Query 022504
Match_columns 296
No_of_seqs 130 out of 1288
Neff 8.3
Searched_HMMs 29240
Date Mon Mar 25 06:33:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022504.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022504hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3b5d_A Multidrug transporter E 98.1 3.4E-05 1.1E-09 58.5 10.1 68 81-154 34-103 (110)
2 2i68_A Protein EMRE; transmemb 98.0 6.2E-06 2.1E-10 65.1 6.0 69 81-155 34-104 (137)
3 2i68_A Protein EMRE; transmemb 58.2 5.7 0.0002 30.6 2.5 38 255-293 35-77 (137)
4 3arc_L Photosystem II reaction 54.3 15 0.00052 21.1 3.2 27 2-28 9-35 (37)
5 3tgu_G UQCRQ, mitochondrial ub 5.2 5.4E+02 0.019 17.5 3.0 22 251-273 44-65 (81)
6 1pp9_G Ubiquinol-cytochrome C 4.8 6E+02 0.021 17.2 3.0 21 252-273 45-65 (81)
7 2hac_A T-cell surface glycopro 4.6 4.5E+02 0.015 14.7 1.8 14 117-130 17-30 (33)
8 2k9p_A Pheromone alpha factor 4.4 8.3E+02 0.029 16.4 3.5 18 46-63 26-43 (80)
9 1afo_A Glycophorin A; integral 4.3 3.7E+02 0.013 15.7 1.3 17 139-155 16-32 (40)
10 1q90_R Cytochrome B6-F complex 3.7 8.4E+02 0.029 14.8 3.9 38 69-106 7-45 (49)
No 1
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.06 E-value=3.4e-05 Score=58.51 Aligned_cols=68 Identities=13% Similarity=0.219 Sum_probs=60.4
Q ss_pred HHHHHH-HHHHHHHHHHhhccCchhhhhh-cchhhHHHHHHHHHHhhcccccccccccchhhhHHHhhhhhhhhhh
Q 022504 81 LLSVFG-CSSQIFSFVGIQYSSPTLSTAM-LNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTF 154 (296)
Q Consensus 81 ~~g~~g-~~~~~~~~~gl~~tsa~~asil-~~~~Pv~~~ils~~~~~E~~~~~~~~~~~~~iG~~l~~~G~~ll~~ 154 (296)
+.+++. ...+.++..++++.+.+.+..+ ..+.|+++.++++++++||++++ |++|+.+.+.|++++..
T Consensus 34 ~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~------~~~Gi~lIi~Gv~~l~~ 103 (110)
T 3b5d_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLP------AIIGMMLICAGVLIINL 103 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHHhc
Confidence 466666 7888999999999999999888 79999999999999999998776 59999999999988753
No 2
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.05 E-value=6.2e-06 Score=65.07 Aligned_cols=69 Identities=13% Similarity=0.216 Sum_probs=51.8
Q ss_pred HHHHHH-HHHHHHHHHHhhccCchhhhhh-cchhhHHHHHHHHHHhhcccccccccccchhhhHHHhhhhhhhhhhc
Q 022504 81 LLSVFG-CSSQIFSFVGIQYSSPTLSTAM-LNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFY 155 (296)
Q Consensus 81 ~~g~~g-~~~~~~~~~gl~~tsa~~asil-~~~~Pv~~~ils~~~~~E~~~~~~~~~~~~~iG~~l~~~G~~ll~~~ 155 (296)
+++++. .+.+.++..++++.+++.+..+ .++.|+++.++++++++|+++++ +++|+.+.++|++++...
T Consensus 34 ~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~------~~~Gi~LIi~GV~ll~~~ 104 (137)
T 2i68_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLP------AIIGMMLICAGVLIINLL 104 (137)
T ss_dssp CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------------CHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHHhcC
Confidence 566667 8889999999999999999888 89999999999999999999877 599999999999988643
No 3
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=58.25 E-value=5.7 Score=30.59 Aligned_cols=38 Identities=11% Similarity=-0.159 Sum_probs=24.1
Q ss_pred HHHhhhHHHHHHHHHHHhcCCceeeecc----cccHHH-HHHhh
Q 022504 255 SLLALGFELACAHGACRELDLFMYQCSS----PWPLSS-LLSWM 293 (296)
Q Consensus 255 ~gv~~t~~ay~l~~~~l~~~g~~~~~s~----~~p~~~-l~~~~ 293 (296)
+++++++++|.+|++++|+.+++. +.. +.|+.+ +++|.
T Consensus 35 l~i~~~~ls~~l~~~alk~i~~s~-ay~iw~~l~pv~~~l~g~l 77 (137)
T 2i68_A 35 GTIICYCASFWLLAQTLAYIPTGI-AYAIWSGVGIVLISLLSWG 77 (137)
T ss_dssp HHHHHHHHHHHHHHHHHC-----C-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCChhH-HHHHHHHHHHHHHHHHHHH
Confidence 566789999999999999988887 433 456663 66654
No 4
>3arc_L Photosystem II reaction center protein L; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_L* 3a0b_L* 3a0h_L* 2axt_L* 3bz1_L* 3bz2_L* 3kzi_L* 3prq_L* 3prr_L*
Probab=54.29 E-value=15 Score=21.08 Aligned_cols=27 Identities=15% Similarity=0.133 Sum_probs=22.1
Q ss_pred CCccccchhhhHHHHHHHHHHHHHHHH
Q 022504 2 GVDMGSMRAALPSVGMVIVLLAQVSNM 28 (296)
Q Consensus 2 ~~~~~~~~~~~~~l~l~~~~~~wg~~~ 28 (296)
.||.+|.+-+.+.+..+..+++++..+
T Consensus 9 ~VELNRTSLy~GLLlifvlavlFssyf 35 (37)
T 3arc_L 9 PVELNRTSLYLGLLLILVLALLFSSYF 35 (37)
T ss_dssp CBCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cceechhhHHHHHHHHHHHHHHhhhhc
Confidence 478888888889888888888887765
No 5
>3tgu_G UQCRQ, mitochondrial ubiquinol-cytochrome C reductase UB binding protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein; HET: HEM WF3 UQ CDL PEE HEC BOG; 2.70A {Gallus gallus} PDB: 3cwb_G* 3h1i_G* 3h1h_G* 3h1k_G* 3h1l_G* 3h1j_G* 3l71_G* 3l72_G* 3l73_G* 3l74_G* 3l75_G* 3l70_G*
Probab=5.25 E-value=5.4e+02 Score=17.47 Aligned_cols=22 Identities=5% Similarity=-0.337 Sum_probs=17.6
Q ss_pred HHHHHHHhhhHHHHHHHHHHHhc
Q 022504 251 AVLYSLLALGFELACAHGACREL 273 (296)
Q Consensus 251 ~lly~gv~~t~~ay~l~~~~l~~ 273 (296)
.++|.+. ..+++|.+|.|+.++
T Consensus 44 q~l~v~p-Pfi~~Y~i~~Wa~~~ 65 (81)
T 3tgu_G 44 QVFKVAP-PFLGAYLLYSWGTQE 65 (81)
T ss_dssp HHHHHHH-HHHHHHHHHHHHHHH
T ss_pred hhhHhhH-HHHHHHHHHHHHHHH
Confidence 4566665 789999999999876
No 6
>1pp9_G Ubiquinol-cytochrome C reductase complex ubiquino protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: f.23.13.1 PDB: 1bgy_G* 1be3_G* 1l0n_G* 1ntk_G* 1ntm_G* 1ntz_G* 1nu1_G* 1l0l_G* 1ppj_G* 1sqb_G* 1sqp_G* 1sqq_G* 1sqv_G* 1sqx_G* 2a06_G* 2fyu_G* 2ybb_G* 1bcc_G* 2bcc_G* 3bcc_G* ...
Probab=4.79 E-value=6e+02 Score=17.19 Aligned_cols=21 Identities=5% Similarity=-0.289 Sum_probs=15.1
Q ss_pred HHHHHHhhhHHHHHHHHHHHhc
Q 022504 252 VLYSLLALGFELACAHGACREL 273 (296)
Q Consensus 252 lly~gv~~t~~ay~l~~~~l~~ 273 (296)
++|.+. ..+++|.+|.|+.++
T Consensus 45 ~l~v~p-Pfv~~Y~i~~Wa~~~ 65 (81)
T 1pp9_G 45 ILRVAP-PFVAFYLVYTWGTQE 65 (81)
T ss_dssp HHHHHH-HHHHHHHHHHHHHHH
T ss_pred ceeeeh-hHHHHHHHHHHHHHH
Confidence 345544 778888889888775
No 7
>2hac_A T-cell surface glycoprotein CD3 zeta chain; transmembrane, alpha helix, membrane protein; NMR {Homo sapiens}
Probab=4.56 E-value=4.5e+02 Score=14.68 Aligned_cols=14 Identities=21% Similarity=0.358 Sum_probs=9.2
Q ss_pred HHHHHHHhhccccc
Q 022504 117 FVLAIIFRLEKLNW 130 (296)
Q Consensus 117 ~ils~~~~~E~~~~ 130 (296)
+++..++.+||++.
T Consensus 17 ii~T~Ly~R~K~~~ 30 (33)
T 2hac_A 17 VILTALFLRVKFSR 30 (33)
T ss_dssp HHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhhc
Confidence 44566777888754
No 8
>2k9p_A Pheromone alpha factor receptor; GPCR, micelle, structurral biology, fragment, G-protein COUP receptor, glycoprotein, membrane; NMR {Saccharomyces cerevisiae}
Probab=4.37 E-value=8.3e+02 Score=16.45 Aligned_cols=18 Identities=6% Similarity=-0.040 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 022504 46 VYSDALSSLFFLFCSFLF 63 (296)
Q Consensus 46 ~~R~~~A~l~l~~~~~~~ 63 (296)
..|...+.+.++.++...
T Consensus 26 G~~iGAs~llliil~llt 43 (80)
T 2k9p_A 26 GVRSGAAALTLIVVWITS 43 (80)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 445555444444444443
No 9
>1afo_A Glycophorin A; integral membrane protein, transmembrane helix interactions, membrane protein folding; NMR {Homo sapiens} SCOP: j.35.1.1 PDB: 2kpf_A
Probab=4.27 E-value=3.7e+02 Score=15.67 Aligned_cols=17 Identities=24% Similarity=0.511 Sum_probs=0.0
Q ss_pred hhhHHHhhhhhhhhhhc
Q 022504 139 SLGTFASIGGAFVVTFY 155 (296)
Q Consensus 139 ~iG~~l~~~G~~ll~~~ 155 (296)
+.|+..+++|.+++..+
T Consensus 16 I~~vmaGiIG~IllI~y 32 (40)
T 1afo_A 16 IFGVMAGVIGTILLISY 32 (40)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
No 10
>1q90_R Cytochrome B6-F complex iron-sulfur subunit; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.12.1
Probab=3.66 E-value=8.4e+02 Score=14.76 Aligned_cols=38 Identities=13% Similarity=0.162 Sum_probs=0.0
Q ss_pred CCCCHHHHHHHHHHHHHH-HHHHHHHHHHhhccCchhhh
Q 022504 69 PQLTFSILCSFFLLSVFG-CSSQIFSFVGIQYSSPTLST 106 (296)
Q Consensus 69 ~~~~~~~~~~~~~~g~~g-~~~~~~~~~gl~~tsa~~as 106 (296)
|..+||++...+..|..+ ...-..+=+.-...++...+
T Consensus 7 pdm~RRqfln~l~~G~~a~~a~~~~~P~v~ffvpP~~gg 45 (49)
T 1q90_R 7 PDMNKRNIMNLILAGGAGLPITTLALGYGAFFVPPSSGG 45 (49)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC----
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHhhheeecCCccCC
Done!