Query 022507
Match_columns 296
No_of_seqs 145 out of 1378
Neff 9.7
Searched_HMMs 13730
Date Mon Mar 25 06:37:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022507.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/022507hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1u7ga_ f.44.1.1 (A:) Ammonium 39.1 89 0.0065 25.0 18.0 76 98-175 249-326 (383)
2 d2e74g1 f.23.26.1 (G:9-35) Pet 32.4 22 0.0016 16.1 2.9 18 131-148 3-20 (27)
3 d1iwga8 f.35.1.1 (A:513-566,A: 17.6 1.7E+02 0.012 20.9 9.9 30 242-272 96-125 (222)
4 d1pw4a_ f.38.1.1 (A:) Glycerol 14.3 2.5E+02 0.018 21.3 11.3 27 130-157 60-86 (447)
5 d1kqfb2 f.23.22.1 (B:246-290) 14.2 41 0.003 17.9 1.5 28 250-278 7-34 (45)
6 d1pw4a_ f.38.1.1 (A:) Glycerol 13.1 2.7E+02 0.019 21.1 11.9 15 88-102 193-207 (447)
7 d2r6gf1 e.70.1.1 (F:13-260) Ma 10.5 3E+02 0.022 20.1 6.5 54 53-110 4-57 (248)
8 d1fftb2 f.17.2.1 (B:27-117) Cy 6.9 31 0.0022 21.4 -0.9 14 267-280 31-44 (91)
9 d1iwga7 f.35.1.1 (A:7-37,A:331 6.9 3.7E+02 0.027 18.4 7.4 49 225-274 61-109 (199)
10 d3dtub2 f.17.2.1 (B:30-129) Ba 5.9 2.5E+02 0.018 17.0 3.4 29 261-289 36-64 (100)
No 1
>d1u7ga_ f.44.1.1 (A:) Ammonium transporter AmtB {Escherichia coli [TaxId: 562]}
Probab=39.06 E-value=89 Score=24.97 Aligned_cols=76 Identities=9% Similarity=-0.067 Sum_probs=33.1
Q ss_pred hcCccCCccchhhhhhhhhhhHhhhcCCcccchh-HHHHHHHHHH-HHHHHHHHHHHhccCCCCCHHHHHHHHhhhHHHH
Q 022507 98 SGKGKPTTQVTLSVLLTATGCVIAALGDFSFDLS-GYSMALTSVF-FQTMYLVLVEKSGAEDGLSSVEIMFYNSFLSLPF 175 (296)
Q Consensus 98 ~~~e~~~~~~~~~i~l~~~Gv~l~~~~~~~~~~~-G~~~~l~s~~-~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~ 175 (296)
+.++|++...... -.+.|.+-++....-.+++ ..+...++++ ++-.+..+.+|..-+...+...+.....+.+.+.
T Consensus 249 ~~~~k~~~~~~~n--G~LaGLVaita~~~~v~p~~A~~iG~i~g~i~~~~~~~l~~~~~iDD~~~~~~vHg~~Gi~G~l~ 326 (383)
T d1u7ga_ 249 ALRGLPSLLGACS--GAIAGLVGVTPACGYIGVGGALIIGVVAGLAGLWGVTMLKRLLRVDDPCDVFGVHGVCGIVGCIM 326 (383)
T ss_dssp HHHSSCCHHHHHH--HHHHHHHHHTTTTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHCSCCGGGHHHHHHHHHHHHHHH
T ss_pred HhcCCCCHHHHHH--HhhhhhhhcccCccccchhhHHHHHhhccHHHHHHHHHHHhhcccccccceEeehhhhHHHHHHH
Confidence 3456666554332 2344665555433333444 3555555444 4444444444442221233444444443333333
No 2
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=32.44 E-value=22 Score=16.07 Aligned_cols=18 Identities=22% Similarity=0.259 Sum_probs=14.5
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 022507 131 SGYSMALTSVFFQTMYLV 148 (296)
Q Consensus 131 ~G~~~~l~s~~~~a~~~v 148 (296)
.|.+.+-++.+++|.|.-
T Consensus 3 lgli~~tl~glf~aayqq 20 (27)
T d2e74g1 3 LGLVFATLGGLFYAAYQQ 20 (27)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred eeehHHHHHHHHHHHHHH
Confidence 577888888999998863
No 3
>d1iwga8 f.35.1.1 (A:513-566,A:869-1036) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=17.56 E-value=1.7e+02 Score=20.93 Aligned_cols=30 Identities=17% Similarity=0.082 Sum_probs=19.6
Q ss_pred HHHHhhheeeCCcccchhhHHHHHHHHHHhH
Q 022507 242 GSTTLGFVVLGGVQVRALNVTGLLINTAGGV 272 (296)
Q Consensus 242 ~~~~~~~~~~~e~~~t~~~~~G~~lil~g~~ 272 (296)
...+.+..+.+ .+++....+|.++.+.-.+
T Consensus 96 ~~~~~~l~~~g-~~~~~~~~~g~i~l~Gi~v 125 (222)
T d1iwga8 96 IGALLAATFRG-LTNDVYFQVGLLTTIGLSA 125 (222)
T ss_dssp HHHHHHHHHTT-CCBCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcC-Cchhhhhcccccchhhhhh
Confidence 34445555666 4899988888888554443
No 4
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=14.26 E-value=2.5e+02 Score=21.35 Aligned_cols=27 Identities=4% Similarity=0.011 Sum_probs=12.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhccCC
Q 022507 130 LSGYSMALTSVFFQTMYLVLVEKSGAED 157 (296)
Q Consensus 130 ~~G~~~~l~s~~~~a~~~v~~k~~~~~~ 157 (296)
..|.+... ..+.+++.....-++.+++
T Consensus 60 ~~g~~~s~-~~~~~~~~~~~~G~l~Dr~ 86 (447)
T d1pw4a_ 60 DLGFALSG-ISIAYGFSKFIMGSVSDRS 86 (447)
T ss_dssp CHHHHHHH-HHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHc
Confidence 35554433 3334444444545555544
No 5
>d1kqfb2 f.23.22.1 (B:246-290) Iron-sulfur subunit of formate dehydrogenase N, transmembrane anchor {Escherichia coli [TaxId: 562]}
Probab=14.21 E-value=41 Score=17.88 Aligned_cols=28 Identities=18% Similarity=0.351 Sum_probs=20.9
Q ss_pred eeCCcccchhhHHHHHHHHHHhHHHHHHH
Q 022507 250 VLGGVQVRALNVTGLLINTAGGVWYSYAK 278 (296)
Q Consensus 250 ~~~e~~~t~~~~~G~~lil~g~~~~~~~~ 278 (296)
++++ ...+...+|+....++.++.....
T Consensus 7 lWKg-v~Kpl~~~~~~~~~~~~~fHYv~v 34 (45)
T d1kqfb2 7 LWKG-ALKPLAAAGFIATFAGLIFHYIGI 34 (45)
T ss_dssp HHHT-THHHHHHHHHHHHHHHHHHHHHHH
T ss_pred Hhhh-hHHHHHHHHHHHHHHHHHHhhhee
Confidence 3455 777888899998888888876543
No 6
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=13.13 E-value=2.7e+02 Score=21.13 Aligned_cols=15 Identities=13% Similarity=0.153 Sum_probs=7.4
Q ss_pred HHHHHHHHHHhcCcc
Q 022507 88 PLAVLVAGFFSGKGK 102 (296)
Q Consensus 88 pv~~~l~~~~~~~e~ 102 (296)
.+...++.+.+.+|+
T Consensus 193 ~~~~~~~~~~~~~~~ 207 (447)
T d1pw4a_ 193 AILVALFAFAMMRDT 207 (447)
T ss_dssp HHHHHHHHHHHCCCS
T ss_pred HHHHHHHHHHhcccc
Confidence 344445555555543
No 7
>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=10.47 E-value=3e+02 Score=20.12 Aligned_cols=54 Identities=9% Similarity=-0.111 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhcccchhHHHHHHhhHHHHHHHHHHHhcCccCCccchhh
Q 022507 53 KLLPVSLFYNANVAFALASLKGVNIPMYIAIKRLTPLAVLVAGFFSGKGKPTTQVTLS 110 (296)
Q Consensus 53 ~~l~~~~~~~~~~~~~~~al~~~~~s~~~~l~~~~pv~~~l~~~~~~~e~~~~~~~~~ 110 (296)
++...|++.++..+........-+...+. ..-+.+.+..++++.+|.-++|++.
T Consensus 4 K~~ll~l~~a~~~~~~~~~~~~~~~~~a~----~~~~~~~~~~~vy~s~r~~p~kyi~ 57 (248)
T d2r6gf1 4 KWSVLGLLGLLVGYLVVLMYAQGEYLFAI----TTLILSSAGLYIFANRKAYAWRYVY 57 (248)
T ss_dssp THHHHHHHHHHHHHTHHHHHGGGCHHHHH----HHHHHHHHHHHHHSSSCCTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcchHHHHH----HHHHHHHheEEEEEccCccceehhh
Confidence 45666777666666555555444444433 2335566777888887777777743
No 8
>d1fftb2 f.17.2.1 (B:27-117) Cytochrome O ubiquinol oxidase, subunit II {Escherichia coli [TaxId: 562]}
Probab=6.94 E-value=31 Score=21.40 Aligned_cols=14 Identities=14% Similarity=-0.273 Sum_probs=6.7
Q ss_pred HHHHhHHHHHHHHh
Q 022507 267 NTAGGVWYSYAKYQ 280 (296)
Q Consensus 267 il~g~~~~~~~~~~ 280 (296)
.+.|...|...|.|
T Consensus 31 ~V~~~~~~~~~ryR 44 (91)
T d1fftb2 31 PAILMAVGFAWKYR 44 (91)
T ss_dssp HHHHHHHTTTTTTT
T ss_pred HHHHHHHhhheeee
Confidence 34445555554444
No 9
>d1iwga7 f.35.1.1 (A:7-37,A:331-498) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=6.92 E-value=3.7e+02 Score=18.45 Aligned_cols=49 Identities=14% Similarity=0.028 Sum_probs=29.2
Q ss_pred hccChhHHHHHhhhhHHHHHHhhheeeCCcccchhhHHHHHHHHHHhHHH
Q 022507 225 IVNSALTTTIVGVLKGVGSTTLGFVVLGGVQVRALNVTGLLINTAGGVWY 274 (296)
Q Consensus 225 ~~~sa~~~s~~~~l~pi~~~~~~~~~~~e~~~t~~~~~G~~lil~g~~~~ 274 (296)
+..-+.........-.+........++| .+++.....+..+.+...+-+
T Consensus 61 rs~~~~li~~~~i~~~i~~~~~~m~~~g-~~l~~~s~~~~~i~igi~vd~ 109 (199)
T d1iwga7 61 QNFRATLIPTIAVPVVLLGTFAVLAAFG-FSINTLTMFGMVLAIGLLVDD 109 (199)
T ss_dssp CCTTTTTHHHHHHHHHHHHHHHHHHTTT-CCSCHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhheeccccchhhHHHHHHhhcCC-CchHHHHHHHHHHHHHHhccc
Confidence 4444444444444444555555556676 488888888888776666544
No 10
>d3dtub2 f.17.2.1 (B:30-129) Bacterial aa3 type cytochrome c oxidase subunit II {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=5.85 E-value=2.5e+02 Score=16.99 Aligned_cols=29 Identities=17% Similarity=0.397 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhHHHHHHHHhhhhccCCcc
Q 022507 261 VTGLLINTAGGVWYSYAKYQQKKKKLPKS 289 (296)
Q Consensus 261 ~~G~~lil~g~~~~~~~~~~~~~~~~~~~ 289 (296)
..++.+.+.+...|...|.++++.+..++
T Consensus 36 ~~~I~~~V~~~l~~~~~~~r~~~~~~~~~ 64 (100)
T d3dtub2 36 IAAITIFVTLLILYAVWRFHEKRNKVPAR 64 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHBTTTCCSCCC
T ss_pred HHHHHHHHHHHHHHHhhhhhccCCCCCcc
Done!