Query 022504
Match_columns 296
No_of_seqs 130 out of 1288
Neff 8.3
Searched_HMMs 46136
Date Fri Mar 29 04:02:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022504.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022504hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00411 nodulin MtN21 family 100.0 4E-35 8.6E-40 271.3 28.5 278 10-289 11-294 (358)
2 PRK11272 putative DMT superfam 100.0 2.1E-27 4.6E-32 215.0 25.9 245 13-293 9-259 (292)
3 PRK11453 O-acetylserine/cystei 100.0 3E-27 6.6E-32 214.7 25.5 247 14-294 6-262 (299)
4 PRK11689 aromatic amino acid e 100.0 1E-26 2.2E-31 210.9 22.8 251 10-293 2-261 (295)
5 TIGR00950 2A78 Carboxylate/Ami 100.0 4.1E-26 9E-31 202.6 23.9 232 24-293 1-238 (260)
6 TIGR00688 rarD rarD protein. T 99.9 1.1E-25 2.4E-30 199.9 23.2 242 12-292 2-253 (256)
7 PRK10532 threonine and homoser 99.9 4.4E-25 9.5E-30 200.0 26.3 247 5-293 5-255 (293)
8 PRK15430 putative chlorampheni 99.9 2.5E-25 5.4E-30 201.9 22.1 249 6-293 2-259 (296)
9 TIGR00817 tpt Tpt phosphate/ph 99.9 1E-21 2.2E-26 178.6 24.8 235 29-293 19-267 (302)
10 TIGR03340 phn_DUF6 phosphonate 99.9 8.2E-21 1.8E-25 171.0 22.1 246 14-293 3-257 (281)
11 PTZ00343 triose or hexose phos 99.9 6.8E-20 1.5E-24 169.9 25.0 238 25-293 62-322 (350)
12 COG0697 RhaT Permeases of the 99.8 6.1E-18 1.3E-22 151.4 25.6 251 9-293 4-261 (292)
13 PF06027 DUF914: Eukaryotic pr 99.8 3.6E-16 7.8E-21 142.7 24.9 240 19-278 20-261 (334)
14 TIGR00776 RhaT RhaT L-rhamnose 99.6 2.7E-14 5.8E-19 129.2 20.6 248 13-292 2-257 (290)
15 PF00892 EamA: EamA-like trans 99.6 8.6E-15 1.9E-19 114.8 9.4 124 22-153 1-125 (126)
16 COG5006 rhtA Threonine/homoser 99.6 1.6E-12 3.4E-17 111.7 21.3 242 12-293 12-256 (292)
17 COG2962 RarD Predicted permeas 99.5 3.9E-12 8.5E-17 111.7 22.0 232 10-278 5-239 (293)
18 COG2510 Predicted membrane pro 99.5 3.4E-13 7.4E-18 104.2 11.4 134 13-153 4-138 (140)
19 PF08449 UAA: UAA transporter 99.4 4E-10 8.7E-15 102.6 25.0 247 26-294 14-268 (303)
20 KOG2765 Predicted membrane pro 99.4 1.4E-11 2.9E-16 111.3 14.1 192 79-289 162-360 (416)
21 KOG4510 Permease of the drug/m 99.3 6.6E-13 1.4E-17 114.8 4.2 241 12-278 38-283 (346)
22 TIGR00950 2A78 Carboxylate/Ami 99.3 9.1E-11 2E-15 104.0 15.5 132 9-149 125-259 (260)
23 PF13536 EmrE: Multidrug resis 99.2 3.5E-11 7.6E-16 93.6 7.2 102 46-154 2-106 (113)
24 PRK11272 putative DMT superfam 99.0 1.2E-08 2.6E-13 92.4 15.2 136 10-153 148-284 (292)
25 PRK10532 threonine and homoser 99.0 2.3E-08 5E-13 90.6 15.4 136 10-155 146-282 (293)
26 PF04142 Nuc_sug_transp: Nucle 98.9 2.4E-07 5.2E-12 81.7 18.9 193 72-278 13-209 (244)
27 PRK11689 aromatic amino acid e 98.8 7.8E-08 1.7E-12 87.2 14.2 132 11-153 155-286 (295)
28 PLN00411 nodulin MtN21 family 98.8 2.4E-07 5.3E-12 86.2 15.5 137 12-156 189-330 (358)
29 TIGR03340 phn_DUF6 phosphonate 98.7 9.7E-08 2.1E-12 86.0 11.1 134 10-151 142-280 (281)
30 PRK11453 O-acetylserine/cystei 98.7 7.1E-07 1.5E-11 81.1 16.1 137 10-153 141-286 (299)
31 PF03151 TPT: Triose-phosphate 98.7 5.8E-07 1.3E-11 73.1 14.1 133 13-151 1-150 (153)
32 TIGR00817 tpt Tpt phosphate/ph 98.7 1E-07 2.2E-12 86.7 10.5 138 10-153 143-292 (302)
33 KOG1441 Glucose-6-phosphate/ph 98.7 1.3E-06 2.9E-11 79.3 16.7 220 30-278 35-263 (316)
34 KOG2766 Predicted membrane pro 98.7 8.6E-09 1.9E-13 89.0 2.4 232 17-278 24-257 (336)
35 KOG2234 Predicted UDP-galactos 98.6 7.7E-05 1.7E-09 67.9 25.3 203 12-230 15-231 (345)
36 PTZ00343 triose or hexose phos 98.5 2.4E-06 5.3E-11 79.4 15.1 137 10-152 192-346 (350)
37 TIGR00776 RhaT RhaT L-rhamnose 98.5 2.7E-06 5.8E-11 77.1 12.5 134 10-153 150-287 (290)
38 KOG1444 Nucleotide-sugar trans 98.4 0.00017 3.6E-09 64.8 21.9 252 12-294 12-274 (314)
39 COG0697 RhaT Permeases of the 98.4 1.3E-05 2.9E-10 71.4 15.1 132 11-153 153-286 (292)
40 PRK15051 4-amino-4-deoxy-L-ara 98.3 3.3E-06 7.2E-11 65.4 8.1 67 81-153 41-108 (111)
41 PRK15430 putative chlorampheni 98.3 1.4E-05 3.1E-10 72.5 13.6 132 15-153 152-284 (296)
42 KOG1443 Predicted integral mem 98.2 0.0002 4.4E-09 63.8 17.5 201 9-237 12-222 (349)
43 PF00892 EamA: EamA-like trans 98.2 3.7E-06 8.1E-11 65.3 5.5 96 193-293 1-100 (126)
44 KOG3912 Predicted integral mem 97.9 0.00066 1.4E-08 60.0 15.3 188 25-232 16-226 (372)
45 PRK02971 4-amino-4-deoxy-L-ara 97.9 0.00035 7.5E-09 55.5 11.6 117 12-153 2-121 (129)
46 KOG1580 UDP-galactose transpor 97.8 0.00041 8.9E-09 59.8 12.2 184 78-283 87-273 (337)
47 KOG4314 Predicted carbohydrate 97.8 0.0002 4.3E-09 60.1 9.9 101 83-208 60-160 (290)
48 COG2510 Predicted membrane pro 97.6 0.0015 3.2E-08 51.2 10.8 107 185-294 5-114 (140)
49 PF06027 DUF914: Eukaryotic pr 97.5 0.0014 3.1E-08 60.3 12.4 140 8-154 164-305 (334)
50 PF08449 UAA: UAA transporter 97.5 0.0027 5.9E-08 57.8 14.0 135 13-153 155-296 (303)
51 COG5006 rhtA Threonine/homoser 97.5 0.002 4.3E-08 56.2 11.6 132 9-149 145-277 (292)
52 PF06800 Sugar_transport: Suga 97.2 0.1 2.2E-06 46.5 20.0 181 73-278 42-223 (269)
53 KOG1442 GDP-fucose transporter 97.2 0.0033 7.2E-08 55.5 10.3 211 31-265 47-271 (347)
54 PF06800 Sugar_transport: Suga 97.2 0.0056 1.2E-07 54.5 11.6 133 9-150 135-267 (269)
55 PRK13499 rhamnose-proton sympo 97.1 0.027 5.9E-07 52.1 15.9 174 10-199 5-190 (345)
56 TIGR00688 rarD rarD protein. T 97.1 0.013 2.8E-07 51.8 13.3 105 16-123 150-255 (256)
57 KOG1581 UDP-galactose transpor 97.0 0.11 2.5E-06 46.6 18.0 213 40-278 50-269 (327)
58 PF05653 Mg_trans_NIPA: Magnes 97.0 0.034 7.4E-07 50.6 15.1 119 9-155 4-123 (300)
59 PF03151 TPT: Triose-phosphate 97.0 0.008 1.7E-07 48.5 9.6 108 184-293 1-127 (153)
60 KOG1441 Glucose-6-phosphate/ph 96.9 0.0028 6E-08 57.9 7.2 136 10-152 161-305 (316)
61 PRK13499 rhamnose-proton sympo 96.7 0.086 1.9E-06 48.8 15.1 145 9-154 171-341 (345)
62 PF10639 UPF0546: Uncharacteri 96.6 0.009 1.9E-07 46.1 6.5 110 18-152 2-112 (113)
63 COG2962 RarD Predicted permeas 96.4 0.12 2.6E-06 46.3 13.5 126 19-153 155-282 (293)
64 PRK10650 multidrug efflux syst 96.2 0.094 2E-06 40.3 10.6 60 87-152 46-106 (109)
65 KOG4510 Permease of the drug/m 95.9 0.01 2.2E-07 52.4 4.2 135 11-153 190-324 (346)
66 PF04657 DUF606: Protein of un 95.8 0.23 4.9E-06 39.9 11.6 107 40-151 29-138 (138)
67 PRK10452 multidrug efflux syst 95.8 0.037 8E-07 43.3 6.5 67 82-154 35-103 (120)
68 PRK09541 emrE multidrug efflux 95.8 0.13 2.7E-06 39.7 9.4 65 83-153 36-102 (110)
69 PF00893 Multi_Drug_Res: Small 95.6 0.096 2.1E-06 39.0 8.0 56 83-144 35-92 (93)
70 COG2076 EmrE Membrane transpor 95.6 0.1 2.3E-06 39.7 8.1 65 83-153 36-102 (106)
71 PRK11431 multidrug efflux syst 95.3 0.24 5.2E-06 37.8 9.5 64 84-153 36-101 (105)
72 COG3238 Uncharacterized protei 93.4 2 4.4E-05 34.8 11.3 138 11-152 4-144 (150)
73 KOG1444 Nucleotide-sugar trans 93.3 0.84 1.8E-05 41.4 9.8 138 10-153 155-299 (314)
74 KOG2765 Predicted membrane pro 93.3 0.97 2.1E-05 42.0 10.3 139 9-154 244-390 (416)
75 COG5070 VRG4 Nucleotide-sugar 93.1 2.1 4.5E-05 37.1 11.3 211 41-277 37-251 (309)
76 KOG1580 UDP-galactose transpor 92.7 0.29 6.3E-06 42.6 5.7 73 75-153 240-312 (337)
77 TIGR00803 nst UDP-galactose tr 92.4 0.7 1.5E-05 39.8 8.0 59 86-150 162-220 (222)
78 KOG2922 Uncharacterized conser 92.2 0.1 2.2E-06 47.2 2.5 118 9-154 18-136 (335)
79 KOG1581 UDP-galactose transpor 91.6 2.7 5.8E-05 38.1 10.6 138 9-153 169-312 (327)
80 KOG1582 UDP-galactose transpor 90.7 3.6 7.9E-05 36.7 10.4 211 3-242 33-250 (367)
81 PF04657 DUF606: Protein of un 90.7 2.7 5.9E-05 33.6 9.1 90 185-278 3-92 (138)
82 COG4975 GlcU Putative glucose 90.0 0.053 1.2E-06 47.3 -1.4 171 13-205 3-174 (288)
83 KOG1443 Predicted integral mem 88.8 8.3 0.00018 35.1 11.3 137 10-152 162-313 (349)
84 PF07857 DUF1632: CEO family ( 87.7 15 0.00033 32.6 12.3 134 13-156 1-136 (254)
85 KOG3912 Predicted integral mem 85.7 7.5 0.00016 35.0 9.2 136 10-151 174-331 (372)
86 COG5070 VRG4 Nucleotide-sugar 84.6 4.9 0.00011 34.9 7.3 117 30-152 173-294 (309)
87 TIGR00803 nst UDP-galactose tr 83.8 9.6 0.00021 32.7 9.2 30 180-209 82-111 (222)
88 KOG1583 UDP-N-acetylglucosamin 81.6 12 0.00026 33.7 8.7 183 26-220 17-202 (330)
89 COG4975 GlcU Putative glucose 79.8 1.7 3.8E-05 38.1 2.9 133 12-153 152-284 (288)
90 COG3238 Uncharacterized protei 73.1 31 0.00067 28.1 8.3 56 182-237 4-59 (150)
91 PF04142 Nuc_sug_transp: Nucle 72.2 68 0.0015 28.2 12.8 122 10-131 112-236 (244)
92 COG1968 BacA Undecaprenyl pyro 70.7 79 0.0017 28.3 11.7 115 11-126 84-210 (270)
93 PRK02971 4-amino-4-deoxy-L-ara 70.1 6 0.00013 31.2 3.6 74 184-278 3-76 (129)
94 KOG1582 UDP-galactose transpor 65.5 18 0.0004 32.4 5.9 111 38-154 217-332 (367)
95 KOG4831 Unnamed protein [Funct 60.8 73 0.0016 24.3 9.1 111 15-152 6-123 (125)
96 PF04342 DUF486: Protein of un 57.8 72 0.0016 24.3 7.0 63 82-150 40-104 (108)
97 PF02419 PsbL: PsbL protein; 55.0 24 0.00051 21.2 3.2 27 2-28 9-35 (37)
98 PF13536 EmrE: Multidrug resis 54.3 24 0.00052 26.7 4.3 43 249-293 34-80 (113)
99 CHL00038 psbL photosystem II p 52.9 22 0.00048 21.4 2.9 27 2-28 10-36 (38)
100 PRK00753 psbL photosystem II r 51.6 21 0.00046 21.6 2.7 27 2-28 11-37 (39)
101 COG4657 RnfA Predicted NADH:ub 46.8 67 0.0015 26.5 5.8 29 181-209 130-158 (193)
102 PRK15462 dipeptide/tripeptide 44.0 1.9E+02 0.0042 28.3 9.7 18 105-122 310-327 (493)
103 PF06379 RhaT: L-rhamnose-prot 40.4 3.1E+02 0.0067 25.5 12.0 183 6-200 1-190 (344)
104 PF07857 DUF1632: CEO family ( 38.3 96 0.0021 27.5 6.0 54 9-62 180-244 (254)
105 KOG1583 UDP-N-acetylglucosamin 34.9 2.7E+02 0.006 25.2 8.2 134 12-153 164-313 (330)
106 PF05653 Mg_trans_NIPA: Magnes 33.4 1.1E+02 0.0024 27.8 5.8 68 87-154 223-292 (300)
107 COG1593 DctQ TRAP-type C4-dica 30.3 3.8E+02 0.0082 25.3 8.8 55 69-126 156-212 (379)
108 PF05297 Herpes_LMP1: Herpesvi 27.0 21 0.00046 32.1 0.0 27 101-127 48-75 (381)
109 PF09656 PGPGW: Putative trans 24.9 2.1E+02 0.0046 18.8 5.1 45 138-208 5-49 (53)
110 PF06570 DUF1129: Protein of u 23.9 2.7E+02 0.0058 23.6 6.3 59 6-65 142-200 (206)
111 COG3104 PTR2 Dipeptide/tripept 23.6 6.3E+02 0.014 24.8 9.3 50 104-154 325-378 (498)
112 COG3086 RseC Positive regulato 23.0 96 0.0021 25.1 3.0 28 96-123 68-95 (150)
113 KOG2766 Predicted membrane pro 22.5 1.6E+02 0.0034 26.5 4.5 136 7-152 161-297 (336)
114 PRK02237 hypothetical protein; 22.2 1E+02 0.0022 23.6 2.8 20 134-153 85-104 (109)
115 KOG1442 GDP-fucose transporter 22.1 5.4E+02 0.012 23.4 7.8 131 2-132 172-311 (347)
116 PF11139 DUF2910: Protein of u 21.4 5E+02 0.011 21.9 11.8 66 88-153 127-210 (214)
117 PF02694 UPF0060: Uncharacteri 20.9 94 0.002 23.7 2.5 21 134-154 83-103 (107)
No 1
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=100.00 E-value=4e-35 Score=271.32 Aligned_cols=278 Identities=34% Similarity=0.500 Sum_probs=217.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcCC-CCCCCHHHHHHHHHHHHHHHH
Q 022504 10 AALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSE-RPQLTFSILCSFFLLSVFGCS 88 (296)
Q Consensus 10 ~~~~~l~l~~~~~~wg~~~i~~K~~~~~~~~p~~~~~~R~~~A~l~l~~~~~~~~r~~-~~~~~~~~~~~~~~~g~~g~~ 88 (296)
+.|+|+.++.+++..++..++.|.+++.+++|+.+.++|+.+|+++++++++.++|++ +++.+++++.++.+.|+++..
T Consensus 11 ~~~~~~~~~~~q~~~~~~~~~~k~a~~~G~~~~~~~~~R~~iA~l~Ll~~~~~~~~~~~~~~~~~~~~~~l~l~g~~g~~ 90 (358)
T PLN00411 11 EAVFLTAMLATETSVVGISTLFKVATSKGLNIYPFLGYSYLLASLLLLPSLFFTNRSRSLPPLSVSILSKIGLLGFLGSM 90 (358)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHH
Confidence 5689999999999999999999999999999999999999999999999887654433 344568888999999998866
Q ss_pred HHHHHHHHhhccCchhhhhhcchhhHHHHHHHHHHhhcccccccccccchhhhHHHhhhhhhhhhhccCCCCcCCC--CC
Q 022504 89 SQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGEL--SH 166 (296)
Q Consensus 89 ~~~~~~~gl~~tsa~~asil~~~~Pv~~~ils~~~~~E~~~~~~~~~~~~~iG~~l~~~G~~ll~~~~g~~~~~~~--~~ 166 (296)
++.+++.|++|+++++++++.+++|+++.+++++++.|+++.++|.+++|++|++++++|+.++...+++.....+ .+
T Consensus 91 ~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~~~g~~~~~~~~~~~ 170 (358)
T PLN00411 91 YVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIFYHGPRVFVASSPPY 170 (358)
T ss_pred HHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHHccCccccccccccc
Confidence 7779999999999999999999999999999999976777777777778999999999999988765443210000 00
Q ss_pred CCC--CCcccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHhcC-CCccee
Q 022504 167 SGS--PRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSE-PSDWKL 243 (296)
Q Consensus 167 ~~~--~~~~~~~~~~~~~~G~ll~l~aa~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~-~~~~~~ 243 (296)
-|. +......+..+...|+++.++++++||+|++++||..+++|++...++|+..++++.+.+.+...+++ ...|..
T Consensus 171 ~~~~~~~~~~~~~~~~~~lG~~l~l~aa~~wa~~~il~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 250 (358)
T PLN00411 171 LNFRQLSPPLSSSNSDWLIGGALLTIQGIFVSVSFILQAHIMSEYPAAFTVSFLYTVCVSIVTSMIGLVVEKNNPSVWII 250 (358)
T ss_pred ccccccccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHhHHHHHHHHHHHHHHHHHHHHHccCCccccee
Confidence 000 00000011123467999999999999999999999999997666888999999988888877766543 233433
Q ss_pred ccchhHHHHHHHHHhhhHHHHHHHHHHHhcCCceeeecccccHHHH
Q 022504 244 GLDIGLVAVLYSLLALGFELACAHGACRELDLFMYQCSSPWPLSSL 289 (296)
Q Consensus 244 ~~~~~~~~lly~gv~~t~~ay~l~~~~l~~~g~~~~~s~~~p~~~l 289 (296)
.++...+.++|.+++ +.++|.+|++++|+.||++ ++.+.+++++
T Consensus 251 ~~~~~~~~i~y~~i~-t~lay~lw~~~v~~~ga~~-as~~~~L~PV 294 (358)
T PLN00411 251 HFDITLITIVTMAII-TSVYYVIHSWTVRHKGPLY-LAIFKPLSIL 294 (358)
T ss_pred ccchHHHHHHHHHHH-HHHHHHHHHHHHhccCchH-HHHHHhHHHH
Confidence 333345678899975 6789999999999999999 7776655543
No 2
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=99.96 E-value=2.1e-27 Score=215.02 Aligned_cols=245 Identities=11% Similarity=-0.007 Sum_probs=194.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHH-HHHHH
Q 022504 13 PSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFG-CSSQI 91 (296)
Q Consensus 13 ~~l~l~~~~~~wg~~~i~~K~~~~~~~~p~~~~~~R~~~A~l~l~~~~~~~~r~~~~~~~~~~~~~~~~~g~~g-~~~~~ 91 (296)
-.+.+++..++||.+++++|.+.+ ++||.+++++|+.+++++++++...+ |+++ .++++++.....|.++ ..++.
T Consensus 9 ~~~~~~~~~~iWg~~~~~~K~~~~-~~~p~~~~~~R~~~a~l~ll~~~~~~-~~~~--~~~~~~~~~~~~g~~~~~~~~~ 84 (292)
T PRK11272 9 LFGALFALYIIWGSTYLVIRIGVE-SWPPLMMAGVRFLIAGILLLAFLLLR-GHPL--PTLRQWLNAALIGLLLLAVGNG 84 (292)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHhc-cCCHHHHHHHHHHHHHHHHHHHHHHh-CCCC--CcHHHHHHHHHHHHHHHHHHHH
Confidence 356677899999999999999887 69999999999999999988876442 2222 3467888888899888 78888
Q ss_pred HHHHHh-hccCchhhhhhcchhhHHHHHHHHHHhhcccccccccccchhhhHHHhhhhhhhhhhccCCCCcCCCCCCCCC
Q 022504 92 FSFVGI-QYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSP 170 (296)
Q Consensus 92 ~~~~gl-~~tsa~~asil~~~~Pv~~~ils~~~~~E~~~~~~~~~~~~~iG~~l~~~G~~ll~~~~g~~~~~~~~~~~~~ 170 (296)
+++.+. +++++++++++.++.|+++.+++.+ +|||++++ +++|++++++|+.++...++
T Consensus 85 ~~~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~------~~~~~~la~~Gv~ll~~~~~------------- 144 (292)
T PRK11272 85 MVTVAEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKL------EWLGIAIGLAGIVLLNSGGN------------- 144 (292)
T ss_pred HHHHHHHccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchh------HHHHHHHHHHhHHHHhcCcc-------------
Confidence 999999 9999999999999999999999975 69998766 59999999999988752110
Q ss_pred CcccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHhcCCCcceeccchhHH
Q 022504 171 RRLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLV 250 (296)
Q Consensus 171 ~~~~~~~~~~~~~G~ll~l~aa~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (296)
. .....|+++.++++++||.|++..||..++. +...+++++.++++.+.+.....+.+... ..+...|.
T Consensus 145 -----~--~~~~~G~l~~l~a~~~~a~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 213 (292)
T PRK11272 145 -----L--SGNPWGAILILIASASWAFGSVWSSRLPLPV--GMMAGAAEMLAAGVVLLIASLLSGERLTA--LPTLSGFL 213 (292)
T ss_pred -----c--ccchHHHHHHHHHHHHHHHHHHHHHhcCCCc--chHHHHHHHHHHHHHHHHHHHHcCCcccc--cCCHHHHH
Confidence 0 1234699999999999999999999975543 35567899999988888776544332111 11223578
Q ss_pred HHHHHHHhhhHHHHHHHHHHHhcCCceeeecc---cccHHH-HHHhh
Q 022504 251 AVLYSLLALGFELACAHGACRELDLFMYQCSS---PWPLSS-LLSWM 293 (296)
Q Consensus 251 ~lly~gv~~t~~ay~l~~~~l~~~g~~~~~s~---~~p~~~-l~~~~ 293 (296)
.++|+++++|+++|.+|++++|+.+++. ++. ++|+.+ +++|+
T Consensus 214 ~i~~l~i~~s~~~~~l~~~~~~~~~~~~-~s~~~~l~Pi~a~i~~~~ 259 (292)
T PRK11272 214 ALGYLAVFGSIIAISAYMYLLRNVRPAL-ATSYAYVNPVVAVLLGTG 259 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCHHH-HHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999988 554 567774 67765
No 3
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=99.96 E-value=3e-27 Score=214.68 Aligned_cols=247 Identities=16% Similarity=0.094 Sum_probs=183.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHH-HHHHHH
Q 022504 14 SVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFG-CSSQIF 92 (296)
Q Consensus 14 ~l~l~~~~~~wg~~~i~~K~~~~~~~~p~~~~~~R~~~A~l~l~~~~~~~~r~~~~~~~~~~~~~~~~~g~~g-~~~~~~ 92 (296)
.+.++.++++||.+++++|.+++ ++||.++.++|+.++++.++++. + |++ .+++ .....|+.. ..++.+
T Consensus 6 ~l~~l~~~~~Wg~~~~~~k~~~~-~~~p~~~~~~R~~~a~~~l~~~~--~-~~~---~~~~---~~~~~g~~~~~~~~~~ 75 (299)
T PRK11453 6 GVLALLVVVVWGLNFVVIKVGLH-NMPPLMLAGLRFMLVAFPAIFFV--A-RPK---VPLN---LLLGYGLTISFGQFAF 75 (299)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHHHh--c-CCC---CchH---HHHHHHHHHHHHHHHH
Confidence 35678899999999999999987 59999999999999887765542 1 221 2232 344556655 566678
Q ss_pred HHHHhhcc-CchhhhhhcchhhHHHHHHHHHHhhcccccccccccchhhhHHHhhhhhhhhhhccCCCCcCCCCCCCCCC
Q 022504 93 SFVGIQYS-SPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPR 171 (296)
Q Consensus 93 ~~~gl~~t-sa~~asil~~~~Pv~~~ils~~~~~E~~~~~~~~~~~~~iG~~l~~~G~~ll~~~~g~~~~~~~~~~~~~~ 171 (296)
++.+++|+ ++++++++.+++|+++.+++++++|||++++ +++|++++++|+.++... +.
T Consensus 76 ~~~~~~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~------~~~~~~l~~~Gv~ll~~~-~~------------- 135 (299)
T PRK11453 76 LFCAINFGMPAGLASLVLQAQAFFTIVLGAFTFGERLQGK------QLAGIALAIFGVLVLIED-SL------------- 135 (299)
T ss_pred HHHHHHhcCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHH------HHHHHHHHHHhHHHhccc-cC-------------
Confidence 88999985 7899999999999999999999999998766 599999999999887621 10
Q ss_pred cccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcchh--HHHHHHHHHHHHHHHHHHHHHHhcCCC---cceeccc
Q 022504 172 RLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFAAV--LIIMFYLFFFNTILSTAFALIVVSEPS---DWKLGLD 246 (296)
Q Consensus 172 ~~~~~~~~~~~~G~ll~l~aa~~~a~~~v~~k~~~~~~~~~--~~~~~~~~~~g~i~~~~~~~~~~~~~~---~~~~~~~ 246 (296)
.+......|+++.+.++++|+.|++++||..++.+++ .....++...+.++....+...+++.. .+...+.
T Consensus 136 ----~~~~~~~~G~~l~l~aal~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (299)
T PRK11453 136 ----NGQHVAMLGFMLTLAAAFSWACGNIFNKKIMSHSTRPAVMSLVVWSALIPIIPFFVASLILDGSATMIHSLVTIDM 211 (299)
T ss_pred ----CCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcccCccchhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhccCCH
Confidence 0111234699999999999999999999987765422 345567777776665555444443211 1111122
Q ss_pred hhHHHHHHHHHhhhHHHHHHHHHHHhcCCceee--ecccccHH-HHHHhhh
Q 022504 247 IGLVAVLYSLLALGFELACAHGACRELDLFMYQ--CSSPWPLS-SLLSWMS 294 (296)
Q Consensus 247 ~~~~~lly~gv~~t~~ay~l~~~~l~~~g~~~~--~s~~~p~~-~l~~~~~ 294 (296)
..|..++|+|+++|+++|.+|++++||.++.+. .+.++|+. .+++|+.
T Consensus 212 ~~~~~l~~l~i~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~ 262 (299)
T PRK11453 212 TTILSLMYLAFVATIVGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALL 262 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 358899999999999999999999999999872 23367877 4777763
No 4
>PRK11689 aromatic amino acid exporter; Provisional
Probab=99.95 E-value=1e-26 Score=210.91 Aligned_cols=251 Identities=14% Similarity=0.092 Sum_probs=177.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHH-HH
Q 022504 10 AALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFG-CS 88 (296)
Q Consensus 10 ~~~~~l~l~~~~~~wg~~~i~~K~~~~~~~~p~~~~~~R~~~A~l~l~~~~~~~~r~~~~~~~~~~~~~~~~~g~~g-~~ 88 (296)
|.+.++.++.++++||.+++.+|.+++ ++||+.+.++|+.+|+++++++. ++++.++.++ +....+.++ ..
T Consensus 2 ~~~~~l~~l~a~~~Wg~~~~~~k~~~~-~~~P~~~~~~R~~~a~l~l~~~~---~~~~~~~~~~----~~~~~~~l~~~~ 73 (295)
T PRK11689 2 SQKATLIGLIAILLWSTMVGLIRGVSE-SLGPVGGAAMIYSVSGLLLLLTV---GFPRLRQFPK----RYLLAGGLLFVS 73 (295)
T ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHc-cCChHHHHHHHHHHHHHHHHHHc---cccccccccH----HHHHHHhHHHHH
Confidence 567888999999999999999999987 59999999999999999987652 1211111122 233445556 77
Q ss_pred HHHHHHHHhhc----cCchhhhhhcchhhHHHHHHHHHHhhcccccccccccchhhhHHHhhhhhhhhhhccCCCCcCCC
Q 022504 89 SQIFSFVGIQY----SSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGEL 164 (296)
Q Consensus 89 ~~~~~~~gl~~----tsa~~asil~~~~Pv~~~ils~~~~~E~~~~~~~~~~~~~iG~~l~~~G~~ll~~~~g~~~~~~~ 164 (296)
++.+++.++++ +++++++++.+++|+++.+++++++|||++++ +++|++++++|++++... ++....
T Consensus 74 ~~~~~~~a~~~~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~------~~~g~~l~~~Gv~li~~~-~~~~~~-- 144 (295)
T PRK11689 74 YEICLALSLGYANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWL------LIPGLLLALAGVAWVLGG-DNGLSL-- 144 (295)
T ss_pred HHHHHHHHHHHhhccccchHHHHHHHHhHHHHHHHHHHHhcCCccHH------HHHHHHHHHHhHhheecC-Cccchh--
Confidence 88888888765 57788899999999999999999999998766 699999999999888632 110000
Q ss_pred CCCCCCCcccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHhcCCCcceec
Q 022504 165 SHSGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLG 244 (296)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~G~ll~l~aa~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~ 244 (296)
+ +..++..+...|+++.++++++||.|+++.||..++++ +... .+ ..+++.+.+.... ++++ ..+..
T Consensus 145 --~-----~~~~~~~~~~~G~~~~l~aa~~~A~~~v~~k~~~~~~~-~~~~--~~-~~~~~~l~~~~~~-~~~~-~~~~~ 211 (295)
T PRK11689 145 --A-----ELINNIASNPLSYGLAFIGAFIWAAYCNVTRKYARGKN-GITL--FF-ILTALALWIKYFL-SPQP-AMVFS 211 (295)
T ss_pred --h-----hhhhccccChHHHHHHHHHHHHHHHHHHHHhhccCCCC-chhH--HH-HHHHHHHHHHHHH-hcCc-cccCC
Confidence 0 00000012346999999999999999999999977764 5433 22 3333444433333 2221 11122
Q ss_pred cchhHHHHHHHHHhhhHHHHHHHHHHHhcCCceeeecc---cccHH-HHHHhh
Q 022504 245 LDIGLVAVLYSLLALGFELACAHGACRELDLFMYQCSS---PWPLS-SLLSWM 293 (296)
Q Consensus 245 ~~~~~~~lly~gv~~t~~ay~l~~~~l~~~g~~~~~s~---~~p~~-~l~~~~ 293 (296)
+ ..|..++|.++ +|+++|.+|++++|+.+|++ ++. ++|+. .+++|+
T Consensus 212 ~-~~~~~l~~~~~-~t~~~~~l~~~al~~~~a~~-~s~~~~l~Pv~a~i~~~~ 261 (295)
T PRK11689 212 L-PAIIKLLLAAA-AMGFGYAAWNVGILHGNMTL-LATASYFTPVLSAALAAL 261 (295)
T ss_pred H-HHHHHHHHHHH-HHHHHHHHHHHHHHccCHHH-HHHHHHhHHHHHHHHHHH
Confidence 2 35777888885 79999999999999999998 555 45765 466654
No 5
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=99.95 E-value=4.1e-26 Score=202.58 Aligned_cols=232 Identities=17% Similarity=0.105 Sum_probs=186.6
Q ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHH-HHHHHHHHHHhhccCc
Q 022504 24 QVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFG-CSSQIFSFVGIQYSSP 102 (296)
Q Consensus 24 wg~~~i~~K~~~~~~~~p~~~~~~R~~~A~l~l~~~~~~~~r~~~~~~~~~~~~~~~~~g~~g-~~~~~~~~~gl~~tsa 102 (296)
||.+++.+|..++++.||....+.|+..+.+++.++... | .+++++.+....|.++ ..++.+++.|++|+++
T Consensus 1 Wg~~~~~~k~~~~~~~~~~~~~~~r~~~~~l~l~~~~~~--~-----~~~~~~~~~~~~~~~~~~l~~~~~~~a~~~~~~ 73 (260)
T TIGR00950 1 WGTTGVVIGQYLEGQVPLYFAVFRRLIFALLLLLPLLRR--R-----PPLKRLLRLLLLGALQIGVFYVLYFVAVKRLPV 73 (260)
T ss_pred CcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHh--c-----cCHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCh
Confidence 899999999998877999999999999998887775432 2 2345667788888888 9999999999999999
Q ss_pred hhhhhhcchhhHHHHHHHHHHhhcccccccccccchhhhHHHhhhhhhhhhhccCCCCcCCCCCCCCCCcccCCCCCchh
Q 022504 103 TLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWI 182 (296)
Q Consensus 103 ~~asil~~~~Pv~~~ils~~~~~E~~~~~~~~~~~~~iG~~l~~~G~~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (296)
++++++.++.|+++.+++.+++|||++++ +++|+.++++|+.++... ++ .....
T Consensus 74 ~~~~ii~~~~P~~~~~~~~l~~~e~~~~~------~~~gi~i~~~Gv~li~~~-~~-------------------~~~~~ 127 (260)
T TIGR00950 74 GEAALLLYLAPLYVTLLSDLMGKERPRKL------VLLAAVLGLAGAVLLLSD-GN-------------------LSINP 127 (260)
T ss_pred hhhHHHHhhhHHHHHHHHHHHccCCCcHH------HHHHHHHHHHhHHhhccC-Cc-------------------ccccH
Confidence 99999999999999999999999998766 589999999999887521 10 11236
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcc-hhHHHHHHHHHHHHHHHHHHHHHHhcCCCcceeccchhHHHHHHHHHhhhH
Q 022504 183 LGGFFLAAEAFMNSAWFILQALILRKFA-AVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVAVLYSLLALGF 261 (296)
Q Consensus 183 ~G~ll~l~aa~~~a~~~v~~k~~~~~~~-~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~lly~gv~~t~ 261 (296)
.|+++.++++++|+.+.+..||..++.+ ++...+.+++.++.+.+.+.....+++. .+ +...+..+++.+++++.
T Consensus 128 ~G~~~~l~a~~~~a~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~ 203 (260)
T TIGR00950 128 AGLLLGLGSGISFALGTVLYKRLVKKEGPELLQFTGWVLLLGALLLLPFAWFLGPNP-QA---LSLQWGALLYLGLIGTA 203 (260)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHhcCCCC-Cc---chHHHHHHHHHHHHHHH
Confidence 7999999999999999999999987764 2345566888899888888766543321 11 22346778999999999
Q ss_pred HHHHHHHHHHhcCCceeeeccc---ccHH-HHHHhh
Q 022504 262 ELACAHGACRELDLFMYQCSSP---WPLS-SLLSWM 293 (296)
Q Consensus 262 ~ay~l~~~~l~~~g~~~~~s~~---~p~~-~l~~~~ 293 (296)
++|.+|++++|+.++.+ ++.+ +|+. .+++|+
T Consensus 204 ~~~~~~~~a~~~~~~~~-~s~~~~~~pv~~~ll~~~ 238 (260)
T TIGR00950 204 LAYFLWNKGLTLVDPSA-ASILALAEPLVALLLGLL 238 (260)
T ss_pred HHHHHHHHHHhcCCchH-HHHHHHHHHHHHHHHHHH
Confidence 99999999999999988 6554 4555 466654
No 6
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=99.95 E-value=1.1e-25 Score=199.93 Aligned_cols=242 Identities=10% Similarity=-0.045 Sum_probs=169.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcCC-----CCCCCHHH-HHHHHHHHHH
Q 022504 12 LPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSE-----RPQLTFSI-LCSFFLLSVF 85 (296)
Q Consensus 12 ~~~l~l~~~~~~wg~~~i~~K~~~~~~~~p~~~~~~R~~~A~l~l~~~~~~~~r~~-----~~~~~~~~-~~~~~~~g~~ 85 (296)
|+++.+++++++||.+++++|. .+ ++||.++.++|+.+|++++.++...++|++ .++.++++ +......|++
T Consensus 2 ~g~~~~i~a~~~wg~~~~~~k~-~~-~~~~~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 79 (256)
T TIGR00688 2 KGIIVSLLASFLFGYMYYYSKL-LK-PLPATDILGHRMIWSFPFMLLSVTLFRQWAALIERLKRIQKRPLILSLLLCGLL 79 (256)
T ss_pred CcHHHHHHHHHHHHHHHHHHHH-hc-cCCHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhCcccchHHHHHHHHHHH
Confidence 5889999999999999999998 44 599999999999999988877654332211 11122232 3445566666
Q ss_pred HHHHHHHHHHHhhccCchhhhhhcchhhHHHHHHHHHHhhcccccccccccchhhhHHHhhhhhhhhhhccCCCCcCCCC
Q 022504 86 GCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELS 165 (296)
Q Consensus 86 g~~~~~~~~~gl~~tsa~~asil~~~~Pv~~~ils~~~~~E~~~~~~~~~~~~~iG~~l~~~G~~ll~~~~g~~~~~~~~ 165 (296)
...++.+++++++++++++++++.+++|+++.+++++++|||++++ +++|+.++++|++++...++
T Consensus 80 ~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~------~~l~~~~~~~Gv~li~~~~~-------- 145 (256)
T TIGR00688 80 IGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRF------QFIAVIIATLGVISNIVLKG-------- 145 (256)
T ss_pred HHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH------HHHHHHHHHHHHHHHHHHcC--------
Confidence 6888999999999999999999999999999999999999998776 59999999999988752111
Q ss_pred CCCCCCcccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHhcCCCcceecc
Q 022504 166 HSGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGL 245 (296)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~G~ll~l~aa~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~ 245 (296)
.. ..+.++++++||.|.+..||..++ + .......+ ........+... .++.+...+..+
T Consensus 146 -------------~~----~~~~l~aa~~~a~~~i~~~~~~~~-~-~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~ 204 (256)
T TIGR00688 146 -------------SL----PWEALVLAFSFTAYGLIRKALKNT-D-LAGFCLET-LSLMPVAIYYLL-QTDFATVQQTNP 204 (256)
T ss_pred -------------Cc----hHHHHHHHHHHHHHHHHHhhcCCC-C-cchHHHHH-HHHHHHHHHHHH-HhccCcccccCc
Confidence 01 135788999999999998887543 2 22221111 111111111111 112111111112
Q ss_pred chhHHHHHHHHHhhhHHHHHHHHHHHhcCCceeeeccc---ccHHH-HHHh
Q 022504 246 DIGLVAVLYSLLALGFELACAHGACRELDLFMYQCSSP---WPLSS-LLSW 292 (296)
Q Consensus 246 ~~~~~~lly~gv~~t~~ay~l~~~~l~~~g~~~~~s~~---~p~~~-l~~~ 292 (296)
+..|..+++.|++ |.++|.+|++++|+.++++ ++.+ +|+.+ ++++
T Consensus 205 ~~~~~~l~~~g~~-t~i~~~l~~~a~~~~~a~~-~s~~~yl~Pv~~~~~~~ 253 (256)
T TIGR00688 205 FPIWLLLVLAGLI-TGTPLLAFVIAANRLPLNL-LGLLQYIGPTIMMLCVS 253 (256)
T ss_pred hhHHHHHHHHHHH-HHHHHHHHHHHHHcCChHH-HHHHHHHHHHHHHHHHH
Confidence 2257778888885 9999999999999999998 6654 46553 4443
No 7
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=99.94 E-value=4.4e-25 Score=199.99 Aligned_cols=247 Identities=9% Similarity=-0.011 Sum_probs=187.5
Q ss_pred cccchhhhHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHH
Q 022504 5 MGSMRAALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSV 84 (296)
Q Consensus 5 ~~~~~~~~~~l~l~~~~~~wg~~~i~~K~~~~~~~~p~~~~~~R~~~A~l~l~~~~~~~~r~~~~~~~~~~~~~~~~~g~ 84 (296)
.+..++.+++..+++++++|+.+++++|.+.++ +||..+.++|+.+|+++++++... +++ +.++|+++..+..|+
T Consensus 5 ~~~~~~~~~~~~~~la~~~~~~~~~~~K~~~~~-~~~~~~~~~R~~~a~l~l~~~~~~--~~~--~~~~~~~~~~~~~g~ 79 (293)
T PRK10532 5 LRKLPVWLPILLLLIAMASIQSGASLAKSLFPL-VGAPGVTALRLALGTLILIAIFKP--WRL--RFAKEQRLPLLFYGV 79 (293)
T ss_pred ccccccchHHHHHHHHHHHHHhhHHHHHHHHHH-cCHHHHHHHHHHHHHHHHHHHHhH--Hhc--cCCHHHHHHHHHHHH
Confidence 444567889999999999999999999999874 999999999999999988776422 221 245677778888888
Q ss_pred HHHHHHHHHHHHhhccCchhhhhhcchhhHHHHHHHHHHhhcccccccccccchhhhHHHhhhhhhhhhhccCCCCcCCC
Q 022504 85 FGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGEL 164 (296)
Q Consensus 85 ~g~~~~~~~~~gl~~tsa~~asil~~~~Pv~~~ils~~~~~E~~~~~~~~~~~~~iG~~l~~~G~~ll~~~~g~~~~~~~ 164 (296)
+....+.+++++++|++++.++++.++.|+++.+++ +||.+ +..++.++++|+.++... +.+
T Consensus 80 ~~~~~~~~~~~al~~~~~~~a~~l~~t~Pi~~~ll~----~~~~~--------~~~~~~i~~~Gv~li~~~-~~~----- 141 (293)
T PRK10532 80 SLGGMNYLFYLSIQTVPLGIAVALEFTGPLAVALFS----SRRPV--------DFVWVVLAVLGLWFLLPL-GQD----- 141 (293)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHh----cCChH--------HHHHHHHHHHHHheeeec-CCC-----
Confidence 776667889999999999999999999999998776 24321 245678889999887521 110
Q ss_pred CCCCCCCcccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHhcCCCcceec
Q 022504 165 SHSGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLG 244 (296)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~G~ll~l~aa~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~ 244 (296)
. +.....|+++.++++++||.|++..||..++.+ +... .++..++++.+.++....+++ ..++
T Consensus 142 -----------~-~~~~~~G~ll~l~aa~~~a~~~v~~r~~~~~~~-~~~~-~~~~~~~~~~l~~~~~~~~~~-~~~~-- 204 (293)
T PRK10532 142 -----------V-SHVDLTGAALALGAGACWAIYILSGQRAGAEHG-PATV-AIGSLIAALIFVPIGALQAGE-ALWH-- 204 (293)
T ss_pred -----------c-ccCChHHHHHHHHHHHHHHHHHHHHHHHhccCC-chHH-HHHHHHHHHHHHHHHHHccCc-ccCC--
Confidence 1 112357999999999999999999999987764 5555 566677777777766543321 1111
Q ss_pred cchhHHHHHHHHHhhhHHHHHHHHHHHhcCCceeeecc---cccHH-HHHHhh
Q 022504 245 LDIGLVAVLYSLLALGFELACAHGACRELDLFMYQCSS---PWPLS-SLLSWM 293 (296)
Q Consensus 245 ~~~~~~~lly~gv~~t~~ay~l~~~~l~~~g~~~~~s~---~~p~~-~l~~~~ 293 (296)
+ ..+..++|+|+++|.++|.+|++++||.+|++ ++. .+|+. ++++|+
T Consensus 205 ~-~~~~~~l~lgv~~t~~~~~l~~~~~~~~~a~~-as~~~~l~Pv~a~l~~~l 255 (293)
T PRK10532 205 W-SILPLGLAVAILSTALPYSLEMIALTRLPTRT-FGTLMSMEPALAAVSGMI 255 (293)
T ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHHHHhcChhH-HHHHHHhHHHHHHHHHHH
Confidence 1 23556789999999999999999999999988 665 45666 466664
No 8
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=99.94 E-value=2.5e-25 Score=201.88 Aligned_cols=249 Identities=13% Similarity=0.012 Sum_probs=176.5
Q ss_pred ccchhhhHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcCCC--CC-CCHHHHHHHHHH
Q 022504 6 GSMRAALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSER--PQ-LTFSILCSFFLL 82 (296)
Q Consensus 6 ~~~~~~~~~l~l~~~~~~wg~~~i~~K~~~~~~~~p~~~~~~R~~~A~l~l~~~~~~~~r~~~--~~-~~~~~~~~~~~~ 82 (296)
+.+++.|+++.+++++++||.+++++|.. + ++||.++.++|+.++.++++++...+++++. ++ .+++++.. ...
T Consensus 2 ~~~~~~~g~~~~l~a~~~wg~~~~~~k~~-~-~~~~~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 78 (296)
T PRK15430 2 DAKQTRQGVLLALAAYFIWGIAPAYFKLI-Y-YVPADEILTHRVIWSFFFMVVLMSICRQWSYLKTLIQTPQKIFM-LAV 78 (296)
T ss_pred CchhhhhHHHHHHHHHHHHHHHHHHHHHh-c-CCCHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHcCHHHHHH-HHH
Confidence 44567889999999999999999999985 4 5999999999999999988776544321111 01 13444333 336
Q ss_pred HHHH-HHHHHHHHHHhhccCchhhhhhcchhhHHHHHHHHHHhhcccccccccccchhhhHHHhhhhhhhhhhccCCCCc
Q 022504 83 SVFG-CSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLI 161 (296)
Q Consensus 83 g~~g-~~~~~~~~~gl~~tsa~~asil~~~~Pv~~~ils~~~~~E~~~~~~~~~~~~~iG~~l~~~G~~ll~~~~g~~~~ 161 (296)
+.++ ..++.++++|++++++++++++.++.|+++.+++++++|||++++ +++|++++++|++++....|
T Consensus 79 ~~~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~------~~~g~~l~~~Gv~li~~~~~---- 148 (296)
T PRK15430 79 SAVLIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRM------QWLAVILAICGVLVQLWTFG---- 148 (296)
T ss_pred HHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHH------HHHHHHHHHHHHHHHHHHcC----
Confidence 6666 889999999999999999999999999999999999999998766 59999999999988762111
Q ss_pred CCCCCCCCCCcccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhc-chhHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Q 022504 162 GELSHSGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKF-AAVLIIMFYLFFFNTILSTAFALIVVSEPSD 240 (296)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~G~ll~l~aa~~~a~~~v~~k~~~~~~-~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~ 240 (296)
.. ..+.++++++||.|++..||..++. .+....+.++..++.....+. .+.+...
T Consensus 149 -----------------~~----~~~~l~aa~~~a~~~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ 204 (296)
T PRK15430 149 -----------------SL----PIIALGLAFSFAFYGLVRKKIAVEAQTGMLIETMWLLPVAAIYLFAI---ADSSTSH 204 (296)
T ss_pred -----------------Cc----cHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHH---ccCCccc
Confidence 01 1467889999999999988864321 123444556665554442221 1111111
Q ss_pred ceeccchhHHHHHHHHHhhhHHHHHHHHHHHhcCCceeeeccc---ccHH-HHHHhh
Q 022504 241 WKLGLDIGLVAVLYSLLALGFELACAHGACRELDLFMYQCSSP---WPLS-SLLSWM 293 (296)
Q Consensus 241 ~~~~~~~~~~~lly~gv~~t~~ay~l~~~~l~~~g~~~~~s~~---~p~~-~l~~~~ 293 (296)
+.. .+..++..++.+.+.|.++|.+|++++|+.+|++ ++.+ +|+. .+++|+
T Consensus 205 ~~~-~~~~~~~~~~~~g~~t~i~~~~~~~a~~~~~a~~-~s~~~~l~Pv~a~~~g~l 259 (296)
T PRK15430 205 MGQ-NPMSLNLLLIAAGIVTTVPLLCFTAAATRLRLST-LGFFQYIGPTLMFLLAVT 259 (296)
T ss_pred ccC-CcHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH-HHHHHHHHHHHHHHHHHH
Confidence 111 1122334444433478899999999999999998 6554 5665 466765
No 9
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=99.90 E-value=1e-21 Score=178.62 Aligned_cols=235 Identities=12% Similarity=0.062 Sum_probs=173.0
Q ss_pred HHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCchhhhhh
Q 022504 29 EVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAM 108 (296)
Q Consensus 29 i~~K~~~~~~~~p~~~~~~R~~~A~l~l~~~~~~~~r~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~gl~~tsa~~asil 108 (296)
+..|.++++--+|..+.+.|+.++.+.+.+... ..++++++.+++|+++++..|++++.++.+.+.|++|++++.++++
T Consensus 19 ~~NK~~l~~~~~P~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~s~s~~~li 97 (302)
T TIGR00817 19 IYNKKLLNVFPYPYFKTLISLAVGSLYCLLSWS-SGLPKRLKISSALLKLLLPVAIVHTIGHVTSNVSLSKVAVSFTHTI 97 (302)
T ss_pred HHHHHHHhhCChhHHHHHHHHHHHHHHHHHHHH-hCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 468999875467999999999999887665421 1222334567899999999999998888999999999999999999
Q ss_pred cchhhHHHHHHHHHHhhcccccccccccchhhhHHHhhhhhhhhhhccCCCCcCCCCCCCCCCcccCCCCCchhHHHHHH
Q 022504 109 LNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFL 188 (296)
Q Consensus 109 ~~~~Pv~~~ils~~~~~E~~~~~~~~~~~~~iG~~l~~~G~~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~G~ll~ 188 (296)
.+++|+++.+++++++|||++++ +++|+.++++|+.+... + +. .....|+++.
T Consensus 98 ~~~~Pv~~~ll~~~~~~e~~~~~------~~~~l~l~~~Gv~l~~~--~------------------~~-~~~~~G~~~~ 150 (302)
T TIGR00817 98 KAMEPFFSVVLSAFFLGQEFPST------LWLSLLPIVGGVALASD--T------------------EL-SFNWAGFLSA 150 (302)
T ss_pred HhcchHHHHHHHHHHhCCCCcHH------HHHHHHHHHHHHhhhcC--C------------------cc-cccHHHHHHH
Confidence 99999999999999999998766 68999999999976431 1 01 1235699999
Q ss_pred HHHHHHHHHHHHHHHHHHH--hcchhHHHHHHHHHHHHHHHHHHHHHHhcCCC---cceec-cchhHHHHHHHHHhhhHH
Q 022504 189 AAEAFMNSAWFILQALILR--KFAAVLIIMFYLFFFNTILSTAFALIVVSEPS---DWKLG-LDIGLVAVLYSLLALGFE 262 (296)
Q Consensus 189 l~aa~~~a~~~v~~k~~~~--~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~---~~~~~-~~~~~~~lly~gv~~t~~ 262 (296)
++++++|++|++..||..+ ++ |+..++.+++..+.+.+.|+....|+.+. ++... +......+.+.+++.+..
T Consensus 151 l~a~~~~a~~~v~~k~~~~~~~~-~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (302)
T TIGR00817 151 MISNITFVSRNIFSKKAMTIKSL-DKTNLYAYISIMSLFLLSPPAFITEGPPFLPHGFMQAISGVNVTKIYTVSLVAAMG 229 (302)
T ss_pred HHHHHHHHHHHHHHHHhhccCCC-CcccHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHhhcccCchHHHHHHHHHHHH
Confidence 9999999999999999887 66 47889999999999999998776653211 11000 000011122223333333
Q ss_pred HHH----HHHHHHhcCCceeeecc---cccHHH-HHHhh
Q 022504 263 LAC----AHGACRELDLFMYQCSS---PWPLSS-LLSWM 293 (296)
Q Consensus 263 ay~----l~~~~l~~~g~~~~~s~---~~p~~~-l~~~~ 293 (296)
++. ++++++|+.||++ ++. ++|+.+ +++|+
T Consensus 230 ~~~~~~~~~~~~l~~~sa~t-~sv~~~l~pv~~~~~~~~ 267 (302)
T TIGR00817 230 FFHFYQQVAFMLLGRVSPLT-HSVGNCMKRVVVIVVSIL 267 (302)
T ss_pred HHHHHHHHHHHHHccCCchH-HHHHhhhhhhheeeeehh
Confidence 444 5558999999998 555 456665 55654
No 10
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=99.88 E-value=8.2e-21 Score=171.00 Aligned_cols=246 Identities=9% Similarity=-0.102 Sum_probs=170.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhh-cCCCCCCCHHHHHHHHHHHHHH-HHHHH
Q 022504 14 SVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFH-RSERPQLTFSILCSFFLLSVFG-CSSQI 91 (296)
Q Consensus 14 ~l~l~~~~~~wg~~~i~~K~~~~~~~~p~~~~~~R~~~A~l~l~~~~~~~~-r~~~~~~~~~~~~~~~~~g~~g-~~~~~ 91 (296)
.+..+.++++|+...+.+|...++ -++ ..++++..+++++.|+...+. ++.+++.+++ +......+.++ ..++.
T Consensus 3 ~~~~~~aa~~~a~~~~~~k~~~~~-~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 78 (281)
T TIGR03340 3 LTLVVFSALMHAGWNLMAKSHADK-EPD--FLWWALLAHSVLLTPYGLWYLAQVGWSRLPAT-FWLLLAISAVANMVYFL 78 (281)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCc-hhH--HHHHHHHHHHHHHHHHHHHhcccCCCCCcchh-hHHHHHHHHHHHHHHHH
Confidence 456778999999999999965443 344 347777777777777665432 2222323333 34444555555 89999
Q ss_pred HHHHHhhccCchhhhhhcchhhHHHHHHHHHHhhcccccccccccchhhhHHHhhhhhhhhhhccCCCCcCCCCCCCCCC
Q 022504 92 FSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPR 171 (296)
Q Consensus 92 ~~~~gl~~tsa~~asil~~~~Pv~~~ils~~~~~E~~~~~~~~~~~~~iG~~l~~~G~~ll~~~~g~~~~~~~~~~~~~~ 171 (296)
+++.|++++++++++.+.++.|+++.+++++++|||++++ +++|+.+++.|++++... +.
T Consensus 79 ~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~------~~~g~~~~~~Gv~ll~~~-~~------------- 138 (281)
T TIGR03340 79 GLAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPL------AWLGILIITLGLLVLGLS-RF------------- 138 (281)
T ss_pred HHHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHH------HHHHHHHHHHHHHHHhcc-cc-------------
Confidence 9999999999999999999999999999999999998766 599999999999887621 10
Q ss_pred cccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcch---hHHHHHHHHHHHHHHHHHHHHHHhcCCCcceeccchh
Q 022504 172 RLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFAA---VLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIG 248 (296)
Q Consensus 172 ~~~~~~~~~~~~G~ll~l~aa~~~a~~~v~~k~~~~~~~~---~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~ 248 (296)
. .....|+.+.++++++|+.|++..|+..++.++ ....+.+++..+++++.+.....++.. +. ..+..
T Consensus 139 ---~---~~~~~g~~~~l~aal~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~ 209 (281)
T TIGR03340 139 ---A---QHRRKAYAWALAAALGTAIYSLSDKAAALGVPAFYSALGYLGIGFLAMGWPFLLLYLKRHGRS--MF-PYARQ 209 (281)
T ss_pred ---c---ccchhHHHHHHHHHHHHHHhhhhccccccchhcccccHHHHHHHHHHHHHHHHHHHHHHhccc--hh-hhHHH
Confidence 0 112358889999999999999998876554431 112334444443333333222212211 11 11224
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHhcCCceeeeccc---ccHH-HHHHhh
Q 022504 249 LVAVLYSLLALGFELACAHGACRELDLFMYQCSSP---WPLS-SLLSWM 293 (296)
Q Consensus 249 ~~~lly~gv~~t~~ay~l~~~~l~~~g~~~~~s~~---~p~~-~l~~~~ 293 (296)
++.++|.+.++++++|.+|++++|+.++++ ++.+ +|+. .+++|.
T Consensus 210 ~~~~~~~~~~~s~l~~~l~~~al~~~~a~~-~~~~~~l~pv~a~l~g~~ 257 (281)
T TIGR03340 210 ILPSATLGGLMIGGAYALVLWAMTRLPVAT-VVALRNTSIVFAVVLGIW 257 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCceE-EEeecccHHHHHHHHHHH
Confidence 567889999999999999999999999988 5544 4555 466664
No 11
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=99.87 E-value=6.8e-20 Score=169.92 Aligned_cols=238 Identities=13% Similarity=0.092 Sum_probs=174.9
Q ss_pred HHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHHHHHHHHHhhcCCCCCC--CHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 022504 25 VSNMEVIKAAMSKGIN-KYVIIVYSDALSSLFFLFCSFLFHRSERPQL--TFSILCSFFLLSVFGCSSQIFSFVGIQYSS 101 (296)
Q Consensus 25 g~~~i~~K~~~~~~~~-p~~~~~~R~~~A~l~l~~~~~~~~r~~~~~~--~~~~~~~~~~~g~~g~~~~~~~~~gl~~ts 101 (296)
...-...|.+++. +| |+.+..+|+.++.++...+.. .+.+++|+. .+++++.++.+|+++...+...+.|+++++
T Consensus 62 ~~~~~~nK~vl~~-~~~P~~l~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~llp~gl~~~~~~~~~~~sl~~~s 139 (350)
T PTZ00343 62 VLYVVDNKLALNM-LPLPWTISSLQLFVGWLFALLYWA-TGFRKIPRIKSLKLFLKNFLPQGLCHLFVHFGAVISMGLGA 139 (350)
T ss_pred HHHHHHHHHHHHh-CChhHHHHHHHHHHHHHHHHHHHH-hCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3445568999874 99 999999999999887655432 222223333 345788999999999434555779999999
Q ss_pred chhhhhhcchhhHHHHHHHHHHhhcccccccccccchhhhHHHhhhhhhhhhhccCCCCcCCCCCCCCCCcccCCCCCch
Q 022504 102 PTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSW 181 (296)
Q Consensus 102 a~~asil~~~~Pv~~~ils~~~~~E~~~~~~~~~~~~~iG~~l~~~G~~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 181 (296)
++.++++.++.|+++++++++++|||.+++ +++|+++.+.|+.+.+. + + . ...
T Consensus 140 vs~~~iika~~Pvft~lls~~~l~ek~s~~------~~l~l~l~v~Gv~l~~~--~-~-----------------~-~~~ 192 (350)
T PTZ00343 140 VSFTHVVKAAEPVFTALLSILFLKQFLNLY------AYLSLIPIVGGVALASV--K-E-----------------L-HFT 192 (350)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhCCCccHH------HHHHHHHHHHHHHheec--c-c-----------------c-hhH
Confidence 999999999999999999999999998766 69999999999988752 1 0 0 113
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhcc------hhHHHHHHHHHHHHHHHHHHHHHHhcCC--Ccce----eccchhH
Q 022504 182 ILGGFFLAAEAFMNSAWFILQALILRKFA------AVLIIMFYLFFFNTILSTAFALIVVSEP--SDWK----LGLDIGL 249 (296)
Q Consensus 182 ~~G~ll~l~aa~~~a~~~v~~k~~~~~~~------~~~~~~~~~~~~g~i~~~~~~~~~~~~~--~~~~----~~~~~~~ 249 (296)
..|++++++++++|++|++..||..++.+ ++.....++..+|.+.++|+....|... ..+. ......+
T Consensus 193 ~~G~~~~l~s~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~e~~~~~~~~~~~~~~~~~~~~ 272 (350)
T PTZ00343 193 WLAFWCAMLSNLGSSLRSIFAKKTMKNKSEIGENLTASNIYMLLTLIASLISLPLVLFFEGKKWVPVWTNYTANMTNYTK 272 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhcccccch
Confidence 57999999999999999999999877542 2444566668899999999877665421 1110 0011123
Q ss_pred HHHHHHHHhhhHHHHHHHHH----HHhcCCceeeeccc---ccHH-HHHHhh
Q 022504 250 VAVLYSLLALGFELACAHGA----CRELDLFMYQCSSP---WPLS-SLLSWM 293 (296)
Q Consensus 250 ~~lly~gv~~t~~ay~l~~~----~l~~~g~~~~~s~~---~p~~-~l~~~~ 293 (296)
..++|. ++.++++|.+|+. ++++++|.. .++. .|+. .+++|+
T Consensus 273 ~~~l~~-i~~s~l~~~l~n~~~f~~l~~~s~~t-~sv~~~lk~V~~iv~s~l 322 (350)
T PTZ00343 273 GIIIFK-IFFSGVWYYLYNEVAFYCLGKVNQVT-HAVANTLKRVVIIVSSII 322 (350)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHhccchhH-HHHHHHHHHHHHhhhhHH
Confidence 456665 5578999999995 999999987 5554 4554 355654
No 12
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=99.82 E-value=6.1e-18 Score=151.43 Aligned_cols=251 Identities=15% Similarity=0.165 Sum_probs=178.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHH-H
Q 022504 9 RAALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFG-C 87 (296)
Q Consensus 9 ~~~~~~l~l~~~~~~wg~~~i~~K~~~~~~~~p~~~~~~R~~~A~l~l~~~~~~~~r~~~~~~~~~~~~~~~~~g~~g-~ 87 (296)
+........+...+.|+.+....|...++..++....+.|+..+.+++.+.... ++....+ ..++++.....+.++ .
T Consensus 4 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~ 81 (292)
T COG0697 4 ALLLGLLALLLWGLLWGLSFIALKLAVESLDPFLFAAALRFLIAALLLLPLLLL-EPRGLRP-ALRPWLLLLLLALLGLA 81 (292)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHh-hcccccc-cccchHHHHHHHHHHHH
Confidence 345567778888899999999999987644677777788999999884443221 1111111 112234566666667 8
Q ss_pred HHHHHHHHHhhccCchhhhhhcchhhHHHHHHHH-HHhhcccccccccccchhhhHHHhhhhhhhhhhccCCCCcCCCCC
Q 022504 88 SSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAI-IFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSH 166 (296)
Q Consensus 88 ~~~~~~~~gl~~tsa~~asil~~~~Pv~~~ils~-~~~~E~~~~~~~~~~~~~iG~~l~~~G~~ll~~~~g~~~~~~~~~ 166 (296)
.++.+++.++++++++.++.+.++.|+++.+++. ++++||++++ ++.|+.+++.|++++....+.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~------~~~~~~~~~~Gv~lv~~~~~~-------- 147 (292)
T COG0697 82 LPFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLL------QILGILLALAGVLLILLGGGG-------- 147 (292)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHH------HHHHHHHHHHhHHheecCCCc--------
Confidence 9999999999999999999999999999999996 6679998766 689999999999988632110
Q ss_pred CCCCCcccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHH-HHHHHHHHHHHHHHHHHhcCCCcceecc
Q 022504 167 SGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMF-YLFFFNTILSTAFALIVVSEPSDWKLGL 245 (296)
Q Consensus 167 ~~~~~~~~~~~~~~~~~G~ll~l~aa~~~a~~~v~~k~~~~~~~~~~~~~~-~~~~~g~i~~~~~~~~~~~~~~~~~~~~ 245 (296)
.... ...|+.+.+.++++|+++.+..|+.. +.+ +..... ++.........+ ...... . .+. .
T Consensus 148 ---------~~~~-~~~g~~~~l~a~~~~a~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~--~~~~~~-~-~~~-~ 210 (292)
T COG0697 148 ---------GGIL-SLLGLLLALAAALLWALYTALVKRLS-RLG-PVTLALLLQLLLALLLLLL--FFLSGF-G-API-L 210 (292)
T ss_pred ---------chhH-HHHHHHHHHHHHHHHHHHHHHHHHhc-CCC-hHHHHHHHHHHHHHHHHHH--HHhccc-c-ccC-C
Confidence 0001 46899999999999999999999887 543 444444 554422222222 111111 1 111 1
Q ss_pred chhHHHHHHHHHhhhHHHHHHHHHHHhcCCceeeec---ccccHHHHH-Hhh
Q 022504 246 DIGLVAVLYSLLALGFELACAHGACRELDLFMYQCS---SPWPLSSLL-SWM 293 (296)
Q Consensus 246 ~~~~~~lly~gv~~t~~ay~l~~~~l~~~g~~~~~s---~~~p~~~l~-~~~ 293 (296)
...+..+.+.|+++++++|.+|++++++.++.. ++ ..+|+.+++ +|.
T Consensus 211 ~~~~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~l 261 (292)
T COG0697 211 SRAWLLLLYLGVFSTGLAYLLWYYALRLLGASL-VALLSLLEPVFAALLGVL 261 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchH-HHHHHHHHHHHHHHHHHH
Confidence 134778899999999999999999999999988 55 467877655 664
No 13
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=99.76 E-value=3.6e-16 Score=142.72 Aligned_cols=240 Identities=16% Similarity=0.166 Sum_probs=170.0
Q ss_pred HHHHHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHHHHHHHHHhhcC-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 022504 19 IVLLAQVSNMEVIKAAMSKGIN-KYVIIVYSDALSSLFFLFCSFLFHRS-ERPQLTFSILCSFFLLSVFGCSSQIFSFVG 96 (296)
Q Consensus 19 ~~~~~wg~~~i~~K~~~~~~~~-p~~~~~~R~~~A~l~l~~~~~~~~r~-~~~~~~~~~~~~~~~~g~~g~~~~~~~~~g 96 (296)
..+++-.++.+.++..-+.+.+ |..-.+.-+..-.++..+....++++ +..+..+++++..+++|++....+.+...|
T Consensus 20 ~lsl~~~~t~~~s~~l~~~~~~~P~~Qs~~~Y~~l~~vy~~~~~~r~~~~~~~~~~~~~~w~y~lla~~Dv~aN~~~v~a 99 (334)
T PF06027_consen 20 VLSLCITGTGTFSSLLANKGVNIPTFQSFFNYVLLALVYTPILLYRRGFKKWLKVLKRPWWKYFLLALLDVEANYLVVLA 99 (334)
T ss_pred HHHHHHHhHHHHHHHHHhcCccCcHHHHHHHHHHHHHHHhhhhhhccccccchhhcchhHHHHHHHHHHHHHHHHHHHHH
Confidence 4556667777777776665554 55555555544444444544333222 122223456777788899888888999999
Q ss_pred hhccCchhhhhhcchhhHHHHHHHHHHhhcccccccccccchhhhHHHhhhhhhhhhhccCCCCcCCCCCCCCCCcccCC
Q 022504 97 IQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLS 176 (296)
Q Consensus 97 l~~tsa~~asil~~~~Pv~~~ils~~~~~E~~~~~~~~~~~~~iG~~l~~~G~~ll~~~~g~~~~~~~~~~~~~~~~~~~ 176 (296)
++||+.+.+.++.++.-.++++++++++|||.++. +++|+.++++|+.+++..+.... + ++.
T Consensus 100 ~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~------~~~gv~i~i~Gv~lv~~sD~~~~----~--------~~~ 161 (334)
T PF06027_consen 100 YQYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWF------HILGVLICIAGVVLVVVSDVLSG----S--------DSS 161 (334)
T ss_pred hhcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHH------HHHHHHHHHhhhhheeeeccccc----c--------cCC
Confidence 99999999999999999999999999999998766 69999999999998875432110 0 122
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHhcCCCcceeccchhHHHHHHHH
Q 022504 177 PQLSWILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVAVLYSL 256 (296)
Q Consensus 177 ~~~~~~~G~ll~l~aa~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~lly~g 256 (296)
++++...||++++.+|..||++++++|+..|+.+ ......+.-++|.+...+...++|.+... +..|+..........
T Consensus 162 ~~~~~i~GDll~l~~a~lya~~nV~~E~~v~~~~-~~~~lg~~Glfg~ii~~iq~~ile~~~i~-~~~w~~~~~~~~v~~ 239 (334)
T PF06027_consen 162 SGSNPILGDLLALLGAILYAVSNVLEEKLVKKAP-RVEFLGMLGLFGFIISGIQLAILERSGIE-SIHWTSQVIGLLVGY 239 (334)
T ss_pred CCCccchhHHHHHHHHHHHHHHHHHHHHhcccCC-HHHHHHHHHHHHHHHHHHHHHheehhhhh-ccCCChhhHHHHHHH
Confidence 3456789999999999999999999999999985 66677777788888888877777754211 112222222222222
Q ss_pred HhhhHHHHHHHHHHHhcCCcee
Q 022504 257 LALGFELACAHGACRELDLFMY 278 (296)
Q Consensus 257 v~~t~~ay~l~~~~l~~~g~~~ 278 (296)
.++...-|.+....++..+|+.
T Consensus 240 ~~~lf~~y~l~p~~l~~ssAt~ 261 (334)
T PF06027_consen 240 ALCLFLFYSLVPIVLRMSSATF 261 (334)
T ss_pred HHHHHHHHHHHHHHHHhCccce
Confidence 3356777888899999988886
No 14
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=99.64 E-value=2.7e-14 Score=129.24 Aligned_cols=248 Identities=13% Similarity=-0.004 Sum_probs=166.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 022504 13 PSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFGCSSQIF 92 (296)
Q Consensus 13 ~~l~l~~~~~~wg~~~i~~K~~~~~~~~p~~~~~~R~~~A~l~l~~~~~~~~r~~~~~~~~~~~~~~~~~g~~g~~~~~~ 92 (296)
+++..++++++||.+++..|... +.++.++. |..++.+++..+....++.+ +.+++.+..-++.|..-...+.+
T Consensus 2 ~~l~~lia~~~wGs~g~~~k~~~--g~~~~~~~--~~~~g~l~~~~~~~~~~~~~--~~~~~~~~~g~l~G~~w~ig~~~ 75 (290)
T TIGR00776 2 DILIALIPALFWGSFVLINVKIG--GGPYSQTL--GTTFGALILSIAIAIFVLPE--FWALSIFLVGLLSGAFWALGQIN 75 (290)
T ss_pred chHHHHHHHHHHhhhHHHHhccC--CCHHHHHH--HHHHHHHHHHHHHHHHhCCc--ccccHHHHHHHHHHHHHHhhhhh
Confidence 36778899999999999999863 68888886 88888887776654432211 11123233333333333667899
Q ss_pred HHHHhhccCchhhhhhcc-hhhHHHHHHHHHHhhcccccccccccchhhhHHHhhhhhhhhhhccCCCCcCCCCCCCCCC
Q 022504 93 SFVGIQYSSPTLSTAMLN-LIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPR 171 (296)
Q Consensus 93 ~~~gl~~tsa~~asil~~-~~Pv~~~ils~~~~~E~~~~~~~~~~~~~iG~~l~~~G~~ll~~~~g~~~~~~~~~~~~~~ 171 (296)
++.++++++.+.+-.+.+ ++|++..+.+.+++|||.+.+++ ...++|+++.++|++++...++++.
T Consensus 76 ~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~~--~~~~~g~~l~l~G~~l~~~~~~~~~----------- 142 (290)
T TIGR00776 76 QFKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQT--LLGLLALILIIIGVYLTSRSKDKSA----------- 142 (290)
T ss_pred HHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHHH--HHHHHHHHHHHHhHheEEecccccc-----------
Confidence 999999999999988877 88899999999999999765420 1128999999999988753221100
Q ss_pred cccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHH---HHHHHHHHHHHHHhcCCCcceeccchh
Q 022504 172 RLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFF---FNTILSTAFALIVVSEPSDWKLGLDIG 248 (296)
Q Consensus 172 ~~~~~~~~~~~~G~ll~l~aa~~~a~~~v~~k~~~~~~~~~~~~~~~~~~---~g~i~~~~~~~~~~~~~~~~~~~~~~~ 248 (296)
..++..+..+|.++.++++++|+.|.+..|+. ++ +|...++.|.. .+++...+.. ...+ ++. ++..
T Consensus 143 --~~~~~~~~~~Gi~~~l~sg~~y~~~~~~~~~~--~~-~~~~~~~~~~~g~~~~~~~~~~~~--~~~~--~~~--~~~~ 211 (290)
T TIGR00776 143 --GIKSEFNFKKGILLLLMSTIGYLVYVVVAKAF--GV-DGLSVLLPQAIGMVIGGIIFNLGH--ILAK--PLK--KYAI 211 (290)
T ss_pred --ccccccchhhHHHHHHHHHHHHHHHHHHHHHc--CC-CcceehhHHHHHHHHHHHHHHHHH--hccc--chH--HHHH
Confidence 00000223579999999999999999998865 35 46777444443 3444333221 1111 121 1223
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHh-cCCceee--ecccccHHH-HHHh
Q 022504 249 LVAVLYSLLALGFELACAHGACRE-LDLFMYQ--CSSPWPLSS-LLSW 292 (296)
Q Consensus 249 ~~~lly~gv~~t~~ay~l~~~~l~-~~g~~~~--~s~~~p~~~-l~~~ 292 (296)
+..++ .|++ ++++|.+|..+.+ +.+++.. .+..+|+.+ ++++
T Consensus 212 ~~~~~-~Gi~-~~ia~~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v 257 (290)
T TIGR00776 212 LLNIL-PGLM-WGIGNFFYLFSAQPKVGVATSFSLSQLGVIISTLGGI 257 (290)
T ss_pred HHHHH-HHHH-HHHHHHHHHHHcccccchhhHHHHHHHHHHHHHHHHH
Confidence 44555 8887 8999999999999 8888762 345678875 4544
No 15
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=99.58 E-value=8.6e-15 Score=114.77 Aligned_cols=124 Identities=18% Similarity=0.334 Sum_probs=107.6
Q ss_pred HHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHH-HHHHHHHHHHhhcc
Q 022504 22 LAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFG-CSSQIFSFVGIQYS 100 (296)
Q Consensus 22 ~~wg~~~i~~K~~~~~~~~p~~~~~~R~~~A~l~l~~~~~~~~r~~~~~~~~~~~~~~~~~g~~g-~~~~~~~~~gl~~t 100 (296)
++||...+..|...++ +||....++|+..+++ ++++....+++..++.+++++......|.++ ...+.+++.+++++
T Consensus 1 ~~~a~~~~~~k~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 78 (126)
T PF00892_consen 1 FSWAIYSVFSKKLLKK-ISPLSITFWRFLIAGI-LLILLLILGRKPFKNLSPRQWLWLLFLGLLGTALAYLLYFYALKYI 78 (126)
T ss_pred ceeeeHHHHHHHHhcc-CCHHHHHHHHHHHHHH-HHHHHHhhccccccCCChhhhhhhhHhhccceehHHHHHHHHHHhc
Confidence 4699999999999874 9999999999999998 6666555544433456677888888999997 89999999999999
Q ss_pred CchhhhhhcchhhHHHHHHHHHHhhcccccccccccchhhhHHHhhhhhhhhh
Q 022504 101 SPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVT 153 (296)
Q Consensus 101 sa~~asil~~~~Pv~~~ils~~~~~E~~~~~~~~~~~~~iG~~l~~~G~~ll~ 153 (296)
+++.++.+.++.|+++.++++++++||++++ +++|+.+.+.|++++.
T Consensus 79 ~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~------~~~g~~l~~~g~~l~~ 125 (126)
T PF00892_consen 79 SASIVSILQYLSPVFAAILGWLFLGERPSWR------QIIGIILIIIGVVLIS 125 (126)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHcCCCCCHH------HHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998766 6999999999998764
No 16
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=99.55 E-value=1.6e-12 Score=111.70 Aligned_cols=242 Identities=11% Similarity=-0.026 Sum_probs=180.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 022504 12 LPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFGCSSQI 91 (296)
Q Consensus 12 ~~~l~l~~~~~~wg~~~i~~K~~~~~~~~p~~~~~~R~~~A~l~l~~~~~~~~r~~~~~~~~~~~~~~~~~g~~g~~~~~ 91 (296)
.+++.+..+++.-=+.--++|..... +.|...+.+|..+++++++.+..- .+.+.++++++.+...|..-...+.
T Consensus 12 ~p~~~ll~amvsiq~Gas~Ak~LFP~-vG~~g~t~lRl~~aaLIll~l~RP----wr~r~~~~~~~~~~~yGvsLg~MNl 86 (292)
T COG5006 12 LPILALLVAMVSIQSGASFAKSLFPL-VGAAGVTALRLAIAALILLALFRP----WRRRLSKPQRLALLAYGVSLGGMNL 86 (292)
T ss_pred ccHHHHHHHHHHHHhhHHHHHHHccc-cChhhHHHHHHHHHHHHHHHHhhH----HHhccChhhhHHHHHHHHHHHHHHH
Confidence 36788888888777778889998875 999999999999999998876322 1223567888899999987778888
Q ss_pred HHHHHhhccCchhhhhhcchhhHHHHHHHHHHhhcccccccccccchhhhHHHhhhhhhhhhhccCCCCcCCCCCCCCCC
Q 022504 92 FSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPR 171 (296)
Q Consensus 92 ~~~~gl~~tsa~~asil~~~~Pv~~~ils~~~~~E~~~~~~~~~~~~~iG~~l~~~G~~ll~~~~g~~~~~~~~~~~~~~ 171 (296)
++|.+++..+-+.+..+.++-|+.+..++. +| .+..+-+.+++.|+.++.- .++
T Consensus 87 ~FY~si~riPlGiAVAiEF~GPL~vA~~~s----Rr--------~~d~vwvaLAvlGi~lL~p-~~~------------- 140 (292)
T COG5006 87 LFYLSIERIPLGIAVAIEFTGPLAVALLSS----RR--------LRDFVWVALAVLGIWLLLP-LGQ------------- 140 (292)
T ss_pred HHHHHHHhccchhhhhhhhccHHHHHHHhc----cc--------hhhHHHHHHHHHHHHhhee-ccC-------------
Confidence 999999999999999999999998776552 11 1246677788899887752 121
Q ss_pred cccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHhcCCCcceeccchhHHH
Q 022504 172 RLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVA 251 (296)
Q Consensus 172 ~~~~~~~~~~~~G~ll~l~aa~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (296)
+.+..+..|..+.+.++.||+.|++..||..+..+ ...-+...+.++++..+|+...... + ... .+ .....
T Consensus 141 ----~~~~lDp~Gv~~Al~AG~~Wa~YIv~G~r~g~~~~-g~~g~a~gm~vAaviv~Pig~~~ag-~-~l~-~p-~ll~l 211 (292)
T COG5006 141 ----SVWSLDPVGVALALGAGACWALYIVLGQRAGRAEH-GTAGVAVGMLVAALIVLPIGAAQAG-P-ALF-SP-SLLPL 211 (292)
T ss_pred ----CcCcCCHHHHHHHHHHhHHHHHHHHHcchhcccCC-CchHHHHHHHHHHHHHhhhhhhhcc-h-hhc-Ch-HHHHH
Confidence 12234578999999999999999999999876554 3455688889999999998763221 1 111 11 12344
Q ss_pred HHHHHHhhhHHHHHHHHHHHhcCCceee--ecccccHH-HHHHhh
Q 022504 252 VLYSLLALGFELACAHGACRELDLFMYQ--CSSPWPLS-SLLSWM 293 (296)
Q Consensus 252 lly~gv~~t~~ay~l~~~~l~~~g~~~~--~s~~~p~~-~l~~~~ 293 (296)
-+-.++++|.+.|.+-..+++|.++... .-++||.. ++-+|.
T Consensus 212 aLgvavlSSalPYsLEmiAL~rlp~~~F~~LlSLePa~aAl~G~i 256 (292)
T COG5006 212 ALGVAVLSSALPYSLEMIALRRLPARTFGTLLSLEPALAALSGLI 256 (292)
T ss_pred HHHHHHHhcccchHHHHHHHhhCChhHHHHHHHhhHHHHHHHHHH
Confidence 5678899999999999999999887652 22366776 466664
No 17
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=99.53 E-value=3.9e-12 Score=111.74 Aligned_cols=232 Identities=12% Similarity=0.029 Sum_probs=167.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcCCC--C-CCCHHHHHHHHHHHHHH
Q 022504 10 AALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSER--P-QLTFSILCSFFLLSVFG 86 (296)
Q Consensus 10 ~~~~~l~l~~~~~~wg~~~i~~K~~~~~~~~p~~~~~~R~~~A~l~l~~~~~~~~r~~~--~-~~~~~~~~~~~~~g~~g 86 (296)
..|+++..+.+.++||..+...|.. + ..|+.++...|.+-+.+++..+....++.+. . ..++|.+..+...+..-
T Consensus 5 ~~~Gil~~l~Ay~lwG~lp~y~kll-~-~~~~~eIlahRviwS~~~~l~ll~~~r~~~~~~~~~~~p~~~~~~~l~a~li 82 (293)
T COG2962 5 SRKGILLALLAYLLWGLLPLYFKLL-E-PLPATEILAHRVIWSFPFMLALLFLLRQWRELKQLLKQPKTLLMLALTALLI 82 (293)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHH-c-cCCHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhCcHHHHHHHHHHHHH
Confidence 3579999999999999999999986 4 5999999999999999988876554433221 1 12345556666666655
Q ss_pred HHHHHHHHHHhhccCchhhhhhcchhhHHHHHHHHHHhhcccccccccccchhhhHHHhhhhhhhhhhccCCCCcCCCCC
Q 022504 87 CSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSH 166 (296)
Q Consensus 87 ~~~~~~~~~gl~~tsa~~asil~~~~Pv~~~ils~~~~~E~~~~~~~~~~~~~iG~~l~~~G~~ll~~~~g~~~~~~~~~ 166 (296)
..+...+.++.+.-..-++|.=.+..|++.++++.+++|||+++- |++++.++.+|+.......|.
T Consensus 83 ~~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~------Q~iAV~lA~~GV~~~~~~~g~-------- 148 (293)
T COG2962 83 GLNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRL------QWIAVGLAAAGVLIQTWLLGS-------- 148 (293)
T ss_pred HHHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHH------HHHHHHHHHHHHHHHHHHcCC--------
Confidence 889999999999999999999999999999999999999998655 699999999999887743221
Q ss_pred CCCCCcccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHhcCCCcceeccc
Q 022504 167 SGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLD 246 (296)
Q Consensus 167 ~~~~~~~~~~~~~~~~~G~ll~l~aa~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~ 246 (296)
..+ ..+.=|++|++|..+-|+. +- + +.+-.+.-++.-..+.+.+....+++++-.....+
T Consensus 149 ------------lpw-----val~la~sf~~Ygl~RK~~-~v-~-a~~g~~lE~l~l~p~al~yl~~l~~~~~~~~~~~~ 208 (293)
T COG2962 149 ------------LPW-----VALALALSFGLYGLLRKKL-KV-D-ALTGLTLETLLLLPVALIYLLFLADSGQFLQQNAN 208 (293)
T ss_pred ------------CcH-----HHHHHHHHHHHHHHHHHhc-CC-c-hHHhHHHHHHHHhHHHHHHHHHHhcCchhhhcCCc
Confidence 122 3456689999999874333 22 2 23333444444445555555544443320111222
Q ss_pred hhHHHHHHHHHhhhHHHHHHHHHHHhcCCcee
Q 022504 247 IGLVAVLYSLLALGFELACAHGACRELDLFMY 278 (296)
Q Consensus 247 ~~~~~lly~gv~~t~~ay~l~~~~l~~~g~~~ 278 (296)
..+.-++..|+ .|+++-.++..+-|++.-+.
T Consensus 209 ~~~~LLv~aG~-vTavpL~lf~~aa~~lpls~ 239 (293)
T COG2962 209 SLWLLLVLAGL-VTAVPLLLFAAAAKRLPLST 239 (293)
T ss_pred hHHHHHHHhhH-HHHHHHHHHHHHHhcCCHHH
Confidence 33566677887 69999999999999976554
No 18
>COG2510 Predicted membrane protein [Function unknown]
Probab=99.50 E-value=3.4e-13 Score=104.15 Aligned_cols=134 Identities=13% Similarity=0.151 Sum_probs=117.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCC-CCCHHHHHHHHHHHHHHHHHHH
Q 022504 13 PSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERP-QLTFSILCSFFLLSVFGCSSQI 91 (296)
Q Consensus 13 ~~l~l~~~~~~wg~~~i~~K~~~~~~~~p~~~~~~R~~~A~l~l~~~~~~~~r~~~~-~~~~~~~~~~~~~g~~g~~~~~ 91 (296)
..++.++++++||...++.|+.++ ++||-.-.+.|-....+++..+....++.+.+ ..+.|.+..+.+-|+.+.....
T Consensus 4 ~~~~ALLsA~fa~L~~iF~KIGl~-~vdp~~At~IRtiVi~~~l~~v~~~~g~~~~~~~~~~k~~lflilSGla~glswl 82 (140)
T COG2510 4 AIIYALLSALFAGLTPIFAKIGLE-GVDPDFATTIRTIVILIFLLIVLLVTGNWQAGGEIGPKSWLFLILSGLAGGLSWL 82 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcc-ccCccHHHHHHHHHHHHHHHHHHHhcCceecccccCcceehhhhHHHHHHHHHHH
Confidence 567889999999999999999987 69999999999999999988887765443322 3567778888888877789999
Q ss_pred HHHHHhhccCchhhhhhcchhhHHHHHHHHHHhhcccccccccccchhhhHHHhhhhhhhhh
Q 022504 92 FSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVT 153 (296)
Q Consensus 92 ~~~~gl~~tsa~~asil~~~~Pv~~~ils~~~~~E~~~~~~~~~~~~~iG~~l~~~G~~ll~ 153 (296)
+||.++|..+++...-+-.+.|++++++++++++||++.+ +++|+.+..+|++++.
T Consensus 83 ~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~------~~iG~~LI~~Gailvs 138 (140)
T COG2510 83 LYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLP------TWIGIVLIVIGAILVS 138 (140)
T ss_pred HHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHH------HHHHHHHHHhCeeeEe
Confidence 9999999999999999999999999999999999999877 5899999999998764
No 19
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=99.38 E-value=4e-10 Score=102.63 Aligned_cols=247 Identities=15% Similarity=0.096 Sum_probs=168.8
Q ss_pred HHHHHHHHHHh-CCCC--hHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCc
Q 022504 26 SNMEVIKAAMS-KGIN--KYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFGCSSQIFSFVGIQYSSP 102 (296)
Q Consensus 26 ~~~i~~K~~~~-~~~~--p~~~~~~R~~~A~l~l~~~~~~~~r~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~gl~~tsa 102 (296)
.+.+.-+.... .+.. |..+.+..+....++-.+.....++++.++.+ ++.....+++..+...+.+.+++|.|.
T Consensus 14 ~~g~~qE~i~~~~~~~~~~~~lt~~q~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~al~~i~~ 90 (303)
T PF08449_consen 14 SYGILQEKIMTTPYGSPFPLFLTFVQFAFNALFSFILLSLFKFPKSRKIP---LKKYAILSFLFFLASVLSNAALKYISY 90 (303)
T ss_pred HHHHHHHHHHcCCCCCcccHHHHHHHHHHHHHHHHHHHHhccccCCCcCh---HHHHHHHHHHHHHHHHHHHHHHHhCCh
Confidence 34455555444 2344 88999999999888766654433212222223 446677788788888999999999999
Q ss_pred hhhhhhcchhhHHHHHHHHHHhhcccccccccccchhhhHHHhhhhhhhhhhccCCCCcCCCCCCCCCCcccCCCCCchh
Q 022504 103 TLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWI 182 (296)
Q Consensus 103 ~~asil~~~~Pv~~~ils~~~~~E~~~~~~~~~~~~~iG~~l~~~G~~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (296)
..-.++-+..|+.+++++.+++|+|.+++ |++++++..+|+++....+...... .+....+..
T Consensus 91 p~~~~~ks~~~i~vmi~~~l~~~k~y~~~------~~~~v~li~~Gv~~~~~~~~~~~~~-----------~~~~~~~~~ 153 (303)
T PF08449_consen 91 PTQIVFKSSKPIPVMILGVLILGKRYSRR------QYLSVLLITIGVAIFTLSDSSSSSS-----------SNSSSFSSA 153 (303)
T ss_pred HHHHHHhhhHHHHHHHHHHHhcCccccHH------HHHHHHHHHhhHheeeecccccccc-----------cccccccch
Confidence 99999999999999999999999987655 6999999999998877543211100 011112223
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcc-hhHHHHHHHHHHHHHHHHHHHHH--HhcCCCcce--eccchhHHHHHHHHH
Q 022504 183 LGGFFLAAEAFMNSAWFILQALILRKFA-AVLIIMFYLFFFNTILSTAFALI--VVSEPSDWK--LGLDIGLVAVLYSLL 257 (296)
Q Consensus 183 ~G~ll~l~aa~~~a~~~v~~k~~~~~~~-~~~~~~~~~~~~g~i~~~~~~~~--~~~~~~~~~--~~~~~~~~~lly~gv 257 (296)
.|+++.+.+.++.+...+.+||..++++ ++....++...++.+...+.... .++....+. ...+..+..++...+
T Consensus 154 ~G~~ll~~sl~~~a~~~~~qe~~~~~~~~~~~~~mfy~n~~~~~~~~~~~~~l~~~~~~~~~~f~~~~p~~~~~l~~~s~ 233 (303)
T PF08449_consen 154 LGIILLLLSLLLDAFTGVYQEKLFKKYGKSPWELMFYTNLFSLPFLLILLFLLPTGEFRSAIRFISAHPSVLLYLLLFSL 233 (303)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhHHHHHHHHHHHH
Confidence 4999999999999999999999988875 45678888999998888877766 222111111 111123344444444
Q ss_pred hhhHHHHHHHHHHHhcCCceeeecccccHHHHHHhhh
Q 022504 258 ALGFELACAHGACRELDLFMYQCSSPWPLSSLLSWMS 294 (296)
Q Consensus 258 ~~t~~ay~l~~~~l~~~g~~~~~s~~~p~~~l~~~~~ 294 (296)
...++....++.+++.||.. .+....+.-.++++.
T Consensus 234 -~~~~g~~~i~~~~~~~~al~-~t~v~t~Rk~~sill 268 (303)
T PF08449_consen 234 -TGALGQFFIFYLIKKFSALT-TTIVTTLRKFLSILL 268 (303)
T ss_pred -HHHHHHHHHHHHHHhcCchh-hhhHHHHHHHHHHHH
Confidence 45666667778899999987 666665554444443
No 20
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=99.36 E-value=1.4e-11 Score=111.35 Aligned_cols=192 Identities=18% Similarity=0.187 Sum_probs=134.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCchhhhhhcchhhHHHHHHHHHHhhcccccccccccchhhhHHHhhhhhhhhhhccCC
Q 022504 79 FFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGP 158 (296)
Q Consensus 79 ~~~~g~~g~~~~~~~~~gl~~tsa~~asil~~~~Pv~~~ils~~~~~E~~~~~~~~~~~~~iG~~l~~~G~~ll~~~~g~ 158 (296)
.+....+-...+.++..++++|+++..+++.++.-+||..++.++..||+++. |.+++.+++.|+++++..+..
T Consensus 162 sl~fc~lWF~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~s------Kllav~~si~GViiVt~~~s~ 235 (416)
T KOG2765|consen 162 SLFFCPLWFLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLS------KLLAVFVSIAGVIIVTMGDSK 235 (416)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHH------HHHHHHHhhccEEEEEecccc
Confidence 33444444778889999999999999999999999999999999999999876 799999999999998854321
Q ss_pred CCcCCCCCCCCCCcccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcchh---HHHHHHHHHHHHHHHHHHHHHHh
Q 022504 159 PLIGELSHSGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFAAV---LIIMFYLFFFNTILSTAFALIVV 235 (296)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~G~ll~l~aa~~~a~~~v~~k~~~~~~~~~---~~~~~~~~~~g~i~~~~~~~~~~ 235 (296)
.. + +........|+++++++|+.||.|+++.||...+.++. ..+..+.-++..+++-|...+..
T Consensus 236 ~~----~---------~~~a~~~llG~llaL~sA~~YavY~vllk~~~~~eg~rvdi~lffGfvGLfnllllwP~l~iL~ 302 (416)
T KOG2765|consen 236 QN----S---------DLPASRPLLGNLLALLSALLYAVYTVLLKRKIGDEGERVDIQLFFGFVGLFNLLLLWPPLIILD 302 (416)
T ss_pred cc----c---------cCCccchhHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 10 0 12224467999999999999999999999976665211 11122222233333333333322
Q ss_pred cC-CCcceeccchhHHHHHHHHHhhhHHHHHHHHHHHhcCCceee---ecccccHHHH
Q 022504 236 SE-PSDWKLGLDIGLVAVLYSLLALGFELACAHGACRELDLFMYQ---CSSPWPLSSL 289 (296)
Q Consensus 236 ~~-~~~~~~~~~~~~~~lly~gv~~t~~ay~l~~~~l~~~g~~~~---~s~~~p~~~l 289 (296)
.. ...+..+.+.+...+++.+.++|+++-++|.+++--.+|... .+.-.|+..+
T Consensus 303 ~~~~e~F~lP~~~q~~~vv~~~ligtvvSDylW~~a~~lTs~Lv~TlgmSltIPLA~~ 360 (416)
T KOG2765|consen 303 FFGEERFELPSSTQFSLVVFNNLIGTVVSDYLWAKAVLLTSPLVVTLGMSLTIPLAMF 360 (416)
T ss_pred HhccCcccCCCCceeEeeeHhhHHHHHHHHHHHHHHHHhccchhheeeeeEeeeHHHH
Confidence 11 112333333455677888999999999999999999888652 2334577643
No 21
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=99.34 E-value=6.6e-13 Score=114.75 Aligned_cols=241 Identities=15% Similarity=0.126 Sum_probs=155.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcCC-CCCCCHHHHHHHHHHHHHHHHHH
Q 022504 12 LPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSE-RPQLTFSILCSFFLLSVFGCSSQ 90 (296)
Q Consensus 12 ~~~l~l~~~~~~wg~~~i~~K~~~~~~~~p~~~~~~R~~~A~l~l~~~~~~~~r~~-~~~~~~~~~~~~~~~g~~g~~~~ 90 (296)
++.+++.++ ..+.++.++.|..+ +.||.+....|++.-.++-.|+..+.+..- .|+-.| +++++.|+.|....
T Consensus 38 ~gl~l~~vs-~ff~~~~vv~t~~~--e~~p~e~a~~r~l~~mlit~pcliy~~~~v~gp~g~R---~~LiLRg~mG~tgv 111 (346)
T KOG4510|consen 38 LGLLLLTVS-YFFNSCMVVSTKVL--ENDPMELASFRLLVRMLITYPCLIYYMQPVIGPEGKR---KWLILRGFMGFTGV 111 (346)
T ss_pred cCceehhhH-HHHhhHHHhhhhhh--ccChhHhhhhhhhhehhhhheEEEEEeeeeecCCCcE---EEEEeehhhhhhHH
Confidence 445555555 55655555555554 379999999998777777666654432211 122222 36778899996667
Q ss_pred HHHHHHhhccCchhhhhhcchhhHHHHHHHHHHhhcccccccccccchhhhHHHhhhhhhhhhhccCCCCcCCCCCCCCC
Q 022504 91 IFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSP 170 (296)
Q Consensus 91 ~~~~~gl~~tsa~~asil~~~~Pv~~~ils~~~~~E~~~~~~~~~~~~~iG~~l~~~G~~ll~~~~g~~~~~~~~~~~~~ 170 (296)
...|++++|.+-++|+++..+.|++|.++++.++|||.+ ..+.+|..+.+.|+++++-. |...+..+
T Consensus 112 mlmyya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t------~~eaL~s~itl~GVVLIvRP--pFlFG~~t----- 178 (346)
T KOG4510|consen 112 MLMYYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFT------KFEALGSLITLLGVVLIVRP--PFLFGDTT----- 178 (346)
T ss_pred HHHHHHHhhcchhheEEEEecChHHHHHHHHHHHcCCCc------HHHHHHHHHhhheEEEEecC--CcccCCCc-----
Confidence 788899999999999999999999999999999999965 45799999999999998721 11111100
Q ss_pred CcccCCCC-CchhHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHhcCCCcceecc-chh
Q 022504 171 RRLLLSPQ-LSWILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGL-DIG 248 (296)
Q Consensus 171 ~~~~~~~~-~~~~~G~ll~l~aa~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~-~~~ 248 (296)
++.++++ +....|....+.+++.-|--.++.|++.|+.+.-.++ .+..+++.+...+.....+ .|+.+. ..+
T Consensus 179 -~g~~~s~~~~~~~gt~aai~s~lf~asvyIilR~iGk~~h~~msv-syf~~i~lV~s~I~~~~ig----~~~lP~cgkd 252 (346)
T KOG4510|consen 179 -EGEDSSQVEYDIPGTVAAISSVLFGASVYIILRYIGKNAHAIMSV-SYFSLITLVVSLIGCASIG----AVQLPHCGKD 252 (346)
T ss_pred -cccccccccccCCchHHHHHhHhhhhhHHHHHHHhhccccEEEEe-hHHHHHHHHHHHHHHhhcc----ceecCccccc
Confidence 0012222 3456788889999988888888888887876422222 3333445444444332222 122111 013
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHhc--CCcee
Q 022504 249 LVAVLYSLLALGFELACAHGACREL--DLFMY 278 (296)
Q Consensus 249 ~~~lly~gv~~t~~ay~l~~~~l~~--~g~~~ 278 (296)
|+-++.+|++ ..+..++-..++++ .||..
T Consensus 253 r~l~~~lGvf-gfigQIllTm~lQiErAGpva 283 (346)
T KOG4510|consen 253 RWLFVNLGVF-GFIGQILLTMGLQIERAGPVA 283 (346)
T ss_pred eEEEEEehhh-hhHHHHHHHHHhhhhccCCee
Confidence 5556677874 56777777776654 55554
No 22
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=99.30 E-value=9.1e-11 Score=103.99 Aligned_cols=132 Identities=12% Similarity=0.111 Sum_probs=111.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHhCCCCh--HHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHH
Q 022504 9 RAALPSVGMVIVLLAQVSNMEVIKAAMSKGINK--YVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFG 86 (296)
Q Consensus 9 ~~~~~~l~l~~~~~~wg~~~i~~K~~~~~~~~p--~~~~~~R~~~A~l~l~~~~~~~~r~~~~~~~~~~~~~~~~~g~~g 86 (296)
.+.++....++++++|+...+..|...+ +.|| ..+..+|+.++.+++.++....+++ +..+.+++...+..+.++
T Consensus 125 ~~~~G~~~~l~a~~~~a~~~~~~k~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 201 (260)
T TIGR00950 125 INPAGLLLGLGSGISFALGTVLYKRLVK-KEGPELLQFTGWVLLLGALLLLPFAWFLGPN--PQALSLQWGALLYLGLIG 201 (260)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHhHHhh-cCCchHHHHHHHHHHHHHHHHHHHHHhcCCC--CCcchHHHHHHHHHHHHH
Confidence 4567999999999999999999999875 4664 4555578999999988876653322 233667777788899988
Q ss_pred -HHHHHHHHHHhhccCchhhhhhcchhhHHHHHHHHHHhhcccccccccccchhhhHHHhhhhh
Q 022504 87 -CSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGA 149 (296)
Q Consensus 87 -~~~~~~~~~gl~~tsa~~asil~~~~Pv~~~ils~~~~~E~~~~~~~~~~~~~iG~~l~~~G~ 149 (296)
...+.++++++++.++++++.+.++.|+++.++++++++||++.+ +++|..+.+.|+
T Consensus 202 ~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~------~~~G~~li~~g~ 259 (260)
T TIGR00950 202 TALAYFLWNKGLTLVDPSAASILALAEPLVALLLGLLILGETLSLP------QLIGGALIIAAV 259 (260)
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHhc
Confidence 889999999999999999999999999999999999999998766 589999998886
No 23
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=99.21 E-value=3.5e-11 Score=93.63 Aligned_cols=102 Identities=22% Similarity=0.357 Sum_probs=83.7
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCC--CCCCHHHHHHHHHHHHHH-HHHHHHHHHHhhccCchhhhhhcchhhHHHHHHHHH
Q 022504 46 VYSDALSSLFFLFCSFLFHRSER--PQLTFSILCSFFLLSVFG-CSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAII 122 (296)
Q Consensus 46 ~~R~~~A~l~l~~~~~~~~r~~~--~~~~~~~~~~~~~~g~~g-~~~~~~~~~gl~~tsa~~asil~~~~Pv~~~ils~~ 122 (296)
.+|+..+.+++..+...++|.++ +..+++++.+....|.++ ..++.++++|+++++ +.++.+.++.|+++.+++.+
T Consensus 2 a~r~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~~~-~~v~~i~~~~pi~~~ll~~~ 80 (113)
T PF13536_consen 2 AFRYLFSVLFLLIILLIRGRLRDLFRALRRKPWLWLILAGLLGFGVAYLLFFYALSYAP-ALVAAIFSLSPIFTALLSWL 80 (113)
T ss_pred HHHHHHHHHHHHHHHHHHccHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHH
Confidence 68999999998888766433211 123345566777788888 699999999999999 58889999999999999999
Q ss_pred HhhcccccccccccchhhhHHHhhhhhhhhhh
Q 022504 123 FRLEKLNWENKSSQAKSLGTFASIGGAFVVTF 154 (296)
Q Consensus 123 ~~~E~~~~~~~~~~~~~iG~~l~~~G~~ll~~ 154 (296)
++|||++++ +++|+.++++|++++..
T Consensus 81 ~~~er~~~~------~~~a~~l~~~Gv~li~~ 106 (113)
T PF13536_consen 81 FFKERLSPR------RWLAILLILIGVILIAW 106 (113)
T ss_pred HhcCCCCHH------HHHHHHHHHHHHHHHhh
Confidence 999998776 58999999999999874
No 24
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=99.00 E-value=1.2e-08 Score=92.43 Aligned_cols=136 Identities=15% Similarity=0.022 Sum_probs=112.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHH-HH
Q 022504 10 AALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFG-CS 88 (296)
Q Consensus 10 ~~~~~l~l~~~~~~wg~~~i~~K~~~~~~~~p~~~~~~R~~~A~l~l~~~~~~~~r~~~~~~~~~~~~~~~~~g~~g-~~ 88 (296)
+.++.+..+.++++|+...+..|..- . -++.....+++.++++.+.++....+.......+.+++..++..|+++ ..
T Consensus 148 ~~~G~l~~l~a~~~~a~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~i~~s~~ 225 (292)
T PRK11272 148 NPWGAILILIASASWAFGSVWSSRLP-L-PVGMMAGAAEMLAAGVVLLIASLLSGERLTALPTLSGFLALGYLAVFGSII 225 (292)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhcC-C-CcchHHHHHHHHHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHHHHHH
Confidence 45688999999999999999999853 2 345667788999998888877654322111123567788888899988 88
Q ss_pred HHHHHHHHhhccCchhhhhhcchhhHHHHHHHHHHhhcccccccccccchhhhHHHhhhhhhhhh
Q 022504 89 SQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVT 153 (296)
Q Consensus 89 ~~~~~~~gl~~tsa~~asil~~~~Pv~~~ils~~~~~E~~~~~~~~~~~~~iG~~l~~~G~~ll~ 153 (296)
.+.++++++++.++++++.+.++.|++..++++++++|+++.. +++|..+.+.|++++.
T Consensus 226 ~~~l~~~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~------~iiG~~lIi~gv~~~~ 284 (292)
T PRK11272 226 AISAYMYLLRNVRPALATSYAYVNPVVAVLLGTGLGGETLSPI------EWLALGVIVFAVVLVT 284 (292)
T ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHH------HHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999998766 5999999999998875
No 25
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=98.96 E-value=2.3e-08 Score=90.60 Aligned_cols=136 Identities=14% Similarity=0.059 Sum_probs=109.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHH-HH
Q 022504 10 AALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFG-CS 88 (296)
Q Consensus 10 ~~~~~l~l~~~~~~wg~~~i~~K~~~~~~~~p~~~~~~R~~~A~l~l~~~~~~~~r~~~~~~~~~~~~~~~~~g~~g-~~ 88 (296)
+..+.+..+.+++.|+...+..|...+ +.+|....... .++++++.++...... ....++..+...+.+|+++ ..
T Consensus 146 ~~~G~ll~l~aa~~~a~~~v~~r~~~~-~~~~~~~~~~~-~~~~~~l~~~~~~~~~--~~~~~~~~~~~~l~lgv~~t~~ 221 (293)
T PRK10532 146 DLTGAALALGAGACWAIYILSGQRAGA-EHGPATVAIGS-LIAALIFVPIGALQAG--EALWHWSILPLGLAVAILSTAL 221 (293)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHhc-cCCchHHHHHH-HHHHHHHHHHHHHccC--cccCCHHHHHHHHHHHHHHHHH
Confidence 356889999999999999999999754 57888775544 5566666666554322 1223455555667889988 88
Q ss_pred HHHHHHHHhhccCchhhhhhcchhhHHHHHHHHHHhhcccccccccccchhhhHHHhhhhhhhhhhc
Q 022504 89 SQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFY 155 (296)
Q Consensus 89 ~~~~~~~gl~~tsa~~asil~~~~Pv~~~ils~~~~~E~~~~~~~~~~~~~iG~~l~~~G~~ll~~~ 155 (296)
.+.++++++++.++++++.+.+++|++..++++++++|+++.. +++|..+.+.|++.....
T Consensus 222 ~~~l~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~------~~iG~~lIl~~~~~~~~~ 282 (293)
T PRK10532 222 PYSLEMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLI------QWLALGAIIAASMGSTLT 282 (293)
T ss_pred HHHHHHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHH------HHHHHHHHHHHHHHHHhc
Confidence 8999999999999999999999999999999999999998766 599999999999887643
No 26
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=98.90 E-value=2.4e-07 Score=81.74 Aligned_cols=193 Identities=13% Similarity=0.124 Sum_probs=127.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhhccCchhhhhhcchhhHHHHHHHHHHhhcccccccccccchhhhHHHhhhhhhh
Q 022504 72 TFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFV 151 (296)
Q Consensus 72 ~~~~~~~~~~~g~~g~~~~~~~~~gl~~tsa~~asil~~~~Pv~~~ils~~~~~E~~~~~~~~~~~~~iG~~l~~~G~~l 151 (296)
++||...+.+=+++....+.+.+.++++.+|+.-.++.++-.++|.+++.+++|+|++.+ ||+++.+...|+.+
T Consensus 13 ~~~~~~~~~vPA~lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~------qW~aL~lL~~Gv~l 86 (244)
T PF04142_consen 13 SPKDTLKLAVPALLYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRR------QWLALFLLVAGVVL 86 (244)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchh------hHHHHHHHHHHHhe
Confidence 456777777777777888899999999999999999999999999999999999998776 58999999999988
Q ss_pred hhhccCCCCcCCCCCCCCCCcccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcchh-HHHHHHHHHHHHHHHHHH
Q 022504 152 VTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFAAV-LIIMFYLFFFNTILSTAF 230 (296)
Q Consensus 152 l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~G~ll~l~aa~~~a~~~v~~k~~~~~~~~~-~~~~~~~~~~g~i~~~~~ 230 (296)
+...+....... +..+.+ .+....+...|.++.+.++++-++..+..+|..|+.+.+ ...+..-...|.+..++.
T Consensus 87 v~~~~~~~~~~~-~~~~~~---~~~~~~~~~~G~~~vl~~~~~S~~agVy~E~~lK~~~~s~~~~N~qL~~~gi~~~~~~ 162 (244)
T PF04142_consen 87 VQLSSSQSSDNS-SSSSVH---HDASNQNPLLGLLAVLAAAFLSGFAGVYFEKLLKRSNVSLWIQNMQLYLFGILFNLLA 162 (244)
T ss_pred eecCCccccccc-cccccc---cccccchhHhHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHH
Confidence 753322110000 000000 011123457899999999999999999999999986433 344555555666655554
Q ss_pred HHHHhcCC-C--cceeccchhHHHHHHHHHhhhHHHHHHHHHHHhcCCcee
Q 022504 231 ALIVVSEP-S--DWKLGLDIGLVAVLYSLLALGFELACAHGACRELDLFMY 278 (296)
Q Consensus 231 ~~~~~~~~-~--~~~~~~~~~~~~lly~gv~~t~~ay~l~~~~l~~~g~~~ 278 (296)
....+.+. . +.-..++ ...+..++...++=.+-...+|+.+...
T Consensus 163 ~~~~~~~~~~~~g~f~G~~----~~~~~~i~~~a~gGllva~v~KyadnI~ 209 (244)
T PF04142_consen 163 LLLSDGSAISESGFFHGYS----WWVWIVIFLQAIGGLLVAFVLKYADNIV 209 (244)
T ss_pred HhcccccccccCCchhhcc----hHHHHHHHHHHHhhHHHHHHHHHHhHHH
Confidence 33322221 1 1111111 1223334445555556666777766543
No 27
>PRK11689 aromatic amino acid exporter; Provisional
Probab=98.84 E-value=7.8e-08 Score=87.24 Aligned_cols=132 Identities=16% Similarity=0.117 Sum_probs=101.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHH
Q 022504 11 ALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFGCSSQ 90 (296)
Q Consensus 11 ~~~~l~l~~~~~~wg~~~i~~K~~~~~~~~p~~~~~~R~~~A~l~l~~~~~~~~r~~~~~~~~~~~~~~~~~g~~g~~~~ 90 (296)
..+.++++.++++|+...+..|...+ +.||..... ..+.+.+.+.... ........+.+.+..++..|+.....+
T Consensus 155 ~~G~~~~l~aa~~~A~~~v~~k~~~~-~~~~~~~~~---~~~~~~l~~~~~~-~~~~~~~~~~~~~~~l~~~~~~t~~~~ 229 (295)
T PRK11689 155 PLSYGLAFIGAFIWAAYCNVTRKYAR-GKNGITLFF---ILTALALWIKYFL-SPQPAMVFSLPAIIKLLLAAAAMGFGY 229 (295)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhccC-CCCchhHHH---HHHHHHHHHHHHH-hcCccccCCHHHHHHHHHHHHHHHHHH
Confidence 45889999999999999999999754 578876532 3334444433322 221112345666777776665337889
Q ss_pred HHHHHHhhccCchhhhhhcchhhHHHHHHHHHHhhcccccccccccchhhhHHHhhhhhhhhh
Q 022504 91 IFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVT 153 (296)
Q Consensus 91 ~~~~~gl~~tsa~~asil~~~~Pv~~~ils~~~~~E~~~~~~~~~~~~~iG~~l~~~G~~ll~ 153 (296)
.++++++++.++++++.+.++.|++..++++++++|+++.. +++|.++.+.|+++..
T Consensus 230 ~l~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~------~~iG~~lI~~gv~~~~ 286 (295)
T PRK11689 230 AAWNVGILHGNMTLLATASYFTPVLSAALAALLLSTPLSFS------FWQGVAMVTAGSLLCW 286 (295)
T ss_pred HHHHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHH------HHHHHHHHHHhHHHHh
Confidence 99999999999999999999999999999999999998776 5999999999997764
No 28
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=98.77 E-value=2.4e-07 Score=86.19 Aligned_cols=137 Identities=11% Similarity=0.124 Sum_probs=102.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhCCCCh-HHHHHHHHHHHHHHHHHHHHHhhcCCC----CCCCHHHHHHHHHHHHHH
Q 022504 12 LPSVGMVIVLLAQVSNMEVIKAAMSKGINK-YVIIVYSDALSSLFFLFCSFLFHRSER----PQLTFSILCSFFLLSVFG 86 (296)
Q Consensus 12 ~~~l~l~~~~~~wg~~~i~~K~~~~~~~~p-~~~~~~R~~~A~l~l~~~~~~~~r~~~----~~~~~~~~~~~~~~g~~g 86 (296)
.+.+.++.++++|+...+..|...+. ++| ....++...++++.+.+.....++... ...+.. ...++..++..
T Consensus 189 lG~~l~l~aa~~wa~~~il~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~i~y~~i~t 266 (358)
T PLN00411 189 IGGALLTIQGIFVSVSFILQAHIMSE-YPAAFTVSFLYTVCVSIVTSMIGLVVEKNNPSVWIIHFDIT-LITIVTMAIIT 266 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-cCcHhHHHHHHHHHHHHHHHHHHHHHccCCcccceeccchH-HHHHHHHHHHH
Confidence 36788889999999999999987664 654 466777777777766655554333211 112222 22233344433
Q ss_pred HHHHHHHHHHhhccCchhhhhhcchhhHHHHHHHHHHhhcccccccccccchhhhHHHhhhhhhhhhhcc
Q 022504 87 CSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYK 156 (296)
Q Consensus 87 ~~~~~~~~~gl~~tsa~~asil~~~~Pv~~~ils~~~~~E~~~~~~~~~~~~~iG~~l~~~G~~ll~~~~ 156 (296)
.+.+.++++++++.+|+.++++.++.|++++++++++++|++++. +++|.++.+.|+++....+
T Consensus 267 ~lay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~------~~iG~~LIl~Gv~l~~~~~ 330 (358)
T PLN00411 267 SVYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLG------CLIGGILITLGFYAVMWGK 330 (358)
T ss_pred HHHHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHH------HHHHHHHHHHHHHHHHhhh
Confidence 567888999999999999999999999999999999999999877 5899999999998876543
No 29
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=98.73 E-value=9.7e-08 Score=85.96 Aligned_cols=134 Identities=15% Similarity=0.035 Sum_probs=92.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhCCCChH----HHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHH
Q 022504 10 AALPSVGMVIVLLAQVSNMEVIKAAMSKGINKY----VIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVF 85 (296)
Q Consensus 10 ~~~~~l~l~~~~~~wg~~~i~~K~~~~~~~~p~----~~~~~R~~~A~l~l~~~~~~~~r~~~~~~~~~~~~~~~~~g~~ 85 (296)
+.++....+.++++|+...+..|...+ +.+|. ....+.+.+.++.+.+....++++ ....+..........+.+
T Consensus 142 ~~~g~~~~l~aal~~a~~~i~~k~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 219 (281)
T TIGR03340 142 RRKAYAWALAAALGTAIYSLSDKAAAL-GVPAFYSALGYLGIGFLAMGWPFLLLYLKRHGR-SMFPYARQILPSATLGGL 219 (281)
T ss_pred chhHHHHHHHHHHHHHHhhhhcccccc-chhcccccHHHHHHHHHHHHHHHHHHHHHHhcc-chhhhHHHHHHHHHHHHH
Confidence 346777788899999999999997533 34443 223333333322222222211211 111122233444556666
Q ss_pred H-HHHHHHHHHHhhccCchhhhhhcchhhHHHHHHHHHHhhcccccccccccchhhhHHHhhhhhhh
Q 022504 86 G-CSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFV 151 (296)
Q Consensus 86 g-~~~~~~~~~gl~~tsa~~asil~~~~Pv~~~ils~~~~~E~~~~~~~~~~~~~iG~~l~~~G~~l 151 (296)
. ...+.++++++++.+++.++.+.++.|++..++++++++|+++.+ +++|..+.+.|+++
T Consensus 220 ~s~l~~~l~~~al~~~~a~~~~~~~~l~pv~a~l~g~~~lgE~~~~~------~~iG~~lil~Gv~l 280 (281)
T TIGR03340 220 MIGGAYALVLWAMTRLPVATVVALRNTSIVFAVVLGIWFLNERWYLT------RLMGVCIIVAGLVV 280 (281)
T ss_pred HHHHHHHHHHHHHhhCCceEEEeecccHHHHHHHHHHHHhCCCccHH------HHHHHHHHHHhHHh
Confidence 6 788999999999999999999999999999999999999998766 59999999999865
No 30
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=98.71 E-value=7.1e-07 Score=81.08 Aligned_cols=137 Identities=15% Similarity=0.136 Sum_probs=104.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHHHHHHHHHHhhcCC-----CCCCCHHHHHHHHH
Q 022504 10 AALPSVGMVIVLLAQVSNMEVIKAAMSKGIN---KYVIIVYSDALSSLFFLFCSFLFHRSE-----RPQLTFSILCSFFL 81 (296)
Q Consensus 10 ~~~~~l~l~~~~~~wg~~~i~~K~~~~~~~~---p~~~~~~R~~~A~l~l~~~~~~~~r~~-----~~~~~~~~~~~~~~ 81 (296)
+..+.++.+.++++|+...+..|...++ .+ ......+-..++.+.+.......+... ....+.+++..++.
T Consensus 141 ~~~G~~l~l~aal~~a~~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 219 (299)
T PRK11453 141 AMLGFMLTLAAAFSWACGNIFNKKIMSH-STRPAVMSLVVWSALIPIIPFFVASLILDGSATMIHSLVTIDMTTILSLMY 219 (299)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcc-cCccchhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhccCCHHHHHHHHH
Confidence 3468899999999999999999986543 33 233334444444443333333222211 11345677888899
Q ss_pred HHHHH-HHHHHHHHHHhhccCchhhhhhcchhhHHHHHHHHHHhhcccccccccccchhhhHHHhhhhhhhhh
Q 022504 82 LSVFG-CSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVT 153 (296)
Q Consensus 82 ~g~~g-~~~~~~~~~gl~~tsa~~asil~~~~Pv~~~ils~~~~~E~~~~~~~~~~~~~iG~~l~~~G~~ll~ 153 (296)
+|+++ ...+.+++.++++.++++++.+.++.|++..++++++++|+++.. +++|..+.++|+.+..
T Consensus 220 l~i~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~------~~iG~~lI~~gv~l~~ 286 (299)
T PRK11453 220 LAFVATIVGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGL------QFLGAVLIMAGLYINV 286 (299)
T ss_pred HHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHH------HHHHHHHHHHHHHHHh
Confidence 99999 889999999999999999999999999999999999999998776 5999999999998764
No 31
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=98.71 E-value=5.8e-07 Score=73.10 Aligned_cols=133 Identities=17% Similarity=0.253 Sum_probs=109.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhC------CCChHHHHHHHHHHHHHHHHHHHHHhhcCCC----CCC-------CHHH
Q 022504 13 PSVGMVIVLLAQVSNMEVIKAAMSK------GINKYVIIVYSDALSSLFFLFCSFLFHRSER----PQL-------TFSI 75 (296)
Q Consensus 13 ~~l~l~~~~~~wg~~~i~~K~~~~~------~~~p~~~~~~R~~~A~l~l~~~~~~~~r~~~----~~~-------~~~~ 75 (296)
|....+.+.++-+...+..|..+++ +.||.++..+-...+.+++++.....++.+. ... +.+.
T Consensus 1 G~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 80 (153)
T PF03151_consen 1 GFILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNF 80 (153)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHH
Confidence 3567888999999999999998876 6899999999999999999998877654331 001 1233
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCchhhhhhcchhhHHHHHHHHHHhhcccccccccccchhhhHHHhhhhhhh
Q 022504 76 LCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFV 151 (296)
Q Consensus 76 ~~~~~~~g~~g~~~~~~~~~gl~~tsa~~asil~~~~Pv~~~ils~~~~~E~~~~~~~~~~~~~iG~~l~~~G~~l 151 (296)
+..++..|+++...+...+..++++||.+.++....-.+.+.+++.++++|+++.+ +++|+.+++.|.++
T Consensus 81 ~~~~~~~~~~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~------~~~G~~l~~~G~~~ 150 (153)
T PF03151_consen 81 IFLLILSGLLAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPL------QIIGIVLALVGVLL 150 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHH------HHHHHHHHHHHHhe
Confidence 45555566666888999999999999999999999999999999999999998766 59999999999864
No 32
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=98.70 E-value=1e-07 Score=86.70 Aligned_cols=138 Identities=17% Similarity=0.134 Sum_probs=105.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCC---------CHHHHHH-
Q 022504 10 AALPSVGMVIVLLAQVSNMEVIKAAMSK-GINKYVIIVYSDALSSLFFLFCSFLFHRSERPQL---------TFSILCS- 78 (296)
Q Consensus 10 ~~~~~l~l~~~~~~wg~~~i~~K~~~~~-~~~p~~~~~~R~~~A~l~l~~~~~~~~r~~~~~~---------~~~~~~~- 78 (296)
+..+.+..+.+++.|+...+..|...++ ++||..+..+-..++.+.+.|+....+....... +......
T Consensus 143 ~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (302)
T TIGR00817 143 NWAGFLSAMISNITFVSRNIFSKKAMTIKSLDKTNLYAYISIMSLFLLSPPAFITEGPPFLPHGFMQAISGVNVTKIYTV 222 (302)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHhhcccCchHHHHH
Confidence 4568899999999999999999997652 5899999999999999999998765331110000 0001111
Q ss_pred HHHHHHHH-HHHHHHHHHHhhccCchhhhhhcchhhHHHHHHHHHHhhcccccccccccchhhhHHHhhhhhhhhh
Q 022504 79 FFLLSVFG-CSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVT 153 (296)
Q Consensus 79 ~~~~g~~g-~~~~~~~~~gl~~tsa~~asil~~~~Pv~~~ils~~~~~E~~~~~~~~~~~~~iG~~l~~~G~~ll~ 153 (296)
.+..+... ...+..++.++++++|.++++..+..|+++.++++++++|+++.+ +++|..+.+.|+.+..
T Consensus 223 ~~~~~~~~~~~~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~------~~~G~~lil~Gv~l~~ 292 (302)
T TIGR00817 223 SLVAAMGFFHFYQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQ------QVFGTGIAIAGVFLYS 292 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCchh------HHHHHHHHHHHHHHHH
Confidence 22233322 344467778999999999999999999999999999999999877 5999999999998765
No 33
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=98.68 E-value=1.3e-06 Score=79.32 Aligned_cols=220 Identities=14% Similarity=0.097 Sum_probs=152.6
Q ss_pred HHHHHHh--CCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCchhhhh
Q 022504 30 VIKAAMS--KGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTA 107 (296)
Q Consensus 30 ~~K~~~~--~~~~p~~~~~~R~~~A~l~l~~~~~~~~r~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~gl~~tsa~~asi 107 (296)
..|..++ +--.|..+...++..+.+..........++..+..++..+..++.+|+..+....+...++++.+.+..-.
T Consensus 35 ~nK~il~~~~f~~p~~lt~~~~~~~~l~~~v~~~l~~~~~~~~~~~~~~~~llpl~~~~~~~~v~~n~Sl~~v~VsF~q~ 114 (316)
T KOG1441|consen 35 LNKYILSKYGFPFPITLTMLHLFCGALALLVIKVLKLVPPSKISSKLPLRTLLPLGLVFCISHVLGNVSLSYVPVSFYQT 114 (316)
T ss_pred eeHhhhccCCCCCccHHHHHHHHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHHHHHHHhcchhhhccchhHHHH
Confidence 3788887 33358888888888877776665444322222212334567788899988888999999999999999999
Q ss_pred hcchhhHHHHHHHHHHhhcccccccccccchhhhHHHhhhhhhhhhhccCCCCcCCCCCCCCCCcccCCCCCchhHHHHH
Q 022504 108 MLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFF 187 (296)
Q Consensus 108 l~~~~Pv~~~ils~~~~~E~~~~~~~~~~~~~iG~~l~~~G~~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~G~ll 187 (296)
+=.++|.++.+++.++.+|+.+++. +..++....|+.+-+.. + .+-+..|.+.
T Consensus 115 iKa~~P~~tvl~~~~~~~~~~s~~~------~lsL~piv~GV~ias~~--------------------e-~~fn~~G~i~ 167 (316)
T KOG1441|consen 115 IKALMPPFTVLLSVLLLGKTYSSMT------YLSLLPIVFGVAIASVT--------------------E-LSFNLFGFIS 167 (316)
T ss_pred HHhhcchhHHHHHHHHhCCCCcceE------EEEEEEeeeeEEEeeec--------------------c-ccccHHHHHH
Confidence 9999999999999999999987664 56666777777654321 1 1124689999
Q ss_pred HHHHHHHHHHHHHHHHHHHHh----cchhHHHHHHHHHHHHHHHH-HHHHHHhcCCCc-ce-eccchhHHHHHHHHHhhh
Q 022504 188 LAAEAFMNSAWFILQALILRK----FAAVLIIMFYLFFFNTILST-AFALIVVSEPSD-WK-LGLDIGLVAVLYSLLALG 260 (296)
Q Consensus 188 ~l~aa~~~a~~~v~~k~~~~~----~~~~~~~~~~~~~~g~i~~~-~~~~~~~~~~~~-~~-~~~~~~~~~lly~gv~~t 260 (296)
++++.+..+...+++|+..++ . ++..+..++.-++.+.++ |.....|+.... +. ..++......++.. ++.
T Consensus 168 a~~s~~~~al~~I~~~~ll~~~~~~~-~~~~ll~y~ap~s~~~Ll~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~s-v~~ 245 (316)
T KOG1441|consen 168 AMISNLAFALRNILSKKLLTSKGESL-NSMNLLYYTAPISLIFLLIPFLDYVEGNKFVGFLTAPWFVTFLILLLNS-VLA 245 (316)
T ss_pred HHHHHHHHHHHHHHHHHhhhcccccc-CchHHHHHhhhHHHHHHhcchHhhhcccceeeeeccccchhhHHHHHHH-HHH
Confidence 999999999999999998752 3 467788888888888888 766555443210 01 12222223333444 233
Q ss_pred HHHHHHHHHHHhcCCcee
Q 022504 261 FELACAHGACRELDLFMY 278 (296)
Q Consensus 261 ~~ay~l~~~~l~~~g~~~ 278 (296)
..-....++.++|.+|..
T Consensus 246 f~~Nls~f~~ig~tSalT 263 (316)
T KOG1441|consen 246 FLLNLSAFLVIGRTSALT 263 (316)
T ss_pred HHHHHHHHHHHcccCchh
Confidence 444456677888888754
No 34
>KOG2766 consensus Predicted membrane protein [Function unknown]
Probab=98.67 E-value=8.6e-09 Score=88.97 Aligned_cols=232 Identities=18% Similarity=0.158 Sum_probs=153.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 022504 17 MVIVLLAQVSNMEVIKAAMSKGI-NKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFGCSSQIFSFV 95 (296)
Q Consensus 17 l~~~~~~wg~~~i~~K~~~~~~~-~p~~~~~~R~~~A~l~l~~~~~~~~r~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~ 95 (296)
-+++.++=+.++.-+.++ +.++ .|..-.+.-+.+=+++..++..+++ +.-+..| ...+++++...=.+.+...
T Consensus 24 QiLSL~~t~~a~tss~la-~k~iN~Pt~QtFl~Y~LLalVY~~~~~fR~--~~~~~~~---~hYilla~~DVEaNy~vV~ 97 (336)
T KOG2766|consen 24 QILSLLITSTAFTSSELA-RKGINAPTSQTFLNYVLLALVYGPIMLFRR--KYIKAKW---RHYILLAFVDVEANYFVVK 97 (336)
T ss_pred HHHHHHHHcchhhhHHHH-hccCCCccHHHHHHHHHHHHHHhhHHHhhh--HHHHHHH---HHhhheeEEeecccEEEee
Confidence 344444445555555544 3344 4777777888777777777765532 2112223 3467777777555666778
Q ss_pred HhhccCchhhhhhcchhhHHHHHHHHHHhhcccccccccccchhhhHHHhhhhhhhhhhccCCCCcCCCCCCCCCCcccC
Q 022504 96 GIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLL 175 (296)
Q Consensus 96 gl~~tsa~~asil~~~~Pv~~~ils~~~~~E~~~~~~~~~~~~~iG~~l~~~G~~ll~~~~g~~~~~~~~~~~~~~~~~~ 175 (296)
+.|||+-+.+..+-+-.-..+.+++++++|.|-++. |+.|+++|+.|++.+++.+- ..+ ..
T Consensus 98 AyQyTsmtSi~lLDcwaip~v~~lsw~fLktrYrlm------ki~gV~iCi~GvvmvV~sDV--~ag-----------d~ 158 (336)
T KOG2766|consen 98 AYQYTSMTSIMLLDCWAIPCVLVLSWFFLKTRYRLM------KISGVVICIVGVVMVVFSDV--HAG-----------DR 158 (336)
T ss_pred ehhhcchHHHHHHHHhhhHHHHHHHHHHHHHHHhhh------eeeeEEeEecceEEEEEeee--ccc-----------cc
Confidence 999999999988866555566778999999987665 69999999999999885421 111 13
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHhcCCCcceeccchhHHHHHHH
Q 022504 176 SPQLSWILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVAVLYS 255 (296)
Q Consensus 176 ~~~~~~~~G~ll~l~aa~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~lly~ 255 (296)
.++++..+||++++++|.+||..++..+...|+.| ...+....-++|++...+= ++++... .-+..|+. --..|+
T Consensus 159 aggsnp~~GD~lvi~GATlYaVSNv~EEflvkn~d-~~elm~~lgLfGaIIsaIQ-~i~~~~~-~~tl~w~~--~i~~yl 233 (336)
T KOG2766|consen 159 AGGSNPVKGDFLVIAGATLYAVSNVSEEFLVKNAD-RVELMGFLGLFGAIISAIQ-FIFERHH-VSTLHWDS--AIFLYL 233 (336)
T ss_pred cCCCCCccCcEEEEecceeeeeccccHHHHHhcCc-HHHHHHHHHHHHHHHHHHH-Hhhhccc-eeeEeehH--HHHHHH
Confidence 44567789999999999999999999999999985 5667777778888887765 4444431 11233332 223344
Q ss_pred HH-hhhHHHHHHHHHHHhcCCcee
Q 022504 256 LL-ALGFELACAHGACRELDLFMY 278 (296)
Q Consensus 256 gv-~~t~~ay~l~~~~l~~~g~~~ 278 (296)
+. ++...=|.+--..+|..|++.
T Consensus 234 ~f~L~MFllYsl~pil~k~~~aT~ 257 (336)
T KOG2766|consen 234 RFALTMFLLYSLAPILIKTNSATM 257 (336)
T ss_pred HHHHHHHHHHHhhHHheecCCceE
Confidence 43 233444556666777777665
No 35
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=98.59 E-value=7.7e-05 Score=67.87 Aligned_cols=203 Identities=11% Similarity=0.127 Sum_probs=144.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhCC---CChHHHHHHHHHHHHHHHHHHHHHhhcC---CC-CC------CCHHHHHH
Q 022504 12 LPSVGMVIVLLAQVSNMEVIKAAMSKG---INKYVIIVYSDALSSLFFLFCSFLFHRS---ER-PQ------LTFSILCS 78 (296)
Q Consensus 12 ~~~l~l~~~~~~wg~~~i~~K~~~~~~---~~p~~~~~~R~~~A~l~l~~~~~~~~r~---~~-~~------~~~~~~~~ 78 (296)
.-++.++...+.+++..+..|+.-..+ +.|...++.-.++-.++...+.+...|+ +. .. .+++|...
T Consensus 15 ~k~~~l~~~t~~~~~l~l~l~ys~~~~~~~f~~tt~v~~~Ei~Kl~~c~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~lk 94 (345)
T KOG2234|consen 15 MKYLSLIVLTAQNTALTLLLRYSRTREKPMFLPTTAVFLTEVIKLVFCLFLLLFEERKYAKKSLKSLSKEILAAPRETLK 94 (345)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhcCHHHHhChHHHHH
Confidence 445667777899999999999976545 6788889888888888877766654322 11 11 13345455
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCchhhhhhcchhhHHHHHHHHHHhhcccccccccccchhhhHHHhhhhhhhhhhccCC
Q 022504 79 FFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGP 158 (296)
Q Consensus 79 ~~~~g~~g~~~~~~~~~gl~~tsa~~asil~~~~Pv~~~ils~~~~~E~~~~~~~~~~~~~iG~~l~~~G~~ll~~~~g~ 158 (296)
+.+=+++....+-+++.++.+.+|++..+..++--+-|.+++.+++++|++++ ||.++++..+|+.++-....+
T Consensus 95 ~~vPa~iYalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~------Qw~Al~lL~~Gv~~vQ~~~~~ 168 (345)
T KOG2234|consen 95 VSVPALIYALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRL------QWMALVLLFAGVALVQLPSLS 168 (345)
T ss_pred HHHHHHHHHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHH------HHHHHHHHHHHHHHHhccCCC
Confidence 55555556666679999999999999999999999999999999999998877 489999999999887522211
Q ss_pred CCcCCCCCCCCCCcccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcchh-HHHHHHHHHHHHHHHHHH
Q 022504 159 PLIGELSHSGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFAAV-LIIMFYLFFFNTILSTAF 230 (296)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~G~ll~l~aa~~~a~~~v~~k~~~~~~~~~-~~~~~~~~~~g~i~~~~~ 230 (296)
. .++.+ .....+...|....+.++++-++..+..+|..|+-..+ ...+.--..+|.+..+..
T Consensus 169 ~---------~~a~~-~~~~~n~~~G~~avl~~c~~SgfAgvYfEkiLK~s~~s~wi~NiqL~~~g~~f~~l~ 231 (345)
T KOG2234|consen 169 P---------TGAKS-ESSAQNPFLGLVAVLVACFLSGFAGVYFEKILKGSNVSLWIRNIQLYFFGILFNLLT 231 (345)
T ss_pred C---------CCccC-CCcccchhhhHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHH
Confidence 1 01100 12223567899999999999999999999999875433 233333334555544443
No 36
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=98.55 E-value=2.4e-06 Score=79.42 Aligned_cols=137 Identities=16% Similarity=0.089 Sum_probs=101.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhC------CCChHHHHHHHHHHHHHHHHHHHHHhhcCCC-----------CCCC
Q 022504 10 AALPSVGMVIVLLAQVSNMEVIKAAMSK------GINKYVIIVYSDALSSLFFLFCSFLFHRSER-----------PQLT 72 (296)
Q Consensus 10 ~~~~~l~l~~~~~~wg~~~i~~K~~~~~------~~~p~~~~~~R~~~A~l~l~~~~~~~~r~~~-----------~~~~ 72 (296)
+..+.+..+++++.|+...+.+|..+++ +.++.....+-..+++++++|+....+.... ....
T Consensus 192 ~~~G~~~~l~s~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~e~~~~~~~~~~~~~~~~~~~ 271 (350)
T PTZ00343 192 TWLAFWCAMLSNLGSSLRSIFAKKTMKNKSEIGENLTASNIYMLLTLIASLISLPLVLFFEGKKWVPVWTNYTANMTNYT 271 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhcccccc
Confidence 4568999999999999999999998763 2567777777788899888888664321100 0011
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHhhccCchhhhhhcchhhHHHHHHHHHHhhcccccccccccchhhhHHHhhhhhhh
Q 022504 73 FSILCSFFLLSVFG-CSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFV 151 (296)
Q Consensus 73 ~~~~~~~~~~g~~g-~~~~~~~~~gl~~tsa~~asil~~~~Pv~~~ils~~~~~E~~~~~~~~~~~~~iG~~l~~~G~~l 151 (296)
.......+..+.+. .+++...|++++++++.++++..++.|+++.++++++++|+++.. +++|..+.+.|+++
T Consensus 272 ~~~~l~~i~~s~l~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~------~~iG~~lii~Gv~l 345 (350)
T PTZ00343 272 KGIIIFKIFFSGVWYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLL------GYLGMAVAILGALL 345 (350)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchH------hHHHHHHHHHHHHH
Confidence 11112222222222 455555667999999999999999999999999999999999877 59999999999976
Q ss_pred h
Q 022504 152 V 152 (296)
Q Consensus 152 l 152 (296)
-
T Consensus 346 Y 346 (350)
T PTZ00343 346 Y 346 (350)
T ss_pred H
Confidence 4
No 37
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=98.46 E-value=2.7e-06 Score=77.09 Aligned_cols=134 Identities=14% Similarity=0.089 Sum_probs=99.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHH---HHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHH
Q 022504 10 AALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDA---LSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFG 86 (296)
Q Consensus 10 ~~~~~l~l~~~~~~wg~~~i~~K~~~~~~~~p~~~~~~R~~---~A~l~l~~~~~~~~r~~~~~~~~~~~~~~~~~g~~g 86 (296)
..|+....+++.+.++...+..|.. +.||.+..+.... +++.++.+.. ++.+|. +.+.....++.|++.
T Consensus 150 ~~~Gi~~~l~sg~~y~~~~~~~~~~---~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~~~-~~~~~~~~~~~Gi~~ 221 (290)
T TIGR00776 150 FKKGILLLLMSTIGYLVYVVVAKAF---GVDGLSVLLPQAIGMVIGGIIFNLGH----ILAKPL-KKYAILLNILPGLMW 221 (290)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHc---CCCcceehhHHHHHHHHHHHHHHHHH----hcccch-HHHHHHHHHHHHHHH
Confidence 3689999999999999999999974 3899988555544 4444433321 111222 233344455577776
Q ss_pred HHHHHHHHHHhh-ccCchhhhhhcchhhHHHHHHHHHHhhcccccccccccchhhhHHHhhhhhhhhh
Q 022504 87 CSSQIFSFVGIQ-YSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVT 153 (296)
Q Consensus 87 ~~~~~~~~~gl~-~tsa~~asil~~~~Pv~~~ils~~~~~E~~~~~~~~~~~~~iG~~l~~~G~~ll~ 153 (296)
...+.+|+.+.+ +.+++.++++.+..|+...+.+.+++||+.++|++ +.-.+|.++.+.|+.++.
T Consensus 222 ~ia~~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~~~--~~~~iG~~lIi~~~~l~~ 287 (290)
T TIGR00776 222 GIGNFFYLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKREM--IAISVGIILIIIAANILG 287 (290)
T ss_pred HHHHHHHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCccee--ehhHHHHHHHHHHHHHHh
Confidence 777888999999 99999999999999999999999999999877741 112289999999987764
No 38
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.39 E-value=0.00017 Score=64.83 Aligned_cols=252 Identities=15% Similarity=0.108 Sum_probs=166.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhC-CCChHH-HHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHH
Q 022504 12 LPSVGMVIVLLAQVSNMEVIKAAMSK-GINKYV-IIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFGCSS 89 (296)
Q Consensus 12 ~~~l~l~~~~~~wg~~~i~~K~~~~~-~~~p~~-~~~~R~~~A~l~l~~~~~~~~r~~~~~~~~~~~~~~~~~g~~g~~~ 89 (296)
++....+.=.+.=-.+-++-|.++.. ++|... +..++.+...+.+...-.. +--+.+++++++.+..+...++-.++
T Consensus 12 ~~l~sa~~Y~~sS~lm~vvNK~vls~y~f~~~l~l~~~Q~l~s~~~v~~lk~~-~lv~~~~l~~~~~kk~~P~~~lf~~~ 90 (314)
T KOG1444|consen 12 SPLLSALFYCLSSILMTVVNKIVLSSYNFPMGLLLMLLQSLASVLVVLVLKRL-GLVNFRPLDLRTAKKWFPVSLLFVGM 90 (314)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHh-ceeecCCcChHHHHHHccHHHHHHHH
Confidence 33443333333333455667888764 344332 2337777766665543211 11122567888899999999988888
Q ss_pred HHHHHHHhhccCchhhhhhcchhhHHHHHHHHHHhhcccccccccccchhhhHHHhhhhhhhhhhccCCCCcCCCCCCCC
Q 022504 90 QIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGS 169 (296)
Q Consensus 90 ~~~~~~gl~~tsa~~asil~~~~Pv~~~ils~~~~~E~~~~~~~~~~~~~iG~~l~~~G~~ll~~~~g~~~~~~~~~~~~ 169 (296)
...-..+++|.+...-+++=+..|+++.+.-..+++.|.+ +.-+..+....+|.......+
T Consensus 91 i~t~~~slk~lnVpm~tv~kn~tii~~ai~E~lf~~~~~~------~~v~~Sv~~m~~~s~~~~~~d------------- 151 (314)
T KOG1444|consen 91 LFTGSKSLKYLNVPMFTVFKNLTIILTAIGEVLFFGKRPS------NKVWASVFAMIIGSVAAAFTD------------- 151 (314)
T ss_pred HHHccccccccCchHHHHHhhchHHHHHHhHHhhcCcCch------hhHHHHHHHHHHHHHhhcccc-------------
Confidence 8888999999999999999999999999998888886654 445778888888876544210
Q ss_pred CCcccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcc-hhHHHHHHHHHHHHHHHHHHHHHHhcCC------Ccce
Q 022504 170 PRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFA-AVLIIMFYLFFFNTILSTAFALIVVSEP------SDWK 242 (296)
Q Consensus 170 ~~~~~~~~~~~~~~G~ll~l~aa~~~a~~~v~~k~~~~~~~-~~~~~~~~~~~~g~i~~~~~~~~~~~~~------~~~~ 242 (296)
..-...|-.+.+.+.++-+.+.+..||..+... ..+.+..+..+....+......++++-. +.|.
T Consensus 152 --------~sf~~~gY~w~~~n~~~~a~~~v~~kk~vd~~~l~~~~lv~yNnl~~L~~l~~~~~~~ge~~~l~~~~~~~~ 223 (314)
T KOG1444|consen 152 --------LSFNLRGYSWALANCLTTAAFVVYVKKSVDSANLNKFGLVFYNNLLSLPPLLILSFITGELDALSLNFDNWS 223 (314)
T ss_pred --------ceecchhHHHHHHHHHHHHHHHHHHHHhhccccccceeEEeehhHHHHHHHHHHHHHhcchHHHHhhccccc
Confidence 011234899999999999999999988766532 2355778888888777777776665421 1121
Q ss_pred eccchhHHHHHHHHHhhhHHHHHHHHHHHhcCCceee--ecccccHHHHHHhhh
Q 022504 243 LGLDIGLVAVLYSLLALGFELACAHGACRELDLFMYQ--CSSPWPLSSLLSWMS 294 (296)
Q Consensus 243 ~~~~~~~~~lly~gv~~t~~ay~l~~~~l~~~g~~~~--~s~~~p~~~l~~~~~ 294 (296)
. ...+..+...++++-++.|..+ ++.+..+++.. +...+=+.+-++|+.
T Consensus 224 ~--~~~~~~~~lScv~gf~isy~s~-~ct~~~SAtT~tivG~~n~l~t~l~~ll 274 (314)
T KOG1444|consen 224 D--SSVLVVMLLSCVMGFGISYTSF-LCTRVNSATTTTIVGAKNKLLTYLGGLL 274 (314)
T ss_pred c--hhHHHHHHHHHHHHHHHHHHHH-HHHhhccccceeehhhhhhHHHHHHHHh
Confidence 1 1236678888888877877764 56666677552 444444455555553
No 39
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=98.38 E-value=1.3e-05 Score=71.38 Aligned_cols=132 Identities=15% Similarity=0.170 Sum_probs=102.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHH-HHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHH-HH
Q 022504 11 ALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIV-YSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFG-CS 88 (296)
Q Consensus 11 ~~~~l~l~~~~~~wg~~~i~~K~~~~~~~~p~~~~~-~R~~~A~l~l~~~~~~~~r~~~~~~~~~~~~~~~~~g~~g-~~ 88 (296)
..+.+..+.+.+.|+...+..|... ..++..... +.+..+.....+.. ...+. .+.+.+++......|+++ ..
T Consensus 153 ~~g~~~~l~a~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~g~~~~~i 227 (292)
T COG0697 153 LLGLLLALAAALLWALYTALVKRLS--RLGPVTLALLLQLLLALLLLLLFF-LSGFG--APILSRAWLLLLYLGVFSTGL 227 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc--CCChHHHHHHHHHHHHHHHHHHHH-hcccc--ccCCHHHHHHHHHHHHHHHHH
Confidence 5789999999999999999999765 477777777 44432222222221 11111 234567788888999999 67
Q ss_pred HHHHHHHHhhccCchhhhhhcchhhHHHHHHHHHHhhcccccccccccchhhhHHHhhhhhhhhh
Q 022504 89 SQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVT 153 (296)
Q Consensus 89 ~~~~~~~gl~~tsa~~asil~~~~Pv~~~ils~~~~~E~~~~~~~~~~~~~iG~~l~~~G~~ll~ 153 (296)
.+.+++.+++..+++.++.+.++.|++..++++++++|+++.+ +++|..+.+.|+.+..
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~------~~~G~~li~~g~~l~~ 286 (292)
T COG0697 228 AYLLWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPA------QLLGAALVVLGVLLAS 286 (292)
T ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHH------HHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999998766 5899999999987764
No 40
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=98.31 E-value=3.3e-06 Score=65.36 Aligned_cols=67 Identities=16% Similarity=0.138 Sum_probs=59.9
Q ss_pred HHHHHH-HHHHHHHHHHhhccCchhhhhhcchhhHHHHHHHHHHhhcccccccccccchhhhHHHhhhhhhhhh
Q 022504 81 LLSVFG-CSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVT 153 (296)
Q Consensus 81 ~~g~~g-~~~~~~~~~gl~~tsa~~asil~~~~Pv~~~ils~~~~~E~~~~~~~~~~~~~iG~~l~~~G~~ll~ 153 (296)
..++.+ ...+.++..++++.+.+.|-.+.++.|+++.++++++++||++++ |++|+.+.++|++++.
T Consensus 41 ~~~~~~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~------~~~Gi~lii~Gv~~i~ 108 (111)
T PRK15051 41 GLALACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPR------HWCGVAFIIGGIVILG 108 (111)
T ss_pred HHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHHh
Confidence 344466 778899999999999999999999999999999999999999877 5999999999998764
No 41
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=98.31 E-value=1.4e-05 Score=72.45 Aligned_cols=132 Identities=10% Similarity=-0.007 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 022504 15 VGMVIVLLAQVSNMEVIKAAMSKG-INKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFGCSSQIFS 93 (296)
Q Consensus 15 l~l~~~~~~wg~~~i~~K~~~~~~-~~p~~~~~~R~~~A~l~l~~~~~~~~r~~~~~~~~~~~~~~~~~g~~g~~~~~~~ 93 (296)
...+.++++|+.+.+..|...+++ .++.....+-..++.+.+.++... ........+...+......|+.+...+.++
T Consensus 152 ~~~l~aa~~~a~~~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~t~i~~~~~ 230 (296)
T PRK15430 152 IIALGLAFSFAFYGLVRKKIAVEAQTGMLIETMWLLPVAAIYLFAIADS-STSHMGQNPMSLNLLLIAAGIVTTVPLLCF 230 (296)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHccC-CcccccCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 346678899999999999863221 222333333333333332221100 000011112233334444555447889999
Q ss_pred HHHhhccCchhhhhhcchhhHHHHHHHHHHhhcccccccccccchhhhHHHhhhhhhhhh
Q 022504 94 FVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVT 153 (296)
Q Consensus 94 ~~gl~~tsa~~asil~~~~Pv~~~ils~~~~~E~~~~~~~~~~~~~iG~~l~~~G~~ll~ 153 (296)
+.++++.+++.++.+.++.|++..++++++++|+++.+ +++|..+.+.|+.++.
T Consensus 231 ~~a~~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~~~~~------~~~G~~lI~~~~~v~~ 284 (296)
T PRK15430 231 TAAATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGAD------KMVTFAFIWVALAIFV 284 (296)
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCHH------HHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998776 5899999988887765
No 42
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=98.19 E-value=0.0002 Score=63.84 Aligned_cols=201 Identities=18% Similarity=0.209 Sum_probs=124.3
Q ss_pred hhhhHHHHHHHH--HHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcC-C--CCCCCHHHH-HHHHHH
Q 022504 9 RAALPSVGMVIV--LLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRS-E--RPQLTFSIL-CSFFLL 82 (296)
Q Consensus 9 ~~~~~~l~l~~~--~~~wg~~~i~~K~~~~~~~~p~~~~~~R~~~A~l~l~~~~~~~~r~-~--~~~~~~~~~-~~~~~~ 82 (296)
.+....+++++. .+.-|..|...+.-.+. --|..++.+....=..+-.......+++ . +...+|++. +++...
T Consensus 12 ~~rV~~L~lVl~yY~~Si~Ltf~~~~~~~~f-~fPLf~ts~h~~v~flfa~~~~~l~~~~~~r~r~~~sw~~~Lr~~aPt 90 (349)
T KOG1443|consen 12 MNRVLTLALVLLYYFLSIGLTFYFKWLTKNF-HFPLFVTSLHLAVKFLFAALSRRLYQCSVPRARVVLSWRDYLRRLAPT 90 (349)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhcCc-CCchHHHHHHHHHHHHHHHHHHHHHhccCCccccCCcHHHHHHHhhhh
Confidence 333444444433 23335567777665443 2366666666544333332222222211 1 224567764 457788
Q ss_pred HHHHHHHHHHHHHHhhccCchhhhhhcchhhHHHHHHHHHHhhcccccccccccchhhhHHHhhhhhhhhhhccCCCCcC
Q 022504 83 SVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIG 162 (296)
Q Consensus 83 g~~g~~~~~~~~~gl~~tsa~~asil~~~~Pv~~~ils~~~~~E~~~~~~~~~~~~~iG~~l~~~G~~ll~~~~g~~~~~ 162 (296)
|+.+..-..+..++++|.+.+.-+..=+..++|+.+++.+++-||.++. -..-+.+..+|+++++. +..
T Consensus 91 alata~DIGLSN~sl~yVtlSlYTM~KSSsi~FIllFs~if~lEk~~w~------L~l~v~lI~~Glflft~-KsT---- 159 (349)
T KOG1443|consen 91 ALATALDIGLSNWSLEYVTLSLYTMTKSSSILFILLFSLIFKLEKFRWA------LVLIVLLIAVGLFLFTY-KST---- 159 (349)
T ss_pred hhhhhcccccccceeeeeeeeeeeeccccHHHHHHHHHHHHHhHHHHHH------HHHHHHHHhhheeEEEe-ccc----
Confidence 8888888899999999999999999999999999999999999998764 12333444455555542 211
Q ss_pred CCCCCCCCCcccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcc----hhHHHHHHHHHHHHHHHHHHHHHHhcC
Q 022504 163 ELSHSGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFA----AVLIIMFYLFFFNTILSTAFALIVVSE 237 (296)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~G~ll~l~aa~~~a~~~v~~k~~~~~~~----~~~~~~~~~~~~g~i~~~~~~~~~~~~ 237 (296)
+. ...|-++++.+.++-++-=.+.+++.++.| .|+.......-.-.+.++|..+.+|+.
T Consensus 160 ---------------qf-~i~Gf~lv~~aS~~sGlRW~~tQ~ll~~~~~~~~~P~~ti~~l~p~M~~~Ll~~~l~fEG~ 222 (349)
T KOG1443|consen 160 ---------------QF-NIEGFFLVLAASLLSGLRWAFTQMLLRNQPSAKRNPIDTIFHLQPWMSIGLLPLSLLFEGL 222 (349)
T ss_pred ---------------ce-eehhHHHHHHHHHhhhhhHHHHHHHHhcCccccCCCeeeHHHhhhHHHHHHHHHHHHHccc
Confidence 11 356999999998888887777777777654 344443333334445566666667764
No 43
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=98.15 E-value=3.7e-06 Score=65.29 Aligned_cols=96 Identities=19% Similarity=0.152 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHhcCCCcceeccchhHHHHHHHHHhhhHHHHHHHHHHHh
Q 022504 193 FMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVAVLYSLLALGFELACAHGACRE 272 (296)
Q Consensus 193 ~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~lly~gv~~t~~ay~l~~~~l~ 272 (296)
++||.+.+..|+..++.| +...+++.+..+.+ +.+...+.+..+ .... ....+...++.+++++.+++.++++++|
T Consensus 1 ~~~a~~~~~~k~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 76 (126)
T PF00892_consen 1 FSWAIYSVFSKKLLKKIS-PLSITFWRFLIAGI-LLILLLILGRKP-FKNL-SPRQWLWLLFLGLLGTALAYLLYFYALK 76 (126)
T ss_pred ceeeeHHHHHHHHhccCC-HHHHHHHHHHHHHH-HHHHHHhhcccc-ccCC-ChhhhhhhhHhhccceehHHHHHHHHHH
Confidence 478999999999999984 78999999999988 666665554432 1111 2234677888999889999999999999
Q ss_pred cCCceeeeccc---ccHH-HHHHhh
Q 022504 273 LDLFMYQCSSP---WPLS-SLLSWM 293 (296)
Q Consensus 273 ~~g~~~~~s~~---~p~~-~l~~~~ 293 (296)
+.++.. ++.+ +|+. .+++|.
T Consensus 77 ~~~~~~-~~~~~~~~pv~~~i~~~~ 100 (126)
T PF00892_consen 77 YISASI-VSILQYLSPVFAAILGWL 100 (126)
T ss_pred hcchhH-HHHHHHHHHHHHHHHHHH
Confidence 999988 6554 4544 355554
No 44
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=97.92 E-value=0.00066 Score=59.99 Aligned_cols=188 Identities=15% Similarity=0.134 Sum_probs=125.2
Q ss_pred HHHHHHHHHHHh---CCCC----hHHHHHHHHHHHHHHHHHHHHHhhcCCC---------------CCCCHHHHHHHHHH
Q 022504 25 VSNMEVIKAAMS---KGIN----KYVIIVYSDALSSLFFLFCSFLFHRSER---------------PQLTFSILCSFFLL 82 (296)
Q Consensus 25 g~~~i~~K~~~~---~~~~----p~~~~~~R~~~A~l~l~~~~~~~~r~~~---------------~~~~~~~~~~~~~~ 82 (296)
+.|-+.+|.+-+ .+-| |+..+..-|+-=..++..+..++.|... ++.+.. ..+.=
T Consensus 16 s~Ntl~aKwadsi~~eg~pgfqhpvlqal~mFlGEflCl~vf~lir~~sn~~g~~s~~~~ilsq~~~pf~p~---lfl~P 92 (372)
T KOG3912|consen 16 SFNTLVAKWADSIQAEGSPGFQHPVLQALLMFLGEFLCLAVFKLIRLRSNGQGVSSDLDSILSQDSSPFNPV---LFLPP 92 (372)
T ss_pred cHHHHHHHHHHhhhhhCCCccccHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccccccccCCCCcc---eecCh
Confidence 456777888632 1222 5555555555544555555444433221 112221 22223
Q ss_pred HHHHHHHHHHHHHHhhccCchhhhhhcchhhHHHHHHHHHHhhcccccccccccchhhhHHHhhhhhhhhhhccCCCCcC
Q 022504 83 SVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIG 162 (296)
Q Consensus 83 g~~g~~~~~~~~~gl~~tsa~~asil~~~~Pv~~~ils~~~~~E~~~~~~~~~~~~~iG~~l~~~G~~ll~~~~g~~~~~ 162 (296)
+++........+.|+.+|+++.--.+-...-+|+-+++..+++.++..+ ||+|+.....|++.+...+ ...
T Consensus 93 al~Di~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~------qWl~i~fv~lGlviVg~~d---~~~ 163 (372)
T KOG3912|consen 93 ALCDIAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGR------QWLGILFVSLGLVIVGSLD---VHL 163 (372)
T ss_pred HHHHHhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchh------hHHHHHHHHhhhheeeeee---ccc
Confidence 4444455667889999999988888878888999999999999988666 5899999999998875321 000
Q ss_pred CCCCCCCCCcccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcc-hhHHHHHHHHHHHHHHHHHHHH
Q 022504 163 ELSHSGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFA-AVLIIMFYLFFFNTILSTAFAL 232 (296)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~G~ll~l~aa~~~a~~~v~~k~~~~~~~-~~~~~~~~~~~~g~i~~~~~~~ 232 (296)
+++ | .+..++...||++.+++-+.-|+..+.-+|..++++ +|.....|+-++|.+.+...+.
T Consensus 164 --~~~--p----~~d~s~iitGdllIiiaqiivaiQ~v~Eek~l~~~nV~pl~avg~eGlfG~v~~slL~i 226 (372)
T KOG3912|consen 164 --VTD--P----YTDYSSIITGDLLIIIAQIIVAIQMVCEEKQLKKSNVAPLQAVGWEGLFGLVILSLLAI 226 (372)
T ss_pred --ccC--C----ccccccchhhhHHHHHHHHHHHHHHHHHHhhhhhccCCHHHHhhhhhhHHHHHHHHHHH
Confidence 000 0 122345678999999999999999999999888864 5788899999998655544433
No 45
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=97.86 E-value=0.00035 Score=55.52 Aligned_cols=117 Identities=16% Similarity=0.178 Sum_probs=86.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHH-HHHH
Q 022504 12 LPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFG-CSSQ 90 (296)
Q Consensus 12 ~~~l~l~~~~~~wg~~~i~~K~~~~~~~~p~~~~~~R~~~A~l~l~~~~~~~~r~~~~~~~~~~~~~~~~~g~~g-~~~~ 90 (296)
++++.++.+.++=+...+.-|..+++ .+....... . ...+. . . .+. ...+..|+.. .+.+
T Consensus 2 ~~~~~i~~sv~l~~~gQl~~K~g~~~-~g~~~~~~~-~-~~~~~------~-~------~~p---~~~i~lgl~~~~la~ 62 (129)
T PRK02971 2 MGYLWGLASVLLASVAQLSLKWGMSR-LPLLSHAWD-F-IAALL------A-F------GLA---LRAVLLGLAGYALSM 62 (129)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhh-CCCccchhH-H-HHHHH------H-H------hcc---HHHHHHHHHHHHHHH
Confidence 36777888888888999999999864 443332221 1 10000 0 0 010 1256778888 8899
Q ss_pred HHHHHHhhccCchhhhhhcchhhHHHHHHHHH--HhhcccccccccccchhhhHHHhhhhhhhhh
Q 022504 91 IFSFVGIQYSSPTLSTAMLNLIPAFTFVLAII--FRLEKLNWENKSSQAKSLGTFASIGGAFVVT 153 (296)
Q Consensus 91 ~~~~~gl~~tsa~~asil~~~~Pv~~~ils~~--~~~E~~~~~~~~~~~~~iG~~l~~~G~~ll~ 153 (296)
.++..++++.+.+.|.-+.+..|.++.+.++. +++|+++++ |++|+.+.++|++++.
T Consensus 63 ~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~------~~iGi~lIi~GV~lv~ 121 (129)
T PRK02971 63 LCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLK------KTLGVACIMLGVWLIN 121 (129)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHH------HHHHHHHHHHHHHHhc
Confidence 99999999999999999999999888888874 799999877 5999999999998875
No 46
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=97.82 E-value=0.00041 Score=59.77 Aligned_cols=184 Identities=13% Similarity=0.035 Sum_probs=129.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCchhhhhhcchhhHHHHHHHHHHhhcccccccccccchhhhHHHhhhhhhhhhhccC
Q 022504 78 SFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKG 157 (296)
Q Consensus 78 ~~~~~g~~g~~~~~~~~~gl~~tsa~~asil~~~~Pv~~~ils~~~~~E~~~~~~~~~~~~~iG~~l~~~G~~ll~~~~g 157 (296)
.....+.-..+.+.....++||.+=-+..+=-+.-|+-+++++.++.+++-+|+ |..+++..+.|+.+.....+
T Consensus 87 ~YaAcs~sYLlAMVssN~Alq~vpYPTqVlgKScKPIPVMilGVl~~~KsY~w~------kY~cVL~IV~GValFmYK~~ 160 (337)
T KOG1580|consen 87 MYAACSASYLLAMVSSNQALQYVPYPTQVLGKSCKPIPVMILGVLFAHKSYHWR------KYCCVLMIVVGVALFMYKEN 160 (337)
T ss_pred HHHHHHHHHHHHHHhccchhcccCCcHHHhcccCCCcceeeeehhhhcccccHH------HHHHHHHHHHHHHHhhcccc
Confidence 344444433678888899999998666666667889999999999988887666 58899999999988753212
Q ss_pred CCCcCCCCCCCCCCcccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcc-hhHHHHHHHHHHHHHHHHHHHHHHhc
Q 022504 158 PPLIGELSHSGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFA-AVLIIMFYLFFFNTILSTAFALIVVS 236 (296)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~G~ll~l~aa~~~a~~~v~~k~~~~~~~-~~~~~~~~~~~~g~i~~~~~~~~~~~ 236 (296)
.- + .........|+++.+++-..=++....|+++.+++. +...++.+..+.+.+.+..-.++.++
T Consensus 161 Kv-------~-------g~e~~t~g~GElLL~lSL~mDGlTg~~Qdrira~yq~~g~~MM~~~NlwStL~Lg~g~lfTGE 226 (337)
T KOG1580|consen 161 KV-------G-------GAEDKTFGFGELLLILSLAMDGLTGSIQDRIRASYQRTGTSMMFYTNLWSTLYLGAGLLFTGE 226 (337)
T ss_pred cc-------C-------CCcccccchHHHHHHHHHHhcccchhHHHHHHHhhccCchhhHHHHHHHHHHHhhhhheehhh
Confidence 21 1 111234568999999999888999999999877763 33567777777777776655444433
Q ss_pred C--CCcceeccchhHHHHHHHHHhhhHHHHHHHHHHHhcCCceeeeccc
Q 022504 237 E--PSDWKLGLDIGLVAVLYSLLALGFELACAHGACRELDLFMYQCSSP 283 (296)
Q Consensus 237 ~--~~~~~~~~~~~~~~lly~gv~~t~~ay~l~~~~l~~~g~~~~~s~~ 283 (296)
. ...+..-.+..|+-+...++ ++.++.+..+..+++.||.. .|++
T Consensus 227 lweF~yF~~RhP~~~~~l~l~ai-~s~LGQ~fIF~tv~~FgPLt-CSiv 273 (337)
T KOG1580|consen 227 LWEFFYFVQRHPYVFWDLTLLAI-ASCLGQWFIFKTVEEFGPLT-CSIV 273 (337)
T ss_pred HHHHHHHHHhccHHHHHHHHHHH-HHHhhhHHHHHHHHHhCCee-EEEE
Confidence 1 00111112234666777777 78999999999999999986 5553
No 47
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=97.81 E-value=0.0002 Score=60.11 Aligned_cols=101 Identities=22% Similarity=0.337 Sum_probs=84.4
Q ss_pred HHHHHHHHHHHHHHhhccCchhhhhhcchhhHHHHHHHHHHhhcccccccccccchhhhHHHhhhhhhhhhhccCCCCcC
Q 022504 83 SVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIG 162 (296)
Q Consensus 83 g~~g~~~~~~~~~gl~~tsa~~asil~~~~Pv~~~ils~~~~~E~~~~~~~~~~~~~iG~~l~~~G~~ll~~~~g~~~~~ 162 (296)
.++..+.++.|..+++..+++.++.+....-.|+.++++++++||+.-. |+++.++++.|++.+... ++
T Consensus 60 ~i~Wt~aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~------kIlaailAI~GiVmiay~-DN---- 128 (290)
T KOG4314|consen 60 SIFWTGANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGF------KILAAILAIGGIVMIAYA-DN---- 128 (290)
T ss_pred EEEEecCCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhh------hHHHHHHHhCcEEEEEec-cc----
Confidence 3434567889999999999999999999999999999999999998654 699999999999887632 11
Q ss_pred CCCCCCCCCcccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022504 163 ELSHSGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRK 208 (296)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~G~ll~l~aa~~~a~~~v~~k~~~~~ 208 (296)
. ..+...|..++.++|..-|+|-++-|+....
T Consensus 129 ------~--------~a~e~iGi~~AV~SA~~aAlYKV~FK~~iGn 160 (290)
T KOG4314|consen 129 ------E--------HADEIIGIACAVGSAFMAALYKVLFKMFIGN 160 (290)
T ss_pred ------h--------hhhhhhhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 1 1234789999999999999999999987665
No 48
>COG2510 Predicted membrane protein [Function unknown]
Probab=97.57 E-value=0.0015 Score=51.16 Aligned_cols=107 Identities=10% Similarity=-0.130 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHhcCCCcceeccchhHHHHHHHHHhhhHHHH
Q 022504 185 GFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVAVLYSLLALGFELA 264 (296)
Q Consensus 185 ~ll~l~aa~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~lly~gv~~t~~ay 264 (296)
.++++++|+.+++..++.|-..|+.+ |..-|+.-..+..+.+.......++....-.. ....|.-++..|+ +++.++
T Consensus 5 ~~~ALLsA~fa~L~~iF~KIGl~~vd-p~~At~IRtiVi~~~l~~v~~~~g~~~~~~~~-~~k~~lflilSGl-a~glsw 81 (140)
T COG2510 5 IIYALLSALFAGLTPIFAKIGLEGVD-PDFATTIRTIVILIFLLIVLLVTGNWQAGGEI-GPKSWLFLILSGL-AGGLSW 81 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccC-ccHHHHHHHHHHHHHHHHHHHhcCceeccccc-CcceehhhhHHHH-HHHHHH
Confidence 56889999999999999999899874 66777777777777777666555432111111 2234677788885 899999
Q ss_pred HHHHHHHhcCCceee--ecccccHH-HHHHhhh
Q 022504 265 CAHGACRELDLFMYQ--CSSPWPLS-SLLSWMS 294 (296)
Q Consensus 265 ~l~~~~l~~~g~~~~--~s~~~p~~-~l~~~~~ 294 (296)
.+|++++|+-.+++. .+-+.|+- .++||+.
T Consensus 82 l~Yf~ALk~G~as~VvPldk~svvl~~lls~lf 114 (140)
T COG2510 82 LLYFRALKKGKASRVVPLDKTSVVLAVLLSILF 114 (140)
T ss_pred HHHHHHHhcCCcceEEEcccccHHHHHHHHHHH
Confidence 999999998666552 33455554 5788763
No 49
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=97.54 E-value=0.0014 Score=60.32 Aligned_cols=140 Identities=11% Similarity=0.032 Sum_probs=104.3
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCC--CHHHHHHHHHHHHH
Q 022504 8 MRAALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQL--TFSILCSFFLLSVF 85 (296)
Q Consensus 8 ~~~~~~~l~l~~~~~~wg~~~i~~K~~~~~~~~p~~~~~~R~~~A~l~l~~~~~~~~r~~~~~~--~~~~~~~~~~~g~~ 85 (296)
.++.++-+.++.++.++|.+.+.-|..+. +.|+.++...=.+++.++..+.....+|+...+. +.+....++..++.
T Consensus 164 ~~~i~GDll~l~~a~lya~~nV~~E~~v~-~~~~~~~lg~~Glfg~ii~~iq~~ile~~~i~~~~w~~~~~~~~v~~~~~ 242 (334)
T PF06027_consen 164 SNPILGDLLALLGAILYAVSNVLEEKLVK-KAPRVEFLGMLGLFGFIISGIQLAILERSGIESIHWTSQVIGLLVGYALC 242 (334)
T ss_pred CccchhHHHHHHHHHHHHHHHHHHHHhcc-cCCHHHHHHHHHHHHHHHHHHHHHheehhhhhccCCChhhHHHHHHHHHH
Confidence 45688999999999999999999999876 5899988888888888887777666676654333 33333332222222
Q ss_pred HHHHHHHHHHHhhccCchhhhhhcchhhHHHHHHHHHHhhcccccccccccchhhhHHHhhhhhhhhhh
Q 022504 86 GCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTF 154 (296)
Q Consensus 86 g~~~~~~~~~gl~~tsa~~asil~~~~Pv~~~ils~~~~~E~~~~~~~~~~~~~iG~~l~~~G~~ll~~ 154 (296)
....+.+.-..+++++|+...+=.-+..++.++++.++++|++++. .++|.++.++|.++...
T Consensus 243 lf~~y~l~p~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~~~~l------y~~af~lIiiG~vvy~~ 305 (334)
T PF06027_consen 243 LFLFYSLVPIVLRMSSATFFNLSLLTSDFYALIIDIFFFGYKFSWL------YILAFALIIIGFVVYNL 305 (334)
T ss_pred HHHHHHHHHHHHHhCccceeehHHHHhhHHHHHHHHHhcCccccHH------HHHHHHHHHHHhheEEc
Confidence 2444445566788888876666566788999999999999998765 58999999999988653
No 50
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=97.53 E-value=0.0027 Score=57.77 Aligned_cols=135 Identities=21% Similarity=0.261 Sum_probs=107.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHHHHHHHHHHhh-cCCCC-----CCCHHHHHHHHHHHHH
Q 022504 13 PSVGMVIVLLAQVSNMEVIKAAMS-KGINKYVIIVYSDALSSLFFLFCSFLFH-RSERP-----QLTFSILCSFFLLSVF 85 (296)
Q Consensus 13 ~~l~l~~~~~~wg~~~i~~K~~~~-~~~~p~~~~~~R~~~A~l~l~~~~~~~~-r~~~~-----~~~~~~~~~~~~~g~~ 85 (296)
|+..++++.++=|...+.-|..++ ++.++.+..++-..++.++.++...... .+..+ ..++..+..++..++.
T Consensus 155 G~~ll~~sl~~~a~~~~~qe~~~~~~~~~~~~~mfy~n~~~~~~~~~~~~~l~~~~~~~~~~f~~~~p~~~~~l~~~s~~ 234 (303)
T PF08449_consen 155 GIILLLLSLLLDAFTGVYQEKLFKKYGKSPWELMFYTNLFSLPFLLILLFLLPTGEFRSAIRFISAHPSVLLYLLLFSLT 234 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhHHHHHHHHHHHHH
Confidence 889999999999999999998885 5789999999999999998887766511 11111 0122344556667777
Q ss_pred HHHHHHHHHHHhhccCchhhhhhcchhhHHHHHHHHHHhhcccccccccccchhhhHHHhhhhhhhhh
Q 022504 86 GCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVT 153 (296)
Q Consensus 86 g~~~~~~~~~gl~~tsa~~asil~~~~Pv~~~ils~~~~~E~~~~~~~~~~~~~iG~~l~~~G~~ll~ 153 (296)
+...+.+.+.-.+..++...+++..+--+++++++.++++|++++. +|+|+.+.+.|..+=.
T Consensus 235 ~~~g~~~i~~~~~~~~al~~t~v~t~Rk~~sillS~~~f~~~~~~~------~~~G~~lv~~g~~~~~ 296 (303)
T PF08449_consen 235 GALGQFFIFYLIKKFSALTTTIVTTLRKFLSILLSVIIFGHPLSPL------QWIGIVLVFAGIFLYS 296 (303)
T ss_pred HHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHhcCCcCChH------HHHHHHHhHHHHHHHH
Confidence 7666677777889999999999999999999999999999998776 5899999999997644
No 51
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=97.48 E-value=0.002 Score=56.24 Aligned_cols=132 Identities=13% Similarity=0.027 Sum_probs=106.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHH-H
Q 022504 9 RAALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFG-C 87 (296)
Q Consensus 9 ~~~~~~l~l~~~~~~wg~~~i~~K~~~~~~~~p~~~~~~R~~~A~l~l~~~~~~~~r~~~~~~~~~~~~~~~~~g~~g-~ 87 (296)
.+..+..+.+.+..+|...-+..|-+=+ ..+--.-+..-+.+|+++.+|+-....... -.+++....-+..|+++ .
T Consensus 145 lDp~Gv~~Al~AG~~Wa~YIv~G~r~g~-~~~g~~g~a~gm~vAaviv~Pig~~~ag~~--l~~p~ll~laLgvavlSSa 221 (292)
T COG5006 145 LDPVGVALALGAGACWALYIVLGQRAGR-AEHGTAGVAVGMLVAALIVLPIGAAQAGPA--LFSPSLLPLALGVAVLSSA 221 (292)
T ss_pred CCHHHHHHHHHHhHHHHHHHHHcchhcc-cCCCchHHHHHHHHHHHHHhhhhhhhcchh--hcChHHHHHHHHHHHHhcc
Confidence 4667888899999999999999988743 366677788899999999999865422111 13455556667788899 8
Q ss_pred HHHHHHHHHhhccCchhhhhhcchhhHHHHHHHHHHhhcccccccccccchhhhHHHhhhhh
Q 022504 88 SSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGA 149 (296)
Q Consensus 88 ~~~~~~~~gl~~tsa~~asil~~~~Pv~~~ils~~~~~E~~~~~~~~~~~~~iG~~l~~~G~ 149 (296)
..+.+...+++..+..+-+++.++.|.+..+.++++++|+++..| |+|+..-+.+.
T Consensus 222 lPYsLEmiAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~q------wlaI~~ViaAs 277 (292)
T COG5006 222 LPYSLEMIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLIQ------WLAIAAVIAAS 277 (292)
T ss_pred cchHHHHHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHHH------HHHHHHHHHHH
Confidence 999999999999999999999999999999999999999988774 67766655554
No 52
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=97.24 E-value=0.1 Score=46.53 Aligned_cols=181 Identities=10% Similarity=-0.027 Sum_probs=110.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccCchhhhhhc-chhhHHHHHHHHHHhhcccccccccccchhhhHHHhhhhhhh
Q 022504 73 FSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAML-NLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFV 151 (296)
Q Consensus 73 ~~~~~~~~~~g~~g~~~~~~~~~gl~~tsa~~asil~-~~~Pv~~~ils~~~~~E~~~~~~~~~~~~~iG~~l~~~G~~l 151 (296)
.+.+...++.|++-...|..++.+.++...+++-=+. ..+=+.+.+.+.++++|.-+.+++ -.-.+++++.++|+++
T Consensus 42 ~~~~~~~~lsG~~W~iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~gv~~fgEW~~~~~~--~~G~~Al~liiiGv~l 119 (269)
T PF06800_consen 42 GTSFIVAFLSGAFWAIGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIGVLFFGEWTTTTQK--IIGFLALVLIIIGVIL 119 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcceeeeccchhHHHHHHHHHHHhhcCCCCCcchH--HHHHHHHHHHHHHHHH
Confidence 3666677777777788899999999999988887775 456567888999999998765542 1234577888888876
Q ss_pred hhhccCCCCcCCCCCCCCCCcccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHH
Q 022504 152 VTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFA 231 (296)
Q Consensus 152 l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~G~ll~l~aa~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~g~i~~~~~~ 231 (296)
-...++++. ..++..+...|.+..+++.+.|-.|.++.|- .+. |+.....=| .+|.+....+.
T Consensus 120 ts~~~~~~~-------------~~~~~~~~~kgi~~Ll~stigy~~Y~~~~~~--~~~-~~~~~~lPq-aiGm~i~a~i~ 182 (269)
T PF06800_consen 120 TSYQDKKSD-------------KSSSKSNMKKGILALLISTIGYWIYSVIPKA--FHV-SGWSAFLPQ-AIGMLIGAFIF 182 (269)
T ss_pred hcccccccc-------------ccccccchhhHHHHHHHHHHHHHHHHHHHHh--cCC-ChhHhHHHH-HHHHHHHHHHH
Confidence 553221110 0112234567999999999999999998554 223 345544444 33333332221
Q ss_pred HHHhcCCCcceeccchhHHHHHHHHHhhhHHHHHHHHHHHhcCCcee
Q 022504 232 LIVVSEPSDWKLGLDIGLVAVLYSLLALGFELACAHGACRELDLFMY 278 (296)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~lly~gv~~t~~ay~l~~~~l~~~g~~~ 278 (296)
....+++. .+ ...|..+ ..|+ .=.++...|..+.++.|.+.
T Consensus 183 ~~~~~~~~-~~---k~~~~ni-l~G~-~w~ignl~~~is~~~~G~a~ 223 (269)
T PF06800_consen 183 NLFSKKPF-FE---KKSWKNI-LTGL-IWGIGNLFYLISAQKNGVAT 223 (269)
T ss_pred hhcccccc-cc---cchHHhh-HHHH-HHHHHHHHHHHhHHhccchh
Confidence 11112111 11 1112222 2333 23566677888888888665
No 53
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.24 E-value=0.0033 Score=55.46 Aligned_cols=211 Identities=16% Similarity=-0.001 Sum_probs=121.7
Q ss_pred HHHHHhC---CC-ChHHHHHHHHHHHHHHHHHHHHHhhcC----CCC--CCCHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 022504 31 IKAAMSK---GI-NKYVIIVYSDALSSLFFLFCSFLFHRS----ERP--QLTFSILCSFFLLSVFGCSSQIFSFVGIQYS 100 (296)
Q Consensus 31 ~K~~~~~---~~-~p~~~~~~R~~~A~l~l~~~~~~~~r~----~~~--~~~~~~~~~~~~~g~~g~~~~~~~~~gl~~t 100 (296)
.|+.++. .. .|..+.++.++....+...+.....|- ..| +++.+..+.+..+.+.-.....+-.+.++|.
T Consensus 47 nk~llss~~~~Ld~plf~t~~qcLvt~~~c~~ls~ls~k~~~~ftfp~~~ldl~t~r~vlplsvVfi~mI~fnnlcL~yV 126 (347)
T KOG1442|consen 47 NKHLLSSLVVILDAPLFITWYQCLVTTSICLVLSSLSVKYPGLFTFPSLQLDLATARQVLPLSVVFILMISFNNLCLKYV 126 (347)
T ss_pred HHHHhhchhhhcCcHHHHHHHHHHHHHHHHHHHHHHHhhccceeccCcccccHHHHHhhcchhheeeeehhccceehhhc
Confidence 5655542 12 477888888888776655554432221 112 2344444555555554433344555666666
Q ss_pred CchhhhhhcchhhHHHHHHHHHHhhcccccccccccchhhhHHHhhhhhhhhhhccCCCCcCCCCCCCCCCcccCCCCCc
Q 022504 101 SPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLS 180 (296)
Q Consensus 101 sa~~asil~~~~Pv~~~ils~~~~~E~~~~~~~~~~~~~iG~~l~~~G~~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 180 (296)
+.+---+==++.-+|++++++.++|+|-+.+. ..+..+.+.|- .-|.+.. ...+.-
T Consensus 127 gVaFYyvgRsLttvFtVlLtyvllkqkTs~~~------~~~C~lIi~GF-----~lGvdqE-------------~~~~~l 182 (347)
T KOG1442|consen 127 GVAFYYVGRSLTTVFTVLLTYVLLKQKTSFFA------LGCCLLIILGF-----GLGVDQE-------------GSTGTL 182 (347)
T ss_pred ceEEEEeccchhhhHHHHhHHhhccccccccc------ceeehhheehh-----eeccccc-------------cccCcc
Confidence 65433333346678999999999999865542 22332223332 1121110 112233
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhcc-hhHHHHHHHHHHHHHHHHHHHHHHhcCCCcce--eccch-hHHHHHHHH
Q 022504 181 WILGGFFLAAEAFMNSAWFILQALILRKFA-AVLIIMFYLFFFNTILSTAFALIVVSEPSDWK--LGLDI-GLVAVLYSL 256 (296)
Q Consensus 181 ~~~G~ll~l~aa~~~a~~~v~~k~~~~~~~-~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~--~~~~~-~~~~lly~g 256 (296)
...|.++.+.+.++-|+..+..||...... .-..++.+....+.++.+|...+.++-...+. ..++. .|..+...|
T Consensus 183 s~~GvifGVlaSl~vAlnaiytkk~l~~v~~~iw~lt~ynnv~a~lLflpll~lnge~~~v~~~~~l~a~~Fw~~mtLsg 262 (347)
T KOG1442|consen 183 SWIGVIFGVLASLAVALNAIYTKKVLPPVGDCIWRLTAYNNVNALLLFLPLLILNGEFQAVVGFPHLPAIKFWILMTLSG 262 (347)
T ss_pred chhhhHHHHHHHHHHHHHHHhhheecccccCeehhhHHHHHHHHHHHHHHHHHHcchHHHHcCcccchHHHHHHHHHHHH
Confidence 468999999999999999999887655543 33578888999999988887665543212222 12222 355556666
Q ss_pred HhhhHHHHH
Q 022504 257 LALGFELAC 265 (296)
Q Consensus 257 v~~t~~ay~ 265 (296)
+++-.+.|.
T Consensus 263 lfgF~mgyv 271 (347)
T KOG1442|consen 263 LFGFAMGYV 271 (347)
T ss_pred HHHHHhhhe
Confidence 665555553
No 54
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=97.20 E-value=0.0056 Score=54.49 Aligned_cols=133 Identities=10% Similarity=0.021 Sum_probs=89.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHH
Q 022504 9 RAALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFGCS 88 (296)
Q Consensus 9 ~~~~~~l~l~~~~~~wg~~~i~~K~~~~~~~~p~~~~~~R~~~A~l~l~~~~~~~~r~~~~~~~~~~~~~~~~~g~~g~~ 88 (296)
++.|+++.++++.+.+.....+.|.. ++||++...-..+--.+--..+.... ++. ..+++. .+-++-|++-..
T Consensus 135 ~~~kgi~~Ll~stigy~~Y~~~~~~~---~~~~~~~~lPqaiGm~i~a~i~~~~~-~~~--~~~k~~-~~nil~G~~w~i 207 (269)
T PF06800_consen 135 NMKKGILALLISTIGYWIYSVIPKAF---HVSGWSAFLPQAIGMLIGAFIFNLFS-KKP--FFEKKS-WKNILTGLIWGI 207 (269)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHhc---CCChhHhHHHHHHHHHHHHHHHhhcc-ccc--ccccch-HHhhHHHHHHHH
Confidence 45679999999999999999988873 47887776644322222212222222 111 112222 333556666667
Q ss_pred HHHHHHHHhhccCchhhhhhcchhhHHHHHHHHHHhhcccccccccccchhhhHHHhhhhhh
Q 022504 89 SQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAF 150 (296)
Q Consensus 89 ~~~~~~~gl~~tsa~~asil~~~~Pv~~~ils~~~~~E~~~~~~~~~~~~~iG~~l~~~G~~ 150 (296)
.+.+++.+.+....+.+=.+.++.++...+-+.+++||+-++|++ ....+|+++.++|.+
T Consensus 208 gnl~~~is~~~~G~a~af~lSQ~~vvIStlgGI~il~E~Kt~ke~--~~~~~G~~Liv~G~i 267 (269)
T PF06800_consen 208 GNLFYLISAQKNGVATAFTLSQLGVVISTLGGIFILKEKKTKKEM--IYTLIGLILIVIGAI 267 (269)
T ss_pred HHHHHHHhHHhccchhhhhHHhHHHHHHHhhhheEEEecCchhhH--HHHHHHHHHHHHhhh
Confidence 778899999988888998999999999999999999999665532 234556666666654
No 55
>PRK13499 rhamnose-proton symporter; Provisional
Probab=97.15 E-value=0.027 Score=52.05 Aligned_cols=174 Identities=13% Similarity=0.049 Sum_probs=109.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHH--HHHhhcCC---CCCCCHHHHHHHHHHHH
Q 022504 10 AALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFC--SFLFHRSE---RPQLTFSILCSFFLLSV 84 (296)
Q Consensus 10 ~~~~~l~l~~~~~~wg~~~i~~K~~~~~~~~p~~~~~~R~~~A~l~l~~~--~~~~~r~~---~~~~~~~~~~~~~~~g~ 84 (296)
-..+++..++++++||++++..|..-+.+...++.+ -.+++.++ .|+ .....|.. ....+.+.+...++-|+
T Consensus 5 ~~~G~~~~~i~~~~~GS~~~p~K~~k~w~wE~~W~v--~gi~~wl~-~~~~~g~~~~~~f~~~~~~~~~~~~~~~~l~G~ 81 (345)
T PRK13499 5 IILGIIWHLIGGASSGSFYAPFKKVKKWSWETMWSV--GGIFSWLI-LPWLIAALLLPDFWAYYSSFSGSTLLPVFLFGA 81 (345)
T ss_pred hHHHHHHHHHHHHHhhcccccccccCCCchhHHHHH--HHHHHHHH-HHHHHHHHHhhhHHHHHHhcCHHHHHHHHHHHH
Confidence 456899999999999999999998422222333331 11122222 121 11111111 01234555666666666
Q ss_pred HHHHHHHHHHHHhhccCchhhhhh-cchhhHHHHHHHHHHhhccc---ccccccccchhhhHHHhhhhhhhhhhc---cC
Q 022504 85 FGCSSQIFSFVGIQYSSPTLSTAM-LNLIPAFTFVLAIIFRLEKL---NWENKSSQAKSLGTFASIGGAFVVTFY---KG 157 (296)
Q Consensus 85 ~g~~~~~~~~~gl~~tsa~~asil-~~~~Pv~~~ils~~~~~E~~---~~~~~~~~~~~iG~~l~~~G~~ll~~~---~g 157 (296)
+-...++.++.++++...+.+--+ ..++=+...++..++++|-. +-++ ...-.+|+++.++|+++.... ++
T Consensus 82 ~W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~--g~~~~~gv~liliGi~l~s~Ag~~k~ 159 (345)
T PRK13499 82 LWGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNG--GRMTLLGVLVALIGVAIVGRAGQLKE 159 (345)
T ss_pred HHHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccch--HHHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 667889999999999988877655 46777788888888888653 2222 234678999999999887641 11
Q ss_pred CCCcCCCCCCCCCCcccCCCCCchhHHHHHHHHHHHHHHHHH
Q 022504 158 PPLIGELSHSGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWF 199 (296)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~G~ll~l~aa~~~a~~~ 199 (296)
.+. .. +.....+.-+|.+..+++.+.++.|.
T Consensus 160 ~~~---------~~--~~~~~~~~~KGi~ialisgi~~~~f~ 190 (345)
T PRK13499 160 RKM---------GI--KKAEEFNLKKGLILAVMSGIFSACFS 190 (345)
T ss_pred ccc---------cc--ccccccchHhHHHHHHHHHHHHHHHH
Confidence 100 00 00122345789999999999999999
No 56
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=97.12 E-value=0.013 Score=51.79 Aligned_cols=105 Identities=7% Similarity=0.015 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcCC-CCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 022504 16 GMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSE-RPQLTFSILCSFFLLSVFGCSSQIFSF 94 (296)
Q Consensus 16 ~l~~~~~~wg~~~i~~K~~~~~~~~p~~~~~~R~~~A~l~l~~~~~~~~r~~-~~~~~~~~~~~~~~~g~~g~~~~~~~~ 94 (296)
..+.++++|+...+..|...+ -++......-.. ..++..+......... ......+++..++..|+.+...+.+++
T Consensus 150 ~~l~aa~~~a~~~i~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~t~i~~~l~~ 226 (256)
T TIGR00688 150 EALVLAFSFTAYGLIRKALKN--TDLAGFCLETLS-LMPVAIYYLLQTDFATVQQTNPFPIWLLLVLAGLITGTPLLAFV 226 (256)
T ss_pred HHHHHHHHHHHHHHHHhhcCC--CCcchHHHHHHH-HHHHHHHHHHHhccCcccccCchhHHHHHHHHHHHHHHHHHHHH
Confidence 467789999999999998633 233332222111 1111111111111110 111123578888888877778899999
Q ss_pred HHhhccCchhhhhhcchhhHHHHHHHHHH
Q 022504 95 VGIQYSSPTLSTAMLNLIPAFTFVLAIIF 123 (296)
Q Consensus 95 ~gl~~tsa~~asil~~~~Pv~~~ils~~~ 123 (296)
+|+++.+++.++.+.++.|++..+++.++
T Consensus 227 ~a~~~~~a~~~s~~~yl~Pv~~~~~~~~~ 255 (256)
T TIGR00688 227 IAANRLPLNLLGLLQYIGPTIMMLCVSFL 255 (256)
T ss_pred HHHHcCChHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999998653
No 57
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=97.04 E-value=0.11 Score=46.62 Aligned_cols=213 Identities=15% Similarity=0.097 Sum_probs=130.9
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCchhhhhhcc--hhhHHHH
Q 022504 40 NKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLN--LIPAFTF 117 (296)
Q Consensus 40 ~p~~~~~~R~~~A~l~l~~~~~~~~r~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~gl~~tsa~~asil~~--~~Pv~~~ 117 (296)
+|..+.+..-+.+.++=. +....+++... ..+.+......++.+.....+.+.+++|.|=-+-.+==+ ..|+ +
T Consensus 50 ~~~fL~~~q~l~~~~~s~--~~l~~~k~~~~-~~apl~~y~~is~tn~~s~~~~yeaLKyvSyPtq~LaKscKmIPV--m 124 (327)
T KOG1581|consen 50 HSLFLVFCQRLVALLVSY--AMLKWWKKELS-GVAPLYKYSLISFTNTLSSWCGYEALKYVSYPTQTLAKSCKMIPV--M 124 (327)
T ss_pred ccHHHHHHHHHHHHHHHH--HHHhcccccCC-CCCchhHHhHHHHHhhcchHHHHHHHHhccchHHHHHHHhhhhHH--H
Confidence 455666666666665532 22322332211 122244566777877788889999999997333222222 4554 5
Q ss_pred HHHHHHhhcccccccccccchhhhHHHhhhhhhhhhhccCCCCcCCCCCCCCCCcccCCCCCchhHHHHHHHHHHHHHHH
Q 022504 118 VLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFLAAEAFMNSA 197 (296)
Q Consensus 118 ils~~~~~E~~~~~~~~~~~~~iG~~l~~~G~~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~G~ll~l~aa~~~a~ 197 (296)
+.+.++.+.|.+.+ +.+...+.-.|+.+..+++..+.. +..+..+...|..++...-+.=++
T Consensus 125 lmg~Lvy~~ky~~~------eYl~~~LIs~GvsiF~l~~~s~s~------------~~~g~~ns~~G~~Ll~~~L~fDgf 186 (327)
T KOG1581|consen 125 LMGTLVYGRKYSSF------EYLVAFLISLGVSIFSLFPNSDSS------------SKSGRENSPIGILLLFGYLLFDGF 186 (327)
T ss_pred HHHHHHhcCccCcH------HHHHHHHHHhheeeEEEecCCCCc------------cccCCCCchHhHHHHHHHHHHHhh
Confidence 56778887776554 566666777787776654322100 012223457899999999888889
Q ss_pred HHHHHHHHHHhcc-hhHHHHHHHHHHHHHHHHHHHHHHhcC-CCcce---eccchhHHHHHHHHHhhhHHHHHHHHHHHh
Q 022504 198 WFILQALILRKFA-AVLIIMFYLFFFNTILSTAFALIVVSE-PSDWK---LGLDIGLVAVLYSLLALGFELACAHGACRE 272 (296)
Q Consensus 198 ~~v~~k~~~~~~~-~~~~~~~~~~~~g~i~~~~~~~~~~~~-~~~~~---~~~~~~~~~lly~gv~~t~~ay~l~~~~l~ 272 (296)
-+..|+++.+++. ++..+.+...+++.+...... +.++. ....+ ..++ .+.-++.... +..++....++-++
T Consensus 187 Tn~tQd~lf~~~k~s~~~mM~~vNLf~~i~~~~~l-i~qg~~~~av~F~~~hp~-~~~Di~l~s~-~gavGQ~FI~~TI~ 263 (327)
T KOG1581|consen 187 TNATQDSLFKKYKVSSLHMMFGVNLFSAILNGTYL-ILQGHLLPAVSFIKEHPD-VAFDILLYST-CGAVGQLFIFYTIE 263 (327)
T ss_pred HHhHHHHHhccCCccHhHHHHHHHHHHHHHHHHhh-hcCCCCchHHHHHHcChh-HHHHHHHHHH-hhhhhhheehhhHh
Confidence 9999999988753 457788888888888887763 32221 11111 1222 3343433333 46788889999999
Q ss_pred cCCcee
Q 022504 273 LDLFMY 278 (296)
Q Consensus 273 ~~g~~~ 278 (296)
+-||..
T Consensus 264 ~FGslt 269 (327)
T KOG1581|consen 264 RFGSLT 269 (327)
T ss_pred hcccHH
Confidence 999865
No 58
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=97.01 E-value=0.034 Score=50.63 Aligned_cols=119 Identities=15% Similarity=0.200 Sum_probs=82.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHH-H
Q 022504 9 RAALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFG-C 87 (296)
Q Consensus 9 ~~~~~~l~l~~~~~~wg~~~i~~K~~~~~~~~p~~~~~~R~~~A~l~l~~~~~~~~r~~~~~~~~~~~~~~~~~g~~g-~ 87 (296)
+...+....+.++++-+.....-|..... .+. ... ++ +..++...++ +..+.|+.- .
T Consensus 4 ~~~iGv~lav~ss~~~~~g~~lqk~~~~r-~~~---~~~---------------~~-~~~~~~~l~~--~~W~~G~~~~~ 61 (300)
T PF05653_consen 4 DFYIGVLLAVVSSIFIAVGFNLQKKSHLR-LPR---GSL---------------RA-GSGGRSYLRR--PLWWIGLLLMV 61 (300)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhc---ccc---------------cc-cchhhHHHhh--HHHHHHHHHHh
Confidence 34567778888888888888888876432 000 000 00 0001111122 233455555 6
Q ss_pred HHHHHHHHHhhccCchhhhhhcchhhHHHHHHHHHHhhcccccccccccchhhhHHHhhhhhhhhhhc
Q 022504 88 SSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFY 155 (296)
Q Consensus 88 ~~~~~~~~gl~~tsa~~asil~~~~Pv~~~ils~~~~~E~~~~~~~~~~~~~iG~~l~~~G~~ll~~~ 155 (296)
....+.+.++.+.+++..+-+..+.-++..+++..+++||++++ .++|+.+++.|..+++..
T Consensus 62 ~g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~------~~~G~~l~i~G~~liv~~ 123 (300)
T PF05653_consen 62 LGEILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRR------DIVGCALIILGSVLIVIF 123 (300)
T ss_pred cchHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHh------HHhhHHHHHhhheeeEEe
Confidence 66788899999999999999988999999999999999999776 589999999999887643
No 59
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=96.96 E-value=0.008 Score=48.53 Aligned_cols=108 Identities=18% Similarity=0.113 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc------chhHHHHHHHHHHHHHHHHHHHHHHhcCCCc--ce-ec------cchh
Q 022504 184 GGFFLAAEAFMNSAWFILQALILRKF------AAVLIIMFYLFFFNTILSTAFALIVVSEPSD--WK-LG------LDIG 248 (296)
Q Consensus 184 G~ll~l~aa~~~a~~~v~~k~~~~~~------~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~--~~-~~------~~~~ 248 (296)
|.++++.+.++.|++.+..|+..++. .++..+..+....+.+.+.+..++.|..... .. .. ....
T Consensus 1 G~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 80 (153)
T PF03151_consen 1 GFILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNF 80 (153)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHH
Confidence 56789999999999999999976662 2578888999999999999998888764311 10 00 1122
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHhcCCceeeecccc----cHHHHHHhh
Q 022504 249 LVAVLYSLLALGFELACAHGACRELDLFMYQCSSPW----PLSSLLSWM 293 (296)
Q Consensus 249 ~~~lly~gv~~t~~ay~l~~~~l~~~g~~~~~s~~~----p~~~l~~~~ 293 (296)
+..++..|+ ....-....++.+++.+|.. .++.. +++.+++|+
T Consensus 81 ~~~~~~~~~-~~~~~n~~~f~~i~~tS~lt-~~v~~~~K~~~~i~~s~~ 127 (153)
T PF03151_consen 81 IFLLILSGL-LAFLYNLSSFLLIKLTSPLT-YSVLGNVKRILVILLSVI 127 (153)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHhhhcChhH-HHHHHHHHHHHHHHHHhh
Confidence 444555555 34566678889999999987 56554 444455543
No 60
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=96.93 E-value=0.0028 Score=57.86 Aligned_cols=136 Identities=15% Similarity=0.160 Sum_probs=106.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHHHHH-HHHHHhhcCCC---C--CCCHHHHHHHH
Q 022504 10 AALPSVGMVIVLLAQVSNMEVIKAAMS---KGINKYVIIVYSDALSSLFFL-FCSFLFHRSER---P--QLTFSILCSFF 80 (296)
Q Consensus 10 ~~~~~l~l~~~~~~wg~~~i~~K~~~~---~~~~p~~~~~~R~~~A~l~l~-~~~~~~~r~~~---~--~~~~~~~~~~~ 80 (296)
|+.|......+.+....--++.|..+. ..+|+..+..+---++.+.++ |+....+.... . ..+.+ .....
T Consensus 161 n~~G~i~a~~s~~~~al~~I~~~~ll~~~~~~~~~~~ll~y~ap~s~~~Ll~P~~~~~~~~~~~~~~~~~~~~~-~~~~~ 239 (316)
T KOG1441|consen 161 NLFGFISAMISNLAFALRNILSKKLLTSKGESLNSMNLLYYTAPISLIFLLIPFLDYVEGNKFVGFLTAPWFVT-FLILL 239 (316)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCchHHHHHhhhHHHHHHhcchHhhhcccceeeeeccccchh-hHHHH
Confidence 678999999999999999999999883 358999999999999999999 87665443332 1 22333 33444
Q ss_pred HHHHHHHHHHHHHHHHhhccCchhhhhhcchhhHHHHHHHHHHhhcccccccccccchhhhHHHhhhhhhhh
Q 022504 81 LLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVV 152 (296)
Q Consensus 81 ~~g~~g~~~~~~~~~gl~~tsa~~asil~~~~Pv~~~ils~~~~~E~~~~~~~~~~~~~iG~~l~~~G~~ll 152 (296)
..+++....+...|+.++.+||.+-++....==.++...++++++|+++.. +..|..+++.|+++=
T Consensus 240 ~~sv~~f~~Nls~f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~pvt~~------n~~G~~iai~Gv~~Y 305 (316)
T KOG1441|consen 240 LNSVLAFLLNLSAFLVIGRTSALTYSVAGHMKRIVVIVVSWLIFGNPVTFL------NALGYAIAILGVFLY 305 (316)
T ss_pred HHHHHHHHHHHHHHHHHcccCchhhhhhccceEEEEEEeEeeeecCCCchh------hHHHHHHHHHHHHHH
Confidence 455656777888999999999999888876555556667888889988777 489999999999763
No 61
>PRK13499 rhamnose-proton symporter; Provisional
Probab=96.68 E-value=0.086 Score=48.80 Aligned_cols=145 Identities=12% Similarity=0.002 Sum_probs=87.1
Q ss_pred hhhhHHHHHHHHHHHHHHHH-------HHHHHHHhCCCChHHHHHHHHH---HHHHHHH-HHHHHhh-c-CCCC----C-
Q 022504 9 RAALPSVGMVIVLLAQVSNM-------EVIKAAMSKGINKYVIIVYSDA---LSSLFFL-FCSFLFH-R-SERP----Q- 70 (296)
Q Consensus 9 ~~~~~~l~l~~~~~~wg~~~-------i~~K~~~~~~~~p~~~~~~R~~---~A~l~l~-~~~~~~~-r-~~~~----~- 70 (296)
+..|+...++++.+..+... +.-+.+...+.||.....-.+. ++..+.- .++.++. | ++.+ +
T Consensus 171 ~~~KGi~ialisgi~~~~f~~~~~~~~~~~~~a~~~g~~~~~~~lp~~~~~~~G~~~~n~~~~~~~~~k~~~~~~~~~~~ 250 (345)
T PRK13499 171 NLKKGLILAVMSGIFSACFSFAMDAGKPMHEAAAALGVDPLYAALPSYVVIMGGGAITNLGFCFIRLAKNKDLSLKADFS 250 (345)
T ss_pred chHhHHHHHHHHHHHHHHHHHHHhhccchhhhhhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcccchhcc
Confidence 44789999998888887777 6666654456887766666555 4443322 2223221 2 2111 1
Q ss_pred CC----HHHHHHHHHHHHHHHHHHHHHHHHhhccCchhhhh---hc-chhhHHHHHHHHHHhhcccccccccccchhhhH
Q 022504 71 LT----FSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTA---ML-NLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGT 142 (296)
Q Consensus 71 ~~----~~~~~~~~~~g~~g~~~~~~~~~gl~~tsa~~asi---l~-~~~Pv~~~ils~~~~~E~~~~~~~~~~~~~iG~ 142 (296)
.+ .++.....+-|++-...+.++..|-+......+.+ +. ++.-++..+-+ +++||+-+-.+|..+.-++|+
T Consensus 251 ~~~~~~~~n~l~~~l~G~~W~~~~~~y~~~~~~~g~~~~~~sw~l~m~~~ViistlwG-i~lkE~K~a~~k~~~~l~~G~ 329 (345)
T PRK13499 251 LAKPLLITNVLLSALAGVMWYLQFFFYAMGHSKLGAQYDFVSWMLHMSFYVLCGNLWG-LVLKEWKGASRRPVRVLSLGC 329 (345)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccchHHHHHhccHHHHHHHHhh-hhhhhccCCCccchhHHHHHH
Confidence 12 22223334444444666778888888775555545 55 44445544444 469999774455566778899
Q ss_pred HHhhhhhhhhhh
Q 022504 143 FASIGGAFVVTF 154 (296)
Q Consensus 143 ~l~~~G~~ll~~ 154 (296)
++-+.|.+++..
T Consensus 330 vliI~g~~lig~ 341 (345)
T PRK13499 330 VVIILAANIVGL 341 (345)
T ss_pred HHHHHHHHHHhh
Confidence 999999988763
No 62
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=96.55 E-value=0.009 Score=46.12 Aligned_cols=110 Identities=17% Similarity=0.172 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022504 18 VIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFGCSSQIFSFVGI 97 (296)
Q Consensus 18 ~~~~~~wg~~~i~~K~~~~~~~~p~~~~~~R~~~A~l~l~~~~~~~~r~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~gl 97 (296)
+++.++||...++.|.+.. +.++..-.. |..-....++ .+++ +.+... ++-...+.|++.+
T Consensus 2 l~Vg~~WG~Tnpfik~g~~-~~~~~~~~~-~~~~~~~~Ll-------------~n~~---y~ipf~-lNq~GSv~f~~~L 62 (113)
T PF10639_consen 2 LLVGILWGCTNPFIKRGSS-GLEKVKASL-QLLQEIKFLL-------------LNPK---YIIPFL-LNQSGSVLFFLLL 62 (113)
T ss_pred eeehHHhcCchHHHHHHHh-hcCCccchH-HHHHHHHHHH-------------HhHH---HHHHHH-HHHHHHHHHHHHH
Confidence 4578999999999999865 355443331 3222111110 1233 222221 1344567888999
Q ss_pred hccCchhhhhhc-chhhHHHHHHHHHHhhcccccccccccchhhhHHHhhhhhhhh
Q 022504 98 QYSSPTLSTAML-NLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVV 152 (296)
Q Consensus 98 ~~tsa~~asil~-~~~Pv~~~ils~~~~~E~~~~~~~~~~~~~iG~~l~~~G~~ll 152 (296)
..++-+.+.-+. ++.=++|.+.++++.+|..+++ .++|+.+.+.|+.+.
T Consensus 63 ~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~------~~~G~~Li~~Gv~Lc 112 (113)
T PF10639_consen 63 GSADLSLAVPIANSLAFVFTALTGWLLGEEVISRR------TWLGMALILAGVALC 112 (113)
T ss_pred hcCCceeeehHHhHHHHHHHHHHHHHhcCcccchh------HHHHHHHHHcCeeee
Confidence 999999999886 6777888888876655554433 589999999998653
No 63
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=96.41 E-value=0.12 Score=46.27 Aligned_cols=126 Identities=10% Similarity=0.006 Sum_probs=94.4
Q ss_pred HHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcCC--CCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 022504 19 IVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSE--RPQLTFSILCSFFLLSVFGCSSQIFSFVG 96 (296)
Q Consensus 19 ~~~~~wg~~~i~~K~~~~~~~~p~~~~~~R~~~A~l~l~~~~~~~~r~~--~~~~~~~~~~~~~~~g~~g~~~~~~~~~g 96 (296)
..++.||..+..=|.. ++|+.+=...-...-.+.-+.+.+...-.. ...-+.+++..+...|........++..|
T Consensus 155 ~la~sf~~Ygl~RK~~---~v~a~~g~~lE~l~l~p~al~yl~~l~~~~~~~~~~~~~~~~LLv~aG~vTavpL~lf~~a 231 (293)
T COG2962 155 ALALSFGLYGLLRKKL---KVDALTGLTLETLLLLPVALIYLLFLADSGQFLQQNANSLWLLLVLAGLVTAVPLLLFAAA 231 (293)
T ss_pred HHHHHHHHHHHHHHhc---CCchHHhHHHHHHHHhHHHHHHHHHHhcCchhhhcCCchHHHHHHHhhHHHHHHHHHHHHH
Confidence 3467788888877764 488888777777766666555544432221 11124566777888888888899999999
Q ss_pred hhccCchhhhhhcchhhHHHHHHHHHHhhcccccccccccchhhhHHHhhhhhhhhh
Q 022504 97 IQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVT 153 (296)
Q Consensus 97 l~~tsa~~asil~~~~Pv~~~ils~~~~~E~~~~~~~~~~~~~iG~~l~~~G~~ll~ 153 (296)
-+..+-+.-++++|..|.+..+++.++++|+++.- |.++-+..-+|+++..
T Consensus 232 a~~lpls~~G~lqYi~Ptl~fllav~i~~E~~~~~------~~~~F~~IW~aL~l~~ 282 (293)
T COG2962 232 AKRLPLSTLGFLQYIEPTLMFLLAVLIFGEPFDSD------QLVTFAFIWLALALFS 282 (293)
T ss_pred HhcCCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHH------HHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999765 4667666667766544
No 64
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=96.25 E-value=0.094 Score=40.31 Aligned_cols=60 Identities=12% Similarity=0.020 Sum_probs=49.3
Q ss_pred HHHHHHHHHHhhccCchhhh-hhcchhhHHHHHHHHHHhhcccccccccccchhhhHHHhhhhhhhh
Q 022504 87 CSSQIFSFVGIQYSSPTLST-AMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVV 152 (296)
Q Consensus 87 ~~~~~~~~~gl~~tsa~~as-il~~~~Pv~~~ils~~~~~E~~~~~~~~~~~~~iG~~l~~~G~~ll 152 (296)
...+.+...++++.+.+.|= +....--+.+.+.+.++++|++++. |++|+.+.+.|++.+
T Consensus 46 ~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~------~~~gi~lIi~GVi~l 106 (109)
T PRK10650 46 LAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRK------GWIGLVLLLAGMVMI 106 (109)
T ss_pred HHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHH------HHHHHHHHHHHHHHh
Confidence 56777888899999877664 4456777888999999999998876 599999999999765
No 65
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=95.90 E-value=0.01 Score=52.38 Aligned_cols=135 Identities=16% Similarity=0.119 Sum_probs=97.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHH
Q 022504 11 ALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFGCSSQ 90 (296)
Q Consensus 11 ~~~~l~l~~~~~~wg~~~i~~K~~~~~~~~p~~~~~~R~~~A~l~l~~~~~~~~r~~~~~~~~~~~~~~~~~g~~g~~~~ 90 (296)
.++..+.+.+++.-+...+..|.. .+..+....+.+=.+++.+.-+..+.... +...+..+||++.+..+|+.|.+.|
T Consensus 190 ~~gt~aai~s~lf~asvyIilR~i-Gk~~h~~msvsyf~~i~lV~s~I~~~~ig-~~~lP~cgkdr~l~~~lGvfgfigQ 267 (346)
T KOG4510|consen 190 IPGTVAAISSVLFGASVYIILRYI-GKNAHAIMSVSYFSLITLVVSLIGCASIG-AVQLPHCGKDRWLFVNLGVFGFIGQ 267 (346)
T ss_pred CCchHHHHHhHhhhhhHHHHHHHh-hccccEEEEehHHHHHHHHHHHHHHhhcc-ceecCccccceEEEEEehhhhhHHH
Confidence 345666677777777778888875 44567666666666666555444332222 2222345678888888999999999
Q ss_pred HHHHHHhhccCchhhhhhcchhhHHHHHHHHHHhhcccccccccccchhhhHHHhhhhhhhhh
Q 022504 91 IFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVT 153 (296)
Q Consensus 91 ~~~~~gl~~tsa~~asil~~~~Pv~~~ils~~~~~E~~~~~~~~~~~~~iG~~l~~~G~~ll~ 153 (296)
++...|+|.-.++-.+++.++.-++..+.-.++++|-+ +.+.|.|.++...-.+...
T Consensus 268 IllTm~lQiErAGpvaim~~~dvvfAf~wqv~ff~~~P------t~ws~~Ga~~vvsS~v~~a 324 (346)
T KOG4510|consen 268 ILLTMGLQIERAGPVAIMTYTDVVFAFFWQVLFFGHWP------TIWSWVGAVMVVSSTVWVA 324 (346)
T ss_pred HHHHHHhhhhccCCeehhhHHHHHHHHHHHHHHhcCCC------hHHHhhceeeeehhHHHHH
Confidence 99999999999999999999999999999999988764 4556777766555555444
No 66
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=95.84 E-value=0.23 Score=39.87 Aligned_cols=107 Identities=16% Similarity=0.173 Sum_probs=71.3
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCchhhhhhcch-hhHHHHH
Q 022504 40 NKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNL-IPAFTFV 118 (296)
Q Consensus 40 ~p~~~~~~R~~~A~l~l~~~~~~~~r~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~gl~~tsa~~asil~~~-~Pv~~~i 118 (296)
||+.-.+.-+..+.+++..+....+++..++.+ +.-++...-|++|..+..+..+......++++..+.-+ +=+...+
T Consensus 29 s~~~as~i~~~~G~i~~~i~~~~~~~~~~~~~~-~~p~w~~lGG~lG~~~V~~~~~~vp~lG~~~~~~l~~~GQl~~sl~ 107 (138)
T PF04657_consen 29 SPLVASFISFGVGFILLLIILLITGRPSLASLS-SVPWWAYLGGLLGVFFVLSNIILVPRLGAALTTILIVAGQLIASLL 107 (138)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHhcccccchhc-cCChHHhccHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Confidence 599999999999999988877665443222111 11124445778887778888889999998888877654 4344444
Q ss_pred HHHH--HhhcccccccccccchhhhHHHhhhhhhh
Q 022504 119 LAII--FRLEKLNWENKSSQAKSLGTFASIGGAFV 151 (296)
Q Consensus 119 ls~~--~~~E~~~~~~~~~~~~~iG~~l~~~G~~l 151 (296)
+.++ +..|| ++.+..|.+|+.+.++|+++
T Consensus 108 iD~fG~fg~~~----~~~~~~r~lG~~l~i~Gv~L 138 (138)
T PF04657_consen 108 IDHFGLFGAPK----RPFSLRRILGLALMIAGVIL 138 (138)
T ss_pred HHHccccCCCC----CCCCHHHHHHHHHHHHHHhC
Confidence 5553 21222 22344579999999999853
No 67
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=95.77 E-value=0.037 Score=43.30 Aligned_cols=67 Identities=16% Similarity=0.162 Sum_probs=54.6
Q ss_pred HHHHH-HHHHHHHHHHhhccCchhhhhh-cchhhHHHHHHHHHHhhcccccccccccchhhhHHHhhhhhhhhhh
Q 022504 82 LSVFG-CSSQIFSFVGIQYSSPTLSTAM-LNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTF 154 (296)
Q Consensus 82 ~g~~g-~~~~~~~~~gl~~tsa~~asil-~~~~Pv~~~ils~~~~~E~~~~~~~~~~~~~iG~~l~~~G~~ll~~ 154 (296)
..+.. ...+.+...++++.+.+.|=.+ ....-+.+.+++.++++|+++++ |++|+.+.++|++.+-.
T Consensus 35 ~~i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~------~~~gi~lIi~GVi~l~l 103 (120)
T PRK10452 35 LMLVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLM------KIAGLTTLVAGIVLIKS 103 (120)
T ss_pred HHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHhhc
Confidence 34445 6778888999999988877555 46777888999999999999877 59999999999988753
No 68
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=95.76 E-value=0.13 Score=39.68 Aligned_cols=65 Identities=15% Similarity=0.234 Sum_probs=51.8
Q ss_pred HHHH-HHHHHHHHHHhhccCchhhhhh-cchhhHHHHHHHHHHhhcccccccccccchhhhHHHhhhhhhhhh
Q 022504 83 SVFG-CSSQIFSFVGIQYSSPTLSTAM-LNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVT 153 (296)
Q Consensus 83 g~~g-~~~~~~~~~gl~~tsa~~asil-~~~~Pv~~~ils~~~~~E~~~~~~~~~~~~~iG~~l~~~G~~ll~ 153 (296)
.+.+ ...+.+...++++.+.+.|=.+ ..+.-+.+.++++++++|++++. |++|+.+.++|++.+-
T Consensus 36 ~~~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~------~~~gi~lIi~GVi~l~ 102 (110)
T PRK09541 36 TIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLP------AIIGMMLICAGVLVIN 102 (110)
T ss_pred HHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHHh
Confidence 3445 6677777888888887776544 45667788899999999999877 5999999999998875
No 69
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=95.60 E-value=0.096 Score=38.97 Aligned_cols=56 Identities=18% Similarity=0.110 Sum_probs=32.3
Q ss_pred HHHH-HHHHHHHHHHhhccCchhh-hhhcchhhHHHHHHHHHHhhcccccccccccchhhhHHH
Q 022504 83 SVFG-CSSQIFSFVGIQYSSPTLS-TAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFA 144 (296)
Q Consensus 83 g~~g-~~~~~~~~~gl~~tsa~~a-sil~~~~Pv~~~ils~~~~~E~~~~~~~~~~~~~iG~~l 144 (296)
.+.+ ...+.++..++++.+.+.+ ++...+..+.+.+.+..+++|+++.+| ++|+.+
T Consensus 35 ~~~~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~------~~gi~l 92 (93)
T PF00893_consen 35 AVVGYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSK------WLGIGL 92 (93)
T ss_dssp HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------------HHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHH------Hhheee
Confidence 3434 6778899999999998888 555678899999999999999998874 777654
No 70
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=95.57 E-value=0.1 Score=39.67 Aligned_cols=65 Identities=14% Similarity=0.100 Sum_probs=53.6
Q ss_pred HHHH-HHHHHHHHHHhhccCchhh-hhhcchhhHHHHHHHHHHhhcccccccccccchhhhHHHhhhhhhhhh
Q 022504 83 SVFG-CSSQIFSFVGIQYSSPTLS-TAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVT 153 (296)
Q Consensus 83 g~~g-~~~~~~~~~gl~~tsa~~a-sil~~~~Pv~~~ils~~~~~E~~~~~~~~~~~~~iG~~l~~~G~~ll~ 153 (296)
.+.+ ...+.+...++|+.+.+.| ++....--+.+.+.++++++||.+.. |++|+.+.++|++.+-
T Consensus 36 ~~v~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~------~~~gl~LiiaGvi~Lk 102 (106)
T COG2076 36 TIVGYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLI------KLLGLALILAGVIGLK 102 (106)
T ss_pred HHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHH------HHHHHHHHHHHHHHhh
Confidence 3445 6778888999999997776 45567788889999999999999876 6999999999998764
No 71
>PRK11431 multidrug efflux system protein; Provisional
Probab=95.35 E-value=0.24 Score=37.79 Aligned_cols=64 Identities=9% Similarity=-0.042 Sum_probs=52.2
Q ss_pred HHH-HHHHHHHHHHhhccCchhhh-hhcchhhHHHHHHHHHHhhcccccccccccchhhhHHHhhhhhhhhh
Q 022504 84 VFG-CSSQIFSFVGIQYSSPTLST-AMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVT 153 (296)
Q Consensus 84 ~~g-~~~~~~~~~gl~~tsa~~as-il~~~~Pv~~~ils~~~~~E~~~~~~~~~~~~~iG~~l~~~G~~ll~ 153 (296)
+.+ ...+.+...++++.+.+.|= +....--+.+.+++.++++|++++. |++|+.+.+.|++.+-
T Consensus 36 i~~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~------~~~gi~lIi~GVv~l~ 101 (105)
T PRK11431 36 VTAMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPA------RLLSLALIVAGIIGLK 101 (105)
T ss_pred HHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHhhh
Confidence 444 67778888999999877664 4456777888999999999999877 5999999999998763
No 72
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.42 E-value=2 Score=34.82 Aligned_cols=138 Identities=8% Similarity=-0.017 Sum_probs=73.6
Q ss_pred hhHHHHHHHHHHHHHHHHHH-HHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHH
Q 022504 11 ALPSVGMVIVLLAQVSNMEV-IKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFGCSS 89 (296)
Q Consensus 11 ~~~~l~l~~~~~~wg~~~i~-~K~~~~~~~~p~~~~~~R~~~A~l~l~~~~~~~~r~~~~~~~~~~~~~~~~~g~~g~~~ 89 (296)
+...+..+.+..+-.....+ ++.. +..=+|+.-.+..+..+..++..+.+..+++.......+.-++...-|++|..+
T Consensus 4 ~l~ll~~i~aG~~l~~Q~~iN~qL~-~~~~spl~As~isf~vGt~~L~~l~l~~~~~~~~a~~~~~pwW~~~GG~lGa~~ 82 (150)
T COG3238 4 YLYLLFAILAGALLPLQAAINGRLA-RYLGSPLLASLISFLVGTVLLLILLLIKQGHPGLAAVASAPWWAWIGGLLGAIF 82 (150)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHH-HHcCChHHHHHHHHHHHHHHHHHHHHHhcCCCchhhccCCchHHHHccchhhhh
Confidence 33444444444444433333 4444 322369999999999999998888776332222121122223444555666444
Q ss_pred HHHHHHHhhccCchhhhhh-cchhhHHHHHHHHH-HhhcccccccccccchhhhHHHhhhhhhhh
Q 022504 90 QIFSFVGIQYSSPTLSTAM-LNLIPAFTFVLAII-FRLEKLNWENKSSQAKSLGTFASIGGAFVV 152 (296)
Q Consensus 90 ~~~~~~gl~~tsa~~asil-~~~~Pv~~~ils~~-~~~E~~~~~~~~~~~~~iG~~l~~~G~~ll 152 (296)
-...........++....+ ..-+=+.-.++..+ .++++ ++.++..|++|+++.++|++++
T Consensus 83 vt~s~~l~p~lGa~~t~~l~i~gQli~glliD~fG~~g~~---~~~~~~~r~lgi~L~l~gil~~ 144 (150)
T COG3238 83 VTSSILLAPRLGAATTIALVIAGQLIMGLLIDHFGWFGVP---KRPLNLPRILGILLVLAGILLA 144 (150)
T ss_pred hhhhHHhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCC---cCCCCHHHHHHHHHHHHHHHHh
Confidence 4444444444444433333 33344444444433 22232 2345677899999999995443
No 73
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.32 E-value=0.84 Score=41.44 Aligned_cols=138 Identities=17% Similarity=0.222 Sum_probs=97.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHHHHHHHHHHhhc-C----CCCCC-CHHHHHHHHHH
Q 022504 10 AALPSVGMVIVLLAQVSNMEVIKAAMS-KGINKYVIIVYSDALSSLFFLFCSFLFHR-S----ERPQL-TFSILCSFFLL 82 (296)
Q Consensus 10 ~~~~~l~l~~~~~~wg~~~i~~K~~~~-~~~~p~~~~~~R~~~A~l~l~~~~~~~~r-~----~~~~~-~~~~~~~~~~~ 82 (296)
+..+|.++....+.=....+-.|..++ .+.+-+.++++..+++.+.+....+..+- + ..+.. +...+..+.+-
T Consensus 155 ~~~gY~w~~~n~~~~a~~~v~~kk~vd~~~l~~~~lv~yNnl~~L~~l~~~~~~~ge~~~l~~~~~~~~~~~~~~~~~lS 234 (314)
T KOG1444|consen 155 NLRGYSWALANCLTTAAFVVYVKKSVDSANLNKFGLVFYNNLLSLPPLLILSFITGELDALSLNFDNWSDSSVLVVMLLS 234 (314)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHhhccccccceeEEeehhHHHHHHHHHHHHHhcchHHHHhhcccccchhHHHHHHHH
Confidence 445788888888888888888998776 46788999999999999988777654321 0 11111 12233445555
Q ss_pred HHHHHHHHHHHHHHhhccCchhhhhhcchhhHHHHHHHHHHhhcccccccccccchhhhHHHhhhhhhhhh
Q 022504 83 SVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVT 153 (296)
Q Consensus 83 g~~g~~~~~~~~~gl~~tsa~~asil~~~~Pv~~~ils~~~~~E~~~~~~~~~~~~~iG~~l~~~G~~ll~ 153 (296)
+++|.+-.++.++..+.+|+.+-++.....-..+.+...++.+++.++. ..+|+.+++.|-++=.
T Consensus 235 cv~gf~isy~s~~ct~~~SAtT~tivG~~n~l~t~l~~ll~~d~~~~~~------n~~gll~~~~ggv~Y~ 299 (314)
T KOG1444|consen 235 CVMGFGISYTSFLCTRVNSATTTTIVGAKNKLLTYLGGLLFGDKPFTFL------NVIGLLVGFFGGVLYS 299 (314)
T ss_pred HHHHHHHHHHHHHHHhhccccceeehhhhhhHHHHHHHHhcCCceechh------hhHHHHHHhhhhhHHh
Confidence 5566777888889999999999988885555555555555666666554 6899999999986643
No 74
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=93.31 E-value=0.97 Score=41.98 Aligned_cols=139 Identities=12% Similarity=0.157 Sum_probs=101.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHhC---CCChHHHHHHHHHHHHHHHHHHHHHhhc---CCCCCCCHHHHHHHHHH
Q 022504 9 RAALPSVGMVIVLLAQVSNMEVIKAAMSK---GINKYVIIVYSDALSSLFFLFCSFLFHR---SERPQLTFSILCSFFLL 82 (296)
Q Consensus 9 ~~~~~~l~l~~~~~~wg~~~i~~K~~~~~---~~~p~~~~~~R~~~A~l~l~~~~~~~~r---~~~~~~~~~~~~~~~~~ 82 (296)
+...|-++.+++++.+|..-+..|.=.+. .+|--.+..+=.++..++++|..+..++ ++.+-++..+...++..
T Consensus 244 ~~llG~llaL~sA~~YavY~vllk~~~~~eg~rvdi~lffGfvGLfnllllwP~l~iL~~~~~e~F~lP~~~q~~~vv~~ 323 (416)
T KOG2765|consen 244 RPLLGNLLALLSALLYAVYTVLLKRKIGDEGERVDIQLFFGFVGLFNLLLLWPPLIILDFFGEERFELPSSTQFSLVVFN 323 (416)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHhHHHHHHHHhccCcccCCCCceeEeeeHh
Confidence 34678999999999999999999986543 3677777777788888888876654332 22222334556667788
Q ss_pred HHHH-HHHHHHHHHHhhccCchhhhhhcc-hhhHHHHHHHHHHhhcccccccccccchhhhHHHhhhhhhhhhh
Q 022504 83 SVFG-CSSQIFSFVGIQYSSPTLSTAMLN-LIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTF 154 (296)
Q Consensus 83 g~~g-~~~~~~~~~gl~~tsa~~asil~~-~~Pv~~~ils~~~~~E~~~~~~~~~~~~~iG~~l~~~G~~ll~~ 154 (296)
++++ ...=+++.+|.-.|++-.+++=+. +.|+ .++.-.++++.+ |+...++|....+.|-+.+..
T Consensus 324 ~ligtvvSDylW~~a~~lTs~Lv~TlgmSltIPL-A~~aD~l~k~~~------~S~~~iiGsi~Ifv~Fv~vn~ 390 (416)
T KOG2765|consen 324 NLIGTVVSDYLWAKAVLLTSPLVVTLGMSLTIPL-AMFADVLIKGKH------PSALYIIGSIPIFVGFVIVNI 390 (416)
T ss_pred hHHHHHHHHHHHHHHHHhccchhheeeeeEeeeH-HHHHHHHHcCCC------CCHHHHHHHHHHHHHHhheec
Confidence 8999 899999999999999998887765 4554 444555554444 456679999999999877753
No 75
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=93.09 E-value=2.1 Score=37.14 Aligned_cols=211 Identities=15% Similarity=0.145 Sum_probs=121.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCchhhhhhcchhhHHHHHHH
Q 022504 41 KYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLA 120 (296)
Q Consensus 41 p~~~~~~R~~~A~l~l~~~~~~~~r~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~gl~~tsa~~asil~~~~Pv~~~ils 120 (296)
-+.+.+.+.....+-++.+-+.+- -+.+.++.+..+..+++-.........+++|.+...-+++-++.-+.+...-
T Consensus 37 nflll~vQSlvcvv~l~iLk~l~~----~~fR~t~aK~WfpiSfLLv~MIyt~SKsLqyL~vpiYTiFKNltII~iAygE 112 (309)
T COG5070 37 NFLLLAVQSLVCVVGLLILKFLRL----VEFRLTKAKKWFPISFLLVVMIYTSSKSLQYLAVPIYTIFKNLTIILIAYGE 112 (309)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhH----hheehhhhhhhcCHHHHHHHHHHhcccceeeeeeeHHHHhccceeehhHhhH
Confidence 356666776666655554322211 1112233334444555444444556678999999999999888877777666
Q ss_pred HHHhhcccccccccccchhhhHHHhhhhhhhhhhccCCCCcCCCCCCCCCCcccCCCCCchhHHHHHHHHHHHHHHHHHH
Q 022504 121 IIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFI 200 (296)
Q Consensus 121 ~~~~~E~~~~~~~~~~~~~iG~~l~~~G~~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~G~ll~l~aa~~~a~~~v 200 (296)
..+++.|++-. +.....+-+.--+.-. .|+. |... .. ....+.|-+++...+++-|.|..
T Consensus 113 vl~Fgg~vtsl------~l~SFilMvlSS~va~--w~D~-------q~~~----~~-~~~lN~GY~Wm~~NclssaafVL 172 (309)
T COG5070 113 VLFFGGRVTSL------ELLSFILMVLSSVVAT--WGDQ-------QASA----FK-AQILNPGYLWMFTNCLSSAAFVL 172 (309)
T ss_pred HHHhcCccchh------hHHHHHHHHHHHHHhc--cchh-------hHHH----HH-hcccCCceEEEehhhHhHHHHHH
Confidence 67777776432 2333333333322211 1111 0000 00 11235689999999999999999
Q ss_pred HHHHHHHh--cchhHHHHHHHHHHHHHHHHHHHHHHhcC-CCcce-eccchhHHHHHHHHHhhhHHHHHHHHHHHhcCCc
Q 022504 201 LQALILRK--FAAVLIIMFYLFFFNTILSTAFALIVVSE-PSDWK-LGLDIGLVAVLYSLLALGFELACAHGACRELDLF 276 (296)
Q Consensus 201 ~~k~~~~~--~~~~~~~~~~~~~~g~i~~~~~~~~~~~~-~~~~~-~~~~~~~~~lly~gv~~t~~ay~l~~~~l~~~g~ 276 (296)
..||..+- ..| +.-.++..+.+...++.+.+++|+. +.... ..+.+...++...|+.+-+++|. -.|+++-.++
T Consensus 173 ~mrkri~ltNf~d-~dtmfYnNllslPiL~~~s~~~edws~~n~annl~~d~l~am~ISgl~svgiSy~-saWcvrVtSS 250 (309)
T COG5070 173 IMRKRIKLTNFKD-FDTMFYNNLLSLPILLSFSFLFEDWSPGNLANNLSVDSLMAMFISGLCSVGISYC-SAWCVRVTSS 250 (309)
T ss_pred HHHHhhcccccch-hhHHHHhhhHHHHHHHHHHHHhccCCcchhhcCCChHHHHHHHHHHHHHhhhhhc-cceeEeehhh
Confidence 98886543 222 4567888899888888888777652 22111 11223455677788866666664 3556665444
Q ss_pred e
Q 022504 277 M 277 (296)
Q Consensus 277 ~ 277 (296)
+
T Consensus 251 T 251 (309)
T COG5070 251 T 251 (309)
T ss_pred h
Confidence 4
No 76
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=92.70 E-value=0.29 Score=42.60 Aligned_cols=73 Identities=18% Similarity=0.270 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCchhhhhhcchhhHHHHHHHHHHhhcccccccccccchhhhHHHhhhhhhhhh
Q 022504 75 ILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVT 153 (296)
Q Consensus 75 ~~~~~~~~g~~g~~~~~~~~~gl~~tsa~~asil~~~~Pv~~~ils~~~~~E~~~~~~~~~~~~~iG~~l~~~G~~ll~ 153 (296)
.+..+..+++.+++.|.+.|.-+.+-+|-+-+++..+--+|+++.+.+++.++++.| +|+|.++-+.|...=.
T Consensus 240 ~~~~l~l~ai~s~LGQ~fIF~tv~~FgPLtCSivTTTRKfFTil~SVllf~npls~r------QwlgtvlVF~aL~~D~ 312 (337)
T KOG1580|consen 240 VFWDLTLLAIASCLGQWFIFKTVEEFGPLTCSIVTTTRKFFTILISVLLFNNPLSGR------QWLGTVLVFSALTADV 312 (337)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHhCCeeEEEEeehHHHHHHHHHHHHhcCcCcHH------HHHHHHHHHHHhhhHh
Confidence 345577788888888999999999999999999999999999999999999999877 5899999999876543
No 77
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=92.42 E-value=0.7 Score=39.80 Aligned_cols=59 Identities=12% Similarity=0.073 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHhhccCchhhhhhcchhhHHHHHHHHHHhhcccccccccccchhhhHHHhhhhhh
Q 022504 86 GCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAF 150 (296)
Q Consensus 86 g~~~~~~~~~gl~~tsa~~asil~~~~Pv~~~ils~~~~~E~~~~~~~~~~~~~iG~~l~~~G~~ 150 (296)
+...+.+..+-++|.++..-+....+.++++.+++.++++|+++.. +++|..+.+.|+.
T Consensus 162 ~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~------~~~g~~lV~~~~~ 220 (222)
T TIGR00803 162 NVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISST------FYLGAILVFLATF 220 (222)
T ss_pred HHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHH------HHHHHHHHHeeeE
Confidence 3555667888899999999999999999999999999999998766 5899999888864
No 78
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.18 E-value=0.1 Score=47.25 Aligned_cols=118 Identities=16% Similarity=0.137 Sum_probs=87.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHH-H
Q 022504 9 RAALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFG-C 87 (296)
Q Consensus 9 ~~~~~~l~l~~~~~~wg~~~i~~K~~~~~~~~p~~~~~~R~~~A~l~l~~~~~~~~r~~~~~~~~~~~~~~~~~g~~g-~ 87 (296)
++.++....+.+.++.|+++++-|..... ... . -.+..+ .+..-.++ +..+.|++- .
T Consensus 18 d~~~G~~LaissS~~Ig~sfilkKkgl~r-----------~~~-----~---~~ra~~-gg~~yl~~--~~Ww~G~ltm~ 75 (335)
T KOG2922|consen 18 DNIIGLVLAISSSIFIGSSFILKKKGLKR-----------AGA-----S---GLRAGE-GGYGYLKE--PLWWAGMLTMI 75 (335)
T ss_pred CceeeeeehhhccEEEeeehhhhHHHHHH-----------Hhh-----h---cccccC-CCcchhhh--HHHHHHHHHHH
Confidence 56778888889999999999999987643 100 0 011111 11111233 334566666 6
Q ss_pred HHHHHHHHHhhccCchhhhhhcchhhHHHHHHHHHHhhcccccccccccchhhhHHHhhhhhhhhhh
Q 022504 88 SSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTF 154 (296)
Q Consensus 88 ~~~~~~~~gl~~tsa~~asil~~~~Pv~~~ils~~~~~E~~~~~~~~~~~~~iG~~l~~~G~~ll~~ 154 (296)
......|-+..+.+++..+-+-.+.-+.-.+++..++|||++++. .+|..+|+.|-.+++.
T Consensus 76 vGei~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g------~lGc~l~v~Gst~iV~ 136 (335)
T KOG2922|consen 76 VGEIANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLLG------ILGCVLCVVGSTTIVI 136 (335)
T ss_pred HHhHhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHhh------hhheeEEecccEEEEE
Confidence 677778888999999999999999999999999999999998874 7899999999999884
No 79
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=91.57 E-value=2.7 Score=38.08 Aligned_cols=138 Identities=15% Similarity=0.159 Sum_probs=97.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCC-----CCCHHHHHHHHHH
Q 022504 9 RAALPSVGMVIVLLAQVSNMEVIKAAMS-KGINKYVIIVYSDALSSLFFLFCSFLFHRSERP-----QLTFSILCSFFLL 82 (296)
Q Consensus 9 ~~~~~~l~l~~~~~~wg~~~i~~K~~~~-~~~~p~~~~~~R~~~A~l~l~~~~~~~~r~~~~-----~~~~~~~~~~~~~ 82 (296)
+...++..++.-.+.=|.....-+.... ..++++.+.+.-.+..++.=.... ......++ +.++.-++.+++.
T Consensus 169 ns~~G~~Ll~~~L~fDgfTn~tQd~lf~~~k~s~~~mM~~vNLf~~i~~~~~l-i~qg~~~~av~F~~~hp~~~~Di~l~ 247 (327)
T KOG1581|consen 169 NSPIGILLLFGYLLFDGFTNATQDSLFKKYKVSSLHMMFGVNLFSAILNGTYL-ILQGHLLPAVSFIKEHPDVAFDILLY 247 (327)
T ss_pred CchHhHHHHHHHHHHHhhHHhHHHHHhccCCccHhHHHHHHHHHHHHHHHHhh-hcCCCCchHHHHHHcChhHHHHHHHH
Confidence 3455666666544444555544444443 468999999998888777655442 22222222 2234456678888
Q ss_pred HHHHHHHHHHHHHHhhccCchhhhhhcchhhHHHHHHHHHHhhcccccccccccchhhhHHHhhhhhhhhh
Q 022504 83 SVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVT 153 (296)
Q Consensus 83 g~~g~~~~~~~~~gl~~tsa~~asil~~~~Pv~~~ils~~~~~E~~~~~~~~~~~~~iG~~l~~~G~~ll~ 153 (296)
+.+|...|.+.++-++.=.+-.-+.++.+--++..+++.+.+++++++.| |+|+.+-|.|+.+=.
T Consensus 248 s~~gavGQ~FI~~TI~~FGslt~t~I~ttRk~~si~lS~i~f~h~~s~~q------~~g~~iVFg~i~l~~ 312 (327)
T KOG1581|consen 248 STCGAVGQLFIFYTIERFGSLTFTTIMTTRKMVSIMLSCIVFGHPLSSEQ------WLGVLIVFGGIFLEI 312 (327)
T ss_pred HHhhhhhhheehhhHhhcccHHHHHHHHHHHHHHHHHHHHHhCCccchhh------ccCeeeehHHHHHHH
Confidence 99898889998888888888888888889999999999999999998885 788888888887654
No 80
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=90.72 E-value=3.6 Score=36.74 Aligned_cols=211 Identities=12% Similarity=0.130 Sum_probs=111.6
Q ss_pred CccccchhhhHHHHHHHHHH-HHHHHHHHHHHHHh-CCCChH--HHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHH
Q 022504 3 VDMGSMRAALPSVGMVIVLL-AQVSNMEVIKAAMS-KGINKY--VIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCS 78 (296)
Q Consensus 3 ~~~~~~~~~~~~l~l~~~~~-~wg~~~i~~K~~~~-~~~~p~--~~~~~R~~~A~l~l~~~~~~~~r~~~~~~~~~~~~~ 78 (296)
.|+...+|+.-.+....+.+ .+=.++..-.+..+ .++.|+ .+...++..-..+-+.-....+ .+++..++|.
T Consensus 33 ~~ls~kpkw~QFlic~~g~Ff~Yl~yGy~qElif~~~gfkp~GWylTlvQf~~Ysg~glie~~~~~-~k~r~iP~rt--- 108 (367)
T KOG1582|consen 33 FNLSDKPKWTQFLICSAGVFFLYLVYGYLQELIFNVEGFKPFGWYLTLVQFLVYSGFGLIELQLIQ-TKRRVIPWRT--- 108 (367)
T ss_pred eccccCchhhhHHHHHhHHHHHHHHHHHHHHHHhccccCcccchHHHHHHHHHHHhhhheEEEeec-ccceecchhH---
Confidence 34445556554443322221 12233334444332 246654 4555555554333222111111 1122245554
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCchhhhhhcc--hhhHHHHHHHHHHhhcccccccccccchhhhHHHhhhhhhhhhhcc
Q 022504 79 FFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLN--LIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYK 156 (296)
Q Consensus 79 ~~~~g~~g~~~~~~~~~gl~~tsa~~asil~~--~~Pv~~~ils~~~~~E~~~~~~~~~~~~~iG~~l~~~G~~ll~~~~ 156 (296)
...++.+..+.+.+..-++.|.+=-+-.++-+ +.|++ +-+.++-+.| ++....++..+-.+|.++.++.+
T Consensus 109 Y~~la~~t~gtmGLsn~SlgYLNYPtQviFKccKliPVm--iggifIqGkR------Y~v~d~~aA~lm~lGli~FTLAD 180 (367)
T KOG1582|consen 109 YVILAFLTVGTMGLSNGSLGYLNYPTQVIFKCCKLIPVM--IGGIFIQGKR------YGVHDYIAAMLMSLGLIWFTLAD 180 (367)
T ss_pred hhhhHhhhhhccccCcCccccccCcHHHHHHhhhhhhhh--heeeeecccc------ccHHHHHHHHHHHHHHHhhhhcc
Confidence 33444444344444445555554333333333 45553 3455554444 45567889999999998877542
Q ss_pred CCCCcCCCCCCCCCCcccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcch-hHHHHHHHHHHHHHHHHHHHHHHh
Q 022504 157 GPPLIGELSHSGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFAA-VLIIMFYLFFFNTILSTAFALIVV 235 (296)
Q Consensus 157 g~~~~~~~~~~~~~~~~~~~~~~~~~~G~ll~l~aa~~~a~~~v~~k~~~~~~~~-~~~~~~~~~~~g~i~~~~~~~~~~ 235 (296)
.. .+.+. +..|..+.-+|-++=|.-.-+|+|..+..+. .-.+.+++..+|.+.........+
T Consensus 181 s~----------------~sPNF-~~~Gv~mIsgALl~DA~iGNvQEk~m~~~~~ss~EmvfySy~iG~vflf~~mvlTg 243 (367)
T KOG1582|consen 181 SQ----------------TSPNF-NLIGVMMISGALLADAVIGNVQEKAMKMNPASSSEMVFYSYGIGFVFLFAPMVLTG 243 (367)
T ss_pred cc----------------cCCCc-ceeeHHHHHHHHHHHHHhhHHHHHHHhhCCCCcceEEEeeecccHHHHHHHHHhcc
Confidence 21 11111 2568888888888888888899998888763 235667777888887776665555
Q ss_pred cCCCcce
Q 022504 236 SEPSDWK 242 (296)
Q Consensus 236 ~~~~~~~ 242 (296)
+-.+.|+
T Consensus 244 e~f~a~~ 250 (367)
T KOG1582|consen 244 ELFSAWT 250 (367)
T ss_pred cchhhhH
Confidence 4444453
No 81
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=90.67 E-value=2.7 Score=33.61 Aligned_cols=90 Identities=12% Similarity=-0.051 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHhcCCCcceeccchhHHHHHHHHHhhhHHHH
Q 022504 185 GFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVAVLYSLLALGFELA 264 (296)
Q Consensus 185 ~ll~l~aa~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~lly~gv~~t~~ay 264 (296)
.++.+.+...-+....+..++.++..+|..-+.+.+..|.+.+..+..+.++. ++....+..|+..+ -|++ ...--
T Consensus 3 ~lla~~aG~~i~~q~~~N~~L~~~~gs~~~as~i~~~~G~i~~~i~~~~~~~~--~~~~~~~~p~w~~l-GG~l-G~~~V 78 (138)
T PF04657_consen 3 ILLALLAGALIALQAAFNGQLGKALGSPLVASFISFGVGFILLLIILLITGRP--SLASLSSVPWWAYL-GGLL-GVFFV 78 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHhccc--ccchhccCChHHhc-cHHH-HHHHH
Confidence 46778888899999999999999986688889999999999988887766553 22211112233332 4443 44555
Q ss_pred HHHHHHHhcCCcee
Q 022504 265 CAHGACRELDLFMY 278 (296)
Q Consensus 265 ~l~~~~l~~~g~~~ 278 (296)
....+.++|+|+..
T Consensus 79 ~~~~~~vp~lG~~~ 92 (138)
T PF04657_consen 79 LSNIILVPRLGAAL 92 (138)
T ss_pred HHHHHHhhhhhHHH
Confidence 67778889999877
No 82
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=90.02 E-value=0.053 Score=47.34 Aligned_cols=171 Identities=13% Similarity=0.075 Sum_probs=105.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 022504 13 PSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFGCSSQIF 92 (296)
Q Consensus 13 ~~l~l~~~~~~wg~~~i~~K~~~~~~~~p~~~~~~R~~~A~l~l~~~~~~~~r~~~~~~~~~~~~~~~~~g~~g~~~~~~ 92 (296)
.++..++=++.||+...++..- +-+|.+-.----+-|.++-+.+.++ + .|..+.+.+..-++-|++-.+.|..
T Consensus 3 ~~liaL~P~l~WGsip~v~~k~---GG~p~qQ~lGtT~GALifaiiv~~~--~--~p~~T~~~~iv~~isG~~Ws~GQ~~ 75 (288)
T COG4975 3 DLLIALLPALGWGSIPLVANKF---GGKPYQQTLGTTLGALIFAIIVFLF--V--SPELTLTIFIVGFISGAFWSFGQAN 75 (288)
T ss_pred hHHHHHHHHHHhcccceeeeec---CCChhHhhhhccHHHHHHHHHHhee--e--cCccchhhHHHHHHhhhHhhhhhhh
Confidence 4566777889999988875532 3466655444333444443333322 2 2345665555555555555778999
Q ss_pred HHHHhhccCchhhhhhc-chhhHHHHHHHHHHhhcccccccccccchhhhHHHhhhhhhhhhhccCCCCcCCCCCCCCCC
Q 022504 93 SFVGIQYSSPTLSTAML-NLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPR 171 (296)
Q Consensus 93 ~~~gl~~tsa~~asil~-~~~Pv~~~ils~~~~~E~~~~~~~~~~~~~iG~~l~~~G~~ll~~~~g~~~~~~~~~~~~~~ 171 (296)
++.+.++...++|--+. ..+=+-+-+++.+.++|--+..+. -...+++++.++|+.+-. .++++ + +
T Consensus 76 Qfka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~~--IlG~iAliliviG~~lTs-~~~~~-----n-----k 142 (288)
T COG4975 76 QFKAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQI--ILGFIALILIVIGIYLTS-KQDRN-----N-----K 142 (288)
T ss_pred hhhheeeeeeeccccccchhhHhhceeeeEEEEeccCcchhH--HHHHHHHHHHHHhheEee-eeccc-----c-----c
Confidence 99999999999988775 456677777888889887543321 112345666777775543 22211 0 1
Q ss_pred cccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHH
Q 022504 172 RLLLSPQLSWILGGFFLAAEAFMNSAWFILQALI 205 (296)
Q Consensus 172 ~~~~~~~~~~~~G~ll~l~aa~~~a~~~v~~k~~ 205 (296)
+ .++..+.-.|....+.+.+.|-.|.++.+..
T Consensus 143 ~--~~~~~n~kkgi~~L~iSt~GYv~yvvl~~~f 174 (288)
T COG4975 143 E--EENPSNLKKGIVILLISTLGYVGYVVLFQLF 174 (288)
T ss_pred c--ccChHhhhhheeeeeeeccceeeeEeeeccc
Confidence 1 1122234578888889999999999875443
No 83
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=88.75 E-value=8.3 Score=35.06 Aligned_cols=137 Identities=16% Similarity=0.072 Sum_probs=85.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhCC----CChHHHHHHHHHHHHHHHHHHHHHhhcCCC----C---CCCHHHHHH
Q 022504 10 AALPSVGMVIVLLAQVSNMEVIKAAMSKG----INKYVIIVYSDALSSLFFLFCSFLFHRSER----P---QLTFSILCS 78 (296)
Q Consensus 10 ~~~~~l~l~~~~~~wg~~~i~~K~~~~~~----~~p~~~~~~R~~~A~l~l~~~~~~~~r~~~----~---~~~~~~~~~ 78 (296)
+..|......+.++=|.-+.+++..++++ =+|++....=.-.-.+.++|..+.+++... + ..+..+..+
T Consensus 162 ~i~Gf~lv~~aS~~sGlRW~~tQ~ll~~~~~~~~~P~~ti~~l~p~M~~~Ll~~~l~fEG~~~~~~s~~f~~~d~~~~~r 241 (349)
T KOG1443|consen 162 NIEGFFLVLAASLLSGLRWAFTQMLLRNQPSAKRNPIDTIFHLQPWMSIGLLPLSLLFEGLHLITSSSIFRFQDTGLILR 241 (349)
T ss_pred eehhHHHHHHHHHhhhhhHHHHHHHHhcCccccCCCeeeHHHhhhHHHHHHHHHHHHHcccccchhhhHHHhcCccHHHH
Confidence 44577778888888899999999988742 247777666665566666676655543221 0 111111111
Q ss_pred -HHHHHHHH---HHHHHHHHHHhhccCchhhhhhcchhhHHHHHHHHHHhhcccccccccccchhhhHHHhhhhhhhh
Q 022504 79 -FFLLSVFG---CSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVV 152 (296)
Q Consensus 79 -~~~~g~~g---~~~~~~~~~gl~~tsa~~asil~~~~Pv~~~ils~~~~~E~~~~~~~~~~~~~iG~~l~~~G~~ll 152 (296)
...+++.| .+--...+.=+..|+.-+-++..---=+.+.+++..+++|+++.. .|.|..++..|+.+=
T Consensus 242 v~g~i~l~g~laF~l~~sEflLl~~Ts~ltlSIaGI~Kel~tl~la~ii~~d~ls~l------N~~Gl~i~~agi~~~ 313 (349)
T KOG1443|consen 242 VIGLISLGGLLAFLLEFSEFLLLSRTSSLTLSIAGIVKEVCTLLLAIIILKDQLSLL------NWLGLAICLAGILLH 313 (349)
T ss_pred HHHHHHHHHHHHHHHHHHHHheeeeccceeeeHHHHHHHHHHHHHHHHHhhcchhhh------HHHHHHHHHHHHHHh
Confidence 22233333 222223444455666555555555555778889999999999755 589999999999763
No 84
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=87.66 E-value=15 Score=32.60 Aligned_cols=134 Identities=11% Similarity=-0.007 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 022504 13 PSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFGCSSQIF 92 (296)
Q Consensus 13 ~~l~l~~~~~~wg~~~i~~K~~~~~~~~p~~~~~~R~~~A~l~l~~~~~~~~r~~~~~~~~~~~~~~~~~g~~g~~~~~~ 92 (296)
++++.+++.+.+|++++-.|.- + .-|++.+-++-.....++=+.+... +. .|+... +..+-|.+-+..+.+
T Consensus 1 G~~a~~va~~~fGs~~vPvK~~-~-~gDg~~fQw~~~~~i~~~g~~v~~~--~~-~p~f~p----~amlgG~lW~~gN~~ 71 (254)
T PF07857_consen 1 GYIACIVAVLFFGSNFVPVKKF-D-TGDGFFFQWVMCSGIFLVGLVVNLI--LG-FPPFYP----WAMLGGALWATGNIL 71 (254)
T ss_pred CchhHHHHHHHhcccceeeEec-c-CCCcHHHHHHHHHHHHHHHHHHHHh--cC-CCccee----HHHhhhhhhhcCcee
Confidence 4678899999999999999974 4 3577655554443333332222222 22 222221 112222323444555
Q ss_pred HHHHhhccCchhhhhhcch-hhHHHHHHHHH-HhhcccccccccccchhhhHHHhhhhhhhhhhcc
Q 022504 93 SFVGIQYSSPTLSTAMLNL-IPAFTFVLAII-FRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYK 156 (296)
Q Consensus 93 ~~~gl~~tsa~~asil~~~-~Pv~~~ils~~-~~~E~~~~~~~~~~~~~iG~~l~~~G~~ll~~~~ 156 (296)
..-.++...-+.+-.+-++ .-+.-...+.+ +++++.+.-. ......+|++++++|..+..+.+
T Consensus 72 ~vpii~~iGLglg~liW~s~n~l~Gw~~grfGlFg~~~~~~~-~~~Ln~~G~~l~~~~~~~f~fik 136 (254)
T PF07857_consen 72 VVPIIKTIGLGLGMLIWGSVNCLTGWASGRFGLFGLDPQVPS-SPWLNYIGVALVLVSGIIFSFIK 136 (254)
T ss_pred ehhHhhhhhhHHHHHHHHHHHHHHHHHHhhceeccccccccc-hhHHHHHHHHHHHHHHHheeeec
Confidence 5556666666666666554 33333334433 3444332221 12346899999999998876544
No 85
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=85.73 E-value=7.5 Score=34.98 Aligned_cols=136 Identities=15% Similarity=0.179 Sum_probs=90.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHH-HHHHHhCCCChHHHHHHHHHHHHHHHHHHH----HHhhc-C--CCCCCCHHHHHHH--
Q 022504 10 AALPSVGMVIVLLAQVSNMEV-IKAAMSKGINKYVIIVYSDALSSLFFLFCS----FLFHR-S--ERPQLTFSILCSF-- 79 (296)
Q Consensus 10 ~~~~~l~l~~~~~~wg~~~i~-~K~~~~~~~~p~~~~~~R~~~A~l~l~~~~----~~~~r-~--~~~~~~~~~~~~~-- 79 (296)
-..+.++.++++++-+.-++. -|.+..++++|...+.+...++..++-.+. ++... . ..|+-.+.|+...
T Consensus 174 iitGdllIiiaqiivaiQ~v~Eek~l~~~nV~pl~avg~eGlfG~v~~slL~i~m~yi~~~~sfS~~~~g~~eD~~~~~~ 253 (372)
T KOG3912|consen 174 IITGDLLIIIAQIIVAIQMVCEEKQLKKSNVAPLQAVGWEGLFGLVILSLLAIPMYYIPSGDSFSCNPRGVLEDWGDAFA 253 (372)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHhhhhhccCCHHHHhhhhhhHHHHHHHHHHHHHhheecCCcCcCCCCcchhhHHHHHH
Confidence 356889999999999999988 455555689999999999988855544332 22111 1 1133334444322
Q ss_pred -------HHHHHHH-HHHHH-HHHHHhh---ccCchhhhhhcchhhHHHHHHHHHHhhcccccccccccchhhhHHHhhh
Q 022504 80 -------FLLSVFG-CSSQI-FSFVGIQ---YSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIG 147 (296)
Q Consensus 80 -------~~~g~~g-~~~~~-~~~~gl~---~tsa~~asil~~~~Pv~~~ils~~~~~E~~~~~~~~~~~~~iG~~l~~~ 147 (296)
+.+.+.+ ..... +.+.|+. +.|+++=.++-.+-..++++++..+..|+++.- ++.|.++.+.
T Consensus 254 ~~~e~p~l~val~~~~vSiAffNfaGlsitk~~SattRmllD~lRt~~IWv~si~m~~E~f~ll------qilGFliLi~ 327 (372)
T KOG3912|consen 254 ALQESPSLAVALIGFTVSIAFFNFAGLSITKELSATTRMLLDSLRTYVIWVFSIAMGWEYFHLL------QILGFLILIM 327 (372)
T ss_pred HhcCCchhHHHHhhhhhheeeeeehhhHHHHHhhHHHHHHHHhhhhhhhhHhHHHHHHHHHHHH------HHHHHHHHHH
Confidence 2233333 22222 2344443 447777777878888888999999999998766 5899999999
Q ss_pred hhhh
Q 022504 148 GAFV 151 (296)
Q Consensus 148 G~~l 151 (296)
|+++
T Consensus 328 Gi~l 331 (372)
T KOG3912|consen 328 GIIL 331 (372)
T ss_pred HHHH
Confidence 9875
No 86
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=84.56 E-value=4.9 Score=34.92 Aligned_cols=117 Identities=15% Similarity=0.195 Sum_probs=81.5
Q ss_pred HHHHHHh-CCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCC----CCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCchh
Q 022504 30 VIKAAMS-KGINKYVIIVYSDALSSLFFLFCSFLFHRSERP----QLTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTL 104 (296)
Q Consensus 30 ~~K~~~~-~~~~p~~~~~~R~~~A~l~l~~~~~~~~r~~~~----~~~~~~~~~~~~~g~~g~~~~~~~~~gl~~tsa~~ 104 (296)
..|.-.+ .+..-++-.+|..+++.++++.+.+.++..... ..+...+...++-|+...+...+.-+.++-+++++
T Consensus 173 ~mrkri~ltNf~d~dtmfYnNllslPiL~~~s~~~edws~~n~annl~~d~l~am~ISgl~svgiSy~saWcvrVtSSTt 252 (309)
T COG5070 173 IMRKRIKLTNFKDFDTMFYNNLLSLPILLSFSFLFEDWSPGNLANNLSVDSLMAMFISGLCSVGISYCSAWCVRVTSSTT 252 (309)
T ss_pred HHHHhhcccccchhhHHHHhhhHHHHHHHHHHHHhccCCcchhhcCCChHHHHHHHHHHHHHhhhhhccceeEeehhhhH
Confidence 3454433 346778999999999999999888765432211 11222233555556655566667777888899999
Q ss_pred hhhhcchhhHHHHHHHHHHhhcccccccccccchhhhHHHhhhhhhhh
Q 022504 105 STAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVV 152 (296)
Q Consensus 105 asil~~~~Pv~~~ils~~~~~E~~~~~~~~~~~~~iG~~l~~~G~~ll 152 (296)
-+.+..+.-.-..+.+.++++|+.++. ++..+.+++...++-
T Consensus 253 ySMvGALNKlp~alaGlvffdap~nf~------si~sillGflsg~iY 294 (309)
T COG5070 253 YSMVGALNKLPIALAGLVFFDAPVNFL------SIFSILLGFLSGAIY 294 (309)
T ss_pred HHHHHHhhhChHHHhhhhhcCCchhHH------HHHHHHHHHHHHHHH
Confidence 998888888888888888999997655 578888887665443
No 87
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=83.78 E-value=9.6 Score=32.65 Aligned_cols=30 Identities=10% Similarity=-0.068 Sum_probs=23.7
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 022504 180 SWILGGFFLAAEAFMNSAWFILQALILRKF 209 (296)
Q Consensus 180 ~~~~G~ll~l~aa~~~a~~~v~~k~~~~~~ 209 (296)
+...|....+.+..+-++..+.+++..|+.
T Consensus 82 ~~~~g~~~~l~a~~~~~~~~~y~e~~~k~~ 111 (222)
T TIGR00803 82 NPVVGLSAVLSALLSSGFAGVYFEKILKDG 111 (222)
T ss_pred cHHHHHHHHHHHHHHHhhhHHHHHHcccCC
Confidence 346788888888888888899988886664
No 88
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=81.58 E-value=12 Score=33.68 Aligned_cols=183 Identities=13% Similarity=0.135 Sum_probs=103.0
Q ss_pred HHHHHHHHHHhCCCCh-HHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCch-
Q 022504 26 SNMEVIKAAMSKGINK-YVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPT- 103 (296)
Q Consensus 26 ~~~i~~K~~~~~~~~p-~~~~~~R~~~A~l~l~~~~~~~~r~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~gl~~tsa~- 103 (296)
++-++.....+++=+. -.+.+..|++-+.-=+++.-.+.+ .+++.+.|++..... .+ ...+.+..+++++-=+-
T Consensus 17 snvv~lE~L~~~~pgsgNLITFaqFlFia~eGlif~skf~~-~k~kiplk~Y~i~V~--mF-F~vnv~NN~al~f~I~~P 92 (330)
T KOG1583|consen 17 SNVVFLELLVRNEPGSGNLITFAQFLFIATEGLIFTSKFFT-VKPKIPLKDYAITVA--MF-FIVNVTNNYALKFNIPMP 92 (330)
T ss_pred chHHHHHHHHHhCCCCeeehHHHHHHHHHHhceeeeccccc-cCCCCchhhhheehh--ee-eeeeeeccceeeecccce
Confidence 4556666655432122 234555555444332222111111 125566676443222 11 23345556666665322
Q ss_pred hhhhhcchhhHHHHHHHHHHhhcccccccccccchhhhHHHhhhhhhhhhhccCCCCcCCCCCCCCCCcccCCCCCchhH
Q 022504 104 LSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWIL 183 (296)
Q Consensus 104 ~asil~~~~Pv~~~ils~~~~~E~~~~~~~~~~~~~iG~~l~~~G~~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (296)
.=-++=+-.++-++++++++.++|-+.+ |...++..-+|+++-++.++++... .+++....+......-+..
T Consensus 93 lHiIfRsgsll~nM~~g~il~~k~Ys~~------Qy~Sv~~iTiGiiIcTl~s~~d~~~--~~~~l~~~~~~~~~~~w~i 164 (330)
T KOG1583|consen 93 LHIIFRSGSLLANMILGWILLGKRYSLR------QYSSVLMITIGIIICTLFSSKDGRS--KLSGLDSGSAQSDFFWWLI 164 (330)
T ss_pred EEEEEecCcHHHHHHHHHHhccceeehh------hhhhHHhhhhhheeEEeecCcchhh--hhcccccCcccccchHHHH
Confidence 2223345678889999999988876554 6899999999998887665544322 0111111111122234578
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcc-hhHHHHHHHH
Q 022504 184 GGFFLAAEAFMNSAWFILQALILRKFA-AVLIIMFYLF 220 (296)
Q Consensus 184 G~ll~l~aa~~~a~~~v~~k~~~~~~~-~~~~~~~~~~ 220 (296)
|..+...+-+.-|...+.|+..-||++ ++-...++.=
T Consensus 165 Gi~lL~~al~~sa~mgiyqE~~Y~kyGKh~~EalFytH 202 (330)
T KOG1583|consen 165 GIALLVFALLLSAYMGIYQETTYQKYGKHWKEALFYTH 202 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHH
Confidence 999999999999999999999888874 2334445543
No 89
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=79.76 E-value=1.7 Score=38.14 Aligned_cols=133 Identities=14% Similarity=0.131 Sum_probs=74.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 022504 12 LPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFGCSSQI 91 (296)
Q Consensus 12 ~~~l~l~~~~~~wg~~~i~~K~~~~~~~~p~~~~~~R~~~A~l~l~~~~~~~~r~~~~~~~~~~~~~~~~~g~~g~~~~~ 91 (296)
|+...++.+.+-+-..-+..+.-.-++.|.+.--+.-+.++++++-. + ++.++.++..++. .+-|+.-...+.
T Consensus 152 kgi~~L~iSt~GYv~yvvl~~~f~v~g~saiLPqAiGMv~~ali~~~----~--~~~~~~~K~t~~n-ii~G~~Wa~GNl 224 (288)
T COG4975 152 KGIVILLISTLGYVGYVVLFQLFDVDGLSAILPQAIGMVIGALILGF----F--KMEKRFNKYTWLN-IIPGLIWAIGNL 224 (288)
T ss_pred hheeeeeeeccceeeeEeeeccccccchhhhhHHHHHHHHHHHHHhh----c--ccccchHHHHHHH-HhhHHHHHhhHH
Confidence 45555554544443333333322113455555555666666665432 1 2122233343333 445666656677
Q ss_pred HHHHHhhccCchhhhhhcchhhHHHHHHHHHHhhcccccccccccchhhhHHHhhhhhhhhh
Q 022504 92 FSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVT 153 (296)
Q Consensus 92 ~~~~gl~~tsa~~asil~~~~Pv~~~ils~~~~~E~~~~~~~~~~~~~iG~~l~~~G~~ll~ 153 (296)
+++++-+....+++=.+..+..+...+-+.+++|||-+.|++ ..-++|+++-++|++++.
T Consensus 225 ~ml~a~~~~GvAt~FSlSQlgViisTiGGIl~L~ekKtkkEm--~~v~iGiilivvgai~lg 284 (288)
T COG4975 225 FMLLAAQKVGVATSFSLSQLGVIISTIGGILFLGEKKTKKEM--VYVIIGIILIVVGAILLG 284 (288)
T ss_pred HHHHhhhhhceeeeeeHhhheeeeeecceEEEEeccCchhhh--hhhhhhHHHHHHHhhhhh
Confidence 777777755555444555566666666778899999877753 345678888888887654
No 90
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=73.07 E-value=31 Score=28.06 Aligned_cols=56 Identities=16% Similarity=0.151 Sum_probs=47.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHhcC
Q 022504 182 ILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSE 237 (296)
Q Consensus 182 ~~G~ll~l~aa~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~ 237 (296)
.+..+..+.+..+-+...-+..++.+..++|..-+.+.+.+|.+.+..+..+.++.
T Consensus 4 ~l~ll~~i~aG~~l~~Q~~iN~qL~~~~~spl~As~isf~vGt~~L~~l~l~~~~~ 59 (150)
T COG3238 4 YLYLLFAILAGALLPLQAAINGRLARYLGSPLLASLISFLVGTVLLLILLLIKQGH 59 (150)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 35677888899999999999999988887788899999999999998888775543
No 91
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=72.18 E-value=68 Score=28.15 Aligned_cols=122 Identities=10% Similarity=0.037 Sum_probs=76.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHH-hhcCCCCCC-CHHHHHHHHHHHHHH-
Q 022504 10 AALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFL-FHRSERPQL-TFSILCSFFLLSVFG- 86 (296)
Q Consensus 10 ~~~~~l~l~~~~~~wg~~~i~~K~~~~~~~~p~~~~~~R~~~A~l~l~~~~~~-~~r~~~~~~-~~~~~~~~~~~g~~g- 86 (296)
...+.++.+.++++=|...+.....+.++-.|++..-.+.-+-++++..+... .+++...+. -.+.+-...+.-++.
T Consensus 112 ~~~G~~~vl~~~~~S~~agVy~E~~lK~~~~s~~~~N~qL~~~gi~~~~~~~~~~~~~~~~~~g~f~G~~~~~~~~i~~~ 191 (244)
T PF04142_consen 112 PLLGLLAVLAAAFLSGFAGVYFEKLLKRSNVSLWIQNMQLYLFGILFNLLALLLSDGSAISESGFFHGYSWWVWIVIFLQ 191 (244)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHhcccccccccCCchhhcchHHHHHHHHH
Confidence 45688888889999999999998877754567777777766665555544432 222211111 111111112222222
Q ss_pred HHHHHHHHHHhhccCchhhhhhcchhhHHHHHHHHHHhhcccccc
Q 022504 87 CSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWE 131 (296)
Q Consensus 87 ~~~~~~~~~gl~~tsa~~asil~~~~Pv~~~ils~~~~~E~~~~~ 131 (296)
...-+..-.-+||.+.-.=+.-....-+++.+++..+++++++..
T Consensus 192 a~gGllva~v~KyadnI~K~fa~a~siv~t~~~s~~lf~~~~s~~ 236 (244)
T PF04142_consen 192 AIGGLLVAFVLKYADNIVKGFATAVSIVLTAVLSVLLFGFPPSLS 236 (244)
T ss_pred HHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCchH
Confidence 333344555688888877777777888899999999999887654
No 92
>COG1968 BacA Undecaprenyl pyrophosphate phosphatase [Lipid transport and metabolism]
Probab=70.73 E-value=79 Score=28.31 Aligned_cols=115 Identities=10% Similarity=0.083 Sum_probs=61.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHH
Q 022504 11 ALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFGCSSQ 90 (296)
Q Consensus 11 ~~~~l~l~~~~~~wg~~~i~~K~~~~~~~~p~~~~~~R~~~A~l~l~~~~~~~~r~~~~~~~~~~~~~~~~~g~~g~~~~ 90 (296)
++-.+..+++.+-=+.-+...|...+..+-....+..-..+.+++++..-...+|.+.++.+.-.++..+.+|+.+++..
T Consensus 84 ~~l~l~ilvatiPa~v~Gl~~~d~i~~~l~~~~~va~~lIv~gi~li~~e~~~~~~~~~~~~~l~~~da~~IGlaQ~lAl 163 (270)
T COG1968 84 FRLWLKILVATIPAVVLGLLFKDFIKSHLFNPRVVAIALIVGGILLILAEKLNKKPRLRDLDDLTLRDALIIGLAQCLAL 163 (270)
T ss_pred HHHHHHHHHHHHhHHHhhHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHHhccccCcCChhhCCHHHHHHHHHHHHHHH
Confidence 34556677777777777777776555444445556666666666655433222210111122222445777888774442
Q ss_pred ------------HHHHHHhhccCchhhhhhcchhhHHHHHHHHHHhhc
Q 022504 91 ------------IFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLE 126 (296)
Q Consensus 91 ------------~~~~~gl~~tsa~~asil~~~~Pv~~~ils~~~~~E 126 (296)
...+.|++...|++-|.+.. .|.+.-.-..-++|+
T Consensus 164 ~PG~SRSGaTI~~~lllG~~r~~AaefSFlLa-IP~m~GA~~l~l~k~ 210 (270)
T COG1968 164 IPGTSRSGATISGGLLLGLSREAAAEFSFLLA-IPAMFGASALDLFKS 210 (270)
T ss_pred cCCCCccHHHHHHHHHcCCCHHHHHHHHHHHH-HHHHHHHHHHHHHhh
Confidence 34555666666666655543 565544444444555
No 93
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=70.09 E-value=6 Score=31.24 Aligned_cols=74 Identities=12% Similarity=-0.046 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHhcCCCcceeccchhHHHHHHHHHhhhHHH
Q 022504 184 GGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVAVLYSLLALGFEL 263 (296)
Q Consensus 184 G~ll~l~aa~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~lly~gv~~t~~a 263 (296)
|.++.+.+.++-+..-++-|+-.++.++ ...... . .. ..... .+ -...+|+|+++.+++
T Consensus 3 ~~~~i~~sv~l~~~gQl~~K~g~~~~g~-~~~~~~-~----~~-~~~~~---~~-----------p~~~i~lgl~~~~la 61 (129)
T PRK02971 3 GYLWGLASVLLASVAQLSLKWGMSRLPL-LSHAWD-F----IA-ALLAF---GL-----------ALRAVLLGLAGYALS 61 (129)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhhCCC-ccchhH-H----HH-HHHHH---hc-----------cHHHHHHHHHHHHHH
Confidence 5667778888878878888888777642 221111 0 00 00000 00 123678899999999
Q ss_pred HHHHHHHHhcCCcee
Q 022504 264 ACAHGACRELDLFMY 278 (296)
Q Consensus 264 y~l~~~~l~~~g~~~ 278 (296)
|.+|.+++|+.+.+.
T Consensus 62 ~~~w~~aL~~~~ls~ 76 (129)
T PRK02971 62 MLCWLKALRYLPLSR 76 (129)
T ss_pred HHHHHHHHHhCCcHH
Confidence 999999999988776
No 94
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=65.45 E-value=18 Score=32.44 Aligned_cols=111 Identities=14% Similarity=0.184 Sum_probs=77.8
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHhhc--CCC---CCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCchhhhhhcchh
Q 022504 38 GINKYVIIVYSDALSSLFFLFCSFLFHR--SER---PQLTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLI 112 (296)
Q Consensus 38 ~~~p~~~~~~R~~~A~l~l~~~~~~~~r--~~~---~~~~~~~~~~~~~~g~~g~~~~~~~~~gl~~tsa~~asil~~~~ 112 (296)
.-+.-+++++...++.++++........ +.+ ...+.|.+...++.++.|.+.+.+...=++.-.+..|+.+...-
T Consensus 217 ~~ss~EmvfySy~iG~vflf~~mvlTge~f~a~~fcaehp~~tyGy~~~~s~~gylG~~~VLalI~~fGA~~aatvTTaR 296 (367)
T KOG1582|consen 217 PASSSEMVFYSYGIGFVFLFAPMVLTGELFSAWTFCAEHPVRTYGYAFLFSLAGYLGIVFVLALIKLFGALIAATVTTAR 296 (367)
T ss_pred CCCcceEEEeeecccHHHHHHHHHhcccchhhhHHHHhCcHhHHHHHHHHHHHhHhhHHHHHHHHHHhchhHHHHHHHhH
Confidence 3456778888888888887765443211 011 12456677788888887755566655556667888888888888
Q ss_pred hHHHHHHHHHHhhcccccccccccchhhhHHHhhhhhhhhhh
Q 022504 113 PAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTF 154 (296)
Q Consensus 113 Pv~~~ils~~~~~E~~~~~~~~~~~~~iG~~l~~~G~~ll~~ 154 (296)
-..|.++|++++.++++.+. .-|..+.+.|+++=..
T Consensus 297 KavTi~lSfllFsKPfT~qy------~~~gllv~lgI~Ln~y 332 (367)
T KOG1582|consen 297 KAVTILLSFLLFSKPFTEQY------VWSGLLVVLGIYLNMY 332 (367)
T ss_pred hHHHHHHHHHHHcCchHHHH------hhhhHHHHHHHHhhcc
Confidence 89999999999998887653 4577778888876543
No 95
>KOG4831 consensus Unnamed protein [Function unknown]
Probab=60.77 E-value=73 Score=24.32 Aligned_cols=111 Identities=19% Similarity=0.213 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCChH------HHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHH
Q 022504 15 VGMVIVLLAQVSNMEVIKAAMSKGINKY------VIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFGCS 88 (296)
Q Consensus 15 l~l~~~~~~wg~~~i~~K~~~~~~~~p~------~~~~~R~~~A~l~l~~~~~~~~r~~~~~~~~~~~~~~~~~g~~g~~ 88 (296)
..++.+.++||...++.|..-+ +++.. ...+.|...-. ..+++.+..++ ++-+
T Consensus 6 ~~lvaVgllWG~Tnplirrgs~-g~~~v~~~~~k~~~~lqe~~tl----------------~l~w~Y~iPFl----lNqc 64 (125)
T KOG4831|consen 6 DKLVAVGLLWGATNPLIRRGSL-GWDKVKSSSRKIMIALQEMKTL----------------FLNWEYLIPFL----LNQC 64 (125)
T ss_pred HHHHHHHHHHccccHHHHHHHh-hHhhccCchHHHHHHHHHHHHH----------------HHhHHHHHHHH----HHHh
Confidence 4578889999999999998754 34332 22222222110 12333322222 2433
Q ss_pred HHHHHHHHhhccCchhhhhhcc-hhhHHHHHHHHHHhhcccccccccccchhhhHHHhhhhhhhh
Q 022504 89 SQIFSFVGIQYSSPTLSTAMLN-LIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVV 152 (296)
Q Consensus 89 ~~~~~~~gl~~tsa~~asil~~-~~Pv~~~ils~~~~~E~~~~~~~~~~~~~iG~~l~~~G~~ll 152 (296)
....|+.-++.++-+.|.-+.+ +.-.++.+.+.. ++|+..-+ +.++|..+...|+.+.
T Consensus 65 gSaly~~tLa~a~islavpv~nsltfafta~~G~~-LGE~~~g~-----~a~lGt~liv~Gi~Lc 123 (125)
T KOG4831|consen 65 GSALYYLTLASAPISLAVPVTNSLTFAFTAIFGKA-LGEETQGG-----LALLGTSLIVFGIWLC 123 (125)
T ss_pred hHHHHHHHHhcCCceeeeeecchhHHHHHHHHHHH-hccccccc-----eeehhhhHHhhhhhhe
Confidence 4577888899999888887754 566788888864 57777544 3578888888887654
No 96
>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function.
Probab=57.79 E-value=72 Score=24.28 Aligned_cols=63 Identities=16% Similarity=0.289 Sum_probs=34.7
Q ss_pred HHHHH-HHHHHHHHHHhhccCchhhhhhcchhh-HHHHHHHHHHhhcccccccccccchhhhHHHhhhhhh
Q 022504 82 LSVFG-CSSQIFSFVGIQYSSPTLSTAMLNLIP-AFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAF 150 (296)
Q Consensus 82 ~g~~g-~~~~~~~~~gl~~tsa~~asil~~~~P-v~~~ils~~~~~E~~~~~~~~~~~~~iG~~l~~~G~~ 150 (296)
++++- ++.....=.|.+.-|++.--++|=..- ..-..++.++++|+++++. ..|-.+.+.++.
T Consensus 40 IAffEY~l~VPANRiG~~~~s~~QLKi~QEvitL~vF~~Fsv~~l~E~l~~n~------l~af~~i~~av~ 104 (108)
T PF04342_consen 40 IAFFEYCLQVPANRIGYQTFSLAQLKIIQEVITLVVFAPFSVFYLGEPLKWNY------LWAFLCILGAVY 104 (108)
T ss_pred HHHHHHHHhCcchhhhccccCHHHHHHHHHHHhhheeHHHHHHHhCCCccHHH------HHHHHHHHHhhh
Confidence 34444 333333445555556666666653222 2223467788999998874 566655554443
No 97
>PF02419 PsbL: PsbL protein; InterPro: IPR003372 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbL found in PSII. PsbL is located in a gene cluster with PsbE, PsbF and PsbJ (PsbEFJL). Both PsbL and PsbJ (IPR002682 from INTERPRO) are essential for proper assembly of the OEC. Mutations in PsbL prevent the formation of both PSII core dimers and PSII-light harvesting complex []. In addition, both PsbL and PsbJ are involved in the unidirectional flow of electrons, where PsbJ regulates the forward electron flow from D2 (Qa) to the plastoquinone pool, and PsbL prevents the reduction of PSII by back electron flow from plastoquinol protecting PSII from photo-inactivation [].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane; PDB: 3A0H_L 3A0B_l 3ARC_l 1S5L_l 2AXT_l 3BZ2_L 4FBY_L 3PRQ_L 3PRR_L 3KZI_L ....
Probab=54.99 E-value=24 Score=21.25 Aligned_cols=27 Identities=7% Similarity=0.027 Sum_probs=20.0
Q ss_pred CCccccchhhhHHHHHHHHHHHHHHHH
Q 022504 2 GVDMGSMRAALPSVGMVIVLLAQVSNM 28 (296)
Q Consensus 2 ~~~~~~~~~~~~~l~l~~~~~~wg~~~ 28 (296)
+||.++.+-+.+.+..+..++++++.+
T Consensus 9 ~VELNRTSLY~GLllifvl~vLFssyf 35 (37)
T PF02419_consen 9 PVELNRTSLYWGLLLIFVLAVLFSSYF 35 (37)
T ss_dssp -BE--CCHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhHHhHHHHHHHHHHHHHHhhhhh
Confidence 578888888889888888888887765
No 98
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=54.30 E-value=24 Score=26.69 Aligned_cols=43 Identities=14% Similarity=-0.018 Sum_probs=27.7
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHhcCCceeeecc---cccHH-HHHHhh
Q 022504 249 LVAVLYSLLALGFELACAHGACRELDLFMYQCSS---PWPLS-SLLSWM 293 (296)
Q Consensus 249 ~~~lly~gv~~t~~ay~l~~~~l~~~g~~~~~s~---~~p~~-~l~~~~ 293 (296)
+...+..|++....++.+|.+++++.++ . ++. .+|+- ++++|.
T Consensus 34 ~~~~~~~g~~~~~~~~~~~~~a~~~~~~-~-v~~i~~~~pi~~~ll~~~ 80 (113)
T PF13536_consen 34 WLWLILAGLLGFGVAYLLFFYALSYAPA-L-VAAIFSLSPIFTALLSWL 80 (113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCcH-H-HHHHHHHHHHHHHHHHHH
Confidence 3344455666666889999999999774 3 323 34654 567765
No 99
>CHL00038 psbL photosystem II protein L
Probab=52.86 E-value=22 Score=21.40 Aligned_cols=27 Identities=4% Similarity=0.036 Sum_probs=21.6
Q ss_pred CCccccchhhhHHHHHHHHHHHHHHHH
Q 022504 2 GVDMGSMRAALPSVGMVIVLLAQVSNM 28 (296)
Q Consensus 2 ~~~~~~~~~~~~~l~l~~~~~~wg~~~ 28 (296)
.||.+|.+-+.+.+..+..+++++..+
T Consensus 10 ~VELNRTSLy~GLLlifvl~vlfssyf 36 (38)
T CHL00038 10 NVELNRTSLYWGLLLIFVLAVLFSNYF 36 (38)
T ss_pred ccchhhhhHHHHHHHHHHHHHHHHHHh
Confidence 477888888888888888888887654
No 100
>PRK00753 psbL photosystem II reaction center L; Provisional
Probab=51.60 E-value=21 Score=21.59 Aligned_cols=27 Identities=11% Similarity=0.047 Sum_probs=21.6
Q ss_pred CCccccchhhhHHHHHHHHHHHHHHHH
Q 022504 2 GVDMGSMRAALPSVGMVIVLLAQVSNM 28 (296)
Q Consensus 2 ~~~~~~~~~~~~~l~l~~~~~~wg~~~ 28 (296)
.||.+|.+-+.+.+..+..++++++.+
T Consensus 11 ~VELNRTSLy~GlLlifvl~vLFssYf 37 (39)
T PRK00753 11 PVELNRTSLYLGLLLVFVLGILFSSYF 37 (39)
T ss_pred CceechhhHHHHHHHHHHHHHHHHhhc
Confidence 477888888888888888888887654
No 101
>COG4657 RnfA Predicted NADH:ubiquinone oxidoreductase, subunit RnfA [Energy production and conversion]
Probab=46.76 E-value=67 Score=26.48 Aligned_cols=29 Identities=17% Similarity=0.132 Sum_probs=21.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 022504 181 WILGGFFLAAEAFMNSAWFILQALILRKF 209 (296)
Q Consensus 181 ~~~G~ll~l~aa~~~a~~~v~~k~~~~~~ 209 (296)
........+.+++.|++..++.....+|.
T Consensus 130 f~qsv~~gf~a~lGfslvmvlfA~iRER~ 158 (193)
T COG4657 130 FLQSVVYGFGAALGFSLVMVLFAAIRERL 158 (193)
T ss_pred HHHHHHHHhhhHhhHHHHHHHHHHHHHHH
Confidence 44566777888888888888877666654
No 102
>PRK15462 dipeptide/tripeptide permease D; Provisional
Probab=43.99 E-value=1.9e+02 Score=28.27 Aligned_cols=18 Identities=0% Similarity=0.085 Sum_probs=14.7
Q ss_pred hhhhcchhhHHHHHHHHH
Q 022504 105 STAMLNLIPAFTFVLAII 122 (296)
Q Consensus 105 asil~~~~Pv~~~ils~~ 122 (296)
++-+|+.+|+++++++=+
T Consensus 310 ~~~~qslNp~~ii~l~P~ 327 (493)
T PRK15462 310 TAMFQSINAFAVMLCGVF 327 (493)
T ss_pred HHHHHhHhHHHHHHHHHH
Confidence 778899999999977743
No 103
>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family. This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane
Probab=40.38 E-value=3.1e+02 Score=25.53 Aligned_cols=183 Identities=14% Similarity=0.062 Sum_probs=0.0
Q ss_pred ccchhhhHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcCCC-----CCCCHHHHHHHH
Q 022504 6 GSMRAALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSER-----PQLTFSILCSFF 80 (296)
Q Consensus 6 ~~~~~~~~~l~l~~~~~~wg~~~i~~K~~~~~~~~p~~~~~~R~~~A~l~l~~~~~~~~r~~~-----~~~~~~~~~~~~ 80 (296)
+..+-..+.+.-.+..++-|+.++-.|..-+.....++++ ..+-+.++.|.....-.-.. ...+...+....
T Consensus 1 m~~~ii~Gii~h~iGg~~~~sfy~P~kkvk~WsWEs~Wlv---~gi~swli~P~~~a~l~ip~~~~i~~~~~~~~l~~~~ 77 (344)
T PF06379_consen 1 MNSAIILGIIFHAIGGFASGSFYVPFKKVKGWSWESYWLV---QGIFSWLIVPWLWALLAIPDFFSIYSATPASTLFWTF 77 (344)
T ss_pred CCchHHHHHHHHHHHHHHhhhhccchhhcCCccHHHHHHH---HHHHHHHHHHHHHHHHhCCcHHHHHHhCChhHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHhhccCchhhhhh-cchhhHHHHHHHHHHhhc-ccccccccccchhhhHHHhhhhhhhhhhccCC
Q 022504 81 LLSVFGCSSQIFSFVGIQYSSPTLSTAM-LNLIPAFTFVLAIIFRLE-KLNWENKSSQAKSLGTFASIGGAFVVTFYKGP 158 (296)
Q Consensus 81 ~~g~~g~~~~~~~~~gl~~tsa~~asil-~~~~Pv~~~ils~~~~~E-~~~~~~~~~~~~~iG~~l~~~G~~ll~~~~g~ 158 (296)
+.|++-......+=.+++|...+...-+ ..++-++-.++--++.++ ..-..+.-++.-.+|++++++|+.+.......
T Consensus 78 l~G~lWGIGgltfGl~mryLGvSLG~sI~lGl~~~~GTlippi~~g~~~~l~~~~~g~~vL~Gv~v~LiGIai~g~AG~~ 157 (344)
T PF06379_consen 78 LFGVLWGIGGLTFGLAMRYLGVSLGQSIALGLCAVFGTLIPPIFQGTFDELLATPSGQIVLLGVAVCLIGIAICGKAGSM 157 (344)
T ss_pred HHHHHHhcchhhHhHHHHHHhHHHHHHHHHHHHHHHhhchHHHHcCcccccccCCCchhhhhHHHHHHHHHHHHhHHHHh
Q ss_pred CCcCCCCCCCCCCcccCCCCCchhHHHHHHHHHHHHHHHHHH
Q 022504 159 PLIGELSHSGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFI 200 (296)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~G~ll~l~aa~~~a~~~v 200 (296)
.-...+. ...+.+.-+|.+.++.+.+.-|.+++
T Consensus 158 Ke~~~~~---------~~~efn~~kGl~iAv~sGv~Sa~fn~ 190 (344)
T PF06379_consen 158 KEKELGE---------EAKEFNFKKGLIIAVLSGVMSACFNF 190 (344)
T ss_pred hhhhhcc---------chhhhhhhhhHHHHHHHHHHHHHHHH
No 104
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=38.26 E-value=96 Score=27.55 Aligned_cols=54 Identities=11% Similarity=0.057 Sum_probs=39.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHhCC-------CChHHHHHHHH----HHHHHHHHHHHHH
Q 022504 9 RAALPSVGMVIVLLAQVSNMEVIKAAMSKG-------INKYVIIVYSD----ALSSLFFLFCSFL 62 (296)
Q Consensus 9 ~~~~~~l~l~~~~~~wg~~~i~~K~~~~~~-------~~p~~~~~~R~----~~A~l~l~~~~~~ 62 (296)
+|..+..+.+++.++.|++++-.++..|++ -+++..++-.+ +.+++.++.++..
T Consensus 180 ~RivG~~LAv~aGvlyGs~fvPv~Yi~~~~~~y~~as~~~ldYvFs~f~GIfltSt~~F~~Y~~~ 244 (254)
T PF07857_consen 180 KRIVGIILAVFAGVLYGSNFVPVIYIQDHPDIYPGASQNGLDYVFSHFSGIFLTSTVYFVIYCII 244 (254)
T ss_pred chhHhHHHHHHHHHHHhcccchHHHHHhCccccCCCCCcchheeHHHHhhHHHHHHHHHHHHHHh
Confidence 466789999999999999999999997763 24555555544 4555555556555
No 105
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=34.93 E-value=2.7e+02 Score=25.25 Aligned_cols=134 Identities=20% Similarity=0.202 Sum_probs=88.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHHHHHHHHH--H-----hhcCCC---CCCCHHHHHHHH
Q 022504 12 LPSVGMVIVLLAQVSNMEVIKAAMS-KGINKYVIIVYSDALSSLFFLFCSF--L-----FHRSER---PQLTFSILCSFF 80 (296)
Q Consensus 12 ~~~l~l~~~~~~wg~~~i~~K~~~~-~~~~p~~~~~~R~~~A~l~l~~~~~--~-----~~r~~~---~~~~~~~~~~~~ 80 (296)
.|+..+.++.+.=+.+.+.-...++ +|=++-+..++-=.+..+.++...- . ..+.++ |....+ ....
T Consensus 164 iGi~lL~~al~~sa~mgiyqE~~Y~kyGKh~~EalFytH~LsLP~Flf~~~div~~~~~~~~se~~~~p~~g~~--vP~~ 241 (330)
T KOG1583|consen 164 IGIALLVFALLLSAYMGIYQETTYQKYGKHWKEALFYTHFLSLPLFLFMGDDIVSHWRLAFKSESYLIPLLGFK--VPSM 241 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHhccchHHHhcchHHHHHHHHhcCcceeccccCcc--ccHH
Confidence 3666777777777777887777776 4678999999999988887665421 0 001110 111111 1122
Q ss_pred HHHHHH-HHHHHHHHHHhhcc----CchhhhhhcchhhHHHHHHHHHHhhcccccccccccchhhhHHHhhhhhhhhh
Q 022504 81 LLSVFG-CSSQIFSFVGIQYS----SPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVT 153 (296)
Q Consensus 81 ~~g~~g-~~~~~~~~~gl~~t----sa~~asil~~~~Pv~~~ils~~~~~E~~~~~~~~~~~~~iG~~l~~~G~~ll~ 153 (296)
+.=++. ++.|.++.-|+... ++-+.++...+--.+-.++|.+.++.++++. .|+|..+-+.|.++-.
T Consensus 242 ~~yLl~n~L~Qy~CikgVy~L~te~~sLTVTlvltlRKFvSLl~SiiyF~Npft~~------h~lGa~lVF~Gt~~fa 313 (330)
T KOG1583|consen 242 WVYLLFNVLTQYFCIKGVYILTTETSSLTVTLVLTLRKFVSLLFSIIYFENPFTPW------HWLGAALVFFGTLLFA 313 (330)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhceecceEEEEeeeHHHHHHHhheeeEecCCCCHH------HHHHHHHHHHHHHHHH
Confidence 222334 66777777776533 4556667777888888999999999998765 5899999999998765
No 106
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=33.37 E-value=1.1e+02 Score=27.77 Aligned_cols=68 Identities=13% Similarity=0.081 Sum_probs=43.7
Q ss_pred HHHHH-HHHHHhhccCchhhhhhcc-hhhHHHHHHHHHHhhcccccccccccchhhhHHHhhhhhhhhhh
Q 022504 87 CSSQI-FSFVGIQYSSPTLSTAMLN-LIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTF 154 (296)
Q Consensus 87 ~~~~~-~~~~gl~~tsa~~asil~~-~~Pv~~~ils~~~~~E~~~~~~~~~~~~~iG~~l~~~G~~ll~~ 154 (296)
...|. +...|+++-+++...-+.+ ..-....+-+.++++|--+...+.-.....|..+.+.|+.++..
T Consensus 223 ~~~Q~~~LN~aL~~fd~~~V~P~~~v~~t~~~i~~g~i~f~e~~~~~~~~~~~~~~G~~~ii~GV~lL~~ 292 (300)
T PF05653_consen 223 AVLQLYYLNKALKRFDTSLVVPVYYVFFTLSSIIGGAIFFQEFSRMTAWQIIGFLCGFLIIIIGVFLLSS 292 (300)
T ss_pred HHHHHHHHHHHHHhccceEEEeehhHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhhheeec
Confidence 34444 5556999888777665544 45556666777888886543322222345688888899988763
No 107
>COG1593 DctQ TRAP-type C4-dicarboxylate transport system, large permease component [Carbohydrate transport and metabolism]
Probab=30.26 E-value=3.8e+02 Score=25.34 Aligned_cols=55 Identities=15% Similarity=0.167 Sum_probs=35.3
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHhhcc--CchhhhhhcchhhHHHHHHHHHHhhc
Q 022504 69 PQLTFSILCSFFLLSVFGCSSQIFSFVGIQYS--SPTLSTAMLNLIPAFTFVLAIIFRLE 126 (296)
Q Consensus 69 ~~~~~~~~~~~~~~g~~g~~~~~~~~~gl~~t--sa~~asil~~~~Pv~~~ils~~~~~E 126 (296)
++.+++|..+...-++....-......|+... ++++++.+...+.+ +++.+.+||
T Consensus 156 ~~~s~~e~~~~~~~a~~aLllpvIIigGi~~G~fTpTEaa~iav~yal---~v~~~vYr~ 212 (379)
T COG1593 156 ERASFKERLKAAVKALWALLLPVIIIGGIRSGIFTPTEAAAIAVLYAL---LVGAFVYRE 212 (379)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHH---HHHHHHHhh
Confidence 45568888887777776644444455555543 78888888775554 455556666
No 108
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=27.00 E-value=21 Score=32.12 Aligned_cols=27 Identities=11% Similarity=0.224 Sum_probs=0.0
Q ss_pred CchhhhhhcchhhHHHHHHHHH-Hhhcc
Q 022504 101 SPTLSTAMLNLIPAFTFVLAII-FRLEK 127 (296)
Q Consensus 101 sa~~asil~~~~Pv~~~ils~~-~~~E~ 127 (296)
+-+..+++.+.+-++++|+-.+ ++|+|
T Consensus 48 t~~a~~vl~sfAvvliiIIiIImlF~Rr 75 (381)
T PF05297_consen 48 TQGALTVLYSFAVVLIIIIIIIMLFKRR 75 (381)
T ss_dssp ----------------------------
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444445555555555554444 34444
No 109
>PF09656 PGPGW: Putative transmembrane protein (PGPGW); InterPro: IPR019099 This entry represents proteins that contain three predicted transmembrane helices and an unusual motif with consensus sequence PGPGW.
Probab=24.94 E-value=2.1e+02 Score=18.85 Aligned_cols=45 Identities=20% Similarity=0.305 Sum_probs=32.1
Q ss_pred hhhhHHHhhhhhhhhhhccCCCCcCCCCCCCCCCcccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022504 138 KSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRK 208 (296)
Q Consensus 138 ~~iG~~l~~~G~~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~G~ll~l~aa~~~a~~~v~~k~~~~~ 208 (296)
..+|..+.+.|++.+... || |.+..+++-...|.+....++..++
T Consensus 5 ~v~G~~lv~~Gii~~~lP-Gp-------------------------G~l~i~~GL~iLa~ef~wArr~l~~ 49 (53)
T PF09656_consen 5 GVLGWVLVVAGIIMLPLP-GP-------------------------GLLVIFLGLAILATEFPWARRLLRR 49 (53)
T ss_pred hhHHHHHHHHHHHhhcCC-CC-------------------------cHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 478999999999776532 21 6667777777788888777776655
No 110
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=23.88 E-value=2.7e+02 Score=23.61 Aligned_cols=59 Identities=8% Similarity=-0.058 Sum_probs=0.0
Q ss_pred ccchhhhHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhc
Q 022504 6 GSMRAALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHR 65 (296)
Q Consensus 6 ~~~~~~~~~l~l~~~~~~wg~~~i~~K~~~~~~~~p~~~~~~R~~~A~l~l~~~~~~~~r 65 (296)
++.+.++.++..+...+.|-..+..... +...++|..-...-.++|.+.+..-.++++|
T Consensus 142 ~r~~~~k~~~~~~~~~~~w~~~~~~~~~-lp~~inp~l~~~~~iiig~i~~~~~~~lkkk 200 (206)
T PF06570_consen 142 KRPSWWKYILISVLAMVLWIVIFVLTSF-LPPVINPVLPPWVYIIIGVIAFALRFYLKKK 200 (206)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHH-ccccCCcCCCHHHHHHHHHHHHHHHHHHHHH
No 111
>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]
Probab=23.61 E-value=6.3e+02 Score=24.84 Aligned_cols=50 Identities=12% Similarity=0.062 Sum_probs=29.9
Q ss_pred hhhhhcchhhHHHHHHHHHH----hhcccccccccccchhhhHHHhhhhhhhhhh
Q 022504 104 LSTAMLNLIPAFTFVLAIIF----RLEKLNWENKSSQAKSLGTFASIGGAFVVTF 154 (296)
Q Consensus 104 ~asil~~~~Pv~~~ils~~~----~~E~~~~~~~~~~~~~iG~~l~~~G~~ll~~ 154 (296)
..+.+|++.|+++++++-++ .|. .+.++.|+-+.-.|+.+.++|.-.+..
T Consensus 325 p~~~fQslNp~~Iii~~pI~a~l~~~l-~~~~~~ps~~~KFalGl~l~g~~fl~l 378 (498)
T COG3104 325 PPAWFQSLNPFFIILFSPILAALWTKL-GRGNKQPSTPIKFALGLILAGLGFLIL 378 (498)
T ss_pred CHHHHHhhCHHHHHHHHHHHHHHHhHh-hcCCCCCCcchHHHHHHHHHHHHHHHH
Confidence 45678899999999887443 221 112233555555666666666655543
No 112
>COG3086 RseC Positive regulator of sigma E activity [Signal transduction mechanisms]
Probab=22.96 E-value=96 Score=25.05 Aligned_cols=28 Identities=25% Similarity=0.382 Sum_probs=21.6
Q ss_pred HhhccCchhhhhhcchhhHHHHHHHHHH
Q 022504 96 GIQYSSPTLSTAMLNLIPAFTFVLAIIF 123 (296)
Q Consensus 96 gl~~tsa~~asil~~~~Pv~~~ils~~~ 123 (296)
|+..-+.-.++.+.|..|+++++++.++
T Consensus 68 Gi~EkslL~sA~LvYi~PL~~l~v~~~L 95 (150)
T COG3086 68 GIEEKSLLKSALLVYIFPLVGLFLGAIL 95 (150)
T ss_pred ccCcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566678899999999999888655
No 113
>KOG2766 consensus Predicted membrane protein [Function unknown]
Probab=22.48 E-value=1.6e+02 Score=26.49 Aligned_cols=136 Identities=8% Similarity=0.068 Sum_probs=79.4
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHH-HHHHHHHHHHH
Q 022504 7 SMRAALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFS-ILCSFFLLSVF 85 (296)
Q Consensus 7 ~~~~~~~~l~l~~~~~~wg~~~i~~K~~~~~~~~p~~~~~~R~~~A~l~l~~~~~~~~r~~~~~~~~~-~~~~~~~~g~~ 85 (296)
+.+..|+-.+++..+.+++.+.+.-..... +.|-.++...-.++++++-.. ..+.+|++...+.|. +....+...+.
T Consensus 161 gsnp~~GD~lvi~GATlYaVSNv~EEflvk-n~d~~elm~~lgLfGaIIsaI-Q~i~~~~~~~tl~w~~~i~~yl~f~L~ 238 (336)
T KOG2766|consen 161 GSNPVKGDFLVIAGATLYAVSNVSEEFLVK-NADRVELMGFLGLFGAIISAI-QFIFERHHVSTLHWDSAIFLYLRFALT 238 (336)
T ss_pred CCCCccCcEEEEecceeeeeccccHHHHHh-cCcHHHHHHHHHHHHHHHHHH-HHhhhccceeeEeehHHHHHHHHHHHH
Confidence 345678888889999999999998888765 589999998888888877443 355566654444442 22222221111
Q ss_pred HHHHHHHHHHHhhccCchhhhhhcchhhHHHHHHHHHHhhcccccccccccchhhhHHHhhhhhhhh
Q 022504 86 GCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVV 152 (296)
Q Consensus 86 g~~~~~~~~~gl~~tsa~~asil~~~~Pv~~~ils~~~~~E~~~~~~~~~~~~~iG~~l~~~G~~ll 152 (296)
.++.+-+.-.=++.++++.-.+=.-+.-.|..++ ..++-+.+|- -.++......|.++-
T Consensus 239 MFllYsl~pil~k~~~aT~~nlslLTsDmwsl~i--~~FgYhv~wL------Y~laF~~i~~GliiY 297 (336)
T KOG2766|consen 239 MFLLYSLAPILIKTNSATMFNLSLLTSDMWSLLI--RTFGYHVDWL------YFLAFATIATGLIIY 297 (336)
T ss_pred HHHHHHhhHHheecCCceEEEhhHhHHHHHHHHH--HHHhcchhhh------hHHHHHHHHHhhEEe
Confidence 1221112222244444443333233455565555 3345556554 367777888887654
No 114
>PRK02237 hypothetical protein; Provisional
Probab=22.16 E-value=1e+02 Score=23.62 Aligned_cols=20 Identities=15% Similarity=0.202 Sum_probs=16.9
Q ss_pred cccchhhhHHHhhhhhhhhh
Q 022504 134 SSQAKSLGTFASIGGAFVVT 153 (296)
Q Consensus 134 ~~~~~~iG~~l~~~G~~ll~ 153 (296)
|.+..++|..++++|+.++.
T Consensus 85 Pd~~D~iGa~v~L~G~~iI~ 104 (109)
T PRK02237 85 PDRWDWIGAAICLVGMAVIM 104 (109)
T ss_pred CChhHHHhHHHHHHhHHHhe
Confidence 45567999999999998875
No 115
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=22.14 E-value=5.4e+02 Score=23.44 Aligned_cols=131 Identities=20% Similarity=0.126 Sum_probs=72.2
Q ss_pred CCccc---cchhhhHHHHHHHHHHHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHHHHHHHHHhhc-CC-C--CCC-C
Q 022504 2 GVDMG---SMRAALPSVGMVIVLLAQVSNMEVIKAAMSKGI-NKYVIIVYSDALSSLFFLFCSFLFHR-SE-R--PQL-T 72 (296)
Q Consensus 2 ~~~~~---~~~~~~~~l~l~~~~~~wg~~~i~~K~~~~~~~-~p~~~~~~R~~~A~l~l~~~~~~~~r-~~-~--~~~-~ 72 (296)
|||-. ..-.+.+.++-+.+.+.=+.+.+-+|..+..-- .-+.+.++-.+.|.++.+|...+.+. ++ + +.. .
T Consensus 172 GvdqE~~~~~ls~~GvifGVlaSl~vAlnaiytkk~l~~v~~~iw~lt~ynnv~a~lLflpll~lnge~~~v~~~~~l~a 251 (347)
T KOG1442|consen 172 GVDQEGSTGTLSWIGVIFGVLASLAVALNAIYTKKVLPPVGDCIWRLTAYNNVNALLLFLPLLILNGEFQAVVGFPHLPA 251 (347)
T ss_pred ccccccccCccchhhhHHHHHHHHHHHHHHHhhheecccccCeehhhHHHHHHHHHHHHHHHHHHcchHHHHcCcccchH
Confidence 55544 233567888888888888999999997654322 35678888889999988887655211 11 1 222 3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccCchhhhhhcchhhHHHHHHHHHHhhccccccc
Q 022504 73 FSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWEN 132 (296)
Q Consensus 73 ~~~~~~~~~~g~~g~~~~~~~~~gl~~tsa~~asil~~~~Pv~~~ils~~~~~E~~~~~~ 132 (296)
.+-|..+.+-|++|+...+.-.+=+|-|||-+--+=...--.-=.+++..++.|-.+..+
T Consensus 252 ~~Fw~~mtLsglfgF~mgyvTg~QIK~TSplThnISgTAka~aQTvlAv~~y~E~ks~lw 311 (347)
T KOG1442|consen 252 IKFWILMTLSGLFGFAMGYVTGWQIKVTSPLTHNISGTAKAAAQTVLAVAYYSETKSGLW 311 (347)
T ss_pred HHHHHHHHHHHHHHHHhhheeeEEEEecccceeeecHhHHHHHHHHHHHHHHHHHhhhhe
Confidence 444555555666662212222223455555431111111111112356677888765554
No 116
>PF11139 DUF2910: Protein of unknown function (DUF2910); InterPro: IPR021315 Some members in this bacterial family annotate the proteins as cytochrome C biogenesis proteins however this cannot be confirmed. Currently no function for this family is known.
Probab=21.42 E-value=5e+02 Score=21.91 Aligned_cols=66 Identities=15% Similarity=0.198 Sum_probs=42.3
Q ss_pred HHHHHHHHHhhccCchhhh-----------hhcchhhHHHHHHHHHHhhcccc-----cccc--cccchhhhHHHhhhhh
Q 022504 88 SSQIFSFVGIQYSSPTLST-----------AMLNLIPAFTFVLAIIFRLEKLN-----WENK--SSQAKSLGTFASIGGA 149 (296)
Q Consensus 88 ~~~~~~~~gl~~tsa~~as-----------il~~~~Pv~~~ils~~~~~E~~~-----~~~~--~~~~~~iG~~l~~~G~ 149 (296)
-+...|..+......+..+ .+....|..+.++.+...+||.+ .++| ...++..+.++.+.|+
T Consensus 127 ~~~~~~laa~~~I~~~~~~~~~~~~~l~~y~~i~~~~~~~pll~~~~~~~r~~~~l~r~~~wl~~~~~~i~~~i~~i~G~ 206 (214)
T PF11139_consen 127 KTMLPYLAAIAIIAASGLSPGTQVVALVVYCLIASLPALLPLLAYLVAPERAEPWLERLRSWLRRHSRQILAVILLIVGA 206 (214)
T ss_pred ccHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHH
Confidence 3456666666555433322 12347888888899888887762 1222 2345788999999999
Q ss_pred hhhh
Q 022504 150 FVVT 153 (296)
Q Consensus 150 ~ll~ 153 (296)
.++.
T Consensus 207 ~l~~ 210 (214)
T PF11139_consen 207 LLLG 210 (214)
T ss_pred HHHH
Confidence 8764
No 117
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=20.91 E-value=94 Score=23.70 Aligned_cols=21 Identities=14% Similarity=0.300 Sum_probs=17.3
Q ss_pred cccchhhhHHHhhhhhhhhhh
Q 022504 134 SSQAKSLGTFASIGGAFVVTF 154 (296)
Q Consensus 134 ~~~~~~iG~~l~~~G~~ll~~ 154 (296)
|.+..++|..+|++|+.++.+
T Consensus 83 Pd~~D~iGa~i~L~G~~iI~~ 103 (107)
T PF02694_consen 83 PDRWDWIGAAICLVGVAIILF 103 (107)
T ss_pred CChHHHHhHHHHHHhHHheEe
Confidence 455679999999999988763
Done!