Query 022504
Match_columns 296
No_of_seqs 130 out of 1288
Neff 8.3
Searched_HMMs 13730
Date Mon Mar 25 06:34:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022504.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/022504hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2axtl1 f.23.31.1 (L:1-37) Pho 46.5 11 0.00078 20.2 3.1 27 2-28 9-35 (37)
2 d2e74g1 f.23.26.1 (G:9-35) Pet 11.0 99 0.0072 14.8 2.8 18 182-199 2-19 (27)
3 d1ppjg_ f.23.13.1 (G:) Ubiquin 6.1 2.2E+02 0.016 17.6 3.0 23 250-273 43-65 (75)
4 d3cx5h1 f.23.13.1 (H:2-94) Ubi 4.2 3.1E+02 0.023 17.6 2.9 22 251-273 54-75 (93)
5 d1wpga4 f.33.1.1 (A:1-124,A:24 3.1 1.1E+03 0.079 18.8 11.6 63 38-100 264-337 (472)
6 d1u7ga_ f.44.1.1 (A:) Ammonium 2.7 1.2E+03 0.084 18.4 17.1 26 208-233 305-330 (383)
7 d1zs4a1 a.35.1.9 (A:4-81) Regu 2.1 1.9E+02 0.014 17.8 -0.1 25 1-25 30-58 (78)
8 d1y5ic1 f.21.3.1 (C:1-225) Res 2.0 1.1E+03 0.078 16.7 4.5 15 72-86 123-137 (225)
9 d1q90a3 f.23.23.1 (A:248-292) 1.8 7.1E+02 0.051 13.4 4.2 29 181-209 4-32 (45)
10 d2h8pc1 f.14.1.1 (C:22-78) Pot 1.6 8.3E+02 0.06 13.6 4.7 22 232-253 27-50 (57)
No 1
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=46.53 E-value=11 Score=20.20 Aligned_cols=27 Identities=15% Similarity=0.133 Sum_probs=20.7
Q ss_pred CCccccchhhhHHHHHHHHHHHHHHHH
Q 022504 2 GVDMGSMRAALPSVGMVIVLLAQVSNM 28 (296)
Q Consensus 2 ~~~~~~~~~~~~~l~l~~~~~~wg~~~ 28 (296)
.||.++.+-+.+.+..+..++++++.+
T Consensus 9 ~veLNrtsLy~GlLlifvl~vLFssYf 35 (37)
T d2axtl1 9 PVELNRTSLYLGLLLILVLALLFSSYF 35 (37)
T ss_dssp CBCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccchhhHHHHHHHHHHHHHHHHHHh
Confidence 367778777888888888888887665
No 2
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=10.97 E-value=99 Score=14.84 Aligned_cols=18 Identities=22% Similarity=0.399 Sum_probs=13.5
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 022504 182 ILGGFFLAAEAFMNSAWF 199 (296)
Q Consensus 182 ~~G~ll~l~aa~~~a~~~ 199 (296)
.+|.+..-++.+.||.|-
T Consensus 2 vlgli~~tl~glf~aayq 19 (27)
T d2e74g1 2 VLGLVFATLGGLFYAAYQ 19 (27)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred eeeehHHHHHHHHHHHHH
Confidence 357777788888888873
No 3
>d1ppjg_ f.23.13.1 (G:) Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Cow (Bos taurus) [TaxId: 9913]}
Probab=6.08 E-value=2.2e+02 Score=17.59 Aligned_cols=23 Identities=4% Similarity=-0.255 Sum_probs=17.7
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHhc
Q 022504 250 VAVLYSLLALGFELACAHGACREL 273 (296)
Q Consensus 250 ~~lly~gv~~t~~ay~l~~~~l~~ 273 (296)
-.++|.+. ..+++|.+|.|+-++
T Consensus 43 ~~~l~v~P-Pfi~~Y~iy~W~~~~ 65 (75)
T d1ppjg_ 43 ACILRVAP-PFVAFYLVYTWGTQE 65 (75)
T ss_dssp HHHHHHHH-HHHHHHHHHHHHHHH
T ss_pred HhceEEcC-HHHHHHHHHHHHHHH
Confidence 35666655 788999999999875
No 4
>d3cx5h1 f.23.13.1 (H:2-94) Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=4.16 E-value=3.1e+02 Score=17.60 Aligned_cols=22 Identities=18% Similarity=-0.000 Sum_probs=17.8
Q ss_pred HHHHHHHhhhHHHHHHHHHHHhc
Q 022504 251 AVLYSLLALGFELACAHGACREL 273 (296)
Q Consensus 251 ~lly~gv~~t~~ay~l~~~~l~~ 273 (296)
.++|.+. ..+++|..|.|+-++
T Consensus 54 q~lyv~P-Pfi~~Y~iy~Wa~~~ 75 (93)
T d3cx5h1 54 QFLYVLI-PAGIYWYWWKNGNEY 75 (93)
T ss_dssp THHHHHH-HHHHHHHHHHHHHHH
T ss_pred hceEEcc-hHHHHHHHHHHHHHH
Confidence 4667666 789999999999885
No 5
>d1wpga4 f.33.1.1 (A:1-124,A:240-343,A:751-994) Calcium ATPase, transmembrane domain M {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Probab=3.05 E-value=1.1e+03 Score=18.82 Aligned_cols=63 Identities=10% Similarity=0.102 Sum_probs=32.7
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHH------HhhcCCC----CCCCHHHHHHHHHHHHHH-HHHHHHHHHHhhcc
Q 022504 38 GINKYVIIVYSDALSSLFFLFCSF------LFHRSER----PQLTFSILCSFFLLSVFG-CSSQIFSFVGIQYS 100 (296)
Q Consensus 38 ~~~p~~~~~~R~~~A~l~l~~~~~------~~~r~~~----~~~~~~~~~~~~~~g~~g-~~~~~~~~~gl~~t 100 (296)
-++|.++.+.-++.-.+.-+.+.. ..+|+.+ +..+++.+......|..- ......+++...+.
T Consensus 264 pl~~~qILwinli~d~lpaiaL~~ep~d~~iM~~~Pr~~~~~li~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~ 337 (472)
T d1wpga4 264 ALIPVQLLWVNLVTDGLPATALGFNPPDLDIMDRPPRSPKEPLISGWLFFRYMAIGGYVGAATVGAAAWWFMYA 337 (472)
T ss_dssp SCCHHHHHHHHHTTTHHHHHHHTTCCCCSGGGGSCCCCTTCCSSCTHHHHHHHHHHHHHHHHHHHHHHHHTTTS
T ss_pred cccHHHHHHHHHHhHHHHHHHHhcCCCchhhhcCCCCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 467888888887765543222211 0111111 123556666666666655 55555556655443
No 6
>d1u7ga_ f.44.1.1 (A:) Ammonium transporter AmtB {Escherichia coli [TaxId: 562]}
Probab=2.70 E-value=1.2e+03 Score=18.41 Aligned_cols=26 Identities=0% Similarity=-0.188 Sum_probs=15.3
Q ss_pred hcchhHHHHHHHHHHHHHHHHHHHHH
Q 022504 208 KFAAVLIIMFYLFFFNTILSTAFALI 233 (296)
Q Consensus 208 ~~~~~~~~~~~~~~~g~i~~~~~~~~ 233 (296)
|+|||..........|..-.+...++
T Consensus 305 ~iDD~~~~~~vHg~~Gi~G~l~~glf 330 (383)
T d1u7ga_ 305 RVDDPCDVFGVHGVCGIVGCIMTGIF 330 (383)
T ss_dssp CSCCGGGHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccceEeehhhhHHHHHHHHHHh
Confidence 45677766677766665544444443
No 7
>d1zs4a1 a.35.1.9 (A:4-81) Regulatory protein cII {Bacteriophage lambda [TaxId: 10710]}
Probab=2.14 E-value=1.9e+02 Score=17.79 Aligned_cols=25 Identities=24% Similarity=0.381 Sum_probs=13.7
Q ss_pred CCCccccchhhh----HHHHHHHHHHHHH
Q 022504 1 MGVDMGSMRAAL----PSVGMVIVLLAQV 25 (296)
Q Consensus 1 ~~~~~~~~~~~~----~~l~l~~~~~~wg 25 (296)
||||=.+-+||| +-..+.++.+=||
T Consensus 30 mGv~esqiSRwK~~f~~q~smlLAvLE~G 58 (78)
T d1zs4a1 30 VGVDKSQISRWKRDWIPKFSMLLAVLEWG 58 (78)
T ss_dssp HTSCHHHHHHHHHHTHHHHHHHHHHHTTC
T ss_pred hCCCHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 577755555554 3444555555554
No 8
>d1y5ic1 f.21.3.1 (C:1-225) Respiratory nitrate reductase 1 gamma chain {Escherichia coli [TaxId: 562]}
Probab=1.99 E-value=1.1e+03 Score=16.71 Aligned_cols=15 Identities=20% Similarity=-0.024 Sum_probs=7.3
Q ss_pred CHHHHHHHHHHHHHH
Q 022504 72 TFSILCSFFLLSVFG 86 (296)
Q Consensus 72 ~~~~~~~~~~~g~~g 86 (296)
++.|+..+.++..+.
T Consensus 123 ~~~d~~~L~ll~~i~ 137 (225)
T d1y5ic1 123 TGADILILSLLVIQC 137 (225)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHH
Confidence 455655544444333
No 9
>d1q90a3 f.23.23.1 (A:248-292) Cytochrome f subunit of the cytochrome b6f complex, transmembrane anchor {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=1.79 E-value=7.1e+02 Score=13.38 Aligned_cols=29 Identities=14% Similarity=0.219 Sum_probs=21.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 022504 181 WILGGFFLAAEAFMNSAWFILQALILRKF 209 (296)
Q Consensus 181 ~~~G~ll~l~aa~~~a~~~v~~k~~~~~~ 209 (296)
...|.+..+.+.+.--+..|+-||-.++.
T Consensus 4 Rv~gll~F~~~v~laQi~LVLKKKQfEKV 32 (45)
T d1q90a3 4 RIQGLLVFFSFVLLTQVLLVLKKKQFEKV 32 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788888888887778888877766664
No 10
>d2h8pc1 f.14.1.1 (C:22-78) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}
Probab=1.63 E-value=8.3e+02 Score=13.63 Aligned_cols=22 Identities=5% Similarity=-0.231 Sum_probs=10.0
Q ss_pred HHHhcCC--CcceeccchhHHHHH
Q 022504 232 LIVVSEP--SDWKLGLDIGLVAVL 253 (296)
Q Consensus 232 ~~~~~~~--~~~~~~~~~~~~~ll 253 (296)
...|++. ..++..++..||+++
T Consensus 27 y~~E~~~~~~~f~sip~a~WWaiv 50 (57)
T d2h8pc1 27 VLAERGAPGAQLITYPRALWWACE 50 (57)
T ss_dssp HHHHTTSTTCCCCSHHHHHHHHHH
T ss_pred HHHhcCCCCccccccchhhhhhee
Confidence 3446532 234333444566653
Done!