Query 022505
Match_columns 296
No_of_seqs 133 out of 480
Neff 5.5
Searched_HMMs 29240
Date Mon Mar 25 06:34:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022505.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022505hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2gov_A P22HBP, heme-binding pr 100.0 2.7E-53 9.3E-58 377.3 17.1 177 98-292 15-195 (195)
2 3r8j_A Heme-binding protein 2; 100.0 4.3E-53 1.5E-57 380.8 18.4 179 98-294 20-202 (212)
3 4b0y_A Heme-binding protein 2; 100.0 5.4E-53 1.8E-57 383.7 19.0 182 95-294 35-221 (227)
4 1jyh_A DNA gyrase inhibitory p 98.2 2.6E-05 8.8E-10 61.8 12.6 153 114-295 2-156 (157)
5 3e0h_A Uncharacterized protein 98.2 7.9E-05 2.7E-09 61.2 15.1 148 114-293 8-157 (158)
6 1r8e_A Multidrug-efflux transp 96.5 0.098 3.4E-06 46.6 15.6 151 113-292 122-277 (278)
7 3b49_A LIN2189 protein; BIG 86 96.2 0.11 3.8E-06 44.9 13.8 165 114-292 24-211 (211)
8 3lur_A Putative bacterial tran 91.7 1.4 4.6E-05 35.9 10.0 73 217-293 85-158 (158)
9 1d5y_A ROB transcription facto 89.2 1.5 5.1E-05 38.7 8.7 73 217-294 210-288 (292)
10 3gk6_A Integron cassette prote 85.8 10 0.00035 31.3 11.5 66 217-292 103-170 (170)
11 3e0h_A Uncharacterized protein 81.3 7.5 0.00026 30.9 8.5 70 218-293 8-79 (158)
12 3b49_A LIN2189 protein; BIG 86 70.3 24 0.00082 29.9 9.2 43 217-259 23-71 (211)
13 1jyh_A DNA gyrase inhibitory p 66.9 33 0.0011 25.7 8.6 70 218-292 2-72 (157)
14 1r8e_A Multidrug-efflux transp 54.7 17 0.00057 31.9 5.3 73 216-293 121-196 (278)
15 2dix_A Interferon-inducible do 26.3 1.4E+02 0.0048 21.8 5.7 63 91-157 14-83 (84)
16 2q3l_A Uncharacterized protein 24.6 1.1E+02 0.0037 23.9 5.0 42 218-259 10-51 (126)
17 1d5y_A ROB transcription facto 24.5 2.9E+02 0.01 23.5 8.4 58 217-277 124-185 (292)
18 2ook_A Hypothetical protein; s 24.5 1.5E+02 0.0051 23.1 5.9 43 218-260 10-54 (127)
No 1
>2gov_A P22HBP, heme-binding protein 1; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; NMR {Mus musculus} SCOP: d.60.1.4 PDB: 4a1m_A 2hva_A
Probab=100.00 E-value=2.7e-53 Score=377.31 Aligned_cols=177 Identities=28% Similarity=0.390 Sum_probs=159.5
Q ss_pred CCCcCCCCeEEEEecCC----eEEEEeCCceEEEEEcCCCCCcCcchhhHHHHHHHHhhccCCCCCcccCCCcceEEEee
Q 022505 98 VPDLETVKFKVLSRRGQ----YEIREVESYFIAETMMPGRTGFDFNGASRSFNVLAEYLFGKNTKRETMEMTTPVITRKT 173 (296)
Q Consensus 98 ~~~~EcP~Y~Vl~~~~~----yEiR~Y~~~~wasT~v~g~s~~~~~a~~~gF~~L~~YI~G~N~~~~kI~MTaPV~t~~~ 173 (296)
|++.|||+|+||++.++ ||||+|+++.||+|++.+.+. .+|...||++|++||+|+|.++++|+||+||++++.
T Consensus 15 ~~~~E~P~Y~Vl~~~~~~~~~yEiR~Y~~~~wa~t~~~~~~~--~~A~~~gF~~L~~YI~G~N~~~~kI~MTaPV~~~~~ 92 (195)
T 2gov_A 15 FGSVETWPWQVLSTGGKEDVSYEERACEGGKFATVEVTDKPV--DEALREAMPKIMKYVGGTNDKGVGMGMTVPVSFAVF 92 (195)
T ss_dssp CCSCCSCCCEEEEECCCSSSCEEEEECCCCEEEEEEEESSCH--HHHHHHHHHHHHHHHHTCBTTCCCCCCCCCEEEEEE
T ss_pred cCCCCCCCeEEEEecCCCCCcEEEEEeCCeEEEEEEecCCCh--hHHHHHHHHHHHHHhccCCCCCCCcccccCEEEEEc
Confidence 67899999999999887 999999999999999976432 246678999999999999999999999999999876
Q ss_pred cCCCcccccccccccccccCCCeEEEEEEeecCCCCCCCCCCCCCeEEEEecCeEEEEEEeCCcCChHHHHHHHHHHHHH
Q 022505 174 QSDGEKMEMTTPVISKKLEDQDKWQMSFVMPSKYGANLPLPKDPSVRIKEVPKKVVAVVAFSGFVTDEDVKRRELKLRDA 253 (296)
Q Consensus 174 ~~~g~ki~mT~Pv~~~~~~~~~~~tmsF~LP~~yq~~pP~P~d~~V~I~~~P~~~vaV~~FsG~~t~~~~~~~~~~L~~~ 253 (296)
++++ |. |++.|+|+|+||++||++||+|+|++|+|+++|+++|||++|+|++++.++.+++++|+++
T Consensus 93 p~~~-------~~------~~~~~tvsF~lP~~~~~~pP~P~d~~V~i~~~p~~~vav~~F~G~~~~~~~~~~~~~L~~~ 159 (195)
T 2gov_A 93 PNED-------GS------LQKKLKVWFRIPNQFQGSPPAPSDESVKIEEREGITVYSTQFGGYAKEADYVAHATQLRTT 159 (195)
T ss_dssp ECTT-------SC------EEEEEEEEECCCHHHHHSCCCBCSSSCEEEECCSCEEEEEEEESCCCHHHHHHHHHHHHHH
T ss_pred CCCC-------CC------cCceEEEEEEcchhcccCCCCCCCCceEEEEeCCeEEEEEEECCccCHHHHHHHHHHHHHH
Confidence 6543 32 3568999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCcceecCCcEEEEEeCCCCCCCCCCceeEEEEee
Q 022505 254 LKGDRQFRVKEGASVEVAQYNPPFTLPFTRRNEIALEVE 292 (296)
Q Consensus 254 L~~~g~~~v~~~~~~~~A~YdpP~tlp~~RrNEVwi~v~ 292 (296)
|+++|+. ..++.|++|+||+||++ ++|||||||..+
T Consensus 160 L~~~g~~--~~~~~~~~a~Yn~P~~~-~~RrNEV~i~~~ 195 (195)
T 2gov_A 160 LEGTPAT--YQGDVYYCAGYDPPMKP-YGRRNEVWLVKA 195 (195)
T ss_dssp TTTSSCC--EEEEEEEEEESSCCSSS-SCCEEEEEEEEC
T ss_pred HHHCCCc--ccCCcEEEEEeCCCCCc-CCceeEEEEEeC
Confidence 9999975 24567899999999998 999999999863
No 2
>3r8j_A Heme-binding protein 2; HEBP family, SOUL protein, apoptosis; 1.60A {Homo sapiens} PDB: 3r8k_A 2yc9_A 4ayz_A 4ayz_B 3r85_E
Probab=100.00 E-value=4.3e-53 Score=380.82 Aligned_cols=179 Identities=26% Similarity=0.379 Sum_probs=160.6
Q ss_pred CCCcCCCCeEEEEe----cCCeEEEEeCCceEEEEEcCCCCCcCcchhhHHHHHHHHhhccCCCCCcccCCCcceEEEee
Q 022505 98 VPDLETVKFKVLSR----RGQYEIREVESYFIAETMMPGRTGFDFNGASRSFNVLAEYLFGKNTKRETMEMTTPVITRKT 173 (296)
Q Consensus 98 ~~~~EcP~Y~Vl~~----~~~yEiR~Y~~~~wasT~v~g~s~~~~~a~~~gF~~L~~YI~G~N~~~~kI~MTaPV~t~~~ 173 (296)
++++|||+|+||++ .++||||+|+++.||+|++.+.+. .+|...||++|++||+|+|.++++|+||+||++++.
T Consensus 20 ~~~~E~P~Y~vl~~~~~~~~~yEiR~Y~~~~wast~v~~~~~--~~A~~~gF~~L~~YI~G~N~~~~kI~MTaPV~t~~~ 97 (212)
T 3r8j_A 20 AQAVETPGWKAPEDAGPQPGSYEIRHYGPAKWVSTSVESMDW--DSAIQTGFTKLNSYIQGKNEKEMKIKMTAPVTSYVE 97 (212)
T ss_dssp --CCBCCCEECCSSCCCCCTTCEEEEECCEEEEEEEEEESCH--HHHHHHHHHHHHHHHTTCBTTCCCCCCBSCEEEEEE
T ss_pred cCCCCCCCeEEEEecccCCCCEEEEEcCCceEEEEEEeCCCH--HHHHHHHHHHHHHHhhcCCCCCCccccccCEEEEEe
Confidence 56899999999999 899999999999999999976321 135678999999999999999999999999999987
Q ss_pred cCCCcccccccccccccccCCCeEEEEEEeecCCCCCCCCCCCCCeEEEEecCeEEEEEEeCCcCChHHHHHHHHHHHHH
Q 022505 174 QSDGEKMEMTTPVISKKLEDQDKWQMSFVMPSKYGANLPLPKDPSVRIKEVPKKVVAVVAFSGFVTDEDVKRRELKLRDA 253 (296)
Q Consensus 174 ~~~g~ki~mT~Pv~~~~~~~~~~~tmsF~LP~~yq~~pP~P~d~~V~I~~~P~~~vaV~~FsG~~t~~~~~~~~~~L~~~ 253 (296)
++++ |. +++.|+|+|+||.+||++||+|+|++|+|+++|+++|||++|+|+++++++.+++++|+++
T Consensus 98 p~~~-------~~------~~~~~tvsF~lP~~~q~~pP~P~d~~V~i~~~p~~~vav~~F~G~~~~~~~~~~~~~L~~~ 164 (212)
T 3r8j_A 98 PGSG-------PF------SESTITISLYIPSEQQFDPPRPLESDVFIEDRAEMTVFVRSFDGFSSAQKNQEQLLTLASI 164 (212)
T ss_dssp CTTS-------TT------SCEEEEEEEECCHHHHSSCCCBSSTTEEEEEECCEEEEEEEESSCCCHHHHHHHHHHHHHH
T ss_pred cCCC-------cc------cCceEEEEEEcChHHccCCCCCCCCceEEEEeCCEEEEEEEeCCcCCHHHHHHHHHHHHHH
Confidence 7654 33 3679999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCcceecCCcEEEEEeCCCCCCCCCCceeEEEEeecc
Q 022505 254 LKGDRQFRVKEGASVEVAQYNPPFTLPFTRRNEIALEVERK 294 (296)
Q Consensus 254 L~~~g~~~v~~~~~~~~A~YdpP~tlp~~RrNEVwi~v~~~ 294 (296)
|+++|+. ..++.|++|+||+||++ |+|||||||.++.+
T Consensus 165 L~~~g~~--~~~~~y~~A~Yd~P~t~-~~RrNEVwi~~~~e 202 (212)
T 3r8j_A 165 LREDGKV--FDEKVYYTAGYNSPVKL-LNRNNEVWLIQKNE 202 (212)
T ss_dssp HHHTTCC--BCSSCEEEEESSSSSCC-SSSCEEEEEEBCC-
T ss_pred HHhCCCc--cCCCcEEEEEeCCCCCc-CCceeEEEEEeCCC
Confidence 9999974 25677899999999997 99999999998853
No 3
>4b0y_A Heme-binding protein 2; apoptosis; 3.50A {Homo sapiens}
Probab=100.00 E-value=5.4e-53 Score=383.66 Aligned_cols=182 Identities=26% Similarity=0.366 Sum_probs=154.5
Q ss_pred hhc-CCCcCCCCeEEEEe----cCCeEEEEeCCceEEEEEcCCCCCcCcchhhHHHHHHHHhhccCCCCCcccCCCcceE
Q 022505 95 LMA-VPDLETVKFKVLSR----RGQYEIREVESYFIAETMMPGRTGFDFNGASRSFNVLAEYLFGKNTKRETMEMTTPVI 169 (296)
Q Consensus 95 ~~~-~~~~EcP~Y~Vl~~----~~~yEiR~Y~~~~wasT~v~g~s~~~~~a~~~gF~~L~~YI~G~N~~~~kI~MTaPV~ 169 (296)
+.+ +++.|||+|+||++ .++||||+|+++.||+|++.+.+. .+|...||++|++||+|+|.++++|+||+||+
T Consensus 35 ~~~~~~~~E~P~Y~vl~~~~~~~~~yEiR~Y~~~~wast~v~~~~~--~~A~~~gF~~L~~YI~G~N~~~~kI~MTaPV~ 112 (227)
T 4b0y_A 35 EDAAAQAVETPGWKAPEDAGPQPGSYEIRHYGPAKWVSTSVESMDW--DSAIQTGFTKLNSYIQGKNEKEMKIKMTAPVT 112 (227)
T ss_dssp ------CCBCCCEECCC------CCSEEEEECCEEEEEEEEEESCH--HHHHHHHHHHHHHHHHTCBTTCCCCCCBSCEE
T ss_pred cccccCCCCCCCeEEEEecccCCCCEEEEEcCCceEEEEEEeCCCH--HHHHHHHHHHHHHHhhcCCCCCCccccccCEE
Confidence 445 68999999999999 899999999999999999976321 13567899999999999999999999999999
Q ss_pred EEeecCCCcccccccccccccccCCCeEEEEEEeecCCCCCCCCCCCCCeEEEEecCeEEEEEEeCCcCChHHHHHHHHH
Q 022505 170 TRKTQSDGEKMEMTTPVISKKLEDQDKWQMSFVMPSKYGANLPLPKDPSVRIKEVPKKVVAVVAFSGFVTDEDVKRRELK 249 (296)
Q Consensus 170 t~~~~~~g~ki~mT~Pv~~~~~~~~~~~tmsF~LP~~yq~~pP~P~d~~V~I~~~P~~~vaV~~FsG~~t~~~~~~~~~~ 249 (296)
+++.++++ |. +++.|+|+|+||.+||++||+|+|++|+|+++|+++|||++|+|+++++++.+++++
T Consensus 113 t~~~p~~~-------~~------~~~~~tvsF~lP~~~q~~pP~P~D~~V~i~~~p~~~vaVr~FsG~~~~~~~~~~~~~ 179 (227)
T 4b0y_A 113 SYVEPGSG-------PF------SESTITISLYIPSEQQFDPPRPLESDVFIEDRAEMTVFVRSFDGFSSAQKNQEQLLT 179 (227)
T ss_dssp EEEECCC---------C------CCEEEEEEEECCGGGSSSCCCBSSSSEEEEEECCEEEEEEEESSCCCHHHHHHHHHH
T ss_pred EEEecCCC-------cc------cCceEEEEEEcChhhccCCCCCCCCceEEEEeCCEEEEEEEecCcCCHHHHHHHHHH
Confidence 99877654 33 367999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCcceecCCcEEEEEeCCCCCCCCCCceeEEEEeecc
Q 022505 250 LRDALKGDRQFRVKEGASVEVAQYNPPFTLPFTRRNEIALEVERK 294 (296)
Q Consensus 250 L~~~L~~~g~~~v~~~~~~~~A~YdpP~tlp~~RrNEVwi~v~~~ 294 (296)
|+++|+++|+. ..++.|++|+||+||++ |+|||||||.++.+
T Consensus 180 L~~~L~~~g~~--~~~~~y~~A~Yd~P~t~-~~RrNEVwi~~~~e 221 (227)
T 4b0y_A 180 LASILREDGKV--FDEKVYYTAGYNSPVKL-LNRNNEVWLIQKNE 221 (227)
T ss_dssp HHHHHHHHTCC--BCSSCEEEEECC---CC-CSSCEEEEEEBC--
T ss_pred HHHHHHhCCCc--cCCCcEEEEEeCCCCCc-CCceeEEEEEECCC
Confidence 99999999974 25677899999999997 99999999998754
No 4
>1jyh_A DNA gyrase inhibitory protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; HET: DNA; 1.80A {Escherichia coli} SCOP: d.60.1.3
Probab=98.20 E-value=2.6e-05 Score=61.75 Aligned_cols=153 Identities=16% Similarity=0.133 Sum_probs=98.2
Q ss_pred CeEEEEeCCceEEEEEcCCCCCcCcchhhHHHHHHHHhhccCCCCCcccCCCcceEEEeecCCCcccccccccccccccC
Q 022505 114 QYEIREVESYFIAETMMPGRTGFDFNGASRSFNVLAEYLFGKNTKRETMEMTTPVITRKTQSDGEKMEMTTPVISKKLED 193 (296)
Q Consensus 114 ~yEiR~Y~~~~wasT~v~g~s~~~~~a~~~gF~~L~~YI~G~N~~~~kI~MTaPV~t~~~~~~g~ki~mT~Pv~~~~~~~ 193 (296)
+++|+.+++...+.....|.. + +.....|.+|++++...|-.. .+.+.... .+ |..+. ..
T Consensus 2 ~~~i~~~~~~~v~~~~~~g~~--~-~~i~~~~~~l~~~~~~~~~~~------~~~~gi~~-~~--------~~~~~--~~ 61 (157)
T 1jyh_A 2 NYEIKQEEKRTVAGFHLVGPW--E-QTVKKGFEQLMMWVDSKNIVP------KEWVAVYY-DN--------PDETP--AE 61 (157)
T ss_dssp CCEEEEECCEEEEEEEEESCH--H-HHHHHHHHHHHHHHHHTTCCC------SEEEEEEC-SC--------TTTSC--GG
T ss_pred CCEEEEeCCeEEEEEEEECCc--h-hhHHHHHHHHHHHHHHcCCCC------CcEEEEEC-CC--------CCCCC--HH
Confidence 478999999999888776521 1 123578999999997655321 24432211 11 11110 01
Q ss_pred CCeEEEEEEeecCCCCCCCCCCCCCeEEEEecCeEEEEEEeCCcCChHHHHHHHHHHH-HHHhcCCCcceecCCcEEEEE
Q 022505 194 QDKWQMSFVMPSKYGANLPLPKDPSVRIKEVPKKVVAVVAFSGFVTDEDVKRRELKLR-DALKGDRQFRVKEGASVEVAQ 272 (296)
Q Consensus 194 ~~~~tmsF~LP~~yq~~pP~P~d~~V~I~~~P~~~vaV~~FsG~~t~~~~~~~~~~L~-~~L~~~g~~~v~~~~~~~~A~ 272 (296)
.-.+.+++.+|.... +| |.++.+.+.++|+.++||..|.|... .+.+.-.+|. +||.++|+. ..+.+.+-.
T Consensus 62 ~~~~~~~~~v~~~~~--~~-~~~~~~~~~~ip~g~ya~~~~~G~~~--~~~~~~~~l~~~wl~~~g~~---~~~~~~~E~ 133 (157)
T 1jyh_A 62 KLRCDTVVTVPGYFT--LP-ENSEGVILTEITGGQYAVAVARVVGD--DFAKPWYQFFNSLLQDSAYE---MLPKPCFEV 133 (157)
T ss_dssp GCEEEEEEEECTTCC--CC-SSCTTCEEEEECCEEEEEEEEEECSS--CCHHHHHHHHHHHTTCSSEE---ECSSCEEEE
T ss_pred HheEEEEEEecCccc--cC-CCCCCeEEEEeCCCcEEEEEEEeCHH--HHHHHHHHHHHHhhcccCCc---cCCCceEEE
Confidence 236778888886543 22 44678999999999999999999763 3667777785 999999852 233345566
Q ss_pred eC-CCCCCCCCCceeEEEEeeccC
Q 022505 273 YN-PPFTLPFTRRNEIALEVERKE 295 (296)
Q Consensus 273 Yd-pP~tlp~~RrNEVwi~v~~~~ 295 (296)
|. .|.. +-..+.||||+|+.++
T Consensus 134 Y~~~~~~-~~~~~tei~ipi~~~~ 156 (157)
T 1jyh_A 134 YLNNGAE-DGYWDIEMYVAVQPKH 156 (157)
T ss_dssp ECSCHHH-HSSEEEEEEEEEEEC-
T ss_pred ecCCCCC-cccEEEEEEEEeeeCC
Confidence 72 3333 3456779999998764
No 5
>3e0h_A Uncharacterized protein; chlorobium tepidum, structural genomics, PSI-2, protein structure initiative; 1.81A {Chlorobaculum tepidum} PDB: 2kcu_A
Probab=98.15 E-value=7.9e-05 Score=61.16 Aligned_cols=148 Identities=11% Similarity=0.075 Sum_probs=97.9
Q ss_pred CeEEEEeCCceEEEEEcCCCCCcCcc-hhhHHHHHHHHhhccCCCCCcccCCCcceEEEeecCCCccccccccccccccc
Q 022505 114 QYEIREVESYFIAETMMPGRTGFDFN-GASRSFNVLAEYLFGKNTKRETMEMTTPVITRKTQSDGEKMEMTTPVISKKLE 192 (296)
Q Consensus 114 ~yEiR~Y~~~~wasT~v~g~s~~~~~-a~~~gF~~L~~YI~G~N~~~~kI~MTaPV~t~~~~~~g~ki~mT~Pv~~~~~~ 192 (296)
+++|+..++...|.....+.. .+.. ...+.|.+|+.++..+|- ..+.|.+......+.
T Consensus 8 ~v~I~~~p~~~va~ir~~~~~-~~~~~~i~~~~~~l~~~~~~~~l-----~~~g~~~~iy~d~~~--------------- 66 (158)
T 3e0h_A 8 VCELKELAPVPALLIRTQTTM-SELGSLFEAGYHDILQLLAGQGK-----SPSGPPFARYFGMSA--------------- 66 (158)
T ss_dssp CEEEEEECCCEEEEEEEEECH-HHHHHHHHHHHHHHHHHHHHTTC-----CCSSCCEEEEESCTT---------------
T ss_pred ccEEEeeCCceEEEEEeecCH-HHHHHHHHHHHHHHHHHHHHcCC-----CCCCCeEEEEecCCC---------------
Confidence 678999999999888766531 1111 113568899999876542 335555544332110
Q ss_pred CCCeEEEEEEeecCCCCCCCCCCCCCeEEEEecCeEEEEEEeCCcCChHHHHHHHHHHHHHHhcCCCcceecCCcEEEEE
Q 022505 193 DQDKWQMSFVMPSKYGANLPLPKDPSVRIKEVPKKVVAVVAFSGFVTDEDVKRRELKLRDALKGDRQFRVKEGASVEVAQ 272 (296)
Q Consensus 193 ~~~~~tmsF~LP~~yq~~pP~P~d~~V~I~~~P~~~vaV~~FsG~~t~~~~~~~~~~L~~~L~~~g~~~v~~~~~~~~A~ 272 (296)
.+-.+.+++-++.. .+.+..|.+..+|+.++|+..+.|-..+ +.+.-++|.+||.++|+. . . +..+-..
T Consensus 67 ~~~~~~~~~~v~~~------~~~~~~~~~~~ip~g~~a~~~~~G~~~~--i~~~~~~l~~wl~~~g~~-~-~-~~~~E~Y 135 (158)
T 3e0h_A 67 GTFEVEFGFPVEGG------VEGSGRVVTGLTPSGKAASSLYIGPYGE--IEAVYDALMKWVDDNGFD-L-S-GEAYEIY 135 (158)
T ss_dssp SCEEEEEEEECCSC------CCCBTTBEEEECCCEEEEEEEEESCGGG--THHHHHHHHHHHHHTTCC-E-E-EEEEEEE
T ss_pred cceEEEEEEEeCCC------CCCCCceEEEEeCCEEEEEEEEEcCccc--HHHHHHHHHHHHHHCCCC-c-C-CCEEEEE
Confidence 12244555555432 1234689999999999999999997653 788888999999999964 2 2 3444444
Q ss_pred eCCCCC-CCCCCceeEEEEeec
Q 022505 273 YNPPFT-LPFTRRNEIALEVER 293 (296)
Q Consensus 273 YdpP~t-lp~~RrNEVwi~v~~ 293 (296)
+|.|.. .+-..+.||||+|+.
T Consensus 136 ~~~p~~~~~~~~~tei~ipv~~ 157 (158)
T 3e0h_A 136 LDNPAETAPDQLRTRVSLMLHE 157 (158)
T ss_dssp CSCTTSSCGGGCEEEEEEEECC
T ss_pred eCCCCCCCHHHhEEEEEEEEcC
Confidence 577764 445779999999974
No 6
>1r8e_A Multidrug-efflux transporter regulator; protein-DNA complex, MERR-family transcription activator, MU binding protein; HET: P4P; 2.40A {Bacillus subtilis} SCOP: a.6.1.3 d.60.1.1 PDB: 1exi_A* 1exj_A* 3iao_A 3q5p_A* 3d71_A* 3q3d_A* 3q1m_A* 3q2y_A* 3q5r_A* 3q5s_A* 3d70_A 3d6z_A* 3d6y_A* 1bow_A 2bow_A*
Probab=96.48 E-value=0.098 Score=46.61 Aligned_cols=151 Identities=14% Similarity=0.062 Sum_probs=92.3
Q ss_pred CCeEEEEeCCceEEEEEc-CCCCCcCcchh-hHHHHHHHHhhccCCCCCcccCCCcceEEEeecCCCccccccccccccc
Q 022505 113 GQYEIREVESYFIAETMM-PGRTGFDFNGA-SRSFNVLAEYLFGKNTKRETMEMTTPVITRKTQSDGEKMEMTTPVISKK 190 (296)
Q Consensus 113 ~~yEiR~Y~~~~wasT~v-~g~s~~~~~a~-~~gF~~L~~YI~G~N~~~~kI~MTaPV~t~~~~~~g~ki~mT~Pv~~~~ 190 (296)
.+++|+..++...+.... .+. .... ...|.+|..++...+ +..+.|+.......+ ++ + .
T Consensus 122 ~~v~I~~~p~~~v~~~~~~~~~----~~~i~~~~~~~l~~~~~~~~-----l~~~~~~g~~~~~~~-----~~-~----~ 182 (278)
T 1r8e_A 122 GEVFVLDEEEIRIIQTEAEGIG----PENVLNASYSKLKKFIESAD-----GFTNNSYGATFSFQP-----YT-S----I 182 (278)
T ss_dssp TCCEEEEECCEEEEEEECTTCC----TTTCCGGGGHHHHHHHHHHH-----SSCCCCEEEEECCCC-----CS-C----G
T ss_pred CceEEEEcCCeEEEEeecCCCC----hHhHHHHHHHHHHHHHHHcC-----CcccCceEEEEEhHH-----hh-c----C
Confidence 468899999998887765 331 1222 467899999995543 334557654432211 00 0 0
Q ss_pred ccCCCeE-EEEEEeecCCCCCCCCCCCCCeEEEEecCeEEEEEEeCCcCChHHHHHHHHHHHHHHhcCCCcceecCCcEE
Q 022505 191 LEDQDKW-QMSFVMPSKYGANLPLPKDPSVRIKEVPKKVVAVVAFSGFVTDEDVKRRELKLRDALKGDRQFRVKEGASVE 269 (296)
Q Consensus 191 ~~~~~~~-tmsF~LP~~yq~~pP~P~d~~V~I~~~P~~~vaV~~FsG~~t~~~~~~~~~~L~~~L~~~g~~~v~~~~~~~ 269 (296)
....| .+++.++... .|.|.+..|.+..+|+..+++..+.|.. +.+.+....|.+||.++|+. + .+..+
T Consensus 183 --~~~~~~~~~v~v~~~~---~~l~~~~~~~~~~lp~g~ya~~~~~G~y--~~i~~~~~~l~~wl~~~g~~-~--~g~~~ 252 (278)
T 1r8e_A 183 --DEMTYRHIFTPVLTNK---QISSITPDMEITTIPKGRYACIAYNFSP--EHYFLNLQKLIKYIADRQLT-V--VSDVY 252 (278)
T ss_dssp --GGCCCSEEEEECCCCS---CCSSCCTTSEEEEECSEEEEEEEEECCH--HHHHHHHHHHHHHHHHTTCC-E--EEEEE
T ss_pred --CCcceeEEEEEecCcc---ccccccCCceEeecCCceEEEEEEEcch--hhHHHHHHHHHHHHHHcCCc-c--CCCeE
Confidence 01112 2344443321 1123456799999999999999999955 45677788899999999963 2 23344
Q ss_pred EEEeCCCCCC--CCCCceeEEEEee
Q 022505 270 VAQYNPPFTL--PFTRRNEIALEVE 292 (296)
Q Consensus 270 ~A~YdpP~tl--p~~RrNEVwi~v~ 292 (296)
--.++.|+.. +-.-.-||||+|+
T Consensus 253 E~y~~~~~~~~~~~~~~teI~iPv~ 277 (278)
T 1r8e_A 253 ELIIPIHYSPKKQEEYRVEMKIRIA 277 (278)
T ss_dssp EEEEESCCCSSSCCCEEEEEEEEEC
T ss_pred EEEeecccccCChhheEEEEEEEec
Confidence 4445566543 2244679999986
No 7
>3b49_A LIN2189 protein; BIG 860.1, structural genomics, MCSG, SAD, PSI-2, protein ST initiative, midwest center for structural genomics; HET: MSE; 1.60A {Listeria innocua CLIP11262}
Probab=96.19 E-value=0.11 Score=44.86 Aligned_cols=165 Identities=10% Similarity=0.013 Sum_probs=96.7
Q ss_pred CeEEEEeCCceEEEEEcCCCCCcCcchhhHHHHHHHHhh------ccCCCCCcc-cCCC-cceEEEeecCCCcccccccc
Q 022505 114 QYEIREVESYFIAETMMPGRTGFDFNGASRSFNVLAEYL------FGKNTKRET-MEMT-TPVITRKTQSDGEKMEMTTP 185 (296)
Q Consensus 114 ~yEiR~Y~~~~wasT~v~g~s~~~~~a~~~gF~~L~~YI------~G~N~~~~k-I~MT-aPV~t~~~~~~g~ki~mT~P 185 (296)
+++|+.-++...+.....|... + ....++|.+|+..+ ..++-.... -..+ .|...-....+ |
T Consensus 24 ~v~i~~~p~~~v~~i~~~g~~~-~-~~~~~~~~~L~~~~~~ik~~~~~~~~~~g~~~y~v~~~~gi~~~d~--------~ 93 (211)
T 3b49_A 24 KPERIFVPEMNFLMVDGKGDPD-G-EEYQKAVQSLYAIAYTIKMSKMGETRLDGYSDFVVPPLEGFWWSEG--------K 93 (211)
T ss_dssp SCEEEEEEEEEEEEEEEESCTT-S-HHHHHHHHHHHHHHHHHHHGGGSCCTTTTSCCBCCCCCEEEEEESS--------S
T ss_pred CcEEEEECCeeEEEEEeecCCC-H-HHHHHHHHHHHHHHHHHHHHHhcCCCCCCccceeccceeEEeecCC--------c
Confidence 5788888998888887666321 1 13457899999987 433321111 1112 23332221111 1
Q ss_pred cccccccCCCeEEEEEEeecCCCC------------CCCCCCCCCeEEEEecCeEEEEEEeCCcCChHHHHHHHHHHHHH
Q 022505 186 VISKKLEDQDKWQMSFVMPSKYGA------------NLPLPKDPSVRIKEVPKKVVAVVAFSGFVTDEDVKRRELKLRDA 253 (296)
Q Consensus 186 v~~~~~~~~~~~tmsF~LP~~yq~------------~pP~P~d~~V~I~~~P~~~vaV~~FsG~~t~~~~~~~~~~L~~~ 253 (296)
...+ ...+-.|.+++-+|...+. ..|.+....|.+.++|+..+++..+.|-.. .+.+-..+|.+|
T Consensus 94 ~~~~-~~~~~~~~~~i~vp~~v~~~~~~~a~~~~~~~~~~~~~~~v~~~~ip~g~~a~~~h~G~y~--~~~~~~~~l~~w 170 (211)
T 3b49_A 94 FDLK-DRDAWLWTSILRQPDFVTEEVLEWAKEVARKKKPDVDTSRVKLVRFEEGECVQMMHVGPFS--EEVHTVAEMHQF 170 (211)
T ss_dssp CCTT-CGGGEEEEEEEEECTTCCHHHHHHHHHHHHHHCTTSCCTTCEEEEEEEEEEEEEEEESCGG--GHHHHHHHHHHH
T ss_pred cccC-chhheEEEEEEEcCCcccHHHHHHHHHHHhccCCCCCcccceEEEeCCceEEEEEEEcchh--hHHHHHHHHHHH
Confidence 1100 0012367777877864321 023333467999999999999999999765 366777888899
Q ss_pred HhcCCCcceec--CCcEEEEEeCCCCCC-CCCCceeEEEEee
Q 022505 254 LKGDRQFRVKE--GASVEVAQYNPPFTL-PFTRRNEIALEVE 292 (296)
Q Consensus 254 L~~~g~~~v~~--~~~~~~A~YdpP~tl-p~~RrNEVwi~v~ 292 (296)
|.++|+.. .. ++..+--.+|.|... +-.-+-||+++|+
T Consensus 171 l~~~g~~~-~~~~~~~~~EiY~~dp~~~~~~~~~tei~ipV~ 211 (211)
T 3b49_A 171 METEGLRN-DTGAIRKHHEIYLSDPRKANPEKMKTILRLPVS 211 (211)
T ss_dssp HHHHTCCB-CBTTTBCEEEEECSCTTTSCGGGCEEEEEEEBC
T ss_pred HHHCCCcc-ccCCCCcEEEEEeCCCCCCChHHeEEEEEEEeC
Confidence 99999721 12 144444445777543 2233679999874
No 8
>3lur_A Putative bacterial transcription regulation prote; structural genomics, joint center for structural genomics; HET: MSE PG4; 1.81A {Staphylococcus aureus}
Probab=91.68 E-value=1.4 Score=35.85 Aligned_cols=73 Identities=12% Similarity=0.023 Sum_probs=50.6
Q ss_pred CCeEEEEecCeEEEEEEeCCcCChHHHHHHHHHHH-HHHhcCCCcceecCCcEEEEEeCCCCCCCCCCceeEEEEeec
Q 022505 217 PSVRIKEVPKKVVAVVAFSGFVTDEDVKRRELKLR-DALKGDRQFRVKEGASVEVAQYNPPFTLPFTRRNEIALEVER 293 (296)
Q Consensus 217 ~~V~I~~~P~~~vaV~~FsG~~t~~~~~~~~~~L~-~~L~~~g~~~v~~~~~~~~A~YdpP~tlp~~RrNEVwi~v~~ 293 (296)
..+...++|+.++||.++.|-..+ .+.+--..+. +||-+.|.. ....+.+-.|+.....+-.-.-||||+|++
T Consensus 85 ~~~~~~~ip~g~Yavf~~~G~~~~-~i~~~~~~i~~~wlp~sgy~---~~~~p~fE~Y~~~~~~~~~~~~ei~iPI~~ 158 (158)
T 3lur_A 85 AKYDVITLASSKYMVFEAQGAVPK-AVQQKMEEVHHYIHQYQANT---VKSAPFFELYQDGDTTSEKYITEIWMPVKG 158 (158)
T ss_dssp GGSEEEEECCEEEEEEEEESSTTH-HHHHHHHHHHHHHHHHCTTT---BCSSCEEEEECSSCTTSTTCEEEEEEEECC
T ss_pred CCcEEEEECCceEEEEEEecChHH-HHHHHHHHHHHhhcccCCCe---eCCCccEEEECCCCCCCcceEEEEEEEEcC
Confidence 468889999999999999996544 4555555555 589888863 223345667765433223456799999974
No 9
>1d5y_A ROB transcription factor; protein-DNA complex, DNA, transcription/DNA complex; HET: DNA; 2.70A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 d.60.1.2
Probab=89.16 E-value=1.5 Score=38.70 Aligned_cols=73 Identities=11% Similarity=0.097 Sum_probs=49.2
Q ss_pred CCeEEEEecCeEEEEEEeCCcCChHHHHHHHHHHH-HHHhcCCCcceecCCcEEEEEeC----CCCCCC-CCCceeEEEE
Q 022505 217 PSVRIKEVPKKVVAVVAFSGFVTDEDVKRRELKLR-DALKGDRQFRVKEGASVEVAQYN----PPFTLP-FTRRNEIALE 290 (296)
Q Consensus 217 ~~V~I~~~P~~~vaV~~FsG~~t~~~~~~~~~~L~-~~L~~~g~~~v~~~~~~~~A~Yd----pP~tlp-~~RrNEVwi~ 290 (296)
..+...++|+.++||..+.|- .+.+.+--..|. +||.+.|.. . .++ +.+-.|. ++.... -.-.-||||+
T Consensus 210 ~~~~~~~iP~g~yAvf~~~G~--~~~l~~~~~~i~~~Wlp~sgy~-~-~~~-p~~E~Y~~~~~~~~~~~~~~~~tEI~iP 284 (292)
T 1d5y_A 210 LTGHPVMLQGGEYVMFTYEGL--GTGVQEFILTVYGTCMPMLNLT-R-RKG-QDIERYYPAEDAKAGDRPINLRCELLIP 284 (292)
T ss_dssp TTCEEEEECCEEEEEEEEEEE--GGGHHHHHHHHHHTHHHHTTCE-E-CSS-CEEEEECGGGC----CCSCEEEEEEEEE
T ss_pred CcceEEEECCCcEEEEEecCC--HHHHHHHHHHHHHHhcccCCCc-c-CCC-CcEEEEeeccccCCCCCCCceEEEEEEE
Confidence 468899999999999999994 456788888886 999999963 1 222 2334454 333221 1224599999
Q ss_pred eecc
Q 022505 291 VERK 294 (296)
Q Consensus 291 v~~~ 294 (296)
|+.+
T Consensus 285 I~~k 288 (292)
T 1d5y_A 285 IRRK 288 (292)
T ss_dssp EECC
T ss_pred eehh
Confidence 9865
No 10
>3gk6_A Integron cassette protein VCH_CASS2; novel, oyster PO HOLE, USA, structural genomics, PSI-2; HET: MSE PE4; 1.80A {Vibrio cholerae}
Probab=85.82 E-value=10 Score=31.31 Aligned_cols=66 Identities=11% Similarity=0.088 Sum_probs=46.8
Q ss_pred CCeEEEEecCeEEEEEEeCCcCChHHHHHHHHHHHHHHhcCC--CcceecCCcEEEEEeCCCCCCCCCCceeEEEEee
Q 022505 217 PSVRIKEVPKKVVAVVAFSGFVTDEDVKRRELKLRDALKGDR--QFRVKEGASVEVAQYNPPFTLPFTRRNEIALEVE 292 (296)
Q Consensus 217 ~~V~I~~~P~~~vaV~~FsG~~t~~~~~~~~~~L~~~L~~~g--~~~v~~~~~~~~A~YdpP~tlp~~RrNEVwi~v~ 292 (296)
..+...++|+.++||-++.|-.. +.+++--+.+..||-+.| .. ....+-+-.|+... .-||||+|+
T Consensus 103 ~g~~~~~IP~g~YAVF~~~G~~p-~~i~~~w~~I~~WlP~sg~~y~---~~~~pdfE~Y~~~~------~~eI~IpI~ 170 (170)
T 3gk6_A 103 SESVKTKVSSGKYVTFSATGEMP-QVVIDLWNEVWNYFASEHCPHK---RAYTTDFEYYKSAN------TVEISIAVR 170 (170)
T ss_dssp TTCEEEEECCEEEEEEEEESSTT-HHHHHHHHHHHHHHC---CCCC---BCCSEEEEECCSSS------EEEEEEEBC
T ss_pred CCcEEEEECCCCEEEEEecCCCH-HHHHHHHHHHHHhhhhcCCcce---ecCcCCEEEECCCC------eEEEEEEEC
Confidence 57888999999999999999554 467777777777999988 42 23345666776531 679999985
No 11
>3e0h_A Uncharacterized protein; chlorobium tepidum, structural genomics, PSI-2, protein structure initiative; 1.81A {Chlorobaculum tepidum} PDB: 2kcu_A
Probab=81.28 E-value=7.5 Score=30.86 Aligned_cols=70 Identities=11% Similarity=0.082 Sum_probs=47.7
Q ss_pred CeEEEEecCeEEEEEEeCCcCCh--HHHHHHHHHHHHHHhcCCCcceecCCcEEEEEeCCCCCCCCCCceeEEEEeec
Q 022505 218 SVRIKEVPKKVVAVVAFSGFVTD--EDVKRRELKLRDALKGDRQFRVKEGASVEVAQYNPPFTLPFTRRNEIALEVER 293 (296)
Q Consensus 218 ~V~I~~~P~~~vaV~~FsG~~t~--~~~~~~~~~L~~~L~~~g~~~v~~~~~~~~A~YdpP~tlp~~RrNEVwi~v~~ 293 (296)
+|+|+++|+.+|+.++..|...+ ..+.+.-.+|.+++..+|+. ..+..+...|| +.. -.=+-|+.++|..
T Consensus 8 ~v~I~~~p~~~va~ir~~~~~~~~~~~i~~~~~~l~~~~~~~~l~---~~g~~~~iy~d--~~~-~~~~~~~~~~v~~ 79 (158)
T 3e0h_A 8 VCELKELAPVPALLIRTQTTMSELGSLFEAGYHDILQLLAGQGKS---PSGPPFARYFG--MSA-GTFEVEFGFPVEG 79 (158)
T ss_dssp CEEEEEECCCEEEEEEEEECHHHHHHHHHHHHHHHHHHHHHTTCC---CSSCCEEEEES--CTT-SCEEEEEEEECCS
T ss_pred ccEEEeeCCceEEEEEeecCHHHHHHHHHHHHHHHHHHHHHcCCC---CCCCeEEEEec--CCC-cceEEEEEEEeCC
Confidence 68999999999999999997532 23456677899999999863 23444444555 222 2345677777754
No 12
>3b49_A LIN2189 protein; BIG 860.1, structural genomics, MCSG, SAD, PSI-2, protein ST initiative, midwest center for structural genomics; HET: MSE; 1.60A {Listeria innocua CLIP11262}
Probab=70.35 E-value=24 Score=29.88 Aligned_cols=43 Identities=16% Similarity=0.021 Sum_probs=37.1
Q ss_pred CCeEEEEecCeEEEEEEeCCcCChHHHHHHHHHHHHHH------hcCCC
Q 022505 217 PSVRIKEVPKKVVAVVAFSGFVTDEDVKRRELKLRDAL------KGDRQ 259 (296)
Q Consensus 217 ~~V~I~~~P~~~vaV~~FsG~~t~~~~~~~~~~L~~~L------~~~g~ 259 (296)
-+|.|.++|+..++.++..|-+.+..+.+...+|..++ .++|+
T Consensus 23 ~~v~i~~~p~~~v~~i~~~g~~~~~~~~~~~~~L~~~~~~ik~~~~~~~ 71 (211)
T 3b49_A 23 RKPERIFVPEMNFLMVDGKGDPDGEEYQKAVQSLYAIAYTIKMSKMGET 71 (211)
T ss_dssp SSCEEEEEEEEEEEEEEEESCTTSHHHHHHHHHHHHHHHHHHHGGGSCC
T ss_pred CCcEEEEECCeeEEEEEeecCCCHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 46899999999999999888766557889999999999 88875
No 13
>1jyh_A DNA gyrase inhibitory protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; HET: DNA; 1.80A {Escherichia coli} SCOP: d.60.1.3
Probab=66.89 E-value=33 Score=25.73 Aligned_cols=70 Identities=20% Similarity=0.173 Sum_probs=46.7
Q ss_pred CeEEEEecCeEEEEEEeCCcCChHHHHHHHHHHHHHHhcCCCcceecCCcEEEEEeCCCCCCC-CCCceeEEEEee
Q 022505 218 SVRIKEVPKKVVAVVAFSGFVTDEDVKRRELKLRDALKGDRQFRVKEGASVEVAQYNPPFTLP-FTRRNEIALEVE 292 (296)
Q Consensus 218 ~V~I~~~P~~~vaV~~FsG~~t~~~~~~~~~~L~~~L~~~g~~~v~~~~~~~~A~YdpP~tlp-~~RrNEVwi~v~ 292 (296)
+|.|++.|+..++..+..|-. ++.+.+.-++|.+++..+|+. . ...+...||.|...+ -.=+-++.+.+.
T Consensus 2 ~~~i~~~~~~~v~~~~~~g~~-~~~i~~~~~~l~~~~~~~~~~---~-~~~~gi~~~~~~~~~~~~~~~~~~~~v~ 72 (157)
T 1jyh_A 2 NYEIKQEEKRTVAGFHLVGPW-EQTVKKGFEQLMMWVDSKNIV---P-KEWVAVYYDNPDETPAEKLRCDTVVTVP 72 (157)
T ss_dssp CCEEEEECCEEEEEEEEESCH-HHHHHHHHHHHHHHHHHTTCC---C-SEEEEEECSCTTTSCGGGCEEEEEEEEC
T ss_pred CCEEEEeCCeEEEEEEEECCc-hhhHHHHHHHHHHHHHHcCCC---C-CcEEEEECCCCCCCCHHHheEEEEEEec
Confidence 478999999999988888754 245677778899999888863 2 234445567776321 122445666664
No 14
>1r8e_A Multidrug-efflux transporter regulator; protein-DNA complex, MERR-family transcription activator, MU binding protein; HET: P4P; 2.40A {Bacillus subtilis} SCOP: a.6.1.3 d.60.1.1 PDB: 1exi_A* 1exj_A* 3iao_A 3q5p_A* 3d71_A* 3q3d_A* 3q1m_A* 3q2y_A* 3q5r_A* 3q5s_A* 3d70_A 3d6z_A* 3d6y_A* 1bow_A 2bow_A*
Probab=54.73 E-value=17 Score=31.88 Aligned_cols=73 Identities=15% Similarity=-0.000 Sum_probs=46.5
Q ss_pred CCCeEEEEecCeEEEEEEe-CCcCChHHH-HHHHHHHHHHHhcCCCcceecCCcEEEEEeCCCCCCCCCCce-eEEEEee
Q 022505 216 DPSVRIKEVPKKVVAVVAF-SGFVTDEDV-KRRELKLRDALKGDRQFRVKEGASVEVAQYNPPFTLPFTRRN-EIALEVE 292 (296)
Q Consensus 216 d~~V~I~~~P~~~vaV~~F-sG~~t~~~~-~~~~~~L~~~L~~~g~~~v~~~~~~~~A~YdpP~tlp~~RrN-EVwi~v~ 292 (296)
..+|.|+++|+..++..+. .|.. ..+ .+...+|.+++.++|.. ..+.+.+..+|++++..-.++. ++.+.+.
T Consensus 121 ~~~v~I~~~p~~~v~~~~~~~~~~--~~i~~~~~~~l~~~~~~~~l~---~~~~~g~~~~~~~~~~~~~~~~~~~~v~v~ 195 (278)
T 1r8e_A 121 LGEVFVLDEEEIRIIQTEAEGIGP--ENVLNASYSKLKKFIESADGF---TNNSYGATFSFQPYTSIDEMTYRHIFTPVL 195 (278)
T ss_dssp TTCCEEEEECCEEEEEEECTTCCT--TTCCGGGGHHHHHHHHHHHSS---CCCCEEEEECCCCCSCGGGCCCSEEEEECC
T ss_pred CCceEEEEcCCeEEEEeecCCCCh--HhHHHHHHHHHHHHHHHcCCc---ccCceEEEEEhHHhhcCCCcceeEEEEEec
Confidence 3569999999999998888 5533 222 34456788888888753 2344444445566664323333 6888775
Q ss_pred c
Q 022505 293 R 293 (296)
Q Consensus 293 ~ 293 (296)
.
T Consensus 196 ~ 196 (278)
T 1r8e_A 196 T 196 (278)
T ss_dssp C
T ss_pred C
Confidence 4
No 15
>2dix_A Interferon-inducible double stranded RNA- dependent protein kinase activator A; structure genomics, DSRM domain, hypothetical protein PRKRA; NMR {Homo sapiens} SCOP: d.50.1.1
Probab=26.33 E-value=1.4e+02 Score=21.76 Aligned_cols=63 Identities=14% Similarity=0.115 Sum_probs=36.2
Q ss_pred hHHHhhcCCCcCCCCeEEEEec-----CCeEEEEeCCceEEEEEcCCCCCcC--cchhhHHHHHHHHhhccCCC
Q 022505 91 LEEALMAVPDLETVKFKVLSRR-----GQYEIREVESYFIAETMMPGRTGFD--FNGASRSFNVLAEYLFGKNT 157 (296)
Q Consensus 91 ~~~~~~~~~~~EcP~Y~Vl~~~-----~~yEiR~Y~~~~wasT~v~g~s~~~--~~a~~~gF~~L~~YI~G~N~ 157 (296)
|-|-+.... ..|.|+++... ..|.++-+=...+. ...|.+-.. -.|+..++..|..+.+|.+.
T Consensus 14 LqE~~q~~~--~~p~Y~~~~~~Gp~h~~~F~~~v~v~~~~~--~G~G~SKK~Aeq~AA~~aL~~L~~~~~g~s~ 83 (84)
T 2dix_A 14 LHEYGMKTK--NIPVYECERSDVQIHVPTFTFRVTVGDITC--TGEGTSKKLAKHRAAEAAINILKANASGPSS 83 (84)
T ss_dssp HHHHHHHTT--CCCEEEEEEEECSSSSCEEEEEEEETTEEE--EECSSCTTHHHHHHHHHHHHHHHHTCCCCCC
T ss_pred HHHHHHHcC--CCCeEEEEEeECCCCCCeEEEEEEECCEEE--EeeeCCHHHHHHHHHHHHHHHHhccccCCCC
Confidence 445444443 47999998753 23666665444333 333433211 12456789999988888653
No 16
>2q3l_A Uncharacterized protein; SPOIIAA-like fold, structural genomics, joint center for STR genomics, JCSG, protein structure initiative; HET: MSE; 2.25A {Shewanella loihica pv-4} SCOP: c.13.2.2
Probab=24.64 E-value=1.1e+02 Score=23.95 Aligned_cols=42 Identities=21% Similarity=0.248 Sum_probs=36.5
Q ss_pred CeEEEEecCeEEEEEEeCCcCChHHHHHHHHHHHHHHhcCCC
Q 022505 218 SVRIKEVPKKVVAVVAFSGFVTDEDVKRRELKLRDALKGDRQ 259 (296)
Q Consensus 218 ~V~I~~~P~~~vaV~~FsG~~t~~~~~~~~~~L~~~L~~~g~ 259 (296)
.+.|....+..+.+.+.+|..+.+++++-...|.+.|++.+.
T Consensus 10 mi~i~~~~~~~vl~v~~~G~lt~~d~~~l~~~l~~~l~~~~~ 51 (126)
T 2q3l_A 10 AIGIERSQDDFYLAFKAVGKLTHEDYEQMTPLLESALAGIKT 51 (126)
T ss_dssp EEEEEEETTEEEEEEEEEEEECHHHHHHHHHHHHHHTTTCCS
T ss_pred eEEEEEcCCCCEEEEEEEeeECHHHHHHHHHHHHHHHHhCCC
Confidence 467777788889999999999999999988888888988875
No 17
>1d5y_A ROB transcription factor; protein-DNA complex, DNA, transcription/DNA complex; HET: DNA; 2.70A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 d.60.1.2
Probab=24.48 E-value=2.9e+02 Score=23.53 Aligned_cols=58 Identities=10% Similarity=0.039 Sum_probs=37.4
Q ss_pred CCeEEEEecCeEEEEEEeCCcCChHHHH----HHHHHHHHHHhcCCCcceecCCcEEEEEeCCCC
Q 022505 217 PSVRIKEVPKKVVAVVAFSGFVTDEDVK----RRELKLRDALKGDRQFRVKEGASVEVAQYNPPF 277 (296)
Q Consensus 217 ~~V~I~~~P~~~vaV~~FsG~~t~~~~~----~~~~~L~~~L~~~g~~~v~~~~~~~~A~YdpP~ 277 (296)
.+|.|++.|+..|+.++..|...++.+. ....+|.+.+...+.. ..+..+...||.|-
T Consensus 124 m~~~I~~~~~~~v~gi~~~~~~~~~~~~~~~~~~i~~lw~~~~~~~~~---~~~~~~gi~~d~~~ 185 (292)
T 1d5y_A 124 PEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPT---IPPVLYGLNETRPS 185 (292)
T ss_dssp CCEEEEEECCEEEEEEEEECCCCGGGHHHHHHHHHHHHHHHHHHHCSS---CCSCEEEEEEEEEC
T ss_pred CCceEEEeCCeEEeeEEeeeccccccccccchhhhHHHHHHHhcccCC---CCCCEEEEEecCCC
Confidence 4689999999999999999866543332 4455666666554321 23345556666664
No 18
>2ook_A Hypothetical protein; structural genomics, JOIN for structural genomics, JCSG, protein structure initiative unknown function; HET: MSE; 1.80A {Shewanella frigidimarina} SCOP: c.13.2.2
Probab=24.46 E-value=1.5e+02 Score=23.13 Aligned_cols=43 Identities=21% Similarity=0.201 Sum_probs=36.3
Q ss_pred CeEEEEecCeEEEEEEeCCcCChHHHHHHHHHHHHHHhc--CCCc
Q 022505 218 SVRIKEVPKKVVAVVAFSGFVTDEDVKRRELKLRDALKG--DRQF 260 (296)
Q Consensus 218 ~V~I~~~P~~~vaV~~FsG~~t~~~~~~~~~~L~~~L~~--~g~~ 260 (296)
.+.|....+..+.+.+.+|..+.+++++-...|.+.|++ .+..
T Consensus 10 mi~i~~~~~~~vl~v~~~G~lt~eD~~~l~~~i~~~l~~~~~~~i 54 (127)
T 2ook_A 10 SIGINRIESVFFVTLKAIGTLTHEDYLVITPMLEGALSQVDQPKV 54 (127)
T ss_dssp EEEEEEETTEEEEEEEEEEEECHHHHHHHHHHHHHHHTTCCCSSC
T ss_pred eEEEEEcCCCCEEEEEEeeeECHHHHHHHHHHHHHHHhhccCCCE
Confidence 366777778888999999999999999988888889998 7753
Done!