BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022505
(296 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2HVA|A Chain A, Solution Structure Of The Haem-Binding Protein P22hbp
Length = 192
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 55/122 (45%), Gaps = 8/122 (6%)
Query: 173 TQSDGEKMEMTTPVISKKLEDQD-----KWQMSFVMPSKYGANLPLPKDPSVRIKEXXXX 227
T G M MT PV ++D K ++ F +P+++ + P P D SV+I+E
Sbjct: 71 TNDKGVGMGMTVPVSFAVFPNEDGSLQKKLKVWFRIPNQFQGSPPAPSDESVKIEEREGI 130
Query: 228 XXXXXXFSGFVTDEDVKRRELKLRDALKGDRQFRVKEGASVEVAQYNPPFTLPFTRRNEI 287
F G+ + D +LR L+G +G A Y+PP P+ RRNE+
Sbjct: 131 TVYSTQFGGYAKEADYVAHATQLRTTLEGTPA--TYQGDVYYCAGYDPPMK-PYGRRNEV 187
Query: 288 AL 289
L
Sbjct: 188 WL 189
>pdb|4A1M|A Chain A, Nmr Structure Of Protoporphyrin-Ix Bound Murine P22hbp
Length = 195
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 55/122 (45%), Gaps = 8/122 (6%)
Query: 173 TQSDGEKMEMTTPVISKKLEDQD-----KWQMSFVMPSKYGANLPLPKDPSVRIKEXXXX 227
T G M MT PV ++D K ++ F +P+++ + P P D SV+I+E
Sbjct: 74 TNDKGVGMGMTVPVSFAVFPNEDGSLQKKLKVWFRIPNQFQGSPPAPSDESVKIEEREGI 133
Query: 228 XXXXXXFSGFVTDEDVKRRELKLRDALKGDRQFRVKEGASVEVAQYNPPFTLPFTRRNEI 287
F G+ + D +LR L+G +G A Y+PP P+ RRNE+
Sbjct: 134 TVYSTQFGGYAKEADYVAHATQLRTTLEGTPA--TYQGDVYYCAGYDPPMK-PYGRRNEV 190
Query: 288 AL 289
L
Sbjct: 191 WL 192
>pdb|2GOV|A Chain A, Solution Structure Of Murine P22hbp
Length = 195
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 55/122 (45%), Gaps = 8/122 (6%)
Query: 173 TQSDGEKMEMTTPVISKKLEDQD-----KWQMSFVMPSKYGANLPLPKDPSVRIKEXXXX 227
T G M MT PV ++D K ++ F +P+++ + P P D SV+I+E
Sbjct: 74 TNDKGVGMGMTVPVSFAVFPNEDGSLQKKLKVWFRIPNQFQGSPPAPSDESVKIEEREGI 133
Query: 228 XXXXXXFSGFVTDEDVKRRELKLRDALKGDRQFRVKEGASVEVAQYNPPFTLPFTRRNEI 287
F G+ + D +LR L+G +G A Y+PP P+ RRNE+
Sbjct: 134 TVYSTQFGGYAKEADYVAHATQLRTTLEGTPA--TYQGDVYYCAGYDPPMK-PYGRRNEV 190
Query: 288 AL 289
L
Sbjct: 191 WL 192
>pdb|4B0Y|A Chain A, Determination Of X-Ray Structure Of Human Soul By
Molecular Replacement
Length = 227
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 72/178 (40%), Gaps = 20/178 (11%)
Query: 113 GQYEIREVESYFIAETMMPGRTGFDFNGASRS-FNVLAEYLFGKNTKRETMEMTTPVITR 171
G YEIR Y A+ + D++ A ++ F L Y+ GKN K ++MT PV +
Sbjct: 58 GSYEIRH---YGPAKWVSTSVESMDWDSAIQTGFTKLNSYIQGKNEKEMKIKMTAPVTSY 114
Query: 172 KTQSDGEKMEMTTPVISKKLEDQDKWQMSFVMPSKYGANLPLPKDPSVRIKEXXXXXXXX 231
G E T + S +PS+ + P P + V I++
Sbjct: 115 VEPGSGPFSESTITI-------------SLYIPSEQQFDPPRPLESDVFIEDRAEMTVFV 161
Query: 232 XXFSGFVTDEDVKRRELKLRDALKGDRQFRVKEGASVEVAQYNPPFTLPFTRRNEIAL 289
F GF + + + + L L L+ D +V + A YN P L R NE+ L
Sbjct: 162 RSFDGFSSAQKNQEQLLTLASILREDG--KVFDEKVYYTAGYNSPVKL-LNRNNEVWL 216
>pdb|3R8J|A Chain A, Crystal Structure Of Human Soul Protein (Orthorhombic
Form)
pdb|3R8J|B Chain B, Crystal Structure Of Human Soul Protein (Orthorhombic
Form)
pdb|3R8K|A Chain A, Crystal Structure Of Human Soul Protein (Hexagonal Form)
pdb|3R8K|B Chain B, Crystal Structure Of Human Soul Protein (Hexagonal Form)
pdb|3R8K|C Chain C, Crystal Structure Of Human Soul Protein (Hexagonal Form)
pdb|3R8K|D Chain D, Crystal Structure Of Human Soul Protein (Hexagonal Form)
Length = 212
Score = 41.2 bits (95), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 72/178 (40%), Gaps = 20/178 (11%)
Query: 113 GQYEIREVESYFIAETMMPGRTGFDFNGASRS-FNVLAEYLFGKNTKRETMEMTTPVITR 171
G YEIR Y A+ + D++ A ++ F L Y+ GKN K ++MT PV +
Sbjct: 39 GSYEIRH---YGPAKWVSTSVESMDWDSAIQTGFTKLNSYIQGKNEKEMKIKMTAPVTSY 95
Query: 172 KTQSDGEKMEMTTPVISKKLEDQDKWQMSFVMPSKYGANLPLPKDPSVRIKEXXXXXXXX 231
G E T +S +PS+ + P P + V I++
Sbjct: 96 VEPGSGPFSESTI-------------TISLYIPSEQQFDPPRPLESDVFIEDRAEMTVFV 142
Query: 232 XXFSGFVTDEDVKRRELKLRDALKGDRQFRVKEGASVEVAQYNPPFTLPFTRRNEIAL 289
F GF + + + + L L L+ D +V + A YN P L R NE+ L
Sbjct: 143 RSFDGFSSAQKNQEQLLTLASILREDG--KVFDEKVYYTAGYNSPVKL-LNRNNEVWL 197
>pdb|3K3W|B Chain B, Thermostable Penicillin G Acylase From Alcaligenes
Faecalis In Orthorhombic Form
pdb|3ML0|B Chain B, Thermostable Penicillin G Acylase From Alcaligenes
Faecalis In Tetragonal Form
Length = 551
Score = 31.6 bits (70), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 48/117 (41%), Gaps = 13/117 (11%)
Query: 68 RLLMDLATETAKYVFP---KRFESQNLEEALMAVPDLETVKFKVLSRRGQ------YEIR 118
RL + + A++ P RF +N +P T F RG ++ +
Sbjct: 429 RLSQEQGAQMARWTMPTSVHRFSDKNFTGTPQTMPG-NTFAFTGYQNRGTENNRVVFDAK 487
Query: 119 EVESYFIAETMMPGRTGFDFNGASRSFNVLAEYLFGKNTKRETMEMTTPVITRKTQS 175
VE + M PG++GF RS + + +N + +TM++T I R QS
Sbjct: 488 GVE---FCDAMPPGQSGFTDRNGVRSPHYEDQLKLYENFECKTMDVTHADIRRNAQS 541
>pdb|1W3W|A Chain A, The 2.1 Angstroem Resolution Structure Of Annexin A8
Length = 327
Score = 31.6 bits (70), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 52/94 (55%), Gaps = 11/94 (11%)
Query: 32 IINSIT--TNNERKPIS-AFEARVS--LVFALASQTSSLSQRLLMDLATETAKYVFPKRF 86
II+ +T +N +R+ I+ +F+A+ L L S+ S +RL++ L P R+
Sbjct: 44 IIDVLTKRSNTQRQQIAKSFKAQFGKDLTETLKSELSGKFERLIVALMYP------PYRY 97
Query: 87 ESQNLEEALMAVPDLETVKFKVLSRRGQYEIREV 120
E++ L +A+ + E V ++L+ R + ++RE+
Sbjct: 98 EAKELHDAMKGLGTKEGVIIEILASRTKNQLREI 131
>pdb|1W45|A Chain A, The 2.5 Angstroem Structure Of The K16a Mutant Of Annexin
A8, Which Has An Intact N-Terminus.
pdb|1W45|B Chain B, The 2.5 Angstroem Structure Of The K16a Mutant Of Annexin
A8, Which Has An Intact N-Terminus
Length = 327
Score = 31.6 bits (70), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 52/94 (55%), Gaps = 11/94 (11%)
Query: 32 IINSIT--TNNERKPIS-AFEARVS--LVFALASQTSSLSQRLLMDLATETAKYVFPKRF 86
II+ +T +N +R+ I+ +F+A+ L L S+ S +RL++ L P R+
Sbjct: 44 IIDVLTKRSNTQRQQIAKSFKAQFGKDLTETLKSELSGKFERLIVALMYP------PYRY 97
Query: 87 ESQNLEEALMAVPDLETVKFKVLSRRGQYEIREV 120
E++ L +A+ + E V ++L+ R + ++RE+
Sbjct: 98 EAKELHDAMKGLGTKEGVIIEILASRTKNQLREI 131
>pdb|4AYZ|A Chain A, X-Ray Structure Of Human Soul
Length = 208
Score = 30.8 bits (68), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 72/178 (40%), Gaps = 20/178 (11%)
Query: 113 GQYEIREVESYFIAETMMPGRTGFDFNGASRS-FNVLAEYLFGKNTKRETMEMTTPVITR 171
G YEIR Y A+ + D++ A ++ F L Y+ GKN K ++ T PV +
Sbjct: 39 GSYEIRH---YGPAKWVSTSVESXDWDSAIQTGFTKLNSYIQGKNEKEXKIKXTAPVTSY 95
Query: 172 KTQSDGEKMEMTTPVISKKLEDQDKWQMSFVMPSKYGANLPLPKDPSVRIKEXXXXXXXX 231
G E T +S +PS+ + P P + V I++
Sbjct: 96 VEPGSGPFSESTI-------------TISLYIPSEQQFDPPRPLESDVFIEDRAEXTVFV 142
Query: 232 XXFSGFVTDEDVKRRELKLRDALKGDRQFRVKEGASVEVAQYNPPFTLPFTRRNEIAL 289
F GF + + + + L L L+ D +V + A YN P L R NE+ L
Sbjct: 143 RSFDGFSSAQKNQEQLLTLASILREDG--KVFDEKVYYTAGYNSPVKL-LNRNNEVWL 197
>pdb|4AYZ|B Chain B, X-Ray Structure Of Human Soul
Length = 208
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 73/178 (41%), Gaps = 20/178 (11%)
Query: 113 GQYEIREVESYFIAETMMPGRTGFDFNGASRS-FNVLAEYLFGKNTKRETMEMTTPVITR 171
G YEIR Y A+ + D++ A ++ F L Y+ GKN K ++ T PV +
Sbjct: 39 GSYEIRH---YGPAKWVSTSVESXDWDSAIQTGFTKLNSYIQGKNEKEXKIKXTAPVTSY 95
Query: 172 KTQSDGEKMEMTTPVISKKLEDQDKWQMSFVMPSKYGANLPLPKDPSVRIKEXXXXXXXX 231
G E +T I S +PS+ + P P + V I++
Sbjct: 96 VEPGSG-PFESSTITI------------SLYIPSEQQFDPPRPLESDVFIEDRAEXTVFV 142
Query: 232 XXFSGFVTDEDVKRRELKLRDALKGDRQFRVKEGASVEVAQYNPPFTLPFTRRNEIAL 289
F GF + + + + L L L+ D +V + A YN P L R NE+ L
Sbjct: 143 RSFDGFSSAQKNQEQLLTLASILREDG--KVFDEKVYYTAGYNSPVKL-LNRNNEVWL 197
>pdb|1G9J|A Chain A, X-Tal Structure Of The Mutant E44q Of The Cellulase Cel48f
In Complex With A Thiooligosaccharide
Length = 629
Score = 28.5 bits (62), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 36/89 (40%), Gaps = 11/89 (12%)
Query: 74 ATETAKYVFPKRFES----------QNLEEALMAVPDLETVKFKVLSRRGQYEIREVESY 123
A+ A V+ RFES E + +ET+ + G E SY
Sbjct: 1 ASSPANKVYQDRFESMYSKIKDPANGYFSEQGIPYHSIETLMVQA-PDYGHVTTSEAMSY 59
Query: 124 FIAETMMPGRTGFDFNGASRSFNVLAEYL 152
++ M GR DF G +S++V +YL
Sbjct: 60 YMWLEAMHGRFSGDFTGFDKSWSVTEQYL 88
>pdb|1F9O|A Chain A, Crystal Structure Of The Cellulase Cel48f From C.
Cellulolyticum With The Thiooligosaccharide Inhibitor
Pips- Ig3
pdb|1FAE|A Chain A, Crystal Structure Of The Cellulase Cel48f From C.
Cellulolyticum In Complex With Cellobiose
pdb|1FBO|A Chain A, Crystal Structure Of The Cellulase Cel48f From C.
Cellulolyticum In Complex With Cellobiitol
pdb|1G9G|A Chain A, Xtal-Structure Of The Free Native Cellulase Cel48f
pdb|1FCE|A Chain A, Processive Endocellulase Celf Of Clostridium
Cellulolyticum
Length = 629
Score = 28.5 bits (62), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 20/40 (50%)
Query: 113 GQYEIREVESYFIAETMMPGRTGFDFNGASRSFNVLAEYL 152
G E SY++ M GR DF G +S++V +YL
Sbjct: 49 GHVTTSEAMSYYMWLEAMHGRFSGDFTGFDKSWSVTEQYL 88
>pdb|3Q7J|A Chain A, Engineered Thermoplasma Acidophilum F3 Factor Mimics Human
Aminopeptidase N (Apn) As A Target For Anticancer Drug
Development
pdb|3Q7J|B Chain B, Engineered Thermoplasma Acidophilum F3 Factor Mimics Human
Aminopeptidase N (Apn) As A Target For Anticancer Drug
Development
Length = 780
Score = 27.7 bits (60), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Query: 130 MPGRTGFDFNGASRSFNVLAEYLFGKNTKRETMEMTTPVI 169
+PGR F F R ++ Y G T T+EM PVI
Sbjct: 696 LPGRE-FIFANLDRIIRLVIRYFTGNRTASRTVEMMIPVI 734
>pdb|1Z1W|A Chain A, Crystal Structures Of The Tricorn Interacting Facor F3
From Thermoplasma Acidophilum, A Zinc Aminopeptidase In
Three Different Conformations
pdb|1Z5H|A Chain A, Crystal Structures Of The Tricorn Interacting Factor F3
From Thermoplasma Acidophilum
pdb|1Z5H|B Chain B, Crystal Structures Of The Tricorn Interacting Factor F3
From Thermoplasma Acidophilum
Length = 780
Score = 27.7 bits (60), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Query: 130 MPGRTGFDFNGASRSFNVLAEYLFGKNTKRETMEMTTPVI 169
+PGR F F R ++ Y G T T+EM PVI
Sbjct: 696 LPGRE-FIFANLDRIIRLVIRYFTGNRTASRTVEMMIPVI 734
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.131 0.361
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,921,966
Number of Sequences: 62578
Number of extensions: 247076
Number of successful extensions: 689
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 680
Number of HSP's gapped (non-prelim): 16
length of query: 296
length of database: 14,973,337
effective HSP length: 98
effective length of query: 198
effective length of database: 8,840,693
effective search space: 1750457214
effective search space used: 1750457214
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)