-------cccccchhHHHHHHHHHHHHHHHHHHHHHH
Q 022503 135 ---QDTNIPLSVARVMVAWQTIGISIGVYDMCYRYLMERKQFG-------APLAAFQITQQKLAQMLGNIQAMNLVGWRL 204 (296)
Q Consensus 135 ---~~~~~~~~~~r~~~aa~~~G~~~~~l~~~~~~~~~r~~~~-------~~~~~~~~~q~~l~~~~~~~~a~~~~~~~~ 204 (296)
......+-+.|..+..-..-....|...+++|+..|+|+. ..|.|+|..|++|-...+..++.+......
T Consensus 280 ~~~~l~Y~tMv~vRs~mv~d~a~~La~A~tIAtRYSaVRRQ~~i~pg~~E~qIlDyqTQQ~rlFP~LA~ayAf~~~g~~l 359 (670)
T KOG0136|consen 280 PHPKLGYGTMVYVRSLMVMDQARFLAKAATIATRYSAVRRQSEIRPGQPEVQILDYQTQQYRLFPQLARAYAFRFVGEEL 359 (670)
T ss_pred CccccceeeeEEEeehhHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCceeeechhHHHHHhHHHHHHHHHHHHHHHH
Confidence 2222333345666666667777888899999999999973 248899999999999999988887655444
Q ss_pred HHH-------HHcCC-----CChhHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcCcChHHHHhhhcCCcccccchHHHHH
Q 022503 205 CRM-------CENGK-----MSLGQASLGKAWVSARARETVALGRELLGGNGIVTDFLVGKAFCDFEPFHTGEGSYDINN 272 (296)
Q Consensus 205 ~~~-------~d~~~-----~~~~~~~~~K~~a~~~a~~~~~~~~~~~G~~g~~~~~~l~r~~rd~~~~~~~~g~~~~~~ 272 (296)
.+. ++++. +....++-.|..++..+.+-++.|...|||+||+.-+.+..++-..-..-+++|.|.++.
T Consensus 360 ~~~Y~~~~~~l~~g~~s~LpeLHaLS~gLKa~~T~~~~~GIE~~R~aCGGHGYs~~Sglp~iY~~~v~~CTYEGEN~Vml 439 (670)
T KOG0136|consen 360 WELYEDVLKELENGNFSRLPELHALSAGLKAVVTWDTAQGIEQCRLACGGHGYSQASGLPEIYGVAVGACTYEGENTVLL 439 (670)
T ss_pred HHHHHHHHHHHhcCChhhchHHHHHHhhhHHHhhhhhhhHHHHHHHhcCCccchhhcCCccceeeeeeeeeeeccceeeh
Confidence 443 33332 334567789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcC
Q 022503 273 LIAAREITGF 282 (296)
Q Consensus 273 ~~~~~~~l~~ 282 (296)
.++||.+++.
T Consensus 440 LQ~ARfLmKs 449 (670)
T KOG0136|consen 440 LQVARFLVKS 449 (670)
T ss_pred HHHHHHHHHH
Confidence 9999988764
No 44
>PF00441 Acyl-CoA_dh_1: Acyl-CoA dehydrogenase, C-terminal domain; InterPro: IPR006090 Mammalian Co-A dehydrogenases (1.3.99.3 from EC) are enzymes that catalyse the first step in each cycle of beta-oxidation in mitochondion. Acyl-CoA dehydrogenases [, , ] catalyze the alpha,beta-dehydrogenation of acyl-CoA thioesters to the corresponding trans 2,3-enoyl CoA-products with concommitant reduction of enzyme-bound FAD. Reoxidation of the flavin involves transfer of electrons to ETF (electron transfering flavoprotein). These enzymes are homodimers containing one molecule of FAD. The monomeric enzyme is folded into three domains of approximately equal size. The N-terminal and the C-terminal are mainly alpha-helices packed together, and the middle domain consists of two orthogonal beta-sheets. The flavin ring is buried in the crevise between two alpha-helical domains and the beta-sheet of one subunit, and the adenosine pyrophosphate moiety is stretched into the subunit junction with one formed by two C-terminal domains []. The C-terminal domain of Acyl-CoA dehydrogenase is an all-alpha, four helical up-and-down bundle.; GO: 0016627 oxidoreductase activity, acting on the CH-CH group of donors, 0055114 oxidation-reduction process; PDB: 2EBA_A 1RX0_C 1R2J_A 2OKU_A 3MKH_C 2JIF_C 3GQT_D 3EON_D 3EOM_C 3D6B_A ....
Probab=99.93 E-value=1.1e-24 Score=171.52 Aligned_cols=149 Identities=25% Similarity=0.399 Sum_probs=144.8
Q ss_pred CChHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 022503 132 NSFQDTNIPLSVARVMVAWQTIGISIGVYDMCYRYLMERKQFGAPLAAFQITQQKLAQMLGNIQAMNLVGWRLCRMCENG 211 (296)
Q Consensus 132 ~~~~~~~~~~~~~r~~~aa~~~G~~~~~l~~~~~~~~~r~~~~~~~~~~~~~q~~l~~~~~~~~a~~~~~~~~~~~~d~~ 211 (296)
+|+..+...+..+|+..++.++|.++.+++.+.+|++.|.+||+|+.++|.++++++++..++++++++++++...++.+
T Consensus 2 ~G~~~~~~~l~~~R~~~~~~~~g~~~~~l~~a~~~~~~r~~~g~~l~~~~~v~~~la~~~~~~~a~~~~~~~~~~~~~~~ 81 (150)
T PF00441_consen 2 QGWAVALDTLNHERLMIAAMALGIARRALDEAIEYARRRRQFGKPLAEHPAVRRRLADMAARLEAMRALVYRAARRLDAG 81 (150)
T ss_dssp BHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTEETTEEGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccchhhhHHHHHhhccchhhhhccccccccccccc
Confidence 57888899999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcCcChHHHHhhhcCCcccccchHHHHHHHHHHHHh
Q 022503 212 KMSLGQASLGKAWVSARARETVALGRELLGGNGIVTDFLVGKAFCDFEPFHTGEGSYDINNLIAAREIT 280 (296)
Q Consensus 212 ~~~~~~~~~~K~~a~~~a~~~~~~~~~~~G~~g~~~~~~l~r~~rd~~~~~~~~g~~~~~~~~~~~~~l 280 (296)
......++++|+++++.+.++++.+++++|+.||.+++++++++||++.+.+++|++++++..+++.+|
T Consensus 82 ~~~~~~~a~~K~~~t~~~~~~~~~~~~l~G~~g~~~~~~l~~~~rda~~~~i~~G~~ev~~~~ia~~~l 150 (150)
T PF00441_consen 82 QNDPVEAAIAKYFATELAQDIAEEAMQLLGGRGLTEDNPLERLYRDARAFTIYGGTNEVQRNQIARRLL 150 (150)
T ss_dssp SSTHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGGBTTSSHHHHHHHHHHGGTSTSTHHHHHHHHHHHHH
T ss_pred cccccccchhhhhcccccccchhhhhhhhhhhhhcccCHHHHHHhhcceeeeccCCHHHHHHHHHHHhC
Confidence 888889999999999999999999999999999999999999999999999999999999999999876
No 45
>COG2368 Aromatic ring hydroxylase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.72 E-value=1e-15 Score=135.95 Aligned_cols=231 Identities=16% Similarity=0.194 Sum_probs=168.5
Q ss_pred HHHHHhHhhhccccceeEEecCCCCCCCc-----C--CCee-EEEEECCEEEEEeEEEeecCCCCCCEEEEEEEe---CC
Q 022503 12 QKRKYLPSLAQLTTMASWALTEPNHGSDA-----S--ALST-AATKVEGGWILEGQKRWIGNSTFADVLVVMARN---TT 80 (296)
Q Consensus 12 q~~~~l~~i~~g~~~~~~a~te~~~gs~~-----~--~~~~-~a~~~~~g~~l~G~K~~vt~~~~a~~~lv~a~~---~~ 80 (296)
--..|+..+++.++..+.|+|.|-..-+. . .+-. ..+++++|.+|+|.|..+|+++.+|..+|+... ++
T Consensus 132 n~~~~~k~vqk~DL~~~hA~tdpk~dRsk~p~e~~dpdiyvrVvee~~dGIVVrGAK~~aT~~a~tdei~V~Pt~~~~~~ 211 (493)
T COG2368 132 NAREYYKEVQKNDLALTHAITDPKGDRSKRPSEQKDPDIYVRVVEETEDGIVVRGAKALATGSALTDEIFVLPTRSMQED 211 (493)
T ss_pred HHHHHHHHHHhcCceeeeceecCCccCCCChhhccCCCeeEEEEEEecCceEEEChHHHhccccccceEEEeeccccCCC
Confidence 45679999999999999999998542111 1 1222 344578999999999999999999999998432 23
Q ss_pred CCC-eEEEEEeCCCCCeEEeeccccc---ccccccc------------cceEeeeeeeCCCCCCC--CCC---ChHHhhh
Q 022503 81 TKK-INAFIVKKDAPGLTATKIENKI---GLRMLQN------------GDILFKKVFVPDEDRLP--GFN---SFQDTNI 139 (296)
Q Consensus 81 ~~~-~~~flv~~~~~Gv~~~~~~~~~---g~~~~~~------------~~~~f~~v~Vp~~~~l~--~~~---~~~~~~~ 139 (296)
++. ..+|.+|+++|||++....... |+.+.+. +-++||||+||.++|+= .+. .+.....
T Consensus 212 d~dfAv~FaiP~dt~GvK~i~r~s~~~~~~~~~g~fd~plssrfde~dailVfDdVfVPWERVf~y~d~~~~~~~~~~~~ 291 (493)
T COG2368 212 DKDFAVAFAIPMDTEGVKFICRRSYELGRGAEGGPFDYPLSSRFDENDAILVFDDVFVPWERVFIYRDLERAYAWYAVSG 291 (493)
T ss_pred CCceEEEEEcccCCCceEEEecCcchhhcccCCCCCCCccccccccCceEEEecccccchhheeeeccHHHHHHHHHHHH
Confidence 333 5669999999999997655322 1111221 34999999999999982 222 2223333
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-----CCC
Q 022503 140 PLSVARVMVAWQTIGISIGVYDMCYRYLMERKQFGAPLAAFQITQQKLAQMLGNIQAMNLVGWRLCRMCENG-----KMS 214 (296)
Q Consensus 140 ~~~~~r~~~aa~~~G~~~~~l~~~~~~~~~r~~~~~~~~~~~~~q~~l~~~~~~~~a~~~~~~~~~~~~d~~-----~~~ 214 (296)
+...+|...+.+..+...-.+-.+...++.- .+.++++||++|++|....|.+.++...++...... .++
T Consensus 292 Fa~~~~~q~~~~k~~k~d~i~G~~~~~~~~~-----Gv~~~~hIq~kl~Emi~~~e~~~al~~Aa~~~a~~~~~G~~~Pn 366 (493)
T COG2368 292 FARLHRQQAVGRKAVKLDFILGAAYLIAETN-----GVEEFRHIQEKLGEMIALLELMWALSDAAAEEAQKNPNGAWLPN 366 (493)
T ss_pred HHHHhhhhhhhhhHHHHHHHHHHHHHHHHhh-----CccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCceecC
Confidence 4445666666666666666666555555443 378999999999999999999999999888765442 366
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcC
Q 022503 215 LGQASLGKAWVSARARETVALGRELLGGNGIVT 247 (296)
Q Consensus 215 ~~~~~~~K~~a~~~a~~~~~~~~~~~G~~g~~~ 247 (296)
...++..|.++...-.++.+.+.++.||.-.+-
T Consensus 367 ~~~~n~~r~~~~~~~~~~~~~l~~i~gg~~i~l 399 (493)
T COG2368 367 PAYANVGRVYAPKAYPRIKEILQDISGGGIITL 399 (493)
T ss_pred HHHHhhHHHhcccchHHHHHHHHHHhcCceeec
Confidence 778899999999999999999999998755443
No 46
>PF08028 Acyl-CoA_dh_2: Acyl-CoA dehydrogenase, C-terminal domain; InterPro: IPR013107 Acyl Co-A dehydrogenases (1.3.99.3 from EC) are enzymes that catalyse the first step in each cycle of beta-oxidation in mitochondion. Acyl-CoA dehydrogenases [, , ] catalyze the alpha,beta-dehydrogenation of acyl-CoA thioesters to the corresponding trans 2,3-enoyl CoA-products with concommitant reduction of enzyme-bound FAD. Reoxidation of the flavin involves transfer of electrons to ETF (electron transfering flavoprotein). These enzymes are homodimers containing one molecule of FAD. The monomeric enzyme is folded into three domains of approximately equal size. The N-terminal and the C-terminal are mainly alpha-helices packed together, and the middle domain consists of two orthogonal beta-sheets. The flavin ring is buried in the crevise between two alpha-helical domains and the beta-sheet of one subunit, and the adenosine pyrophosphate moiety is stretched into the subunit junction with one formed by two C-terminal domains []. The C-terminal domain of Acyl-CoA dehydrogenase is an all-alpha, four helical up-and-down bundle.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3AFE_C 3AFF_A 2JBT_D 2JBS_C 2JBR_B 2RFQ_B 2OR0_B.
Probab=99.72 E-value=1.4e-16 Score=122.99 Aligned_cols=122 Identities=24% Similarity=0.227 Sum_probs=107.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhh--hCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH----cCCCC----h
Q 022503 146 VMVAWQTIGISIGVYDMCYRYLMERKQ--FGAPLAAFQITQQKLAQMLGNIQAMNLVGWRLCRMCE----NGKMS----L 215 (296)
Q Consensus 146 ~~~aa~~~G~~~~~l~~~~~~~~~r~~--~~~~~~~~~~~q~~l~~~~~~~~a~~~~~~~~~~~~d----~~~~~----~ 215 (296)
|.+++.++|+++++++.+.+++++|.. .+.++.+.|.+|.+++++...+++++++++++++.++ .+.+. .
T Consensus 1 L~~aa~~lG~A~~al~~~~~~~~~r~~~~~~~~~~~~p~~q~~lgea~~~~~aa~~~l~~~~~~~~~~~~~g~~~~~~~~ 80 (134)
T PF08028_consen 1 LSFAAVYLGIARGALDEFVEYLRGRVRASGGAPLADDPYIQARLGEAAARLDAARALLYRAARRLWEAADAGEELTPEER 80 (134)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSBCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT----HHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCchhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCHHHH
Confidence 467899999999999999999999988 6789999999999999999999999999999999844 44332 2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcCcChHHHHhhhcCCcccccch
Q 022503 216 GQASLGKAWVSARARETVALGRELLGGNGIVTDFLVGKAFCDFEPFHTGEGS 267 (296)
Q Consensus 216 ~~~~~~K~~a~~~a~~~~~~~~~~~G~~g~~~~~~l~r~~rd~~~~~~~~g~ 267 (296)
....+.|.++.+.+.++++.+++++|+.++.+++|++|+|||+++...|...
T Consensus 81 ~~~~~~~~~a~~~a~~av~~l~~~~G~~a~~~~~pl~R~~RD~~~~~~H~~~ 132 (134)
T PF08028_consen 81 ARLRAAKAHAARLAREAVDRLFRLAGGSALYRSSPLERIWRDVRAGAQHPAL 132 (134)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCSGGGGGBTTSHHHHHHHHHHHHTTSGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhChHhhhcCCcHHHHHHHHHHHhhCccc
Confidence 3456789999999999999999999999999999999999999998887654
No 47
>TIGR02310 HpaB-2 4-hydroxyphenylacetate 3-monooxygenase, oxygenase component. This gene for this monooxygenase is found within apparent operons for the degradation of 4-hydroxyphenylacetic acid in Shigella, Photorhabdus and Pasteurella. The family modelled by this alignment is narrowly limited to gammaproteobacteria to exclude other aromatic hydroxylases involved in various secondary metabolic pathways. Generally, this enzyme acts with the assistance of a small flavin reductase domain protein (HpaC) to provide the cycle the flavin reductant for the reaction. This family of sequences is a member of a larger subfamily of monooxygenases (pfam03241).
Probab=99.67 E-value=1e-14 Score=133.94 Aligned_cols=227 Identities=10% Similarity=0.047 Sum_probs=155.8
Q ss_pred HHHHHHhHhhhccccceeEEecCCCCCCC-----cCCCe-eEEEEECCEEEEEeEEEeecCCCCCCEEEE-EEEe---CC
Q 022503 11 AQKRKYLPSLAQLTTMASWALTEPNHGSD-----ASALS-TAATKVEGGWILEGQKRWIGNSTFADVLVV-MARN---TT 80 (296)
Q Consensus 11 ~q~~~~l~~i~~g~~~~~~a~te~~~gs~-----~~~~~-~~a~~~~~g~~l~G~K~~vt~~~~a~~~lv-~a~~---~~ 80 (296)
+-..+|+..+.+.++..+.++++|...-. ...+- -..+++++|.+|+|.|...|+++.+|.++| .... .+
T Consensus 136 ~n~~~yy~~~qenDL~~~hA~~dPk~DRsk~p~e~~D~~v~VVee~~dGIVVrGAK~~aT~a~~a~ei~V~~~~~~~~~~ 215 (519)
T TIGR02310 136 DNARNWYKRIQESCLYFNHAIVNPPIDRNKPIDQVKDVYIKIEEERDDGIVVSGAKVVATNSALTHYNFIGFGSAQIIGD 215 (519)
T ss_pred HHHHHHHHHHHHhCceeecceeCCCCCCCCccccCCCCceEEEEEcCCcEEEeCHHHHhcccchhcceeeccCcccccCC
Confidence 34677999999999999999999854211 11122 344567899999999999999999999988 4443 12
Q ss_pred CCC-eEEEEEeCCCCCeEEeeccccc----ccc-cc----------cccceEeeeeeeCCCCCCCCCC-----ChHHhhh
Q 022503 81 TKK-INAFIVKKDAPGLTATKIENKI----GLR-ML----------QNGDILFKKVFVPDEDRLPGFN-----SFQDTNI 139 (296)
Q Consensus 81 ~~~-~~~flv~~~~~Gv~~~~~~~~~----g~~-~~----------~~~~~~f~~v~Vp~~~~l~~~~-----~~~~~~~ 139 (296)
++. ...|.||.++||+++....... +.. .. .-+-+.||||+||.++|+-.++ .+.....
T Consensus 216 d~dyAvaFavP~dtpGlk~IcR~s~~~~~~~~~~~fD~PlssrfdE~Da~vVFDdVfVPWErVF~~gd~e~~~~~~~~~~ 295 (519)
T TIGR02310 216 NDDFALMFIAPMDAEGVKLICRHSYELVAGATGSPFDYPLSSRFDENDAILVMDSVFIPWENVLIYRDFERCRTWAQYGG 295 (519)
T ss_pred CCCeEEEEEeEcCCCceEEEeCCchhhccccCCCCCcCccccccCCceEEEEeCCcccchHHceecCCHHHHHhHHHhhh
Confidence 344 4569999999999998654322 000 11 1245899999999999983322 1222111
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-----CCC
Q 022503 140 PLSVARVMVAWQTIGISIGVYDMCYRYLMERKQFGAPLAAFQITQQKLAQMLGNIQAMNLVGWRLCRMCENG-----KMS 214 (296)
Q Consensus 140 ~~~~~r~~~aa~~~G~~~~~l~~~~~~~~~r~~~~~~~~~~~~~q~~l~~~~~~~~a~~~~~~~~~~~~d~~-----~~~ 214 (296)
+...+-...+.+.++.++-.+-.+..-+..- .+.+++++|++|+++....|.++++...+....... .+.
T Consensus 296 ~~~~~~~q~~~r~~~k~dfl~G~a~~~ae~~-----G~~~~~hVqekl~Eli~~~E~~~a~~~Aa~~~~~~~~~G~~~P~ 370 (519)
T TIGR02310 296 FARLFPMQACTRLAVKLDFITGLLHKALQCT-----GVLEFRGVQAQMGEVVAWRNLFWTLTDAMAGSAYQWKNGAQLPS 370 (519)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----CcccchHHHHHHHHHHHHHHHHHHHHHHHHhcCccCCCCeEeeC
Confidence 2221111222244555554444444444432 367899999999999999999999998887754432 255
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 022503 215 LGQASLGKAWVSARARETVALGRELLGG 242 (296)
Q Consensus 215 ~~~~~~~K~~a~~~a~~~~~~~~~~~G~ 242 (296)
......+|.++.+.-.++.+.+.+++||
T Consensus 371 ~~~~~a~r~~~~~~y~r~~eil~~~~ag 398 (519)
T TIGR02310 371 AQALQTYRVMAPMAYHTIKKIIEQTVTS 398 (519)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHccC
Confidence 6678899999999999999999866654
No 48
>PF02770 Acyl-CoA_dh_M: Acyl-CoA dehydrogenase, middle domain; InterPro: IPR006091 Acyl-CoA dehydrogenases (1.3.99.3 from EC) are a family of flavoproteins that catalyse the alpha,beta-dehydrogenation of acyl-CoA thioesters to the corresponding trans 2,3-enoyl CoA-products with the concomitant reduction of enzyme-bound FAD. Different family members share a high sequence identity, catalytic mechanisms, and structural properties, but differ in the position of their catalytic bases and in their substrate binding specificity. Butyryl-CoA dehydrogenase [] prefers short chain substrates, medium chain- and long-chain acyl-CoA dehydrogenases prefer medium and long chain substrates, respectively, and Isovaleryl-CoA dehydrogenase [] prefers branched-chain substrates. The monomeric enzyme is folded into three domains of approximately equal size, where the N-terminal domain is all-alpha, the middle domain is an open (5,8) barrel, and the C-terminal domain is a four-helical bundle. The constituent families differ in the numbers of C-terminal domains. This entry represents the middle beta-barrel domain found in medium chain acyl-CoA dehydrogenases, as well as in the related peroxisomal acyl-CoA oxidase-II enzymes. Acyl-CoA oxidase (ACO; 1.3.3.6 from EC) catalyzes the first and rate-determining step of the peroxisomal beta-oxidation of fatty acids [].; GO: 0003995 acyl-CoA dehydrogenase activity, 0055114 oxidation-reduction process; PDB: 3MDD_B 1UDY_C 3MDE_B 2UXW_A 3B96_A 1SIQ_A 1SIR_A 2R0N_A 2R0M_A 2D29_B ....
Probab=99.65 E-value=6.8e-16 Score=98.26 Aligned_cols=52 Identities=42% Similarity=0.705 Sum_probs=47.1
Q ss_pred eEEecCCCCCCCcCCCeeEEEEECCEEEEEeEEEeecCCCCCCEEEEEEEeC
Q 022503 28 SWALTEPNHGSDASALSTAATKVEGGWILEGQKRWIGNSTFADVLVVMARNT 79 (296)
Q Consensus 28 ~~a~te~~~gs~~~~~~~~a~~~~~g~~l~G~K~~vt~~~~a~~~lv~a~~~ 79 (296)
++|+|||+.|+|+..+.+++++++++|+|||.|.||++++.||+++|+|+++
T Consensus 1 ~~a~tE~~~g~d~~~~~t~a~~~~~~~~L~G~K~~v~~~~~a~~~~v~ar~d 52 (52)
T PF02770_consen 1 AFALTEPGAGSDLAAVETTARRDGDGYVLNGEKRFVSNAPDADWFLVFARTD 52 (52)
T ss_dssp EEE--BTTBSSSGGG-SSEEEEETTEEEEEEEEEEEETTTTESEEEEEEEES
T ss_pred CEEEcCCCCCCCcccCEEEeecccceEEEeeEEEEECCcCccCEEEEEEEEC
Confidence 6899999999999999999999999999999999999999999999999973
No 49
>PF11794 HpaB_N: 4-hydroxyphenylacetate 3-hydroxylase N terminal; InterPro: IPR024674 This domain is found in the N terminus of HpaB, which encodes part of the 4-hydroxyphenylacetate 3-hydroxylase from Escherichia coli []. The enzyme is NADH-dependent and uses FAD as the redox chromophore. The domain is also found in pyoverdin chromophore biosynthetic protein (PvcC), which may play a role in one of the proposed hydroxylation steps of pyoverdine chromophore biosynthesis [] and in 4-hydroxybutyryl-CoA dehydratase (4-BUDH), a key enzyme in the metabolism of gamma-aminobutyrate [].; PDB: 3HWC_D 1U8V_D 2YYM_A 2YYI_A 2YYJ_A 2YYL_A 2YYG_A 2YYK_A.
Probab=99.15 E-value=3.4e-10 Score=95.76 Aligned_cols=118 Identities=21% Similarity=0.347 Sum_probs=79.1
Q ss_pred HHHHHHhHhhhccccceeEEecCCCCC--CCc--CC--Cee-EEEEECCEEEEEeEEEeecCCCCCCEEEEEEEeC---C
Q 022503 11 AQKRKYLPSLAQLTTMASWALTEPNHG--SDA--SA--LST-AATKVEGGWILEGQKRWIGNSTFADVLVVMARNT---T 80 (296)
Q Consensus 11 ~q~~~~l~~i~~g~~~~~~a~te~~~g--s~~--~~--~~~-~a~~~~~g~~l~G~K~~vt~~~~a~~~lv~a~~~---~ 80 (296)
+-...|+..+.++.+..+.+++.|... ... .. +-. ..+++++|.+|+|.|...|+++.+|.++|+.... +
T Consensus 123 ~n~~~y~~~~~~ndL~~t~a~~dPq~DRs~~~~q~d~d~~lrVVee~~dGIvVrGAK~~~T~a~~adei~V~p~~~~~~~ 202 (264)
T PF11794_consen 123 ENIRRYYEYVQENDLFLTHAITDPQGDRSKPPHQEDPDVYLRVVEETDDGIVVRGAKMLATGAPYADEILVFPTRAMRPG 202 (264)
T ss_dssp HHHHHHHHHHHHHT--EEEEES--SSSTTSTGGSSSCCSB-EEEEE-SSEEEEEEEEEEEETGCCSSEEEE--SSSSTTC
T ss_pred HHHHHHHHHHHHhCcEeeeeeeCCCcCCCCCccccCCCceEEEEEEcCCCEEEeChhhhhcCCcccccEEEeeccCCCCC
Confidence 345779999999999999999999641 111 11 223 4456889999999999999999999999987643 1
Q ss_pred C-CCeEEEEEeCCCCCeEEeeccccccccc--cc----------ccceEeeeeeeCCCCCC
Q 022503 81 T-KKINAFIVKKDAPGLTATKIENKIGLRM--LQ----------NGDILFKKVFVPDEDRL 128 (296)
Q Consensus 81 ~-~~~~~flv~~~~~Gv~~~~~~~~~g~~~--~~----------~~~~~f~~v~Vp~~~~l 128 (296)
+ +-..+|.||.++||+++.........+. .+ -+-+.||||+||.++|+
T Consensus 203 d~dyAv~FavP~~tpGlk~i~R~s~~~~~~~~~D~PlssrfdE~Da~vvFDdVfVPWeRVF 263 (264)
T PF11794_consen 203 DEDYAVAFAVPMNTPGLKIICRESYADGRRSPFDHPLSSRFDEMDALVVFDDVFVPWERVF 263 (264)
T ss_dssp CGGG-EEEEEETT-TTEEEEE---TTGCCG-TTT-TTTTS----EEEEEEEEEEEEGGGEE
T ss_pred CCceEEEEEccCCCCCEEEEeCCCCCCCccccCcCCcccccCCceEEEEECCcccchhhcc
Confidence 2 3356799999999999987765544441 12 14589999999999875
No 50
>PF03241 HpaB: 4-hydroxyphenylacetate 3-hydroxylase C terminal; InterPro: IPR024719 This C-terminal domain is found in HpaB, which encodes part of the 4-hydroxyphenylacetate 3-hydroxylase from Escherichia coli []. The enzyme is NADH-dependent and uses FAD as the redox chromophore. This domain is also found in pyoverdin chromophore biosynthetic protein PvcC, which may play a role in one of the proposed hydroxylation steps of pyoverdine chromophore biosynthesis [] and in 4-hydroxybutyryl-CoA dehydratase (4-BUDH), a key enzyme in the metabolism of gamma-aminobutyrate [].; PDB: 3HWC_D 1U8V_D 2YYM_A 2YYI_A 2YYJ_A 2YYL_A 2YYG_A 2YYK_A.
Probab=97.35 E-value=0.019 Score=47.30 Aligned_cols=71 Identities=14% Similarity=0.160 Sum_probs=58.6
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-----CCChhHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcC
Q 022503 177 LAAFQITQQKLAQMLGNIQAMNLVGWRLCRMCENG-----KMSLGQASLGKAWVSARARETVALGRELLGGNGIVT 247 (296)
Q Consensus 177 ~~~~~~~q~~l~~~~~~~~a~~~~~~~~~~~~d~~-----~~~~~~~~~~K~~a~~~a~~~~~~~~~~~G~~g~~~ 247 (296)
+.++|++|++|+++....|.+++++..+....... .|+......+|.+..+.-.++++.+.+++||.-.+-
T Consensus 44 ~~~~~hVqekl~Eli~~~E~~~a~~~Aae~~a~~~~~G~~~P~~~~~~a~r~~~~~~y~r~~eil~~l~gg~li~~ 119 (205)
T PF03241_consen 44 IDKFPHVQEKLGELIAYLETLRALLIAAEAEAEPDPSGVYVPNPLPLNAARNYFPKNYPRIVEILQDLGGGGLITL 119 (205)
T ss_dssp GTTSHHHHHHHHHHHHHHHHHHHHHHHHHHT-EE-TTSSEE--HHHHHHHHHHHHHHHHHHHHHHHHHHGGGGTC-
T ss_pred CccchHHHHHHHHHHHHHHHHHHHHHHHHhcCccCCCCeEeECHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeeeC
Confidence 67899999999999999999999999887754331 256667899999999999999999999999876664
No 51
>PTZ00457 acyl-CoA dehydrogenase; Provisional
Probab=92.49 E-value=2.8 Score=39.70 Aligned_cols=74 Identities=18% Similarity=0.165 Sum_probs=62.4
Q ss_pred hCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCh-hHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcC
Q 022503 173 FGAPLAAFQITQQKLAQMLGNIQAMNLVGWRLCRMCENGKMSL-GQASLGKAWVSARARETVALGRELLGGNGIVT 247 (296)
Q Consensus 173 ~~~~~~~~~~~q~~l~~~~~~~~a~~~~~~~~~~~~d~~~~~~-~~~~~~K~~a~~~a~~~~~~~~~~~G~~g~~~ 247 (296)
+|+.|.+.|.+..||+|+.+.++++-+.+-++...+..+.+.. .+..+++.|+.+...++-..+-+++.. ++..
T Consensus 429 ~~~~i~~~q~~l~rlad~a~~lyam~a~~sra~~~~~~~~~~~~~e~~la~~fc~~a~~rv~~~~~~~~~~-~~~~ 503 (520)
T PTZ00457 429 SGSQVPYQQLLLNRLGEAASLLYAASAVASRASMCVSKGLPSAKVEGELASAFIAMAVSRARQLSEESCNV-GKTA 503 (520)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcc-Cccc
Confidence 5788999999999999999999999999999999888875553 346789999999998888888788776 4444
No 52
>KOG0137 consensus Very-long-chain acyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=90.52 E-value=7 Score=37.02 Aligned_cols=70 Identities=24% Similarity=0.115 Sum_probs=63.0
Q ss_pred hCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-ChhHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 022503 173 FGAPLAAFQITQQKLAQMLGNIQAMNLVGWRLCRMCENGKM-SLGQASLGKAWVSARARETVALGRELLGG 242 (296)
Q Consensus 173 ~~~~~~~~~~~q~~l~~~~~~~~a~~~~~~~~~~~~d~~~~-~~~~~~~~K~~a~~~a~~~~~~~~~~~G~ 242 (296)
+++.+.+.|.+-+++++..++++++-+.+.+|.+.+..+.+ .+.+.+.+++|+++...++...+.++.++
T Consensus 533 ~~k~iv~~q~~l~rlA~~~~~iYam~a~isRASrS~~igl~~aDhEl~~at~~C~ea~~~~~~~l~~~~~~ 603 (634)
T KOG0137|consen 533 HGKGIVEEQSVLQRLANVAINIYAMVAVISRASRSYSIGLPNADHELALATAICSEASLRVLRWLWAASSG 603 (634)
T ss_pred hccchhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHhcCCcchhHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 58899999999999999999999999999999999988754 46688999999999999999888887776
No 53
>PRK09463 fadE acyl-CoA dehydrogenase; Reviewed
Probab=66.40 E-value=1.5e+02 Score=29.88 Aligned_cols=103 Identities=14% Similarity=0.015 Sum_probs=68.0
Q ss_pred hCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcCcChHH
Q 022503 173 FGAPLAAFQITQQKLAQMLGNIQAMNLVGWRLCRMCENGKMSLGQASLGKAWVSARARETVALGRELLGGNGIVTDFLVG 252 (296)
Q Consensus 173 ~~~~~~~~~~~q~~l~~~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~~K~~a~~~a~~~~~~~~~~~G~~g~~~~~~l~ 252 (296)
.|..+.+.|.+..||+|+.+.++.+-+.+.+.. +++.+... ..++++++.+...++-+.+-.+..-.. ...+.
T Consensus 559 ~g~~l~~~e~~~~Rl~d~~~~ly~~~a~l~r~~---~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~n~p---~~~~~ 631 (777)
T PRK09463 559 LGGSLKRRERLSARLGDILSQLYLASAVLKRYE---DEGRPEAD-LPLVHWAVQDALYQAEQALDGLLRNFP---NRVVA 631 (777)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hCCCchhH-HHHHHHHHHHHHHHHHHHHHHHHHcCC---chHHH
Confidence 377888999999999999999999999888776 34433322 456677666666665555545544333 23344
Q ss_pred HHhhhcC--CcccccchHHHHHHHHHHHHhcC
Q 022503 253 KAFCDFE--PFHTGEGSYDINNLIAAREITGF 282 (296)
Q Consensus 253 r~~rd~~--~~~~~~g~~~~~~~~~~~~~l~~ 282 (296)
.++|-+. ......++++.+..++++.++..
T Consensus 632 ~~~~~~~~p~g~~~~~p~d~~~~~~~~~~~~~ 663 (777)
T PRK09463 632 GLLRVLVFPLGRRYRAPSDKLDHQVAKLLQTP 663 (777)
T ss_pred HHHHHeeeCCCCCCCCCCHHHHHHHHHHHhCC
Confidence 4554431 22345677788888888877643
No 54
>PF12584 TRAPPC10: Trafficking protein particle complex subunit 10, TRAPPC10; InterPro: IPR022233 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. This entry represents a domain which forms part of the TRAPP complex for mediating vesicle docking and fusion in the Golgi apparatus. The fungal version is referred to as Trs130, and an alternative vertebrate alias is TMEM1 [, ].
Probab=30.36 E-value=88 Score=24.09 Aligned_cols=43 Identities=12% Similarity=0.305 Sum_probs=24.4
Q ss_pred ECCEEEEEeEEEeecCCCCCCEEEEEEEeCCCCCeEEEEEeCC-----CCCeEEeecc
Q 022503 50 VEGGWILEGQKRWIGNSTFADVLVVMARNTTTKKINAFIVKKD-----APGLTATKIE 102 (296)
Q Consensus 50 ~~~g~~l~G~K~~vt~~~~a~~~lv~a~~~~~~~~~~flv~~~-----~~Gv~~~~~~ 102 (296)
+.+.|.|+|.|+..-.. ..+....+.+.|+|.. -|.|++....
T Consensus 67 ~~~~WlV~Grrrg~f~~----------~~~~~~~~~l~LIPL~~G~L~lP~V~i~~~~ 114 (147)
T PF12584_consen 67 DSDNWLVSGRRRGVFSL----------SDGSEHEIPLTLIPLRAGYLPLPKVEIRPYD 114 (147)
T ss_pred CCCcEEEeccCcceEEe----------cCCCeEEEEEEEEecccceecCCEEEEEecc
Confidence 56679999998632211 1111123566777764 4667776554
No 55
>PF13051 DUF3912: Protein of unknown function (DUF3912)
Probab=28.74 E-value=1.1e+02 Score=19.36 Aligned_cols=36 Identities=19% Similarity=0.359 Sum_probs=25.3
Q ss_pred EEEEeEEEeecCCCCCCEEEEEEEeCCCCCeEEEEE
Q 022503 54 WILEGQKRWIGNSTFADVLVVMARNTTTKKINAFIV 89 (296)
Q Consensus 54 ~~l~G~K~~vt~~~~a~~~lv~a~~~~~~~~~~flv 89 (296)
|-+.|.|.|+-.+++-+-+-+.-+.+..-+.++++|
T Consensus 2 fdi~gqkayikdgp~rnrigivk~~e~q~~~~f~iv 37 (68)
T PF13051_consen 2 FDIVGQKAYIKDGPYRNRIGIVKKNEKQLESHFAIV 37 (68)
T ss_pred ccccccEeeeccCCccceeEEEecchhhcCCcEEEE
Confidence 457899999999999988877666543334444444
No 56
>PF15631 Imm-NTF2-2: NTF2 fold immunity protein
Probab=21.41 E-value=1.1e+02 Score=20.20 Aligned_cols=18 Identities=28% Similarity=0.416 Sum_probs=13.4
Q ss_pred eeEEEEECCEEEEEeEEE
Q 022503 44 STAATKVEGGWILEGQKR 61 (296)
Q Consensus 44 ~~~a~~~~~g~~l~G~K~ 61 (296)
+-.+..+++.|+|+|++.
T Consensus 23 P~~v~~~~~~WiV~Gtl~ 40 (66)
T PF15631_consen 23 PYRVTLDGDSWIVEGTLP 40 (66)
T ss_pred CeEEecCCCeEEEEeecC
Confidence 445666777899999973
Done!