Query 022509
Match_columns 296
No_of_seqs 283 out of 1884
Neff 5.8
Searched_HMMs 46136
Date Fri Mar 29 04:05:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022509.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022509hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4628 Predicted E3 ubiquitin 100.0 6.8E-29 1.5E-33 236.6 13.6 190 1-197 152-342 (348)
2 PF13639 zf-RING_2: Ring finge 99.6 1.3E-15 2.9E-20 104.5 2.5 44 82-126 1-44 (44)
3 COG5540 RING-finger-containing 99.4 1.9E-13 4.1E-18 127.9 4.2 53 79-131 321-373 (374)
4 COG5243 HRD1 HRD ubiquitin lig 99.4 2.8E-12 6.1E-17 122.8 9.9 75 59-137 268-353 (491)
5 PF12678 zf-rbx1: RING-H2 zinc 99.3 1.2E-12 2.6E-17 99.6 3.4 46 80-126 18-73 (73)
6 PHA02929 N1R/p28-like protein; 99.3 2.1E-12 4.5E-17 118.7 4.7 74 57-131 149-228 (238)
7 cd00162 RING RING-finger (Real 99.1 7.3E-11 1.6E-15 78.7 3.7 45 83-129 1-45 (45)
8 PLN03208 E3 ubiquitin-protein 99.1 1.8E-10 3.9E-15 102.6 5.5 55 79-136 16-85 (193)
9 KOG0317 Predicted E3 ubiquitin 99.0 2.5E-10 5.4E-15 106.5 5.5 50 80-133 238-287 (293)
10 KOG0802 E3 ubiquitin ligase [P 99.0 2.6E-10 5.6E-15 116.0 5.7 55 80-135 290-346 (543)
11 PF13923 zf-C3HC4_2: Zinc fing 98.9 5E-10 1.1E-14 74.9 2.6 39 84-125 1-39 (39)
12 PF13920 zf-C3HC4_3: Zinc fing 98.9 5.8E-10 1.3E-14 78.4 3.0 46 81-130 2-48 (50)
13 KOG0823 Predicted E3 ubiquitin 98.9 5.9E-10 1.3E-14 101.3 3.3 56 78-136 44-101 (230)
14 PF12861 zf-Apc11: Anaphase-pr 98.9 8.9E-10 1.9E-14 86.2 3.4 51 80-130 20-82 (85)
15 smart00184 RING Ring finger. E 98.8 2.6E-09 5.6E-14 68.7 3.4 39 84-125 1-39 (39)
16 PF14634 zf-RING_5: zinc-RING 98.8 2.5E-09 5.5E-14 73.5 3.2 44 83-127 1-44 (44)
17 KOG0320 Predicted E3 ubiquitin 98.8 2E-09 4.4E-14 94.4 3.1 52 79-132 129-180 (187)
18 PF00097 zf-C3HC4: Zinc finger 98.8 2.1E-09 4.5E-14 72.2 2.0 40 84-125 1-41 (41)
19 PHA02926 zinc finger-like prot 98.8 3.7E-09 8.1E-14 95.8 3.2 54 78-131 167-231 (242)
20 PF15227 zf-C3HC4_4: zinc fing 98.7 6.3E-09 1.4E-13 71.2 2.5 39 84-125 1-42 (42)
21 smart00504 Ubox Modified RING 98.6 3.5E-08 7.7E-13 71.6 4.1 46 82-131 2-47 (63)
22 KOG0828 Predicted E3 ubiquitin 98.6 5.8E-08 1.2E-12 96.3 5.8 52 80-131 570-635 (636)
23 KOG1734 Predicted RING-contain 98.6 5.3E-08 1.2E-12 90.4 4.2 56 77-132 220-283 (328)
24 COG5194 APC11 Component of SCF 98.5 8.7E-08 1.9E-12 73.9 3.2 50 82-132 21-83 (88)
25 KOG1493 Anaphase-promoting com 98.5 3.3E-08 7.1E-13 75.7 0.9 51 80-130 19-81 (84)
26 TIGR00599 rad18 DNA repair pro 98.5 7.2E-08 1.6E-12 94.7 3.4 50 79-132 24-73 (397)
27 PF13445 zf-RING_UBOX: RING-ty 98.4 1.1E-07 2.4E-12 65.5 2.3 39 84-123 1-43 (43)
28 COG5574 PEX10 RING-finger-cont 98.4 1.2E-07 2.6E-12 87.9 2.7 52 80-134 214-266 (271)
29 smart00744 RINGv The RING-vari 98.3 3.8E-07 8.2E-12 64.4 3.3 43 83-126 1-49 (49)
30 KOG2930 SCF ubiquitin ligase, 98.3 2.9E-07 6.4E-12 74.2 1.3 50 80-130 45-108 (114)
31 COG5219 Uncharacterized conser 98.2 4E-07 8.6E-12 95.9 0.4 55 76-130 1464-1523(1525)
32 TIGR00570 cdk7 CDK-activating 98.2 1.4E-06 3.1E-11 82.8 3.9 53 81-133 3-57 (309)
33 KOG2177 Predicted E3 ubiquitin 98.2 6.4E-07 1.4E-11 79.8 1.3 44 79-126 11-54 (386)
34 PF04564 U-box: U-box domain; 98.1 1.6E-06 3.5E-11 65.7 2.1 49 81-132 4-52 (73)
35 PF11793 FANCL_C: FANCL C-term 98.1 8.5E-07 1.9E-11 67.0 0.5 51 81-131 2-67 (70)
36 KOG4265 Predicted E3 ubiquitin 98.1 2.4E-06 5.1E-11 82.2 3.2 51 79-133 288-339 (349)
37 KOG2164 Predicted E3 ubiquitin 98.1 2E-06 4.4E-11 85.9 2.9 55 81-138 186-244 (513)
38 KOG0804 Cytoplasmic Zn-finger 98.0 1.5E-06 3.3E-11 85.6 1.5 47 81-130 175-222 (493)
39 KOG0287 Postreplication repair 97.8 5.4E-06 1.2E-10 79.4 1.3 48 81-132 23-70 (442)
40 KOG0827 Predicted E3 ubiquitin 97.8 7.4E-06 1.6E-10 79.6 2.1 48 81-129 4-55 (465)
41 COG5432 RAD18 RING-finger-cont 97.8 1.1E-05 2.4E-10 76.0 2.2 46 80-129 24-69 (391)
42 KOG0824 Predicted E3 ubiquitin 97.8 1.1E-05 2.4E-10 76.2 2.1 54 81-137 7-60 (324)
43 KOG4445 Uncharacterized conser 97.6 2.4E-05 5.2E-10 74.0 2.2 56 80-135 114-191 (368)
44 KOG0311 Predicted E3 ubiquitin 97.6 1.2E-05 2.6E-10 77.3 -0.5 58 79-138 41-98 (381)
45 KOG4172 Predicted E3 ubiquitin 97.5 2E-05 4.4E-10 56.9 0.1 48 81-131 7-55 (62)
46 KOG0825 PHD Zn-finger protein 97.5 1.7E-05 3.7E-10 82.7 -0.7 51 80-131 122-172 (1134)
47 KOG1645 RING-finger-containing 97.5 7E-05 1.5E-09 73.4 3.2 48 80-127 3-53 (463)
48 KOG1039 Predicted E3 ubiquitin 97.4 5.4E-05 1.2E-09 73.4 1.9 53 79-131 159-222 (344)
49 KOG3970 Predicted E3 ubiquitin 97.2 0.00026 5.7E-09 64.7 3.1 58 76-134 45-109 (299)
50 KOG1428 Inhibitor of type V ad 97.2 0.00025 5.5E-09 77.9 3.1 66 65-130 3470-3544(3738)
51 KOG1941 Acetylcholine receptor 97.1 0.00022 4.7E-09 69.7 2.2 48 80-127 364-413 (518)
52 KOG1785 Tyrosine kinase negati 97.1 0.00018 3.8E-09 70.5 1.2 50 81-133 369-419 (563)
53 KOG0978 E3 ubiquitin ligase in 97.1 0.00015 3.2E-09 75.7 0.4 50 80-132 642-691 (698)
54 PF14835 zf-RING_6: zf-RING of 97.0 0.00021 4.6E-09 53.3 0.5 46 82-132 8-53 (65)
55 PF11789 zf-Nse: Zinc-finger o 97.0 0.00035 7.5E-09 50.9 1.3 43 80-124 10-53 (57)
56 KOG0801 Predicted E3 ubiquitin 96.9 0.00035 7.6E-09 61.0 1.1 29 80-108 176-204 (205)
57 KOG1571 Predicted E3 ubiquitin 96.8 0.00036 7.9E-09 67.5 0.6 48 77-131 301-348 (355)
58 PF05883 Baculo_RING: Baculovi 96.8 0.00051 1.1E-08 58.2 1.2 36 81-116 26-67 (134)
59 KOG4159 Predicted E3 ubiquitin 96.8 0.00077 1.7E-08 66.7 2.4 49 79-131 82-130 (398)
60 KOG0297 TNF receptor-associate 96.6 0.0013 2.9E-08 64.8 2.8 56 78-136 18-73 (391)
61 PF14570 zf-RING_4: RING/Ubox 96.5 0.0011 2.3E-08 46.8 1.0 45 84-129 1-47 (48)
62 KOG1002 Nucleotide excision re 96.5 0.0011 2.5E-08 67.0 1.6 54 76-132 531-588 (791)
63 KOG1814 Predicted E3 ubiquitin 96.5 0.0019 4.2E-08 63.6 3.0 38 80-117 183-220 (445)
64 PF12906 RINGv: RING-variant d 96.4 0.002 4.3E-08 45.0 2.1 41 84-125 1-47 (47)
65 PF10367 Vps39_2: Vacuolar sor 96.3 0.0018 3.9E-08 51.2 1.3 32 80-112 77-108 (109)
66 PHA02862 5L protein; Provision 96.3 0.0031 6.7E-08 54.2 2.7 50 81-134 2-57 (156)
67 PHA02825 LAP/PHD finger-like p 95.9 0.0069 1.5E-07 52.8 3.3 52 80-135 7-64 (162)
68 KOG4185 Predicted E3 ubiquitin 95.7 0.0059 1.3E-07 57.3 2.2 48 82-129 4-54 (296)
69 KOG2879 Predicted E3 ubiquitin 95.6 0.038 8.3E-07 52.1 7.1 50 80-131 238-288 (298)
70 PHA03096 p28-like protein; Pro 95.5 0.0069 1.5E-07 57.5 1.7 46 82-127 179-231 (284)
71 KOG0827 Predicted E3 ubiquitin 95.4 0.0011 2.3E-08 64.9 -4.0 52 81-133 196-248 (465)
72 COG5236 Uncharacterized conser 95.3 0.012 2.7E-07 57.0 2.9 60 65-128 45-106 (493)
73 KOG1952 Transcription factor N 95.2 0.011 2.4E-07 62.8 2.3 48 80-127 190-244 (950)
74 COG5152 Uncharacterized conser 95.1 0.0072 1.6E-07 54.6 0.6 44 82-129 197-240 (259)
75 KOG3039 Uncharacterized conser 95.1 0.019 4E-07 53.5 3.3 52 81-133 221-273 (303)
76 COG5175 MOT2 Transcriptional r 94.9 0.016 3.5E-07 56.1 2.5 54 80-133 13-67 (480)
77 KOG4739 Uncharacterized protei 94.9 0.013 2.9E-07 54.0 1.7 47 83-133 5-51 (233)
78 KOG0826 Predicted E3 ubiquitin 94.7 0.067 1.5E-06 51.6 6.0 46 79-127 298-343 (357)
79 PF14447 Prok-RING_4: Prokaryo 94.6 0.021 4.4E-07 41.4 1.7 46 82-133 8-53 (55)
80 KOG4275 Predicted E3 ubiquitin 94.6 0.0077 1.7E-07 57.2 -0.6 43 81-131 300-343 (350)
81 COG5222 Uncharacterized conser 94.4 0.035 7.5E-07 53.1 3.2 44 82-127 275-318 (427)
82 KOG2660 Locus-specific chromos 94.3 0.014 3.1E-07 56.1 0.4 50 80-132 14-63 (331)
83 KOG2114 Vacuolar assembly/sort 94.0 0.016 3.4E-07 61.7 0.2 44 81-130 840-883 (933)
84 KOG1813 Predicted E3 ubiquitin 94.0 0.023 5E-07 54.0 1.2 46 81-130 241-286 (313)
85 PF08746 zf-RING-like: RING-li 93.4 0.027 5.9E-07 38.6 0.4 42 84-125 1-43 (43)
86 KOG3268 Predicted E3 ubiquitin 93.3 0.044 9.6E-07 48.8 1.7 34 99-132 187-230 (234)
87 KOG1001 Helicase-like transcri 93.1 0.038 8.3E-07 58.2 1.2 48 82-133 455-503 (674)
88 KOG1940 Zn-finger protein [Gen 92.7 0.053 1.1E-06 51.3 1.4 47 80-127 157-204 (276)
89 PF04641 Rtf2: Rtf2 RING-finge 92.6 0.12 2.6E-06 48.2 3.7 52 79-132 111-163 (260)
90 PF10272 Tmpp129: Putative tra 92.4 0.19 4.2E-06 49.3 4.8 28 102-129 311-350 (358)
91 PF14446 Prok-RING_1: Prokaryo 91.9 0.17 3.7E-06 36.6 2.9 34 80-113 4-38 (54)
92 KOG2034 Vacuolar sorting prote 91.5 0.081 1.8E-06 56.7 1.3 35 80-115 816-850 (911)
93 KOG4692 Predicted E3 ubiquitin 91.5 0.13 2.9E-06 50.2 2.6 49 79-131 420-468 (489)
94 KOG3800 Predicted E3 ubiquitin 91.4 0.16 3.6E-06 48.2 3.0 52 83-134 2-55 (300)
95 KOG3002 Zn finger protein [Gen 90.7 0.14 3E-06 49.1 1.9 44 80-131 47-92 (299)
96 KOG2817 Predicted E3 ubiquitin 90.6 0.66 1.4E-05 45.9 6.5 46 81-126 334-381 (394)
97 KOG2932 E3 ubiquitin ligase in 90.1 0.11 2.4E-06 49.9 0.6 41 82-127 91-131 (389)
98 KOG1100 Predicted E3 ubiquitin 90.1 0.13 2.8E-06 46.7 1.1 40 83-130 160-200 (207)
99 KOG3053 Uncharacterized conser 89.3 0.18 4E-06 47.2 1.4 55 79-133 18-85 (293)
100 KOG0309 Conserved WD40 repeat- 89.1 0.22 4.8E-06 52.8 2.0 25 99-124 1045-1069(1081)
101 COG5220 TFB3 Cdk activating ki 89.0 0.22 4.7E-06 46.4 1.6 48 80-127 9-61 (314)
102 KOG1609 Protein involved in mR 88.9 0.21 4.6E-06 46.6 1.6 52 81-132 78-136 (323)
103 KOG1812 Predicted E3 ubiquitin 87.9 0.59 1.3E-05 46.2 4.0 38 80-117 145-183 (384)
104 PF07800 DUF1644: Protein of u 87.7 0.62 1.3E-05 40.8 3.5 36 81-116 2-47 (162)
105 KOG3161 Predicted E3 ubiquitin 87.0 0.17 3.8E-06 52.7 -0.3 44 81-128 11-55 (861)
106 COG5183 SSM4 Protein involved 86.4 0.57 1.2E-05 50.2 3.1 54 80-134 11-70 (1175)
107 KOG0298 DEAD box-containing he 86.0 0.24 5.2E-06 55.2 0.1 48 79-129 1151-1198(1394)
108 KOG1829 Uncharacterized conser 84.5 0.34 7.4E-06 50.2 0.4 42 80-125 510-556 (580)
109 KOG0802 E3 ubiquitin ligase [P 83.3 0.66 1.4E-05 47.7 1.9 49 79-135 477-525 (543)
110 KOG0825 PHD Zn-finger protein 82.9 0.71 1.5E-05 49.3 2.0 52 80-131 95-155 (1134)
111 smart00249 PHD PHD zinc finger 81.1 0.48 1E-05 31.1 -0.0 31 83-113 1-31 (47)
112 PF01102 Glycophorin_A: Glycop 80.5 2.4 5.3E-05 35.5 4.0 24 16-39 66-89 (122)
113 KOG3899 Uncharacterized conser 80.3 0.97 2.1E-05 43.3 1.7 29 102-130 325-365 (381)
114 PF15050 SCIMP: SCIMP protein 79.7 3.9 8.4E-05 34.4 4.8 13 11-23 6-18 (133)
115 PF13901 DUF4206: Domain of un 79.0 0.9 2E-05 40.9 1.0 42 80-127 151-197 (202)
116 KOG4362 Transcriptional regula 77.2 0.64 1.4E-05 49.0 -0.6 48 81-131 21-70 (684)
117 KOG3005 GIY-YIG type nuclease 74.9 1.4 3.1E-05 41.6 1.2 48 82-129 183-242 (276)
118 PF05290 Baculo_IE-1: Baculovi 74.8 2.2 4.8E-05 36.4 2.2 52 80-131 79-133 (140)
119 PF03854 zf-P11: P-11 zinc fin 74.8 1.5 3.2E-05 31.1 0.9 32 100-132 16-48 (50)
120 KOG4367 Predicted Zn-finger pr 70.9 2.5 5.4E-05 42.7 1.8 35 80-117 3-37 (699)
121 COG5109 Uncharacterized conser 69.9 11 0.00024 36.6 5.9 45 81-125 336-382 (396)
122 KOG2066 Vacuolar assembly/sort 68.9 2.1 4.6E-05 45.8 0.9 43 81-125 784-830 (846)
123 PF15048 OSTbeta: Organic solu 66.3 7.8 0.00017 32.7 3.6 43 3-45 24-66 (125)
124 PF14569 zf-UDP: Zinc-binding 65.7 6.7 0.00015 30.5 2.9 58 80-137 8-69 (80)
125 KOG0269 WD40 repeat-containing 64.9 4.4 9.6E-05 43.3 2.3 41 82-124 780-820 (839)
126 KOG1815 Predicted E3 ubiquitin 64.2 4.1 8.9E-05 40.9 1.9 37 79-117 68-104 (444)
127 KOG0260 RNA polymerase II, lar 64.2 1.3E+02 0.0028 34.5 13.1 14 81-94 1391-1404(1605)
128 PF02891 zf-MIZ: MIZ/SP-RING z 63.1 6.3 0.00014 27.7 2.1 44 82-128 3-50 (50)
129 smart00132 LIM Zinc-binding do 62.8 8.1 0.00018 24.1 2.5 37 83-129 1-37 (39)
130 KOG3113 Uncharacterized conser 62.6 7.3 0.00016 36.8 3.0 51 80-133 110-161 (293)
131 PLN02189 cellulose synthase 62.5 9 0.0002 42.5 4.2 56 80-135 33-92 (1040)
132 PF15102 TMEM154: TMEM154 prot 61.3 3.8 8.2E-05 35.4 0.9 8 110-117 129-136 (146)
133 KOG3579 Predicted E3 ubiquitin 61.2 5 0.00011 38.5 1.7 37 80-117 267-305 (352)
134 PF00628 PHD: PHD-finger; Int 61.2 3.1 6.7E-05 28.5 0.3 45 83-127 1-50 (51)
135 KOG2807 RNA polymerase II tran 61.1 10 0.00022 37.0 3.9 67 60-127 308-375 (378)
136 KOG2071 mRNA cleavage and poly 57.6 5.7 0.00012 41.3 1.6 35 79-114 511-556 (579)
137 PF15050 SCIMP: SCIMP protein 57.0 21 0.00045 30.1 4.5 29 16-44 8-36 (133)
138 PLN02436 cellulose synthase A 56.4 13 0.00029 41.4 4.2 56 80-135 35-94 (1094)
139 PF00558 Vpu: Vpu protein; In 54.5 15 0.00033 28.7 3.2 25 19-43 10-34 (81)
140 PF06679 DUF1180: Protein of u 54.0 19 0.00041 31.7 4.1 28 18-45 95-122 (163)
141 TIGR00622 ssl1 transcription f 54.0 15 0.00033 30.4 3.3 45 81-126 55-110 (112)
142 PF08114 PMP1_2: ATPase proteo 53.3 13 0.00029 25.5 2.3 7 35-41 28-34 (43)
143 PF13717 zinc_ribbon_4: zinc-r 52.6 6.6 0.00014 25.8 0.7 25 83-107 4-36 (36)
144 KOG3842 Adaptor protein Pellin 52.1 16 0.00034 35.7 3.4 54 80-133 340-417 (429)
145 PF14654 Epiglycanin_C: Mucin, 50.2 31 0.00066 28.1 4.3 37 5-41 9-45 (106)
146 KOG4718 Non-SMC (structural ma 48.7 8.3 0.00018 35.5 1.0 42 81-125 181-222 (235)
147 PF04971 Lysis_S: Lysis protei 47.8 23 0.00049 26.9 3.0 34 6-39 25-58 (68)
148 PF02439 Adeno_E3_CR2: Adenovi 47.6 41 0.00089 22.7 3.9 14 24-37 16-29 (38)
149 KOG1729 FYVE finger containing 47.5 3.8 8.2E-05 39.2 -1.4 36 82-117 215-250 (288)
150 PF01102 Glycophorin_A: Glycop 46.5 30 0.00064 29.1 3.9 28 17-44 64-91 (122)
151 PHA02650 hypothetical protein; 46.0 37 0.00079 26.5 4.0 9 12-20 47-55 (81)
152 PF07975 C1_4: TFIIH C1-like d 46.0 10 0.00022 27.1 0.9 42 84-126 2-50 (51)
153 PF06716 DUF1201: Protein of u 45.6 58 0.0012 23.1 4.6 6 35-40 29-34 (54)
154 PF01363 FYVE: FYVE zinc finge 45.0 9.2 0.0002 27.9 0.6 37 80-116 8-45 (69)
155 PF04277 OAD_gamma: Oxaloaceta 44.8 50 0.0011 24.7 4.7 25 14-38 5-29 (79)
156 PF08374 Protocadherin: Protoc 44.8 15 0.00033 33.8 2.0 27 10-36 34-60 (221)
157 KOG1812 Predicted E3 ubiquitin 44.3 11 0.00023 37.5 1.1 45 80-125 305-351 (384)
158 PF04710 Pellino: Pellino; In 43.9 7.6 0.00017 38.7 0.0 47 79-128 275-337 (416)
159 PF14584 DUF4446: Protein of u 43.8 39 0.00084 29.3 4.4 15 77-91 93-107 (151)
160 PF15179 Myc_target_1: Myc tar 43.5 39 0.00085 30.4 4.4 31 7-37 11-41 (197)
161 KOG4185 Predicted E3 ubiquitin 43.0 4 8.7E-05 38.2 -2.0 48 81-128 207-265 (296)
162 PF12877 DUF3827: Domain of un 42.0 24 0.00051 37.4 3.2 30 9-38 265-294 (684)
163 PRK00523 hypothetical protein; 40.9 50 0.0011 25.3 4.0 12 14-25 3-14 (72)
164 PF07191 zinc-ribbons_6: zinc- 40.5 2.7 5.9E-05 32.0 -2.9 41 82-131 2-42 (70)
165 PLN02638 cellulose synthase A 40.4 32 0.00069 38.5 4.0 54 80-133 16-73 (1079)
166 COG3763 Uncharacterized protei 40.2 70 0.0015 24.5 4.6 12 33-44 20-31 (71)
167 KOG3842 Adaptor protein Pellin 40.0 12 0.00027 36.4 0.8 49 80-128 289-350 (429)
168 PF10497 zf-4CXXC_R1: Zinc-fin 39.7 37 0.00079 27.6 3.4 47 80-127 6-69 (105)
169 PF05393 Hum_adeno_E3A: Human 39.1 67 0.0015 25.7 4.6 31 16-46 32-62 (94)
170 PF05715 zf-piccolo: Piccolo Z 38.9 22 0.00047 26.3 1.7 19 119-137 2-20 (61)
171 PF12768 Rax2: Cortical protei 38.9 19 0.00041 34.2 1.8 10 16-25 229-238 (281)
172 PLN02915 cellulose synthase A 38.0 38 0.00082 37.9 4.1 55 80-134 14-72 (1044)
173 PF04423 Rad50_zn_hook: Rad50 37.6 9.4 0.0002 26.9 -0.3 11 121-131 22-32 (54)
174 PF00412 LIM: LIM domain; Int 37.1 24 0.00052 24.3 1.7 39 84-132 1-39 (58)
175 KOG2068 MOT2 transcription fac 36.8 37 0.00081 33.1 3.5 48 82-131 250-299 (327)
176 PF14851 FAM176: FAM176 family 36.8 51 0.0011 28.8 4.0 17 21-37 26-42 (153)
177 PF07649 C1_3: C1-like domain; 36.0 19 0.00042 22.2 1.0 29 83-111 2-30 (30)
178 PF10571 UPF0547: Uncharacteri 35.9 16 0.00035 22.4 0.6 22 83-106 2-24 (26)
179 KOG3726 Uncharacterized conser 35.8 34 0.00074 36.5 3.2 40 82-125 655-695 (717)
180 PF13719 zinc_ribbon_5: zinc-r 35.6 17 0.00038 23.8 0.7 25 83-107 4-36 (37)
181 PLN02400 cellulose synthase 35.2 35 0.00076 38.3 3.3 56 80-135 35-94 (1085)
182 PF07010 Endomucin: Endomucin; 35.0 56 0.0012 30.5 4.1 17 31-47 204-220 (259)
183 PRK14762 membrane protein; Pro 34.5 47 0.001 20.4 2.4 18 13-30 5-22 (27)
184 PF06844 DUF1244: Protein of u 34.3 23 0.0005 26.7 1.3 12 106-117 12-23 (68)
185 PF07406 NICE-3: NICE-3 protei 34.3 49 0.0011 29.7 3.6 11 106-116 124-134 (186)
186 PF11044 TMEMspv1-c74-12: Plec 34.3 66 0.0014 22.5 3.4 30 14-43 4-33 (49)
187 PF06024 DUF912: Nucleopolyhed 34.3 24 0.00053 28.3 1.5 32 13-44 57-88 (101)
188 cd00065 FYVE FYVE domain; Zinc 33.9 29 0.00062 24.1 1.7 36 81-116 2-38 (57)
189 PRK06531 yajC preprotein trans 33.9 21 0.00046 29.5 1.1 9 106-114 74-82 (113)
190 PHA02692 hypothetical protein; 33.8 68 0.0015 24.5 3.7 20 11-30 42-61 (70)
191 PF14979 TMEM52: Transmembrane 33.3 50 0.0011 28.8 3.3 10 14-23 20-29 (154)
192 smart00064 FYVE Protein presen 33.0 34 0.00073 24.8 2.0 36 81-116 10-46 (68)
193 KOG0824 Predicted E3 ubiquitin 32.8 16 0.00035 35.2 0.3 50 80-132 104-153 (324)
194 PLN02195 cellulose synthase A 32.4 57 0.0012 36.3 4.3 52 80-131 5-60 (977)
195 PF07204 Orthoreo_P10: Orthore 32.1 34 0.00074 27.6 2.0 25 12-36 40-64 (98)
196 PHA02844 putative transmembran 31.9 54 0.0012 25.3 2.9 9 12-20 46-54 (75)
197 KOG3039 Uncharacterized conser 31.7 35 0.00077 32.2 2.3 34 80-116 42-75 (303)
198 PF12606 RELT: Tumour necrosis 31.3 59 0.0013 23.1 2.9 17 27-43 14-30 (50)
199 PF13832 zf-HC5HC2H_2: PHD-zin 30.7 30 0.00065 27.5 1.5 32 80-113 54-87 (110)
200 KOG1094 Discoidin domain recep 30.2 69 0.0015 34.2 4.3 8 228-235 596-603 (807)
201 PF10083 DUF2321: Uncharacteri 30.1 29 0.00063 30.4 1.4 47 85-135 8-55 (158)
202 PF04710 Pellino: Pellino; In 29.7 18 0.00038 36.2 0.0 53 80-132 327-403 (416)
203 PHA02975 hypothetical protein; 29.4 93 0.002 23.6 3.8 13 10-22 40-52 (69)
204 PF15176 LRR19-TM: Leucine-ric 28.8 1.3E+02 0.0029 24.5 4.9 16 10-25 13-28 (102)
205 PF04277 OAD_gamma: Oxaloaceta 28.7 1.1E+02 0.0023 22.9 4.2 23 15-37 10-32 (79)
206 COG4847 Uncharacterized protei 28.7 46 0.001 26.9 2.2 35 81-116 6-40 (103)
207 PF15069 FAM163: FAM163 family 28.5 98 0.0021 26.8 4.3 17 19-35 13-29 (143)
208 PHA03054 IMV membrane protein; 28.0 1E+02 0.0022 23.6 3.8 10 11-20 45-54 (72)
209 PF14979 TMEM52: Transmembrane 27.6 99 0.0021 27.0 4.2 18 13-30 22-39 (154)
210 PRK04778 septation ring format 27.3 71 0.0015 33.1 3.9 6 35-40 21-26 (569)
211 PF05605 zf-Di19: Drought indu 26.8 27 0.00059 24.5 0.6 14 81-94 2-15 (54)
212 PHA02819 hypothetical protein; 26.5 96 0.0021 23.7 3.5 9 12-20 44-52 (71)
213 cd00350 rubredoxin_like Rubred 26.5 37 0.0008 21.6 1.1 9 119-127 17-25 (33)
214 PF00130 C1_1: Phorbol esters/ 26.2 30 0.00066 23.7 0.7 34 80-113 10-45 (53)
215 PF07010 Endomucin: Endomucin; 26.0 1E+02 0.0023 28.8 4.3 38 7-44 184-221 (259)
216 PF13314 DUF4083: Domain of un 25.9 96 0.0021 22.8 3.2 6 36-41 26-31 (58)
217 PRK05585 yajC preprotein trans 25.6 50 0.0011 26.9 2.0 8 106-113 89-96 (106)
218 PF10883 DUF2681: Protein of u 23.9 72 0.0016 25.3 2.5 19 27-45 13-31 (87)
219 PF04216 FdhE: Protein involve 23.8 11 0.00024 35.5 -2.5 45 81-127 172-219 (290)
220 PF03229 Alpha_GJ: Alphavirus 23.6 1.3E+02 0.0027 25.3 4.0 27 17-43 86-112 (126)
221 PF05545 FixQ: Cbb3-type cytoc 23.6 1.4E+02 0.003 20.5 3.6 9 30-38 22-30 (49)
222 PF06906 DUF1272: Protein of u 23.4 1.2E+02 0.0025 22.3 3.3 45 82-131 6-53 (57)
223 smart00647 IBR In Between Ring 23.3 10 0.00022 26.7 -2.3 15 101-115 45-59 (64)
224 PF15353 HECA: Headcase protei 23.2 59 0.0013 26.7 1.9 15 102-116 40-54 (107)
225 KOG1815 Predicted E3 ubiquitin 22.8 25 0.00055 35.3 -0.3 36 82-117 227-267 (444)
226 PF15345 TMEM51: Transmembrane 22.5 54 0.0012 30.5 1.8 31 17-47 60-90 (233)
227 COG2991 Uncharacterized protei 22.2 79 0.0017 24.4 2.3 27 17-43 4-30 (77)
228 COG4736 CcoQ Cbb3-type cytochr 21.8 1.3E+02 0.0028 22.2 3.3 17 24-40 16-32 (60)
229 PF02318 FYVE_2: FYVE-type zin 21.4 55 0.0012 26.7 1.5 46 80-127 53-102 (118)
230 KOG4218 Nuclear hormone recept 21.2 70 0.0015 31.7 2.3 48 79-127 13-75 (475)
231 PF01034 Syndecan: Syndecan do 21.0 28 0.00061 26.1 -0.3 6 34-39 30-35 (64)
232 PF04995 CcmD: Heme exporter p 20.7 1.6E+02 0.0034 20.1 3.4 26 18-43 8-33 (46)
233 KOG4323 Polycomb-like PHD Zn-f 20.7 73 0.0016 32.6 2.4 46 80-127 167-223 (464)
234 PF13994 PgaD: PgaD-like prote 20.6 2.5E+02 0.0054 23.5 5.4 21 23-43 70-90 (138)
235 PF02060 ISK_Channel: Slow vol 20.6 1.8E+02 0.004 24.7 4.4 19 17-35 45-63 (129)
236 PF06676 DUF1178: Protein of u 20.6 1E+02 0.0023 26.7 3.0 28 99-131 5-44 (148)
237 KOG3637 Vitronectin receptor, 20.3 86 0.0019 35.2 3.1 25 11-35 976-1000(1030)
238 PRK09174 F0F1 ATP synthase sub 20.3 1.5E+02 0.0033 26.7 4.2 11 6-16 44-54 (204)
239 PRK03564 formate dehydrogenase 20.3 53 0.0011 31.8 1.3 42 80-127 186-234 (309)
No 1
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=6.8e-29 Score=236.63 Aligned_cols=190 Identities=48% Similarity=0.797 Sum_probs=151.0
Q ss_pred CEEEEcC-CCCccchhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccccccccCccHHHHHhCCcceeecccccCC
Q 022509 1 MEIWIIP-SFENSAWSIMAISFISLLAMSAVLATCFFVRRHRIRREAPRASRGREFHGMSRRLVKAMPSLIFTAVVEDNC 79 (296)
Q Consensus 1 ~e~~lip-~~~~s~w~iliI~fi~Ll~i~~vl~i~~~i~r~r~rr~~~~~~~~~~~~~l~~~~i~~lp~~~~~~~~~~~~ 79 (296)
+++|+++ .++...|.++.+.++.++++..+++.++++++++.+.+.+.. ++.+++.++.++++|...|+...+++.
T Consensus 152 ~~~~~~~~~~~~~~ws~~~~~~i~~l~v~~il~~~f~i~~~~~~~~~r~~---~~~~r~~k~~l~~~p~~~f~~~~~~~~ 228 (348)
T KOG4628|consen 152 FECLLIPLGFDTSPWSILAISLISLLTVVAILVTCFFIYRIRRLIRARNR---LRRNRLIKRLLKKLPVRTFTKGDDEDA 228 (348)
T ss_pred eeeeeccccccCCcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhH---hhhhhhHHHHHhhCCcEEeccccccCC
Confidence 5789999 999999999999899999999999888888887765544432 566788999999999999988877765
Q ss_pred CCCccceecccccCCCceEEeCCCCccchhhHHHHHhhCCCCCCccccccCCCCCCCCCCCCCCCCCCCCCCCCcccccc
Q 022509 80 TSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDARTSTGEPPASESTPLLSSSPASSSILSSIR 159 (296)
Q Consensus 80 ~~~~CaICLe~f~~~d~vr~LpCgH~FH~~CId~WL~~~~~tCPlCR~~i~~~~~~~~~~~~tp~~s~s~~~ss~~ss~r 159 (296)
. ..|+||||+|+++|++|+|||+|.||..|||.||.+++..||+||+++....+.++..|.+|..+..++. +..+..+
T Consensus 229 ~-~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~r~~CPvCK~di~~~~~~~~~~e~tp~~~~~~~~-~~~~~~~ 306 (348)
T KOG4628|consen 229 T-DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQTRTFCPVCKRDIRTDSGSEPVSEDTPLLSQGPSS-NSLSNLA 306 (348)
T ss_pred C-ceEEEeecccccCCeeeEecCCCchhhccchhhHhhcCccCCCCCCcCCCCCCCCCccCCCccccCCCCc-ccccccc
Confidence 5 8999999999999999999999999999999999998788999999999999999999999988777654 3344444
Q ss_pred ccccCCCCCCCCCCCCCCCCcccccccCCCCccccccc
Q 022509 160 SSLASSSALHIPPSMSHSPSVSHIHSVASTPYIPQSLR 197 (296)
Q Consensus 160 S~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (296)
|+..-.....+++. +..+.+..+.+.++..++|.++
T Consensus 307 s~~~~~~~~~~~~~--~~~s~~~~~~~~s~~~~~~~~~ 342 (348)
T KOG4628|consen 307 SSQSLEILSRVSPS--GGDSPSLEPAYVSHNPTPQSFP 342 (348)
T ss_pred cccccccccccCCC--CCCCCcchhhhhhcCcccccCC
Confidence 43332222222222 2234444666777777777775
No 2
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=99.56 E-value=1.3e-15 Score=104.47 Aligned_cols=44 Identities=48% Similarity=1.171 Sum_probs=39.7
Q ss_pred CccceecccccCCCceEEeCCCCccchhhHHHHHhhCCCCCCccc
Q 022509 82 RTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCK 126 (296)
Q Consensus 82 ~~CaICLe~f~~~d~vr~LpCgH~FH~~CId~WL~~~~~tCPlCR 126 (296)
++|+||+++|..++.+..++|||+||.+||++|++. +.+||+||
T Consensus 1 d~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~-~~~CP~CR 44 (44)
T PF13639_consen 1 DECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKR-NNSCPVCR 44 (44)
T ss_dssp -CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHH-SSB-TTTH
T ss_pred CCCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHh-CCcCCccC
Confidence 479999999999999999999999999999999998 56799998
No 3
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.39 E-value=1.9e-13 Score=127.89 Aligned_cols=53 Identities=40% Similarity=1.012 Sum_probs=48.5
Q ss_pred CCCCccceecccccCCCceEEeCCCCccchhhHHHHHhhCCCCCCccccccCC
Q 022509 79 CTSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDART 131 (296)
Q Consensus 79 ~~~~~CaICLe~f~~~d~vr~LpCgH~FH~~CId~WL~~~~~tCPlCR~~i~~ 131 (296)
..+.+|+|||++|..+|++++|||+|.||..|+++|+...+..||+||..+++
T Consensus 321 ~~GveCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~iPP 373 (374)
T COG5540 321 DKGVECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAIPP 373 (374)
T ss_pred CCCceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhcccCCccCCCCCC
Confidence 35689999999999999999999999999999999999667779999998875
No 4
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=99.36 E-value=2.8e-12 Score=122.85 Aligned_cols=75 Identities=27% Similarity=0.699 Sum_probs=53.5
Q ss_pred cHHHHHhCCcceeecccccCCCCCccceecccc-cCC---------CceEEeCCCCccchhhHHHHHhhCCCCCCccccc
Q 022509 59 SRRLVKAMPSLIFTAVVEDNCTSRTCAICLEDY-SVG---------EKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRD 128 (296)
Q Consensus 59 ~~~~i~~lp~~~~~~~~~~~~~~~~CaICLe~f-~~~---------d~vr~LpCgH~FH~~CId~WL~~~~~tCPlCR~~ 128 (296)
.|++.+-+++...++. ..++..|.||+|++ ..+ .+-+.|||||+||.+|++.|+++ +.+||+||.+
T Consensus 268 ~kdl~~~~~t~t~eql---~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ER-qQTCPICr~p 343 (491)
T COG5243 268 TKDLNAMYPTATEEQL---TNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLER-QQTCPICRRP 343 (491)
T ss_pred hhHHHhhcchhhhhhh---cCCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHh-ccCCCcccCc
Confidence 3455555665443332 34579999999994 433 13478999999999999999999 4559999999
Q ss_pred -cCCCCCCCC
Q 022509 129 -ARTSTGEPP 137 (296)
Q Consensus 129 -i~~~~~~~~ 137 (296)
+.+..++.+
T Consensus 344 ~ifd~~~~~~ 353 (491)
T COG5243 344 VIFDQSSPTP 353 (491)
T ss_pred cccccCCCCc
Confidence 555555443
No 5
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=99.31 E-value=1.2e-12 Score=99.63 Aligned_cols=46 Identities=35% Similarity=0.862 Sum_probs=35.8
Q ss_pred CCCccceecccccC----------CCceEEeCCCCccchhhHHHHHhhCCCCCCccc
Q 022509 80 TSRTCAICLEDYSV----------GEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCK 126 (296)
Q Consensus 80 ~~~~CaICLe~f~~----------~d~vr~LpCgH~FH~~CId~WL~~~~~tCPlCR 126 (296)
.++.|+||+++|.+ +-.+...+|||.||..||.+||+. +.+||+||
T Consensus 18 ~~d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~-~~~CP~CR 73 (73)
T PF12678_consen 18 ADDNCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQ-NNTCPLCR 73 (73)
T ss_dssp CCSBETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTT-SSB-TTSS
T ss_pred cCCcccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhc-CCcCCCCC
Confidence 34569999999933 224556679999999999999998 55799998
No 6
>PHA02929 N1R/p28-like protein; Provisional
Probab=99.29 E-value=2.1e-12 Score=118.72 Aligned_cols=74 Identities=27% Similarity=0.597 Sum_probs=53.6
Q ss_pred CccHHHHHhCCcceeeccc-ccCCCCCccceecccccCCCc----eEE-eCCCCccchhhHHHHHhhCCCCCCccccccC
Q 022509 57 GMSRRLVKAMPSLIFTAVV-EDNCTSRTCAICLEDYSVGEK----LRI-LPCRHKFHAFCVDSWLTSWRTFCPVCKRDAR 130 (296)
Q Consensus 57 ~l~~~~i~~lp~~~~~~~~-~~~~~~~~CaICLe~f~~~d~----vr~-LpCgH~FH~~CId~WL~~~~~tCPlCR~~i~ 130 (296)
+..+..++.+|........ .+...+.+|+||++++..++. +.+ ++|+|.||.+||++|++. +.+||+||..+.
T Consensus 149 ~~~~~~i~~lp~vl~~~e~~~~~~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~-~~tCPlCR~~~~ 227 (238)
T PHA02929 149 KNYKKFLKTIPSVLSEYEKLYNRSKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKE-KNTCPVCRTPFI 227 (238)
T ss_pred chhHHHHHhcchhhhhhhhhhcCCCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhc-CCCCCCCCCEee
Confidence 4456777778876543221 123457899999999876541 234 469999999999999997 667999998775
Q ss_pred C
Q 022509 131 T 131 (296)
Q Consensus 131 ~ 131 (296)
.
T Consensus 228 ~ 228 (238)
T PHA02929 228 S 228 (238)
T ss_pred E
Confidence 3
No 7
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=99.10 E-value=7.3e-11 Score=78.70 Aligned_cols=45 Identities=42% Similarity=1.082 Sum_probs=37.6
Q ss_pred ccceecccccCCCceEEeCCCCccchhhHHHHHhhCCCCCCcccccc
Q 022509 83 TCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDA 129 (296)
Q Consensus 83 ~CaICLe~f~~~d~vr~LpCgH~FH~~CId~WL~~~~~tCPlCR~~i 129 (296)
+|+||++.+ .+.+..++|||.||..|++.|++..+..||+||..+
T Consensus 1 ~C~iC~~~~--~~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEF--REPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhh--hCceEecCCCChhcHHHHHHHHHhCcCCCCCCCCcC
Confidence 599999998 345566679999999999999997566799999764
No 8
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=99.06 E-value=1.8e-10 Score=102.58 Aligned_cols=55 Identities=31% Similarity=0.595 Sum_probs=43.4
Q ss_pred CCCCccceecccccCCCceEEeCCCCccchhhHHHHHhh---------------CCCCCCccccccCCCCCCC
Q 022509 79 CTSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTS---------------WRTFCPVCKRDARTSTGEP 136 (296)
Q Consensus 79 ~~~~~CaICLe~f~~~d~vr~LpCgH~FH~~CId~WL~~---------------~~~tCPlCR~~i~~~~~~~ 136 (296)
.++.+|+||++.+++. .+++|||.||+.||.+|+.. .+..||+||.++....-.+
T Consensus 16 ~~~~~CpICld~~~dP---VvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~LvP 85 (193)
T PLN03208 16 GGDFDCNICLDQVRDP---VVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATLVP 85 (193)
T ss_pred CCccCCccCCCcCCCc---EEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcEEE
Confidence 3568999999998654 56789999999999999853 1346999999997654433
No 9
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.03 E-value=2.5e-10 Score=106.50 Aligned_cols=50 Identities=32% Similarity=0.809 Sum_probs=43.0
Q ss_pred CCCccceecccccCCCceEEeCCCCccchhhHHHHHhhCCCCCCccccccCCCC
Q 022509 80 TSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDARTST 133 (296)
Q Consensus 80 ~~~~CaICLe~f~~~d~vr~LpCgH~FH~~CId~WL~~~~~tCPlCR~~i~~~~ 133 (296)
....|.+|||..... ..+||||+||+.||.+|... +..||+||+...+.+
T Consensus 238 a~~kC~LCLe~~~~p---SaTpCGHiFCWsCI~~w~~e-k~eCPlCR~~~~psk 287 (293)
T KOG0317|consen 238 ATRKCSLCLENRSNP---SATPCGHIFCWSCILEWCSE-KAECPLCREKFQPSK 287 (293)
T ss_pred CCCceEEEecCCCCC---CcCcCcchHHHHHHHHHHcc-ccCCCcccccCCCcc
Confidence 458999999997655 67899999999999999998 666999999887654
No 10
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.02 E-value=2.6e-10 Score=116.00 Aligned_cols=55 Identities=33% Similarity=0.758 Sum_probs=46.9
Q ss_pred CCCccceecccccCCCc--eEEeCCCCccchhhHHHHHhhCCCCCCccccccCCCCCC
Q 022509 80 TSRTCAICLEDYSVGEK--LRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDARTSTGE 135 (296)
Q Consensus 80 ~~~~CaICLe~f~~~d~--vr~LpCgH~FH~~CId~WL~~~~~tCPlCR~~i~~~~~~ 135 (296)
.+..|.||+|++..+++ .+.|+|+|+||..|+..|+++ +.+||+||..+......
T Consensus 290 ~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er-~qtCP~CR~~~~~~~~~ 346 (543)
T KOG0802|consen 290 SDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFER-QQTCPTCRTVLYDYVLW 346 (543)
T ss_pred cCCeeeeechhhccccccccceeecccchHHHHHHHHHHH-hCcCCcchhhhhccccc
Confidence 47899999999998765 688999999999999999999 66699999966555443
No 11
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=98.93 E-value=5e-10 Score=74.92 Aligned_cols=39 Identities=36% Similarity=0.997 Sum_probs=33.2
Q ss_pred cceecccccCCCceEEeCCCCccchhhHHHHHhhCCCCCCcc
Q 022509 84 CAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVC 125 (296)
Q Consensus 84 CaICLe~f~~~d~vr~LpCgH~FH~~CId~WL~~~~~tCPlC 125 (296)
|+||++.+.+ .+..++|||.|+.+|+.+|++. +..||+|
T Consensus 1 C~iC~~~~~~--~~~~~~CGH~fC~~C~~~~~~~-~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRD--PVVVTPCGHSFCKECIEKYLEK-NPKCPVC 39 (39)
T ss_dssp ETTTTSB-SS--EEEECTTSEEEEHHHHHHHHHC-TSB-TTT
T ss_pred CCCCCCcccC--cCEECCCCCchhHHHHHHHHHC-cCCCcCC
Confidence 8999999775 5678999999999999999998 6779998
No 12
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=98.93 E-value=5.8e-10 Score=78.42 Aligned_cols=46 Identities=30% Similarity=0.848 Sum_probs=38.3
Q ss_pred CCccceecccccCCCceEEeCCCCc-cchhhHHHHHhhCCCCCCccccccC
Q 022509 81 SRTCAICLEDYSVGEKLRILPCRHK-FHAFCVDSWLTSWRTFCPVCKRDAR 130 (296)
Q Consensus 81 ~~~CaICLe~f~~~d~vr~LpCgH~-FH~~CId~WL~~~~~tCPlCR~~i~ 130 (296)
+..|.||++... .+..+||||. |+..|++.|++. +..||+||+++.
T Consensus 2 ~~~C~iC~~~~~---~~~~~pCgH~~~C~~C~~~~~~~-~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 2 DEECPICFENPR---DVVLLPCGHLCFCEECAERLLKR-KKKCPICRQPIE 48 (50)
T ss_dssp HSB-TTTSSSBS---SEEEETTCEEEEEHHHHHHHHHT-TSBBTTTTBB-S
T ss_pred cCCCccCCccCC---ceEEeCCCChHHHHHHhHHhccc-CCCCCcCChhhc
Confidence 478999999854 3688899999 999999999996 666999999875
No 13
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.92 E-value=5.9e-10 Score=101.27 Aligned_cols=56 Identities=30% Similarity=0.554 Sum_probs=44.6
Q ss_pred CCCCCccceecccccCCCceEEeCCCCccchhhHHHHHhh--CCCCCCccccccCCCCCCC
Q 022509 78 NCTSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTS--WRTFCPVCKRDARTSTGEP 136 (296)
Q Consensus 78 ~~~~~~CaICLe~f~~~d~vr~LpCgH~FH~~CId~WL~~--~~~tCPlCR~~i~~~~~~~ 136 (296)
+....+|.||||.-++. .++.|||.||+.||.+||.. +...||+||..|...+-.|
T Consensus 44 ~~~~FdCNICLd~akdP---VvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~vvP 101 (230)
T KOG0823|consen 44 DGGFFDCNICLDLAKDP---VVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSIDTVVP 101 (230)
T ss_pred CCCceeeeeeccccCCC---EEeecccceehHHHHHHHhhcCCCeeCCccccccccceEEe
Confidence 34578999999986544 56679999999999999985 2345999999988765443
No 14
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=98.90 E-value=8.9e-10 Score=86.18 Aligned_cols=51 Identities=29% Similarity=0.806 Sum_probs=39.7
Q ss_pred CCCccceecccccC--------CCc--eEEeCCCCccchhhHHHHHhh--CCCCCCccccccC
Q 022509 80 TSRTCAICLEDYSV--------GEK--LRILPCRHKFHAFCVDSWLTS--WRTFCPVCKRDAR 130 (296)
Q Consensus 80 ~~~~CaICLe~f~~--------~d~--vr~LpCgH~FH~~CId~WL~~--~~~tCPlCR~~i~ 130 (296)
+++.|.||...|+. +|. +..-.|+|.||..||.+||.. .+..||+||+...
T Consensus 20 ~dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~ 82 (85)
T PF12861_consen 20 NDDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWK 82 (85)
T ss_pred CCCceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeee
Confidence 46899999999973 332 233349999999999999995 3567999998764
No 15
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.84 E-value=2.6e-09 Score=68.68 Aligned_cols=39 Identities=44% Similarity=1.088 Sum_probs=33.4
Q ss_pred cceecccccCCCceEEeCCCCccchhhHHHHHhhCCCCCCcc
Q 022509 84 CAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVC 125 (296)
Q Consensus 84 CaICLe~f~~~d~vr~LpCgH~FH~~CId~WL~~~~~tCPlC 125 (296)
|+||++. .+....++|||.||..|++.|++..+..||+|
T Consensus 1 C~iC~~~---~~~~~~~~C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEE---LKDPVVLPCGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccC---CCCcEEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence 7899998 34568889999999999999999546679998
No 16
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.83 E-value=2.5e-09 Score=73.46 Aligned_cols=44 Identities=32% Similarity=0.831 Sum_probs=38.1
Q ss_pred ccceecccccCCCceEEeCCCCccchhhHHHHHhhCCCCCCcccc
Q 022509 83 TCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKR 127 (296)
Q Consensus 83 ~CaICLe~f~~~d~vr~LpCgH~FH~~CId~WL~~~~~tCPlCR~ 127 (296)
.|.||+++|.+.+..++++|||+|+..|++.+... ...||+||+
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~~~-~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLKGK-SVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCHHHHHHHHhhcCC-CCCCcCCCC
Confidence 49999999966777889999999999999999833 566999985
No 17
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.82 E-value=2e-09 Score=94.35 Aligned_cols=52 Identities=25% Similarity=0.567 Sum_probs=41.8
Q ss_pred CCCCccceecccccCCCceEEeCCCCccchhhHHHHHhhCCCCCCccccccCCC
Q 022509 79 CTSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDARTS 132 (296)
Q Consensus 79 ~~~~~CaICLe~f~~~d~vr~LpCgH~FH~~CId~WL~~~~~tCPlCR~~i~~~ 132 (296)
.+...|+|||+.+.+... .-+.|||+||..||+.-++. ...||+||..|...
T Consensus 129 ~~~~~CPiCl~~~sek~~-vsTkCGHvFC~~Cik~alk~-~~~CP~C~kkIt~k 180 (187)
T KOG0320|consen 129 EGTYKCPICLDSVSEKVP-VSTKCGHVFCSQCIKDALKN-TNKCPTCRKKITHK 180 (187)
T ss_pred ccccCCCceecchhhccc-cccccchhHHHHHHHHHHHh-CCCCCCcccccchh
Confidence 345899999999876532 23679999999999999998 44599999877654
No 18
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.80 E-value=2.1e-09 Score=72.20 Aligned_cols=40 Identities=43% Similarity=1.035 Sum_probs=34.5
Q ss_pred cceecccccCCCceEEeCCCCccchhhHHHHHh-hCCCCCCcc
Q 022509 84 CAICLEDYSVGEKLRILPCRHKFHAFCVDSWLT-SWRTFCPVC 125 (296)
Q Consensus 84 CaICLe~f~~~d~vr~LpCgH~FH~~CId~WL~-~~~~tCPlC 125 (296)
|+||++.+... +..++|||.|+.+||++|++ .....||+|
T Consensus 1 C~iC~~~~~~~--~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDP--VILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSE--EEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCC--CEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 89999998755 36889999999999999999 446679998
No 19
>PHA02926 zinc finger-like protein; Provisional
Probab=98.77 E-value=3.7e-09 Score=95.82 Aligned_cols=54 Identities=28% Similarity=0.731 Sum_probs=40.0
Q ss_pred CCCCCccceecccccCC----C-ceEEe-CCCCccchhhHHHHHhhCC-----CCCCccccccCC
Q 022509 78 NCTSRTCAICLEDYSVG----E-KLRIL-PCRHKFHAFCVDSWLTSWR-----TFCPVCKRDART 131 (296)
Q Consensus 78 ~~~~~~CaICLe~f~~~----d-~vr~L-pCgH~FH~~CId~WL~~~~-----~tCPlCR~~i~~ 131 (296)
...+.+|+||||..-++ + .-.+| +|+|.||..||+.|.+..+ ..||+||....-
T Consensus 167 ~SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~ 231 (242)
T PHA02926 167 VSKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFRN 231 (242)
T ss_pred ccCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceeee
Confidence 34568999999986432 1 23355 5999999999999998532 349999987654
No 20
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=98.73 E-value=6.3e-09 Score=71.16 Aligned_cols=39 Identities=33% Similarity=0.774 Sum_probs=30.1
Q ss_pred cceecccccCCCceEEeCCCCccchhhHHHHHhhCC---CCCCcc
Q 022509 84 CAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWR---TFCPVC 125 (296)
Q Consensus 84 CaICLe~f~~~d~vr~LpCgH~FH~~CId~WL~~~~---~tCPlC 125 (296)
|+||++-|++. ..|+|||.|+..||.+|.+..+ ..||+|
T Consensus 1 CpiC~~~~~~P---v~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDP---VSLPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSE---EE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCc---cccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 89999999866 7799999999999999998633 359988
No 21
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=98.63 E-value=3.5e-08 Score=71.60 Aligned_cols=46 Identities=26% Similarity=0.402 Sum_probs=39.9
Q ss_pred CccceecccccCCCceEEeCCCCccchhhHHHHHhhCCCCCCccccccCC
Q 022509 82 RTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDART 131 (296)
Q Consensus 82 ~~CaICLe~f~~~d~vr~LpCgH~FH~~CId~WL~~~~~tCPlCR~~i~~ 131 (296)
..|+||++.+++. .+++|||+|++.||.+|++. +.+||+|+..+..
T Consensus 2 ~~Cpi~~~~~~~P---v~~~~G~v~~~~~i~~~~~~-~~~cP~~~~~~~~ 47 (63)
T smart00504 2 FLCPISLEVMKDP---VILPSGQTYERRAIEKWLLS-HGTDPVTGQPLTH 47 (63)
T ss_pred cCCcCCCCcCCCC---EECCCCCEEeHHHHHHHHHH-CCCCCCCcCCCCh
Confidence 4799999998865 56799999999999999998 6679999987743
No 22
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.59 E-value=5.8e-08 Score=96.32 Aligned_cols=52 Identities=27% Similarity=0.844 Sum_probs=41.3
Q ss_pred CCCccceecccccCCC--------------ceEEeCCCCccchhhHHHHHhhCCCCCCccccccCC
Q 022509 80 TSRTCAICLEDYSVGE--------------KLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDART 131 (296)
Q Consensus 80 ~~~~CaICLe~f~~~d--------------~vr~LpCgH~FH~~CId~WL~~~~~tCPlCR~~i~~ 131 (296)
....|+||+.++..-. ....+||+|+||..|+.+|+...+..||+||..+++
T Consensus 570 ~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~ykl~CPvCR~pLPp 635 (636)
T KOG0828|consen 570 RTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYKLICPVCRCPLPP 635 (636)
T ss_pred ccccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhcccCCccCCCCCC
Confidence 3578999999875411 134669999999999999999656679999998864
No 23
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.56 E-value=5.3e-08 Score=90.42 Aligned_cols=56 Identities=29% Similarity=0.723 Sum_probs=45.3
Q ss_pred cCCCCCccceecccccCCC-------ceEEeCCCCccchhhHHHHHhh-CCCCCCccccccCCC
Q 022509 77 DNCTSRTCAICLEDYSVGE-------KLRILPCRHKFHAFCVDSWLTS-WRTFCPVCKRDARTS 132 (296)
Q Consensus 77 ~~~~~~~CaICLe~f~~~d-------~vr~LpCgH~FH~~CId~WL~~-~~~tCPlCR~~i~~~ 132 (296)
...++..|+||-..+...+ +...|.|+|+||+.||+.|-.. ++.+||.|++.+..+
T Consensus 220 khl~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekVdl~ 283 (328)
T KOG1734|consen 220 KHLSDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVDLK 283 (328)
T ss_pred CCCCcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHhhHh
Confidence 3446799999998887654 6788999999999999999764 356799999887643
No 24
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=98.49 E-value=8.7e-08 Score=73.94 Aligned_cols=50 Identities=28% Similarity=0.783 Sum_probs=37.2
Q ss_pred Cccceecccc-----------cCCCceEEe--CCCCccchhhHHHHHhhCCCCCCccccccCCC
Q 022509 82 RTCAICLEDY-----------SVGEKLRIL--PCRHKFHAFCVDSWLTSWRTFCPVCKRDARTS 132 (296)
Q Consensus 82 ~~CaICLe~f-----------~~~d~vr~L--pCgH~FH~~CId~WL~~~~~tCPlCR~~i~~~ 132 (296)
+.|+||...| .++++..+. .|+|.||..||.+||.. +..||++|+...-.
T Consensus 21 d~CaICRnhim~~C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~rWL~T-k~~CPld~q~w~~~ 83 (88)
T COG5194 21 DVCAICRNHIMGTCPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDT-KGVCPLDRQTWVLA 83 (88)
T ss_pred chhhhhhccccCcCcccccCCCCCCcceEEEEecchHHHHHHHHHHHhh-CCCCCCCCceeEEe
Confidence 5566666555 345554443 39999999999999998 67799999876543
No 25
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.49 E-value=3.3e-08 Score=75.67 Aligned_cols=51 Identities=31% Similarity=0.831 Sum_probs=39.0
Q ss_pred CCCccceecccccC--------CCceEEe--CCCCccchhhHHHHHhh--CCCCCCccccccC
Q 022509 80 TSRTCAICLEDYSV--------GEKLRIL--PCRHKFHAFCVDSWLTS--WRTFCPVCKRDAR 130 (296)
Q Consensus 80 ~~~~CaICLe~f~~--------~d~vr~L--pCgH~FH~~CId~WL~~--~~~tCPlCR~~i~ 130 (296)
.++.|.||..+|.. +|..-.+ .|.|.||..||.+|+.. .+..||+||+...
T Consensus 19 ~~e~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~ 81 (84)
T KOG1493|consen 19 PDETCGICRMPFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQ 81 (84)
T ss_pred CCCccceEecccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeE
Confidence 45699999999965 3333322 29999999999999984 3456999998754
No 26
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.49 E-value=7.2e-08 Score=94.70 Aligned_cols=50 Identities=30% Similarity=0.754 Sum_probs=42.1
Q ss_pred CCCCccceecccccCCCceEEeCCCCccchhhHHHHHhhCCCCCCccccccCCC
Q 022509 79 CTSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDARTS 132 (296)
Q Consensus 79 ~~~~~CaICLe~f~~~d~vr~LpCgH~FH~~CId~WL~~~~~tCPlCR~~i~~~ 132 (296)
.....|+||++.|... .+++|||.||..||..|+.. +..||+||..+...
T Consensus 24 e~~l~C~IC~d~~~~P---vitpCgH~FCs~CI~~~l~~-~~~CP~Cr~~~~~~ 73 (397)
T TIGR00599 24 DTSLRCHICKDFFDVP---VLTSCSHTFCSLCIRRCLSN-QPKCPLCRAEDQES 73 (397)
T ss_pred ccccCCCcCchhhhCc---cCCCCCCchhHHHHHHHHhC-CCCCCCCCCccccc
Confidence 3568999999998755 46899999999999999987 55799999987653
No 27
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=98.44 E-value=1.1e-07 Score=65.52 Aligned_cols=39 Identities=38% Similarity=0.780 Sum_probs=22.9
Q ss_pred cceecccccCCC-ceEEeCCCCccchhhHHHHHhhC---CCCCC
Q 022509 84 CAICLEDYSVGE-KLRILPCRHKFHAFCVDSWLTSW---RTFCP 123 (296)
Q Consensus 84 CaICLe~f~~~d-~vr~LpCgH~FH~~CId~WL~~~---~~tCP 123 (296)
|+||+| |...+ .-++|+|||+|+++||++|++.. ...||
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence 899999 76544 45789999999999999999963 34576
No 28
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.42 E-value=1.2e-07 Score=87.85 Aligned_cols=52 Identities=29% Similarity=0.678 Sum_probs=43.0
Q ss_pred CCCccceecccccCCCceEEeCCCCccchhhHHH-HHhhCCCCCCccccccCCCCC
Q 022509 80 TSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDS-WLTSWRTFCPVCKRDARTSTG 134 (296)
Q Consensus 80 ~~~~CaICLe~f~~~d~vr~LpCgH~FH~~CId~-WL~~~~~tCPlCR~~i~~~~~ 134 (296)
.+..|+||+|..... ..++|||+||..||-. |-++.-..||+||+.+.+++.
T Consensus 214 ~d~kC~lC~e~~~~p---s~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~pk~v 266 (271)
T COG5574 214 ADYKCFLCLEEPEVP---SCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVYPKKV 266 (271)
T ss_pred cccceeeeecccCCc---ccccccchhhHHHHHHHHHhhccccCchhhhhccchhh
Confidence 468999999996654 6788999999999999 988745569999998876543
No 29
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=98.35 E-value=3.8e-07 Score=64.44 Aligned_cols=43 Identities=28% Similarity=0.804 Sum_probs=33.5
Q ss_pred ccceecccccCCCceEEeCCC-----CccchhhHHHHHhhC-CCCCCccc
Q 022509 83 TCAICLEDYSVGEKLRILPCR-----HKFHAFCVDSWLTSW-RTFCPVCK 126 (296)
Q Consensus 83 ~CaICLe~f~~~d~vr~LpCg-----H~FH~~CId~WL~~~-~~tCPlCR 126 (296)
.|-||++. ..++...++||. |.+|..|+++|+... +.+||+|+
T Consensus 1 ~CrIC~~~-~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDE-GDEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCCC-CCCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 48999994 444455688974 899999999999863 45799995
No 30
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.26 E-value=2.9e-07 Score=74.23 Aligned_cols=50 Identities=30% Similarity=0.751 Sum_probs=37.0
Q ss_pred CCCccceecccccC------------CCceEEe--CCCCccchhhHHHHHhhCCCCCCccccccC
Q 022509 80 TSRTCAICLEDYSV------------GEKLRIL--PCRHKFHAFCVDSWLTSWRTFCPVCKRDAR 130 (296)
Q Consensus 80 ~~~~CaICLe~f~~------------~d~vr~L--pCgH~FH~~CId~WL~~~~~tCPlCR~~i~ 130 (296)
.-+.|+||...+-+ .+++.+. .|+|.||..||.+||++ +..||+|.++-.
T Consensus 45 ~vDnCAICRnHIMd~CieCQa~~~~~~~EC~VaWG~CNHaFH~hCisrWlkt-r~vCPLdn~eW~ 108 (114)
T KOG2930|consen 45 VVDNCAICRNHIMDLCIECQANQSATSEECTVAWGVCNHAFHFHCISRWLKT-RNVCPLDNKEWV 108 (114)
T ss_pred eechhHHHHHHHHHHHHhhccCCCCCCCceEEEeeecchHHHHHHHHHHHhh-cCcCCCcCccee
Confidence 45789999866521 2333333 39999999999999998 566999987643
No 31
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=98.18 E-value=4e-07 Score=95.94 Aligned_cols=55 Identities=31% Similarity=0.748 Sum_probs=40.8
Q ss_pred ccCCCCCccceecccccCCC-c---eEEeCCCCccchhhHHHHHhh-CCCCCCccccccC
Q 022509 76 EDNCTSRTCAICLEDYSVGE-K---LRILPCRHKFHAFCVDSWLTS-WRTFCPVCKRDAR 130 (296)
Q Consensus 76 ~~~~~~~~CaICLe~f~~~d-~---vr~LpCgH~FH~~CId~WL~~-~~~tCPlCR~~i~ 130 (296)
+.-.+.++|+||..-+..-| . -+.-.|.|.||..|+.+|++. ++.+||+||..++
T Consensus 1464 ~~fsG~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219 1464 EKFSGHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred hhcCCcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCccccccc
Confidence 33457899999998776322 1 122238999999999999995 4677999998764
No 32
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.16 E-value=1.4e-06 Score=82.84 Aligned_cols=53 Identities=23% Similarity=0.457 Sum_probs=40.6
Q ss_pred CCccceecccccCCCc--eEEeCCCCccchhhHHHHHhhCCCCCCccccccCCCC
Q 022509 81 SRTCAICLEDYSVGEK--LRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDARTST 133 (296)
Q Consensus 81 ~~~CaICLe~f~~~d~--vr~LpCgH~FH~~CId~WL~~~~~tCPlCR~~i~~~~ 133 (296)
+..|+||+.+-..+.. +.+.+|||.||..||+..+......||.|+..+....
T Consensus 3 ~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~~ 57 (309)
T TIGR00570 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGSGSCPECDTPLRKNN 57 (309)
T ss_pred CCCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcCCCCCCCCCCCccchhh
Confidence 4789999997433333 3333799999999999977665667999998877655
No 33
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.16 E-value=6.4e-07 Score=79.83 Aligned_cols=44 Identities=36% Similarity=0.763 Sum_probs=39.4
Q ss_pred CCCCccceecccccCCCceEEeCCCCccchhhHHHHHhhCCCCCCccc
Q 022509 79 CTSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCK 126 (296)
Q Consensus 79 ~~~~~CaICLe~f~~~d~vr~LpCgH~FH~~CId~WL~~~~~tCPlCR 126 (296)
.+...|+||++.|... ++++|||.||..|+..|+. ....||.||
T Consensus 11 ~~~~~C~iC~~~~~~p---~~l~C~H~~c~~C~~~~~~-~~~~Cp~cr 54 (386)
T KOG2177|consen 11 QEELTCPICLEYFREP---VLLPCGHNFCRACLTRSWE-GPLSCPVCR 54 (386)
T ss_pred cccccChhhHHHhhcC---ccccccchHhHHHHHHhcC-CCcCCcccC
Confidence 3568999999999988 8899999999999999988 466799999
No 34
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=98.09 E-value=1.6e-06 Score=65.71 Aligned_cols=49 Identities=22% Similarity=0.320 Sum_probs=38.3
Q ss_pred CCccceecccccCCCceEEeCCCCccchhhHHHHHhhCCCCCCccccccCCC
Q 022509 81 SRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDARTS 132 (296)
Q Consensus 81 ~~~CaICLe~f~~~d~vr~LpCgH~FH~~CId~WL~~~~~tCPlCR~~i~~~ 132 (296)
...|+||.+-|.+. .+++|||.|.+.||+.|++.+..+||+|++.+...
T Consensus 4 ~f~CpIt~~lM~dP---Vi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~ 52 (73)
T PF04564_consen 4 EFLCPITGELMRDP---VILPSGHTYERSAIERWLEQNGGTDPFTRQPLSES 52 (73)
T ss_dssp GGB-TTTSSB-SSE---EEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-SGG
T ss_pred ccCCcCcCcHhhCc---eeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCCcc
Confidence 47899999999866 67899999999999999998677799999887653
No 35
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=98.08 E-value=8.5e-07 Score=67.05 Aligned_cols=51 Identities=27% Similarity=0.632 Sum_probs=24.1
Q ss_pred CCccceecccccCCCceEEe-----CCCCccchhhHHHHHhh---CC-------CCCCccccccCC
Q 022509 81 SRTCAICLEDYSVGEKLRIL-----PCRHKFHAFCVDSWLTS---WR-------TFCPVCKRDART 131 (296)
Q Consensus 81 ~~~CaICLe~f~~~d~vr~L-----pCgH~FH~~CId~WL~~---~~-------~tCPlCR~~i~~ 131 (296)
+.+|.||.+.+..++++-.+ .|+..||..|+.+||.. .+ .+||.|+++|.-
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~~ 67 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPISW 67 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEEG
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeeeE
Confidence 46899999987633322111 38999999999999974 11 239999988753
No 36
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.07 E-value=2.4e-06 Score=82.22 Aligned_cols=51 Identities=27% Similarity=0.668 Sum_probs=41.4
Q ss_pred CCCCccceecccccCCCceEEeCCCCc-cchhhHHHHHhhCCCCCCccccccCCCC
Q 022509 79 CTSRTCAICLEDYSVGEKLRILPCRHK-FHAFCVDSWLTSWRTFCPVCKRDARTST 133 (296)
Q Consensus 79 ~~~~~CaICLe~f~~~d~vr~LpCgH~-FH~~CId~WL~~~~~tCPlCR~~i~~~~ 133 (296)
+.+.+|.|||.+-+ .+.+|||.|. .|..|.+...-+ ...||+||+++...-
T Consensus 288 ~~gkeCVIClse~r---dt~vLPCRHLCLCs~Ca~~Lr~q-~n~CPICRqpi~~ll 339 (349)
T KOG4265|consen 288 ESGKECVICLSESR---DTVVLPCRHLCLCSGCAKSLRYQ-TNNCPICRQPIEELL 339 (349)
T ss_pred cCCCeeEEEecCCc---ceEEecchhhehhHhHHHHHHHh-hcCCCccccchHhhh
Confidence 34789999999854 4589999999 999999997655 445999999987643
No 37
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.07 E-value=2e-06 Score=85.90 Aligned_cols=55 Identities=27% Similarity=0.484 Sum_probs=41.3
Q ss_pred CCccceecccccCCCceEEeCCCCccchhhHHHHHhhC----CCCCCccccccCCCCCCCCC
Q 022509 81 SRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSW----RTFCPVCKRDARTSTGEPPA 138 (296)
Q Consensus 81 ~~~CaICLe~f~~~d~vr~LpCgH~FH~~CId~WL~~~----~~tCPlCR~~i~~~~~~~~~ 138 (296)
+..|+|||++.... ..+-|||+||..||-+.+... ...||+||..|....-.+..
T Consensus 186 ~~~CPICL~~~~~p---~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kdl~pv~ 244 (513)
T KOG2164|consen 186 DMQCPICLEPPSVP---VRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLKDLLPVF 244 (513)
T ss_pred CCcCCcccCCCCcc---cccccCceeeHHHHHHHHhhhcccCCccCCchhhhccccceeeee
Confidence 78999999996655 233499999999998877642 23499999998875544443
No 38
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=98.04 E-value=1.5e-06 Score=85.58 Aligned_cols=47 Identities=34% Similarity=0.916 Sum_probs=38.4
Q ss_pred CCccceecccccCCC-ceEEeCCCCccchhhHHHHHhhCCCCCCccccccC
Q 022509 81 SRTCAICLEDYSVGE-KLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDAR 130 (296)
Q Consensus 81 ~~~CaICLe~f~~~d-~vr~LpCgH~FH~~CId~WL~~~~~tCPlCR~~i~ 130 (296)
-.+|+||||.+...- .++...|.|.||..|+..| +..+||+||....
T Consensus 175 LPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w---~~~scpvcR~~q~ 222 (493)
T KOG0804|consen 175 LPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKW---WDSSCPVCRYCQS 222 (493)
T ss_pred CCCcchhHhhcCccccceeeeecccccchHHHhhc---ccCcChhhhhhcC
Confidence 479999999998763 3455569999999999999 5567999997655
No 39
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=97.84 E-value=5.4e-06 Score=79.43 Aligned_cols=48 Identities=31% Similarity=0.817 Sum_probs=42.2
Q ss_pred CCccceecccccCCCceEEeCCCCccchhhHHHHHhhCCCCCCccccccCCC
Q 022509 81 SRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDARTS 132 (296)
Q Consensus 81 ~~~CaICLe~f~~~d~vr~LpCgH~FH~~CId~WL~~~~~tCPlCR~~i~~~ 132 (296)
-..|.||.|-|... .++||+|.||.-||+..|.. +..||.|+..+.+.
T Consensus 23 lLRC~IC~eyf~ip---~itpCsHtfCSlCIR~~L~~-~p~CP~C~~~~~Es 70 (442)
T KOG0287|consen 23 LLRCGICFEYFNIP---MITPCSHTFCSLCIRKFLSY-KPQCPTCCVTVTES 70 (442)
T ss_pred HHHHhHHHHHhcCc---eeccccchHHHHHHHHHhcc-CCCCCceecccchh
Confidence 47899999999877 78899999999999999998 67799999877653
No 40
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.83 E-value=7.4e-06 Score=79.60 Aligned_cols=48 Identities=29% Similarity=0.693 Sum_probs=35.2
Q ss_pred CCccceecccccC-CCceEEeC-CCCccchhhHHHHHhhCC--CCCCcccccc
Q 022509 81 SRTCAICLEDYSV-GEKLRILP-CRHKFHAFCVDSWLTSWR--TFCPVCKRDA 129 (296)
Q Consensus 81 ~~~CaICLe~f~~-~d~vr~Lp-CgH~FH~~CId~WL~~~~--~tCPlCR~~i 129 (296)
...|.|| +++.+ ...+.-.- |||+||..|+.+|++... ..||+||-.+
T Consensus 4 ~A~C~Ic-~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~ik~ 55 (465)
T KOG0827|consen 4 MAECHIC-IDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQIKL 55 (465)
T ss_pred cceeeEe-ccCCccccccccccchhhHHHHHHHHHHHccCCccCCCCceeecc
Confidence 3689999 55544 44555444 999999999999999532 3599998333
No 41
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=97.78 E-value=1.1e-05 Score=75.99 Aligned_cols=46 Identities=33% Similarity=0.779 Sum_probs=39.6
Q ss_pred CCCccceecccccCCCceEEeCCCCccchhhHHHHHhhCCCCCCcccccc
Q 022509 80 TSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDA 129 (296)
Q Consensus 80 ~~~~CaICLe~f~~~d~vr~LpCgH~FH~~CId~WL~~~~~tCPlCR~~i 129 (296)
.-..|-||-+-|... ..++|||-||.-||+..|.. +..||+||.+.
T Consensus 24 s~lrC~IC~~~i~ip---~~TtCgHtFCslCIR~hL~~-qp~CP~Cr~~~ 69 (391)
T COG5432 24 SMLRCRICDCRISIP---CETTCGHTFCSLCIRRHLGT-QPFCPVCREDP 69 (391)
T ss_pred hHHHhhhhhheeecc---eecccccchhHHHHHHHhcC-CCCCccccccH
Confidence 357899999998766 56789999999999999998 66799999854
No 42
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.77 E-value=1.1e-05 Score=76.18 Aligned_cols=54 Identities=24% Similarity=0.504 Sum_probs=44.6
Q ss_pred CCccceecccccCCCceEEeCCCCccchhhHHHHHhhCCCCCCccccccCCCCCCCC
Q 022509 81 SRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDARTSTGEPP 137 (296)
Q Consensus 81 ~~~CaICLe~f~~~d~vr~LpCgH~FH~~CId~WL~~~~~tCPlCR~~i~~~~~~~~ 137 (296)
..+|+||+....-. ..|+|+|.||.-||+.-.+..+.+|++||.++.......+
T Consensus 7 ~~eC~IC~nt~n~P---v~l~C~HkFCyiCiKGsy~ndk~~CavCR~pids~i~~~p 60 (324)
T KOG0824|consen 7 KKECLICYNTGNCP---VNLYCFHKFCYICIKGSYKNDKKTCAVCRFPIDSTIDFEP 60 (324)
T ss_pred CCcceeeeccCCcC---ccccccchhhhhhhcchhhcCCCCCceecCCCCcchhcch
Confidence 47899999986544 6788999999999998877767789999999987665443
No 43
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=97.64 E-value=2.4e-05 Score=74.00 Aligned_cols=56 Identities=25% Similarity=0.691 Sum_probs=45.8
Q ss_pred CCCccceecccccCCCceEEeCCCCccchhhHHHHHhh----------------------CCCCCCccccccCCCCCC
Q 022509 80 TSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTS----------------------WRTFCPVCKRDARTSTGE 135 (296)
Q Consensus 80 ~~~~CaICLe~f~~~d~vr~LpCgH~FH~~CId~WL~~----------------------~~~tCPlCR~~i~~~~~~ 135 (296)
...+|+|||--|..++...+++|-|.||..|+...|.. .+..||+||..|......
T Consensus 114 p~gqCvICLygfa~~~~ft~T~C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~~e~~s 191 (368)
T KOG4445|consen 114 PNGQCVICLYGFASSPAFTVTACDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIKIEENS 191 (368)
T ss_pred CCCceEEEEEeecCCCceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhccccccc
Confidence 46899999999999999999999999999999766531 123499999988765543
No 44
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.59 E-value=1.2e-05 Score=77.32 Aligned_cols=58 Identities=22% Similarity=0.393 Sum_probs=45.7
Q ss_pred CCCCccceecccccCCCceEEeCCCCccchhhHHHHHhhCCCCCCccccccCCCCCCCCC
Q 022509 79 CTSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDARTSTGEPPA 138 (296)
Q Consensus 79 ~~~~~CaICLe~f~~~d~vr~LpCgH~FH~~CId~WL~~~~~tCPlCR~~i~~~~~~~~~ 138 (296)
..+..|.|||+-++.. +....|.|.||.+||..-++..+..||.||+.+...-....+
T Consensus 41 ~~~v~c~icl~llk~t--mttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~SkrsLr~D 98 (381)
T KOG0311|consen 41 DIQVICPICLSLLKKT--MTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVSKRSLRID 98 (381)
T ss_pred hhhhccHHHHHHHHhh--cccHHHHHHHHHHHHHHHHHhcCCCCchHHhhccccccCCCC
Confidence 3568999999987644 233349999999999999998888899999988776554443
No 45
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.53 E-value=2e-05 Score=56.90 Aligned_cols=48 Identities=23% Similarity=0.528 Sum_probs=34.6
Q ss_pred CCccceecccccCCCceEEeCCCCc-cchhhHHHHHhhCCCCCCccccccCC
Q 022509 81 SRTCAICLEDYSVGEKLRILPCRHK-FHAFCVDSWLTSWRTFCPVCKRDART 131 (296)
Q Consensus 81 ~~~CaICLe~f~~~d~vr~LpCgH~-FH~~CId~WL~~~~~tCPlCR~~i~~ 131 (296)
+++|.||+|.--+. ..-.|||. .+.+|-.+.++..+..||+||+++.+
T Consensus 7 ~dECTICye~pvds---VlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~d 55 (62)
T KOG4172|consen 7 SDECTICYEHPVDS---VLYTCGHMCMCYACGLRLKKALHGCCPICRAPIKD 55 (62)
T ss_pred ccceeeeccCcchH---HHHHcchHHhHHHHHHHHHHccCCcCcchhhHHHH
Confidence 48999999984322 12249999 88899655445447789999998754
No 46
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=97.51 E-value=1.7e-05 Score=82.65 Aligned_cols=51 Identities=24% Similarity=0.400 Sum_probs=40.7
Q ss_pred CCCccceecccccCCCceEEeCCCCccchhhHHHHHhhCCCCCCccccccCC
Q 022509 80 TSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDART 131 (296)
Q Consensus 80 ~~~~CaICLe~f~~~d~vr~LpCgH~FH~~CId~WL~~~~~tCPlCR~~i~~ 131 (296)
....|++||..+.++......+|+|.||..||+.|-+.. .+||+||..+..
T Consensus 122 ~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~a-qTCPiDR~EF~~ 172 (1134)
T KOG0825|consen 122 VENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRCA-QTCPVDRGEFGE 172 (1134)
T ss_pred hhhhhhHHHHHHHHHhhccccccccccHHHHhhhhhhhc-ccCchhhhhhhe
Confidence 346788888888777666666799999999999999984 459999975443
No 47
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.49 E-value=7e-05 Score=73.37 Aligned_cols=48 Identities=33% Similarity=0.927 Sum_probs=37.4
Q ss_pred CCCccceecccccCC-C-ceEEeCCCCccchhhHHHHHhh-CCCCCCcccc
Q 022509 80 TSRTCAICLEDYSVG-E-KLRILPCRHKFHAFCVDSWLTS-WRTFCPVCKR 127 (296)
Q Consensus 80 ~~~~CaICLe~f~~~-d-~vr~LpCgH~FH~~CId~WL~~-~~~tCPlCR~ 127 (296)
.+..|+|||+.++-. + .+..|.|||.|..+||+.||.+ .+..||.|..
T Consensus 3 ~g~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~ 53 (463)
T KOG1645|consen 3 CGTTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSG 53 (463)
T ss_pred ccccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCC
Confidence 468999999998764 3 4555669999999999999963 2345999954
No 48
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.45 E-value=5.4e-05 Score=73.36 Aligned_cols=53 Identities=28% Similarity=0.794 Sum_probs=39.8
Q ss_pred CCCCccceecccccCCC----ceEEeC-CCCccchhhHHHHHhhCC------CCCCccccccCC
Q 022509 79 CTSRTCAICLEDYSVGE----KLRILP-CRHKFHAFCVDSWLTSWR------TFCPVCKRDART 131 (296)
Q Consensus 79 ~~~~~CaICLe~f~~~d----~vr~Lp-CgH~FH~~CId~WL~~~~------~tCPlCR~~i~~ 131 (296)
..+.+|.||+|...+.. ...+|| |.|.||..||+.|-...+ ..||.||....-
T Consensus 159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~~ 222 (344)
T KOG1039|consen 159 SSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSSF 222 (344)
T ss_pred cccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCcccc
Confidence 34789999999976543 134556 999999999999985433 459999976543
No 49
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.18 E-value=0.00026 Score=64.74 Aligned_cols=58 Identities=24% Similarity=0.566 Sum_probs=46.6
Q ss_pred ccCCCCCccceecccccCCCceEEeCCCCccchhhHHHHHhhCC-------CCCCccccccCCCCC
Q 022509 76 EDNCTSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWR-------TFCPVCKRDARTSTG 134 (296)
Q Consensus 76 ~~~~~~~~CaICLe~f~~~d~vr~LpCgH~FH~~CId~WL~~~~-------~tCPlCR~~i~~~~~ 134 (296)
.|.+....|..|-..+..+|.+| |-|-|+||++|+++|-.+-. -.||.|-.+|.+...
T Consensus 45 ~DsDY~pNC~LC~t~La~gdt~R-LvCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiFPp~N 109 (299)
T KOG3970|consen 45 QDSDYNPNCRLCNTPLASGDTTR-LVCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEIFPPIN 109 (299)
T ss_pred hhcCCCCCCceeCCccccCccee-ehhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccCCCcc
Confidence 45556788999999999998776 56999999999999986511 239999999887654
No 50
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=97.16 E-value=0.00025 Score=77.94 Aligned_cols=66 Identities=26% Similarity=0.579 Sum_probs=47.6
Q ss_pred hCCcceeecccccCCCCCccceecccccCCCceEEeCCCCccchhhHHHHHhh-C--------CCCCCccccccC
Q 022509 65 AMPSLIFTAVVEDNCTSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTS-W--------RTFCPVCKRDAR 130 (296)
Q Consensus 65 ~lp~~~~~~~~~~~~~~~~CaICLe~f~~~d~vr~LpCgH~FH~~CId~WL~~-~--------~~tCPlCR~~i~ 130 (296)
-+|-..........+.++.|.||+.+--......+|.|+|+||..|.+.-|++ | -..||+|+.+|.
T Consensus 3470 CLPCl~Cdks~tkQD~DDmCmICFTE~L~AAP~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~In 3544 (3738)
T KOG1428|consen 3470 CLPCLHCDKSATKQDADDMCMICFTEALSAAPAIQLDCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKIN 3544 (3738)
T ss_pred cccccccChhhhhcccCceEEEEehhhhCCCcceecCCccchhHHHHHHHHHhcccCCeeEEeeeecccccchhh
Confidence 34444333333344568999999998777777889999999999999876664 1 124999998764
No 51
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=97.14 E-value=0.00022 Score=69.72 Aligned_cols=48 Identities=35% Similarity=0.801 Sum_probs=40.0
Q ss_pred CCCccceecccccCC-CceEEeCCCCccchhhHHHHHhh-CCCCCCcccc
Q 022509 80 TSRTCAICLEDYSVG-EKLRILPCRHKFHAFCVDSWLTS-WRTFCPVCKR 127 (296)
Q Consensus 80 ~~~~CaICLe~f~~~-d~vr~LpCgH~FH~~CId~WL~~-~~~tCPlCR~ 127 (296)
.+..|..|-|.+..+ +.+..|||.|+||..|+.+.|++ ...+||.||+
T Consensus 364 ~~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n~~rsCP~Crk 413 (518)
T KOG1941|consen 364 TELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENNGTRSCPNCRK 413 (518)
T ss_pred HhhhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhCCCCCCccHHH
Confidence 357899999998765 57889999999999999999986 2345999983
No 52
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=97.10 E-value=0.00018 Score=70.53 Aligned_cols=50 Identities=28% Similarity=0.747 Sum_probs=39.9
Q ss_pred CCccceecccccCCCceEEeCCCCccchhhHHHHHhhC-CCCCCccccccCCCC
Q 022509 81 SRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSW-RTFCPVCKRDARTST 133 (296)
Q Consensus 81 ~~~CaICLe~f~~~d~vr~LpCgH~FH~~CId~WL~~~-~~tCPlCR~~i~~~~ 133 (296)
-..|-||-|. +..|++-||||..|..|+..|-... ..+||.||.+|-...
T Consensus 369 FeLCKICaen---dKdvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKGte 419 (563)
T KOG1785|consen 369 FELCKICAEN---DKDVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIKGTE 419 (563)
T ss_pred HHHHHHhhcc---CCCcccccccchHHHHHHHhhcccCCCCCCCceeeEecccc
Confidence 4789999876 4567888999999999999998642 445999998775443
No 53
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=97.08 E-value=0.00015 Score=75.70 Aligned_cols=50 Identities=22% Similarity=0.524 Sum_probs=40.1
Q ss_pred CCCccceecccccCCCceEEeCCCCccchhhHHHHHhhCCCCCCccccccCCC
Q 022509 80 TSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDARTS 132 (296)
Q Consensus 80 ~~~~CaICLe~f~~~d~vr~LpCgH~FH~~CId~WL~~~~~tCPlCR~~i~~~ 132 (296)
+-..|++|-+.+++. .++.|||+||..||..-+...+..||.|-..+...
T Consensus 642 ~~LkCs~Cn~R~Kd~---vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFgan 691 (698)
T KOG0978|consen 642 ELLKCSVCNTRWKDA---VITKCGHVFCEECVQTRYETRQRKCPKCNAAFGAN 691 (698)
T ss_pred hceeCCCccCchhhH---HHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCcc
Confidence 447899999776533 55669999999999999997677799998776653
No 54
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=96.99 E-value=0.00021 Score=53.25 Aligned_cols=46 Identities=28% Similarity=0.633 Sum_probs=23.5
Q ss_pred CccceecccccCCCceEEeCCCCccchhhHHHHHhhCCCCCCccccccCCC
Q 022509 82 RTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDARTS 132 (296)
Q Consensus 82 ~~CaICLe~f~~~d~vr~LpCgH~FH~~CId~WL~~~~~tCPlCR~~i~~~ 132 (296)
..|++|.+-+++. |....|.|+|+..||..-+.. .||+|+.+...+
T Consensus 8 LrCs~C~~~l~~p--v~l~~CeH~fCs~Ci~~~~~~---~CPvC~~Paw~q 53 (65)
T PF14835_consen 8 LRCSICFDILKEP--VCLGGCEHIFCSSCIRDCIGS---ECPVCHTPAWIQ 53 (65)
T ss_dssp TS-SSS-S--SS---B---SSS--B-TTTGGGGTTT---B-SSS--B-S-S
T ss_pred cCCcHHHHHhcCC--ceeccCccHHHHHHhHHhcCC---CCCCcCChHHHH
Confidence 6799999987654 555679999999999885543 399999877554
No 55
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=96.96 E-value=0.00035 Score=50.92 Aligned_cols=43 Identities=23% Similarity=0.532 Sum_probs=29.3
Q ss_pred CCCccceecccccCCCceEEeCCCCccchhhHHHHHhh-CCCCCCc
Q 022509 80 TSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTS-WRTFCPV 124 (296)
Q Consensus 80 ~~~~CaICLe~f~~~d~vr~LpCgH~FH~~CId~WL~~-~~~tCPl 124 (296)
....|+|.+..|+ +.|+...|||+|-++.|.+|+++ ....||+
T Consensus 10 ~~~~CPiT~~~~~--~PV~s~~C~H~fek~aI~~~i~~~~~~~CPv 53 (57)
T PF11789_consen 10 ISLKCPITLQPFE--DPVKSKKCGHTFEKEAILQYIQRNGSKRCPV 53 (57)
T ss_dssp --SB-TTTSSB-S--SEEEESSS--EEEHHHHHHHCTTTS-EE-SC
T ss_pred eccCCCCcCChhh--CCcCcCCCCCeecHHHHHHHHHhcCCCCCCC
Confidence 4589999999987 45777789999999999999943 3456998
No 56
>KOG0801 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.90 E-value=0.00035 Score=61.02 Aligned_cols=29 Identities=38% Similarity=0.874 Sum_probs=27.2
Q ss_pred CCCccceecccccCCCceEEeCCCCccch
Q 022509 80 TSRTCAICLEDYSVGEKLRILPCRHKFHA 108 (296)
Q Consensus 80 ~~~~CaICLe~f~~~d~vr~LpCgH~FH~ 108 (296)
+..+|.||||+++.+|.+..|||-.+||+
T Consensus 176 dkGECvICLEdL~~GdtIARLPCLCIYHK 204 (205)
T KOG0801|consen 176 DKGECVICLEDLEAGDTIARLPCLCIYHK 204 (205)
T ss_pred cCCcEEEEhhhccCCCceeccceEEEeec
Confidence 45899999999999999999999999997
No 57
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.81 E-value=0.00036 Score=67.45 Aligned_cols=48 Identities=25% Similarity=0.588 Sum_probs=35.2
Q ss_pred cCCCCCccceecccccCCCceEEeCCCCccchhhHHHHHhhCCCCCCccccccCC
Q 022509 77 DNCTSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDART 131 (296)
Q Consensus 77 ~~~~~~~CaICLe~f~~~d~vr~LpCgH~FH~~CId~WL~~~~~tCPlCR~~i~~ 131 (296)
+......|.||+++.++ ...+||||+-+ |..--.. ...||+||+.+..
T Consensus 301 ~~~~p~lcVVcl~e~~~---~~fvpcGh~cc--ct~cs~~--l~~CPvCR~rI~~ 348 (355)
T KOG1571|consen 301 ELPQPDLCVVCLDEPKS---AVFVPCGHVCC--CTLCSKH--LPQCPVCRQRIRL 348 (355)
T ss_pred ccCCCCceEEecCCccc---eeeecCCcEEE--chHHHhh--CCCCchhHHHHHH
Confidence 34457899999999765 47789999965 6555333 4559999987753
No 58
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=96.78 E-value=0.00051 Score=58.22 Aligned_cols=36 Identities=19% Similarity=0.468 Sum_probs=31.0
Q ss_pred CCccceecccccCCCceEEeCCC------CccchhhHHHHHh
Q 022509 81 SRTCAICLEDYSVGEKLRILPCR------HKFHAFCVDSWLT 116 (296)
Q Consensus 81 ~~~CaICLe~f~~~d~vr~LpCg------H~FH~~CId~WL~ 116 (296)
..+|.||++.+..++.|..++|| |.||.+|+++|-+
T Consensus 26 ~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw~~ 67 (134)
T PF05883_consen 26 TVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRWRR 67 (134)
T ss_pred CeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHHHh
Confidence 57999999999986777888885 8899999999943
No 59
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.76 E-value=0.00077 Score=66.65 Aligned_cols=49 Identities=27% Similarity=0.626 Sum_probs=41.5
Q ss_pred CCCCccceecccccCCCceEEeCCCCccchhhHHHHHhhCCCCCCccccccCC
Q 022509 79 CTSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDART 131 (296)
Q Consensus 79 ~~~~~CaICLe~f~~~d~vr~LpCgH~FH~~CId~WL~~~~~tCPlCR~~i~~ 131 (296)
..+.+|.||++-+... ..+||||.|+..||++-+.. .+.||.||..+..
T Consensus 82 ~sef~c~vc~~~l~~p---v~tpcghs~c~~Cl~r~ld~-~~~cp~Cr~~l~e 130 (398)
T KOG4159|consen 82 RSEFECCVCSRALYPP---VVTPCGHSFCLECLDRSLDQ-ETECPLCRDELVE 130 (398)
T ss_pred cchhhhhhhHhhcCCC---ccccccccccHHHHHHHhcc-CCCCccccccccc
Confidence 3568999998887655 67799999999999997775 6779999998886
No 60
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=96.58 E-value=0.0013 Score=64.79 Aligned_cols=56 Identities=25% Similarity=0.525 Sum_probs=45.3
Q ss_pred CCCCCccceecccccCCCceEEeCCCCccchhhHHHHHhhCCCCCCccccccCCCCCCC
Q 022509 78 NCTSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDARTSTGEP 136 (296)
Q Consensus 78 ~~~~~~CaICLe~f~~~d~vr~LpCgH~FH~~CId~WL~~~~~tCPlCR~~i~~~~~~~ 136 (296)
.+.+..|++|...+.+.- ..+.|||.||..|+..|+.. +..||.|+..+......+
T Consensus 18 ~~~~l~C~~C~~vl~~p~--~~~~cgh~fC~~C~~~~~~~-~~~cp~~~~~~~~~~~~~ 73 (391)
T KOG0297|consen 18 LDENLLCPICMSVLRDPV--QTTTCGHRFCAGCLLESLSN-HQKCPVCRQELTQAEELP 73 (391)
T ss_pred CcccccCccccccccCCC--CCCCCCCcccccccchhhcc-CcCCcccccccchhhccC
Confidence 345689999999987662 33579999999999999998 666999998877666554
No 61
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=96.50 E-value=0.0011 Score=46.84 Aligned_cols=45 Identities=24% Similarity=0.630 Sum_probs=23.0
Q ss_pred cceecccccCCCceEEeC--CCCccchhhHHHHHhhCCCCCCcccccc
Q 022509 84 CAICLEDYSVGEKLRILP--CRHKFHAFCVDSWLTSWRTFCPVCKRDA 129 (296)
Q Consensus 84 CaICLe~f~~~d~vr~Lp--CgH~FH~~CId~WL~~~~~tCPlCR~~i 129 (296)
|++|.+++...+ ...+| ||+.++..|...-++.....||-||+++
T Consensus 1 cp~C~e~~d~~d-~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDETD-KDFYPCECGFQICRFCYHDILENEGGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CCC-TT--SSTTS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred CCCcccccccCC-CccccCcCCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence 789999995443 24455 7999999998888775567799999875
No 62
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=96.49 E-value=0.0011 Score=66.99 Aligned_cols=54 Identities=24% Similarity=0.609 Sum_probs=41.8
Q ss_pred ccCCCCCccceecccccCCCceEEeCCCCccchhhHHHHHhh----CCCCCCccccccCCC
Q 022509 76 EDNCTSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTS----WRTFCPVCKRDARTS 132 (296)
Q Consensus 76 ~~~~~~~~CaICLe~f~~~d~vr~LpCgH~FH~~CId~WL~~----~~~tCPlCR~~i~~~ 132 (296)
+++.+..+|.+|-++-+ ...+..|.|.||+.||++++.. .+.+||+|-..+...
T Consensus 531 ~enk~~~~C~lc~d~ae---d~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiD 588 (791)
T KOG1002|consen 531 DENKGEVECGLCHDPAE---DYIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSID 588 (791)
T ss_pred ccccCceeecccCChhh---hhHhhhhhHHHHHHHHHHHHHhhhcccCCCCcccccccccc
Confidence 44567789999998844 3356779999999999888763 457899997766654
No 63
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.47 E-value=0.0019 Score=63.56 Aligned_cols=38 Identities=29% Similarity=0.690 Sum_probs=34.0
Q ss_pred CCCccceecccccCCCceEEeCCCCccchhhHHHHHhh
Q 022509 80 TSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTS 117 (296)
Q Consensus 80 ~~~~CaICLe~f~~~d~vr~LpCgH~FH~~CId~WL~~ 117 (296)
.-..|.||+++..-.+.+..|||+|+||+.|++..+..
T Consensus 183 slf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~~ 220 (445)
T KOG1814|consen 183 SLFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFTI 220 (445)
T ss_pred hcccceeeehhhcCcceeeecccchHHHHHHHHHHHHH
Confidence 45899999999877788999999999999999999874
No 64
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=96.43 E-value=0.002 Score=45.04 Aligned_cols=41 Identities=37% Similarity=0.869 Sum_probs=27.6
Q ss_pred cceecccccCCCceEEeCCC-----CccchhhHHHHHhh-CCCCCCcc
Q 022509 84 CAICLEDYSVGEKLRILPCR-----HKFHAFCVDSWLTS-WRTFCPVC 125 (296)
Q Consensus 84 CaICLe~f~~~d~vr~LpCg-----H~FH~~CId~WL~~-~~~tCPlC 125 (296)
|-||+++-.+++ .-+.||+ -..|.+|+++|+.. .+.+|++|
T Consensus 1 CrIC~~~~~~~~-~li~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDE-PLISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS--EE-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred CeEeCCcCCCCC-ceecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 679999877665 3456763 36899999999984 34569987
No 65
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=96.28 E-value=0.0018 Score=51.23 Aligned_cols=32 Identities=25% Similarity=0.685 Sum_probs=27.7
Q ss_pred CCCccceecccccCCCceEEeCCCCccchhhHH
Q 022509 80 TSRTCAICLEDYSVGEKLRILPCRHKFHAFCVD 112 (296)
Q Consensus 80 ~~~~CaICLe~f~~~d~vr~LpCgH~FH~~CId 112 (296)
.+..|++|-..+.. ....+.||||+||..|++
T Consensus 77 ~~~~C~vC~k~l~~-~~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 77 ESTKCSVCGKPLGN-SVFVVFPCGHVVHYSCIK 108 (109)
T ss_pred CCCCccCcCCcCCC-ceEEEeCCCeEEeccccc
Confidence 35789999999977 567888999999999975
No 66
>PHA02862 5L protein; Provisional
Probab=96.27 E-value=0.0031 Score=54.19 Aligned_cols=50 Identities=22% Similarity=0.474 Sum_probs=36.9
Q ss_pred CCccceecccccCCCceEEeCCC-----CccchhhHHHHHhh-CCCCCCccccccCCCCC
Q 022509 81 SRTCAICLEDYSVGEKLRILPCR-----HKFHAFCVDSWLTS-WRTFCPVCKRDARTSTG 134 (296)
Q Consensus 81 ~~~CaICLe~f~~~d~vr~LpCg-----H~FH~~CId~WL~~-~~~tCPlCR~~i~~~~~ 134 (296)
++.|=||+++-++ . .-||+ ..-|.+|+.+|++. ++..|++|+.++.-...
T Consensus 2 ~diCWIC~~~~~e--~--~~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~Ik~~ 57 (156)
T PHA02862 2 SDICWICNDVCDE--R--NNFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYNIKKT 57 (156)
T ss_pred CCEEEEecCcCCC--C--cccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEEEEEc
Confidence 4689999998432 2 35763 45899999999984 45679999988765443
No 67
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=95.93 E-value=0.0069 Score=52.81 Aligned_cols=52 Identities=19% Similarity=0.585 Sum_probs=37.8
Q ss_pred CCCccceecccccCCCceEEeCC--CC---ccchhhHHHHHhh-CCCCCCccccccCCCCCC
Q 022509 80 TSRTCAICLEDYSVGEKLRILPC--RH---KFHAFCVDSWLTS-WRTFCPVCKRDARTSTGE 135 (296)
Q Consensus 80 ~~~~CaICLe~f~~~d~vr~LpC--gH---~FH~~CId~WL~~-~~~tCPlCR~~i~~~~~~ 135 (296)
.+..|=||.++.. +. .-|| .. .-|.+|+++|+.. +...|++|+.++......
T Consensus 7 ~~~~CRIC~~~~~--~~--~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~i~~~~ 64 (162)
T PHA02825 7 MDKCCWICKDEYD--VV--TNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYNIKKNY 64 (162)
T ss_pred CCCeeEecCCCCC--Cc--cCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEEEEEec
Confidence 4689999999843 22 2475 33 4699999999985 345699999887665433
No 68
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.70 E-value=0.0059 Score=57.33 Aligned_cols=48 Identities=35% Similarity=0.802 Sum_probs=41.4
Q ss_pred CccceecccccCCCc---eEEeCCCCccchhhHHHHHhhCCCCCCcccccc
Q 022509 82 RTCAICLEDYSVGEK---LRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDA 129 (296)
Q Consensus 82 ~~CaICLe~f~~~d~---vr~LpCgH~FH~~CId~WL~~~~~tCPlCR~~i 129 (296)
.+|-||-++|...+. -++|.|||.|+..|+...+......||.||...
T Consensus 4 ~~c~~c~~~~s~~~~~~~p~~l~c~h~~c~~c~~~l~~~~~i~cpfcR~~~ 54 (296)
T KOG4185|consen 4 PECEICNEDYSSEDGDHIPRVLKCGHTICQNCASKLLGNSRILCPFCRETT 54 (296)
T ss_pred CceeecCccccccCcccCCcccccCceehHhHHHHHhcCceeeccCCCCcc
Confidence 579999999988743 367889999999999999887777799999885
No 69
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.61 E-value=0.038 Score=52.07 Aligned_cols=50 Identities=20% Similarity=0.499 Sum_probs=37.9
Q ss_pred CCCccceecccccCCCceEEeCCCCccchhhHHHHHhh-CCCCCCccccccCC
Q 022509 80 TSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTS-WRTFCPVCKRDART 131 (296)
Q Consensus 80 ~~~~CaICLe~f~~~d~vr~LpCgH~FH~~CId~WL~~-~~~tCPlCR~~i~~ 131 (296)
.+.+|++|-+.-... ....+|||+||--||..=+.- -..+||.|-.++.+
T Consensus 238 ~~~~C~~Cg~~PtiP--~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~~ 288 (298)
T KOG2879|consen 238 SDTECPVCGEPPTIP--HVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVEP 288 (298)
T ss_pred CCceeeccCCCCCCC--eeeccccceeehhhhhhhhcchhhcccCccCCCCcc
Confidence 468999999885544 456679999999999886553 13569999776654
No 70
>PHA03096 p28-like protein; Provisional
Probab=95.47 E-value=0.0069 Score=57.51 Aligned_cols=46 Identities=33% Similarity=0.739 Sum_probs=33.2
Q ss_pred CccceecccccCCC----ceEEeC-CCCccchhhHHHHHhhC--CCCCCcccc
Q 022509 82 RTCAICLEDYSVGE----KLRILP-CRHKFHAFCVDSWLTSW--RTFCPVCKR 127 (296)
Q Consensus 82 ~~CaICLe~f~~~d----~vr~Lp-CgH~FH~~CId~WL~~~--~~tCPlCR~ 127 (296)
..|.||+|...... .-..|+ |.|.|+..|++.|.... +..||.||.
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~~ 231 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENRR 231 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhhcccCccccc
Confidence 78999999977542 334666 99999999999998752 223554443
No 71
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.39 E-value=0.0011 Score=64.93 Aligned_cols=52 Identities=23% Similarity=0.587 Sum_probs=45.7
Q ss_pred CCccceecccccCC-CceEEeCCCCccchhhHHHHHhhCCCCCCccccccCCCC
Q 022509 81 SRTCAICLEDYSVG-EKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDARTST 133 (296)
Q Consensus 81 ~~~CaICLe~f~~~-d~vr~LpCgH~FH~~CId~WL~~~~~tCPlCR~~i~~~~ 133 (296)
...|+||.+.++.. +++..+-|||.+|.+||.+||.. +..||.||+.+....
T Consensus 196 v~sl~I~~~slK~~y~k~~~~~~g~~~~~~kL~k~L~~-~~kl~~~~rel~~~~ 248 (465)
T KOG0827|consen 196 VGSLSICFESLKQNYDKISAIVCGHIYHHGKLSKWLAT-KRKLPSCRRELPKNG 248 (465)
T ss_pred HhhhHhhHHHHHHHHHHHHHHhhcccchhhHHHHHHHH-HHHhHHHHhhhhhhh
Confidence 47899999999988 78888889999999999999998 566999999887644
No 72
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=95.32 E-value=0.012 Score=57.02 Aligned_cols=60 Identities=23% Similarity=0.522 Sum_probs=41.0
Q ss_pred hCCcceeecccccCCCCCccceecccccCCCceEEeCCCCccchhhHHHH--HhhCCCCCCccccc
Q 022509 65 AMPSLIFTAVVEDNCTSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSW--LTSWRTFCPVCKRD 128 (296)
Q Consensus 65 ~lp~~~~~~~~~~~~~~~~CaICLe~f~~~d~vr~LpCgH~FH~~CId~W--L~~~~~tCPlCR~~ 128 (296)
.-|.......++.+.+...|.||-+... -+.++||+|..|..|.-.. |-. +..||+||..
T Consensus 45 aEPnlttsSaddtDEen~~C~ICA~~~T---Ys~~~PC~H~~CH~Ca~RlRALY~-~K~C~~CrTE 106 (493)
T COG5236 45 AEPNLTTSSADDTDEENMNCQICAGSTT---YSARYPCGHQICHACAVRLRALYM-QKGCPLCRTE 106 (493)
T ss_pred cCCccccccccccccccceeEEecCCce---EEEeccCCchHHHHHHHHHHHHHh-ccCCCccccc
Confidence 3344444444445556789999998865 3478999999999996443 222 3459999974
No 73
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=95.17 E-value=0.011 Score=62.76 Aligned_cols=48 Identities=29% Similarity=0.668 Sum_probs=36.7
Q ss_pred CCCccceecccccCCCce-EEeCCCCccchhhHHHHHhhCC------CCCCcccc
Q 022509 80 TSRTCAICLEDYSVGEKL-RILPCRHKFHAFCVDSWLTSWR------TFCPVCKR 127 (296)
Q Consensus 80 ~~~~CaICLe~f~~~d~v-r~LpCgH~FH~~CId~WL~~~~------~tCPlCR~ 127 (296)
+..+|.||.|.+...+.+ -.-.|-|+||..||..|-.... -.||.|+.
T Consensus 190 ~~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqs 244 (950)
T KOG1952|consen 190 RKYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQS 244 (950)
T ss_pred CceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccc
Confidence 568999999999876543 2333899999999999987411 13999984
No 74
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=95.13 E-value=0.0072 Score=54.58 Aligned_cols=44 Identities=27% Similarity=0.628 Sum_probs=36.2
Q ss_pred CccceecccccCCCceEEeCCCCccchhhHHHHHhhCCCCCCcccccc
Q 022509 82 RTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDA 129 (296)
Q Consensus 82 ~~CaICLe~f~~~d~vr~LpCgH~FH~~CId~WL~~~~~tCPlCR~~i 129 (296)
..|.||-++|+.. .++.|||.||..|...-++. ...|-+|-...
T Consensus 197 F~C~iCKkdy~sp---vvt~CGH~FC~~Cai~~y~k-g~~C~~Cgk~t 240 (259)
T COG5152 197 FLCGICKKDYESP---VVTECGHSFCSLCAIRKYQK-GDECGVCGKAT 240 (259)
T ss_pred eeehhchhhccch---hhhhcchhHHHHHHHHHhcc-CCcceecchhh
Confidence 5899999999876 56779999999998887776 45699996543
No 75
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.11 E-value=0.019 Score=53.49 Aligned_cols=52 Identities=13% Similarity=0.276 Sum_probs=44.2
Q ss_pred CCccceecccccCCCceEEeC-CCCccchhhHHHHHhhCCCCCCccccccCCCC
Q 022509 81 SRTCAICLEDYSVGEKLRILP-CRHKFHAFCVDSWLTSWRTFCPVCKRDARTST 133 (296)
Q Consensus 81 ~~~CaICLe~f~~~d~vr~Lp-CgH~FH~~CId~WL~~~~~tCPlCR~~i~~~~ 133 (296)
...|+||.+.+.+.-.+.+|. |||+|..+|++..+.. ...||+|-.++.+..
T Consensus 221 ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~-D~v~pv~d~plkdrd 273 (303)
T KOG3039|consen 221 RYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRK-DMVDPVTDKPLKDRD 273 (303)
T ss_pred ceecccchhhhcCccceEEeccCCcEeeHHHHHHhccc-cccccCCCCcCcccc
Confidence 378999999999988888885 9999999999999987 555999977765543
No 76
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=94.95 E-value=0.016 Score=56.11 Aligned_cols=54 Identities=22% Similarity=0.581 Sum_probs=40.0
Q ss_pred CCCccceecccccCCCce-EEeCCCCccchhhHHHHHhhCCCCCCccccccCCCC
Q 022509 80 TSRTCAICLEDYSVGEKL-RILPCRHKFHAFCVDSWLTSWRTFCPVCKRDARTST 133 (296)
Q Consensus 80 ~~~~CaICLe~f~~~d~v-r~LpCgH~FH~~CId~WL~~~~~tCPlCR~~i~~~~ 133 (296)
+++.|+.|+|++...|+- .--+||-..|.-|...--+.-+..||-||+.+.+..
T Consensus 13 eed~cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~y~den 67 (480)
T COG5175 13 EEDYCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRKYDDEN 67 (480)
T ss_pred ccccCcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhhccccc
Confidence 345699999999887754 333589888888866655555677999999776543
No 77
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=94.87 E-value=0.013 Score=54.00 Aligned_cols=47 Identities=26% Similarity=0.651 Sum_probs=35.0
Q ss_pred ccceecccccCCCceEEeCCCCccchhhHHHHHhhCCCCCCccccccCCCC
Q 022509 83 TCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDARTST 133 (296)
Q Consensus 83 ~CaICLe~f~~~d~vr~LpCgH~FH~~CId~WL~~~~~tCPlCR~~i~~~~ 133 (296)
.|-.|.-. ..++...++.|+|+||..|...-.. ..||+||+.+....
T Consensus 5 hCn~C~~~-~~~~~f~LTaC~HvfC~~C~k~~~~---~~C~lCkk~ir~i~ 51 (233)
T KOG4739|consen 5 HCNKCFRF-PSQDPFFLTACRHVFCEPCLKASSP---DVCPLCKKSIRIIQ 51 (233)
T ss_pred Eecccccc-CCCCceeeeechhhhhhhhcccCCc---cccccccceeeeee
Confidence 46666544 3378889999999999999876432 25999999866544
No 78
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=94.69 E-value=0.067 Score=51.58 Aligned_cols=46 Identities=22% Similarity=0.397 Sum_probs=34.5
Q ss_pred CCCCccceecccccCCCceEEeCCCCccchhhHHHHHhhCCCCCCcccc
Q 022509 79 CTSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKR 127 (296)
Q Consensus 79 ~~~~~CaICLe~f~~~d~vr~LpCgH~FH~~CId~WL~~~~~tCPlCR~ 127 (296)
.+...|+||+..-.++..+. --|-+||..||-..+.+ ...||+=-.
T Consensus 298 ~~~~~CpvClk~r~Nptvl~--vSGyVfCY~Ci~~Yv~~-~~~CPVT~~ 343 (357)
T KOG0826|consen 298 PDREVCPVCLKKRQNPTVLE--VSGYVFCYPCIFSYVVN-YGHCPVTGY 343 (357)
T ss_pred CccccChhHHhccCCCceEE--ecceEEeHHHHHHHHHh-cCCCCccCC
Confidence 35689999999866553221 25999999999999997 556997543
No 79
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=94.60 E-value=0.021 Score=41.43 Aligned_cols=46 Identities=26% Similarity=0.496 Sum_probs=33.0
Q ss_pred CccceecccccCCCceEEeCCCCccchhhHHHHHhhCCCCCCccccccCCCC
Q 022509 82 RTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDARTST 133 (296)
Q Consensus 82 ~~CaICLe~f~~~d~vr~LpCgH~FH~~CId~WL~~~~~tCPlCR~~i~~~~ 133 (296)
..|..|... +.+-.++||||+.+..|.+.|- -+-||+|-+++...+
T Consensus 8 ~~~~~~~~~---~~~~~~~pCgH~I~~~~f~~~r---YngCPfC~~~~~~~~ 53 (55)
T PF14447_consen 8 QPCVFCGFV---GTKGTVLPCGHLICDNCFPGER---YNGCPFCGTPFEFDD 53 (55)
T ss_pred eeEEEcccc---ccccccccccceeeccccChhh---ccCCCCCCCcccCCC
Confidence 456666554 3344789999999999998862 334999988876543
No 80
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.59 E-value=0.0077 Score=57.15 Aligned_cols=43 Identities=28% Similarity=0.624 Sum_probs=33.2
Q ss_pred CCccceecccccCCCceEEeCCCCc-cchhhHHHHHhhCCCCCCccccccCC
Q 022509 81 SRTCAICLEDYSVGEKLRILPCRHK-FHAFCVDSWLTSWRTFCPVCKRDART 131 (296)
Q Consensus 81 ~~~CaICLe~f~~~d~vr~LpCgH~-FH~~CId~WL~~~~~tCPlCR~~i~~ 131 (296)
...|+||++.-. .+..|+|||. -|.+|-+. ...||+||+.|..
T Consensus 300 ~~LC~ICmDaP~---DCvfLeCGHmVtCt~CGkr-----m~eCPICRqyi~r 343 (350)
T KOG4275|consen 300 RRLCAICMDAPR---DCVFLECGHMVTCTKCGKR-----MNECPICRQYIVR 343 (350)
T ss_pred HHHHHHHhcCCc---ceEEeecCcEEeehhhccc-----cccCchHHHHHHH
Confidence 578999999743 4688999998 67888655 2359999987643
No 81
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=94.38 E-value=0.035 Score=53.07 Aligned_cols=44 Identities=25% Similarity=0.520 Sum_probs=34.4
Q ss_pred CccceecccccCCCceEEeCCCCccchhhHHHHHhhCCCCCCcccc
Q 022509 82 RTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKR 127 (296)
Q Consensus 82 ~~CaICLe~f~~~d~vr~LpCgH~FH~~CId~WL~~~~~tCPlCR~ 127 (296)
..|+.|..-+... ++.-.|+|.||++||..-|......||.|.+
T Consensus 275 LkCplc~~Llrnp--~kT~cC~~~fc~eci~~al~dsDf~CpnC~r 318 (427)
T COG5222 275 LKCPLCHCLLRNP--MKTPCCGHTFCDECIGTALLDSDFKCPNCSR 318 (427)
T ss_pred ccCcchhhhhhCc--ccCccccchHHHHHHhhhhhhccccCCCccc
Confidence 7899998877655 3332389999999999887765777999954
No 82
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=94.29 E-value=0.014 Score=56.09 Aligned_cols=50 Identities=24% Similarity=0.567 Sum_probs=40.6
Q ss_pred CCCccceecccccCCCceEEeCCCCccchhhHHHHHhhCCCCCCccccccCCC
Q 022509 80 TSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDARTS 132 (296)
Q Consensus 80 ~~~~CaICLe~f~~~d~vr~LpCgH~FH~~CId~WL~~~~~tCPlCR~~i~~~ 132 (296)
....|.+|-.-|.+.. .+..|-|-||+.||-..|+. ..+||+|...|...
T Consensus 14 ~~itC~LC~GYliDAT--TI~eCLHTFCkSCivk~l~~-~~~CP~C~i~ih~t 63 (331)
T KOG2660|consen 14 PHITCRLCGGYLIDAT--TITECLHTFCKSCIVKYLEE-SKYCPTCDIVIHKT 63 (331)
T ss_pred cceehhhccceeecch--hHHHHHHHHHHHHHHHHHHH-hccCCccceeccCc
Confidence 4578999988877653 34469999999999999998 67799998776654
No 83
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.05 E-value=0.016 Score=61.67 Aligned_cols=44 Identities=23% Similarity=0.655 Sum_probs=33.0
Q ss_pred CCccceecccccCCCceEEeCCCCccchhhHHHHHhhCCCCCCccccccC
Q 022509 81 SRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDAR 130 (296)
Q Consensus 81 ~~~CaICLe~f~~~d~vr~LpCgH~FH~~CId~WL~~~~~tCPlCR~~i~ 130 (296)
...|..|-..++.. ..-.-|||.||..|++. +...||-|+.++.
T Consensus 840 ~skCs~C~~~LdlP--~VhF~CgHsyHqhC~e~----~~~~CP~C~~e~~ 883 (933)
T KOG2114|consen 840 VSKCSACEGTLDLP--FVHFLCGHSYHQHCLED----KEDKCPKCLPELR 883 (933)
T ss_pred eeeecccCCccccc--eeeeecccHHHHHhhcc----CcccCCccchhhh
Confidence 36899998887655 34445999999999982 3455999987443
No 84
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.99 E-value=0.023 Score=53.97 Aligned_cols=46 Identities=22% Similarity=0.455 Sum_probs=37.8
Q ss_pred CCccceecccccCCCceEEeCCCCccchhhHHHHHhhCCCCCCccccccC
Q 022509 81 SRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDAR 130 (296)
Q Consensus 81 ~~~CaICLe~f~~~d~vr~LpCgH~FH~~CId~WL~~~~~tCPlCR~~i~ 130 (296)
...|-||...|... .++.|+|.||..|.-.=++. ...|.+|-++..
T Consensus 241 Pf~c~icr~~f~~p---Vvt~c~h~fc~~ca~~~~qk-~~~c~vC~~~t~ 286 (313)
T KOG1813|consen 241 PFKCFICRKYFYRP---VVTKCGHYFCEVCALKPYQK-GEKCYVCSQQTH 286 (313)
T ss_pred Cccccccccccccc---hhhcCCceeehhhhcccccc-CCcceecccccc
Confidence 46799999999876 67789999999998877776 455999977654
No 85
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=93.40 E-value=0.027 Score=38.64 Aligned_cols=42 Identities=24% Similarity=0.634 Sum_probs=23.7
Q ss_pred cceecccccCCCceEEeCCCCccchhhHHHHHhhCCC-CCCcc
Q 022509 84 CAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRT-FCPVC 125 (296)
Q Consensus 84 CaICLe~f~~~d~vr~LpCgH~FH~~CId~WL~~~~~-tCPlC 125 (296)
|.+|.+-...+.....-.|+=.+|..|++.++..... .||.|
T Consensus 1 C~~C~~iv~~G~~C~~~~C~~r~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQGQRCSNRDCNVRLHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp -TTT-SB-SSSEE-SS--S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred CcccchhHeeeccCCCCccCchHHHHHHHHHHhcCCCCCCcCC
Confidence 6778777777754433348888999999999986343 59987
No 86
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.32 E-value=0.044 Score=48.82 Aligned_cols=34 Identities=26% Similarity=0.757 Sum_probs=25.8
Q ss_pred EeCCCCccchhhHHHHHhh----CC------CCCCccccccCCC
Q 022509 99 ILPCRHKFHAFCVDSWLTS----WR------TFCPVCKRDARTS 132 (296)
Q Consensus 99 ~LpCgH~FH~~CId~WL~~----~~------~tCPlCR~~i~~~ 132 (296)
...||.-||.-|+..||+. .+ ..||.|-.++..+
T Consensus 187 N~qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~PialK 230 (234)
T KOG3268|consen 187 NIQCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIALK 230 (234)
T ss_pred ccccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCcceee
Confidence 4459999999999999974 11 2399998877543
No 87
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=93.13 E-value=0.038 Score=58.24 Aligned_cols=48 Identities=23% Similarity=0.584 Sum_probs=38.4
Q ss_pred CccceecccccCCCceEEeCCCCccchhhHHHHHhhCC-CCCCccccccCCCC
Q 022509 82 RTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWR-TFCPVCKRDARTST 133 (296)
Q Consensus 82 ~~CaICLe~f~~~d~vr~LpCgH~FH~~CId~WL~~~~-~tCPlCR~~i~~~~ 133 (296)
..|.||++ .+...+.+|+|.||.+|+..-++... ..||+||..+....
T Consensus 455 ~~c~ic~~----~~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~~~ 503 (674)
T KOG1001|consen 455 HWCHICCD----LDSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLKEKK 503 (674)
T ss_pred cccccccc----cccceeecccchHHHHHHHhccccccCCCCcHHHHHHHHHH
Confidence 79999999 45667888999999999998877423 34999998766544
No 88
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=92.68 E-value=0.053 Score=51.34 Aligned_cols=47 Identities=26% Similarity=0.636 Sum_probs=39.2
Q ss_pred CCCccceecccccCCC-ceEEeCCCCccchhhHHHHHhhCCCCCCcccc
Q 022509 80 TSRTCAICLEDYSVGE-KLRILPCRHKFHAFCVDSWLTSWRTFCPVCKR 127 (296)
Q Consensus 80 ~~~~CaICLe~f~~~d-~vr~LpCgH~FH~~CId~WL~~~~~tCPlCR~ 127 (296)
....|+||.+.+.... .+..++|||.-|..|++.-...+ -+||+|.+
T Consensus 157 ~~~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~~-y~CP~C~~ 204 (276)
T KOG1940|consen 157 SEFNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICEG-YTCPICSK 204 (276)
T ss_pred ccCCCchhHHHhccccccCCccCcccchHHHHHHHHhccC-CCCCcccc
Confidence 3456999999987764 56788999999999999988875 77999987
No 89
>PF04641 Rtf2: Rtf2 RING-finger
Probab=92.65 E-value=0.12 Score=48.22 Aligned_cols=52 Identities=19% Similarity=0.415 Sum_probs=40.2
Q ss_pred CCCCccceecccccCCCceEEe-CCCCccchhhHHHHHhhCCCCCCccccccCCC
Q 022509 79 CTSRTCAICLEDYSVGEKLRIL-PCRHKFHAFCVDSWLTSWRTFCPVCKRDARTS 132 (296)
Q Consensus 79 ~~~~~CaICLe~f~~~d~vr~L-pCgH~FH~~CId~WL~~~~~tCPlCR~~i~~~ 132 (296)
.....|+|...+|........| +|||+|-..+|++- .. ...||+|-.++...
T Consensus 111 ~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~-k~-~~~Cp~c~~~f~~~ 163 (260)
T PF04641_consen 111 EGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKEL-KK-SKKCPVCGKPFTEE 163 (260)
T ss_pred CceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhh-cc-cccccccCCccccC
Confidence 4568999999999766555444 79999999999997 32 34599998776644
No 90
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=92.38 E-value=0.19 Score=49.27 Aligned_cols=28 Identities=29% Similarity=0.815 Sum_probs=21.5
Q ss_pred CCCccchhhHHHHHhh------------CCCCCCcccccc
Q 022509 102 CRHKFHAFCVDSWLTS------------WRTFCPVCKRDA 129 (296)
Q Consensus 102 CgH~FH~~CId~WL~~------------~~~tCPlCR~~i 129 (296)
|.-.+|.+|+.+|+.. ++..||+||+..
T Consensus 311 CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~F 350 (358)
T PF10272_consen 311 CRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKF 350 (358)
T ss_pred ccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccc
Confidence 5566889999999864 244599999874
No 91
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=91.90 E-value=0.17 Score=36.61 Aligned_cols=34 Identities=21% Similarity=0.694 Sum_probs=28.8
Q ss_pred CCCccceecccccCCCceEEeC-CCCccchhhHHH
Q 022509 80 TSRTCAICLEDYSVGEKLRILP-CRHKFHAFCVDS 113 (296)
Q Consensus 80 ~~~~CaICLe~f~~~d~vr~Lp-CgH~FH~~CId~ 113 (296)
....|.+|-+.|++++.+.+-| ||=.+|++|.+.
T Consensus 4 ~~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~ 38 (54)
T PF14446_consen 4 EGCKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEK 38 (54)
T ss_pred cCccChhhCCcccCCCCEEECCCCCCcccHHHHhh
Confidence 3578999999999887777777 999999999554
No 92
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.53 E-value=0.081 Score=56.69 Aligned_cols=35 Identities=23% Similarity=0.585 Sum_probs=28.5
Q ss_pred CCCccceecccccCCCceEEeCCCCccchhhHHHHH
Q 022509 80 TSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWL 115 (296)
Q Consensus 80 ~~~~CaICLe~f~~~d~vr~LpCgH~FH~~CId~WL 115 (296)
.++.|.+|.-.+... .-.+.||||.||++|+.+=.
T Consensus 816 p~d~C~~C~~~ll~~-pF~vf~CgH~FH~~Cl~~~v 850 (911)
T KOG2034|consen 816 PQDSCDHCGRPLLIK-PFYVFPCGHCFHRDCLIRHV 850 (911)
T ss_pred CccchHHhcchhhcC-cceeeeccchHHHHHHHHHH
Confidence 358999999888765 56778999999999997644
No 93
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.47 E-value=0.13 Score=50.16 Aligned_cols=49 Identities=22% Similarity=0.458 Sum_probs=39.3
Q ss_pred CCCCccceecccccCCCceEEeCCCCccchhhHHHHHhhCCCCCCccccccCC
Q 022509 79 CTSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDART 131 (296)
Q Consensus 79 ~~~~~CaICLe~f~~~d~vr~LpCgH~FH~~CId~WL~~~~~tCPlCR~~i~~ 131 (296)
.++..|+||...--.. ...||+|.=|.+||.+-|.+ ...|=.|+..+.+
T Consensus 420 sEd~lCpICyA~pi~A---vf~PC~H~SC~~CI~qHlmN-~k~CFfCktTv~~ 468 (489)
T KOG4692|consen 420 SEDNLCPICYAGPINA---VFAPCSHRSCYGCITQHLMN-CKRCFFCKTTVID 468 (489)
T ss_pred cccccCcceecccchh---hccCCCCchHHHHHHHHHhc-CCeeeEecceeee
Confidence 4678999998763322 56789999999999999987 4559999987764
No 94
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=91.41 E-value=0.16 Score=48.20 Aligned_cols=52 Identities=29% Similarity=0.526 Sum_probs=39.0
Q ss_pred ccceecccccCC-C-ceEEeCCCCccchhhHHHHHhhCCCCCCccccccCCCCC
Q 022509 83 TCAICLEDYSVG-E-KLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDARTSTG 134 (296)
Q Consensus 83 ~CaICLe~f~~~-d-~vr~LpCgH~FH~~CId~WL~~~~~tCPlCR~~i~~~~~ 134 (296)
.|++|..+---+ + ++.+=+|+|-.|+.|++..+..+...||.|...+....-
T Consensus 2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~~g~~~CpeC~~iLRk~nf 55 (300)
T KOG3800|consen 2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFSLGPAQCPECMVILRKNNF 55 (300)
T ss_pred CCcccccceecCccceeeeccccchHHHHHHHHHHhcCCCCCCcccchhhhccc
Confidence 589998764333 2 333347999999999999999888889999776655443
No 95
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=90.72 E-value=0.14 Score=49.12 Aligned_cols=44 Identities=23% Similarity=0.539 Sum_probs=34.3
Q ss_pred CCCccceecccccCCCceEEeCC--CCccchhhHHHHHhhCCCCCCccccccCC
Q 022509 80 TSRTCAICLEDYSVGEKLRILPC--RHKFHAFCVDSWLTSWRTFCPVCKRDART 131 (296)
Q Consensus 80 ~~~~CaICLe~f~~~d~vr~LpC--gH~FH~~CId~WL~~~~~tCPlCR~~i~~ 131 (296)
+-.+|+||.+.+... +..| ||+-|..|-.+- .+.||.||.++..
T Consensus 47 ~lleCPvC~~~l~~P----i~QC~nGHlaCssC~~~~----~~~CP~Cr~~~g~ 92 (299)
T KOG3002|consen 47 DLLDCPVCFNPLSPP----IFQCDNGHLACSSCRTKV----SNKCPTCRLPIGN 92 (299)
T ss_pred hhccCchhhccCccc----ceecCCCcEehhhhhhhh----cccCCcccccccc
Confidence 458999999998866 4457 899999997642 4459999988773
No 96
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=90.64 E-value=0.66 Score=45.87 Aligned_cols=46 Identities=20% Similarity=0.293 Sum_probs=39.8
Q ss_pred CCccceecccccCCCceEEeCCCCccchhhHHHHHhhCC--CCCCccc
Q 022509 81 SRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWR--TFCPVCK 126 (296)
Q Consensus 81 ~~~CaICLe~f~~~d~vr~LpCgH~FH~~CId~WL~~~~--~tCPlCR 126 (296)
-..|+|=.++=.+...-..|.|||+..++-+.+..+.+. ..||.|=
T Consensus 334 vF~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng~~sfKCPYCP 381 (394)
T KOG2817|consen 334 VFICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNGSQSFKCPYCP 381 (394)
T ss_pred eeecccchhhccCCCCCeeeeccceecHHHHHHHhhCCCeeeeCCCCC
Confidence 478999888887777888999999999999999888766 5699993
No 97
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=90.11 E-value=0.11 Score=49.92 Aligned_cols=41 Identities=32% Similarity=0.755 Sum_probs=26.4
Q ss_pred CccceecccccCCCceEEeCCCCccchhhHHHHHhhCCCCCCcccc
Q 022509 82 RTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKR 127 (296)
Q Consensus 82 ~~CaICLe~f~~~d~vr~LpCgH~FH~~CId~WL~~~~~tCPlCR~ 127 (296)
-.|--|--.+.. --|.+||+|+||.+|... .. .+.||.|-.
T Consensus 91 HfCd~Cd~PI~I--YGRmIPCkHvFCl~CAr~--~~-dK~Cp~C~d 131 (389)
T KOG2932|consen 91 HFCDRCDFPIAI--YGRMIPCKHVFCLECARS--DS-DKICPLCDD 131 (389)
T ss_pred EeecccCCccee--eecccccchhhhhhhhhc--Cc-cccCcCccc
Confidence 345556444332 237789999999999765 22 234999854
No 98
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=90.08 E-value=0.13 Score=46.75 Aligned_cols=40 Identities=35% Similarity=0.912 Sum_probs=29.5
Q ss_pred ccceecccccCCCceEEeCCCCc-cchhhHHHHHhhCCCCCCccccccC
Q 022509 83 TCAICLEDYSVGEKLRILPCRHK-FHAFCVDSWLTSWRTFCPVCKRDAR 130 (296)
Q Consensus 83 ~CaICLe~f~~~d~vr~LpCgH~-FH~~CId~WL~~~~~tCPlCR~~i~ 130 (296)
.|-.|.+. .-.|..|||.|. +|..|-+. + ..||+|+....
T Consensus 160 ~Cr~C~~~---~~~VlllPCrHl~lC~~C~~~-~----~~CPiC~~~~~ 200 (207)
T KOG1100|consen 160 SCRKCGER---EATVLLLPCRHLCLCGICDES-L----RICPICRSPKT 200 (207)
T ss_pred cceecCcC---CceEEeecccceEeccccccc-C----ccCCCCcChhh
Confidence 38888776 445888999887 88999765 2 23999987654
No 99
>KOG3053 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.31 E-value=0.18 Score=47.22 Aligned_cols=55 Identities=22% Similarity=0.527 Sum_probs=38.3
Q ss_pred CCCCccceecccccCCCce-EEeCC-----CCccchhhHHHHHhhCC-------CCCCccccccCCCC
Q 022509 79 CTSRTCAICLEDYSVGEKL-RILPC-----RHKFHAFCVDSWLTSWR-------TFCPVCKRDARTST 133 (296)
Q Consensus 79 ~~~~~CaICLe~f~~~d~v-r~LpC-----gH~FH~~CId~WL~~~~-------~tCPlCR~~i~~~~ 133 (296)
..+..|=||++.=+++..- =+-|| .|--|..|+..|+.+++ ..||-|+.++...-
T Consensus 18 e~eR~CWiCF~TdeDn~~a~WV~PCrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEYiiv~ 85 (293)
T KOG3053|consen 18 ELERCCWICFATDEDNRLAAWVHPCRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEYIIVF 85 (293)
T ss_pred ccceeEEEEeccCcccchhhhcccccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcchheeec
Confidence 3568999999875544221 23465 48899999999997522 35999998765543
No 100
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=89.06 E-value=0.22 Score=52.79 Aligned_cols=25 Identities=28% Similarity=0.663 Sum_probs=20.6
Q ss_pred EeCCCCccchhhHHHHHhhCCCCCCc
Q 022509 99 ILPCRHKFHAFCVDSWLTSWRTFCPV 124 (296)
Q Consensus 99 ~LpCgH~FH~~CId~WL~~~~~tCPl 124 (296)
...|+|+.|..|..+|++.+. .||.
T Consensus 1045 Cg~C~Hv~H~sc~~eWf~~gd-~Cps 1069 (1081)
T KOG0309|consen 1045 CGTCGHVGHTSCMMEWFRTGD-VCPS 1069 (1081)
T ss_pred hccccccccHHHHHHHHhcCC-cCCC
Confidence 445999999999999999854 4874
No 101
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=88.99 E-value=0.22 Score=46.44 Aligned_cols=48 Identities=31% Similarity=0.781 Sum_probs=38.2
Q ss_pred CCCccceecccccCCCceEEe--C-CCCccchhhHHHHHhhCCCCCC--cccc
Q 022509 80 TSRTCAICLEDYSVGEKLRIL--P-CRHKFHAFCVDSWLTSWRTFCP--VCKR 127 (296)
Q Consensus 80 ~~~~CaICLe~f~~~d~vr~L--p-CgH~FH~~CId~WL~~~~~tCP--lCR~ 127 (296)
.+..|+||..+-.-+-.+..| | |-|..|..|++.-+..+...|| -|-.
T Consensus 9 ~d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~k 61 (314)
T COG5220 9 EDRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCGK 61 (314)
T ss_pred hcccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHHH
Confidence 457899999885544444444 5 9999999999999999889999 7844
No 102
>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=88.90 E-value=0.21 Score=46.62 Aligned_cols=52 Identities=27% Similarity=0.591 Sum_probs=38.0
Q ss_pred CCccceecccccCCCc-eEEeCCC-----CccchhhHHHHHhh-CCCCCCccccccCCC
Q 022509 81 SRTCAICLEDYSVGEK-LRILPCR-----HKFHAFCVDSWLTS-WRTFCPVCKRDARTS 132 (296)
Q Consensus 81 ~~~CaICLe~f~~~d~-vr~LpCg-----H~FH~~CId~WL~~-~~~tCPlCR~~i~~~ 132 (296)
+..|=||.++...... ..+.||. +..|..|++.|+.. ++..|-+|.......
T Consensus 78 ~~~cRIc~~~~~~~~~~~l~~pC~C~g~l~~vH~~cl~~W~~~~~~~~CeiC~~~~~~~ 136 (323)
T KOG1609|consen 78 GPICRICHEEDEESNGLLLISPCSCKGSLAYVHRSCLEKWFSIKGNITCEICKSFFINV 136 (323)
T ss_pred CCcEEEEecccccccccccccCccccCcHHHHHHHHHHhhhccccCeeeecccccceec
Confidence 4789999998765432 4566762 55899999999983 356699998766554
No 103
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=87.88 E-value=0.59 Score=46.22 Aligned_cols=38 Identities=24% Similarity=0.642 Sum_probs=29.2
Q ss_pred CCCccceecccccCC-CceEEeCCCCccchhhHHHHHhh
Q 022509 80 TSRTCAICLEDYSVG-EKLRILPCRHKFHAFCVDSWLTS 117 (296)
Q Consensus 80 ~~~~CaICLe~f~~~-d~vr~LpCgH~FH~~CId~WL~~ 117 (296)
...+|.||..++... +...++.|+|.|+.+|+.+-++.
T Consensus 145 ~~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~~iev 183 (384)
T KOG1812|consen 145 PKEECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQHIEV 183 (384)
T ss_pred ccccCccCccccccHhhhHHHhcccchhhhHHhHHHhhh
Confidence 357999999554444 44456679999999999988875
No 104
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=87.66 E-value=0.62 Score=40.77 Aligned_cols=36 Identities=28% Similarity=0.518 Sum_probs=22.0
Q ss_pred CCccceecccccCCCc---------eEEeCCCCc-cchhhHHHHHh
Q 022509 81 SRTCAICLEDYSVGEK---------LRILPCRHK-FHAFCVDSWLT 116 (296)
Q Consensus 81 ~~~CaICLe~f~~~d~---------vr~LpCgH~-FH~~CId~WL~ 116 (296)
+..|+||||.--+.-- +|-.-|+-. -|..|+|+.-+
T Consensus 2 d~~CpICme~PHNAVLLlCSS~~kgcRpymc~Ts~rhSNCLdqfkk 47 (162)
T PF07800_consen 2 DVTCPICMEHPHNAVLLLCSSHEKGCRPYMCDTSYRHSNCLDQFKK 47 (162)
T ss_pred CccCceeccCCCceEEEEeccccCCccccccCCccchhHHHHHHHH
Confidence 5789999998543311 111114433 57889999765
No 105
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=87.02 E-value=0.17 Score=52.70 Aligned_cols=44 Identities=34% Similarity=0.631 Sum_probs=32.0
Q ss_pred CCccceecccccCCCce-EEeCCCCccchhhHHHHHhhCCCCCCccccc
Q 022509 81 SRTCAICLEDYSVGEKL-RILPCRHKFHAFCVDSWLTSWRTFCPVCKRD 128 (296)
Q Consensus 81 ~~~CaICLe~f~~~d~v-r~LpCgH~FH~~CId~WL~~~~~tCPlCR~~ 128 (296)
-..|.||+..|-..... +-|-|||..|..|++.... .+|| |+++
T Consensus 11 ~l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~lyn---~scp-~~~D 55 (861)
T KOG3161|consen 11 LLLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLLYN---ASCP-TKRD 55 (861)
T ss_pred HhhchHHHHHHHHHhcCcccccccchHHHHHHHhHhh---ccCC-CCcc
Confidence 36799999888776433 3445999999999988543 3499 7554
No 106
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=86.40 E-value=0.57 Score=50.17 Aligned_cols=54 Identities=22% Similarity=0.564 Sum_probs=39.7
Q ss_pred CCCccceecccccCCCceEEeCCC-----CccchhhHHHHHhh-CCCCCCccccccCCCCC
Q 022509 80 TSRTCAICLEDYSVGEKLRILPCR-----HKFHAFCVDSWLTS-WRTFCPVCKRDARTSTG 134 (296)
Q Consensus 80 ~~~~CaICLe~f~~~d~vr~LpCg-----H~FH~~CId~WL~~-~~~tCPlCR~~i~~~~~ 134 (296)
++..|-||..+=..++.+- -||+ -..|++|+-+|++- +++.|-+|+.++.-.+-
T Consensus 11 d~~~CRICr~e~~~d~pLf-hPCKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~~Fk~I 70 (1175)
T COG5183 11 DKRSCRICRTEDIRDDPLF-HPCKCSGSIKYIHRECLMEWMECSGTKKCDICHYEYKFKDI 70 (1175)
T ss_pred cchhceeecCCCCCCCcCc-ccccccchhHHHHHHHHHHHHhcCCCcceeeecceeeeeee
Confidence 4589999999877666543 3553 23899999999983 35669999988755543
No 107
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=85.97 E-value=0.24 Score=55.15 Aligned_cols=48 Identities=29% Similarity=0.616 Sum_probs=38.5
Q ss_pred CCCCccceecccccCCCceEEeCCCCccchhhHHHHHhhCCCCCCcccccc
Q 022509 79 CTSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDA 129 (296)
Q Consensus 79 ~~~~~CaICLe~f~~~d~vr~LpCgH~FH~~CId~WL~~~~~tCPlCR~~i 129 (296)
.+...|.||++.+.... .+..|||.++..|+..|+.. +..||+|+...
T Consensus 1151 ~~~~~c~ic~dil~~~~--~I~~cgh~~c~~c~~~~l~~-~s~~~~~ksi~ 1198 (1394)
T KOG0298|consen 1151 SGHFVCEICLDILRNQG--GIAGCGHEPCCRCDELWLYA-SSRCPICKSIK 1198 (1394)
T ss_pred hcccchHHHHHHHHhcC--CeeeechhHhhhHHHHHHHH-hccCcchhhhh
Confidence 34579999999988442 34569999999999999998 66799998433
No 108
>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]
Probab=84.51 E-value=0.34 Score=50.23 Aligned_cols=42 Identities=24% Similarity=0.623 Sum_probs=28.4
Q ss_pred CCCccceecc-----cccCCCceEEeCCCCccchhhHHHHHhhCCCCCCcc
Q 022509 80 TSRTCAICLE-----DYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVC 125 (296)
Q Consensus 80 ~~~~CaICLe-----~f~~~d~vr~LpCgH~FH~~CId~WL~~~~~tCPlC 125 (296)
....|.+|-. .|+.....+...|+++||++|++. ....||.|
T Consensus 510 ~gfiCe~Cq~~~iiyPF~~~~~~rC~~C~avfH~~C~~r----~s~~CPrC 556 (580)
T KOG1829|consen 510 KGFICELCQHNDIIYPFETRNTRRCSTCLAVFHKKCLRR----KSPCCPRC 556 (580)
T ss_pred CeeeeeeccCCCcccccccccceeHHHHHHHHHHHHHhc----cCCCCCch
Confidence 3578888832 233333445666999999999766 34449999
No 109
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=83.31 E-value=0.66 Score=47.70 Aligned_cols=49 Identities=33% Similarity=0.824 Sum_probs=39.5
Q ss_pred CCCCccceecccccCCCceEEeCCCCccchhhHHHHHhhCCCCCCccccccCCCCCC
Q 022509 79 CTSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDARTSTGE 135 (296)
Q Consensus 79 ~~~~~CaICLe~f~~~d~vr~LpCgH~FH~~CId~WL~~~~~tCPlCR~~i~~~~~~ 135 (296)
+....|.||++++ ..++.+|. |..|+.+|+.. +..||+|+..+..+...
T Consensus 477 ~~~~~~~~~~~~~----~~~~~~~~---~~~~l~~~~~~-~~~~pl~~~~~~~~~~~ 525 (543)
T KOG0802|consen 477 EPNDVCAICYQEM----SARITPCS---HALCLRKWLYV-QEVCPLCHTYMKEDDFL 525 (543)
T ss_pred cccCcchHHHHHH----Hhcccccc---chhHHHhhhhh-ccccCCCchhhhccccc
Confidence 3468999999998 45777888 99999999998 66799998877654443
No 110
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=82.88 E-value=0.71 Score=49.35 Aligned_cols=52 Identities=19% Similarity=0.237 Sum_probs=38.0
Q ss_pred CCCccceecccccCC-CceEEeC---CCCccchhhHHHHHhh-----CCCCCCccccccCC
Q 022509 80 TSRTCAICLEDYSVG-EKLRILP---CRHKFHAFCVDSWLTS-----WRTFCPVCKRDART 131 (296)
Q Consensus 80 ~~~~CaICLe~f~~~-d~vr~Lp---CgH~FH~~CId~WL~~-----~~~tCPlCR~~i~~ 131 (296)
....|.||.-++... |..-++| |+|.||..||..|+.+ .+..|+.|...|..
T Consensus 95 ~s~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~s 155 (1134)
T KOG0825|consen 95 ESDTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQLEESEKHTAHYFCEECVGS 155 (1134)
T ss_pred cccccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHHHhhccccccccccHHHHhhh
Confidence 457788888887763 3344555 9999999999999874 34558999876543
No 111
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=80.53 E-value=2.4 Score=35.55 Aligned_cols=24 Identities=17% Similarity=0.279 Sum_probs=10.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHh
Q 022509 16 IMAISFISLLAMSAVLATCFFVRR 39 (296)
Q Consensus 16 iliI~fi~Ll~i~~vl~i~~~i~r 39 (296)
+.+|+|+++..+++++++++|+.|
T Consensus 66 i~~Ii~gv~aGvIg~Illi~y~ir 89 (122)
T PF01102_consen 66 IIGIIFGVMAGVIGIILLISYCIR 89 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeehhHHHHHHHHHHHHHHHHHHH
Confidence 444555554444444444333333
No 113
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.34 E-value=0.97 Score=43.31 Aligned_cols=29 Identities=21% Similarity=0.605 Sum_probs=22.4
Q ss_pred CCCccchhhHHHHHhh------------CCCCCCccccccC
Q 022509 102 CRHKFHAFCVDSWLTS------------WRTFCPVCKRDAR 130 (296)
Q Consensus 102 CgH~FH~~CId~WL~~------------~~~tCPlCR~~i~ 130 (296)
|.-.+|.+|+.+|+.. ++.+||+||+..-
T Consensus 325 crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fc 365 (381)
T KOG3899|consen 325 CRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFC 365 (381)
T ss_pred cccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceE
Confidence 5677889999998852 3556999998753
No 114
>PF15050 SCIMP: SCIMP protein
Probab=79.68 E-value=3.9 Score=34.36 Aligned_cols=13 Identities=31% Similarity=0.756 Sum_probs=7.4
Q ss_pred ccchhhhHHHHHH
Q 022509 11 NSAWSIMAISFIS 23 (296)
Q Consensus 11 ~s~w~iliI~fi~ 23 (296)
+..|.|+++++|+
T Consensus 6 ~nFWiiLAVaII~ 18 (133)
T PF15050_consen 6 DNFWIILAVAIIL 18 (133)
T ss_pred hchHHHHHHHHHH
Confidence 4457777666433
No 115
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=79.02 E-value=0.9 Score=40.93 Aligned_cols=42 Identities=31% Similarity=0.798 Sum_probs=29.7
Q ss_pred CCCccceeccc-----ccCCCceEEeCCCCccchhhHHHHHhhCCCCCCcccc
Q 022509 80 TSRTCAICLED-----YSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKR 127 (296)
Q Consensus 80 ~~~~CaICLe~-----f~~~d~vr~LpCgH~FH~~CId~WL~~~~~tCPlCR~ 127 (296)
.+..|.||-++ |+.+..++.-.|+-+||+.|..+ ..||-|.+
T Consensus 151 kGfiCe~C~~~~~IfPF~~~~~~~C~~C~~v~H~~C~~~------~~CpkC~R 197 (202)
T PF13901_consen 151 KGFICEICNSDDIIFPFQIDTTVRCPKCKSVFHKSCFRK------KSCPKCAR 197 (202)
T ss_pred CCCCCccCCCCCCCCCCCCCCeeeCCcCccccchhhcCC------CCCCCcHh
Confidence 46889999753 44444455555999999999773 33999943
No 116
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=77.21 E-value=0.64 Score=49.05 Aligned_cols=48 Identities=33% Similarity=0.723 Sum_probs=37.0
Q ss_pred CCccceecccccCCCceEEeCCCCccchhhHHHHHhhC--CCCCCccccccCC
Q 022509 81 SRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSW--RTFCPVCKRDART 131 (296)
Q Consensus 81 ~~~CaICLe~f~~~d~vr~LpCgH~FH~~CId~WL~~~--~~tCPlCR~~i~~ 131 (296)
..+|.||++.+... ..+.|.|.|+..|+..-+... ...||+|+..+..
T Consensus 21 ~lEc~ic~~~~~~p---~~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~eK 70 (684)
T KOG4362|consen 21 ILECPICLEHVKEP---SLLKCDHIFLKFCLNKLFESKKGPKQCALCKSDIEK 70 (684)
T ss_pred hccCCceeEEeecc---chhhhhHHHHhhhhhceeeccCccccchhhhhhhhh
Confidence 47899999998877 566799999999987755532 3459999965543
No 117
>KOG3005 consensus GIY-YIG type nuclease [General function prediction only]
Probab=74.87 E-value=1.4 Score=41.56 Aligned_cols=48 Identities=21% Similarity=0.414 Sum_probs=34.8
Q ss_pred CccceecccccCCCceEEeC----CCCccchhhHHHHH-hhC-------CCCCCcccccc
Q 022509 82 RTCAICLEDYSVGEKLRILP----CRHKFHAFCVDSWL-TSW-------RTFCPVCKRDA 129 (296)
Q Consensus 82 ~~CaICLe~f~~~d~vr~Lp----CgH~FH~~CId~WL-~~~-------~~tCPlCR~~i 129 (296)
.+|-+|.+++.+.+..+... |+-++|..|+..-+ ..+ ...||.|++.+
T Consensus 183 ~~celc~~ei~e~~~~~a~c~~~~c~~~~h~~CLa~~~~~~e~g~~~p~eg~cp~C~~~~ 242 (276)
T KOG3005|consen 183 VECELCEKEILETDWSRATCPNPDCDSLNHLTCLAEELLEVEPGQLIPLEGMCPKCEKFL 242 (276)
T ss_pred hhhHHHHHHhccccceeccCCCCCCCchhhhhhhhHHHhccCCCceeccCCCCCchhcee
Confidence 69999999996555555442 88899999999833 321 23499998743
No 118
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=74.82 E-value=2.2 Score=36.41 Aligned_cols=52 Identities=23% Similarity=0.444 Sum_probs=34.5
Q ss_pred CCCccceecccccCCCceEEe-CCCCccchhhHHHHHh--hCCCCCCccccccCC
Q 022509 80 TSRTCAICLEDYSVGEKLRIL-PCRHKFHAFCVDSWLT--SWRTFCPVCKRDART 131 (296)
Q Consensus 80 ~~~~CaICLe~f~~~d~vr~L-pCgH~FH~~CId~WL~--~~~~tCPlCR~~i~~ 131 (296)
.-.+|-||.|.-.+..-++-= -||-..+..|-...++ .....||+|+...-.
T Consensus 79 ~lYeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKs 133 (140)
T PF05290_consen 79 KLYECNICKETSAEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKS 133 (140)
T ss_pred CceeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcccCCCCCcccccccc
Confidence 458999999986655222211 1899999887655444 234569999876654
No 119
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=74.78 E-value=1.5 Score=31.09 Aligned_cols=32 Identities=25% Similarity=0.635 Sum_probs=21.2
Q ss_pred eCC-CCccchhhHHHHHhhCCCCCCccccccCCC
Q 022509 100 LPC-RHKFHAFCVDSWLTSWRTFCPVCKRDARTS 132 (296)
Q Consensus 100 LpC-gH~FH~~CId~WL~~~~~tCPlCR~~i~~~ 132 (296)
..| .|..+..|+..-|.+ ...||+|..+++..
T Consensus 16 i~C~dHYLCl~CLt~ml~~-s~~C~iC~~~LPtk 48 (50)
T PF03854_consen 16 IKCSDHYLCLNCLTLMLSR-SDRCPICGKPLPTK 48 (50)
T ss_dssp EE-SS-EEEHHHHHHT-SS-SSEETTTTEE----
T ss_pred eeecchhHHHHHHHHHhcc-ccCCCcccCcCccc
Confidence 348 699999999999887 55699999988753
No 120
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=70.88 E-value=2.5 Score=42.65 Aligned_cols=35 Identities=29% Similarity=0.609 Sum_probs=29.2
Q ss_pred CCCccceecccccCCCceEEeCCCCccchhhHHHHHhh
Q 022509 80 TSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTS 117 (296)
Q Consensus 80 ~~~~CaICLe~f~~~d~vr~LpCgH~FH~~CId~WL~~ 117 (296)
++..|+||..-|++. .+|||+|..|..|...-+.+
T Consensus 3 eelkc~vc~~f~~ep---iil~c~h~lc~~ca~~~~~~ 37 (699)
T KOG4367|consen 3 EELKCPVCGSFYREP---IILPCSHNLCQACARNILVQ 37 (699)
T ss_pred ccccCceehhhccCc---eEeecccHHHHHHHHhhccc
Confidence 357899999998876 89999999999998865553
No 121
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=69.87 E-value=11 Score=36.64 Aligned_cols=45 Identities=18% Similarity=0.263 Sum_probs=35.7
Q ss_pred CCccceecccccCCCceEEeCCCCccchhhHHHHHhhC--CCCCCcc
Q 022509 81 SRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSW--RTFCPVC 125 (296)
Q Consensus 81 ~~~CaICLe~f~~~d~vr~LpCgH~FH~~CId~WL~~~--~~tCPlC 125 (296)
-..|+|=-|.-.+...-..|.|||+.-++-++..-+++ ...||.|
T Consensus 336 ~FiCPVlKe~~t~ENpP~ml~CgHVIskeal~~LS~nG~~~FKCPYC 382 (396)
T COG5109 336 LFICPVLKELCTDENPPVMLECGHVISKEALSVLSQNGVLSFKCPYC 382 (396)
T ss_pred eeeccccHhhhcccCCCeeeeccceeeHHHHHHHhhcCcEEeeCCCC
Confidence 46888877776666677888999999999999987753 2349999
No 122
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=68.93 E-value=2.1 Score=45.80 Aligned_cols=43 Identities=19% Similarity=0.456 Sum_probs=32.7
Q ss_pred CCccceecccccCC----CceEEeCCCCccchhhHHHHHhhCCCCCCcc
Q 022509 81 SRTCAICLEDYSVG----EKLRILPCRHKFHAFCVDSWLTSWRTFCPVC 125 (296)
Q Consensus 81 ~~~CaICLe~f~~~----d~vr~LpCgH~FH~~CId~WL~~~~~tCPlC 125 (296)
+..|.-|.+..-.. +.+.++.|||+||+.|+..-..+.+ |-.|
T Consensus 784 e~rc~~c~~~~l~~~~~~~~~~v~~c~h~yhk~c~~~~~~~~~--~~~~ 830 (846)
T KOG2066|consen 784 EERCSSCFEPNLPSGAAFDSVVVFHCGHMYHKECLMMESLRNA--CNIE 830 (846)
T ss_pred hhhhhhhcccccccCcccceeeEEEccchhhhcccccHHHhcc--cChh
Confidence 46899999886543 4678889999999999987766523 6555
No 123
>PF15048 OSTbeta: Organic solute transporter subunit beta protein
Probab=66.30 E-value=7.8 Score=32.66 Aligned_cols=43 Identities=9% Similarity=0.298 Sum_probs=30.1
Q ss_pred EEEcCCCCccchhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Q 022509 3 IWIIPSFENSAWSIMAISFISLLAMSAVLATCFFVRRHRIRRE 45 (296)
Q Consensus 3 ~~lip~~~~s~w~iliI~fi~Ll~i~~vl~i~~~i~r~r~rr~ 45 (296)
.|.....+.+.|.+-++++.++++++.++++..-+...|.|..
T Consensus 24 lW~fR~ED~tpWNysiL~Ls~vvlvi~~~LLgrsi~ANRnrK~ 66 (125)
T PF15048_consen 24 LWFFRVEDATPWNYSILALSFVVLVISFFLLGRSIQANRNRKM 66 (125)
T ss_pred HHheecCCCCCcchHHHHHHHHHHHHHHHHHHHHhHhcccccc
Confidence 4788888899999887777777766666666665555554443
No 124
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=65.71 E-value=6.7 Score=30.52 Aligned_cols=58 Identities=22% Similarity=0.506 Sum_probs=24.5
Q ss_pred CCCccceecccccCCC--ceEEe--CCCCccchhhHHHHHhhCCCCCCccccccCCCCCCCC
Q 022509 80 TSRTCAICLEDYSVGE--KLRIL--PCRHKFHAFCVDSWLTSWRTFCPVCKRDARTSTGEPP 137 (296)
Q Consensus 80 ~~~~CaICLe~f~~~d--~vr~L--pCgH~FH~~CId~WL~~~~~tCPlCR~~i~~~~~~~~ 137 (296)
....|-||-+++...+ ++-+. .|+--.++.|.+-=.+..+..||-|+..+...++.|.
T Consensus 8 ~~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErkeg~q~CpqCkt~ykr~kgsp~ 69 (80)
T PF14569_consen 8 NGQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKEGNQVCPQCKTRYKRHKGSPR 69 (80)
T ss_dssp SS-B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHTS-SB-TTT--B----TT---
T ss_pred CCcccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhcCcccccccCCCcccccCCCC
Confidence 4678999999975543 23333 3777789999987777767779999988877666543
No 125
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=64.94 E-value=4.4 Score=43.30 Aligned_cols=41 Identities=20% Similarity=0.367 Sum_probs=29.0
Q ss_pred CccceecccccCCCceEEeCCCCccchhhHHHHHhhCCCCCCc
Q 022509 82 RTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPV 124 (296)
Q Consensus 82 ~~CaICLe~f~~~d~vr~LpCgH~FH~~CId~WL~~~~~tCPl 124 (296)
..|.+|-..+..-+ +-.--|||.-|..|+.+|+.. ...||.
T Consensus 780 ~~CtVC~~vi~G~~-~~c~~C~H~gH~sh~~sw~~~-~s~ca~ 820 (839)
T KOG0269|consen 780 AKCTVCDLVIRGVD-VWCQVCGHGGHDSHLKSWFFK-ASPCAK 820 (839)
T ss_pred cCceeecceeeeeE-eecccccccccHHHHHHHHhc-CCCCcc
Confidence 57899977654221 112229999999999999997 445876
No 126
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=64.19 E-value=4.1 Score=40.89 Aligned_cols=37 Identities=30% Similarity=0.617 Sum_probs=31.5
Q ss_pred CCCCccceecccccCCCceEEeCCCCccchhhHHHHHhh
Q 022509 79 CTSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTS 117 (296)
Q Consensus 79 ~~~~~CaICLe~f~~~d~vr~LpCgH~FH~~CId~WL~~ 117 (296)
....+|-||.+.+.. .+..+.|||.|+..|....+++
T Consensus 68 ~~~~~c~ic~~~~~~--~~~~~~c~H~~c~~cw~~yl~~ 104 (444)
T KOG1815|consen 68 KGDVQCGICVESYDG--EIIGLGCGHPFCPPCWTGYLGT 104 (444)
T ss_pred CccccCCcccCCCcc--hhhhcCCCcHHHHHHHHHHhhh
Confidence 356899999999876 5667789999999999998875
No 127
>KOG0260 consensus RNA polymerase II, large subunit [Transcription]
Probab=64.15 E-value=1.3e+02 Score=34.53 Aligned_cols=14 Identities=21% Similarity=0.389 Sum_probs=8.0
Q ss_pred CCccceecccccCC
Q 022509 81 SRTCAICLEDYSVG 94 (296)
Q Consensus 81 ~~~CaICLe~f~~~ 94 (296)
.+.|.-|-|.+..+
T Consensus 1391 kd~~rgvsEnImlg 1404 (1605)
T KOG0260|consen 1391 KDPCRGVSENIMLG 1404 (1605)
T ss_pred cCCCccceeeeeec
Confidence 35566666665544
No 128
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=63.09 E-value=6.3 Score=27.71 Aligned_cols=44 Identities=23% Similarity=0.512 Sum_probs=19.9
Q ss_pred CccceecccccCCCceEEeCCCCccchhhHHHHHhh----CCCCCCccccc
Q 022509 82 RTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTS----WRTFCPVCKRD 128 (296)
Q Consensus 82 ~~CaICLe~f~~~d~vr~LpCgH~FH~~CId~WL~~----~~~tCPlCR~~ 128 (296)
..|+|....++. .+|-..|.|.-+.+ ++.||+. ..-.||+|.++
T Consensus 3 L~CPls~~~i~~--P~Rg~~C~H~~CFD-l~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 3 LRCPLSFQRIRI--PVRGKNCKHLQCFD-LESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp SB-TTTSSB-SS--EEEETT--SS--EE-HHHHHHHHHHS---B-TTT---
T ss_pred eeCCCCCCEEEe--CccCCcCcccceEC-HHHHHHHhhccCCeECcCCcCc
Confidence 457777777654 46766799874322 4556653 22349999763
No 129
>smart00132 LIM Zinc-binding domain present in Lin-11, Isl-1, Mec-3. Zinc-binding domain family. Some LIM domains bind protein partners via tyrosine-containing motifs. LIM domains are found in many key regulators of developmental pathways.
Probab=62.79 E-value=8.1 Score=24.12 Aligned_cols=37 Identities=24% Similarity=0.459 Sum_probs=23.9
Q ss_pred ccceecccccCCCceEEeCCCCccchhhHHHHHhhCCCCCCcccccc
Q 022509 83 TCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDA 129 (296)
Q Consensus 83 ~CaICLe~f~~~d~vr~LpCgH~FH~~CId~WL~~~~~tCPlCR~~i 129 (296)
.|..|.+.+...+... ..=+..||.+|+ .|..|+..+
T Consensus 1 ~C~~C~~~i~~~~~~~-~~~~~~~H~~Cf---------~C~~C~~~L 37 (39)
T smart00132 1 KCAGCGKPIRGGELVL-RALGKVWHPECF---------KCSKCGKPL 37 (39)
T ss_pred CccccCCcccCCcEEE-EeCCccccccCC---------CCcccCCcC
Confidence 3788888877663322 223778998873 377776655
No 130
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=62.59 E-value=7.3 Score=36.76 Aligned_cols=51 Identities=14% Similarity=0.257 Sum_probs=37.9
Q ss_pred CCCccceecccccCCCceEEe-CCCCccchhhHHHHHhhCCCCCCccccccCCCC
Q 022509 80 TSRTCAICLEDYSVGEKLRIL-PCRHKFHAFCVDSWLTSWRTFCPVCKRDARTST 133 (296)
Q Consensus 80 ~~~~CaICLe~f~~~d~vr~L-pCgH~FH~~CId~WL~~~~~tCPlCR~~i~~~~ 133 (296)
....|+|---+|........| +|||+|-..-+.+. + ...|++|.+.+....
T Consensus 110 a~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKei-k--as~C~~C~a~y~~~d 161 (293)
T KOG3113|consen 110 ARFICPVTGLEMNGKYRFCALRCCGCVFSERALKEI-K--ASVCHVCGAAYQEDD 161 (293)
T ss_pred ceeecccccceecceEEEEEEeccceeccHHHHHHh-h--hccccccCCcccccC
Confidence 457899988888776554444 59999999988874 2 345999988766544
No 131
>PLN02189 cellulose synthase
Probab=62.52 E-value=9 Score=42.52 Aligned_cols=56 Identities=20% Similarity=0.415 Sum_probs=39.9
Q ss_pred CCCccceecccccCCC--ceEEe--CCCCccchhhHHHHHhhCCCCCCccccccCCCCCC
Q 022509 80 TSRTCAICLEDYSVGE--KLRIL--PCRHKFHAFCVDSWLTSWRTFCPVCKRDARTSTGE 135 (296)
Q Consensus 80 ~~~~CaICLe~f~~~d--~vr~L--pCgH~FH~~CId~WL~~~~~tCPlCR~~i~~~~~~ 135 (296)
....|.||-|++...+ ++.+- .|+--.|+.|.+-=.+.++..||-|+..+...++.
T Consensus 33 ~~~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~eg~q~CpqCkt~Y~r~kgs 92 (1040)
T PLN02189 33 DGQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQNCPQCKTRYKRLKGS 92 (1040)
T ss_pred cCccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchhhccCC
Confidence 4579999999976432 23222 27888999999765556677899999888755544
No 132
>PF15102 TMEM154: TMEM154 protein family
Probab=61.30 E-value=3.8 Score=35.45 Aligned_cols=8 Identities=38% Similarity=0.970 Sum_probs=5.8
Q ss_pred hHHHHHhh
Q 022509 110 CVDSWLTS 117 (296)
Q Consensus 110 CId~WL~~ 117 (296)
=+|+|+..
T Consensus 129 eldkwm~s 136 (146)
T PF15102_consen 129 ELDKWMNS 136 (146)
T ss_pred HHHhHHHh
Confidence 37888875
No 133
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=61.23 E-value=5 Score=38.46 Aligned_cols=37 Identities=22% Similarity=0.402 Sum_probs=29.2
Q ss_pred CCCccceecccccCCCceEEeC--CCCccchhhHHHHHhh
Q 022509 80 TSRTCAICLEDYSVGEKLRILP--CRHKFHAFCVDSWLTS 117 (296)
Q Consensus 80 ~~~~CaICLe~f~~~d~vr~Lp--CgH~FH~~CId~WL~~ 117 (296)
....|.+|.|.+++..-|. -| =.|.||..|-++-++.
T Consensus 267 apLcCTLC~ERLEDTHFVQ-CPSVp~HKFCFPCSResIK~ 305 (352)
T KOG3579|consen 267 APLCCTLCHERLEDTHFVQ-CPSVPSHKFCFPCSRESIKQ 305 (352)
T ss_pred CceeehhhhhhhccCceee-cCCCcccceecccCHHHHHh
Confidence 3479999999998775444 22 2899999999999986
No 134
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=61.22 E-value=3.1 Score=28.53 Aligned_cols=45 Identities=22% Similarity=0.569 Sum_probs=29.1
Q ss_pred ccceecccccCCCceEEeCCCCccchhhHHHHHhh-----CCCCCCcccc
Q 022509 83 TCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTS-----WRTFCPVCKR 127 (296)
Q Consensus 83 ~CaICLe~f~~~d~vr~LpCgH~FH~~CId~WL~~-----~~~tCPlCR~ 127 (296)
.|.||......++.+.--.|+-.||..|++.=... ..-.||.|+.
T Consensus 1 ~C~vC~~~~~~~~~i~C~~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~~ 50 (51)
T PF00628_consen 1 YCPVCGQSDDDGDMIQCDSCNRWYHQECVGPPEKAEEIPSGDWYCPNCRP 50 (51)
T ss_dssp EBTTTTSSCTTSSEEEBSTTSCEEETTTSTSSHSHHSHHSSSBSSHHHHH
T ss_pred eCcCCCCcCCCCCeEEcCCCChhhCcccCCCChhhccCCCCcEECcCCcC
Confidence 38899885444444444459999999998653321 1335888864
No 135
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=61.12 E-value=10 Score=36.98 Aligned_cols=67 Identities=24% Similarity=0.389 Sum_probs=44.1
Q ss_pred HHHHHhCCcceeecccccC-CCCCccceecccccCCCceEEeCCCCccchhhHHHHHhhCCCCCCcccc
Q 022509 60 RRLVKAMPSLIFTAVVEDN-CTSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKR 127 (296)
Q Consensus 60 ~~~i~~lp~~~~~~~~~~~-~~~~~CaICLe~f~~~d~vr~LpCgH~FH~~CId~WL~~~~~tCPlCR~ 127 (296)
+...--+|...|.+..... .+...|-.|.++.......+.-.|.+.||.+|=.---+. -..||-|..
T Consensus 308 RSyhhL~PL~~F~Eip~~~~~~~~~Cf~C~~~~~~~~~y~C~~Ck~~FCldCDv~iHes-Lh~CpgCeh 375 (378)
T KOG2807|consen 308 RSYHHLFPLKPFVEIPETEYNGSRFCFACQGELLSSGRYRCESCKNVFCLDCDVFIHES-LHNCPGCEH 375 (378)
T ss_pred HHHHhhcCCcchhhccccccCCCcceeeeccccCCCCcEEchhccceeeccchHHHHhh-hhcCCCcCC
Confidence 3444455655555544332 345679999888887777777779999999994333233 234999963
No 136
>KOG2071 consensus mRNA cleavage and polyadenylation factor I/II complex, subunit Pcf11 [RNA processing and modification]
Probab=57.56 E-value=5.7 Score=41.30 Aligned_cols=35 Identities=23% Similarity=0.530 Sum_probs=25.2
Q ss_pred CCCCccceecccccC-----------CCceEEeCCCCccchhhHHHH
Q 022509 79 CTSRTCAICLEDYSV-----------GEKLRILPCRHKFHAFCVDSW 114 (296)
Q Consensus 79 ~~~~~CaICLe~f~~-----------~d~vr~LpCgH~FH~~CId~W 114 (296)
.....|+||.|.|+. .+.|.+. =|-+||..|+.+=
T Consensus 511 e~~~~C~IC~EkFe~v~d~e~~~Wm~kdaV~le-~G~ifH~~Cl~e~ 556 (579)
T KOG2071|consen 511 ERQASCPICQEKFEVVFDQEEDLWMYKDAVYLE-FGRIFHSKCLSEK 556 (579)
T ss_pred ccccCCcccccccceeecchhhheeecceeeec-cCceeeccccchH
Confidence 456899999999976 1223322 5889999998764
No 137
>PF15050 SCIMP: SCIMP protein
Probab=56.96 E-value=21 Score=30.11 Aligned_cols=29 Identities=17% Similarity=0.224 Sum_probs=18.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 022509 16 IMAISFISLLAMSAVLATCFFVRRHRIRR 44 (296)
Q Consensus 16 iliI~fi~Ll~i~~vl~i~~~i~r~r~rr 44 (296)
|.+|+.+.++++.+++.+++++..++..|
T Consensus 8 FWiiLAVaII~vS~~lglIlyCvcR~~lR 36 (133)
T PF15050_consen 8 FWIILAVAIILVSVVLGLILYCVCRWQLR 36 (133)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677777777777777766654444433
No 138
>PLN02436 cellulose synthase A
Probab=56.36 E-value=13 Score=41.41 Aligned_cols=56 Identities=20% Similarity=0.415 Sum_probs=39.2
Q ss_pred CCCccceecccccCCC--ceEEe--CCCCccchhhHHHHHhhCCCCCCccccccCCCCCC
Q 022509 80 TSRTCAICLEDYSVGE--KLRIL--PCRHKFHAFCVDSWLTSWRTFCPVCKRDARTSTGE 135 (296)
Q Consensus 80 ~~~~CaICLe~f~~~d--~vr~L--pCgH~FH~~CId~WL~~~~~tCPlCR~~i~~~~~~ 135 (296)
....|-||-|++.... ++-+- .|+--.|+.|.+-=.+.++..||-|+..+...++.
T Consensus 35 ~~~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyeyer~eg~~~Cpqckt~Y~r~kgs 94 (1094)
T PLN02436 35 SGQTCQICGDEIELTVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKRIKGS 94 (1094)
T ss_pred CCccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchhhccCC
Confidence 4569999999974432 23322 27777999999765566677799999887755433
No 139
>PF00558 Vpu: Vpu protein; InterPro: IPR008187 The Human immunodeficiency virus 1 (HIV-1) Vpu protein acts in the degradation of CD4 in the endoplasmic reticulum and in the enhancement of virion release from the plasma membrane of infected cells [].; GO: 0019076 release of virus from host; PDB: 2JPX_A 1PI8_A 2GOH_A 2GOF_A 1PI7_A 1PJE_A 1VPU_A 2K7Y_A.
Probab=54.52 E-value=15 Score=28.69 Aligned_cols=25 Identities=24% Similarity=0.465 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhh
Q 022509 19 ISFISLLAMSAVLATCFFVRRHRIR 43 (296)
Q Consensus 19 I~fi~Ll~i~~vl~i~~~i~r~r~r 43 (296)
+++++++++.+++..+.++..++.+
T Consensus 10 ialiv~~iiaIvvW~iv~ieYrk~~ 34 (81)
T PF00558_consen 10 IALIVALIIAIVVWTIVYIEYRKIK 34 (81)
T ss_dssp HHHHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344344444334344333333
No 140
>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins. Their function is unknown.
Probab=54.01 E-value=19 Score=31.70 Aligned_cols=28 Identities=29% Similarity=0.503 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhc
Q 022509 18 AISFISLLAMSAVLATCFFVRRHRIRRE 45 (296)
Q Consensus 18 iI~fi~Ll~i~~vl~i~~~i~r~r~rr~ 45 (296)
.-+|++++++.+++++||+++..|.|++
T Consensus 95 ~R~~~Vl~g~s~l~i~yfvir~~R~r~~ 122 (163)
T PF06679_consen 95 KRALYVLVGLSALAILYFVIRTFRLRRR 122 (163)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 3444555555555556666666666553
No 141
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=53.96 E-value=15 Score=30.38 Aligned_cols=45 Identities=24% Similarity=0.417 Sum_probs=31.7
Q ss_pred CCccceecccccCCC-----------ceEEeCCCCccchhhHHHHHhhCCCCCCccc
Q 022509 81 SRTCAICLEDYSVGE-----------KLRILPCRHKFHAFCVDSWLTSWRTFCPVCK 126 (296)
Q Consensus 81 ~~~CaICLe~f~~~d-----------~vr~LpCgH~FH~~CId~WL~~~~~tCPlCR 126 (296)
...|--|+..|.... ..+--.|++.|+.+|=.-|-+.-+. ||-|.
T Consensus 55 ~~~C~~C~~~f~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~-CPGC~ 110 (112)
T TIGR00622 55 SRFCFGCQGPFPKPPVSPFDELKDSHRYVCAVCKNVFCVDCDVFVHESLHC-CPGCI 110 (112)
T ss_pred CCcccCcCCCCCCcccccccccccccceeCCCCCCccccccchhhhhhccC-CcCCC
Confidence 467999999986531 1223349999999996666665344 99995
No 142
>PF08114 PMP1_2: ATPase proteolipid family; InterPro: IPR012589 This family consists of small proteolipids associated with the plasma membrane H+ ATPase. Two proteolipids (PMP1 and PMP2) are associated with the ATPase and both genes are similarly expressed in the wild-type strain of yeast. No modification of the level of transcription of one PMP gene is detected in a strain deleted of the other. Though both proteolipids show similarity with other small proteolipids associated with other cation -transporting ATPases, their functions remain unclear [].
Probab=53.27 E-value=13 Score=25.47 Aligned_cols=7 Identities=29% Similarity=0.714 Sum_probs=2.6
Q ss_pred HHHHhhh
Q 022509 35 FFVRRHR 41 (296)
Q Consensus 35 ~~i~r~r 41 (296)
+.++++.
T Consensus 28 ~iYRKw~ 34 (43)
T PF08114_consen 28 FIYRKWQ 34 (43)
T ss_pred HHHHHHH
Confidence 3333333
No 143
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=52.64 E-value=6.6 Score=25.78 Aligned_cols=25 Identities=32% Similarity=0.818 Sum_probs=16.3
Q ss_pred ccceecccccCCCc--------eEEeCCCCccc
Q 022509 83 TCAICLEDYSVGEK--------LRILPCRHKFH 107 (296)
Q Consensus 83 ~CaICLe~f~~~d~--------vr~LpCgH~FH 107 (296)
+|+=|...|+.+|+ ++.-.|+|+|+
T Consensus 4 ~Cp~C~~~y~i~d~~ip~~g~~v~C~~C~~~f~ 36 (36)
T PF13717_consen 4 TCPNCQAKYEIDDEKIPPKGRKVRCSKCGHVFF 36 (36)
T ss_pred ECCCCCCEEeCCHHHCCCCCcEEECCCCCCEeC
Confidence 57778888777553 34444788774
No 144
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=52.10 E-value=16 Score=35.72 Aligned_cols=54 Identities=22% Similarity=0.480 Sum_probs=36.2
Q ss_pred CCCccceecccccC---------CC-------ceEEeCCCCccchhhHHHHHhh--------CCCCCCccccccCCCC
Q 022509 80 TSRTCAICLEDYSV---------GE-------KLRILPCRHKFHAFCVDSWLTS--------WRTFCPVCKRDARTST 133 (296)
Q Consensus 80 ~~~~CaICLe~f~~---------~d-------~vr~LpCgH~FH~~CId~WL~~--------~~~tCPlCR~~i~~~~ 133 (296)
.+.+|++|+..=.. +- .-.--||||+--++=+.-|-+. -+..||.|-..+....
T Consensus 340 ~~r~CPmC~~~gp~V~L~lG~E~~f~vD~G~pthaF~PCGHv~sekt~~YWs~iplPhGT~~f~a~CPFC~~~L~ge~ 417 (429)
T KOG3842|consen 340 RERECPMCRVVGPYVPLWLGCEAGFYVDAGPPTHAFNPCGHVCSEKTVKYWSQIPLPHGTHAFHAACPFCATQLAGEQ 417 (429)
T ss_pred ccCcCCeeeeecceeeeeccccceeEecCCCcccccCCcccccchhhhhHhhcCcCCCccccccccCcchhhhhccCC
Confidence 46899999975211 10 1124579999999999999874 1234999987765543
No 145
>PF14654 Epiglycanin_C: Mucin, catalytic, TM and cytoplasmic tail region
Probab=50.19 E-value=31 Score=28.08 Aligned_cols=37 Identities=27% Similarity=0.494 Sum_probs=24.8
Q ss_pred EcCCCCccchhhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 022509 5 IIPSFENSAWSIMAISFISLLAMSAVLATCFFVRRHR 41 (296)
Q Consensus 5 lip~~~~s~w~iliI~fi~Ll~i~~vl~i~~~i~r~r 41 (296)
+.|+-...-|.|++|.++.+++..-+++-++|+.|..
T Consensus 9 ~KPsGsL~PWeIfLItLasVvvavGl~aGLfFcvR~~ 45 (106)
T PF14654_consen 9 VKPSGSLKPWEIFLITLASVVVAVGLFAGLFFCVRNS 45 (106)
T ss_pred cccCCCccchHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 4556666679999888887766666666566555543
No 146
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=48.68 E-value=8.3 Score=35.46 Aligned_cols=42 Identities=29% Similarity=0.777 Sum_probs=33.6
Q ss_pred CCccceecccccCCCceEEeCCCCccchhhHHHHHhhCCCCCCcc
Q 022509 81 SRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVC 125 (296)
Q Consensus 81 ~~~CaICLe~f~~~d~vr~LpCgH~FH~~CId~WL~~~~~tCPlC 125 (296)
-..|.+|..-.-.+ ++.=.||-.+|..|+...++. ...||.|
T Consensus 181 lk~Cn~Ch~LvIqg--~rCg~c~i~~h~~c~qty~q~-~~~cphc 222 (235)
T KOG4718|consen 181 LKNCNLCHCLVIQG--IRCGSCNIQYHRGCIQTYLQR-RDICPHC 222 (235)
T ss_pred HHHHhHhHHHhhee--eccCcccchhhhHHHHHHhcc-cCcCCch
Confidence 47899998876544 344458888999999999998 6779999
No 147
>PF04971 Lysis_S: Lysis protein S ; InterPro: IPR007054 The lysis S protein is a cytotoxic protein forming holes in membranes causing cell lysis. The action of Lysis S is independent of the proportion of acidic phospholipids in the membrane [].
Probab=47.76 E-value=23 Score=26.88 Aligned_cols=34 Identities=15% Similarity=0.363 Sum_probs=20.9
Q ss_pred cCCCCccchhhhHHHHHHHHHHHHHHHHHHHHHh
Q 022509 6 IPSFENSAWSIMAISFISLLAMSAVLATCFFVRR 39 (296)
Q Consensus 6 ip~~~~s~w~iliI~fi~Ll~i~~vl~i~~~i~r 39 (296)
...+.+..|..+.++..+++.++.++.=++|..+
T Consensus 25 ld~~sp~qW~aIGvi~gi~~~~lt~ltN~YFK~k 58 (68)
T PF04971_consen 25 LDQFSPSQWAAIGVIGGIFFGLLTYLTNLYFKIK 58 (68)
T ss_pred HhccCcccchhHHHHHHHHHHHHHHHhHhhhhhh
Confidence 3456667788777777666666655554444433
No 148
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=47.62 E-value=41 Score=22.68 Aligned_cols=14 Identities=0% Similarity=-0.100 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHHHH
Q 022509 24 LLAMSAVLATCFFV 37 (296)
Q Consensus 24 Ll~i~~vl~i~~~i 37 (296)
++.+++.++.+.+.
T Consensus 16 ~~iiii~~~~YaCc 29 (38)
T PF02439_consen 16 MAIIIICMFYYACC 29 (38)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 149
>KOG1729 consensus FYVE finger containing protein [General function prediction only]
Probab=47.47 E-value=3.8 Score=39.19 Aligned_cols=36 Identities=33% Similarity=0.695 Sum_probs=30.2
Q ss_pred CccceecccccCCCceEEeCCCCccchhhHHHHHhh
Q 022509 82 RTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTS 117 (296)
Q Consensus 82 ~~CaICLe~f~~~d~vr~LpCgH~FH~~CId~WL~~ 117 (296)
..|.+|+++|..+.....+.|.-+||..|+-.|+..
T Consensus 215 rvC~~CF~el~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (288)
T KOG1729|consen 215 RVCDICFEELEKGARGDREDSLPVFHGKCYPNWLTT 250 (288)
T ss_pred eecHHHHHHHhcccccchhhcccccccccccccccc
Confidence 489999999987666666667669999999999887
No 150
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=46.51 E-value=30 Score=29.07 Aligned_cols=28 Identities=21% Similarity=0.113 Sum_probs=14.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 022509 17 MAISFISLLAMSAVLATCFFVRRHRIRR 44 (296)
Q Consensus 17 liI~fi~Ll~i~~vl~i~~~i~r~r~rr 44 (296)
-.|+.|++.+|+.++++++++....+|+
T Consensus 64 ~~i~~Ii~gv~aGvIg~Illi~y~irR~ 91 (122)
T PF01102_consen 64 PAIIGIIFGVMAGVIGIILLISYCIRRL 91 (122)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cceeehhHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555655555555444444333
No 151
>PHA02650 hypothetical protein; Provisional
Probab=46.03 E-value=37 Score=26.52 Aligned_cols=9 Identities=0% Similarity=-0.367 Sum_probs=4.0
Q ss_pred cchhhhHHH
Q 022509 12 SAWSIMAIS 20 (296)
Q Consensus 12 s~w~iliI~ 20 (296)
..|.+++++
T Consensus 47 ~~~~~~ii~ 55 (81)
T PHA02650 47 FNGQNFIFL 55 (81)
T ss_pred chHHHHHHH
Confidence 344444444
No 152
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=45.96 E-value=10 Score=27.08 Aligned_cols=42 Identities=24% Similarity=0.577 Sum_probs=19.5
Q ss_pred cceecccccCCC------ceEEe-CCCCccchhhHHHHHhhCCCCCCccc
Q 022509 84 CAICLEDYSVGE------KLRIL-PCRHKFHAFCVDSWLTSWRTFCPVCK 126 (296)
Q Consensus 84 CaICLe~f~~~d------~vr~L-pCgH~FH~~CId~WL~~~~~tCPlCR 126 (296)
|--|+.+|.... ....- .|++.|+.+| |..+-..--+||-|.
T Consensus 2 CfgC~~~~~~~~~~~~~~~~y~C~~C~~~FC~dC-D~fiHE~LH~CPGC~ 50 (51)
T PF07975_consen 2 CFGCQKPFPDGPEKKADSSRYRCPKCKNHFCIDC-DVFIHETLHNCPGCE 50 (51)
T ss_dssp ETTTTEE-TTS-------EEE--TTTT--B-HHH-HHTTTTTS-SSSTT-
T ss_pred CccCCCCCCCcccccccCCeEECCCCCCccccCc-ChhhhccccCCcCCC
Confidence 455666666542 12222 3999999999 444432223499884
No 153
>PF06716 DUF1201: Protein of unknown function (DUF1201); InterPro: IPR009591 This entry consists of several Beet yellows virus (BYV) putative membrane-binding proteins of around 54 residues in length. The function of this currently unknown.
Probab=45.64 E-value=58 Score=23.05 Aligned_cols=6 Identities=33% Similarity=0.894 Sum_probs=2.2
Q ss_pred HHHHhh
Q 022509 35 FFVRRH 40 (296)
Q Consensus 35 ~~i~r~ 40 (296)
+++.++
T Consensus 29 ~F~~Kq 34 (54)
T PF06716_consen 29 WFVYKQ 34 (54)
T ss_pred HHHHHH
Confidence 333333
No 154
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=44.96 E-value=9.2 Score=27.89 Aligned_cols=37 Identities=16% Similarity=0.404 Sum_probs=18.7
Q ss_pred CCCccceecccccCCCceEEe-CCCCccchhhHHHHHh
Q 022509 80 TSRTCAICLEDYSVGEKLRIL-PCRHKFHAFCVDSWLT 116 (296)
Q Consensus 80 ~~~~CaICLe~f~~~d~vr~L-pCgH~FH~~CId~WL~ 116 (296)
+...|.+|..+|..-..-..- -||++|+.+|....+.
T Consensus 8 ~~~~C~~C~~~F~~~~rrhhCr~CG~~vC~~Cs~~~~~ 45 (69)
T PF01363_consen 8 EASNCMICGKKFSLFRRRHHCRNCGRVVCSSCSSQRIP 45 (69)
T ss_dssp G-SB-TTT--B-BSSS-EEE-TTT--EEECCCS-EEEE
T ss_pred CCCcCcCcCCcCCCceeeEccCCCCCEECCchhCCEEc
Confidence 458899999999654322222 3999999999876543
No 155
>PF04277 OAD_gamma: Oxaloacetate decarboxylase, gamma chain ; InterPro: IPR005899 This family comprises distantly related, low complexity, hydrophobic small subunits of several related sodium ion-pumping decarboxylases. These include oxaloacetate decarboxylase gamma subunit and methylmalonyl-CoA decarboxylase delta subunit [].; GO: 0008948 oxaloacetate decarboxylase activity, 0015081 sodium ion transmembrane transporter activity, 0071436 sodium ion export, 0016020 membrane
Probab=44.83 E-value=50 Score=24.68 Aligned_cols=25 Identities=16% Similarity=0.135 Sum_probs=10.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHH
Q 022509 14 WSIMAISFISLLAMSAVLATCFFVR 38 (296)
Q Consensus 14 w~iliI~fi~Ll~i~~vl~i~~~i~ 38 (296)
|.++++.+.+++++++++.+++.+.
T Consensus 5 l~i~i~Gm~iVF~~L~lL~~~i~l~ 29 (79)
T PF04277_consen 5 LQIMIIGMGIVFLVLILLILVISLM 29 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444443333343333333
No 156
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=44.80 E-value=15 Score=33.79 Aligned_cols=27 Identities=7% Similarity=0.084 Sum_probs=13.2
Q ss_pred CccchhhhHHHHHHHHHHHHHHHHHHH
Q 022509 10 ENSAWSIMAISFISLLAMSAVLATCFF 36 (296)
Q Consensus 10 ~~s~w~iliI~fi~Ll~i~~vl~i~~~ 36 (296)
.+.++++++|+.+++.++++++++.++
T Consensus 34 ~d~~~I~iaiVAG~~tVILVI~i~v~v 60 (221)
T PF08374_consen 34 KDYVKIMIAIVAGIMTVILVIFIVVLV 60 (221)
T ss_pred ccceeeeeeeecchhhhHHHHHHHHHH
Confidence 344555555555555544444444433
No 157
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=44.34 E-value=11 Score=37.49 Aligned_cols=45 Identities=27% Similarity=0.561 Sum_probs=30.7
Q ss_pred CCCccceecccccCCCceEEe--CCCCccchhhHHHHHhhCCCCCCcc
Q 022509 80 TSRTCAICLEDYSVGEKLRIL--PCRHKFHAFCVDSWLTSWRTFCPVC 125 (296)
Q Consensus 80 ~~~~CaICLe~f~~~d~vr~L--pCgH~FH~~CId~WL~~~~~tCPlC 125 (296)
....|+.|.--++..+....+ .|||.|+..|...|... +..|..|
T Consensus 305 ~wr~CpkC~~~ie~~~GCnhm~CrC~~~fcy~C~~~~~~~-~~~~~~~ 351 (384)
T KOG1812|consen 305 RWRQCPKCKFMIELSEGCNHMTCRCGHQFCYMCGGDWKTH-NGECYEC 351 (384)
T ss_pred hcCcCcccceeeeecCCcceEEeeccccchhhcCcchhhC-CccccCc
Confidence 357888887766554433222 28999999999999876 4446444
No 158
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=43.90 E-value=7.6 Score=38.72 Aligned_cols=47 Identities=19% Similarity=0.478 Sum_probs=0.0
Q ss_pred CCCCccceecccccC-----------CCceEEeCCCCccchhhHHHHHhh-----CCCCCCccccc
Q 022509 79 CTSRTCAICLEDYSV-----------GEKLRILPCRHKFHAFCVDSWLTS-----WRTFCPVCKRD 128 (296)
Q Consensus 79 ~~~~~CaICLe~f~~-----------~d~vr~LpCgH~FH~~CId~WL~~-----~~~tCPlCR~~ 128 (296)
....+|+|=|..+.- .+...-|.|||++.. ..|-.. ...+||+||..
T Consensus 275 a~rpQCPVglnTL~fp~~~~~~~~~~~qP~VYl~CGHVhG~---h~Wg~~~~~~~~~r~CPlCr~~ 337 (416)
T PF04710_consen 275 AGRPQCPVGLNTLVFPSKSRKDVPDERQPWVYLNCGHVHGY---HNWGQDSDRDPRSRTCPLCRQV 337 (416)
T ss_dssp ------------------------------------------------------------------
T ss_pred hcCCCCCcCCCccccccccccccccccCceeeccccceeee---cccccccccccccccCCCcccc
Confidence 345678877655422 233456779999653 356532 13459999874
No 159
>PF14584 DUF4446: Protein of unknown function (DUF4446)
Probab=43.76 E-value=39 Score=29.27 Aligned_cols=15 Identities=20% Similarity=0.133 Sum_probs=9.3
Q ss_pred cCCCCCccceecccc
Q 022509 77 DNCTSRTCAICLEDY 91 (296)
Q Consensus 77 ~~~~~~~CaICLe~f 91 (296)
+..++..-++||-+-
T Consensus 93 dmGg~LSFslAlLD~ 107 (151)
T PF14584_consen 93 DMGGDLSFSLALLDD 107 (151)
T ss_pred cccccceeeeEEEeC
Confidence 334567777777663
No 160
>PF15179 Myc_target_1: Myc target protein 1
Probab=43.50 E-value=39 Score=30.44 Aligned_cols=31 Identities=19% Similarity=0.423 Sum_probs=16.5
Q ss_pred CCCCccchhhhHHHHHHHHHHHHHHHHHHHH
Q 022509 7 PSFENSAWSIMAISFISLLAMSAVLATCFFV 37 (296)
Q Consensus 7 p~~~~s~w~iliI~fi~Ll~i~~vl~i~~~i 37 (296)
+..++..|.-++++|.+-+++.+++..++++
T Consensus 11 ~~~~~f~~~~lIlaF~vSm~iGLviG~li~~ 41 (197)
T PF15179_consen 11 EWLENFDWEDLILAFCVSMAIGLVIGALIWA 41 (197)
T ss_pred cchhhcchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555666676666544444444444333
No 161
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=43.05 E-value=4 Score=38.21 Aligned_cols=48 Identities=27% Similarity=0.541 Sum_probs=38.7
Q ss_pred CCccceecccccCCC---ceEEeC--------CCCccchhhHHHHHhhCCCCCCccccc
Q 022509 81 SRTCAICLEDYSVGE---KLRILP--------CRHKFHAFCVDSWLTSWRTFCPVCKRD 128 (296)
Q Consensus 81 ~~~CaICLe~f~~~d---~vr~Lp--------CgH~FH~~CId~WL~~~~~tCPlCR~~ 128 (296)
...|.||...|..++ .-+++. |||..+..|++.-+.+....||.||..
T Consensus 207 ~~~c~ic~~~~~~n~~~~~p~vl~~~~~~~~~c~htlc~~c~~~~l~~~~~~cp~~~~~ 265 (296)
T KOG4185|consen 207 EKLCEICERIYSENDEKLAPLVLSLSRLKEKIEGHTLCKECIDTILLQAGIKCPFCTWS 265 (296)
T ss_pred HHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHhcchHHHHHHhhhcCCcccce
Confidence 477999999998432 335666 999999999999988755779999875
No 162
>PF12877 DUF3827: Domain of unknown function (DUF3827); InterPro: IPR024606 The function of the proteins in this entry is not currently known, but one of the human proteins (Q9HCM3 from SWISSPROT) has been implicated in pilocytic astrocytomas [, , ]. In the majority of cases of pilocytic astrocytomas a tandem duplication produces an in-frame fusion of the gene encoding this protein and the BRAF oncogene. The resulting fusion protein has constitutive BRAF kinase activity and is capable of transforming cells.
Probab=42.03 E-value=24 Score=37.42 Aligned_cols=30 Identities=13% Similarity=0.245 Sum_probs=19.3
Q ss_pred CCccchhhhHHHHHHHHHHHHHHHHHHHHH
Q 022509 9 FENSAWSIMAISFISLLAMSAVLATCFFVR 38 (296)
Q Consensus 9 ~~~s~w~iliI~fi~Ll~i~~vl~i~~~i~ 38 (296)
..+.+|+|++++.-+++++++++++++.+.
T Consensus 265 ~~~NlWII~gVlvPv~vV~~Iiiil~~~LC 294 (684)
T PF12877_consen 265 PPNNLWIIAGVLVPVLVVLLIIIILYWKLC 294 (684)
T ss_pred CCCCeEEEehHhHHHHHHHHHHHHHHHHHh
Confidence 457789988887666665555555555444
No 163
>PRK00523 hypothetical protein; Provisional
Probab=40.91 E-value=50 Score=25.30 Aligned_cols=12 Identities=17% Similarity=-0.111 Sum_probs=4.7
Q ss_pred hhhhHHHHHHHH
Q 022509 14 WSIMAISFISLL 25 (296)
Q Consensus 14 w~iliI~fi~Ll 25 (296)
|.++.|+++++.
T Consensus 3 ~~~l~I~l~i~~ 14 (72)
T PRK00523 3 AIGLALGLGIPL 14 (72)
T ss_pred hHHHHHHHHHHH
Confidence 333444433333
No 164
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=40.46 E-value=2.7 Score=31.98 Aligned_cols=41 Identities=22% Similarity=0.566 Sum_probs=21.4
Q ss_pred CccceecccccCCCceEEeCCCCccchhhHHHHHhhCCCCCCccccccCC
Q 022509 82 RTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDART 131 (296)
Q Consensus 82 ~~CaICLe~f~~~d~vr~LpCgH~FH~~CId~WL~~~~~tCPlCR~~i~~ 131 (296)
..|+.|-.+++... +|.++..|-....+ ...||-|.+++..
T Consensus 2 ~~CP~C~~~L~~~~-------~~~~C~~C~~~~~~--~a~CPdC~~~Le~ 42 (70)
T PF07191_consen 2 NTCPKCQQELEWQG-------GHYHCEACQKDYKK--EAFCPDCGQPLEV 42 (70)
T ss_dssp -B-SSS-SBEEEET-------TEEEETTT--EEEE--EEE-TTT-SB-EE
T ss_pred CcCCCCCCccEEeC-------CEEECcccccccee--cccCCCcccHHHH
Confidence 46888888865443 66677777665433 3559998877654
No 165
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=40.44 E-value=32 Score=38.55 Aligned_cols=54 Identities=17% Similarity=0.312 Sum_probs=37.7
Q ss_pred CCCccceecccccCCC--ce--EEeCCCCccchhhHHHHHhhCCCCCCccccccCCCC
Q 022509 80 TSRTCAICLEDYSVGE--KL--RILPCRHKFHAFCVDSWLTSWRTFCPVCKRDARTST 133 (296)
Q Consensus 80 ~~~~CaICLe~f~~~d--~v--r~LpCgH~FH~~CId~WL~~~~~tCPlCR~~i~~~~ 133 (296)
....|-||-|++...+ ++ ..-.|+---|+.|.+==.+.++..||-|+..+..-+
T Consensus 16 ~~qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYEYEr~eG~q~CPqCktrYkr~k 73 (1079)
T PLN02638 16 GGQVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTKYKRHK 73 (1079)
T ss_pred CCceeeecccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchhhhc
Confidence 4569999999976543 22 222377779999986544556677999988776444
No 166
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=40.17 E-value=70 Score=24.45 Aligned_cols=12 Identities=25% Similarity=0.780 Sum_probs=5.3
Q ss_pred HHHHHHhhhhhh
Q 022509 33 TCFFVRRHRIRR 44 (296)
Q Consensus 33 i~~~i~r~r~rr 44 (296)
..+|+.|+...+
T Consensus 20 ~G~fiark~~~k 31 (71)
T COG3763 20 GGFFIARKQMKK 31 (71)
T ss_pred HHHHHHHHHHHH
Confidence 344444444433
No 167
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=39.99 E-value=12 Score=36.37 Aligned_cols=49 Identities=20% Similarity=0.461 Sum_probs=28.0
Q ss_pred CCCccceecccccC-----------CCceEEeCCCCc--cchhhHHHHHhhCCCCCCccccc
Q 022509 80 TSRTCAICLEDYSV-----------GEKLRILPCRHK--FHAFCVDSWLTSWRTFCPVCKRD 128 (296)
Q Consensus 80 ~~~~CaICLe~f~~-----------~d~vr~LpCgH~--FH~~CId~WL~~~~~tCPlCR~~ 128 (296)
.-.+|++=|..+.. ++...-|.|||+ +|.=-.++=-......||+||..
T Consensus 289 ~RPQCPVglnTL~~P~~~~~~~~~~~QP~vYl~CGHV~G~H~WG~~e~~g~~~r~CPmC~~~ 350 (429)
T KOG3842|consen 289 ARPQCPVGLNTLAFPSKRRKRVVDEKQPWVYLNCGHVHGYHNWGVRENTGQRERECPMCRVV 350 (429)
T ss_pred cCCCCCcccceeecccccccccccccCCeEEEeccccccccccccccccCcccCcCCeeeee
Confidence 34688887766532 334567889998 66321111111112359999864
No 168
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=39.73 E-value=37 Score=27.58 Aligned_cols=47 Identities=26% Similarity=0.461 Sum_probs=28.2
Q ss_pred CCCccceecccccCCCceEE------eCC---CCccchhhHHHHHhh--------CCCCCCcccc
Q 022509 80 TSRTCAICLEDYSVGEKLRI------LPC---RHKFHAFCVDSWLTS--------WRTFCPVCKR 127 (296)
Q Consensus 80 ~~~~CaICLe~f~~~d~vr~------LpC---gH~FH~~CId~WL~~--------~~~tCPlCR~ 127 (296)
.+..|..|...-. +.++.- ..| .=.|+..||..+... .+-.||.||.
T Consensus 6 ~g~~CHqCrqKt~-~~~~~C~~~~~~~~C~~~~~~fC~~CL~~ryge~~~ev~~~~~W~CP~Crg 69 (105)
T PF10497_consen 6 NGKTCHQCRQKTL-DFKTICTGHWKNSSCRGCRGKFCGGCLRNRYGENVEEVLEDPNWKCPKCRG 69 (105)
T ss_pred CCCCchhhcCCCC-CCceEcCCCCCCCCCccCcceehHhHHHHHHhhhHHHHhcCCceECCCCCC
Confidence 3456777766422 112221 336 666999999887753 2234999986
No 169
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=39.06 E-value=67 Score=25.65 Aligned_cols=31 Identities=16% Similarity=0.329 Sum_probs=13.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhhhhcc
Q 022509 16 IMAISFISLLAMSAVLATCFFVRRHRIRREA 46 (296)
Q Consensus 16 iliI~fi~Ll~i~~vl~i~~~i~r~r~rr~~ 46 (296)
-+.+.|.++.++++++.+++++...+.++.+
T Consensus 32 ~Lgm~~lvI~~iFil~VilwfvCC~kRkrsR 62 (94)
T PF05393_consen 32 NLGMWFLVICGIFILLVILWFVCCKKRKRSR 62 (94)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 3334444444444444444554444444433
No 170
>PF05715 zf-piccolo: Piccolo Zn-finger; InterPro: IPR008899 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This (predicted) zinc finger is found in the bassoon and piccolo proteins, both of which are components of the presynaptic cytoskeletal matrix (PCM) assembled at the active zone of neurotransmitter release, where Piccolo plays a role in the trafficking of synaptic vesicles (SVs) [, , ]. The Piccolo zinc fingers were found to interact with the dual prenylated rab3A and VAMP2/Synaptobrevin II receptor PRA1. There are eight conserved cysteines in Piccolo-type zinc fingers, suggesting that they coordinates two zinc ligands. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding, 0045202 synapse
Probab=38.90 E-value=22 Score=26.33 Aligned_cols=19 Identities=32% Similarity=1.041 Sum_probs=13.1
Q ss_pred CCCCCccccccCCCCCCCC
Q 022509 119 RTFCPVCKRDARTSTGEPP 137 (296)
Q Consensus 119 ~~tCPlCR~~i~~~~~~~~ 137 (296)
+..||+|+..+.....++|
T Consensus 2 k~~CPlCkt~~n~gsk~~p 20 (61)
T PF05715_consen 2 KSLCPLCKTTLNVGSKDPP 20 (61)
T ss_pred CccCCcccchhhcCCCCCC
Confidence 4569999988866555544
No 171
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=38.87 E-value=19 Score=34.22 Aligned_cols=10 Identities=30% Similarity=0.398 Sum_probs=3.9
Q ss_pred hhHHHHHHHH
Q 022509 16 IMAISFISLL 25 (296)
Q Consensus 16 iliI~fi~Ll 25 (296)
+++|.+.+.+
T Consensus 229 VVlIslAiAL 238 (281)
T PF12768_consen 229 VVLISLAIAL 238 (281)
T ss_pred EEEEehHHHH
Confidence 3334444433
No 172
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=37.95 E-value=38 Score=37.86 Aligned_cols=55 Identities=20% Similarity=0.451 Sum_probs=39.3
Q ss_pred CCCccceecccccCCC--ce--EEeCCCCccchhhHHHHHhhCCCCCCccccccCCCCC
Q 022509 80 TSRTCAICLEDYSVGE--KL--RILPCRHKFHAFCVDSWLTSWRTFCPVCKRDARTSTG 134 (296)
Q Consensus 80 ~~~~CaICLe~f~~~d--~v--r~LpCgH~FH~~CId~WL~~~~~tCPlCR~~i~~~~~ 134 (296)
....|-||-|+..... ++ ..-.|+--.|+.|.+-=.+.++..||-|+..+..-++
T Consensus 14 ~~~~c~iCGd~vg~~~~Ge~FVAC~eC~fpvCr~cyeye~~~g~~~cp~c~t~y~~~~~ 72 (1044)
T PLN02915 14 DAKTCRVCGDEVGVKEDGQPFVACHVCGFPVCKPCYEYERSEGNQCCPQCNTRYKRHKG 72 (1044)
T ss_pred CcchhhccccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchhhhcC
Confidence 5688999999976543 22 2223777799999965555667779999988775443
No 173
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=37.58 E-value=9.4 Score=26.91 Aligned_cols=11 Identities=36% Similarity=0.996 Sum_probs=5.5
Q ss_pred CCCccccccCC
Q 022509 121 FCPVCKRDART 131 (296)
Q Consensus 121 tCPlCR~~i~~ 131 (296)
.||+|.+++..
T Consensus 22 ~CPlC~r~l~~ 32 (54)
T PF04423_consen 22 CCPLCGRPLDE 32 (54)
T ss_dssp E-TTT--EE-H
T ss_pred cCCCCCCCCCH
Confidence 69999887754
No 174
>PF00412 LIM: LIM domain; InterPro: IPR001781 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents LIM-type zinc finger (Znf) domains. LIM domains coordinate one or more zinc atoms, and are named after the three proteins (LIN-11, Isl1 and MEC-3) in which they were first found. They consist of two zinc-binding motifs that resemble GATA-like Znf's, however the residues holding the zinc atom(s) are variable, involving Cys, His, Asp or Glu residues. LIM domains are involved in proteins with differing functions, including gene expression, and cytoskeleton organisation and development [, ]. Protein containing LIM Znf domains include: Caenorhabditis elegans mec-3; a protein required for the differentiation of the set of six touch receptor neurons in this nematode. C. elegans. lin-11; a protein required for the asymmetric division of vulval blast cells. Vertebrate insulin gene enhancer binding protein isl-1. Isl-1 binds to one of the two cis-acting protein-binding domains of the insulin gene. Vertebrate homeobox proteins lim-1, lim-2 (lim-5) and lim3. Vertebrate lmx-1, which acts as a transcriptional activator by binding to the FLAT element; a beta-cell-specific transcriptional enhancer found in the insulin gene. Mammalian LH-2, a transcriptional regulatory protein involved in the control of cell differentiation in developing lymphoid and neural cell types. Drosophila melanogaster (Fruit fly) protein apterous, required for the normal development of the wing and halter imaginal discs. Vertebrate protein kinases LIMK-1 and LIMK-2. Mammalian rhombotins. Rhombotin 1 (RBTN1 or TTG-1) and rhombotin-2 (RBTN2 or TTG-2) are proteins of about 160 amino acids whose genes are disrupted by chromosomal translocations in T-cell leukemia. Mammalian and avian cysteine-rich protein (CRP), a 192 amino-acid protein of unknown function. Seems to interact with zyxin. Mammalian cysteine-rich intestinal protein (CRIP), a small protein which seems to have a role in zinc absorption and may function as an intracellular zinc transport protein. Vertebrate paxillin, a cytoskeletal focal adhesion protein. Mus musculus (Mouse) testin which should not be confused with rat testin which is a thiol protease homologue (see IPR000169 from INTERPRO). Helianthus annuus (Common sunflower) pollen specific protein SF3. Chicken zyxin. Zyxin is a low-abundance adhesion plaque protein which has been shown to interact with CRP. Yeast protein LRG1 which is involved in sporulation []. Saccharomyces cerevisiae (Baker's yeast) rho-type GTPase activating protein RGA1/DBM1. C. elegans homeobox protein ceh-14. C. elegans homeobox protein unc-97. S. cerevisiae hypothetical protein YKR090w. C. elegans hypothetical proteins C28H8.6. These proteins generally contain two tandem copies of the LIM domain in their N-terminal section. Zyxin and paxillin are exceptions in that they contain respectively three and four LIM domains at their C-terminal extremity. In apterous, isl-1, LH-2, lin-11, lim-1 to lim-3, lmx-1 and ceh-14 and mec-3 there is a homeobox domain some 50 to 95 amino acids after the LIM domains. LIM domains contain seven conserved cysteine residues and a histidine. The arrangement followed by these conserved residues is: C-x(2)-C-x(16,23)-H-x(2)-[CH]-x(2)-C-x(2)-C-x(16,21)-C-x(2,3)-[CHD] LIM domains bind two zinc ions []. LIM does not bind DNA, rather it seems to act as an interface for protein-protein interaction. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CO8_A 2EGQ_A 2CUR_A 3IXE_B 1CTL_A 1B8T_A 1X62_A 2DFY_C 1IML_A 2CUQ_A ....
Probab=37.15 E-value=24 Score=24.33 Aligned_cols=39 Identities=23% Similarity=0.404 Sum_probs=23.3
Q ss_pred cceecccccCCCceEEeCCCCccchhhHHHHHhhCCCCCCccccccCCC
Q 022509 84 CAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDARTS 132 (296)
Q Consensus 84 CaICLe~f~~~d~vr~LpCgH~FH~~CId~WL~~~~~tCPlCR~~i~~~ 132 (296)
|.-|-+.+..++.+ +..-+..||.+| ..|=.|++.+...
T Consensus 1 C~~C~~~I~~~~~~-~~~~~~~~H~~C---------f~C~~C~~~l~~~ 39 (58)
T PF00412_consen 1 CARCGKPIYGTEIV-IKAMGKFWHPEC---------FKCSKCGKPLNDG 39 (58)
T ss_dssp BTTTSSBESSSSEE-EEETTEEEETTT---------SBETTTTCBTTTS
T ss_pred CCCCCCCccCcEEE-EEeCCcEEEccc---------cccCCCCCccCCC
Confidence 56677776655433 223667788777 2377777666543
No 175
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=36.85 E-value=37 Score=33.09 Aligned_cols=48 Identities=27% Similarity=0.722 Sum_probs=34.0
Q ss_pred CccceecccccCCCceEEeC--CCCccchhhHHHHHhhCCCCCCccccccCC
Q 022509 82 RTCAICLEDYSVGEKLRILP--CRHKFHAFCVDSWLTSWRTFCPVCKRDART 131 (296)
Q Consensus 82 ~~CaICLe~f~~~d~vr~Lp--CgH~FH~~CId~WL~~~~~tCPlCR~~i~~ 131 (296)
..|+||-+.....+ .-.+| |++..|..|...-... ...||.||.+...
T Consensus 250 ~s~p~~~~~~~~~d-~~~lP~~~~~~~~l~~~~t~~~~-~~~~~~~rk~~~~ 299 (327)
T KOG2068|consen 250 PSCPICYEDLDLTD-SNFLPCPCGFRLCLFCHKTISDG-DGRCPGCRKPYER 299 (327)
T ss_pred CCCCCCCCcccccc-cccccccccccchhhhhhccccc-CCCCCccCCcccc
Confidence 78999999874443 23455 7887777787776554 7789999944433
No 176
>PF14851 FAM176: FAM176 family
Probab=36.75 E-value=51 Score=28.77 Aligned_cols=17 Identities=29% Similarity=0.641 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 022509 21 FISLLAMSAVLATCFFV 37 (296)
Q Consensus 21 fi~Ll~i~~vl~i~~~i 37 (296)
|++-+.+.++|.+|.++
T Consensus 26 Fv~gVC~GLlLtLcllV 42 (153)
T PF14851_consen 26 FVSGVCAGLLLTLCLLV 42 (153)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 177
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=36.00 E-value=19 Score=22.23 Aligned_cols=29 Identities=24% Similarity=0.479 Sum_probs=10.9
Q ss_pred ccceecccccCCCceEEeCCCCccchhhH
Q 022509 83 TCAICLEDYSVGEKLRILPCRHKFHAFCV 111 (296)
Q Consensus 83 ~CaICLe~f~~~d~vr~LpCgH~FH~~CI 111 (296)
.|.+|.++...+....-..|.-.+|..|+
T Consensus 2 ~C~~C~~~~~~~~~Y~C~~Cdf~lH~~Ca 30 (30)
T PF07649_consen 2 RCDACGKPIDGGWFYRCSECDFDLHEECA 30 (30)
T ss_dssp --TTTS----S--EEE-TTT-----HHHH
T ss_pred cCCcCCCcCCCCceEECccCCCccChhcC
Confidence 47788888765344455669999999985
No 178
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=35.89 E-value=16 Score=22.37 Aligned_cols=22 Identities=27% Similarity=0.661 Sum_probs=11.2
Q ss_pred ccceecccccCCCceEEeC-CCCcc
Q 022509 83 TCAICLEDYSVGEKLRILP-CRHKF 106 (296)
Q Consensus 83 ~CaICLe~f~~~d~vr~Lp-CgH~F 106 (296)
.|+-|..++... .+.-| |||.|
T Consensus 2 ~CP~C~~~V~~~--~~~Cp~CG~~F 24 (26)
T PF10571_consen 2 TCPECGAEVPES--AKFCPHCGYDF 24 (26)
T ss_pred cCCCCcCCchhh--cCcCCCCCCCC
Confidence 466666655333 22334 66666
No 179
>KOG3726 consensus Uncharacterized conserved protein [Function unknown]
Probab=35.82 E-value=34 Score=36.46 Aligned_cols=40 Identities=23% Similarity=0.492 Sum_probs=28.4
Q ss_pred Cccceeccccc-CCCceEEeCCCCccchhhHHHHHhhCCCCCCcc
Q 022509 82 RTCAICLEDYS-VGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVC 125 (296)
Q Consensus 82 ~~CaICLe~f~-~~d~vr~LpCgH~FH~~CId~WL~~~~~tCPlC 125 (296)
..|-+|...=. +.+..+.+-|+-.||..|-+.. ...||+|
T Consensus 655 r~C~vcq~pedse~~v~rt~~C~~~~C~~c~~~~----~~~~~vC 695 (717)
T KOG3726|consen 655 RTCKVCQLPEDSETDVCRTTFCYTPYCVACSLDY----ASISEVC 695 (717)
T ss_pred HHHHHhcCCcCccccccCccccCCcchHhhhhhh----hccCccc
Confidence 67888877644 3345566779999988885553 3449999
No 180
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=35.58 E-value=17 Score=23.78 Aligned_cols=25 Identities=32% Similarity=0.744 Sum_probs=16.1
Q ss_pred ccceecccccCCCc--------eEEeCCCCccc
Q 022509 83 TCAICLEDYSVGEK--------LRILPCRHKFH 107 (296)
Q Consensus 83 ~CaICLe~f~~~d~--------vr~LpCgH~FH 107 (296)
+|+-|-..|+..+. ++.-.|+|+|.
T Consensus 4 ~CP~C~~~f~v~~~~l~~~~~~vrC~~C~~~f~ 36 (37)
T PF13719_consen 4 TCPNCQTRFRVPDDKLPAGGRKVRCPKCGHVFR 36 (37)
T ss_pred ECCCCCceEEcCHHHcccCCcEEECCCCCcEee
Confidence 57778877776542 34334788775
No 181
>PLN02400 cellulose synthase
Probab=35.25 E-value=35 Score=38.27 Aligned_cols=56 Identities=25% Similarity=0.459 Sum_probs=38.5
Q ss_pred CCCccceecccccCCC--ceE--EeCCCCccchhhHHHHHhhCCCCCCccccccCCCCCC
Q 022509 80 TSRTCAICLEDYSVGE--KLR--ILPCRHKFHAFCVDSWLTSWRTFCPVCKRDARTSTGE 135 (296)
Q Consensus 80 ~~~~CaICLe~f~~~d--~vr--~LpCgH~FH~~CId~WL~~~~~tCPlCR~~i~~~~~~ 135 (296)
....|-||-|++...+ ++- .-.|+---|+.|.+-=-+.++..||-||..+...++.
T Consensus 35 ~gqiCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCYEYERkeGnq~CPQCkTrYkR~Kgs 94 (1085)
T PLN02400 35 NGQICQICGDDVGVTETGDVFVACNECAFPVCRPCYEYERKDGTQCCPQCKTRYRRHKGS 94 (1085)
T ss_pred CCceeeecccccCcCCCCCEEEEEccCCCccccchhheecccCCccCcccCCccccccCC
Confidence 4579999999976543 233 2237777999998643444566799999887755443
No 182
>PF07010 Endomucin: Endomucin; InterPro: IPR010740 This family consists of several mammalian endomucin proteins. Endomucin is an early endothelial-specific antigen that is also expressed on putative hematopoietic progenitor cells.
Probab=35.02 E-value=56 Score=30.48 Aligned_cols=17 Identities=12% Similarity=-0.023 Sum_probs=7.0
Q ss_pred HHHHHHHHhhhhhhccc
Q 022509 31 LATCFFVRRHRIRREAP 47 (296)
Q Consensus 31 l~i~~~i~r~r~rr~~~ 47 (296)
++.++.++|-+++....
T Consensus 204 vf~LvgLyr~C~k~dPg 220 (259)
T PF07010_consen 204 VFTLVGLYRMCWKTDPG 220 (259)
T ss_pred HHHHHHHHHHhhcCCCC
Confidence 33334444444444333
No 183
>PRK14762 membrane protein; Provisional
Probab=34.52 E-value=47 Score=20.44 Aligned_cols=18 Identities=33% Similarity=0.776 Sum_probs=8.6
Q ss_pred chhhhHHHHHHHHHHHHH
Q 022509 13 AWSIMAISFISLLAMSAV 30 (296)
Q Consensus 13 ~w~iliI~fi~Ll~i~~v 30 (296)
.|.+.+|.++.++.+.-+
T Consensus 5 lw~i~iifligllvvtgv 22 (27)
T PRK14762 5 LWAVLIIFLIGLLVVTGV 22 (27)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 355555544444444433
No 184
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=34.27 E-value=23 Score=26.74 Aligned_cols=12 Identities=25% Similarity=0.836 Sum_probs=8.9
Q ss_pred cchhhHHHHHhh
Q 022509 106 FHAFCVDSWLTS 117 (296)
Q Consensus 106 FH~~CId~WL~~ 117 (296)
||+.|+..|...
T Consensus 12 FCRNCLskWy~~ 23 (68)
T PF06844_consen 12 FCRNCLSKWYRE 23 (68)
T ss_dssp --HHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999999874
No 185
>PF07406 NICE-3: NICE-3 protein; InterPro: IPR010876 This family consists of several eukaryotic NICE-3 and related proteins. The gene coding for NICE-3 is part of the epidermal differentiation complex (EDC), which comprises a large number of genes that are of crucial importance for the maturation of the human epidermis []. The function of NICE-3 is unknown.
Probab=34.27 E-value=49 Score=29.66 Aligned_cols=11 Identities=18% Similarity=0.138 Sum_probs=6.2
Q ss_pred cchhhHHHHHh
Q 022509 106 FHAFCVDSWLT 116 (296)
Q Consensus 106 FH~~CId~WL~ 116 (296)
-..+-+..||.
T Consensus 124 ~~G~~~R~~L~ 134 (186)
T PF07406_consen 124 LPGENFRSYLL 134 (186)
T ss_pred cccccHHHHHH
Confidence 33455677773
No 186
>PF11044 TMEMspv1-c74-12: Plectrovirus spv1-c74 ORF 12 transmembrane protein; InterPro: IPR022743 This is a group of proteins expressed by Plectroviruses. The Plectroviruses are single-stranded DNA viruses belonging to the Inoviridae. This entry represents putative transmembrane proteins of unknown function.
Probab=34.27 E-value=66 Score=22.53 Aligned_cols=30 Identities=20% Similarity=0.438 Sum_probs=12.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 022509 14 WSIMAISFISLLAMSAVLATCFFVRRHRIR 43 (296)
Q Consensus 14 w~iliI~fi~Ll~i~~vl~i~~~i~r~r~r 43 (296)
|...++.+++++.+++-+.+.++..-+++|
T Consensus 4 wlt~iFsvvIil~If~~iGl~IyQkikqIr 33 (49)
T PF11044_consen 4 WLTTIFSVVIILGIFAWIGLSIYQKIKQIR 33 (49)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444443333333
No 187
>PF06024 DUF912: Nucleopolyhedrovirus protein of unknown function (DUF912); InterPro: IPR009261 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf78; it is a family of uncharacterised viral proteins.
Probab=34.26 E-value=24 Score=28.29 Aligned_cols=32 Identities=25% Similarity=0.247 Sum_probs=17.1
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 022509 13 AWSIMAISFISLLAMSAVLATCFFVRRHRIRR 44 (296)
Q Consensus 13 ~w~iliI~fi~Ll~i~~vl~i~~~i~r~r~rr 44 (296)
.+....+++++++++++++++++.+...-+.|
T Consensus 57 ~~~~~~iili~lls~v~IlVily~IyYFVILR 88 (101)
T PF06024_consen 57 KQNNGNIILISLLSFVCILVILYAIYYFVILR 88 (101)
T ss_pred ccccccchHHHHHHHHHHHHHHhhheEEEEEe
Confidence 34455566666666665555555554444433
No 188
>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;
Probab=33.95 E-value=29 Score=24.10 Aligned_cols=36 Identities=14% Similarity=0.433 Sum_probs=25.1
Q ss_pred CCccceecccccCCCceE-EeCCCCccchhhHHHHHh
Q 022509 81 SRTCAICLEDYSVGEKLR-ILPCRHKFHAFCVDSWLT 116 (296)
Q Consensus 81 ~~~CaICLe~f~~~d~vr-~LpCgH~FH~~CId~WL~ 116 (296)
...|.+|-..|.....-. --.||++|+.+|......
T Consensus 2 ~~~C~~C~~~F~~~~rk~~Cr~Cg~~~C~~C~~~~~~ 38 (57)
T cd00065 2 ASSCMGCGKPFTLTRRRHHCRNCGRIFCSKCSSNRIP 38 (57)
T ss_pred cCcCcccCccccCCccccccCcCcCCcChHHcCCeee
Confidence 357999988887643222 223999999999876544
No 189
>PRK06531 yajC preprotein translocase subunit YajC; Validated
Probab=33.86 E-value=21 Score=29.52 Aligned_cols=9 Identities=11% Similarity=0.194 Sum_probs=4.8
Q ss_pred cchhhHHHH
Q 022509 106 FHAFCVDSW 114 (296)
Q Consensus 106 FH~~CId~W 114 (296)
|.+.-|..-
T Consensus 74 v~r~AI~~V 82 (113)
T PRK06531 74 FELAAIKRV 82 (113)
T ss_pred EEhhHhhhh
Confidence 555555543
No 190
>PHA02692 hypothetical protein; Provisional
Probab=33.80 E-value=68 Score=24.46 Aligned_cols=20 Identities=10% Similarity=0.263 Sum_probs=9.4
Q ss_pred ccchhhhHHHHHHHHHHHHH
Q 022509 11 NSAWSIMAISFISLLAMSAV 30 (296)
Q Consensus 11 ~s~w~iliI~fi~Ll~i~~v 30 (296)
...|.+++++++++++++++
T Consensus 42 ~~~~~~~ii~~~~~~~~~vl 61 (70)
T PHA02692 42 GVPWTTVFLIGLIAAAIGVL 61 (70)
T ss_pred CcchHHHHHHHHHHHHHHHH
Confidence 34455555554444433333
No 191
>PF14979 TMEM52: Transmembrane 52
Probab=33.29 E-value=50 Score=28.75 Aligned_cols=10 Identities=40% Similarity=0.747 Sum_probs=3.9
Q ss_pred hhhhHHHHHH
Q 022509 14 WSIMAISFIS 23 (296)
Q Consensus 14 w~iliI~fi~ 23 (296)
|-|.+|++++
T Consensus 20 WyIwLill~~ 29 (154)
T PF14979_consen 20 WYIWLILLIG 29 (154)
T ss_pred hHHHHHHHHH
Confidence 4443333333
No 192
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=32.80 E-value=16 Score=35.22 Aligned_cols=50 Identities=24% Similarity=0.553 Sum_probs=39.0
Q ss_pred CCCccceecccccCCCceEEeCCCCccchhhHHHHHhhCCCCCCccccccCCC
Q 022509 80 TSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDARTS 132 (296)
Q Consensus 80 ~~~~CaICLe~f~~~d~vr~LpCgH~FH~~CId~WL~~~~~tCPlCR~~i~~~ 132 (296)
....|-||...+...+... .|.|.|+..|...|....+ .||.||..+.+.
T Consensus 104 ~~~~~~~~~g~l~vpt~~q--g~w~qf~~~~p~~~~~~~~-~~~d~~~~~~pv 153 (324)
T KOG0824|consen 104 DHDICYICYGKLTVPTRIQ--GCWHQFCYVCPKSNFAMGN-DCPDCRGKISPV 153 (324)
T ss_pred CccceeeeeeeEEeccccc--CceeeeeecCCchhhhhhh-ccchhhcCcCce
Confidence 4578999999987765332 3999999999999999844 499998765443
No 194
>PLN02195 cellulose synthase A
Probab=32.39 E-value=57 Score=36.29 Aligned_cols=52 Identities=19% Similarity=0.395 Sum_probs=38.0
Q ss_pred CCCccceecccccCCC--c--eEEeCCCCccchhhHHHHHhhCCCCCCccccccCC
Q 022509 80 TSRTCAICLEDYSVGE--K--LRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDART 131 (296)
Q Consensus 80 ~~~~CaICLe~f~~~d--~--vr~LpCgH~FH~~CId~WL~~~~~tCPlCR~~i~~ 131 (296)
+...|.||-|++...+ + |..-.|+---|+.|.+==-+.++..||-|+..+.+
T Consensus 5 ~~~~c~~cgd~~~~~~~g~~fvaC~eC~~pvCrpCyeyer~eg~q~CpqCkt~Yk~ 60 (977)
T PLN02195 5 GAPICATCGEEVGVDSNGEAFVACHECSYPLCKACLEYEIKEGRKVCLRCGGPYDA 60 (977)
T ss_pred CCccceecccccCcCCCCCeEEEeccCCCccccchhhhhhhcCCccCCccCCcccc
Confidence 4578999999876543 2 23334888899999965455567779999988873
No 195
>PF07204 Orthoreo_P10: Orthoreovirus membrane fusion protein p10; InterPro: IPR009854 This family consists of several Orthoreovirus membrane fusion protein p10 sequences. p10 is thought to be a multifunctional protein that plays a key role in virus-host interaction [].
Probab=32.12 E-value=34 Score=27.57 Aligned_cols=25 Identities=16% Similarity=0.303 Sum_probs=12.6
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHH
Q 022509 12 SAWSIMAISFISLLAMSAVLATCFF 36 (296)
Q Consensus 12 s~w~iliI~fi~Ll~i~~vl~i~~~ 36 (296)
..|.+++..-.++++++++.++++.
T Consensus 40 ayWpyLA~GGG~iLilIii~Lv~CC 64 (98)
T PF07204_consen 40 AYWPYLAAGGGLILILIIIALVCCC 64 (98)
T ss_pred hhhHHhhccchhhhHHHHHHHHHHh
Confidence 3577776665444444443333333
No 196
>PHA02844 putative transmembrane protein; Provisional
Probab=31.88 E-value=54 Score=25.29 Aligned_cols=9 Identities=22% Similarity=0.239 Sum_probs=4.1
Q ss_pred cchhhhHHH
Q 022509 12 SAWSIMAIS 20 (296)
Q Consensus 12 s~w~iliI~ 20 (296)
..|.+++|+
T Consensus 46 ~~~~~~ii~ 54 (75)
T PHA02844 46 SSTKIWILT 54 (75)
T ss_pred hhHHHHHHH
Confidence 345544443
No 197
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.70 E-value=35 Score=32.23 Aligned_cols=34 Identities=15% Similarity=0.191 Sum_probs=28.0
Q ss_pred CCCccceecccccCCCceEEeCCCCccchhhHHHHHh
Q 022509 80 TSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLT 116 (296)
Q Consensus 80 ~~~~CaICLe~f~~~d~vr~LpCgH~FH~~CId~WL~ 116 (296)
..+.|..||..+.+. .+.+=||+|+++||-+.+.
T Consensus 42 ~FdcCsLtLqPc~dP---vit~~GylfdrEaILe~il 75 (303)
T KOG3039|consen 42 PFDCCSLTLQPCRDP---VITPDGYLFDREAILEYIL 75 (303)
T ss_pred CcceeeeecccccCC---ccCCCCeeeeHHHHHHHHH
Confidence 458999999998766 5666799999999988764
No 198
>PF12606 RELT: Tumour necrosis factor receptor superfamily member 19; InterPro: IPR022248 The members of tumor necrosis factor receptor (TNFR) superfamily have been designated as the "guardians of the immune system" due to their roles in immune cell proliferation, differentiation, activation, and death (apoptosis). RELT (receptor expressed in lymphoid tissues) is a member of the TNFR superfamily. The messenger RNA of RELT is especially abundant in hematologic tissues such as spleen, lymph node, and peripheral blood leukocytes as well as in leukemias and lymphomas. RELT is able to activate the NF-kappaB pathway and selectively binds tumor necrosis factor receptor-associated factor 1 []. RELT like proteins 1 and 2 (RELL1 and RELL2) are two RELT homologues that bind to RELT. The expression of RELL1 at the mRNA level is ubiquitous, whereas expression of RELL2 mRNA is more restricted to particular tissues [].
Probab=31.26 E-value=59 Score=23.13 Aligned_cols=17 Identities=12% Similarity=0.084 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHhhhhh
Q 022509 27 MSAVLATCFFVRRHRIR 43 (296)
Q Consensus 27 i~~vl~i~~~i~r~r~r 43 (296)
+++.+.++-..++.-.|
T Consensus 14 ~lLg~~I~~~~K~ygYk 30 (50)
T PF12606_consen 14 GLLGLSICTTLKAYGYK 30 (50)
T ss_pred HHHHHHHHHHhhccccc
Confidence 33334444444444343
No 199
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain
Probab=30.67 E-value=30 Score=27.47 Aligned_cols=32 Identities=25% Similarity=0.584 Sum_probs=22.8
Q ss_pred CCCccceecccccCCCceEEeC--CCCccchhhHHH
Q 022509 80 TSRTCAICLEDYSVGEKLRILP--CRHKFHAFCVDS 113 (296)
Q Consensus 80 ~~~~CaICLe~f~~~d~vr~Lp--CgH~FH~~CId~ 113 (296)
....|.||... .+-.++--. |...||..|...
T Consensus 54 ~~~~C~iC~~~--~G~~i~C~~~~C~~~fH~~CA~~ 87 (110)
T PF13832_consen 54 FKLKCSICGKS--GGACIKCSHPGCSTAFHPTCARK 87 (110)
T ss_pred cCCcCcCCCCC--CceeEEcCCCCCCcCCCHHHHHH
Confidence 45899999988 333333333 788999999865
No 200
>KOG1094 consensus Discoidin domain receptor DDR1 [Signal transduction mechanisms]
Probab=30.24 E-value=69 Score=34.18 Aligned_cols=8 Identities=13% Similarity=0.069 Sum_probs=3.0
Q ss_pred ccccccCC
Q 022509 228 MSSHSIGY 235 (296)
Q Consensus 228 ~~~~~~~~ 235 (296)
+=.|++|-
T Consensus 596 NIveLvGV 603 (807)
T KOG1094|consen 596 NIVELLGV 603 (807)
T ss_pred CeeEEEee
Confidence 33333333
No 201
>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=30.10 E-value=29 Score=30.39 Aligned_cols=47 Identities=30% Similarity=0.512 Sum_probs=32.2
Q ss_pred ceecccccCCCceEEeC-CCCccchhhHHHHHhhCCCCCCccccccCCCCCC
Q 022509 85 AICLEDYSVGEKLRILP-CRHKFHAFCVDSWLTSWRTFCPVCKRDARTSTGE 135 (296)
Q Consensus 85 aICLe~f~~~d~vr~Lp-CgH~FH~~CId~WL~~~~~tCPlCR~~i~~~~~~ 135 (296)
.||+.--...+....-| =.+.||.+|-.+-+.. ||.|..+|...-..
T Consensus 8 qiC~NGH~~t~~~~~~p~~~~~fC~kCG~~tI~~----Cp~C~~~IrG~y~v 55 (158)
T PF10083_consen 8 QICLNGHVITDSYDKNPELREKFCSKCGAKTITS----CPNCSTPIRGDYHV 55 (158)
T ss_pred HHccCccccccccccCchHHHHHHHHhhHHHHHH----CcCCCCCCCCceec
Confidence 36766655544443333 3567999999997776 99999988765443
No 202
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=29.70 E-value=18 Score=36.22 Aligned_cols=53 Identities=23% Similarity=0.499 Sum_probs=0.0
Q ss_pred CCCccceecccccC-------------CC---ceEEeCCCCccchhhHHHHHhh--------CCCCCCccccccCCC
Q 022509 80 TSRTCAICLEDYSV-------------GE---KLRILPCRHKFHAFCVDSWLTS--------WRTFCPVCKRDARTS 132 (296)
Q Consensus 80 ~~~~CaICLe~f~~-------------~d---~vr~LpCgH~FH~~CId~WL~~--------~~~tCPlCR~~i~~~ 132 (296)
...+|++|+..-.- +. ...--||||+-=++..+-|-+. -+..||.|-..+...
T Consensus 327 ~~r~CPlCr~~g~~V~L~mG~E~afyvD~~~pthaF~PCGHv~SekTa~yWs~i~lPhGt~~f~a~CPFCa~~L~g~ 403 (416)
T PF04710_consen 327 RSRTCPLCRQVGPYVPLWMGCEPAFYVDSGPPTHAFNPCGHVCSEKTAKYWSQIPLPHGTHAFHAACPFCATPLDGE 403 (416)
T ss_dssp -----------------------------------------------------------------------------
T ss_pred ccccCCCccccCCceeEeeccccceeecCCCCceeecccccccchhhhhhhhcCCCCCCcccccccCCcccCcccCC
Confidence 36899999965211 10 1234579999999999999774 123599998777643
No 203
>PHA02975 hypothetical protein; Provisional
Probab=29.39 E-value=93 Score=23.64 Aligned_cols=13 Identities=31% Similarity=0.263 Sum_probs=6.6
Q ss_pred CccchhhhHHHHH
Q 022509 10 ENSAWSIMAISFI 22 (296)
Q Consensus 10 ~~s~w~iliI~fi 22 (296)
....|.+++|+++
T Consensus 40 ~~~~~~~~ii~i~ 52 (69)
T PHA02975 40 KSSLSIILIIFII 52 (69)
T ss_pred CCchHHHHHHHHH
Confidence 3455665555533
No 204
>PF15176 LRR19-TM: Leucine-rich repeat family 19 TM domain
Probab=28.82 E-value=1.3e+02 Score=24.47 Aligned_cols=16 Identities=13% Similarity=0.439 Sum_probs=8.5
Q ss_pred CccchhhhHHHHHHHH
Q 022509 10 ENSAWSIMAISFISLL 25 (296)
Q Consensus 10 ~~s~w~iliI~fi~Ll 25 (296)
....|.+++-+++..+
T Consensus 13 ~g~sW~~LVGVv~~al 28 (102)
T PF15176_consen 13 GGRSWPFLVGVVVTAL 28 (102)
T ss_pred CCcccHhHHHHHHHHH
Confidence 3556777654443333
No 205
>PF04277 OAD_gamma: Oxaloacetate decarboxylase, gamma chain ; InterPro: IPR005899 This family comprises distantly related, low complexity, hydrophobic small subunits of several related sodium ion-pumping decarboxylases. These include oxaloacetate decarboxylase gamma subunit and methylmalonyl-CoA decarboxylase delta subunit [].; GO: 0008948 oxaloacetate decarboxylase activity, 0015081 sodium ion transmembrane transporter activity, 0071436 sodium ion export, 0016020 membrane
Probab=28.71 E-value=1.1e+02 Score=22.85 Aligned_cols=23 Identities=22% Similarity=0.241 Sum_probs=14.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHH
Q 022509 15 SIMAISFISLLAMSAVLATCFFV 37 (296)
Q Consensus 15 ~iliI~fi~Ll~i~~vl~i~~~i 37 (296)
.-|.++|++|+++.+++.++-.+
T Consensus 10 ~Gm~iVF~~L~lL~~~i~l~~~~ 32 (79)
T PF04277_consen 10 IGMGIVFLVLILLILVISLMSKL 32 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666666666666666655555
No 206
>COG4847 Uncharacterized protein conserved in archaea [Function unknown]
Probab=28.68 E-value=46 Score=26.92 Aligned_cols=35 Identities=17% Similarity=0.329 Sum_probs=29.1
Q ss_pred CCccceecccccCCCceEEeCCCCccchhhHHHHHh
Q 022509 81 SRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLT 116 (296)
Q Consensus 81 ~~~CaICLe~f~~~d~vr~LpCgH~FH~~CId~WL~ 116 (296)
...|.||-+.+..+++..-.+ .-.-|.+|+..=..
T Consensus 6 ewkC~VCg~~iieGqkFTF~~-kGsVH~eCl~~s~~ 40 (103)
T COG4847 6 EWKCYVCGGTIIEGQKFTFTK-KGSVHYECLAESKR 40 (103)
T ss_pred eeeEeeeCCEeeeccEEEEee-CCcchHHHHHHHHh
Confidence 368999999999999888887 66789999977544
No 207
>PF15069 FAM163: FAM163 family
Probab=28.47 E-value=98 Score=26.75 Aligned_cols=17 Identities=35% Similarity=0.567 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q 022509 19 ISFISLLAMSAVLATCF 35 (296)
Q Consensus 19 I~fi~Ll~i~~vl~i~~ 35 (296)
+++++||.|++||+.|-
T Consensus 13 LAtVILLcIIaVLCYCR 29 (143)
T PF15069_consen 13 LATVILLCIIAVLCYCR 29 (143)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 34444444554444444
No 208
>PHA03054 IMV membrane protein; Provisional
Probab=28.00 E-value=1e+02 Score=23.61 Aligned_cols=10 Identities=20% Similarity=0.338 Sum_probs=4.8
Q ss_pred ccchhhhHHH
Q 022509 11 NSAWSIMAIS 20 (296)
Q Consensus 11 ~s~w~iliI~ 20 (296)
...|.+++++
T Consensus 45 ~~~~~~~ii~ 54 (72)
T PHA03054 45 CWGWYWLIII 54 (72)
T ss_pred CchHHHHHHH
Confidence 3445555444
No 209
>PF14979 TMEM52: Transmembrane 52
Probab=27.58 E-value=99 Score=26.95 Aligned_cols=18 Identities=33% Similarity=0.604 Sum_probs=7.7
Q ss_pred chhhhHHHHHHHHHHHHH
Q 022509 13 AWSIMAISFISLLAMSAV 30 (296)
Q Consensus 13 ~w~iliI~fi~Ll~i~~v 30 (296)
+|.++++++.+|+..+..
T Consensus 22 IwLill~~~llLLCG~ta 39 (154)
T PF14979_consen 22 IWLILLIGFLLLLCGLTA 39 (154)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444333
No 210
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=27.30 E-value=71 Score=33.11 Aligned_cols=6 Identities=17% Similarity=0.711 Sum_probs=2.4
Q ss_pred HHHHhh
Q 022509 35 FFVRRH 40 (296)
Q Consensus 35 ~~i~r~ 40 (296)
++++++
T Consensus 21 ~~~rr~ 26 (569)
T PRK04778 21 LILRKR 26 (569)
T ss_pred HHHHHH
Confidence 444433
No 211
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=26.84 E-value=27 Score=24.46 Aligned_cols=14 Identities=36% Similarity=0.638 Sum_probs=10.1
Q ss_pred CCccceecccccCC
Q 022509 81 SRTCAICLEDYSVG 94 (296)
Q Consensus 81 ~~~CaICLe~f~~~ 94 (296)
...|+.|-++|...
T Consensus 2 ~f~CP~C~~~~~~~ 15 (54)
T PF05605_consen 2 SFTCPYCGKGFSES 15 (54)
T ss_pred CcCCCCCCCccCHH
Confidence 46799999866543
No 212
>PHA02819 hypothetical protein; Provisional
Probab=26.54 E-value=96 Score=23.69 Aligned_cols=9 Identities=11% Similarity=-0.064 Sum_probs=4.3
Q ss_pred cchhhhHHH
Q 022509 12 SAWSIMAIS 20 (296)
Q Consensus 12 s~w~iliI~ 20 (296)
..|.+++|+
T Consensus 44 ~~~~~~ii~ 52 (71)
T PHA02819 44 FLRYYLIIG 52 (71)
T ss_pred hhHHHHHHH
Confidence 345555444
No 213
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=26.48 E-value=37 Score=21.58 Aligned_cols=9 Identities=44% Similarity=1.036 Sum_probs=6.3
Q ss_pred CCCCCcccc
Q 022509 119 RTFCPVCKR 127 (296)
Q Consensus 119 ~~tCPlCR~ 127 (296)
.-.||+|..
T Consensus 17 ~~~CP~Cg~ 25 (33)
T cd00350 17 PWVCPVCGA 25 (33)
T ss_pred CCcCcCCCC
Confidence 345999965
No 214
>PF00130 C1_1: Phorbol esters/diacylglycerol binding domain (C1 domain); InterPro: IPR002219 Diacylglycerol (DAG) is an important second messenger. Phorbol esters (PE) are analogues of DAG and potent tumour promoters that cause a variety of physiological changes when administered to both cells and tissues. DAG activates a family of serine/threonine protein kinases, collectively known as protein kinase C (PKC) []. Phorbol esters can directly stimulate PKC. The N-terminal region of PKC, known as C1, has been shown [] to bind PE and DAG in a phospholipid and zinc-dependent fashion. The C1 region contains one or two copies (depending on the isozyme of PKC) of a cysteine-rich domain, which is about 50 amino-acid residues long, and which is essential for DAG/PE-binding. The DAG/PE-binding domain binds two zinc ions; the ligands of these metal ions are probably the six cysteines and two histidines that are conserved in this domain.; GO: 0035556 intracellular signal transduction; PDB: 1RFH_A 2FNF_X 3PFQ_A 1PTQ_A 1PTR_A 2VRW_B 1XA6_A 2ENN_A 1TBN_A 1TBO_A ....
Probab=26.21 E-value=30 Score=23.70 Aligned_cols=34 Identities=18% Similarity=0.283 Sum_probs=25.5
Q ss_pred CCCccceecccc--cCCCceEEeCCCCccchhhHHH
Q 022509 80 TSRTCAICLEDY--SVGEKLRILPCRHKFHAFCVDS 113 (296)
Q Consensus 80 ~~~~CaICLe~f--~~~d~vr~LpCgH~FH~~CId~ 113 (296)
....|.+|.+.+ ...+.++-..|+=..|++|++.
T Consensus 10 ~~~~C~~C~~~i~g~~~~g~~C~~C~~~~H~~C~~~ 45 (53)
T PF00130_consen 10 KPTYCDVCGKFIWGLGKQGYRCSWCGLVCHKKCLSK 45 (53)
T ss_dssp STEB-TTSSSBECSSSSCEEEETTTT-EEETTGGCT
T ss_pred CCCCCcccCcccCCCCCCeEEECCCCChHhhhhhhh
Confidence 357899999998 4455677777999999999876
No 215
>PF07010 Endomucin: Endomucin; InterPro: IPR010740 This family consists of several mammalian endomucin proteins. Endomucin is an early endothelial-specific antigen that is also expressed on putative hematopoietic progenitor cells.
Probab=25.95 E-value=1e+02 Score=28.76 Aligned_cols=38 Identities=8% Similarity=0.158 Sum_probs=16.6
Q ss_pred CCCCccchhhhHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 022509 7 PSFENSAWSIMAISFISLLAMSAVLATCFFVRRHRIRR 44 (296)
Q Consensus 7 p~~~~s~w~iliI~fi~Ll~i~~vl~i~~~i~r~r~rr 44 (296)
|.+...+..++|.++++.+.++++++++.++++..-..
T Consensus 184 pS~S~vilpvvIaliVitl~vf~LvgLyr~C~k~dPg~ 221 (259)
T PF07010_consen 184 PSYSSVILPVVIALIVITLSVFTLVGLYRMCWKTDPGT 221 (259)
T ss_pred ccccchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCC
Confidence 33444444444444444444444444444444444333
No 216
>PF13314 DUF4083: Domain of unknown function (DUF4083)
Probab=25.94 E-value=96 Score=22.81 Aligned_cols=6 Identities=50% Similarity=0.838 Sum_probs=2.3
Q ss_pred HHHhhh
Q 022509 36 FVRRHR 41 (296)
Q Consensus 36 ~i~r~r 41 (296)
++++-.
T Consensus 26 ~IRri~ 31 (58)
T PF13314_consen 26 FIRRIL 31 (58)
T ss_pred HHHHHH
Confidence 344333
No 217
>PRK05585 yajC preprotein translocase subunit YajC; Validated
Probab=25.58 E-value=50 Score=26.90 Aligned_cols=8 Identities=0% Similarity=0.144 Sum_probs=3.8
Q ss_pred cchhhHHH
Q 022509 106 FHAFCVDS 113 (296)
Q Consensus 106 FH~~CId~ 113 (296)
|.+..|..
T Consensus 89 ~~r~aI~~ 96 (106)
T PRK05585 89 IQKSAIAA 96 (106)
T ss_pred EEhHHhhh
Confidence 44544444
No 218
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=23.89 E-value=72 Score=25.29 Aligned_cols=19 Identities=5% Similarity=0.349 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHhhhhhhc
Q 022509 27 MSAVLATCFFVRRHRIRRE 45 (296)
Q Consensus 27 i~~vl~i~~~i~r~r~rr~ 45 (296)
++++++.+.+++-++.+++
T Consensus 13 v~~~i~~y~~~k~~ka~~~ 31 (87)
T PF10883_consen 13 VVALILAYLWWKVKKAKKQ 31 (87)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444443
No 219
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=23.80 E-value=11 Score=35.53 Aligned_cols=45 Identities=24% Similarity=0.437 Sum_probs=18.5
Q ss_pred CCccceecccccCCCceEEe---CCCCccchhhHHHHHhhCCCCCCcccc
Q 022509 81 SRTCAICLEDYSVGEKLRIL---PCRHKFHAFCVDSWLTSWRTFCPVCKR 127 (296)
Q Consensus 81 ~~~CaICLe~f~~~d~vr~L---pCgH~FH~~CId~WL~~~~~tCPlCR~ 127 (296)
...|+||-..-.... ++.- -=.|.+|.-|-.+|--. +..||.|-.
T Consensus 172 ~g~CPvCGs~P~~s~-l~~~~~~G~R~L~Cs~C~t~W~~~-R~~Cp~Cg~ 219 (290)
T PF04216_consen 172 RGYCPVCGSPPVLSV-LRGGEREGKRYLHCSLCGTEWRFV-RIKCPYCGN 219 (290)
T ss_dssp -SS-TTT---EEEEE-EE------EEEEEETTT--EEE---TTS-TTT--
T ss_pred CCcCCCCCCcCceEE-EecCCCCccEEEEcCCCCCeeeec-CCCCcCCCC
Confidence 479999987643221 0000 01345667788888665 667999943
No 220
>PF03229 Alpha_GJ: Alphavirus glycoprotein J; InterPro: IPR004913 The exact function of the herpesvirus glycoprotein J is unknown, but it appears to play a role in the inhibition of apotosis of the host cell [].; GO: 0019050 suppression by virus of host apoptosis
Probab=23.64 E-value=1.3e+02 Score=25.33 Aligned_cols=27 Identities=15% Similarity=0.079 Sum_probs=10.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 022509 17 MAISFISLLAMSAVLATCFFVRRHRIR 43 (296)
Q Consensus 17 liI~fi~Ll~i~~vl~i~~~i~r~r~r 43 (296)
+-+++..|+++.+..+..+.+.+++.|
T Consensus 86 Lp~VIGGLcaL~LaamGA~~LLrR~cR 112 (126)
T PF03229_consen 86 LPLVIGGLCALTLAAMGAGALLRRCCR 112 (126)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444433333333333333333
No 221
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=23.59 E-value=1.4e+02 Score=20.53 Aligned_cols=9 Identities=0% Similarity=0.213 Sum_probs=3.4
Q ss_pred HHHHHHHHH
Q 022509 30 VLATCFFVR 38 (296)
Q Consensus 30 vl~i~~~i~ 38 (296)
+++++++..
T Consensus 22 F~gi~~w~~ 30 (49)
T PF05545_consen 22 FIGIVIWAY 30 (49)
T ss_pred HHHHHHHHH
Confidence 333333333
No 222
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=23.45 E-value=1.2e+02 Score=22.30 Aligned_cols=45 Identities=27% Similarity=0.609 Sum_probs=29.3
Q ss_pred CccceecccccCCC-ceEEeCCC--CccchhhHHHHHhhCCCCCCccccccCC
Q 022509 82 RTCAICLEDYSVGE-KLRILPCR--HKFHAFCVDSWLTSWRTFCPVCKRDART 131 (296)
Q Consensus 82 ~~CaICLe~f~~~d-~vr~LpCg--H~FH~~CId~WL~~~~~tCPlCR~~i~~ 131 (296)
..|-.|-.++..+. ..++ |. ..|+.+|.+.-|. ..||.|-..+..
T Consensus 6 pnCE~C~~dLp~~s~~A~I--CSfECTFC~~C~e~~l~---~~CPNCgGelv~ 53 (57)
T PF06906_consen 6 PNCECCDKDLPPDSPEAYI--CSFECTFCADCAETMLN---GVCPNCGGELVR 53 (57)
T ss_pred CCccccCCCCCCCCCcceE--EeEeCcccHHHHHHHhc---CcCcCCCCcccc
Confidence 34666767766654 2222 43 3599999999764 349999766654
No 223
>smart00647 IBR In Between Ring fingers. the domains occurs between pairs og RING fingers
Probab=23.34 E-value=10 Score=26.71 Aligned_cols=15 Identities=27% Similarity=0.660 Sum_probs=13.0
Q ss_pred CCCCccchhhHHHHH
Q 022509 101 PCRHKFHAFCVDSWL 115 (296)
Q Consensus 101 pCgH~FH~~CId~WL 115 (296)
.|+|.|+..|...|-
T Consensus 45 ~C~~~fC~~C~~~~H 59 (64)
T smart00647 45 KCGFSFCFRCKVPWH 59 (64)
T ss_pred CCCCeECCCCCCcCC
Confidence 489999999999883
No 224
>PF15353 HECA: Headcase protein family homologue
Probab=23.25 E-value=59 Score=26.74 Aligned_cols=15 Identities=20% Similarity=0.583 Sum_probs=12.7
Q ss_pred CCCccchhhHHHHHh
Q 022509 102 CRHKFHAFCVDSWLT 116 (296)
Q Consensus 102 CgH~FH~~CId~WL~ 116 (296)
.++..|.+|++.|=.
T Consensus 40 ~~~~MH~~CF~~wE~ 54 (107)
T PF15353_consen 40 FGQYMHRECFEKWED 54 (107)
T ss_pred CCCchHHHHHHHHHH
Confidence 488999999999943
No 225
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=22.80 E-value=25 Score=35.26 Aligned_cols=36 Identities=19% Similarity=0.439 Sum_probs=27.4
Q ss_pred CccceecccccCCCce---EE--eCCCCccchhhHHHHHhh
Q 022509 82 RTCAICLEDYSVGEKL---RI--LPCRHKFHAFCVDSWLTS 117 (296)
Q Consensus 82 ~~CaICLe~f~~~d~v---r~--LpCgH~FH~~CId~WL~~ 117 (296)
..|+.|.-..+.++.. .. ..|+|.||..|+..|-..
T Consensus 227 k~CP~c~~~iek~~gc~~~~~~~~~c~~~FCw~Cl~~~~~h 267 (444)
T KOG1815|consen 227 KECPKCKVPIEKDGGCNHMTCKSASCKHEFCWVCLASLSDH 267 (444)
T ss_pred ccCCCcccchhccCCccccccccCCcCCeeceeeecccccc
Confidence 5599999998876522 22 249999999999999775
No 226
>PF15345 TMEM51: Transmembrane protein 51
Probab=22.55 E-value=54 Score=30.52 Aligned_cols=31 Identities=23% Similarity=0.387 Sum_probs=17.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhhhccc
Q 022509 17 MAISFISLLAMSAVLATCFFVRRHRIRREAP 47 (296)
Q Consensus 17 liI~fi~Ll~i~~vl~i~~~i~r~r~rr~~~ 47 (296)
++++++..-+++++|-+|+.++.+|.+++..
T Consensus 60 VAyVLVG~Gv~LLLLSICL~IR~KRr~rq~~ 90 (233)
T PF15345_consen 60 VAYVLVGSGVALLLLSICLSIRDKRRRRQGE 90 (233)
T ss_pred EEEehhhHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3444444455555666677766666555433
No 227
>COG2991 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.15 E-value=79 Score=24.36 Aligned_cols=27 Identities=19% Similarity=0.385 Sum_probs=18.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 022509 17 MAISFISLLAMSAVLATCFFVRRHRIR 43 (296)
Q Consensus 17 liI~fi~Ll~i~~vl~i~~~i~r~r~r 43 (296)
+++.|++++++++.+.+-+++.|+-++
T Consensus 4 ~lltFg~Fllvi~gMsiG~I~krk~I~ 30 (77)
T COG2991 4 FLLTFGIFLLVIAGMSIGYIFKRKSIK 30 (77)
T ss_pred HHHHHHHHHHHHHHHhHhhheeccccc
Confidence 456677777777777777776665544
No 228
>COG4736 CcoQ Cbb3-type cytochrome oxidase, subunit 3 [Posttranslational modification, protein turnover, chaperones]
Probab=21.80 E-value=1.3e+02 Score=22.24 Aligned_cols=17 Identities=18% Similarity=0.247 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHhh
Q 022509 24 LLAMSAVLATCFFVRRH 40 (296)
Q Consensus 24 Ll~i~~vl~i~~~i~r~ 40 (296)
+++.+++++++++.++.
T Consensus 16 ~~~~l~fiavi~~ayr~ 32 (60)
T COG4736 16 IAFTLFFIAVIYFAYRP 32 (60)
T ss_pred HHHHHHHHHHHHHHhcc
Confidence 33333334444444443
No 229
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=21.43 E-value=55 Score=26.73 Aligned_cols=46 Identities=22% Similarity=0.549 Sum_probs=28.4
Q ss_pred CCCccceecccccC--CCceEEeCCCCccchhhHHHHHhhCCC--CCCcccc
Q 022509 80 TSRTCAICLEDYSV--GEKLRILPCRHKFHAFCVDSWLTSWRT--FCPVCKR 127 (296)
Q Consensus 80 ~~~~CaICLe~f~~--~d~vr~LpCgH~FH~~CId~WL~~~~~--tCPlCR~ 127 (296)
++..|.+|...|.- +.......|+|.+|..|-.. ..... .|-+|..
T Consensus 53 ~~~~C~~C~~~fg~l~~~~~~C~~C~~~VC~~C~~~--~~~~~~WlC~vC~k 102 (118)
T PF02318_consen 53 GERHCARCGKPFGFLFNRGRVCVDCKHRVCKKCGVY--SKKEPIWLCKVCQK 102 (118)
T ss_dssp CCSB-TTTS-BCSCTSTTCEEETTTTEEEETTSEEE--TSSSCCEEEHHHHH
T ss_pred CCcchhhhCCcccccCCCCCcCCcCCccccCccCCc--CCCCCCEEChhhHH
Confidence 56899999988744 33455556999999999544 11111 2777754
No 230
>KOG4218 consensus Nuclear hormone receptor betaFTZ-F1 [Transcription]
Probab=21.23 E-value=70 Score=31.73 Aligned_cols=48 Identities=25% Similarity=0.568 Sum_probs=26.6
Q ss_pred CCCCccceecccccCCCceEEeCC---CCccc--------hhhHHHHH----hhCCCCCCcccc
Q 022509 79 CTSRTCAICLEDYSVGEKLRILPC---RHKFH--------AFCVDSWL----TSWRTFCPVCKR 127 (296)
Q Consensus 79 ~~~~~CaICLe~f~~~d~vr~LpC---gH~FH--------~~CId~WL----~~~~~tCPlCR~ 127 (296)
..++.|++|-+... +-....|.| +-.|- -.|+++-- +..+..||.||.
T Consensus 13 dl~ElCPVCGDkVS-GYHYGLLTCESCKGFFKRTVQNnK~YtC~e~qnC~iDkTqRKRCP~CRF 75 (475)
T KOG4218|consen 13 DLGELCPVCGDKVS-GYHYGLLTCESCKGFFKRTVQNNKQYTCSEEQNCHIDKTQRKRCPSCRF 75 (475)
T ss_pred ccccccccccCccc-cceeeeeehhhhhhHHHHHhhcCcceecccccccccchHhhccCCchhH
Confidence 34689999988854 334455554 33332 23433210 112455999986
No 231
>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]. Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.
Probab=20.99 E-value=28 Score=26.07 Aligned_cols=6 Identities=33% Similarity=0.750 Sum_probs=0.0
Q ss_pred HHHHHh
Q 022509 34 CFFVRR 39 (296)
Q Consensus 34 ~~~i~r 39 (296)
+++++|
T Consensus 30 lf~iyR 35 (64)
T PF01034_consen 30 LFLIYR 35 (64)
T ss_dssp ------
T ss_pred HHHHHH
Confidence 333333
No 232
>PF04995 CcmD: Heme exporter protein D (CcmD); InterPro: IPR007078 The CcmD protein is part of a C-type cytochrome biogenesis operon []. The exact function of this protein is uncertain. It has been proposed that CcmC, CcmD and CcmE interact directly with each other, establishing a cytoplasm to periplasm haem delivery pathway for cytochrome c maturation []. This protein is found fused to CcmE in P52224 from SWISSPROT. These proteins contain a predicted transmembrane helix.; GO: 0006810 transport, 0016021 integral to membrane
Probab=20.70 E-value=1.6e+02 Score=20.10 Aligned_cols=26 Identities=27% Similarity=0.167 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhh
Q 022509 18 AISFISLLAMSAVLATCFFVRRHRIR 43 (296)
Q Consensus 18 iI~fi~Ll~i~~vl~i~~~i~r~r~r 43 (296)
..++.+.+++++.+++.....+++.+
T Consensus 8 W~sYg~t~~~l~~l~~~~~~~~r~~~ 33 (46)
T PF04995_consen 8 WSSYGVTALVLAGLIVWSLRRRRRLR 33 (46)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444433
No 233
>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only]
Probab=20.69 E-value=73 Score=32.58 Aligned_cols=46 Identities=30% Similarity=0.759 Sum_probs=28.6
Q ss_pred CCCccceeccc-ccCCCceEEeC---CCCccchhhHHHHHhh----C---CCCCCcccc
Q 022509 80 TSRTCAICLED-YSVGEKLRILP---CRHKFHAFCVDSWLTS----W---RTFCPVCKR 127 (296)
Q Consensus 80 ~~~~CaICLe~-f~~~d~vr~Lp---CgH~FH~~CId~WL~~----~---~~tCPlCR~ 127 (296)
.+.+|.+|..- ....+ ++|. |+-.||..|-....+. . .-.|=+|+.
T Consensus 167 ~n~qc~vC~~g~~~~~N--rmlqC~~C~~~fHq~Chqp~i~~~l~~D~~~~w~C~~C~~ 223 (464)
T KOG4323|consen 167 VNLQCSVCYCGGPGAGN--RMLQCDKCRQWYHQACHQPLIKDELAGDPFYEWFCDVCNR 223 (464)
T ss_pred ccceeeeeecCCcCccc--eeeeecccccHHHHHhccCCCCHhhccCccceEeehhhcc
Confidence 45679999843 33333 4444 7888999996554331 1 123888854
No 234
>PF13994 PgaD: PgaD-like protein
Probab=20.64 E-value=2.5e+02 Score=23.52 Aligned_cols=21 Identities=24% Similarity=0.175 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHhhhhh
Q 022509 23 SLLAMSAVLATCFFVRRHRIR 43 (296)
Q Consensus 23 ~Ll~i~~vl~i~~~i~r~r~r 43 (296)
++++.+++++....+.+.|.+
T Consensus 70 i~~~~a~~Li~Wa~yn~~Rf~ 90 (138)
T PF13994_consen 70 IALVNAVILILWAKYNRLRFR 90 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 333333333334444434433
No 235
>PF02060 ISK_Channel: Slow voltage-gated potassium channel; InterPro: IPR000369 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. Two types of beta subunit (KCNE and KCNAB) are presently known to associate with voltage-gated alpha subunits (Kv, KCNQ and eag-like). However, not all combinations of alpha and beta subunits are possible. The KCNE family of K+ channel subunits are membrane glycoproteins that possess a single transmembrane (TM) domain. They share no structural relationship with the alpha subunit proteins, which possess pore forming domains. The subunits appear to have a regulatory function, modulating the kinetics and voltage dependence of the alpha subunits of voltage-dependent K+ channels. KCNE subunits are formed from short polypeptides of ~130 amino acids, and are divided into five subfamilies: KCNE1 (MinK/IsK), KCNE2 (MiRP1), KCNE3 (MiRP2), KCNE4 (MiRP3) and KCNE1L (AMMECR2). ; GO: 0005249 voltage-gated potassium channel activity, 0006811 ion transport, 0016020 membrane; PDB: 2K21_A.
Probab=20.63 E-value=1.8e+02 Score=24.66 Aligned_cols=19 Identities=5% Similarity=-0.106 Sum_probs=6.5
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 022509 17 MAISFISLLAMSAVLATCF 35 (296)
Q Consensus 17 liI~fi~Ll~i~~vl~i~~ 35 (296)
+.|++++.+..++++.+++
T Consensus 45 lYIL~vmgfFgff~~gIml 63 (129)
T PF02060_consen 45 LYILVVMGFFGFFTVGIML 63 (129)
T ss_dssp -HHHHHHHHHHHHHHHHHH
T ss_pred ehHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 236
>PF06676 DUF1178: Protein of unknown function (DUF1178); InterPro: IPR009562 This family consists of several hypothetical bacterial proteins of around 150 residues in length. The function of this family is unknown.
Probab=20.55 E-value=1e+02 Score=26.68 Aligned_cols=28 Identities=36% Similarity=0.815 Sum_probs=17.6
Q ss_pred EeCC--CCccchhhHHHHHhh----------CCCCCCccccccCC
Q 022509 99 ILPC--RHKFHAFCVDSWLTS----------WRTFCPVCKRDART 131 (296)
Q Consensus 99 ~LpC--gH~FH~~CId~WL~~----------~~~tCPlCR~~i~~ 131 (296)
.|.| ||.| +.|+.. +-.+||+|-..-..
T Consensus 5 ~L~C~~gH~F-----EgWF~ss~~fd~Q~~~glv~CP~Cgs~~V~ 44 (148)
T PF06676_consen 5 DLRCENGHEF-----EGWFRSSAAFDRQQARGLVSCPVCGSTEVS 44 (148)
T ss_pred EEecCCCCcc-----ceecCCHHHHHHHHHcCCccCCCCCCCeEe
Confidence 4555 7877 567753 45679999654433
No 237
>KOG3637 consensus Vitronectin receptor, alpha subunit [Extracellular structures]
Probab=20.32 E-value=86 Score=35.21 Aligned_cols=25 Identities=16% Similarity=0.301 Sum_probs=12.4
Q ss_pred ccchhhhHHHHHHHHHHHHHHHHHH
Q 022509 11 NSAWSIMAISFISLLAMSAVLATCF 35 (296)
Q Consensus 11 ~s~w~iliI~fi~Ll~i~~vl~i~~ 35 (296)
..+|.|++-+++.||++++++++++
T Consensus 976 vp~wiIi~svl~GLLlL~llv~~Lw 1000 (1030)
T KOG3637|consen 976 VPLWIIILSVLGGLLLLALLVLLLW 1000 (1030)
T ss_pred cceeeehHHHHHHHHHHHHHHHHHH
Confidence 4556665555555554444443333
No 238
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=20.31 E-value=1.5e+02 Score=26.72 Aligned_cols=11 Identities=18% Similarity=0.718 Sum_probs=6.2
Q ss_pred cCCCCccchhh
Q 022509 6 IPSFENSAWSI 16 (296)
Q Consensus 6 ip~~~~s~w~i 16 (296)
.|.|+...|..
T Consensus 44 ~p~~~~~~~~~ 54 (204)
T PRK09174 44 FPPFDSTHYAS 54 (204)
T ss_pred CCCCcchhccH
Confidence 56666664443
No 239
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=20.27 E-value=53 Score=31.80 Aligned_cols=42 Identities=21% Similarity=0.523 Sum_probs=27.0
Q ss_pred CCCccceecccccC-------CCceEEeCCCCccchhhHHHHHhhCCCCCCcccc
Q 022509 80 TSRTCAICLEDYSV-------GEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKR 127 (296)
Q Consensus 80 ~~~~CaICLe~f~~-------~d~vr~LpCgH~FH~~CId~WL~~~~~tCPlCR~ 127 (296)
....|+||-..-.. .+..|. .+|.-|-.+|--. +..||.|-.
T Consensus 186 ~~~~CPvCGs~P~~s~v~~~~~~G~Ry-----L~CslC~teW~~~-R~~C~~Cg~ 234 (309)
T PRK03564 186 QRQFCPVCGSMPVSSVVQIGTTQGLRY-----LHCNLCESEWHVV-RVKCSNCEQ 234 (309)
T ss_pred CCCCCCCCCCcchhheeeccCCCCceE-----EEcCCCCCccccc-CccCCCCCC
Confidence 35899999876321 223343 3555577788666 667999964
Done!