Query 022509
Match_columns 296
No_of_seqs 283 out of 1884
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 06:39:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022509.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022509hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l0b_A E3 ubiquitin-protein li 99.7 6.1E-18 2.1E-22 131.6 6.5 80 51-131 10-89 (91)
2 1x4j_A Ring finger protein 38; 99.6 6.3E-17 2.1E-21 120.8 4.2 68 64-133 7-74 (75)
3 2ep4_A Ring finger protein 24; 99.6 9.8E-16 3.4E-20 113.7 6.6 57 78-135 12-68 (74)
4 2ect_A Ring finger protein 126 99.6 1E-15 3.5E-20 114.8 6.1 59 78-137 12-70 (78)
5 2kiz_A E3 ubiquitin-protein li 99.6 1.5E-15 5.3E-20 111.2 5.8 56 78-134 11-66 (69)
6 1iym_A EL5; ring-H2 finger, ub 99.6 1.6E-15 5.4E-20 106.3 3.8 50 80-130 4-54 (55)
7 1v87_A Deltex protein 2; ring- 99.6 5.8E-15 2E-19 118.2 7.2 65 80-144 24-107 (114)
8 2ecm_A Ring finger and CHY zin 99.5 2.2E-14 7.4E-19 100.3 5.0 50 80-130 4-54 (55)
9 2ecl_A Ring-box protein 2; RNF 99.5 1.6E-14 5.6E-19 110.0 4.2 51 80-131 14-76 (81)
10 2d8s_A Cellular modulator of i 99.5 4.5E-14 1.5E-18 108.2 5.8 60 78-138 12-77 (80)
11 2ea6_A Ring finger protein 4; 99.4 5E-14 1.7E-18 102.3 4.5 53 78-131 12-68 (69)
12 3ng2_A RNF4, snurf, ring finge 99.4 5.6E-14 1.9E-18 102.9 4.0 53 80-133 9-65 (71)
13 2xeu_A Ring finger protein 4; 99.4 9.9E-14 3.4E-18 99.3 3.6 52 80-132 2-57 (64)
14 3dpl_R Ring-box protein 1; ubi 99.4 2.4E-13 8.4E-18 109.3 5.0 51 79-130 35-100 (106)
15 2ecn_A Ring finger protein 141 99.4 1.8E-13 6E-18 100.4 3.6 52 78-134 12-63 (70)
16 2ct2_A Tripartite motif protei 99.4 6.7E-13 2.3E-17 100.9 5.5 54 79-132 13-69 (88)
17 2djb_A Polycomb group ring fin 99.3 8.4E-13 2.9E-17 97.7 5.7 54 79-135 13-66 (72)
18 1chc_A Equine herpes virus-1 r 99.3 6.5E-13 2.2E-17 96.7 4.9 50 80-132 4-53 (68)
19 2d8t_A Dactylidin, ring finger 99.3 2E-13 6.9E-18 100.8 1.7 51 79-133 13-63 (71)
20 2ecy_A TNF receptor-associated 99.3 1.1E-12 3.6E-17 95.4 3.7 51 79-132 13-63 (66)
21 2ysl_A Tripartite motif-contai 99.3 1.5E-12 5.2E-17 95.8 4.3 52 78-132 17-70 (73)
22 2csy_A Zinc finger protein 183 99.3 2.3E-12 7.9E-17 97.2 4.5 49 78-130 12-60 (81)
23 2yur_A Retinoblastoma-binding 99.3 4.1E-12 1.4E-16 94.6 5.7 51 79-132 13-65 (74)
24 4a0k_B E3 ubiquitin-protein li 99.3 5.7E-13 2E-17 109.1 0.6 53 78-131 45-112 (117)
25 1g25_A CDK-activating kinase a 99.3 3.2E-12 1.1E-16 92.6 4.3 53 81-133 3-57 (65)
26 2ct0_A Non-SMC element 1 homol 99.2 4.6E-12 1.6E-16 95.8 4.5 56 80-137 14-70 (74)
27 1t1h_A Gspef-atpub14, armadill 99.2 6.6E-12 2.3E-16 93.8 4.4 51 79-132 6-56 (78)
28 2ysj_A Tripartite motif-contai 99.2 1E-11 3.5E-16 89.2 5.0 45 78-125 17-63 (63)
29 2ecw_A Tripartite motif-contai 99.2 1.2E-11 4.1E-16 92.8 5.5 52 78-132 16-72 (85)
30 4ap4_A E3 ubiquitin ligase RNF 99.2 4.9E-12 1.7E-16 102.3 3.5 53 80-133 6-62 (133)
31 2ecv_A Tripartite motif-contai 99.2 1.6E-11 5.3E-16 92.2 5.0 51 78-131 16-71 (85)
32 2ecj_A Tripartite motif-contai 99.2 1.2E-11 3.9E-16 87.0 3.5 45 78-125 12-58 (58)
33 4ayc_A E3 ubiquitin-protein li 99.2 8.3E-12 2.9E-16 103.7 3.3 47 81-131 53-99 (138)
34 2egp_A Tripartite motif-contai 99.2 3.9E-12 1.4E-16 94.8 0.8 50 79-131 10-65 (79)
35 3lrq_A E3 ubiquitin-protein li 99.2 1.1E-11 3.9E-16 97.5 3.3 49 81-131 22-70 (100)
36 3ztg_A E3 ubiquitin-protein li 99.1 2.9E-11 1E-15 93.0 4.5 50 78-130 10-61 (92)
37 4ap4_A E3 ubiquitin ligase RNF 99.1 1.9E-11 6.4E-16 98.8 3.4 52 80-132 71-126 (133)
38 3fl2_A E3 ubiquitin-protein li 99.1 3.2E-11 1.1E-15 98.0 4.9 48 81-131 52-99 (124)
39 2y43_A E3 ubiquitin-protein li 99.1 4.5E-11 1.5E-15 93.4 3.5 48 81-131 22-69 (99)
40 2ckl_B Ubiquitin ligase protei 99.1 5.1E-11 1.8E-15 101.4 4.1 49 81-131 54-102 (165)
41 1e4u_A Transcriptional repress 99.1 1.2E-10 4.3E-15 88.4 5.4 55 79-134 9-65 (78)
42 2ckl_A Polycomb group ring fin 99.1 5.4E-11 1.9E-15 94.4 3.4 50 80-132 14-63 (108)
43 1z6u_A NP95-like ring finger p 99.0 1E-10 3.4E-15 99.0 4.6 49 81-132 78-126 (150)
44 1jm7_A BRCA1, breast cancer ty 99.0 1.3E-10 4.5E-15 92.0 4.0 49 81-132 21-71 (112)
45 3hct_A TNF receptor-associated 99.0 9.6E-11 3.3E-15 94.6 3.1 50 79-131 16-65 (118)
46 3l11_A E3 ubiquitin-protein li 99.0 4.7E-11 1.6E-15 95.7 0.9 48 81-131 15-62 (115)
47 1rmd_A RAG1; V(D)J recombinati 99.0 1.7E-10 5.9E-15 92.5 3.7 49 81-132 23-71 (116)
48 1bor_A Transcription factor PM 99.0 1.6E-10 5.4E-15 81.8 1.9 48 79-133 4-51 (56)
49 3knv_A TNF receptor-associated 99.0 1.7E-10 5.9E-15 96.7 2.4 51 78-131 28-78 (141)
50 2y1n_A E3 ubiquitin-protein li 98.9 4.8E-10 1.6E-14 108.4 4.0 50 80-132 331-380 (389)
51 2vje_A E3 ubiquitin-protein li 98.9 4.5E-10 1.6E-14 81.8 2.6 47 81-131 8-57 (64)
52 2kr4_A Ubiquitin conjugation f 98.8 1.7E-09 5.8E-14 83.0 4.2 49 79-131 12-60 (85)
53 2vje_B MDM4 protein; proto-onc 98.8 9.2E-10 3.1E-14 79.9 2.4 50 80-131 6-56 (63)
54 2kre_A Ubiquitin conjugation f 98.8 2.8E-09 9.7E-14 84.4 3.9 49 79-131 27-75 (100)
55 1wgm_A Ubiquitin conjugation f 98.8 3.3E-09 1.1E-13 83.7 4.2 49 79-131 20-69 (98)
56 1jm7_B BARD1, BRCA1-associated 98.8 1.4E-09 4.9E-14 87.6 1.8 44 81-130 22-66 (117)
57 2c2l_A CHIP, carboxy terminus 98.8 2.7E-09 9.4E-14 96.1 3.7 50 79-131 206-255 (281)
58 1vyx_A ORF K3, K3RING; zinc-bi 98.7 4.5E-09 1.6E-13 76.0 3.6 50 79-131 4-59 (60)
59 3k1l_B Fancl; UBC, ring, RWD, 98.7 1.3E-09 4.6E-14 103.7 0.7 55 78-132 305-374 (381)
60 3hcs_A TNF receptor-associated 98.7 3.5E-09 1.2E-13 90.3 2.7 50 79-131 16-65 (170)
61 4ic3_A E3 ubiquitin-protein li 98.7 3.1E-09 1.1E-13 79.2 1.7 43 81-131 24-67 (74)
62 1wim_A KIAA0161 protein; ring 98.6 1.4E-08 4.7E-13 78.7 2.9 49 80-128 4-61 (94)
63 2yu4_A E3 SUMO-protein ligase 98.6 1.9E-08 6.6E-13 78.3 3.7 46 80-128 6-59 (94)
64 2ea5_A Cell growth regulator w 98.6 3.2E-08 1.1E-12 72.9 4.4 46 79-132 13-59 (68)
65 2ecg_A Baculoviral IAP repeat- 98.5 2.4E-08 8.1E-13 74.4 1.9 44 81-132 25-69 (75)
66 2f42_A STIP1 homology and U-bo 98.5 3.3E-08 1.1E-12 86.3 2.5 50 79-131 104-153 (179)
67 2yho_A E3 ubiquitin-protein li 98.4 6.2E-08 2.1E-12 73.3 1.2 44 81-132 18-62 (79)
68 3htk_C E3 SUMO-protein ligase 98.3 2.8E-07 9.6E-12 84.8 2.6 50 80-131 180-232 (267)
69 3t6p_A Baculoviral IAP repeat- 98.2 2.4E-07 8.1E-12 88.4 1.2 44 80-131 294-338 (345)
70 2bay_A PRE-mRNA splicing facto 98.2 4E-07 1.4E-11 65.8 2.1 48 81-132 3-51 (61)
71 3vk6_A E3 ubiquitin-protein li 98.1 1.3E-06 4.5E-11 69.3 3.5 49 83-133 3-51 (101)
72 3nw0_A Non-structural maintena 97.9 5.4E-06 1.8E-10 75.2 3.3 55 80-136 179-234 (238)
73 2jun_A Midline-1; B-BOX, TRIM, 94.6 0.014 4.6E-07 44.9 2.1 34 81-114 3-36 (101)
74 2lri_C Autoimmune regulator; Z 94.6 0.021 7.1E-07 41.6 2.9 47 80-129 11-60 (66)
75 2ko5_A Ring finger protein Z; 94.2 0.039 1.3E-06 43.1 3.9 51 80-136 27-78 (99)
76 1we9_A PHD finger family prote 90.9 0.074 2.5E-06 37.8 1.2 49 80-128 5-58 (64)
77 2k16_A Transcription initiatio 89.5 0.07 2.4E-06 39.2 0.1 52 79-131 16-71 (75)
78 1wem_A Death associated transc 86.7 0.22 7.5E-06 36.6 1.3 49 81-130 16-72 (76)
79 2yt5_A Metal-response element- 86.2 0.18 6E-06 36.0 0.5 51 79-129 4-62 (66)
80 2jwa_A Receptor tyrosine-prote 86.1 1.2 4E-05 30.0 4.5 30 14-43 12-41 (44)
81 1mm2_A MI2-beta; PHD, zinc fin 85.8 0.15 5.1E-06 36.2 -0.1 50 78-130 6-58 (61)
82 2ysm_A Myeloid/lymphoid or mix 85.1 0.22 7.6E-06 39.1 0.7 47 80-126 6-55 (111)
83 2l5u_A Chromodomain-helicase-D 85.1 0.35 1.2E-05 34.2 1.7 47 79-128 9-58 (61)
84 1wil_A KIAA1045 protein; ring 83.5 0.51 1.7E-05 36.2 2.0 35 79-114 13-47 (89)
85 3u5n_A E3 ubiquitin-protein li 82.7 0.19 6.6E-06 43.7 -0.7 49 78-129 4-55 (207)
86 3lqh_A Histone-lysine N-methyl 81.3 0.43 1.5E-05 41.3 1.0 48 81-128 2-63 (183)
87 2yql_A PHD finger protein 21A; 81.1 0.18 6.2E-06 35.0 -1.2 46 79-127 7-55 (56)
88 3o36_A Transcription intermedi 81.0 0.33 1.1E-05 41.4 0.1 47 80-129 3-52 (184)
89 2lbm_A Transcriptional regulat 80.7 1.2 4E-05 37.1 3.4 47 78-127 60-116 (142)
90 1wev_A Riken cDNA 1110020M19; 80.7 0.44 1.5E-05 36.2 0.8 51 81-131 16-75 (88)
91 1wep_A PHF8; structural genomi 80.7 1.1 3.8E-05 33.0 3.0 49 80-129 11-64 (79)
92 1f62_A Transcription factor WS 79.1 0.59 2E-05 31.5 0.9 45 83-127 2-49 (51)
93 1weu_A Inhibitor of growth fam 78.9 0.86 2.9E-05 35.1 1.9 47 80-130 35-87 (91)
94 1weo_A Cellulose synthase, cat 78.8 3.4 0.00012 31.9 5.2 58 80-137 15-76 (93)
95 2ks1_B Epidermal growth factor 78.6 3 0.0001 27.9 4.3 13 30-42 28-40 (44)
96 2l43_A N-teminal domain from h 78.5 0.64 2.2E-05 35.4 1.1 52 80-131 24-78 (88)
97 3v43_A Histone acetyltransfera 78.2 1.6 5.4E-05 34.4 3.3 46 81-126 5-62 (112)
98 2cs3_A Protein C14ORF4, MY039 78.1 2.3 7.8E-05 32.4 3.9 37 80-117 14-52 (93)
99 2xb1_A Pygopus homolog 2, B-ce 77.3 0.35 1.2E-05 38.1 -0.8 49 81-129 3-62 (105)
100 2kgg_A Histone demethylase jar 76.9 0.85 2.9E-05 31.1 1.2 45 82-126 3-52 (52)
101 2ri7_A Nucleosome-remodeling f 76.5 0.57 1.9E-05 39.3 0.3 48 80-128 7-59 (174)
102 2puy_A PHD finger protein 21A; 76.3 0.24 8.3E-06 34.8 -1.8 48 80-130 4-54 (60)
103 1wew_A DNA-binding family prot 76.1 0.83 2.9E-05 33.8 1.1 50 80-130 15-74 (78)
104 3ql9_A Transcriptional regulat 75.7 1.8 6.3E-05 35.4 3.1 47 78-127 54-110 (129)
105 1wee_A PHD finger family prote 75.6 0.46 1.6E-05 34.6 -0.5 50 80-130 15-68 (72)
106 1wen_A Inhibitor of growth fam 75.4 1.4 4.6E-05 32.3 2.0 47 80-130 15-67 (71)
107 2l2t_A Receptor tyrosine-prote 75.0 4.4 0.00015 27.2 4.3 11 31-41 28-38 (44)
108 2lv9_A Histone-lysine N-methyl 73.5 0.77 2.6E-05 35.5 0.3 46 81-127 28-75 (98)
109 1fp0_A KAP-1 corepressor; PHD 73.4 1.6 5.5E-05 33.4 2.1 48 78-128 22-72 (88)
110 1xwh_A Autoimmune regulator; P 72.4 0.85 2.9E-05 32.6 0.3 46 80-128 7-55 (66)
111 2kwj_A Zinc finger protein DPF 71.3 1.2 4.3E-05 35.1 1.1 33 82-114 2-41 (114)
112 2vpb_A Hpygo1, pygopus homolog 71.1 2.5 8.6E-05 30.3 2.6 33 80-112 7-41 (65)
113 2ku3_A Bromodomain-containing 71.0 1.3 4.4E-05 32.4 1.0 50 79-128 14-66 (71)
114 2klu_A T-cell surface glycopro 70.8 4.5 0.00016 29.5 3.8 23 14-36 7-29 (70)
115 2knc_A Integrin alpha-IIB; tra 70.0 9.4 0.00032 26.6 5.2 20 11-30 10-29 (54)
116 3o70_A PHD finger protein 13; 68.1 0.86 2.9E-05 33.0 -0.5 48 79-127 17-66 (68)
117 3v43_A Histone acetyltransfera 67.5 1.4 4.7E-05 34.7 0.5 46 82-127 62-111 (112)
118 2ro1_A Transcription intermedi 64.4 1.1 3.8E-05 38.5 -0.6 45 81-128 2-49 (189)
119 2e6r_A Jumonji/ARID domain-con 64.3 0.68 2.3E-05 35.5 -1.8 49 80-128 15-66 (92)
120 2l8s_A Integrin alpha-1; trans 61.9 12 0.00041 26.1 4.4 21 11-31 7-27 (54)
121 2yw8_A RUN and FYVE domain-con 59.6 5.8 0.0002 29.4 2.7 36 79-114 17-53 (82)
122 3shb_A E3 ubiquitin-protein li 58.8 1.1 3.8E-05 33.3 -1.4 47 82-128 27-77 (77)
123 2cu8_A Cysteine-rich protein 2 58.7 5.8 0.0002 28.1 2.5 40 81-131 9-48 (76)
124 1iml_A CRIP, cysteine rich int 58.4 4.3 0.00015 28.8 1.8 41 81-126 27-68 (76)
125 3m62_A Ubiquitin conjugation f 56.3 4.7 0.00016 43.0 2.3 49 79-131 889-938 (968)
126 2vnf_A ING 4, P29ING4, inhibit 56.0 1.7 5.8E-05 30.6 -0.8 44 80-127 9-58 (60)
127 2e6s_A E3 ubiquitin-protein li 54.6 2.2 7.7E-05 31.6 -0.4 47 81-127 26-76 (77)
128 3c6w_A P28ING5, inhibitor of g 54.3 2 6.7E-05 30.2 -0.7 44 80-127 8-57 (59)
129 2d8v_A Zinc finger FYVE domain 54.1 7.4 0.00025 28.3 2.3 32 79-114 6-38 (67)
130 2co8_A NEDD9 interacting prote 53.1 8.2 0.00028 28.0 2.6 41 80-131 14-54 (82)
131 2dj7_A Actin-binding LIM prote 52.5 8.5 0.00029 27.9 2.6 40 80-130 14-53 (80)
132 3ask_A E3 ubiquitin-protein li 52.4 3.8 0.00013 36.6 0.7 48 81-128 174-225 (226)
133 1z60_A TFIIH basal transcripti 50.4 4.7 0.00016 28.6 0.8 43 82-125 16-58 (59)
134 1zfo_A LAsp-1; LIM domain, zin 50.1 4.3 0.00015 24.7 0.5 28 82-111 4-31 (31)
135 1pi7_A VPU protein, U ORF prot 49.6 25 0.00085 22.5 4.0 26 19-44 9-34 (36)
136 1z2q_A LM5-1; membrane protein 49.4 14 0.00047 27.4 3.3 37 78-114 18-55 (84)
137 4gne_A Histone-lysine N-methyl 47.6 9.3 0.00032 30.0 2.2 47 79-130 13-64 (107)
138 2ysm_A Myeloid/lymphoid or mix 47.6 2.4 8.1E-05 33.0 -1.3 46 83-128 56-104 (111)
139 2k1k_A Ephrin type-A receptor 47.4 24 0.00083 22.6 3.8 25 14-38 11-35 (38)
140 3t7l_A Zinc finger FYVE domain 47.3 10 0.00035 28.5 2.4 52 80-131 19-76 (90)
141 3asl_A E3 ubiquitin-protein li 46.4 2.9 0.0001 30.3 -0.8 44 83-127 20-68 (70)
142 1wyh_A SLIM 2, skeletal muscle 46.2 17 0.00059 25.1 3.3 41 81-131 5-45 (72)
143 1x4u_A Zinc finger, FYVE domai 44.7 14 0.00049 27.2 2.8 35 79-113 12-47 (84)
144 1g47_A Pinch protein; LIM doma 43.5 21 0.00073 24.9 3.5 42 80-131 10-51 (77)
145 1x61_A Thyroid receptor intera 43.2 25 0.00087 24.2 3.8 40 81-130 5-44 (72)
146 2g6q_A Inhibitor of growth pro 42.9 3.8 0.00013 29.0 -0.7 44 80-127 10-59 (62)
147 1x63_A Skeletal muscle LIM-pro 41.6 25 0.00085 24.9 3.6 41 81-131 15-55 (82)
148 1x64_A Alpha-actinin-2 associa 40.6 29 0.001 25.2 4.0 40 80-131 24-63 (89)
149 1joc_A EEA1, early endosomal a 40.3 13 0.00045 29.7 2.1 35 80-114 68-103 (125)
150 2cor_A Pinch protein; LIM doma 40.0 16 0.00054 26.2 2.3 40 80-131 14-53 (79)
151 1vfy_A Phosphatidylinositol-3- 40.0 18 0.00061 26.0 2.6 32 82-113 12-44 (73)
152 2kwj_A Zinc finger protein DPF 39.4 2.1 7.3E-05 33.7 -2.8 48 83-130 60-110 (114)
153 3i2d_A E3 SUMO-protein ligase 39.3 21 0.00072 34.0 3.6 46 81-129 249-298 (371)
154 3a1b_A DNA (cytosine-5)-methyl 39.3 12 0.00042 31.6 1.8 45 78-126 76-132 (159)
155 1zbd_B Rabphilin-3A; G protein 38.9 11 0.00038 30.7 1.5 33 80-112 54-88 (134)
156 3o7a_A PHD finger protein 13 v 38.8 4 0.00014 27.6 -1.0 42 86-127 8-51 (52)
157 2d8x_A Protein pinch; LIM doma 38.8 22 0.00074 24.5 2.9 40 81-132 5-44 (70)
158 2dar_A PDZ and LIM domain prot 38.5 29 0.001 25.2 3.7 40 80-131 24-63 (90)
159 3kqi_A GRC5, PHD finger protei 38.4 7.9 0.00027 28.1 0.4 47 82-129 11-62 (75)
160 1x4k_A Skeletal muscle LIM-pro 37.6 29 0.001 23.8 3.4 41 81-131 5-45 (72)
161 3kv5_D JMJC domain-containing 37.5 6 0.0002 39.0 -0.5 47 81-128 37-88 (488)
162 1wfk_A Zinc finger, FYVE domai 37.5 20 0.00069 26.9 2.6 53 80-132 8-67 (88)
163 1a7i_A QCRP2 (LIM1); LIM domai 37.4 13 0.00045 26.5 1.5 40 81-131 7-46 (81)
164 2d8y_A Eplin protein; LIM doma 36.7 26 0.00089 25.6 3.1 40 81-131 15-54 (91)
165 3f6q_B LIM and senescent cell 35.9 15 0.00052 25.1 1.6 43 80-132 10-52 (72)
166 1dvp_A HRS, hepatocyte growth 35.9 16 0.00056 31.6 2.2 35 80-114 160-195 (220)
167 2zet_C Melanophilin; complex, 35.8 13 0.00046 30.9 1.5 32 80-111 67-100 (153)
168 4fo9_A E3 SUMO-protein ligase 35.7 26 0.00089 33.2 3.6 46 82-130 216-265 (360)
169 2pv0_B DNA (cytosine-5)-methyl 35.6 17 0.00059 34.8 2.4 47 78-127 90-147 (386)
170 3zyq_A Hepatocyte growth facto 34.9 18 0.0006 31.7 2.2 36 80-115 163-199 (226)
171 1y02_A CARP2, FYVE-ring finger 34.7 17 0.00058 29.1 1.9 48 80-128 18-66 (120)
172 2jmi_A Protein YNG1, ING1 homo 34.5 7.1 0.00024 29.9 -0.4 44 80-127 25-75 (90)
173 1x4l_A Skeletal muscle LIM-pro 34.1 30 0.001 23.9 3.0 40 81-130 5-46 (72)
174 2k1a_A Integrin alpha-IIB; sin 33.3 38 0.0013 22.3 3.1 17 12-28 9-25 (42)
175 1v6g_A Actin binding LIM prote 32.5 30 0.001 24.5 2.8 39 81-131 15-53 (81)
176 2gmg_A Hypothetical protein PF 32.4 9.3 0.00032 30.2 -0.1 24 101-130 72-95 (105)
177 2rdd_B UPF0092 membrane protei 32.2 38 0.0013 21.3 2.9 8 34-41 17-24 (37)
178 2d8z_A Four and A half LIM dom 32.1 50 0.0017 22.5 3.9 38 81-130 5-42 (70)
179 1x68_A FHL5 protein; four-and- 31.5 37 0.0013 23.8 3.1 40 81-130 5-46 (76)
180 2cur_A Skeletal muscle LIM-pro 30.8 41 0.0014 22.9 3.2 38 81-130 5-42 (69)
181 2l3k_A Rhombotin-2, linker, LI 30.1 25 0.00085 27.4 2.1 36 81-117 36-71 (123)
182 2l4z_A DNA endonuclease RBBP8, 29.8 25 0.00086 27.6 2.1 39 81-130 61-99 (123)
183 1x6a_A LIMK-2, LIM domain kina 29.6 23 0.00079 25.1 1.7 39 81-131 15-53 (81)
184 3mpx_A FYVE, rhogef and PH dom 28.9 12 0.0004 35.2 0.0 36 80-115 374-410 (434)
185 2o35_A Hypothetical protein DU 28.8 21 0.00071 28.0 1.4 12 106-117 43-54 (105)
186 3fyb_A Protein of unknown func 28.3 21 0.00073 27.9 1.4 12 106-117 42-53 (104)
187 1x62_A C-terminal LIM domain p 28.1 36 0.0012 24.1 2.6 39 80-130 14-52 (79)
188 2jwa_A Receptor tyrosine-prote 28.0 89 0.003 20.7 4.2 29 17-45 12-40 (44)
189 1iij_A ERBB-2 receptor protein 26.1 24 0.00082 22.4 1.1 6 34-39 28-33 (35)
190 2cup_A Skeletal muscle LIM-pro 26.0 57 0.002 23.9 3.5 46 81-131 33-78 (101)
191 1nyp_A Pinch protein; LIM doma 25.7 52 0.0018 22.1 3.0 39 81-131 5-43 (66)
192 2egq_A FHL1 protein; LIM domai 25.5 48 0.0016 23.0 2.8 40 81-131 15-58 (77)
193 2lx0_A Membrane fusion protein 25.5 91 0.0031 18.8 3.5 18 23-40 11-28 (32)
194 2klu_A T-cell surface glycopro 25.0 52 0.0018 23.9 2.8 28 16-43 12-39 (70)
195 1wd2_A Ariadne-1 protein homol 25.0 22 0.00074 24.9 0.8 23 114-136 1-23 (60)
196 2rgt_A Fusion of LIM/homeobox 24.3 44 0.0015 27.3 2.7 39 82-130 66-104 (169)
197 1b8t_A Protein (CRP1); LIM dom 23.1 38 0.0013 28.3 2.2 27 82-110 116-142 (192)
198 2jmo_A Parkin; IBR, E3 ligase, 22.6 3.3 0.00011 30.7 -4.2 14 101-114 55-68 (80)
199 3mjh_B Early endosome antigen 21.6 26 0.0009 22.0 0.6 8 122-129 8-15 (34)
200 3kv4_A PHD finger protein 8; e 21.5 16 0.00055 35.6 -0.6 49 82-130 5-58 (447)
201 2jvx_A NF-kappa-B essential mo 21.4 27 0.00093 21.0 0.6 12 120-131 4-15 (28)
202 1x3h_A Leupaxin; paxillin fami 20.9 62 0.0021 22.6 2.6 39 81-131 15-53 (80)
203 2dlo_A Thyroid receptor-intera 20.3 66 0.0023 22.6 2.7 40 80-131 14-53 (81)
204 3pwf_A Rubrerythrin; non heme 20.1 40 0.0014 28.2 1.7 25 95-127 137-161 (170)
No 1
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.72 E-value=6.1e-18 Score=131.57 Aligned_cols=80 Identities=29% Similarity=0.563 Sum_probs=69.7
Q ss_pred ccccccCccHHHHHhCCcceeecccccCCCCCccceecccccCCCceEEeCCCCccchhhHHHHHhhCCCCCCccccccC
Q 022509 51 RGREFHGMSRRLVKAMPSLIFTAVVEDNCTSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDAR 130 (296)
Q Consensus 51 ~~~~~~~l~~~~i~~lp~~~~~~~~~~~~~~~~CaICLe~f~~~d~vr~LpCgH~FH~~CId~WL~~~~~tCPlCR~~i~ 130 (296)
......++.++.++.++...+........++..|+||+++|..++.++.|+|||.||..||+.|++. +.+||+||+.+.
T Consensus 10 ~~~~~~~~s~~~i~~lp~~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~-~~~CP~Cr~~~~ 88 (91)
T 2l0b_A 10 HMVANPPASKESIDALPEILVTEDHGAVGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQK-SGTCPVCRCMFP 88 (91)
T ss_dssp CSSCCCCCCHHHHHTSCEEECCTTCSSSSSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTT-TCBCTTTCCBSS
T ss_pred CCcCCCCCCHHHHHhCCCeeecccccccCCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHc-CCcCcCcCccCC
Confidence 4445678999999999998887766556677899999999999999999999999999999999997 567999999886
Q ss_pred C
Q 022509 131 T 131 (296)
Q Consensus 131 ~ 131 (296)
.
T Consensus 89 ~ 89 (91)
T 2l0b_A 89 P 89 (91)
T ss_dssp C
T ss_pred C
Confidence 5
No 2
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=6.3e-17 Score=120.85 Aligned_cols=68 Identities=37% Similarity=0.890 Sum_probs=56.0
Q ss_pred HhCCcceeecccccCCCCCccceecccccCCCceEEeCCCCccchhhHHHHHhhCCCCCCccccccCCCC
Q 022509 64 KAMPSLIFTAVVEDNCTSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDARTST 133 (296)
Q Consensus 64 ~~lp~~~~~~~~~~~~~~~~CaICLe~f~~~d~vr~LpCgH~FH~~CId~WL~~~~~tCPlCR~~i~~~~ 133 (296)
+.++...+.... ...++.+|+||+++|..++.++.++|+|+||..||++|++. +.+||+||+.+....
T Consensus 7 ~~lp~~~~~~~~-~~~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~-~~~CP~Cr~~~~~~~ 74 (75)
T 1x4j_A 7 GQLPSYRFNPNN-HQSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKA-NRTCPICRADSGPSS 74 (75)
T ss_dssp SSCCCEEBCSSS-CSSSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHH-CSSCTTTCCCCCCCC
T ss_pred hhCCcEEecCcc-ccCCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHc-CCcCcCcCCcCCCCC
Confidence 456766665432 33457899999999999999999999999999999999998 567999999987654
No 3
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.60 E-value=9.8e-16 Score=113.74 Aligned_cols=57 Identities=35% Similarity=0.800 Sum_probs=49.5
Q ss_pred CCCCCccceecccccCCCceEEeCCCCccchhhHHHHHhhCCCCCCccccccCCCCCC
Q 022509 78 NCTSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDARTSTGE 135 (296)
Q Consensus 78 ~~~~~~CaICLe~f~~~d~vr~LpCgH~FH~~CId~WL~~~~~tCPlCR~~i~~~~~~ 135 (296)
...+.+|+||+++|..++.+++|+|+|.||..||++|++. +.+||+||+.+......
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~ 68 (74)
T 2ep4_A 12 LNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEV-RKVCPLCNMPVLQLAQL 68 (74)
T ss_dssp CCCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHH-CSBCTTTCCBCSSCCSC
T ss_pred CCCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHc-CCcCCCcCccccccccc
Confidence 3456899999999999999999999999999999999998 45799999998764433
No 4
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.59 E-value=1e-15 Score=114.75 Aligned_cols=59 Identities=36% Similarity=0.876 Sum_probs=50.9
Q ss_pred CCCCCccceecccccCCCceEEeCCCCccchhhHHHHHhhCCCCCCccccccCCCCCCCC
Q 022509 78 NCTSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDARTSTGEPP 137 (296)
Q Consensus 78 ~~~~~~CaICLe~f~~~d~vr~LpCgH~FH~~CId~WL~~~~~tCPlCR~~i~~~~~~~~ 137 (296)
..++.+|+||+++|...+.+++|+|+|.||..||++|++. +.+||+||+.+......+.
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~ 70 (78)
T 2ect_A 12 VGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQ-HDSCPVCRKSLTGQNTATN 70 (78)
T ss_dssp SSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTT-TCSCTTTCCCCCCSCSCCC
T ss_pred CCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHc-CCcCcCcCCccCCcccCCC
Confidence 3456899999999999999999999999999999999997 5679999999987654443
No 5
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.58 E-value=1.5e-15 Score=111.20 Aligned_cols=56 Identities=41% Similarity=0.909 Sum_probs=49.1
Q ss_pred CCCCCccceecccccCCCceEEeCCCCccchhhHHHHHhhCCCCCCccccccCCCCC
Q 022509 78 NCTSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDARTSTG 134 (296)
Q Consensus 78 ~~~~~~CaICLe~f~~~d~vr~LpCgH~FH~~CId~WL~~~~~tCPlCR~~i~~~~~ 134 (296)
...+..|+||++.|..++.++.++|||.||..||++|++. +.+||+||+.+....+
T Consensus 11 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~ 66 (69)
T 2kiz_A 11 EDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLIT-NKKCPICRVDIEAQLP 66 (69)
T ss_dssp TTCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHH-CSBCTTTCSBSCSCCC
T ss_pred CCCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHc-CCCCcCcCccccCcCC
Confidence 3456899999999998888999999999999999999998 5569999999876543
No 6
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.56 E-value=1.6e-15 Score=106.28 Aligned_cols=50 Identities=46% Similarity=1.023 Sum_probs=45.4
Q ss_pred CCCccceecccccCCCceEEeC-CCCccchhhHHHHHhhCCCCCCccccccC
Q 022509 80 TSRTCAICLEDYSVGEKLRILP-CRHKFHAFCVDSWLTSWRTFCPVCKRDAR 130 (296)
Q Consensus 80 ~~~~CaICLe~f~~~d~vr~Lp-CgH~FH~~CId~WL~~~~~tCPlCR~~i~ 130 (296)
++.+|+||+++|..++.+..++ |||.||.+||++|++. +.+||+||+.+.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~-~~~CP~Cr~~~~ 54 (55)
T 1iym_A 4 DGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGS-HSTCPLCRLTVV 54 (55)
T ss_dssp CSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTT-CCSCSSSCCCSC
T ss_pred CCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHc-CCcCcCCCCEeE
Confidence 4578999999999999999998 9999999999999998 667999998874
No 7
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.55 E-value=5.8e-15 Score=118.22 Aligned_cols=65 Identities=28% Similarity=0.563 Sum_probs=52.3
Q ss_pred CCCccceecccccCCC---------------ceEEeCCCCccchhhHHHHHhh----CCCCCCccccccCCCCCCCCCCC
Q 022509 80 TSRTCAICLEDYSVGE---------------KLRILPCRHKFHAFCVDSWLTS----WRTFCPVCKRDARTSTGEPPASE 140 (296)
Q Consensus 80 ~~~~CaICLe~f~~~d---------------~vr~LpCgH~FH~~CId~WL~~----~~~tCPlCR~~i~~~~~~~~~~~ 140 (296)
.+.+|+|||++|...+ .++.++|+|+||..||+.|++. .+.+||+||+.+....+++|++.
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~~g~qp~g~ 103 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEKTGTQPWGK 103 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSCSSSCTTSS
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCCCCCCCCCe
Confidence 3569999999997643 4557899999999999999952 25579999999999888887766
Q ss_pred CCCC
Q 022509 141 STPL 144 (296)
Q Consensus 141 ~tp~ 144 (296)
.+-.
T Consensus 104 m~~~ 107 (114)
T 1v87_A 104 MEVF 107 (114)
T ss_dssp CCCS
T ss_pred EEEE
Confidence 5543
No 8
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.49 E-value=2.2e-14 Score=100.26 Aligned_cols=50 Identities=34% Similarity=0.741 Sum_probs=43.2
Q ss_pred CCCccceecccccCC-CceEEeCCCCccchhhHHHHHhhCCCCCCccccccC
Q 022509 80 TSRTCAICLEDYSVG-EKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDAR 130 (296)
Q Consensus 80 ~~~~CaICLe~f~~~-d~vr~LpCgH~FH~~CId~WL~~~~~tCPlCR~~i~ 130 (296)
++.+|+||+++|..+ +.++.++|||.||..||++|++. +.+||+||+.+.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKE-GYRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHH-TCCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHc-CCcCCCCCCcCC
Confidence 468899999999664 45788899999999999999998 467999998874
No 9
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.48 E-value=1.6e-14 Score=110.00 Aligned_cols=51 Identities=29% Similarity=0.735 Sum_probs=41.2
Q ss_pred CCCccceecccccC-----------CCceEEeC-CCCccchhhHHHHHhhCCCCCCccccccCC
Q 022509 80 TSRTCAICLEDYSV-----------GEKLRILP-CRHKFHAFCVDSWLTSWRTFCPVCKRDART 131 (296)
Q Consensus 80 ~~~~CaICLe~f~~-----------~d~vr~Lp-CgH~FH~~CId~WL~~~~~tCPlCR~~i~~ 131 (296)
+++.|+||+++|.+ ++.+++++ |||.||.+||++||+. +.+||+||+++..
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~~~~ 76 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQ-NNRCPLCQQDWVV 76 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTT-CCBCTTTCCBCCE
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHh-CCCCCCcCCCcch
Confidence 45678888888754 45566776 9999999999999998 5679999998764
No 10
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.47 E-value=4.5e-14 Score=108.17 Aligned_cols=60 Identities=27% Similarity=0.553 Sum_probs=48.7
Q ss_pred CCCCCccceecccccCCCceEEeCCC-----CccchhhHHHHHhhCC-CCCCccccccCCCCCCCCC
Q 022509 78 NCTSRTCAICLEDYSVGEKLRILPCR-----HKFHAFCVDSWLTSWR-TFCPVCKRDARTSTGEPPA 138 (296)
Q Consensus 78 ~~~~~~CaICLe~f~~~d~vr~LpCg-----H~FH~~CId~WL~~~~-~tCPlCR~~i~~~~~~~~~ 138 (296)
..++..|.||+++|++++.+ ++||+ |.||.+||++||+..+ .+||+||..+.......|+
T Consensus 12 ~~~~~~C~IC~~~~~~~~~l-~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~~~~~P~ 77 (80)
T 2d8s_A 12 PSSQDICRICHCEGDDESPL-ITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIMETKLSGP 77 (80)
T ss_dssp CTTSCCCSSSCCCCCSSSCE-ECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCCCCSCCC
T ss_pred CCCCCCCeEcCccccCCCee-EeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecCcccCCC
Confidence 34568999999999887776 68996 9999999999999733 5799999999876554443
No 11
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.45 E-value=5e-14 Score=102.31 Aligned_cols=53 Identities=25% Similarity=0.621 Sum_probs=44.7
Q ss_pred CCCCCccceecccccCC----CceEEeCCCCccchhhHHHHHhhCCCCCCccccccCC
Q 022509 78 NCTSRTCAICLEDYSVG----EKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDART 131 (296)
Q Consensus 78 ~~~~~~CaICLe~f~~~----d~vr~LpCgH~FH~~CId~WL~~~~~tCPlCR~~i~~ 131 (296)
..+..+|+||++.|.+. +.+..++|||.||..||+.|++. +.+||+||+.+..
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 12 PSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINH 68 (69)
T ss_dssp TTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHH-CSSCTTTCCCCCC
T ss_pred CCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHc-CCCCCCCCCccCc
Confidence 34568999999999764 44578899999999999999998 5679999998764
No 12
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.43 E-value=5.6e-14 Score=102.92 Aligned_cols=53 Identities=25% Similarity=0.625 Sum_probs=45.2
Q ss_pred CCCccceecccccCC----CceEEeCCCCccchhhHHHHHhhCCCCCCccccccCCCC
Q 022509 80 TSRTCAICLEDYSVG----EKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDARTST 133 (296)
Q Consensus 80 ~~~~CaICLe~f~~~----d~vr~LpCgH~FH~~CId~WL~~~~~tCPlCR~~i~~~~ 133 (296)
++.+|+||++.|.+. +.+..++|||.||..||++|++. +.+||+||+.+....
T Consensus 9 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~ 65 (71)
T 3ng2_A 9 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHKR 65 (71)
T ss_dssp TCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHH-CSBCTTTCCBCCCCS
T ss_pred CCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHc-CCCCCCCCCccChhh
Confidence 468999999999763 56688899999999999999998 567999999987543
No 13
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.40 E-value=9.9e-14 Score=99.30 Aligned_cols=52 Identities=25% Similarity=0.631 Sum_probs=44.5
Q ss_pred CCCccceecccccCC----CceEEeCCCCccchhhHHHHHhhCCCCCCccccccCCC
Q 022509 80 TSRTCAICLEDYSVG----EKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDARTS 132 (296)
Q Consensus 80 ~~~~CaICLe~f~~~----d~vr~LpCgH~FH~~CId~WL~~~~~tCPlCR~~i~~~ 132 (296)
++.+|+||++.+.+. +.+..++|||.||..||++|++. +.+||+||+.+...
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~ 57 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHK 57 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHH-CSBCTTTCCBCTTT
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHc-CCCCCCCCccCCcc
Confidence 357899999999763 45678899999999999999998 66799999988754
No 14
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.38 E-value=2.4e-13 Score=109.28 Aligned_cols=51 Identities=29% Similarity=0.639 Sum_probs=43.1
Q ss_pred CCCCccceecccccCC---------------CceEEeCCCCccchhhHHHHHhhCCCCCCccccccC
Q 022509 79 CTSRTCAICLEDYSVG---------------EKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDAR 130 (296)
Q Consensus 79 ~~~~~CaICLe~f~~~---------------d~vr~LpCgH~FH~~CId~WL~~~~~tCPlCR~~i~ 130 (296)
.+++.|+||+++|... ..++.++|+|.||..||+.||+. +.+||+||+.+.
T Consensus 35 ~~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~-~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 35 IVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT-RQVCPLDNREWE 100 (106)
T ss_dssp SCSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTT-CSBCSSSCSBCC
T ss_pred CCCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHc-CCcCcCCCCcce
Confidence 3568999999999854 13677899999999999999998 667999999854
No 15
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.38 E-value=1.8e-13 Score=100.41 Aligned_cols=52 Identities=29% Similarity=0.779 Sum_probs=44.3
Q ss_pred CCCCCccceecccccCCCceEEeCCCCccchhhHHHHHhhCCCCCCccccccCCCCC
Q 022509 78 NCTSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDARTSTG 134 (296)
Q Consensus 78 ~~~~~~CaICLe~f~~~d~vr~LpCgH~FH~~CId~WL~~~~~tCPlCR~~i~~~~~ 134 (296)
..+...|+||++.+.. ..++|||.||..||++|++. +.+||+||+.+.....
T Consensus 12 ~~~~~~C~IC~~~~~~----~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~ 63 (70)
T 2ecn_A 12 LTDEEECCICMDGRAD----LILPCAHSFCQKCIDKWSDR-HRNCPICRLQMTGANE 63 (70)
T ss_dssp CCCCCCCSSSCCSCCS----EEETTTEEECHHHHHHSSCC-CSSCHHHHHCTTCCCC
T ss_pred CCCCCCCeeCCcCccC----cccCCCCcccHHHHHHHHHC-cCcCCCcCCcccCCCc
Confidence 3456899999999875 77899999999999999996 6679999999886543
No 16
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.35 E-value=6.7e-13 Score=100.85 Aligned_cols=54 Identities=26% Similarity=0.629 Sum_probs=46.0
Q ss_pred CCCCccceecccccCCCc-eEEeCCCCccchhhHHHHHhhC--CCCCCccccccCCC
Q 022509 79 CTSRTCAICLEDYSVGEK-LRILPCRHKFHAFCVDSWLTSW--RTFCPVCKRDARTS 132 (296)
Q Consensus 79 ~~~~~CaICLe~f~~~d~-vr~LpCgH~FH~~CId~WL~~~--~~tCPlCR~~i~~~ 132 (296)
.+..+|+||++.|...+. .+.++|||.||..||+.|++.. ...||+||+.+...
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 69 (88)
T 2ct2_A 13 REVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRIT 69 (88)
T ss_dssp CSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCS
T ss_pred cCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccch
Confidence 456899999999998765 6788999999999999999974 36799999987654
No 17
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.35 E-value=8.4e-13 Score=97.65 Aligned_cols=54 Identities=20% Similarity=0.365 Sum_probs=44.0
Q ss_pred CCCCccceecccccCCCceEEeCCCCccchhhHHHHHhhCCCCCCccccccCCCCCC
Q 022509 79 CTSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDARTSTGE 135 (296)
Q Consensus 79 ~~~~~CaICLe~f~~~d~vr~LpCgH~FH~~CId~WL~~~~~tCPlCR~~i~~~~~~ 135 (296)
.+...|+||++.|.+. +..++|||.||..||+.|++. +..||+||+.+......
T Consensus 13 ~~~~~C~IC~~~~~~p--~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~ 66 (72)
T 2djb_A 13 TPYILCSICKGYLIDA--TTITECLHTFCKSCIVRHFYY-SNRCPKCNIVVHQTQPL 66 (72)
T ss_dssp CGGGSCTTTSSCCSSC--EECSSSCCEECHHHHHHHHHH-CSSCTTTCCCCCSSCSC
T ss_pred CCCCCCCCCChHHHCc--CEECCCCCHHHHHHHHHHHHc-CCcCCCcCcccCccccc
Confidence 3468999999998753 444489999999999999998 56799999998765443
No 18
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.35 E-value=6.5e-13 Score=96.68 Aligned_cols=50 Identities=36% Similarity=0.831 Sum_probs=42.6
Q ss_pred CCCccceecccccCCCceEEeCCCCccchhhHHHHHhhCCCCCCccccccCCC
Q 022509 80 TSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDARTS 132 (296)
Q Consensus 80 ~~~~CaICLe~f~~~d~vr~LpCgH~FH~~CId~WL~~~~~tCPlCR~~i~~~ 132 (296)
.+.+|+||++.+.+ .+..++|||.||..|++.|++. +.+||+||+.+...
T Consensus 4 ~~~~C~IC~~~~~~--~~~~~~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~ 53 (68)
T 1chc_A 4 VAERCPICLEDPSN--YSMALPCLHAFCYVCITRWIRQ-NPTCPLCKVPVESV 53 (68)
T ss_dssp CCCCCSSCCSCCCS--CEEETTTTEEESTTHHHHHHHH-SCSTTTTCCCCCCE
T ss_pred CCCCCeeCCccccC--CcEecCCCCeeHHHHHHHHHhC-cCcCcCCChhhHhh
Confidence 35789999999864 3578899999999999999998 56799999988643
No 19
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.34 E-value=2e-13 Score=100.76 Aligned_cols=51 Identities=29% Similarity=0.587 Sum_probs=43.0
Q ss_pred CCCCccceecccccCCCceEEeCCCCccchhhHHHHHhhCCCCCCccccccCCCC
Q 022509 79 CTSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDARTST 133 (296)
Q Consensus 79 ~~~~~CaICLe~f~~~d~vr~LpCgH~FH~~CId~WL~~~~~tCPlCR~~i~~~~ 133 (296)
.++.+|+||++.+.+. ..++|||.||..||+.|++. +.+||+||+.+....
T Consensus 13 ~~~~~C~IC~~~~~~~---~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~~ 63 (71)
T 2d8t_A 13 LTVPECAICLQTCVHP---VSLPCKHVFCYLCVKGASWL-GKRCALCRQEIPEDF 63 (71)
T ss_dssp SSCCBCSSSSSBCSSE---EEETTTEEEEHHHHHHCTTC-SSBCSSSCCBCCHHH
T ss_pred CCCCCCccCCcccCCC---EEccCCCHHHHHHHHHHHHC-CCcCcCcCchhCHhh
Confidence 3568999999998644 67899999999999999997 567999999987543
No 20
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.30 E-value=1.1e-12 Score=95.40 Aligned_cols=51 Identities=20% Similarity=0.425 Sum_probs=42.6
Q ss_pred CCCCccceecccccCCCceEEeCCCCccchhhHHHHHhhCCCCCCccccccCCC
Q 022509 79 CTSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDARTS 132 (296)
Q Consensus 79 ~~~~~CaICLe~f~~~d~vr~LpCgH~FH~~CId~WL~~~~~tCPlCR~~i~~~ 132 (296)
.+...|+||++.+.+. ..++|||.||..||++|++..+..||+||+.+...
T Consensus 13 ~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 63 (66)
T 2ecy_A 13 EDKYKCEKCHLVLCSP---KQTECGHRFCESCMAALLSSSSPKCTACQESIVKD 63 (66)
T ss_dssp CCCEECTTTCCEESSC---CCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTT
T ss_pred CcCCCCCCCChHhcCe---eECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCChh
Confidence 3568999999999765 33799999999999999965466799999988754
No 21
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.29 E-value=1.5e-12 Score=95.83 Aligned_cols=52 Identities=25% Similarity=0.485 Sum_probs=42.7
Q ss_pred CCCCCccceecccccCCCceEEeCCCCccchhhHHHHHhh--CCCCCCccccccCCC
Q 022509 78 NCTSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTS--WRTFCPVCKRDARTS 132 (296)
Q Consensus 78 ~~~~~~CaICLe~f~~~d~vr~LpCgH~FH~~CId~WL~~--~~~tCPlCR~~i~~~ 132 (296)
..+...|+||++.|.+ ...++|||.||..||+.|++. .+..||+||+.+...
T Consensus 17 ~~~~~~C~IC~~~~~~---~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 70 (73)
T 2ysl_A 17 LQEEVICPICLDILQK---PVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKN 70 (73)
T ss_dssp CCCCCBCTTTCSBCSS---EEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCC
T ss_pred CccCCEeccCCcccCC---eEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCcc
Confidence 3456899999999874 356799999999999999973 355799999988754
No 22
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.27 E-value=2.3e-12 Score=97.23 Aligned_cols=49 Identities=20% Similarity=0.493 Sum_probs=41.8
Q ss_pred CCCCCccceecccccCCCceEEeCCCCccchhhHHHHHhhCCCCCCccccccC
Q 022509 78 NCTSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDAR 130 (296)
Q Consensus 78 ~~~~~~CaICLe~f~~~d~vr~LpCgH~FH~~CId~WL~~~~~tCPlCR~~i~ 130 (296)
......|+||++.|... .+++|||.||..||..|++. ...||+||+.+.
T Consensus 12 ~~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~ 60 (81)
T 2csy_A 12 EEIPFRCFICRQAFQNP---VVTKCRHYFCESCALEHFRA-TPRCYICDQPTG 60 (81)
T ss_dssp CCCCSBCSSSCSBCCSE---EECTTSCEEEHHHHHHHHHH-CSBCSSSCCBCC
T ss_pred CCCCCCCcCCCchhcCe---eEccCCCHhHHHHHHHHHHC-CCcCCCcCcccc
Confidence 34568999999998653 56899999999999999997 567999999985
No 23
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.27 E-value=4.1e-12 Score=94.64 Aligned_cols=51 Identities=20% Similarity=0.533 Sum_probs=41.7
Q ss_pred CCCCccceecccccCCCceEEeC-CCCccchhhHHHHHhhCC-CCCCccccccCCC
Q 022509 79 CTSRTCAICLEDYSVGEKLRILP-CRHKFHAFCVDSWLTSWR-TFCPVCKRDARTS 132 (296)
Q Consensus 79 ~~~~~CaICLe~f~~~d~vr~Lp-CgH~FH~~CId~WL~~~~-~tCPlCR~~i~~~ 132 (296)
.++..|+||++.|.+. .+++ |||.||..||+.|++... ..||+||+.+...
T Consensus 13 ~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~ 65 (74)
T 2yur_A 13 PDELLCLICKDIMTDA---VVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSP 65 (74)
T ss_dssp CGGGSCSSSCCCCTTC---EECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCT
T ss_pred CCCCCCcCCChHHhCC---eEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCc
Confidence 3468999999999854 5689 999999999999998632 5799999975543
No 24
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=99.26 E-value=5.7e-13 Score=109.10 Aligned_cols=53 Identities=30% Similarity=0.656 Sum_probs=2.0
Q ss_pred CCCCCccceecccccCC-------------C--ceEEeCCCCccchhhHHHHHhhCCCCCCccccccCC
Q 022509 78 NCTSRTCAICLEDYSVG-------------E--KLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDART 131 (296)
Q Consensus 78 ~~~~~~CaICLe~f~~~-------------d--~vr~LpCgH~FH~~CId~WL~~~~~tCPlCR~~i~~ 131 (296)
+..++.|+||+++|... + .+..++|+|.||..||++||+. +.+||+||+++..
T Consensus 45 d~~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~-~~~CP~Cr~~~~~ 112 (117)
T 4a0k_B 45 DIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT-RQVCPLDNREWEF 112 (117)
T ss_dssp CCCC-----------------------------------------------------------------
T ss_pred cCCCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHc-CCcCCCCCCeeee
Confidence 34568999999999752 2 2333579999999999999998 6679999998643
No 25
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.26 E-value=3.2e-12 Score=92.57 Aligned_cols=53 Identities=25% Similarity=0.465 Sum_probs=43.3
Q ss_pred CCccceecc-cccCCCce-EEeCCCCccchhhHHHHHhhCCCCCCccccccCCCC
Q 022509 81 SRTCAICLE-DYSVGEKL-RILPCRHKFHAFCVDSWLTSWRTFCPVCKRDARTST 133 (296)
Q Consensus 81 ~~~CaICLe-~f~~~d~v-r~LpCgH~FH~~CId~WL~~~~~tCPlCR~~i~~~~ 133 (296)
+..|+||++ .|...... ..++|||.||..||++|+...+..||+||+.+....
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 57 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSN 57 (65)
T ss_dssp TTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCC
T ss_pred CCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCcccccc
Confidence 578999999 77666433 457899999999999998765677999999987543
No 26
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.24 E-value=4.6e-12 Score=95.82 Aligned_cols=56 Identities=21% Similarity=0.457 Sum_probs=45.0
Q ss_pred CCCccceecccccCCCceEEeCCCCccchhhHHHHHhhC-CCCCCccccccCCCCCCCC
Q 022509 80 TSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSW-RTFCPVCKRDARTSTGEPP 137 (296)
Q Consensus 80 ~~~~CaICLe~f~~~d~vr~LpCgH~FH~~CId~WL~~~-~~tCPlCR~~i~~~~~~~~ 137 (296)
...+|+||++.+..+++.. .|+|.||..||++||+.. +.+||+||+++....++.+
T Consensus 14 ~i~~C~IC~~~i~~g~~C~--~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~~~~~~~ 70 (74)
T 2ct0_A 14 AVKICNICHSLLIQGQSCE--TCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHEIPKSG 70 (74)
T ss_dssp SSCBCSSSCCBCSSSEECS--SSCCEECHHHHHHHSTTCSSCCCTTTCSCCCSCCCCCC
T ss_pred CCCcCcchhhHcccCCccC--CCCchhhHHHHHHHHHhcCCCCCCCCcCcCCCCCCCCC
Confidence 4589999999999775443 799999999999999873 2679999998876554433
No 27
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.22 E-value=6.6e-12 Score=93.78 Aligned_cols=51 Identities=18% Similarity=0.311 Sum_probs=43.1
Q ss_pred CCCCccceecccccCCCceEEeCCCCccchhhHHHHHhhCCCCCCccccccCCC
Q 022509 79 CTSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDARTS 132 (296)
Q Consensus 79 ~~~~~CaICLe~f~~~d~vr~LpCgH~FH~~CId~WL~~~~~tCPlCR~~i~~~ 132 (296)
.+...|+||++.|.+. .+++|||.||..||.+|++.++.+||+||+.+...
T Consensus 6 ~~~~~C~IC~~~~~~P---v~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~ 56 (78)
T 1t1h_A 6 PEYFRCPISLELMKDP---VIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHA 56 (78)
T ss_dssp SSSSSCTTTSCCCSSE---EEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSC
T ss_pred cccCCCCCccccccCC---EEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCChh
Confidence 3468999999998754 56799999999999999987567799999988653
No 28
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.21 E-value=1e-11 Score=89.17 Aligned_cols=45 Identities=24% Similarity=0.496 Sum_probs=37.8
Q ss_pred CCCCCccceecccccCCCceEEeCCCCccchhhHHHHHhh--CCCCCCcc
Q 022509 78 NCTSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTS--WRTFCPVC 125 (296)
Q Consensus 78 ~~~~~~CaICLe~f~~~d~vr~LpCgH~FH~~CId~WL~~--~~~tCPlC 125 (296)
..++..|+||++.|.+. .+++|||.||..||++|++. .+..||+|
T Consensus 17 ~~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 17 LQEEVICPICLDILQKP---VTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCBCTTTCSBCSSC---EECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred CccCCCCCcCCchhCCe---EEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 34568999999998854 56799999999999999984 35579998
No 29
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.21 E-value=1.2e-11 Score=92.83 Aligned_cols=52 Identities=29% Similarity=0.466 Sum_probs=43.3
Q ss_pred CCCCCccceecccccCCCceEEeCCCCccchhhHHHHHhhC-----CCCCCccccccCCC
Q 022509 78 NCTSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSW-----RTFCPVCKRDARTS 132 (296)
Q Consensus 78 ~~~~~~CaICLe~f~~~d~vr~LpCgH~FH~~CId~WL~~~-----~~tCPlCR~~i~~~ 132 (296)
..++..|+||++.|... ..++|||.||..||..|++.. ...||+||..+...
T Consensus 16 ~~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~ 72 (85)
T 2ecw_A 16 IKEEVTCPICLELLKEP---VSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFG 72 (85)
T ss_dssp CCTTTSCTTTCSCCSSC---EECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTT
T ss_pred CccCCCCcCCChhhCcc---eeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHH
Confidence 34568999999998765 478999999999999999873 55699999988753
No 30
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.21 E-value=4.9e-12 Score=102.30 Aligned_cols=53 Identities=25% Similarity=0.625 Sum_probs=45.0
Q ss_pred CCCccceecccccCC----CceEEeCCCCccchhhHHHHHhhCCCCCCccccccCCCC
Q 022509 80 TSRTCAICLEDYSVG----EKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDARTST 133 (296)
Q Consensus 80 ~~~~CaICLe~f~~~----d~vr~LpCgH~FH~~CId~WL~~~~~tCPlCR~~i~~~~ 133 (296)
++.+|+||++.|.+. +.+..++|||.||..||++|++. +.+||+||+.+....
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~ 62 (133)
T 4ap4_A 6 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHKR 62 (133)
T ss_dssp CSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTT-CSBCTTTCCBCTTTC
T ss_pred CCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHh-CCCCCCCCCcCcccc
Confidence 458999999999764 55688999999999999999998 557999999886543
No 31
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.18 E-value=1.6e-11 Score=92.18 Aligned_cols=51 Identities=29% Similarity=0.539 Sum_probs=42.5
Q ss_pred CCCCCccceecccccCCCceEEeCCCCccchhhHHHHHhh-----CCCCCCccccccCC
Q 022509 78 NCTSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTS-----WRTFCPVCKRDART 131 (296)
Q Consensus 78 ~~~~~~CaICLe~f~~~d~vr~LpCgH~FH~~CId~WL~~-----~~~tCPlCR~~i~~ 131 (296)
..+..+|+||++.|.+. ..++|||.||..||+.|++. ....||+||..+..
T Consensus 16 ~~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecv_A 16 VKEEVTCPICLELLTQP---LSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQP 71 (85)
T ss_dssp CCCCCCCTTTCSCCSSC---BCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCS
T ss_pred ccCCCCCCCCCcccCCc---eeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCH
Confidence 34568999999998764 45799999999999999986 24569999998875
No 32
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.17 E-value=1.2e-11 Score=86.99 Aligned_cols=45 Identities=31% Similarity=0.765 Sum_probs=37.3
Q ss_pred CCCCCccceecccccCCCceEEeCCCCccchhhHHHHHhh--CCCCCCcc
Q 022509 78 NCTSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTS--WRTFCPVC 125 (296)
Q Consensus 78 ~~~~~~CaICLe~f~~~d~vr~LpCgH~FH~~CId~WL~~--~~~tCPlC 125 (296)
..+...|+||++.+.+. ..++|||.||..||++|++. .+..||+|
T Consensus 12 ~~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 12 LQVEASCSVCLEYLKEP---VIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp SCCCCBCSSSCCBCSSC---CCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred cccCCCCccCCcccCcc---EeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 34568999999999865 45799999999999999654 46679998
No 33
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.17 E-value=8.3e-12 Score=103.65 Aligned_cols=47 Identities=30% Similarity=0.946 Sum_probs=40.6
Q ss_pred CCccceecccccCCCceEEeCCCCccchhhHHHHHhhCCCCCCccccccCC
Q 022509 81 SRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDART 131 (296)
Q Consensus 81 ~~~CaICLe~f~~~d~vr~LpCgH~FH~~CId~WL~~~~~tCPlCR~~i~~ 131 (296)
+..|+||++.|... ..++|||.||..||..|+.. +.+||+||..+..
T Consensus 53 ~~~C~iC~~~~~~~---~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 99 (138)
T 4ayc_A 53 ELQCIICSEYFIEA---VTLNCAHSFCSYCINEWMKR-KIECPICRKDIKS 99 (138)
T ss_dssp HSBCTTTCSBCSSE---EEETTSCEEEHHHHHHHTTT-CSBCTTTCCBCCC
T ss_pred cCCCcccCcccCCc---eECCCCCCccHHHHHHHHHc-CCcCCCCCCcCCC
Confidence 46899999998643 67899999999999999997 5669999998854
No 34
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.16 E-value=3.9e-12 Score=94.83 Aligned_cols=50 Identities=28% Similarity=0.485 Sum_probs=42.1
Q ss_pred CCCCccceecccccCCCceEEeCCCCccchhhHHHHHhhC------CCCCCccccccCC
Q 022509 79 CTSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSW------RTFCPVCKRDART 131 (296)
Q Consensus 79 ~~~~~CaICLe~f~~~d~vr~LpCgH~FH~~CId~WL~~~------~~tCPlCR~~i~~ 131 (296)
.+...|+||++.|.+. ..++|||.||..||..|++.. ...||+||..+..
T Consensus 10 ~~~~~C~IC~~~~~~p---~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~ 65 (79)
T 2egp_A 10 QEEVTCPICLELLTEP---LSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSF 65 (79)
T ss_dssp CCCCEETTTTEECSSC---CCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCS
T ss_pred ccCCCCcCCCcccCCe---eECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCH
Confidence 4568999999999764 457999999999999999862 4579999998875
No 35
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.16 E-value=1.1e-11 Score=97.54 Aligned_cols=49 Identities=27% Similarity=0.554 Sum_probs=41.3
Q ss_pred CCccceecccccCCCceEEeCCCCccchhhHHHHHhhCCCCCCccccccCC
Q 022509 81 SRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDART 131 (296)
Q Consensus 81 ~~~CaICLe~f~~~d~vr~LpCgH~FH~~CId~WL~~~~~tCPlCR~~i~~ 131 (296)
...|+||++.|.. .+..++|||.||..||..|++..+..||+||..+..
T Consensus 22 ~~~C~IC~~~~~~--p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (100)
T 3lrq_A 22 VFRCFICMEKLRD--ARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQL 70 (100)
T ss_dssp HTBCTTTCSBCSS--EEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CCCCccCCccccC--ccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCH
Confidence 4789999999974 344489999999999999999854679999998854
No 36
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.13 E-value=2.9e-11 Score=92.98 Aligned_cols=50 Identities=20% Similarity=0.517 Sum_probs=41.7
Q ss_pred CCCCCccceecccccCCCceEEeC-CCCccchhhHHHHHhhC-CCCCCccccccC
Q 022509 78 NCTSRTCAICLEDYSVGEKLRILP-CRHKFHAFCVDSWLTSW-RTFCPVCKRDAR 130 (296)
Q Consensus 78 ~~~~~~CaICLe~f~~~d~vr~Lp-CgH~FH~~CId~WL~~~-~~tCPlCR~~i~ 130 (296)
..++..|+||++.|.+. ..++ |||.||..||..|+... +..||+||..+.
T Consensus 10 ~~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 10 IPDELLCLICKDIMTDA---VVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 61 (92)
T ss_dssp CCTTTEETTTTEECSSC---EECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred CCcCCCCCCCChhhcCc---eECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence 34568999999999854 6789 99999999999999753 357999999874
No 37
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.13 E-value=1.9e-11 Score=98.84 Aligned_cols=52 Identities=25% Similarity=0.639 Sum_probs=44.1
Q ss_pred CCCccceecccccCC----CceEEeCCCCccchhhHHHHHhhCCCCCCccccccCCC
Q 022509 80 TSRTCAICLEDYSVG----EKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDARTS 132 (296)
Q Consensus 80 ~~~~CaICLe~f~~~----d~vr~LpCgH~FH~~CId~WL~~~~~tCPlCR~~i~~~ 132 (296)
+...|+||++.|++. .....++|||.||..||++|++. +.+||+||+.+...
T Consensus 71 ~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~ 126 (133)
T 4ap4_A 71 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHK 126 (133)
T ss_dssp SSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHH-CSBCTTTCCBCCGG
T ss_pred CCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHc-CCCCCCCCCcCChh
Confidence 468899999999763 44578899999999999999998 55799999988754
No 38
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.13 E-value=3.2e-11 Score=98.01 Aligned_cols=48 Identities=23% Similarity=0.411 Sum_probs=41.6
Q ss_pred CCccceecccccCCCceEEeCCCCccchhhHHHHHhhCCCCCCccccccCC
Q 022509 81 SRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDART 131 (296)
Q Consensus 81 ~~~CaICLe~f~~~d~vr~LpCgH~FH~~CId~WL~~~~~tCPlCR~~i~~ 131 (296)
...|+||++.|... ..++|||.||..||..|+..+...||+||..+..
T Consensus 52 ~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 52 TFQCICCQELVFRP---ITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp HTBCTTTSSBCSSE---EECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred CCCCCcCChHHcCc---EEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 47899999999854 5679999999999999998655579999999875
No 39
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.08 E-value=4.5e-11 Score=93.38 Aligned_cols=48 Identities=27% Similarity=0.778 Sum_probs=40.2
Q ss_pred CCccceecccccCCCceEEeCCCCccchhhHHHHHhhCCCCCCccccccCC
Q 022509 81 SRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDART 131 (296)
Q Consensus 81 ~~~CaICLe~f~~~d~vr~LpCgH~FH~~CId~WL~~~~~tCPlCR~~i~~ 131 (296)
...|+||++.|.+. +..++|||.||..||..|++. +..||+||..+..
T Consensus 22 ~~~C~IC~~~~~~p--~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 22 LLRCGICFEYFNIA--MIIPQCSHNYCSLCIRKFLSY-KTQCPTCCVTVTE 69 (99)
T ss_dssp HTBCTTTCSBCSSE--EECTTTCCEEEHHHHHHHHTT-CCBCTTTCCBCCG
T ss_pred CCCcccCChhhCCc--CEECCCCCHhhHHHHHHHHHC-CCCCCCCCCcCCh
Confidence 47899999998753 333489999999999999997 5679999998865
No 40
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.08 E-value=5.1e-11 Score=101.36 Aligned_cols=49 Identities=29% Similarity=0.609 Sum_probs=41.5
Q ss_pred CCccceecccccCCCceEEeCCCCccchhhHHHHHhhCCCCCCccccccCC
Q 022509 81 SRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDART 131 (296)
Q Consensus 81 ~~~CaICLe~f~~~d~vr~LpCgH~FH~~CId~WL~~~~~tCPlCR~~i~~ 131 (296)
...|+||++.|.+ .+..++|||.||..||+.|++..+..||+||..+..
T Consensus 54 ~~~C~IC~~~~~~--p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 54 ELMCPICLDMLKN--TMTTKECLHRFCADCIITALRSGNKECPTCRKKLVS 102 (165)
T ss_dssp HHBCTTTSSBCSS--EEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCS
T ss_pred CCCCcccChHhhC--cCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCC
Confidence 4689999999875 345559999999999999999756779999998854
No 41
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=99.07 E-value=1.2e-10 Score=88.40 Aligned_cols=55 Identities=20% Similarity=0.584 Sum_probs=43.5
Q ss_pred CCCCccceecccccCCCceEEeC--CCCccchhhHHHHHhhCCCCCCccccccCCCCC
Q 022509 79 CTSRTCAICLEDYSVGEKLRILP--CRHKFHAFCVDSWLTSWRTFCPVCKRDARTSTG 134 (296)
Q Consensus 79 ~~~~~CaICLe~f~~~d~vr~Lp--CgH~FH~~CId~WL~~~~~tCPlCR~~i~~~~~ 134 (296)
.++..|+||++.+...+. ..+| |||.||..|+..|++.....||+||+.+.....
T Consensus 9 ~~~~~CpICle~~~~~d~-~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~~ 65 (78)
T 1e4u_A 9 EDPVECPLCMEPLEIDDI-NFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDPA 65 (78)
T ss_dssp CCCCBCTTTCCBCCTTTT-TCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCSS
T ss_pred ccCCcCCccCccCccccc-cccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCCch
Confidence 456899999999875443 3444 999999999999986556779999999876543
No 42
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.06 E-value=5.4e-11 Score=94.43 Aligned_cols=50 Identities=22% Similarity=0.665 Sum_probs=41.6
Q ss_pred CCCccceecccccCCCceEEeCCCCccchhhHHHHHhhCCCCCCccccccCCC
Q 022509 80 TSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDARTS 132 (296)
Q Consensus 80 ~~~~CaICLe~f~~~d~vr~LpCgH~FH~~CId~WL~~~~~tCPlCR~~i~~~ 132 (296)
++..|+||++.|.+ .+..++|||.||..||..|++. +..||+||..+...
T Consensus 14 ~~~~C~IC~~~~~~--p~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~ 63 (108)
T 2ckl_A 14 PHLMCVLCGGYFID--ATTIIECLHSFCKTCIVRYLET-SKYCPICDVQVHKT 63 (108)
T ss_dssp GGTBCTTTSSBCSS--EEEETTTCCEEEHHHHHHHHTS-CSBCTTTCCBSCSS
T ss_pred CcCCCccCChHHhC--cCEeCCCCChhhHHHHHHHHHh-CCcCcCCCcccccc
Confidence 35889999999874 3444499999999999999997 56799999988753
No 43
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.05 E-value=1e-10 Score=99.01 Aligned_cols=49 Identities=22% Similarity=0.399 Sum_probs=42.3
Q ss_pred CCccceecccccCCCceEEeCCCCccchhhHHHHHhhCCCCCCccccccCCC
Q 022509 81 SRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDARTS 132 (296)
Q Consensus 81 ~~~CaICLe~f~~~d~vr~LpCgH~FH~~CId~WL~~~~~tCPlCR~~i~~~ 132 (296)
...|+||++.|.+. .+++|||.||..||..|++.....||+||..+...
T Consensus 78 ~~~C~IC~~~~~~p---v~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 78 SFMCVCCQELVYQP---VTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQN 126 (150)
T ss_dssp HTBCTTTSSBCSSE---EECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred CCEeecCChhhcCC---EEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence 47899999998754 55899999999999999997555799999998765
No 44
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.02 E-value=1.3e-10 Score=91.99 Aligned_cols=49 Identities=33% Similarity=0.648 Sum_probs=40.6
Q ss_pred CCccceecccccCCCceEEeCCCCccchhhHHHHHhhCC--CCCCccccccCCC
Q 022509 81 SRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWR--TFCPVCKRDARTS 132 (296)
Q Consensus 81 ~~~CaICLe~f~~~d~vr~LpCgH~FH~~CId~WL~~~~--~tCPlCR~~i~~~ 132 (296)
...|+||++.|... ..++|||.||..||..|+.... ..||+||..+...
T Consensus 21 ~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 71 (112)
T 1jm7_A 21 ILECPICLELIKEP---VSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKR 71 (112)
T ss_dssp HTSCSSSCCCCSSC---CBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTT
T ss_pred CCCCcccChhhcCe---EECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHh
Confidence 46899999998755 3479999999999999998632 4699999988753
No 45
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.02 E-value=9.6e-11 Score=94.62 Aligned_cols=50 Identities=24% Similarity=0.430 Sum_probs=42.3
Q ss_pred CCCCccceecccccCCCceEEeCCCCccchhhHHHHHhhCCCCCCccccccCC
Q 022509 79 CTSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDART 131 (296)
Q Consensus 79 ~~~~~CaICLe~f~~~d~vr~LpCgH~FH~~CId~WL~~~~~tCPlCR~~i~~ 131 (296)
.+...|+||++.+... ..++|||.||..||..|++.....||+||..+..
T Consensus 16 ~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (118)
T 3hct_A 16 ESKYECPICLMALREA---VQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLE 65 (118)
T ss_dssp CGGGBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCCcCChhhcCe---EECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCH
Confidence 3457999999998754 5679999999999999999755579999998865
No 46
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.01 E-value=4.7e-11 Score=95.72 Aligned_cols=48 Identities=29% Similarity=0.648 Sum_probs=41.5
Q ss_pred CCccceecccccCCCceEEeCCCCccchhhHHHHHhhCCCCCCccccccCC
Q 022509 81 SRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDART 131 (296)
Q Consensus 81 ~~~CaICLe~f~~~d~vr~LpCgH~FH~~CId~WL~~~~~tCPlCR~~i~~ 131 (296)
+..|+||++.|... ..++|||.||..||..|++..+..||+||..+..
T Consensus 15 ~~~C~iC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 15 ECQCGICMEILVEP---VTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSS 62 (115)
T ss_dssp HHBCTTTCSBCSSC---EECTTSCEECHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred CCCCccCCcccCce---eEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccCc
Confidence 47899999998754 6679999999999999998756779999998763
No 47
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=98.99 E-value=1.7e-10 Score=92.52 Aligned_cols=49 Identities=24% Similarity=0.564 Sum_probs=41.8
Q ss_pred CCccceecccccCCCceEEeCCCCccchhhHHHHHhhCCCCCCccccccCCC
Q 022509 81 SRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDARTS 132 (296)
Q Consensus 81 ~~~CaICLe~f~~~d~vr~LpCgH~FH~~CId~WL~~~~~tCPlCR~~i~~~ 132 (296)
+..|+||++.|.+. ..++|||.||..||+.|++..+..||+||..+...
T Consensus 23 ~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 71 (116)
T 1rmd_A 23 SISCQICEHILADP---VETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPT 71 (116)
T ss_dssp HTBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGG
T ss_pred CCCCCCCCcHhcCc---EEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHh
Confidence 47899999998654 45899999999999999997556799999988754
No 48
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.96 E-value=1.6e-10 Score=81.82 Aligned_cols=48 Identities=21% Similarity=0.557 Sum_probs=39.7
Q ss_pred CCCCccceecccccCCCceEEeCCCCccchhhHHHHHhhCCCCCCccccccCCCC
Q 022509 79 CTSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDARTST 133 (296)
Q Consensus 79 ~~~~~CaICLe~f~~~d~vr~LpCgH~FH~~CId~WL~~~~~tCPlCR~~i~~~~ 133 (296)
.+...|+||++.|... +.|+|||.||..||..| ...||+||+.+....
T Consensus 4 ~~~~~C~IC~~~~~~p---~~l~CgH~fC~~Ci~~~----~~~CP~Cr~~~~~~~ 51 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCP---KLLPCLHTLCSGCLEAS----GMQCPICQAPWPLGA 51 (56)
T ss_dssp CCCSSCSSSCSSCBCC---SCSTTSCCSBTTTCSSS----SSSCSSCCSSSSCCS
T ss_pred ccCCCceEeCCccCCe---EEcCCCCcccHHHHccC----CCCCCcCCcEeecCC
Confidence 4568899999999865 56899999999999885 455999999887543
No 49
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.95 E-value=1.7e-10 Score=96.67 Aligned_cols=51 Identities=22% Similarity=0.431 Sum_probs=42.8
Q ss_pred CCCCCccceecccccCCCceEEeCCCCccchhhHHHHHhhCCCCCCccccccCC
Q 022509 78 NCTSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDART 131 (296)
Q Consensus 78 ~~~~~~CaICLe~f~~~d~vr~LpCgH~FH~~CId~WL~~~~~tCPlCR~~i~~ 131 (296)
..+...|+||++.|.+. .+++|||.||..||..|++.....||+||.++..
T Consensus 28 l~~~~~C~IC~~~~~~p---v~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 78 (141)
T 3knv_A 28 LEAKYLCSACRNVLRRP---FQAQCGHRYCSFCLASILSSGPQNCAACVHEGIY 78 (141)
T ss_dssp CCGGGBCTTTCSBCSSE---EECTTSCEEEHHHHHHHGGGSCEECHHHHHTTCC
T ss_pred CCcCcCCCCCChhhcCc---EECCCCCccCHHHHHHHHhcCCCCCCCCCCcccc
Confidence 34568999999998765 5589999999999999999755579999998743
No 50
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.91 E-value=4.8e-10 Score=108.42 Aligned_cols=50 Identities=32% Similarity=0.715 Sum_probs=42.3
Q ss_pred CCCccceecccccCCCceEEeCCCCccchhhHHHHHhhCCCCCCccccccCCC
Q 022509 80 TSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDARTS 132 (296)
Q Consensus 80 ~~~~CaICLe~f~~~d~vr~LpCgH~FH~~CId~WL~~~~~tCPlCR~~i~~~ 132 (296)
...+|+||++.+.. ...++|||.||..|+..|+...+..||+||+.+...
T Consensus 331 ~~~~C~ICle~~~~---pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~ 380 (389)
T 2y1n_A 331 TFQLCKICAENDKD---VKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGT 380 (389)
T ss_dssp SSSBCTTTSSSBCC---EEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCEE
T ss_pred CCCCCCccCcCCCC---eEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCCc
Confidence 45799999999853 577999999999999999994466799999988754
No 51
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.90 E-value=4.5e-10 Score=81.78 Aligned_cols=47 Identities=23% Similarity=0.464 Sum_probs=38.4
Q ss_pred CCccceecccccCCCceEEe--CCCCc-cchhhHHHHHhhCCCCCCccccccCC
Q 022509 81 SRTCAICLEDYSVGEKLRIL--PCRHK-FHAFCVDSWLTSWRTFCPVCKRDART 131 (296)
Q Consensus 81 ~~~CaICLe~f~~~d~vr~L--pCgH~-FH~~CId~WL~~~~~tCPlCR~~i~~ 131 (296)
+.+|.||++.+.+. ..+ ||||. |+.+|++.|.+. +..||+||+.+..
T Consensus 8 ~~~C~IC~~~~~~~---~~~~~pCgH~~~C~~C~~~~~~~-~~~CPiCR~~i~~ 57 (64)
T 2vje_A 8 IEPCVICQGRPKNG---CIVHGKTGHLMACFTCAKKLKKR-NKPCPVCRQPIQM 57 (64)
T ss_dssp GSCCTTTSSSCSCE---EEEETTEEEEEECHHHHHHHHHT-TCCCTTTCCCCCE
T ss_pred cCCCCcCCCCCCCE---EEECCCCCChhhHHHHHHHHHHc-CCcCCCcCcchhc
Confidence 57899999986533 344 99999 899999999987 5569999998753
No 52
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=98.85 E-value=1.7e-09 Score=82.97 Aligned_cols=49 Identities=8% Similarity=-0.099 Sum_probs=42.6
Q ss_pred CCCCccceecccccCCCceEEeCCCCccchhhHHHHHhhCCCCCCccccccCC
Q 022509 79 CTSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDART 131 (296)
Q Consensus 79 ~~~~~CaICLe~f~~~d~vr~LpCgH~FH~~CId~WL~~~~~tCPlCR~~i~~ 131 (296)
.+...|+||++-|++. .+++|||.|++.||..|+.. +.+||+||..+..
T Consensus 12 p~~~~CpI~~~~m~dP---V~~~cGhtf~r~~I~~~l~~-~~~cP~~~~~l~~ 60 (85)
T 2kr4_A 12 PDEFRDPLMDTLMTDP---VRLPSGTVMDRSIILRHLLN-SPTDPFNRQMLTE 60 (85)
T ss_dssp CTTTBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHH-CSBCTTTCCBCCG
T ss_pred chheECcccCchhcCC---eECCCCCEECHHHHHHHHhc-CCCCCCCcCCCCh
Confidence 3568999999999866 67889999999999999997 5679999988754
No 53
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.84 E-value=9.2e-10 Score=79.90 Aligned_cols=50 Identities=18% Similarity=0.421 Sum_probs=38.6
Q ss_pred CCCccceecccccCCCceEEeCCCCc-cchhhHHHHHhhCCCCCCccccccCC
Q 022509 80 TSRTCAICLEDYSVGEKLRILPCRHK-FHAFCVDSWLTSWRTFCPVCKRDART 131 (296)
Q Consensus 80 ~~~~CaICLe~f~~~d~vr~LpCgH~-FH~~CId~WL~~~~~tCPlCR~~i~~ 131 (296)
....|.||++...+. .+..+||||. |+..|+..|.+. +..||+||+.+..
T Consensus 6 ~~~~C~IC~~~~~~~-~~~~~pCgH~~~C~~C~~~~~~~-~~~CPiCR~~i~~ 56 (63)
T 2vje_B 6 LLKPCSLCEKRPRDG-NIIHGRTGHLVTCFHCARRLKKA-GASCPICKKEIQL 56 (63)
T ss_dssp GGSBCTTTSSSBSCE-EEEETTEEEEEECHHHHHHHHHT-TCBCTTTCCBCCE
T ss_pred cCCCCcccCCcCCCe-EEEecCCCCHhHHHHHHHHHHHh-CCcCCCcCchhhc
Confidence 357899999986433 1222399998 999999999887 4569999998753
No 54
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=98.79 E-value=2.8e-09 Score=84.39 Aligned_cols=49 Identities=8% Similarity=-0.082 Sum_probs=42.7
Q ss_pred CCCCccceecccccCCCceEEeCCCCccchhhHHHHHhhCCCCCCccccccCC
Q 022509 79 CTSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDART 131 (296)
Q Consensus 79 ~~~~~CaICLe~f~~~d~vr~LpCgH~FH~~CId~WL~~~~~tCPlCR~~i~~ 131 (296)
.+...|+||++-|++. .+++|||.|++.||..|+.. +.+||+||..+..
T Consensus 27 p~~~~CpI~~~~m~dP---V~~~cGhtf~r~~I~~~l~~-~~~cP~~~~~l~~ 75 (100)
T 2kre_A 27 PDEFRDPLMDTLMTDP---VRLPSGTIMDRSIILRHLLN-SPTDPFNRQTLTE 75 (100)
T ss_dssp STTTBCTTTCSBCSSE---EEETTTEEEEHHHHHHHTTS-CSBCSSSCCBCCT
T ss_pred cHhhCCcCccCcccCC---eECCCCCEEchHHHHHHHHc-CCCCCCCCCCCCh
Confidence 3568999999999866 67889999999999999996 6679999998764
No 55
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=98.79 E-value=3.3e-09 Score=83.73 Aligned_cols=49 Identities=14% Similarity=0.074 Sum_probs=42.6
Q ss_pred CCCCccceecccccCCCceEEeCCC-CccchhhHHHHHhhCCCCCCccccccCC
Q 022509 79 CTSRTCAICLEDYSVGEKLRILPCR-HKFHAFCVDSWLTSWRTFCPVCKRDART 131 (296)
Q Consensus 79 ~~~~~CaICLe~f~~~d~vr~LpCg-H~FH~~CId~WL~~~~~tCPlCR~~i~~ 131 (296)
.+...|+||++-|++. .+++|| |.|++.||..|+.. +.+||+||+.+..
T Consensus 20 p~~~~CpI~~~~m~dP---V~~~cG~htf~r~cI~~~l~~-~~~cP~~~~~l~~ 69 (98)
T 1wgm_A 20 CDEFLDPIMSTLMCDP---VVLPSSRVTVDRSTIARHLLS-DQTDPFNRSPLTM 69 (98)
T ss_dssp CTTTBCTTTCSBCSSE---EECTTTCCEEEHHHHHHHTTT-SCBCTTTCSBCCT
T ss_pred cHhcCCcCccccccCC---eECCCCCeEECHHHHHHHHHh-CCCCCCCCCCCCh
Confidence 3568999999999866 668999 99999999999997 5679999998864
No 56
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.77 E-value=1.4e-09 Score=87.57 Aligned_cols=44 Identities=32% Similarity=0.560 Sum_probs=38.0
Q ss_pred CCccceecccccCCCceEEe-CCCCccchhhHHHHHhhCCCCCCccccccC
Q 022509 81 SRTCAICLEDYSVGEKLRIL-PCRHKFHAFCVDSWLTSWRTFCPVCKRDAR 130 (296)
Q Consensus 81 ~~~CaICLe~f~~~d~vr~L-pCgH~FH~~CId~WL~~~~~tCPlCR~~i~ 130 (296)
...|+||++.|... ..+ +|||.||..||..|+. ..||+||..+.
T Consensus 22 ~~~C~IC~~~~~~p---v~~~~CgH~fC~~Ci~~~~~---~~CP~Cr~~~~ 66 (117)
T 1jm7_B 22 LLRCSRCTNILREP---VCLGGCEHIFCSNCVSDCIG---TGCPVCYTPAW 66 (117)
T ss_dssp TTSCSSSCSCCSSC---BCCCSSSCCBCTTTGGGGTT---TBCSSSCCBCS
T ss_pred CCCCCCCChHhhCc---cEeCCCCCHHHHHHHHHHhc---CCCcCCCCcCc
Confidence 58899999999754 455 8999999999999987 45999999874
No 57
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.77 E-value=2.7e-09 Score=96.11 Aligned_cols=50 Identities=16% Similarity=0.111 Sum_probs=42.8
Q ss_pred CCCCccceecccccCCCceEEeCCCCccchhhHHHHHhhCCCCCCccccccCC
Q 022509 79 CTSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDART 131 (296)
Q Consensus 79 ~~~~~CaICLe~f~~~d~vr~LpCgH~FH~~CId~WL~~~~~tCPlCR~~i~~ 131 (296)
.....|+||++-|.+. .+++|||.|+..||..|+..+..+||+||.++..
T Consensus 206 ~~~~~c~i~~~~~~dP---v~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~ 255 (281)
T 2c2l_A 206 PDYLCGKISFELMREP---CITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQ 255 (281)
T ss_dssp CSTTBCTTTCSBCSSE---EECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCG
T ss_pred CcccCCcCcCCHhcCC---eECCCCCEECHHHHHHHHHHCCCCCcCCCCCCch
Confidence 3568999999999866 6789999999999999999755569999988854
No 58
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.75 E-value=4.5e-09 Score=76.00 Aligned_cols=50 Identities=30% Similarity=0.624 Sum_probs=38.8
Q ss_pred CCCCccceecccccCCCceEEeCCC--C---ccchhhHHHHHhh-CCCCCCccccccCC
Q 022509 79 CTSRTCAICLEDYSVGEKLRILPCR--H---KFHAFCVDSWLTS-WRTFCPVCKRDART 131 (296)
Q Consensus 79 ~~~~~CaICLe~f~~~d~vr~LpCg--H---~FH~~CId~WL~~-~~~tCPlCR~~i~~ 131 (296)
.+...|.||+++. ++.+ ++||. | .||..|+++|+.. ++.+||+||..+..
T Consensus 4 ~~~~~CrIC~~~~--~~~l-~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~~ 59 (60)
T 1vyx_A 4 EDVPVCWICNEEL--GNER-FRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYNT 59 (60)
T ss_dssp CSCCEETTTTEEC--SCCC-CCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCCC
T ss_pred CCCCEeEEeecCC--CCce-ecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeeec
Confidence 3568999999983 3344 68954 4 8999999999984 45779999988753
No 59
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=98.74 E-value=1.3e-09 Score=103.69 Aligned_cols=55 Identities=29% Similarity=0.634 Sum_probs=42.3
Q ss_pred CCCCCccceecccccCCCce-----EEeCCCCccchhhHHHHHhhCC----------CCCCccccccCCC
Q 022509 78 NCTSRTCAICLEDYSVGEKL-----RILPCRHKFHAFCVDSWLTSWR----------TFCPVCKRDARTS 132 (296)
Q Consensus 78 ~~~~~~CaICLe~f~~~d~v-----r~LpCgH~FH~~CId~WL~~~~----------~tCPlCR~~i~~~ 132 (296)
+.+..+|+||++.+.++.++ ....|||.||..||.+||+... .+||.||+++...
T Consensus 305 ee~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~s 374 (381)
T 3k1l_B 305 DNEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLSTS 374 (381)
T ss_dssp CCSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEGG
T ss_pred ccCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCcc
Confidence 44678999999999874333 2346999999999999998521 3599999987643
No 60
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.72 E-value=3.5e-09 Score=90.30 Aligned_cols=50 Identities=24% Similarity=0.430 Sum_probs=42.4
Q ss_pred CCCCccceecccccCCCceEEeCCCCccchhhHHHHHhhCCCCCCccccccCC
Q 022509 79 CTSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDART 131 (296)
Q Consensus 79 ~~~~~CaICLe~f~~~d~vr~LpCgH~FH~~CId~WL~~~~~tCPlCR~~i~~ 131 (296)
.+...|+||++.|.+. .+++|||.||..||..|++..+.+||+||..+..
T Consensus 16 ~~~~~C~IC~~~~~~p---v~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (170)
T 3hcs_A 16 ESKYECPICLMALREA---VQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLE 65 (170)
T ss_dssp CGGGBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCCCCChhhcCc---EECCCCCHHHHHHHHHHHHhCCCCCCCCccCcch
Confidence 3468999999998755 5589999999999999998755579999988765
No 61
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.71 E-value=3.1e-09 Score=79.22 Aligned_cols=43 Identities=23% Similarity=0.641 Sum_probs=36.4
Q ss_pred CCccceecccccCCCceEEeCCCCc-cchhhHHHHHhhCCCCCCccccccCC
Q 022509 81 SRTCAICLEDYSVGEKLRILPCRHK-FHAFCVDSWLTSWRTFCPVCKRDART 131 (296)
Q Consensus 81 ~~~CaICLe~f~~~d~vr~LpCgH~-FH~~CId~WL~~~~~tCPlCR~~i~~ 131 (296)
+..|.||++.+.+ ...+||||. ||..|+..| ..||+||+.+..
T Consensus 24 ~~~C~iC~~~~~~---~~~~pCgH~~~C~~C~~~~-----~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 24 EKLCKICMDRNIA---IVFVPCGHLVTCKQCAEAV-----DKCPMCYTVITF 67 (74)
T ss_dssp HTBCTTTSSSBCC---EEEETTCCBCCCHHHHTTC-----SBCTTTCCBCSE
T ss_pred CCCCCCCCCCCCC---EEEcCCCChhHHHHhhhcC-----ccCCCcCcCccC
Confidence 4789999998754 467899999 999999998 349999998764
No 62
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.61 E-value=1.4e-08 Score=78.71 Aligned_cols=49 Identities=27% Similarity=0.691 Sum_probs=39.8
Q ss_pred CCCccceecccccCCCceEEeCCCCccchhhHHHHHhh----C---CCCCCc--cccc
Q 022509 80 TSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTS----W---RTFCPV--CKRD 128 (296)
Q Consensus 80 ~~~~CaICLe~f~~~d~vr~LpCgH~FH~~CId~WL~~----~---~~tCPl--CR~~ 128 (296)
+..+|.||++++...+.+..++|||.||.+|+..+++. + ...||. ||..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 35789999999987765555679999999999999874 1 246999 9987
No 63
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.61 E-value=1.9e-08 Score=78.28 Aligned_cols=46 Identities=22% Similarity=0.495 Sum_probs=38.1
Q ss_pred CCCccceecccccCCCceEEeC-CCCccchhhHHHHHhhC-----CCCCCc--cccc
Q 022509 80 TSRTCAICLEDYSVGEKLRILP-CRHKFHAFCVDSWLTSW-----RTFCPV--CKRD 128 (296)
Q Consensus 80 ~~~~CaICLe~f~~~d~vr~Lp-CgH~FH~~CId~WL~~~-----~~tCPl--CR~~ 128 (296)
....|+||++.|++. .+++ |||.|++.||..|+..+ ..+||+ |+..
T Consensus 6 ~~~~CPI~~~~~~dP---V~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 6 SGFTCPITKEEMKKP---VKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHT 59 (94)
T ss_dssp SCCBCTTTCSBCSSE---EEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred cEeECcCcCchhcCC---EEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence 458899999999854 5575 99999999999999863 347999 9865
No 64
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.60 E-value=3.2e-08 Score=72.93 Aligned_cols=46 Identities=30% Similarity=0.713 Sum_probs=37.5
Q ss_pred CCCCccceecccccCCCceEEeCCCCc-cchhhHHHHHhhCCCCCCccccccCCC
Q 022509 79 CTSRTCAICLEDYSVGEKLRILPCRHK-FHAFCVDSWLTSWRTFCPVCKRDARTS 132 (296)
Q Consensus 79 ~~~~~CaICLe~f~~~d~vr~LpCgH~-FH~~CId~WL~~~~~tCPlCR~~i~~~ 132 (296)
.+...|.||++... .+..+||||. |+..|+.. ...||+||+.+...
T Consensus 13 ~~~~~C~IC~~~~~---~~v~~pCgH~~~C~~C~~~-----~~~CP~CR~~i~~~ 59 (68)
T 2ea5_A 13 ENSKDCVVCQNGTV---NWVLLPCRHTCLCDGCVKY-----FQQCPMCRQFVQES 59 (68)
T ss_dssp CCSSCCSSSSSSCC---CCEETTTTBCCSCTTHHHH-----CSSCTTTCCCCCCE
T ss_pred CCCCCCCCcCcCCC---CEEEECCCChhhhHHHHhc-----CCCCCCCCcchhce
Confidence 35689999999864 3578899999 99999984 24599999988764
No 65
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.52 E-value=2.4e-08 Score=74.39 Aligned_cols=44 Identities=23% Similarity=0.628 Sum_probs=35.4
Q ss_pred CCccceecccccCCCceEEeCCCCc-cchhhHHHHHhhCCCCCCccccccCCC
Q 022509 81 SRTCAICLEDYSVGEKLRILPCRHK-FHAFCVDSWLTSWRTFCPVCKRDARTS 132 (296)
Q Consensus 81 ~~~CaICLe~f~~~d~vr~LpCgH~-FH~~CId~WL~~~~~tCPlCR~~i~~~ 132 (296)
+.+|.||++.+.+ ...+||||. ||..|++.+ ..||+||+.+...
T Consensus 25 ~~~C~IC~~~~~~---~~~~pCgH~~~C~~C~~~~-----~~CP~Cr~~i~~~ 69 (75)
T 2ecg_A 25 EKLCKICMDRNIA---IVFVPCGHLVTCKQCAEAV-----DKCPMCYTVITFK 69 (75)
T ss_dssp HHSCSSSCSSCCC---BCCSSSCCCCBCHHHHHHC-----SBCTTTCCBCCCC
T ss_pred CCCCCcCCCCCCC---EEEecCCCHHHHHHHhhCC-----CCCccCCceecCc
Confidence 4689999999754 356899999 999999642 4599999988653
No 66
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.50 E-value=3.3e-08 Score=86.29 Aligned_cols=50 Identities=16% Similarity=0.102 Sum_probs=42.2
Q ss_pred CCCCccceecccccCCCceEEeCCCCccchhhHHHHHhhCCCCCCccccccCC
Q 022509 79 CTSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDART 131 (296)
Q Consensus 79 ~~~~~CaICLe~f~~~d~vr~LpCgH~FH~~CId~WL~~~~~tCPlCR~~i~~ 131 (296)
.....|+||++-|.+. .+++|||.|+..||..|+..+..+||+||..+..
T Consensus 104 p~~f~CPI~~elm~DP---V~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~ 153 (179)
T 2f42_A 104 PDYLCGKISFELMREP---CITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQ 153 (179)
T ss_dssp CGGGBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred cHhhcccCccccCCCC---eECCCCCEECHHHHHHHHHhCCCCCCCCcCCCCh
Confidence 3568999999999865 6679999999999999998744469999988754
No 67
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.39 E-value=6.2e-08 Score=73.31 Aligned_cols=44 Identities=25% Similarity=0.606 Sum_probs=36.7
Q ss_pred CCccceecccccCCCceEEeCCCCc-cchhhHHHHHhhCCCCCCccccccCCC
Q 022509 81 SRTCAICLEDYSVGEKLRILPCRHK-FHAFCVDSWLTSWRTFCPVCKRDARTS 132 (296)
Q Consensus 81 ~~~CaICLe~f~~~d~vr~LpCgH~-FH~~CId~WL~~~~~tCPlCR~~i~~~ 132 (296)
+..|.||++.+.+ ...+||||. |+..|+..|. .||+||..+...
T Consensus 18 ~~~C~IC~~~~~~---~v~~pCgH~~~C~~C~~~~~-----~CP~Cr~~i~~~ 62 (79)
T 2yho_A 18 AMLCMVCCEEEIN---STFCPCGHTVCCESCAAQLQ-----SCPVCRSRVEHV 62 (79)
T ss_dssp HTBCTTTSSSBCC---EEEETTCBCCBCHHHHTTCS-----BCTTTCCBCCEE
T ss_pred CCEeEEeCcccCc---EEEECCCCHHHHHHHHHhcC-----cCCCCCchhhCe
Confidence 4689999998653 577899999 9999999872 599999988764
No 68
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.26 E-value=2.8e-07 Score=84.84 Aligned_cols=50 Identities=24% Similarity=0.499 Sum_probs=40.9
Q ss_pred CCCccceecccccCCCceEEeCCCCccchhhHHHHHhhC-CCCCCc--cccccCC
Q 022509 80 TSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSW-RTFCPV--CKRDART 131 (296)
Q Consensus 80 ~~~~CaICLe~f~~~d~vr~LpCgH~FH~~CId~WL~~~-~~tCPl--CR~~i~~ 131 (296)
....|+||++.|++ .|+.+.|||.|++.||..|++.+ ...||+ ||+.+..
T Consensus 180 ~el~CPIcl~~f~D--PVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~ 232 (267)
T 3htk_C 180 IELTCPITCKPYEA--PLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSM 232 (267)
T ss_dssp CCSBCTTTSSBCSS--EEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECG
T ss_pred eeeECcCccCcccC--CeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCch
Confidence 45799999999964 46666899999999999999863 346999 9987653
No 69
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.22 E-value=2.4e-07 Score=88.37 Aligned_cols=44 Identities=27% Similarity=0.727 Sum_probs=37.2
Q ss_pred CCCccceecccccCCCceEEeCCCCc-cchhhHHHHHhhCCCCCCccccccCC
Q 022509 80 TSRTCAICLEDYSVGEKLRILPCRHK-FHAFCVDSWLTSWRTFCPVCKRDART 131 (296)
Q Consensus 80 ~~~~CaICLe~f~~~d~vr~LpCgH~-FH~~CId~WL~~~~~tCPlCR~~i~~ 131 (296)
++..|+||++.+.. ...+||||. ||..|+..| ..||+||..+..
T Consensus 294 ~~~~C~IC~~~~~~---~v~lpCgH~~fC~~C~~~~-----~~CP~CR~~i~~ 338 (345)
T 3t6p_A 294 EERTCKVCMDKEVS---VVFIPCGHLVVCQECAPSL-----RKCPICRGIIKG 338 (345)
T ss_dssp TTCBCTTTSSSBCC---EEEETTCCEEECTTTGGGC-----SBCTTTCCBCCE
T ss_pred CCCCCCccCCcCCc---eEEcCCCChhHhHHHHhcC-----CcCCCCCCCccC
Confidence 46899999999863 467899999 999999988 349999998764
No 70
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.22 E-value=4e-07 Score=65.79 Aligned_cols=48 Identities=13% Similarity=0.124 Sum_probs=39.9
Q ss_pred CCccceecccccCCCceEEe-CCCCccchhhHHHHHhhCCCCCCccccccCCC
Q 022509 81 SRTCAICLEDYSVGEKLRIL-PCRHKFHAFCVDSWLTSWRTFCPVCKRDARTS 132 (296)
Q Consensus 81 ~~~CaICLe~f~~~d~vr~L-pCgH~FH~~CId~WL~~~~~tCPlCR~~i~~~ 132 (296)
...|+||++.|++. .++ +|||+|.+.||++|++. +.+||++++++...
T Consensus 3 ~~~CpIs~~~m~dP---V~~~~sG~~yer~~I~~~l~~-~~~cP~t~~~L~~~ 51 (61)
T 2bay_A 3 HMLCAISGKVPRRP---VLSPKSRTIFEKSLLEQYVKD-TGNDPITNEPLSIE 51 (61)
T ss_dssp -CCCTTTCSCCSSE---EEETTTTEEEEHHHHHHHHHH-HSBCTTTCCBCCGG
T ss_pred eEEecCCCCCCCCC---EEeCCCCcEEcHHHHHHHHHh-CCCCcCCcCCCChh
Confidence 36799999999854 556 89999999999999997 45599999888654
No 71
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=98.13 E-value=1.3e-06 Score=69.29 Aligned_cols=49 Identities=22% Similarity=0.424 Sum_probs=39.8
Q ss_pred ccceecccccCCCceEEeCCCCccchhhHHHHHhhCCCCCCccccccCCCC
Q 022509 83 TCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDARTST 133 (296)
Q Consensus 83 ~CaICLe~f~~~d~vr~LpCgH~FH~~CId~WL~~~~~tCPlCR~~i~~~~ 133 (296)
-|.+|--++. ...|.+||+|+|+.+|+..|.++...+||+||..+...+
T Consensus 3 fC~~C~~Pi~--iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~rVe 51 (101)
T 3vk6_A 3 FCDKCGLPIK--VYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQRIE 51 (101)
T ss_dssp BCTTTCSBCS--EEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSEEE
T ss_pred ecCccCCCeE--EEeeeccccccHHHHHHHHHHhccCCCCcCcCCeeeeeE
Confidence 4777766654 457999999999999999999876778999999887643
No 72
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=97.88 E-value=5.4e-06 Score=75.15 Aligned_cols=55 Identities=22% Similarity=0.462 Sum_probs=43.3
Q ss_pred CCCccceecccccCCCceEEeCCCCccchhhHHHHHhhC-CCCCCccccccCCCCCCC
Q 022509 80 TSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSW-RTFCPVCKRDARTSTGEP 136 (296)
Q Consensus 80 ~~~~CaICLe~f~~~d~vr~LpCgH~FH~~CId~WL~~~-~~tCPlCR~~i~~~~~~~ 136 (296)
....|.||.+-...+.++. .|+|.||..|++.|++.. +..||.|+.......+..
T Consensus 179 ~i~~C~iC~~iv~~g~~C~--~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~~~~~ 234 (238)
T 3nw0_A 179 AVKICNICHSLLIQGQSCE--TCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHEIPKV 234 (238)
T ss_dssp TCCBCTTTCSBCSSCEECS--SSCCEECHHHHHHHTTTCSSCBCTTTCCBCCSCCCCC
T ss_pred CCCcCcchhhHHhCCcccC--ccChHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCCC
Confidence 3689999999998774332 399999999999999863 347999999877665443
No 73
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=94.64 E-value=0.014 Score=44.94 Aligned_cols=34 Identities=15% Similarity=0.368 Sum_probs=27.5
Q ss_pred CCccceecccccCCCceEEeCCCCccchhhHHHH
Q 022509 81 SRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSW 114 (296)
Q Consensus 81 ~~~CaICLe~f~~~d~vr~LpCgH~FH~~CId~W 114 (296)
+..|.||++++.......-+.|+|.|+..|++.|
T Consensus 3 e~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~ 36 (101)
T 2jun_A 3 KVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKAT 36 (101)
T ss_dssp CCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHH
T ss_pred CCCCcCCCCCCCCCceEECCcCChHHhHHHCHHH
Confidence 4789999987654444556899999999999984
No 74
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=94.57 E-value=0.021 Score=41.63 Aligned_cols=47 Identities=28% Similarity=0.467 Sum_probs=33.2
Q ss_pred CCCccceecccccCCCceEEeCCCCccchhhHHHHHhhC---CCCCCcccccc
Q 022509 80 TSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSW---RTFCPVCKRDA 129 (296)
Q Consensus 80 ~~~~CaICLe~f~~~d~vr~LpCgH~FH~~CId~WL~~~---~~tCPlCR~~i 129 (296)
.+..|.||.+. ++.+.--.|...||..|++..|..- .=.||.|+...
T Consensus 11 ~~~~C~vC~~~---~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~ 60 (66)
T 2lri_C 11 PGARCGVCGDG---TDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDV 60 (66)
T ss_dssp TTCCCTTTSCC---TTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCC
T ss_pred CCCCcCCCCCC---CeEEECCCCCCceecccCCCccCcCCCCCEECccccCCC
Confidence 45789999753 4433333489999999999887752 23599997543
No 75
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=94.22 E-value=0.039 Score=43.14 Aligned_cols=51 Identities=22% Similarity=0.500 Sum_probs=39.4
Q ss_pred CCCccceecccccCCCceEEeCC-CCccchhhHHHHHhhCCCCCCccccccCCCCCCC
Q 022509 80 TSRTCAICLEDYSVGEKLRILPC-RHKFHAFCVDSWLTSWRTFCPVCKRDARTSTGEP 136 (296)
Q Consensus 80 ~~~~CaICLe~f~~~d~vr~LpC-gH~FH~~CId~WL~~~~~tCPlCR~~i~~~~~~~ 136 (296)
+-..|-.|+-+.+ . .+.| .|.+|..|+...|.+ ...||+|+.++......+
T Consensus 27 G~~nCKsCWf~~k--~---LV~C~dHYLCl~CLtlmL~~-SdrCpIC~~pLPtkl~~~ 78 (99)
T 2ko5_A 27 GPQFCKSCWFENK--G---LVECNNHYLCLNCLTLLLSV-SNRCPICKMPLPTKLRPS 78 (99)
T ss_dssp CCCCCCSSCSCCS--S---EEECSSCEEEHHHHHHTCSS-SSEETTTTEECCCCSCTT
T ss_pred CcccChhhccccC--C---eeeecchhhHHHHHHHHHhh-ccCCcccCCcCCcceecC
Confidence 5688999998754 1 2346 799999999999887 556999999988765443
No 76
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=90.86 E-value=0.074 Score=37.84 Aligned_cols=49 Identities=29% Similarity=0.502 Sum_probs=34.0
Q ss_pred CCCccceecccccCCCceEEe-CCCCccchhhHHHHHh----hCCCCCCccccc
Q 022509 80 TSRTCAICLEDYSVGEKLRIL-PCRHKFHAFCVDSWLT----SWRTFCPVCKRD 128 (296)
Q Consensus 80 ~~~~CaICLe~f~~~d~vr~L-pCgH~FH~~CId~WL~----~~~~tCPlCR~~ 128 (296)
++..|.||...+.+++.+..- .|..-||..|+..-.. ...-.||.|+..
T Consensus 5 e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k 58 (64)
T 1we9_A 5 SSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNK 58 (64)
T ss_dssp SCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred CCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCc
Confidence 467899999988655444333 4899999999865322 134569999764
No 77
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=89.50 E-value=0.07 Score=39.18 Aligned_cols=52 Identities=21% Similarity=0.432 Sum_probs=34.4
Q ss_pred CCCCccceecccccCCCceEEe-CCCCccchhhHHHHHhh---CCCCCCccccccCC
Q 022509 79 CTSRTCAICLEDYSVGEKLRIL-PCRHKFHAFCVDSWLTS---WRTFCPVCKRDART 131 (296)
Q Consensus 79 ~~~~~CaICLe~f~~~d~vr~L-pCgH~FH~~CId~WL~~---~~~tCPlCR~~i~~ 131 (296)
.+...|.||..... ++.+..- .|.-.||..|+..-+.. ..-.||.|+..+..
T Consensus 16 ~~~~~C~~C~~~~~-~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~k 71 (75)
T 2k16_A 16 NQIWICPGCNKPDD-GSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIKK 71 (75)
T ss_dssp CEEECBTTTTBCCS-SCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHCS
T ss_pred CCCcCCCCCCCCCC-CCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchhh
Confidence 34567999987753 3323222 38989999999765432 23459999877654
No 78
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=86.70 E-value=0.22 Score=36.62 Aligned_cols=49 Identities=24% Similarity=0.388 Sum_probs=31.7
Q ss_pred CCccceecccccCCCceEEeCCCCccchhhHHHH------H--hhCCCCCCccccccC
Q 022509 81 SRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSW------L--TSWRTFCPVCKRDAR 130 (296)
Q Consensus 81 ~~~CaICLe~f~~~d~vr~LpCgH~FH~~CId~W------L--~~~~~tCPlCR~~i~ 130 (296)
...| ||...+..+..|..-.|.--||..|+..- + ....-.||.|+..-.
T Consensus 16 ~~~C-~C~~~~~~~~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~~~ 72 (76)
T 1wem_A 16 ALYC-ICRQPHNNRFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTILSG 72 (76)
T ss_dssp CCCS-TTCCCCCSSCEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHHSC
T ss_pred CCEE-ECCCccCCCCEEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCccC
Confidence 4667 89888764433333348999999998421 1 123566999986544
No 79
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=86.23 E-value=0.18 Score=35.99 Aligned_cols=51 Identities=24% Similarity=0.599 Sum_probs=33.2
Q ss_pred CCCCccceecccccCCCceEEe--CCCCccchhhHHHHHh------hCCCCCCcccccc
Q 022509 79 CTSRTCAICLEDYSVGEKLRIL--PCRHKFHAFCVDSWLT------SWRTFCPVCKRDA 129 (296)
Q Consensus 79 ~~~~~CaICLe~f~~~d~vr~L--pCgH~FH~~CId~WL~------~~~~tCPlCR~~i 129 (296)
.++..|.||......++...++ .|.-.||..|+..=+. ...=.|+.|+...
T Consensus 4 ~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~~ 62 (66)
T 2yt5_A 4 GSSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFAT 62 (66)
T ss_dssp CCCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHTT
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCcc
Confidence 3568999999875432222222 3899999999875332 2344599997644
No 80
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=86.07 E-value=1.2 Score=30.02 Aligned_cols=30 Identities=17% Similarity=0.186 Sum_probs=14.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 022509 14 WSIMAISFISLLAMSAVLATCFFVRRHRIR 43 (296)
Q Consensus 14 w~iliI~fi~Ll~i~~vl~i~~~i~r~r~r 43 (296)
..+.+.++.+++++++.+.++++++|++++
T Consensus 12 ~~Ia~~vVGvll~vi~~l~~~~~~RRR~~~ 41 (44)
T 2jwa_A 12 TSIISAVVGILLVVVLGVVFGILIKRRQQK 41 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCSC
T ss_pred cchHHHHHHHHHHHHHHHHHHhheehhhhh
Confidence 334444444444444444455555555443
No 81
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=85.78 E-value=0.15 Score=36.23 Aligned_cols=50 Identities=26% Similarity=0.569 Sum_probs=32.8
Q ss_pred CCCCCccceecccccCCCceEEeCCCCccchhhHHHHHhh---CCCCCCccccccC
Q 022509 78 NCTSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTS---WRTFCPVCKRDAR 130 (296)
Q Consensus 78 ~~~~~~CaICLe~f~~~d~vr~LpCgH~FH~~CId~WL~~---~~~tCPlCR~~i~ 130 (296)
+..+..|.||.+. ++.+.--.|...||..|++.-|.. ..=.||.|+....
T Consensus 6 d~~~~~C~vC~~~---g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~~ 58 (61)
T 1mm2_A 6 DHHMEFCRVCKDG---GELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPAL 58 (61)
T ss_dssp CSSCSSCTTTCCC---SSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTCC
T ss_pred cCCCCcCCCCCCC---CCEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCchh
Confidence 3456889999863 333332238889999999864442 2335999976544
No 82
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=85.14 E-value=0.22 Score=39.07 Aligned_cols=47 Identities=26% Similarity=0.599 Sum_probs=31.6
Q ss_pred CCCccceecccccCCCceEEeCCCCccchhhHHHHHhh---CCCCCCccc
Q 022509 80 TSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTS---WRTFCPVCK 126 (296)
Q Consensus 80 ~~~~CaICLe~f~~~d~vr~LpCgH~FH~~CId~WL~~---~~~tCPlCR 126 (296)
++..|.||.+.-+..+.+.--.|+..||..|++.++.. ..-.||.|+
T Consensus 6 ~~~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~W~C~~C~ 55 (111)
T 2ysm_A 6 SGANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVTPLKRAGWQCPECK 55 (111)
T ss_dssp CCSCBTTTCCCCCTTTSEECSSSCCEECTTTTTCCCCTTTSTTCCCTTTC
T ss_pred CCCCCcCCCCCCCCcCCeECCCCCCCcChHHhCCccccccccCccCCcCC
Confidence 46889999887433333444459999999999887642 223466554
No 83
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=85.11 E-value=0.35 Score=34.25 Aligned_cols=47 Identities=23% Similarity=0.634 Sum_probs=32.1
Q ss_pred CCCCccceecccccCCCceEEeCCCCccchhhHHHHHhh---CCCCCCccccc
Q 022509 79 CTSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTS---WRTFCPVCKRD 128 (296)
Q Consensus 79 ~~~~~CaICLe~f~~~d~vr~LpCgH~FH~~CId~WL~~---~~~tCPlCR~~ 128 (296)
..+..|.||.+. ++.+.--.|.-.||..|++.=+.. ..-.||.|+..
T Consensus 9 ~~~~~C~vC~~~---g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~~ 58 (61)
T 2l5u_A 9 DHQDYCEVCQQG---GEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEKE 58 (61)
T ss_dssp CCCSSCTTTSCC---SSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGGG
T ss_pred CCCCCCccCCCC---CcEEECCCCChhhhhhccCCCCCCCCCCceECcccccc
Confidence 356889999873 333333348889999999975442 23459999754
No 84
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=83.48 E-value=0.51 Score=36.19 Aligned_cols=35 Identities=17% Similarity=0.471 Sum_probs=24.1
Q ss_pred CCCCccceecccccCCCceEEeCCCCccchhhHHHH
Q 022509 79 CTSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSW 114 (296)
Q Consensus 79 ~~~~~CaICLe~f~~~d~vr~LpCgH~FH~~CId~W 114 (296)
..+..|.||- .|..++....=-|+-+||..|+++-
T Consensus 13 ~~D~~C~VC~-~~t~~~l~pCRvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 13 VNDEMCDVCE-VWTAESLFPCRVCTRVFHDGCLRRM 47 (89)
T ss_dssp CCSCCCTTTC-CCCSSCCSSCSSSSSCCCHHHHHHH
T ss_pred CCCcccCccc-cccccceeccccccccccHhhcccc
Confidence 3578999985 3444433222238999999999985
No 85
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=82.70 E-value=0.19 Score=43.74 Aligned_cols=49 Identities=27% Similarity=0.487 Sum_probs=32.4
Q ss_pred CCCCCccceecccccCCCceEEeCCCCccchhhHHHHHhh---CCCCCCcccccc
Q 022509 78 NCTSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTS---WRTFCPVCKRDA 129 (296)
Q Consensus 78 ~~~~~~CaICLe~f~~~d~vr~LpCgH~FH~~CId~WL~~---~~~tCPlCR~~i 129 (296)
+..+..|.+|.+. ++.+..=.|...||..|++..+.. +.-.||.|+..-
T Consensus 4 d~~~~~C~~C~~~---g~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~ 55 (207)
T 3u5n_A 4 DPNEDWCAVCQNG---GDLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIG 55 (207)
T ss_dssp CSSCSSBTTTCCC---EEEEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCCCCCCCCCCC---CceEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCcc
Confidence 3456889999854 332221128899999999876653 233599998643
No 86
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=81.29 E-value=0.43 Score=41.30 Aligned_cols=48 Identities=19% Similarity=0.419 Sum_probs=33.2
Q ss_pred CCccceecccccCCCc---eEEe-CCCCccchhhHHH------HHhh----CCCCCCccccc
Q 022509 81 SRTCAICLEDYSVGEK---LRIL-PCRHKFHAFCVDS------WLTS----WRTFCPVCKRD 128 (296)
Q Consensus 81 ~~~CaICLe~f~~~d~---vr~L-pCgH~FH~~CId~------WL~~----~~~tCPlCR~~ 128 (296)
+..|+||...|.+++. +..- .|..-||..|+.. -+.. ..-.||.|+..
T Consensus 2 G~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~ 63 (183)
T 3lqh_A 2 GNFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTER 63 (183)
T ss_dssp CCBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCS
T ss_pred cCcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCC
Confidence 4679999999988763 4333 3899999999732 1210 13469999865
No 87
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=81.15 E-value=0.18 Score=35.03 Aligned_cols=46 Identities=26% Similarity=0.593 Sum_probs=31.0
Q ss_pred CCCCccceecccccCCCceEEeCCCCccchhhHHHHHhh---CCCCCCcccc
Q 022509 79 CTSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTS---WRTFCPVCKR 127 (296)
Q Consensus 79 ~~~~~CaICLe~f~~~d~vr~LpCgH~FH~~CId~WL~~---~~~tCPlCR~ 127 (296)
..+..|.||.+. ++.+.--.|...||..|++.=|.. ..-.||.|+.
T Consensus 7 ~~~~~C~vC~~~---g~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 7 GHEDFCSVCRKS---GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp SSCCSCSSSCCS---SCCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCCCCccCCCC---CeEEEcCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 356889999874 443333348999999999864442 2234998864
No 88
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=81.04 E-value=0.33 Score=41.40 Aligned_cols=47 Identities=30% Similarity=0.541 Sum_probs=32.2
Q ss_pred CCCccceecccccCCCceEEeCCCCccchhhHHHHHhh---CCCCCCcccccc
Q 022509 80 TSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTS---WRTFCPVCKRDA 129 (296)
Q Consensus 80 ~~~~CaICLe~f~~~d~vr~LpCgH~FH~~CId~WL~~---~~~tCPlCR~~i 129 (296)
++..|.||.+. ++.+..=.|.-.||..|++.-+.. +.-.||.|+..-
T Consensus 3 ~~~~C~~C~~~---g~ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~ 52 (184)
T 3o36_A 3 NEDWCAVCQNG---GELLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLS 52 (184)
T ss_dssp SCSSCTTTCCC---SSCEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCccccCCCC---CeeeecCCCCcccCccccCCCCCCCCCCCEECccccCcc
Confidence 45789999854 443333338899999999876653 223599998654
No 89
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=80.75 E-value=1.2 Score=37.13 Aligned_cols=47 Identities=21% Similarity=0.486 Sum_probs=32.4
Q ss_pred CCCCCccceecccccCCCceEEeCCCCccchhhHHHHHh----------hCCCCCCcccc
Q 022509 78 NCTSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLT----------SWRTFCPVCKR 127 (296)
Q Consensus 78 ~~~~~~CaICLe~f~~~d~vr~LpCgH~FH~~CId~WL~----------~~~~tCPlCR~ 127 (296)
+..+..|.||.+. ++-+..=.|--.||..||+.=+. ...=.||+|+.
T Consensus 60 Dg~~d~C~vC~~G---G~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 60 DGMDEQCRWCAEG---GNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp TSCBCSCSSSCCC---SSEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred CCCCCeecccCCC---CcEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 4457899999875 44333224889999999996552 23345999974
No 90
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=80.74 E-value=0.44 Score=36.23 Aligned_cols=51 Identities=18% Similarity=0.473 Sum_probs=33.6
Q ss_pred CCccceecccccCCCceEEe--CCCCccchhhHHHHHh-------hCCCCCCccccccCC
Q 022509 81 SRTCAICLEDYSVGEKLRIL--PCRHKFHAFCVDSWLT-------SWRTFCPVCKRDART 131 (296)
Q Consensus 81 ~~~CaICLe~f~~~d~vr~L--pCgH~FH~~CId~WL~-------~~~~tCPlCR~~i~~ 131 (296)
+..|.||...-...+...++ .|...||..|++.=|. ...=.|+.|+.....
T Consensus 16 ~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~~ 75 (88)
T 1wev_A 16 GLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMKR 75 (88)
T ss_dssp CCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHCC
T ss_pred CCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccchhhh
Confidence 57899999764332222333 2899999999986543 223459999775543
No 91
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=80.69 E-value=1.1 Score=33.05 Aligned_cols=49 Identities=24% Similarity=0.429 Sum_probs=31.8
Q ss_pred CCCccceecccccCCCceEEe-CCCCccchhhHHHHHh----hCCCCCCcccccc
Q 022509 80 TSRTCAICLEDYSVGEKLRIL-PCRHKFHAFCVDSWLT----SWRTFCPVCKRDA 129 (296)
Q Consensus 80 ~~~~CaICLe~f~~~d~vr~L-pCgH~FH~~CId~WL~----~~~~tCPlCR~~i 129 (296)
....| ||...+..+..+..- .|.--||..|+..-.. ...-.||.|+...
T Consensus 11 ~~~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~ 64 (79)
T 1wep_A 11 VPVYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVF 64 (79)
T ss_dssp CCCCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTS
T ss_pred CccEE-EcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCccccc
Confidence 34667 999887644444333 3898999999853221 1245699998654
No 92
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=79.12 E-value=0.59 Score=31.50 Aligned_cols=45 Identities=24% Similarity=0.571 Sum_probs=28.8
Q ss_pred ccceecccccCCCceEEeCCCCccchhhHHHHHhh---CCCCCCcccc
Q 022509 83 TCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTS---WRTFCPVCKR 127 (296)
Q Consensus 83 ~CaICLe~f~~~d~vr~LpCgH~FH~~CId~WL~~---~~~tCPlCR~ 127 (296)
.|.||...-..++.+.--.|...||..|++.=+.. +.=.||.|+.
T Consensus 2 ~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCCCCEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 58888876433333333348899999999753332 2234999964
No 93
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=78.87 E-value=0.86 Score=35.14 Aligned_cols=47 Identities=32% Similarity=0.685 Sum_probs=29.1
Q ss_pred CCCccceecccccCCCceEEeC--CC-CccchhhHHHHHhh---CCCCCCccccccC
Q 022509 80 TSRTCAICLEDYSVGEKLRILP--CR-HKFHAFCVDSWLTS---WRTFCPVCKRDAR 130 (296)
Q Consensus 80 ~~~~CaICLe~f~~~d~vr~Lp--Cg-H~FH~~CId~WL~~---~~~tCPlCR~~i~ 130 (296)
+...| ||..... ++.|..=. |. ..||..|+. |.. .+-.||.|+..-.
T Consensus 35 e~~yC-iC~~~~~-g~MI~CD~~dC~~~WfH~~CVg--l~~~p~g~W~Cp~C~~~~~ 87 (91)
T 1weu_A 35 EPTYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQESG 87 (91)
T ss_dssp CCBCS-TTCCBCC-SCCCCCSCSSCSCCCCCSTTTT--CSSCCCSSCCCTTTCCCCS
T ss_pred CCcEE-ECCCCCC-CCEeEecCCCCCCCCEecccCC--cCcCCCCCEECcCccCcCC
Confidence 45667 9988653 43332222 44 579999997 332 2346999976543
No 94
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=78.79 E-value=3.4 Score=31.87 Aligned_cols=58 Identities=21% Similarity=0.401 Sum_probs=42.4
Q ss_pred CCCccceecccccCCC--ceEEe--CCCCccchhhHHHHHhhCCCCCCccccccCCCCCCCC
Q 022509 80 TSRTCAICLEDYSVGE--KLRIL--PCRHKFHAFCVDSWLTSWRTFCPVCKRDARTSTGEPP 137 (296)
Q Consensus 80 ~~~~CaICLe~f~~~d--~vr~L--pCgH~FH~~CId~WL~~~~~tCPlCR~~i~~~~~~~~ 137 (296)
....|.||-+++.... ++.+. .|+--.|+.|.+-=.+..+..||-|+..+...++.|.
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYkr~kgsp~ 76 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYKRLRGSPR 76 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCCCCTTCCC
T ss_pred CCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccccccCCCC
Confidence 4579999999965543 22222 3777789999988777777789999998876555543
No 95
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=78.57 E-value=3 Score=27.91 Aligned_cols=13 Identities=38% Similarity=0.698 Sum_probs=5.4
Q ss_pred HHHHHHHHHhhhh
Q 022509 30 VLATCFFVRRHRI 42 (296)
Q Consensus 30 vl~i~~~i~r~r~ 42 (296)
+++++++++|+++
T Consensus 28 ~~~~~~~~RRr~~ 40 (44)
T 2ks1_B 28 ALGIGLFMRRRHI 40 (44)
T ss_dssp HHHHHHHHHTTTC
T ss_pred HHHHHHHhhhhHh
Confidence 3334444444433
No 96
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=78.46 E-value=0.64 Score=35.38 Aligned_cols=52 Identities=17% Similarity=0.417 Sum_probs=32.5
Q ss_pred CCCccceecccccCCCceEEe--CCCCccchhhHHHHHh-hCCCCCCccccccCC
Q 022509 80 TSRTCAICLEDYSVGEKLRIL--PCRHKFHAFCVDSWLT-SWRTFCPVCKRDART 131 (296)
Q Consensus 80 ~~~~CaICLe~f~~~d~vr~L--pCgH~FH~~CId~WL~-~~~~tCPlCR~~i~~ 131 (296)
++..|.||.+.-...+...++ .|.-.||..|+..-+. .+.-.||.|+.....
T Consensus 24 ~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~~~ 78 (88)
T 2l43_A 24 EDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSRAR 78 (88)
T ss_dssp CCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHHTTS
T ss_pred CCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccCccch
Confidence 468999999764222222222 3888899999975322 233459999765443
No 97
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=78.24 E-value=1.6 Score=34.36 Aligned_cols=46 Identities=24% Similarity=0.462 Sum_probs=29.0
Q ss_pred CCccceecccc------cCCCceEEeCCCCccchhhHHH------HHhhCCCCCCccc
Q 022509 81 SRTCAICLEDY------SVGEKLRILPCRHKFHAFCVDS------WLTSWRTFCPVCK 126 (296)
Q Consensus 81 ~~~CaICLe~f------~~~d~vr~LpCgH~FH~~CId~------WL~~~~~tCPlCR 126 (296)
...|.+|+..= ..++.+.--.|+..||..|++. .+....-.||-|+
T Consensus 5 ~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~ 62 (112)
T 3v43_A 5 IPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLKFSPELTVRVKALRWQCIECK 62 (112)
T ss_dssp CSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHTCCHHHHHHHHTSCCCCTTTC
T ss_pred CccccccCCchhhCcCCCchhceEhhhcCCCCCCchhcCCHHHHHHhhccccccccCC
Confidence 46799998763 1223344445999999999963 2333344577775
No 98
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=78.08 E-value=2.3 Score=32.38 Aligned_cols=37 Identities=24% Similarity=0.406 Sum_probs=29.6
Q ss_pred CCCccceecccccCCCceEEeC--CCCccchhhHHHHHhh
Q 022509 80 TSRTCAICLEDYSVGEKLRILP--CRHKFHAFCVDSWLTS 117 (296)
Q Consensus 80 ~~~~CaICLe~f~~~d~vr~Lp--CgH~FH~~CId~WL~~ 117 (296)
....|.+|.|.+++..-|. -| =+|.||..|-+..++.
T Consensus 14 a~l~CtlC~erLEdtHFVQ-CPsv~~HkFCFpCsr~sIk~ 52 (93)
T 2cs3_A 14 GPLCCTICHERLEDTHFVQ-CPSVPSHKFCFPCSRESIKA 52 (93)
T ss_dssp CSCCCSSSCSCCSSTTSEE-CSSCSSCEECHHHHHHHHHH
T ss_pred CeeEeecchhhhccCceee-CCCccCCeeeccccHHHHHh
Confidence 4578999999998775554 33 3899999999999885
No 99
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=77.30 E-value=0.35 Score=38.09 Aligned_cols=49 Identities=20% Similarity=0.430 Sum_probs=33.4
Q ss_pred CCccceecccccCCCceEEe--CCCCccchhhHHHH------H---hhCCCCCCcccccc
Q 022509 81 SRTCAICLEDYSVGEKLRIL--PCRHKFHAFCVDSW------L---TSWRTFCPVCKRDA 129 (296)
Q Consensus 81 ~~~CaICLe~f~~~d~vr~L--pCgH~FH~~CId~W------L---~~~~~tCPlCR~~i 129 (296)
...|.||...+.+++.+..- .|.--||..|+..= + ...+-.||.|+..-
T Consensus 3 ~~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~~ 62 (105)
T 2xb1_A 3 VYPCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKTK 62 (105)
T ss_dssp CCBCTTTCSBCCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHTT
T ss_pred cCCCCCCCCccCCCCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccCcC
Confidence 36799999998776555544 38888999997421 1 01234599998753
No 100
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=76.92 E-value=0.85 Score=31.11 Aligned_cols=45 Identities=18% Similarity=0.257 Sum_probs=29.7
Q ss_pred CccceecccccCCCceEEe--CCCCccchhhHHHHH---hhCCCCCCccc
Q 022509 82 RTCAICLEDYSVGEKLRIL--PCRHKFHAFCVDSWL---TSWRTFCPVCK 126 (296)
Q Consensus 82 ~~CaICLe~f~~~d~vr~L--pCgH~FH~~CId~WL---~~~~~tCPlCR 126 (296)
-.|.||...+.+++.+..- .|.--||..|+..-. +..+-.||.|+
T Consensus 3 c~cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 3 CAAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp CSCTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred ccCCCCcCccCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 3578899888665544443 388889999975321 12456699985
No 101
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=76.47 E-value=0.57 Score=39.35 Aligned_cols=48 Identities=23% Similarity=0.425 Sum_probs=31.7
Q ss_pred CCCccceecccccCCCceEEe-CCCCccchhhHHHHHh----hCCCCCCccccc
Q 022509 80 TSRTCAICLEDYSVGEKLRIL-PCRHKFHAFCVDSWLT----SWRTFCPVCKRD 128 (296)
Q Consensus 80 ~~~~CaICLe~f~~~d~vr~L-pCgH~FH~~CId~WL~----~~~~tCPlCR~~ 128 (296)
+...| ||......+..+..- .|.-.||..|+..-.. ...-.||.|+..
T Consensus 7 ~~~~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~ 59 (174)
T 2ri7_A 7 TKLYC-ICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQST 59 (174)
T ss_dssp CCEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHHH
T ss_pred CCcEe-eCCCCCCCCCCEeECCCCCchhChhhcCCchhhccCccCeecCCCcch
Confidence 45778 999887544433333 3899999999853211 124469999864
No 102
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=76.35 E-value=0.24 Score=34.79 Aligned_cols=48 Identities=25% Similarity=0.569 Sum_probs=32.6
Q ss_pred CCCccceecccccCCCceEEeCCCCccchhhHHHHHhh---CCCCCCccccccC
Q 022509 80 TSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTS---WRTFCPVCKRDAR 130 (296)
Q Consensus 80 ~~~~CaICLe~f~~~d~vr~LpCgH~FH~~CId~WL~~---~~~tCPlCR~~i~ 130 (296)
.+..|.||.+. ++.+.--.|.-.||..|++.=+.. ..-.||.|+....
T Consensus 4 ~~~~C~vC~~~---g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~~ 54 (60)
T 2puy_A 4 HEDFCSVCRKS---GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQML 54 (60)
T ss_dssp CCSSCTTTCCC---SSCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHHHH
T ss_pred CCCCCcCCCCC---CcEEEcCCCCcCEECCcCCCCcCCCCCCceEChhccChhh
Confidence 46789999874 443333348999999999864432 2335999976554
No 103
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=76.09 E-value=0.83 Score=33.77 Aligned_cols=50 Identities=16% Similarity=0.328 Sum_probs=32.1
Q ss_pred CCCccceecccccCCCceEEe--CCCCccchhhHHHHHhh--------CCCCCCccccccC
Q 022509 80 TSRTCAICLEDYSVGEKLRIL--PCRHKFHAFCVDSWLTS--------WRTFCPVCKRDAR 130 (296)
Q Consensus 80 ~~~~CaICLe~f~~~d~vr~L--pCgH~FH~~CId~WL~~--------~~~tCPlCR~~i~ 130 (296)
....| ||......+..|..= .|..-||..|+.---.. .+-.||.|+..-.
T Consensus 15 ~~~~C-iC~~~~~~g~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~~~ 74 (78)
T 1wew_A 15 IKVRC-VCGNSLETDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLTSG 74 (78)
T ss_dssp CCCCC-SSCCCCCCSCEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHCCS
T ss_pred CCEEe-ECCCcCCCCCEEEECCccCCccccCEEEccccccccccccCCCCEECCCCCcccC
Confidence 45678 898875445444433 58899999998532111 1445999986543
No 104
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=75.69 E-value=1.8 Score=35.37 Aligned_cols=47 Identities=23% Similarity=0.511 Sum_probs=30.5
Q ss_pred CCCCCccceecccccCCCceEEeCCCCccchhhHHHHH------h----hCCCCCCcccc
Q 022509 78 NCTSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWL------T----SWRTFCPVCKR 127 (296)
Q Consensus 78 ~~~~~~CaICLe~f~~~d~vr~LpCgH~FH~~CId~WL------~----~~~~tCPlCR~ 127 (296)
+..+..|.||.+. ++-+--=.|-..||.+||+.-+ + ...=.|++|+-
T Consensus 54 Dg~~~~C~vC~dG---G~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~ 110 (129)
T 3ql9_A 54 DGMDEQCRWCAEG---GNLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHP 110 (129)
T ss_dssp TSCBSSCTTTCCC---SEEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCC
T ss_pred CCCCCcCeecCCC---CeeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCC
Confidence 4456789999875 3222212378999999999742 2 12335999964
No 105
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=75.64 E-value=0.46 Score=34.59 Aligned_cols=50 Identities=18% Similarity=0.284 Sum_probs=32.0
Q ss_pred CCCccceecccccCCCceEEe-CCCCccchhhHHHHHh---hCCCCCCccccccC
Q 022509 80 TSRTCAICLEDYSVGEKLRIL-PCRHKFHAFCVDSWLT---SWRTFCPVCKRDAR 130 (296)
Q Consensus 80 ~~~~CaICLe~f~~~d~vr~L-pCgH~FH~~CId~WL~---~~~~tCPlCR~~i~ 130 (296)
....| ||......++.+..- .|.--||..|+..--. ..+-.||.|+..-.
T Consensus 15 ~~~~C-~C~~~~~~g~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~~~~ 68 (72)
T 1wee_A 15 WKVDC-KCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIELSG 68 (72)
T ss_dssp SEECC-TTCCCSCCSSCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHHHCS
T ss_pred cceEe-eCCCccCCCCcEEECCCCCCccCCeeeccCccccCCCcEECCCccCCCC
Confidence 44678 798876555433333 4888899999864321 12345999986543
No 106
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=75.37 E-value=1.4 Score=32.27 Aligned_cols=47 Identities=32% Similarity=0.685 Sum_probs=28.7
Q ss_pred CCCccceecccccCCCceEEeC--CC-CccchhhHHHHHhh---CCCCCCccccccC
Q 022509 80 TSRTCAICLEDYSVGEKLRILP--CR-HKFHAFCVDSWLTS---WRTFCPVCKRDAR 130 (296)
Q Consensus 80 ~~~~CaICLe~f~~~d~vr~Lp--Cg-H~FH~~CId~WL~~---~~~tCPlCR~~i~ 130 (296)
+...| ||..... ++.|..=. |. ..||..|+. |.. .+-.||.|+..-.
T Consensus 15 ~~~~C-~C~~~~~-g~MI~CD~~~C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~~~ 67 (71)
T 1wen_A 15 EPTYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQESG 67 (71)
T ss_dssp SCCCS-TTCCCSC-SSEECCSCSSCSCCCEETTTTT--CSSCCSSCCCCTTTSSCSS
T ss_pred CCCEE-ECCCCCC-CCEeEeeCCCCCCccEecccCC--cCcCCCCCEECCCCCcccc
Confidence 45677 8987643 43222112 44 689999998 443 2345999976543
No 107
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=75.02 E-value=4.4 Score=27.15 Aligned_cols=11 Identities=36% Similarity=0.646 Sum_probs=4.3
Q ss_pred HHHHHHHHhhh
Q 022509 31 LATCFFVRRHR 41 (296)
Q Consensus 31 l~i~~~i~r~r 41 (296)
+.++++++|++
T Consensus 28 ~~~~~~~RRRr 38 (44)
T 2l2t_A 28 LTFAVYVRRKS 38 (44)
T ss_dssp HHHHHHHHTTC
T ss_pred HHHHHHhhhhh
Confidence 33344444333
No 108
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=73.51 E-value=0.77 Score=35.55 Aligned_cols=46 Identities=20% Similarity=0.245 Sum_probs=29.5
Q ss_pred CCccceecccccCCCceEEeCCCCccchhhHHHHHhh--CCCCCCcccc
Q 022509 81 SRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTS--WRTFCPVCKR 127 (296)
Q Consensus 81 ~~~CaICLe~f~~~d~vr~LpCgH~FH~~CId~WL~~--~~~tCPlCR~ 127 (296)
...| ||......+..|..-.|.-.||..|+..=+.. ..-.||.|+.
T Consensus 28 ~vrC-iC~~~~~~~~mi~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~~ 75 (98)
T 2lv9_A 28 VTRC-ICGFTHDDGYMICCDKCSVWQHIDCMGIDRQHIPDTYLCERCQP 75 (98)
T ss_dssp BCCC-TTSCCSCSSCEEEBTTTCBEEETTTTTCCTTSCCSSBCCTTTSS
T ss_pred CEEe-ECCCccCCCcEEEcCCCCCcCcCcCCCCCccCCCCCEECCCCcC
Confidence 3567 89877655543333348999999998652221 1235999973
No 109
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=73.42 E-value=1.6 Score=33.45 Aligned_cols=48 Identities=21% Similarity=0.424 Sum_probs=32.2
Q ss_pred CCCCCccceecccccCCCceEEeCCCCccchhhHHHHHhh---CCCCCCccccc
Q 022509 78 NCTSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTS---WRTFCPVCKRD 128 (296)
Q Consensus 78 ~~~~~~CaICLe~f~~~d~vr~LpCgH~FH~~CId~WL~~---~~~tCPlCR~~ 128 (296)
+..+..|.||.+. ++.+..-.|.-.||..|++.=|.. ..-.||.|+..
T Consensus 22 d~n~~~C~vC~~~---g~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~ 72 (88)
T 1fp0_A 22 DDSATICRVCQKP---GDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 72 (88)
T ss_dssp SSSSSCCSSSCSS---SCCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCC
T ss_pred CCCCCcCcCcCCC---CCEEECCCCCCceecccCCCCCCCCcCCCcCCccccCC
Confidence 3456899999865 343333338888999999765543 22359999754
No 110
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=72.39 E-value=0.85 Score=32.62 Aligned_cols=46 Identities=26% Similarity=0.548 Sum_probs=31.3
Q ss_pred CCCccceecccccCCCceEEeCCCCccchhhHHHHHhh---CCCCCCccccc
Q 022509 80 TSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTS---WRTFCPVCKRD 128 (296)
Q Consensus 80 ~~~~CaICLe~f~~~d~vr~LpCgH~FH~~CId~WL~~---~~~tCPlCR~~ 128 (296)
.+..|.||.+. ++.+..-.|.-.||..|++.=|.. ..-.||.|+..
T Consensus 7 ~~~~C~vC~~~---g~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~ 55 (66)
T 1xwh_A 7 NEDECAVCRDG---GELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQA 55 (66)
T ss_dssp CCCSBSSSSCC---SSCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHHT
T ss_pred CCCCCccCCCC---CCEEEcCCCChhhcccccCCCcCcCCCCCeECccccCc
Confidence 46889999864 443333348889999999854432 23359999754
No 111
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=71.31 E-value=1.2 Score=35.11 Aligned_cols=33 Identities=21% Similarity=0.433 Sum_probs=22.6
Q ss_pred CccceecccccC-------CCceEEeCCCCccchhhHHHH
Q 022509 82 RTCAICLEDYSV-------GEKLRILPCRHKFHAFCVDSW 114 (296)
Q Consensus 82 ~~CaICLe~f~~-------~d~vr~LpCgH~FH~~CId~W 114 (296)
..|.||++.-.. ++.+.--.|+..||..|++.+
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~ 41 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFT 41 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCC
T ss_pred CcCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCCh
Confidence 469999876422 233444458999999998754
No 112
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=71.09 E-value=2.5 Score=30.29 Aligned_cols=33 Identities=21% Similarity=0.602 Sum_probs=24.9
Q ss_pred CCCccceecccccCCCceEEe--CCCCccchhhHH
Q 022509 80 TSRTCAICLEDYSVGEKLRIL--PCRHKFHAFCVD 112 (296)
Q Consensus 80 ~~~~CaICLe~f~~~d~vr~L--pCgH~FH~~CId 112 (296)
....|.+|...+..++.++.- .|.--||..|+.
T Consensus 7 ~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvg 41 (65)
T 2vpb_A 7 PVYPCGICTNEVNDDQDAILCEASCQKWFHRICTG 41 (65)
T ss_dssp --CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHHT
T ss_pred CcCcCccCCCccCCCCCeEecccCccccCchhccC
Confidence 457899999998877655544 488889999974
No 113
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=71.00 E-value=1.3 Score=32.42 Aligned_cols=50 Identities=18% Similarity=0.378 Sum_probs=31.2
Q ss_pred CCCCccceeccccc-CCCceEEe-CCCCccchhhHHHHHh-hCCCCCCccccc
Q 022509 79 CTSRTCAICLEDYS-VGEKLRIL-PCRHKFHAFCVDSWLT-SWRTFCPVCKRD 128 (296)
Q Consensus 79 ~~~~~CaICLe~f~-~~d~vr~L-pCgH~FH~~CId~WL~-~~~~tCPlCR~~ 128 (296)
.++..|.||.+.-. +.+.+..- .|.-.||..|+..-.. .+.=.||.|+..
T Consensus 14 ~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~~ 66 (71)
T 2ku3_A 14 DEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQS 66 (71)
T ss_dssp CSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCcCCCCCcCCccCcCc
Confidence 34688999987642 22233222 3889999999975321 223459999653
No 114
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=70.81 E-value=4.5 Score=29.49 Aligned_cols=23 Identities=13% Similarity=0.124 Sum_probs=9.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHH
Q 022509 14 WSIMAISFISLLAMSAVLATCFF 36 (296)
Q Consensus 14 w~iliI~fi~Ll~i~~vl~i~~~ 36 (296)
|..++|+++..+.++++..++++
T Consensus 7 ~p~~LivlGg~~~lll~~glcI~ 29 (70)
T 2klu_A 7 GSMALIVLGGVAGLLLFIGLGIF 29 (70)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHhHHHHHHHHHHHHHH
Confidence 33333444444444444444443
No 115
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=70.04 E-value=9.4 Score=26.62 Aligned_cols=20 Identities=15% Similarity=0.305 Sum_probs=8.8
Q ss_pred ccchhhhHHHHHHHHHHHHH
Q 022509 11 NSAWSIMAISFISLLAMSAV 30 (296)
Q Consensus 11 ~s~w~iliI~fi~Ll~i~~v 30 (296)
...|.+++-+++.+++++++
T Consensus 10 vp~wiIi~svl~GLllL~li 29 (54)
T 2knc_A 10 IPIWWVLVGVLGGLLLLTIL 29 (54)
T ss_dssp CCHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHH
Confidence 34455544444444444433
No 116
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=68.08 E-value=0.86 Score=33.03 Aligned_cols=48 Identities=17% Similarity=0.388 Sum_probs=30.4
Q ss_pred CCCCccceecccccCCCceEEeCCCCccchhhHHHHHh--hCCCCCCcccc
Q 022509 79 CTSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLT--SWRTFCPVCKR 127 (296)
Q Consensus 79 ~~~~~CaICLe~f~~~d~vr~LpCgH~FH~~CId~WL~--~~~~tCPlCR~ 127 (296)
.+...| ||...+..+..|..-.|.--||..|+..--. ...-.||.|+.
T Consensus 17 ~~~~~C-iC~~~~~~~~MIqCd~C~~WfH~~Cvgi~~~~~~~~~~C~~C~~ 66 (68)
T 3o70_A 17 QGLVTC-FCMKPFAGRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 66 (68)
T ss_dssp TTCCCS-TTCCCCTTCCEEECTTTCCEEETTTTTCCTTSCCSSCCCHHHHT
T ss_pred CCceEe-ECCCcCCCCCEEECCCCCccccccccCcCcccCCCcEECCCCCC
Confidence 345778 9988765322333334899999999864221 12345999964
No 117
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=67.47 E-value=1.4 Score=34.73 Aligned_cols=46 Identities=26% Similarity=0.590 Sum_probs=29.4
Q ss_pred CccceecccccCCCceEE-eCCCCccchhhHHHHHhh---CCCCCCcccc
Q 022509 82 RTCAICLEDYSVGEKLRI-LPCRHKFHAFCVDSWLTS---WRTFCPVCKR 127 (296)
Q Consensus 82 ~~CaICLe~f~~~d~vr~-LpCgH~FH~~CId~WL~~---~~~tCPlCR~ 127 (296)
..|.||.+.-.+.+.+.. -.|...||..|++.-|.. ..=.||.||.
T Consensus 62 ~~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 62 KTCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQICRP 111 (112)
T ss_dssp CCBTTTCCCCCTTCCCEECTTTCCEECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred CccccccCcCCCccceEEcCCCCCeeecccCCCCCCCCCCCCeECCCCCC
Confidence 468888875323233322 238999999999765543 2235999975
No 118
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=64.39 E-value=1.1 Score=38.52 Aligned_cols=45 Identities=22% Similarity=0.448 Sum_probs=30.6
Q ss_pred CCccceecccccCCCceEEeCCCCccchhhHHHHHhh---CCCCCCccccc
Q 022509 81 SRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTS---WRTFCPVCKRD 128 (296)
Q Consensus 81 ~~~CaICLe~f~~~d~vr~LpCgH~FH~~CId~WL~~---~~~tCPlCR~~ 128 (296)
+..|.+|.+. ++.+..-.|.-.||..|++.=+.. +.-.||.|+..
T Consensus 2 ~~~C~~C~~~---g~ll~Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~ 49 (189)
T 2ro1_A 2 ATICRVCQKP---GDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 49 (189)
T ss_dssp CCCBTTTCCC---SSCCCCTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSCS
T ss_pred CCcCccCCCC---CceeECCCCCchhccccCCCCcccCCCCCCCCcCccCC
Confidence 4679999855 443333348888999999754432 23359999765
No 119
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=64.28 E-value=0.68 Score=35.51 Aligned_cols=49 Identities=24% Similarity=0.421 Sum_probs=31.7
Q ss_pred CCCccceecccccCCCceEEeCCCCccchhhHHHHHhh---CCCCCCccccc
Q 022509 80 TSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTS---WRTFCPVCKRD 128 (296)
Q Consensus 80 ~~~~CaICLe~f~~~d~vr~LpCgH~FH~~CId~WL~~---~~~tCPlCR~~ 128 (296)
++..|.||...-..++.+..=.|...||..|++.=|.. ..=.||.|+..
T Consensus 15 ~~~~C~vC~~~~~~~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~ 66 (92)
T 2e6r_A 15 DSYICQVCSRGDEDDKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCILA 66 (92)
T ss_dssp CCCCCSSSCCSGGGGGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHHH
T ss_pred CCCCCccCCCcCCCCCEEEcCCCCchhccccCCCCcccCCCCCcCCccCcCc
Confidence 45789999987433322322238999999999743332 23349999764
No 120
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=61.87 E-value=12 Score=26.12 Aligned_cols=21 Identities=24% Similarity=0.529 Sum_probs=9.7
Q ss_pred ccchhhhHHHHHHHHHHHHHH
Q 022509 11 NSAWSIMAISFISLLAMSAVL 31 (296)
Q Consensus 11 ~s~w~iliI~fi~Ll~i~~vl 31 (296)
...|.+++-+++.++++++++
T Consensus 7 vp~WiIi~svl~GLLLL~Lii 27 (54)
T 2l8s_A 7 VPLWVILLSAFAGLLLLMLLI 27 (54)
T ss_dssp CCTHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHH
Confidence 345555544444444444333
No 121
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=59.64 E-value=5.8 Score=29.39 Aligned_cols=36 Identities=19% Similarity=0.481 Sum_probs=25.5
Q ss_pred CCCCccceecccccCCCceEEe-CCCCccchhhHHHH
Q 022509 79 CTSRTCAICLEDYSVGEKLRIL-PCRHKFHAFCVDSW 114 (296)
Q Consensus 79 ~~~~~CaICLe~f~~~d~vr~L-pCgH~FH~~CId~W 114 (296)
.+...|.+|...|..-..--.- .||.+|+..|....
T Consensus 17 ~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 53 (82)
T 2yw8_A 17 DEATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSNE 53 (82)
T ss_dssp CCCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCEE
T ss_pred ccCCcccCcCCcccCccccccCCCCCCEEChHHhCCe
Confidence 3457899999999764322222 39999999997653
No 122
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=58.77 E-value=1.1 Score=33.31 Aligned_cols=47 Identities=30% Similarity=0.679 Sum_probs=27.1
Q ss_pred CccceecccccCCCceEEeCCCCccchhhHHHHHhh---CC-CCCCccccc
Q 022509 82 RTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTS---WR-TFCPVCKRD 128 (296)
Q Consensus 82 ~~CaICLe~f~~~d~vr~LpCgH~FH~~CId~WL~~---~~-~tCPlCR~~ 128 (296)
-.|.||...-..++.+.-=.|...||..|++.-|.. .. =.||.|+.+
T Consensus 27 C~C~vC~~~~d~~~ll~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~d 77 (77)
T 3shb_A 27 CACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 77 (77)
T ss_dssp TSBTTTCCCSCGGGEEECTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC--
T ss_pred CcCCccCCCCCCcceeEeCCCCCccCcccCCCcccCCCCCCceECcCcccc
Confidence 357777655322221221138899999999865543 12 359999763
No 123
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=58.72 E-value=5.8 Score=28.13 Aligned_cols=40 Identities=23% Similarity=0.605 Sum_probs=29.8
Q ss_pred CCccceecccccCCCceEEeCCCCccchhhHHHHHhhCCCCCCccccccCC
Q 022509 81 SRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDART 131 (296)
Q Consensus 81 ~~~CaICLe~f~~~d~vr~LpCgH~FH~~CId~WL~~~~~tCPlCR~~i~~ 131 (296)
...|..|-+.+..++.+. .-+..||.+|+ .|-.|+..|..
T Consensus 9 ~~~C~~C~~~I~~~~~v~--a~~~~~H~~CF---------~C~~C~~~L~~ 48 (76)
T 2cu8_A 9 ASKCPKCDKTVYFAEKVS--SLGKDWHKFCL---------KCERCSKTLTP 48 (76)
T ss_dssp CCBCTTTCCBCCTTTEEE--ETTEEEETTTC---------BCSSSCCBCCT
T ss_pred CCCCcCCCCEeECCeEEE--ECCeEeeCCCC---------CCCCCCCccCC
Confidence 468999999988777554 35788998882 38888877764
No 124
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=58.45 E-value=4.3 Score=28.83 Aligned_cols=41 Identities=10% Similarity=0.062 Sum_probs=21.5
Q ss_pred CCccceecccccCCCceEEeCCCCccch-hhHHHHHhhCCCCCCccc
Q 022509 81 SRTCAICLEDYSVGEKLRILPCRHKFHA-FCVDSWLTSWRTFCPVCK 126 (296)
Q Consensus 81 ~~~CaICLe~f~~~d~vr~LpCgH~FH~-~CId~WL~~~~~tCPlCR 126 (296)
-..|..|...+..+. . ...=|.+|+. .|..+-+. ..|-.|.
T Consensus 27 CF~C~~C~~~L~~~~-~-~~~~g~~yC~~~cy~~~f~---~~C~~C~ 68 (76)
T 1iml_A 27 CLKCEKCGKTLTSGG-H-AEHEGKPYCNHPCYSAMFG---PKGFGRG 68 (76)
T ss_dssp TCBCTTTCCBCCTTT-E-EEETTEEEETTTHHHHHSS---CCCSSCC
T ss_pred CCCccccCccCCCCc-e-ECcCCeEeeCHHHHHHHhC---ccCCCcC
Confidence 466777776665542 1 1123556666 46655322 2366664
No 125
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=56.31 E-value=4.7 Score=43.02 Aligned_cols=49 Identities=12% Similarity=0.036 Sum_probs=41.2
Q ss_pred CCCCccceecccccCCCceEEeCCC-CccchhhHHHHHhhCCCCCCccccccCC
Q 022509 79 CTSRTCAICLEDYSVGEKLRILPCR-HKFHAFCVDSWLTSWRTFCPVCKRDART 131 (296)
Q Consensus 79 ~~~~~CaICLe~f~~~d~vr~LpCg-H~FH~~CId~WL~~~~~tCPlCR~~i~~ 131 (296)
.+...|+|-++-|++. .++|-| +.|-+.+|++||.. +.+||+=|+++..
T Consensus 889 P~~F~cPIs~~lM~DP---VilpsG~~TydR~~I~~wl~~-~~tdP~Tr~~L~~ 938 (968)
T 3m62_A 889 PDEFLDPLMYTIMKDP---VILPASKMNIDRSTIKAHLLS-DSTDPFNRMPLKL 938 (968)
T ss_dssp CGGGBCTTTCSBCSSE---EECTTTCCEEEHHHHHHHHTT-CCBCTTTCCBCCG
T ss_pred cHHhCCcchhhHHhCC---eEcCCCCEEECHHHHHHHHhc-CCCCCCCCCCCCc
Confidence 4568899999998866 678987 58999999999998 5679999888764
No 126
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=56.00 E-value=1.7 Score=30.56 Aligned_cols=44 Identities=34% Similarity=0.710 Sum_probs=26.1
Q ss_pred CCCccceecccccCCCceEEeC--CC-CccchhhHHHHHhh---CCCCCCcccc
Q 022509 80 TSRTCAICLEDYSVGEKLRILP--CR-HKFHAFCVDSWLTS---WRTFCPVCKR 127 (296)
Q Consensus 80 ~~~~CaICLe~f~~~d~vr~Lp--Cg-H~FH~~CId~WL~~---~~~tCPlCR~ 127 (296)
+...| ||..... ++.+.-=. |. ..||..|+. |.. ++-.||.|+.
T Consensus 9 e~~~C-~C~~~~~-g~mi~CD~cdC~~~wfH~~Cvg--l~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 9 EPTYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp CCEET-TTTEECC-SEEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCCEE-ECCCcCC-CCEEEeCCCCCCCceEehhcCC--CCcCCCCCEECcCccC
Confidence 34566 8987642 32222112 44 579999998 443 2345999964
No 127
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=54.55 E-value=2.2 Score=31.59 Aligned_cols=47 Identities=26% Similarity=0.586 Sum_probs=29.4
Q ss_pred CCccceecccccCCCceEEeCCCCccchhhHHHHHhh---C-CCCCCcccc
Q 022509 81 SRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTS---W-RTFCPVCKR 127 (296)
Q Consensus 81 ~~~CaICLe~f~~~d~vr~LpCgH~FH~~CId~WL~~---~-~~tCPlCR~ 127 (296)
+..|.||...-..++.+.-=.|...||..|++.=|.. + .=.||.|+.
T Consensus 26 ~c~C~vC~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 26 SCSCRVCGGKHEPNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SSSCSSSCCCCCSTTEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCCCcCcCCcCCCCCEEEcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 4578899865333333322238999999999853332 2 235999965
No 128
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=54.29 E-value=2 Score=30.22 Aligned_cols=44 Identities=36% Similarity=0.732 Sum_probs=26.7
Q ss_pred CCCccceecccccCCCceEEeC--CC-CccchhhHHHHHhh---CCCCCCcccc
Q 022509 80 TSRTCAICLEDYSVGEKLRILP--CR-HKFHAFCVDSWLTS---WRTFCPVCKR 127 (296)
Q Consensus 80 ~~~~CaICLe~f~~~d~vr~Lp--Cg-H~FH~~CId~WL~~---~~~tCPlCR~ 127 (296)
+...| ||.+.. .++.+.-=. |. ..||..|+. |.. ++-.||.|++
T Consensus 8 e~~yC-~C~~~~-~g~mi~CD~~~C~~~wfH~~Cvg--l~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 8 EPTYC-LCHQVS-YGEMIGCDNPDCPIEWFHFACVD--LTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp CCEET-TTTEEC-CSEEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCcEE-ECCCCC-CCCeeEeeCCCCCCCCEecccCC--cccCCCCCEECcCccC
Confidence 34566 898764 243222222 54 689999998 333 2345999965
No 129
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=54.05 E-value=7.4 Score=28.31 Aligned_cols=32 Identities=31% Similarity=0.516 Sum_probs=25.9
Q ss_pred CCCCccceecccccCCCceEEeCC-CCccchhhHHHH
Q 022509 79 CTSRTCAICLEDYSVGEKLRILPC-RHKFHAFCVDSW 114 (296)
Q Consensus 79 ~~~~~CaICLe~f~~~d~vr~LpC-gH~FH~~CId~W 114 (296)
.+..-|.||.++ ..++.+.| +-+|+..|.++-
T Consensus 6 ee~pWC~ICneD----AtlrC~gCdgDLYC~rC~rE~ 38 (67)
T 2d8v_A 6 SGLPWCCICNED----ATLRCAGCDGDLYCARCFREG 38 (67)
T ss_dssp CCCSSCTTTCSC----CCEEETTTTSEEECSSHHHHH
T ss_pred cCCCeeEEeCCC----CeEEecCCCCceehHHHHHHH
Confidence 345789999998 45888889 889999997764
No 130
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=53.10 E-value=8.2 Score=28.01 Aligned_cols=41 Identities=32% Similarity=0.556 Sum_probs=29.9
Q ss_pred CCCccceecccccCCCceEEeCCCCccchhhHHHHHhhCCCCCCccccccCC
Q 022509 80 TSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDART 131 (296)
Q Consensus 80 ~~~~CaICLe~f~~~d~vr~LpCgH~FH~~CId~WL~~~~~tCPlCR~~i~~ 131 (296)
....|..|-+.+...+.+. .-+..||.+|+ .|-.|+..|..
T Consensus 14 ~~~~C~~C~~~I~~~e~v~--a~~~~wH~~CF---------~C~~C~~~L~~ 54 (82)
T 2co8_A 14 AGDLCALCGEHLYVLERLC--VNGHFFHRSCF---------RCHTCEATLWP 54 (82)
T ss_dssp SSCBCSSSCCBCCTTTBCC--BTTBCCBTTTC---------BCSSSCCBCCT
T ss_pred CCCCCcccCCCcccceEEE--ECCCeeCCCcC---------EEcCCCCCcCC
Confidence 4578999999987776654 35778999883 37777766654
No 131
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=52.52 E-value=8.5 Score=27.90 Aligned_cols=40 Identities=25% Similarity=0.497 Sum_probs=30.0
Q ss_pred CCCccceecccccCCCceEEeCCCCccchhhHHHHHhhCCCCCCccccccC
Q 022509 80 TSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDAR 130 (296)
Q Consensus 80 ~~~~CaICLe~f~~~d~vr~LpCgH~FH~~CId~WL~~~~~tCPlCR~~i~ 130 (296)
....|.-|-+.+..++.+.. -+..||.+| ..|-.|+..|.
T Consensus 14 ~~~~C~~C~~~I~~~~~v~a--~~~~wH~~C---------F~C~~C~~~L~ 53 (80)
T 2dj7_A 14 GPSHCAGCKEEIKHGQSLLA--LDKQWHVSC---------FKCQTCSVILT 53 (80)
T ss_dssp SCSCCTTTCCCCSSSCCEEE--TTEEECTTT---------CBCSSSCCBCS
T ss_pred CCCCCcCcCCeeCCCeEEEE--CCccccccc---------CCcCcCCCCcC
Confidence 35789999999887776554 477899888 23888887765
No 132
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=52.41 E-value=3.8 Score=36.60 Aligned_cols=48 Identities=29% Similarity=0.663 Sum_probs=26.0
Q ss_pred CCccceecccccCCCceEEeCCCCccchhhHHHHHhh---C-CCCCCccccc
Q 022509 81 SRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTS---W-RTFCPVCKRD 128 (296)
Q Consensus 81 ~~~CaICLe~f~~~d~vr~LpCgH~FH~~CId~WL~~---~-~~tCPlCR~~ 128 (296)
+..|.+|...-..++.+..=.|...||..|++.=|.. + .=.||.|+.+
T Consensus 174 ~c~C~vC~~~~~~~~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~~ 225 (226)
T 3ask_A 174 VCACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 225 (226)
T ss_dssp TTSCSSSCCCCC--CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC--
T ss_pred CCCCcCCCCCCCCCCeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcCc
Confidence 3468888764323333322238899999999854432 2 2359999753
No 133
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=50.36 E-value=4.7 Score=28.56 Aligned_cols=43 Identities=23% Similarity=0.475 Sum_probs=28.2
Q ss_pred CccceecccccCCCceEEeCCCCccchhhHHHHHhhCCCCCCcc
Q 022509 82 RTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVC 125 (296)
Q Consensus 82 ~~CaICLe~f~~~d~vr~LpCgH~FH~~CId~WL~~~~~tCPlC 125 (296)
..|-.|...|......+--.|++.|+.+| |..+-..--+||-|
T Consensus 16 ~~C~~C~~~~~~~~~y~C~~C~~~FC~dC-D~fiHe~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQHVYVCAVCQNVFCVDC-DVFVHDSLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTSEEECCTTTTCCBCHHH-HHTTTTTSCSSSTT
T ss_pred CcccccCcccCCCccEECCccCcCcccch-hHHHHhhccCCcCC
Confidence 56999999986432233334999999999 44433222349988
No 134
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=50.07 E-value=4.3 Score=24.67 Aligned_cols=28 Identities=25% Similarity=0.352 Sum_probs=21.3
Q ss_pred CccceecccccCCCceEEeCCCCccchhhH
Q 022509 82 RTCAICLEDYSVGEKLRILPCRHKFHAFCV 111 (296)
Q Consensus 82 ~~CaICLe~f~~~d~vr~LpCgH~FH~~CI 111 (296)
..|+.|-..+...|++. .=|..||+.|+
T Consensus 4 ~~C~~C~k~Vy~~Ek~~--~~g~~~Hk~CF 31 (31)
T 1zfo_A 4 PNCARCGKIVYPTEKVN--CLDKFWHKACF 31 (31)
T ss_dssp CBCSSSCSBCCGGGCCC--SSSSCCCGGGC
T ss_pred CcCCccCCEEecceeEE--ECCeEecccCC
Confidence 57999998887776554 34788999984
No 135
>1pi7_A VPU protein, U ORF protein; alpha helix, viral protein; NMR {Human immunodeficiency virus 1} SCOP: j.35.1.1 PDB: 1pi8_A 1pje_A 2gof_A 2goh_A 2jpx_A
Probab=49.58 E-value=25 Score=22.45 Aligned_cols=26 Identities=4% Similarity=0.232 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhh
Q 022509 19 ISFISLLAMSAVLATCFFVRRHRIRR 44 (296)
Q Consensus 19 I~fi~Ll~i~~vl~i~~~i~r~r~rr 44 (296)
+++++++.+.+++..+.++..++.++
T Consensus 9 valivalIiaIVVWtiv~ieYrk~~k 34 (36)
T 1pi7_A 9 VALVVAIIIAIVVWSIVIIEGRGGKK 34 (36)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444444444455555554444
No 136
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=49.40 E-value=14 Score=27.38 Aligned_cols=37 Identities=11% Similarity=0.179 Sum_probs=26.4
Q ss_pred CCCCCccceecccccCCCceEEe-CCCCccchhhHHHH
Q 022509 78 NCTSRTCAICLEDYSVGEKLRIL-PCRHKFHAFCVDSW 114 (296)
Q Consensus 78 ~~~~~~CaICLe~f~~~d~vr~L-pCgH~FH~~CId~W 114 (296)
+.+...|.+|...|..-..--.- .||++|+..|....
T Consensus 18 d~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 55 (84)
T 1z2q_A 18 DEDAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRHR 55 (84)
T ss_dssp TTTCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCCE
T ss_pred CCCCCCCcCcCCccccchhcccccCCCcEEChHHhCCe
Confidence 33567899999999765322222 39999999997664
No 137
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=47.64 E-value=9.3 Score=30.05 Aligned_cols=47 Identities=26% Similarity=0.494 Sum_probs=28.9
Q ss_pred CCCCccceecccccCCCceEEe--CCCCccchhhHHHHHhh---CCCCCCccccccC
Q 022509 79 CTSRTCAICLEDYSVGEKLRIL--PCRHKFHAFCVDSWLTS---WRTFCPVCKRDAR 130 (296)
Q Consensus 79 ~~~~~CaICLe~f~~~d~vr~L--pCgH~FH~~CId~WL~~---~~~tCPlCR~~i~ 130 (296)
..+..|.+|.+. ++.+.-= .|-..||..|+. |.. ++=.||.|+-.+-
T Consensus 13 ~~~~~C~~C~~~---G~ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~C~~C 64 (107)
T 4gne_A 13 MHEDYCFQCGDG---GELVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWHQCDEC 64 (107)
T ss_dssp SSCSSCTTTCCC---SEEEECCSTTCCCEECTGGGT--CSSCCSSCCCCGGGBCTTT
T ss_pred CCCCCCCcCCCC---CcEeEECCCCCCcccccccCc--CCcCCCCCEECCCCCCCcC
Confidence 356789999842 3322221 277899999998 443 2234887765443
No 138
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=47.62 E-value=2.4 Score=33.02 Aligned_cols=46 Identities=22% Similarity=0.457 Sum_probs=28.6
Q ss_pred ccceecccccCCCceEEeCCCCccchhhHHHHHhh---CCCCCCccccc
Q 022509 83 TCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTS---WRTFCPVCKRD 128 (296)
Q Consensus 83 ~CaICLe~f~~~d~vr~LpCgH~FH~~CId~WL~~---~~~tCPlCR~~ 128 (296)
.|.||.+.-.+...+.--.|...||..|++.=|+. ..-.||.|+..
T Consensus 56 ~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~c 104 (111)
T 2ysm_A 56 VCQNCKQSGEDSKMLVCDTCDKGYHTFCLQPVMKSVPTNGWKCKNCRIC 104 (111)
T ss_dssp CCTTTCCCSCCTTEEECSSSCCEEEGGGSSSCCSSCCSSCCCCHHHHCC
T ss_pred cccccCccCCCCCeeECCCCCcHHhHHhcCCccccCCCCCcCCcCCcCc
Confidence 57777766433323333338999999999854432 23359999654
No 139
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=47.42 E-value=24 Score=22.60 Aligned_cols=25 Identities=28% Similarity=0.304 Sum_probs=12.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHH
Q 022509 14 WSIMAISFISLLAMSAVLATCFFVR 38 (296)
Q Consensus 14 w~iliI~fi~Ll~i~~vl~i~~~i~ 38 (296)
..+..|++..++.++++..+.+++.
T Consensus 11 GaIAGiVvG~v~gv~li~~l~~~~~ 35 (38)
T 2k1k_A 11 GEIVAVIFGLLLGAALLLGILVFRS 35 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CceeeeehHHHHHHHHHHHHHHHHe
Confidence 4444555555544444444444443
No 140
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=47.35 E-value=10 Score=28.54 Aligned_cols=52 Identities=15% Similarity=0.394 Sum_probs=33.2
Q ss_pred CCCccceecccccCCCceE-EeCCCCccchhhHHHHHhh-----CCCCCCccccccCC
Q 022509 80 TSRTCAICLEDYSVGEKLR-ILPCRHKFHAFCVDSWLTS-----WRTFCPVCKRDART 131 (296)
Q Consensus 80 ~~~~CaICLe~f~~~d~vr-~LpCgH~FH~~CId~WL~~-----~~~tCPlCR~~i~~ 131 (296)
+...|.+|...|..-..-- .-.||++|+..|...++.. ....|-.|-..+..
T Consensus 19 ~~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~~~l~~~~~~~RVC~~C~~~l~~ 76 (90)
T 3t7l_A 19 EAPNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRKCKLQYLEKEARVCVVCYETISK 76 (90)
T ss_dssp GCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEEEEETTTTEEEEECHHHHHHHHH
T ss_pred cCCcCcCCCCcccchhhCccccCCCCEECCcccCCeeecCCCCCCCeECHHHHHHHHH
Confidence 3578999999997643222 2249999999998765421 11227777655543
No 141
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=46.43 E-value=2.9 Score=30.26 Aligned_cols=44 Identities=30% Similarity=0.715 Sum_probs=26.5
Q ss_pred ccceecccccCCCceEEe-CCCCccchhhHHHHHhh---C-CCCCCcccc
Q 022509 83 TCAICLEDYSVGEKLRIL-PCRHKFHAFCVDSWLTS---W-RTFCPVCKR 127 (296)
Q Consensus 83 ~CaICLe~f~~~d~vr~L-pCgH~FH~~CId~WL~~---~-~~tCPlCR~ 127 (296)
.|.||...-..+ .+..- .|...||..|++.=|.. + .=.||.|+.
T Consensus 20 ~C~~C~~~~~~~-~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 68 (70)
T 3asl_A 20 ACHLCGGRQDPD-KQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 68 (70)
T ss_dssp SBTTTCCCSCGG-GEEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSC
T ss_pred CCcCCCCcCCCC-CEEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccC
Confidence 566777542222 22222 38899999999854332 2 335999975
No 142
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=46.17 E-value=17 Score=25.09 Aligned_cols=41 Identities=22% Similarity=0.539 Sum_probs=27.3
Q ss_pred CCccceecccccCCCceEEeCCCCccchhhHHHHHhhCCCCCCccccccCC
Q 022509 81 SRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDART 131 (296)
Q Consensus 81 ~~~CaICLe~f~~~d~vr~LpCgH~FH~~CId~WL~~~~~tCPlCR~~i~~ 131 (296)
...|..|-+.+..++.+ +..-+..||.+|+ .|-.|+..+..
T Consensus 5 ~~~C~~C~~~I~~~~~~-~~a~~~~~H~~CF---------~C~~C~~~L~~ 45 (72)
T 1wyh_A 5 SSGCSACGETVMPGSRK-LEYGGQTWHEHCF---------LCSGCEQPLGS 45 (72)
T ss_dssp CCBCSSSCCBCCSSSCE-ECSTTCCEETTTC---------BCTTTCCBTTT
T ss_pred CCCCccCCCccccCccE-EEECccccCcccC---------eECCCCCcCCC
Confidence 46788888888765432 2335778888873 37777776654
No 143
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=44.66 E-value=14 Score=27.23 Aligned_cols=35 Identities=26% Similarity=0.433 Sum_probs=24.3
Q ss_pred CCCCccceecccccCCCceEE-eCCCCccchhhHHH
Q 022509 79 CTSRTCAICLEDYSVGEKLRI-LPCRHKFHAFCVDS 113 (296)
Q Consensus 79 ~~~~~CaICLe~f~~~d~vr~-LpCgH~FH~~CId~ 113 (296)
.+...|.+|..+|..-..--- -.||.+|+..|...
T Consensus 12 ~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 47 (84)
T 1x4u_A 12 NNFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCSF 47 (84)
T ss_dssp CCCSSCSSSCCCCCSSSCCEECSSSCCEECTTTSCE
T ss_pred CCCCcCcCcCCccccchhhhhhcCCCcEEChhhcCC
Confidence 345789999999965432111 23999999999544
No 144
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=43.54 E-value=21 Score=24.91 Aligned_cols=42 Identities=24% Similarity=0.524 Sum_probs=29.3
Q ss_pred CCCccceecccccCCCceEEeCCCCccchhhHHHHHhhCCCCCCccccccCC
Q 022509 80 TSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDART 131 (296)
Q Consensus 80 ~~~~CaICLe~f~~~d~vr~LpCgH~FH~~CId~WL~~~~~tCPlCR~~i~~ 131 (296)
....|+-|-+.+...+.+.. .-+..||.+|+ .|-.|+..+..
T Consensus 10 ~~~~C~~C~~~I~~~~~~~~-a~~~~~H~~CF---------~C~~C~~~L~~ 51 (77)
T 1g47_A 10 ASATCERCKGGFAPAEKIVN-SNGELYHEQCF---------VCAQCFQQFPE 51 (77)
T ss_dssp CCCBCSSSCCBCCSTTTCEE-ETTEEECTTTC---------CCTTTCCCCGG
T ss_pred CCCCchhcCCccCCCceEEE-eCccEeccccC---------eECCCCCCCCC
Confidence 45789999999886555432 24778998883 37777776654
No 145
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=43.25 E-value=25 Score=24.21 Aligned_cols=40 Identities=28% Similarity=0.540 Sum_probs=21.4
Q ss_pred CCccceecccccCCCceEEeCCCCccchhhHHHHHhhCCCCCCccccccC
Q 022509 81 SRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDAR 130 (296)
Q Consensus 81 ~~~CaICLe~f~~~d~vr~LpCgH~FH~~CId~WL~~~~~tCPlCR~~i~ 130 (296)
...|..|-+.+...+.+ +..=+..||.+|+ .|-.|+..+.
T Consensus 5 ~~~C~~C~~~I~~~~~~-~~a~~~~~H~~CF---------~C~~C~~~L~ 44 (72)
T 1x61_A 5 SSGCGGCGEDVVGDGAG-VVALDRVFHVGCF---------VCSTCRAQLR 44 (72)
T ss_dssp CCCCSSSCSCCCSSSCC-EECSSSEECTTTC---------BCSSSCCBCT
T ss_pred CCCCccCCCccCCCceE-EEECCCeEcccCC---------cccccCCcCC
Confidence 35677777666543322 1223566776662 2666666553
No 146
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=42.92 E-value=3.8 Score=29.04 Aligned_cols=44 Identities=32% Similarity=0.665 Sum_probs=26.3
Q ss_pred CCCccceecccccCCCceEEeC--CC-CccchhhHHHHHhh---CCCCCCcccc
Q 022509 80 TSRTCAICLEDYSVGEKLRILP--CR-HKFHAFCVDSWLTS---WRTFCPVCKR 127 (296)
Q Consensus 80 ~~~~CaICLe~f~~~d~vr~Lp--Cg-H~FH~~CId~WL~~---~~~tCPlCR~ 127 (296)
+...| ||.... .++.+.-=. |. ..||..|+. |.. .+-.||.|+.
T Consensus 10 e~~yC-~C~~~~-~g~MI~CD~c~C~~~WfH~~Cvg--l~~~p~~~w~Cp~C~~ 59 (62)
T 2g6q_A 10 EPTYC-LCNQVS-YGEMIGCDNEQCPIEWFHFSCVS--LTYKPKGKWYCPKCRG 59 (62)
T ss_dssp CCEET-TTTEEC-CSEEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHT
T ss_pred CCcEE-ECCCCC-CCCeeeeeCCCCCcccEecccCC--cCcCCCCCEECcCccc
Confidence 34667 898863 243222112 44 789999997 332 2345999965
No 147
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=41.61 E-value=25 Score=24.93 Aligned_cols=41 Identities=24% Similarity=0.429 Sum_probs=29.5
Q ss_pred CCccceecccccCCCceEEeCCCCccchhhHHHHHhhCCCCCCccccccCC
Q 022509 81 SRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDART 131 (296)
Q Consensus 81 ~~~CaICLe~f~~~d~vr~LpCgH~FH~~CId~WL~~~~~tCPlCR~~i~~ 131 (296)
...|..|-+.+..++.+. ..=+..||.+|+ .|-.|+..+..
T Consensus 15 ~~~C~~C~~~I~~~~~~~-~a~~~~~H~~CF---------~C~~C~~~L~~ 55 (82)
T 1x63_A 15 SPKCKGCFKAIVAGDQNV-EYKGTVWHKDCF---------TCSNCKQVIGT 55 (82)
T ss_dssp SCBCSSSCCBCCSSSCEE-ECSSCEEETTTC---------CCSSSCCCCTT
T ss_pred CCcCccCCcccccCceEE-EECccccccccC---------chhhCCCccCC
Confidence 468999999988766532 235788998883 38888777754
No 148
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=40.63 E-value=29 Score=25.18 Aligned_cols=40 Identities=15% Similarity=0.309 Sum_probs=28.6
Q ss_pred CCCccceecccccCCCceEEeCCCCccchhhHHHHHhhCCCCCCccccccCC
Q 022509 80 TSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDART 131 (296)
Q Consensus 80 ~~~~CaICLe~f~~~d~vr~LpCgH~FH~~CId~WL~~~~~tCPlCR~~i~~ 131 (296)
....|.-|-+.+.. +. +..-+..||.+|+ .|-.|+..|..
T Consensus 24 ~~~~C~~C~~~I~~-~~--~~a~~~~~H~~CF---------~C~~C~~~L~~ 63 (89)
T 1x64_A 24 RMPLCDKCGSGIVG-AV--VKARDKYRHPECF---------VCADCNLNLKQ 63 (89)
T ss_dssp SCCBCTTTCCBCCS-CC--EESSSCEECTTTC---------CCSSSCCCTTT
T ss_pred cCCCcccCCCEecc-cE--EEECCceECccCC---------EecCCCCCCCC
Confidence 45789999998875 32 3346788999883 38888777754
No 149
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=40.33 E-value=13 Score=29.70 Aligned_cols=35 Identities=23% Similarity=0.420 Sum_probs=24.5
Q ss_pred CCCccceecccccCCCceEE-eCCCCccchhhHHHH
Q 022509 80 TSRTCAICLEDYSVGEKLRI-LPCRHKFHAFCVDSW 114 (296)
Q Consensus 80 ~~~~CaICLe~f~~~d~vr~-LpCgH~FH~~CId~W 114 (296)
+...|.+|...|..-..--. -.||++|+..|....
T Consensus 68 ~~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~~ 103 (125)
T 1joc_A 68 EVQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAKN 103 (125)
T ss_dssp GCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEE
T ss_pred CCCCCcCcCCccccccccccCCCCCeEEChHHhCCc
Confidence 35789999999975432111 139999999996543
No 150
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=40.04 E-value=16 Score=26.20 Aligned_cols=40 Identities=15% Similarity=0.328 Sum_probs=27.4
Q ss_pred CCCccceecccccCCCceEEeCCCCccchhhHHHHHhhCCCCCCccccccCC
Q 022509 80 TSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDART 131 (296)
Q Consensus 80 ~~~~CaICLe~f~~~d~vr~LpCgH~FH~~CId~WL~~~~~tCPlCR~~i~~ 131 (296)
....|.-|-+.+. ++.+ ..-+..||.+|+ .|-.|+..|..
T Consensus 14 ~~~~C~~C~~~I~-~~~v--~a~~~~~H~~CF---------~C~~C~~~L~~ 53 (79)
T 2cor_A 14 GKYICQKCHAIID-EQPL--IFKNDPYHPDHF---------NCANCGKELTA 53 (79)
T ss_dssp CCCBCTTTCCBCC-SCCC--CCSSSCCCTTTS---------BCSSSCCBCCT
T ss_pred CCCCCccCCCEec-ceEE--EECcceeCCCCC---------EeCCCCCccCC
Confidence 4578999998887 3333 235778888873 37778777664
No 151
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=40.02 E-value=18 Score=26.04 Aligned_cols=32 Identities=19% Similarity=0.388 Sum_probs=23.0
Q ss_pred CccceecccccCCCceEE-eCCCCccchhhHHH
Q 022509 82 RTCAICLEDYSVGEKLRI-LPCRHKFHAFCVDS 113 (296)
Q Consensus 82 ~~CaICLe~f~~~d~vr~-LpCgH~FH~~CId~ 113 (296)
..|.+|...|..-..--- -.||.+|+..|...
T Consensus 12 ~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~~ 44 (73)
T 1vfy_A 12 DACMICSKKFSLLNRKHHCRSCGGVFCQEHSSN 44 (73)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEECGGGSCE
T ss_pred CcccCCCCccCCccccccCCCCCEEEcccccCC
Confidence 589999999976432111 13999999999754
No 152
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=39.43 E-value=2.1 Score=33.74 Aligned_cols=48 Identities=17% Similarity=0.416 Sum_probs=30.4
Q ss_pred ccceecccccCCCceEEeCCCCccchhhHHHHHhh---CCCCCCccccccC
Q 022509 83 TCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTS---WRTFCPVCKRDAR 130 (296)
Q Consensus 83 ~CaICLe~f~~~d~vr~LpCgH~FH~~CId~WL~~---~~~tCPlCR~~i~ 130 (296)
.|.||...-..++.+.--.|...||..|++.=|.. +.=.||.|+..+.
T Consensus 60 ~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~~~~ 110 (114)
T 2kwj_A 60 SCILCGTSENDDQLLFCDDCDRGYHMYCLNPPVAEPPEGSWSCHLCWELLK 110 (114)
T ss_dssp CCTTTTCCTTTTTEEECSSSCCEEETTTSSSCCSSCCSSCCCCHHHHHHHH
T ss_pred ccCcccccCCCCceEEcCCCCccccccccCCCccCCCCCCeECccccchhh
Confidence 68888776444433333348999999999853332 2234999976543
No 153
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=39.33 E-value=21 Score=34.01 Aligned_cols=46 Identities=24% Similarity=0.322 Sum_probs=29.8
Q ss_pred CCccceecccccCCCceEEeCCCCccchhhHHHHHh----hCCCCCCcccccc
Q 022509 81 SRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLT----SWRTFCPVCKRDA 129 (296)
Q Consensus 81 ~~~CaICLe~f~~~d~vr~LpCgH~FH~~CId~WL~----~~~~tCPlCR~~i 129 (296)
...|+|=+..++ ..+|-..|.|.-|.+ ++.||+ ...-.||+|.+.+
T Consensus 249 SL~CPlS~~ri~--~PvRg~~C~HlQCFD-l~sfL~~~~~~~~W~CPIC~k~~ 298 (371)
T 3i2d_A 249 SLQCPISYTRMK--YPSKSINCKHLQCFD-ALWFLHSQLQIPTWQCPVCQIDI 298 (371)
T ss_dssp ESBCTTTSSBCS--SEEEETTCCSSCCEE-HHHHHHHHHHSCCCBCTTTCCBC
T ss_pred eecCCCcccccc--ccCcCCcCCCcceEC-HHHHHHHhhcCCceeCCCCCccc
Confidence 368887777765 447888899984333 234443 2234599998765
No 154
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=39.27 E-value=12 Score=31.55 Aligned_cols=45 Identities=22% Similarity=0.418 Sum_probs=30.1
Q ss_pred CCCCCccceecccccCCCceEEe---CCCCccchhhHHHHHhh---------CCCCCCccc
Q 022509 78 NCTSRTCAICLEDYSVGEKLRIL---PCRHKFHAFCVDSWLTS---------WRTFCPVCK 126 (296)
Q Consensus 78 ~~~~~~CaICLe~f~~~d~vr~L---pCgH~FH~~CId~WL~~---------~~~tCPlCR 126 (296)
+..+..|.||-+. + ++..- .|...|+.+||+.++.. .+=.|=+|.
T Consensus 76 DG~~~yC~wC~~G---g-~l~~Cdn~~C~r~FC~~CI~~nvG~~~~~~i~~~d~W~Cy~C~ 132 (159)
T 3a1b_A 76 DGYQSYCTICCGG---R-EVLMCGNNNCCRCFCVECVDLLVGPGAAQAAIKEDPWNCYMCG 132 (159)
T ss_dssp TSSBSSCTTTSCC---S-EEEECSSTTTCCEEEHHHHHHHTCTTHHHHHHTSSSCCCTTTC
T ss_pred CCCcceeeEecCC---C-eEEeeCCCCCCCchhHHHHHHhcCHhHHHHHhccCCCEEEecC
Confidence 4456889999864 2 33322 27789999999998754 122387775
No 155
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=38.94 E-value=11 Score=30.70 Aligned_cols=33 Identities=15% Similarity=0.383 Sum_probs=24.2
Q ss_pred CCCccceecccccC--CCceEEeCCCCccchhhHH
Q 022509 80 TSRTCAICLEDYSV--GEKLRILPCRHKFHAFCVD 112 (296)
Q Consensus 80 ~~~~CaICLe~f~~--~d~vr~LpCgH~FH~~CId 112 (296)
+...|.+|...|.- +.......|.|.+|..|-.
T Consensus 54 ~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~ 88 (134)
T 1zbd_B 54 GVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGV 88 (134)
T ss_dssp SSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEE
T ss_pred CCccccccCCCcccccCCCCCCCCCCcccccccCC
Confidence 56899999999943 2334444599999999844
No 156
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=38.85 E-value=4 Score=27.56 Aligned_cols=42 Identities=14% Similarity=0.393 Sum_probs=25.4
Q ss_pred eecccccCCCceEEeCCCCccchhhHHHHHh--hCCCCCCcccc
Q 022509 86 ICLEDYSVGEKLRILPCRHKFHAFCVDSWLT--SWRTFCPVCKR 127 (296)
Q Consensus 86 ICLe~f~~~d~vr~LpCgH~FH~~CId~WL~--~~~~tCPlCR~ 127 (296)
||......+..|.--.|+--||..|+..--. ..+-.||.|+.
T Consensus 8 ~C~~~~~~~~MI~Cd~C~~W~H~~Cvgi~~~~~~~~~~C~~C~~ 51 (52)
T 3o7a_A 8 FCMKPFAGRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 51 (52)
T ss_dssp TTCCBCTTCCEEECTTTCCEEETTTTTCCGGGCCSSCCCHHHHT
T ss_pred EeCCcCCCCCEEEcCCCCccccccccCCCcccCCCcEECcCCCC
Confidence 6766654223333334888899999864222 12445999975
No 157
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=38.84 E-value=22 Score=24.49 Aligned_cols=40 Identities=23% Similarity=0.493 Sum_probs=25.1
Q ss_pred CCccceecccccCCCceEEeCCCCccchhhHHHHHhhCCCCCCccccccCCC
Q 022509 81 SRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDARTS 132 (296)
Q Consensus 81 ~~~CaICLe~f~~~d~vr~LpCgH~FH~~CId~WL~~~~~tCPlCR~~i~~~ 132 (296)
...|..|-+.+. ++.+. .-+..||.+|+ .|-.|+..|...
T Consensus 5 ~~~C~~C~~~I~-~~~~~--a~~~~~H~~CF---------~C~~C~~~L~~~ 44 (70)
T 2d8x_A 5 SSGCHQCGEFII-GRVIK--AMNNSWHPECF---------RCDLCQEVLADI 44 (70)
T ss_dssp SSBCSSSCCBCC-SCCEE--ETTEEECTTTS---------BCSSSCCBCSSS
T ss_pred CCcCccCCCEec-ceEEE--ECcccccccCC---------EeCCCCCcCCCC
Confidence 467888888776 33332 24677888773 377777666543
No 158
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=38.46 E-value=29 Score=25.24 Aligned_cols=40 Identities=23% Similarity=0.389 Sum_probs=28.8
Q ss_pred CCCccceecccccCCCceEEeCCCCccchhhHHHHHhhCCCCCCccccccCC
Q 022509 80 TSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDART 131 (296)
Q Consensus 80 ~~~~CaICLe~f~~~d~vr~LpCgH~FH~~CId~WL~~~~~tCPlCR~~i~~ 131 (296)
....|..|-+.+. ++.+ ..-+..||.+|+ .|-.|+..|..
T Consensus 24 ~~~~C~~C~~~I~-~~~v--~a~~~~~H~~CF---------~C~~C~~~L~~ 63 (90)
T 2dar_A 24 RTPMCAHCNQVIR-GPFL--VALGKSWHPEEF---------NCAHCKNTMAY 63 (90)
T ss_dssp CCCBBSSSCCBCC-SCEE--EETTEEECTTTC---------BCSSSCCBCSS
T ss_pred CCCCCccCCCEec-ceEE--EECCccccccCC---------ccCCCCCCCCC
Confidence 4578999999885 4333 345888998883 38888877764
No 159
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=38.35 E-value=7.9 Score=28.07 Aligned_cols=47 Identities=26% Similarity=0.493 Sum_probs=29.6
Q ss_pred CccceecccccCCCceEEe-CCCCccchhhHHHHHh----hCCCCCCcccccc
Q 022509 82 RTCAICLEDYSVGEKLRIL-PCRHKFHAFCVDSWLT----SWRTFCPVCKRDA 129 (296)
Q Consensus 82 ~~CaICLe~f~~~d~vr~L-pCgH~FH~~CId~WL~----~~~~tCPlCR~~i 129 (296)
..| ||...+..++.+..- .|.--||..|+..--. ...-.||.|+...
T Consensus 11 ~yC-iC~~~~~~~~~MI~Cd~C~~WfH~~Cvg~~~~~~~~~~~~~C~~C~~~~ 62 (75)
T 3kqi_A 11 VYC-VCRLPYDVTRFMIECDACKDWFHGSCVGVEEEEAPDIDIYHCPNCEKTH 62 (75)
T ss_dssp EET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCTTTGGGBSSCCCHHHHHHH
T ss_pred eEE-ECCCcCCCCCCEEEcCCCCCCEecccccccccccCCCCEEECCCCcccC
Confidence 444 898776544433333 3898899999954321 1235599997653
No 160
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=37.59 E-value=29 Score=23.82 Aligned_cols=41 Identities=22% Similarity=0.447 Sum_probs=26.7
Q ss_pred CCccceecccccCCCceEEeCCCCccchhhHHHHHhhCCCCCCccccccCC
Q 022509 81 SRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDART 131 (296)
Q Consensus 81 ~~~CaICLe~f~~~d~vr~LpCgH~FH~~CId~WL~~~~~tCPlCR~~i~~ 131 (296)
...|..|-+.+...+.+.. .=+..||.+|+ .|-.|+..+..
T Consensus 5 ~~~C~~C~~~I~~~~~~~~-a~~~~~H~~CF---------~C~~C~~~L~~ 45 (72)
T 1x4k_A 5 SSGCQECKKTIMPGTRKME-YKGSSWHETCF---------ICHRCQQPIGT 45 (72)
T ss_dssp CCCBSSSCCCCCSSSCEEE-ETTEEEETTTT---------CCSSSCCCCCS
T ss_pred CCCCccCCCcccCCceEEE-ECcCeecccCC---------cccccCCccCC
Confidence 3578888888876643322 24677888773 37777766654
No 161
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=37.52 E-value=6 Score=39.00 Aligned_cols=47 Identities=26% Similarity=0.462 Sum_probs=29.8
Q ss_pred CCccceecccccCCCceEEe-CCCCccchhhHHHHHhh----CCCCCCccccc
Q 022509 81 SRTCAICLEDYSVGEKLRIL-PCRHKFHAFCVDSWLTS----WRTFCPVCKRD 128 (296)
Q Consensus 81 ~~~CaICLe~f~~~d~vr~L-pCgH~FH~~CId~WL~~----~~~tCPlCR~~ 128 (296)
...| ||...+..+..+..- .|.--||..|+..--.. .+-.||.|+..
T Consensus 37 ~~yC-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~ 88 (488)
T 3kv5_D 37 PVYC-VCRQPYDVNRFMIECDICKDWFHGSCVGVEEHHAVDIDLYHCPNCAVL 88 (488)
T ss_dssp CEET-TTTEECCTTSCEEEBTTTCCEEEHHHHTCCGGGGGGEEEBCCHHHHHH
T ss_pred CeEE-eCCCcCCCCCCeEEccCCCCceeeeecCcCcccccCCCEEECCCCcCC
Confidence 4456 998887544444333 38988999998532211 23459999754
No 162
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=37.46 E-value=20 Score=26.88 Aligned_cols=53 Identities=15% Similarity=0.246 Sum_probs=33.7
Q ss_pred CCCccceecccccCCCceEE-eCCCCccchhhHHHHHhh------CCCCCCccccccCCC
Q 022509 80 TSRTCAICLEDYSVGEKLRI-LPCRHKFHAFCVDSWLTS------WRTFCPVCKRDARTS 132 (296)
Q Consensus 80 ~~~~CaICLe~f~~~d~vr~-LpCgH~FH~~CId~WL~~------~~~tCPlCR~~i~~~ 132 (296)
+...|.+|...|..-..--- -.||.+|+..|....+.. ....|-.|-..+...
T Consensus 8 ~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~~~lp~~g~~~~RVC~~C~~~l~~~ 67 (88)
T 1wfk_A 8 MESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSFSALVPRAGNTQQKVCKQCHTILTRG 67 (88)
T ss_dssp CCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCEEEEETTTTSEEEEECHHHHHHHHHC
T ss_pred cCCCCcCcCCcccCccccccCCCCCCEEChhHcCCceeccccCCCcCEECHHHHHHHHhc
Confidence 34689999999976532211 239999999997654321 012388886665543
No 163
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=37.43 E-value=13 Score=26.52 Aligned_cols=40 Identities=23% Similarity=0.611 Sum_probs=25.4
Q ss_pred CCccceecccccCCCceEEeCCCCccchhhHHHHHhhCCCCCCccccccCC
Q 022509 81 SRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDART 131 (296)
Q Consensus 81 ~~~CaICLe~f~~~d~vr~LpCgH~FH~~CId~WL~~~~~tCPlCR~~i~~ 131 (296)
...|..|-+.+..++.+. .-+..||.+|+ .|-.|+..+..
T Consensus 7 ~~~C~~C~~~I~~~~~~~--a~~~~~H~~CF---------~C~~C~~~L~~ 46 (81)
T 1a7i_A 7 GNKCGACGRTVYHAEEVQ--CDGRSFHRCCF---------LCMVCRKNLDS 46 (81)
T ss_dssp -CBCSSSCCBCSSTTEEE--ETTEEEESSSE---------ECSSSCCEECS
T ss_pred CCcCcCcCccccCceeEE--eCCcccccccC---------ccCCCCCCCCC
Confidence 467888888877666443 35677887773 26666666543
No 164
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=36.69 E-value=26 Score=25.57 Aligned_cols=40 Identities=28% Similarity=0.561 Sum_probs=27.7
Q ss_pred CCccceecccccCCCceEEeCCCCccchhhHHHHHhhCCCCCCccccccCC
Q 022509 81 SRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDART 131 (296)
Q Consensus 81 ~~~CaICLe~f~~~d~vr~LpCgH~FH~~CId~WL~~~~~tCPlCR~~i~~ 131 (296)
...|.-|-+.+...+.+ ..-+..||.+|+ .|-.|...|..
T Consensus 15 ~~~C~~C~~~I~~~~~v--~a~~~~~H~~CF---------~C~~C~~~L~~ 54 (91)
T 2d8y_A 15 RETCVECQKTVYPMERL--LANQQVFHISCF---------RCSYCNNKLSL 54 (91)
T ss_dssp SCBCTTTCCBCCTTSEE--ECSSSEEETTTC---------BCTTTCCBCCT
T ss_pred CCcCccCCCccCCceeE--EECCCEECCCCC---------eeCCCCCCCCC
Confidence 46899999988776644 356778888883 26666665554
No 165
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=35.91 E-value=15 Score=25.12 Aligned_cols=43 Identities=23% Similarity=0.515 Sum_probs=30.9
Q ss_pred CCCccceecccccCCCceEEeCCCCccchhhHHHHHhhCCCCCCccccccCCC
Q 022509 80 TSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDARTS 132 (296)
Q Consensus 80 ~~~~CaICLe~f~~~d~vr~LpCgH~FH~~CId~WL~~~~~tCPlCR~~i~~~ 132 (296)
....|.-|-+.+..++.+.. .=+..||..|+ .|-.|...+...
T Consensus 10 ~~~~C~~C~~~i~~~e~~~~-~~~~~~H~~CF---------~C~~C~~~L~~~ 52 (72)
T 3f6q_B 10 ASATCERCKGGFAPAEKIVN-SNGELYHEQCF---------VCAQCFQQFPEG 52 (72)
T ss_dssp TTCBCTTTCCBCCTTCEEEE-ETTEEEETTTS---------SCTTTCCCCGGG
T ss_pred CCccchhcCccccCCceEEE-eCcCeeCcCCC---------cccCCCCCCCCC
Confidence 35789999999887765432 34678998884 378887776543
No 166
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=35.91 E-value=16 Score=31.56 Aligned_cols=35 Identities=17% Similarity=0.466 Sum_probs=24.7
Q ss_pred CCCccceecccccCCCceEEe-CCCCccchhhHHHH
Q 022509 80 TSRTCAICLEDYSVGEKLRIL-PCRHKFHAFCVDSW 114 (296)
Q Consensus 80 ~~~~CaICLe~f~~~d~vr~L-pCgH~FH~~CId~W 114 (296)
++..|.+|...|..-..---- .||++||..|....
T Consensus 160 ~~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~~ 195 (220)
T 1dvp_A 160 DGRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAKQ 195 (220)
T ss_dssp CCSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCEE
T ss_pred CCCccCCCCCccCCcccccccCCcCCEEChHHhCCe
Confidence 358999999999754321111 39999999997653
No 167
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=35.78 E-value=13 Score=30.93 Aligned_cols=32 Identities=25% Similarity=0.571 Sum_probs=24.4
Q ss_pred CCCccceecccccC--CCceEEeCCCCccchhhH
Q 022509 80 TSRTCAICLEDYSV--GEKLRILPCRHKFHAFCV 111 (296)
Q Consensus 80 ~~~~CaICLe~f~~--~d~vr~LpCgH~FH~~CI 111 (296)
++..|.+|...|.- +.......|+|.+|..|-
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~ 100 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFVCKSCS 100 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGE
T ss_pred CCccchhhcCccccccCCCCcCCCCCchhhcccc
Confidence 46899999998754 334455559999999996
No 168
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=35.68 E-value=26 Score=33.25 Aligned_cols=46 Identities=22% Similarity=0.364 Sum_probs=29.5
Q ss_pred CccceecccccCCCceEEeCCCCccchhhHHHHHh---h-CCCCCCccccccC
Q 022509 82 RTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLT---S-WRTFCPVCKRDAR 130 (296)
Q Consensus 82 ~~CaICLe~f~~~d~vr~LpCgH~FH~~CId~WL~---~-~~~tCPlCR~~i~ 130 (296)
..|+|=+..++ ..+|-..|.|.=|.+ ++.||+ + ..-.||+|.+.+.
T Consensus 216 L~CPlS~~ri~--~P~Rg~~C~HlqCFD-l~sfL~~~~~~~~W~CPiC~k~~~ 265 (360)
T 4fo9_A 216 LMCPLGKMRLT--IPCRAVTCTHLQCFD-AALYLQMNEKKPTWICPVCDKKAA 265 (360)
T ss_dssp SBCTTTCSBCS--SEEEETTCCCCCCEE-HHHHHHHHHHSCCCBCTTTCSBCC
T ss_pred eeCCCccceec--cCCcCCCCCCCccCC-HHHHHHHHhhCCCeECCCCCcccC
Confidence 57887777765 347888899983322 334443 2 2345999988764
No 169
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=35.61 E-value=17 Score=34.79 Aligned_cols=47 Identities=23% Similarity=0.405 Sum_probs=31.7
Q ss_pred CCCCCccceecccccCCCceEEe--CCCCccchhhHHHHHhh---------CCCCCCcccc
Q 022509 78 NCTSRTCAICLEDYSVGEKLRIL--PCRHKFHAFCVDSWLTS---------WRTFCPVCKR 127 (296)
Q Consensus 78 ~~~~~~CaICLe~f~~~d~vr~L--pCgH~FH~~CId~WL~~---------~~~tCPlCR~ 127 (296)
+..+..|.||-+. ++-+..= .|...||.+||+.++.. .+=.|=+|.-
T Consensus 90 DG~~~yCr~C~~G---g~l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p 147 (386)
T 2pv0_B 90 DGYQSYCSICCSG---ETLLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLP 147 (386)
T ss_dssp SSSBCSCTTTCCC---SSCEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSS
T ss_pred CCCcccceEcCCC---CeEEEeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceEEEcCC
Confidence 3456889999875 3333333 48899999999999832 2234888853
No 170
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=34.89 E-value=18 Score=31.70 Aligned_cols=36 Identities=17% Similarity=0.427 Sum_probs=25.6
Q ss_pred CCCccceecccccCCCceEE-eCCCCccchhhHHHHH
Q 022509 80 TSRTCAICLEDYSVGEKLRI-LPCRHKFHAFCVDSWL 115 (296)
Q Consensus 80 ~~~~CaICLe~f~~~d~vr~-LpCgH~FH~~CId~WL 115 (296)
++..|.+|...|..-..--. -.||++||..|-..++
T Consensus 163 ~~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~~~ 199 (226)
T 3zyq_A 163 DAEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSKYS 199 (226)
T ss_dssp CCSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCEEE
T ss_pred cCCCCcCcCCCCCccccccccCCCcCEeChhhcCCcc
Confidence 35799999999976432222 2399999999976543
No 171
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=34.66 E-value=17 Score=29.13 Aligned_cols=48 Identities=19% Similarity=0.505 Sum_probs=28.9
Q ss_pred CCCccceecccccCCCceEE-eCCCCccchhhHHHHHhhCCCCCCccccc
Q 022509 80 TSRTCAICLEDYSVGEKLRI-LPCRHKFHAFCVDSWLTSWRTFCPVCKRD 128 (296)
Q Consensus 80 ~~~~CaICLe~f~~~d~vr~-LpCgH~FH~~CId~WL~~~~~tCPlCR~~ 128 (296)
....|..|-..|..-..--. -.||.+|+..|....+.. ...|-.|-..
T Consensus 18 ~~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~-vRVC~~C~~~ 66 (120)
T 1y02_A 18 LEPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNG-PRLCLLCQRF 66 (120)
T ss_dssp --CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC-----CCEEHHHHHH
T ss_pred ccCcccCcCCccccccccccCCCCCCeeCHHHhCCCCCC-ceECHHHHHH
Confidence 34689999999975422222 249999999997765543 2337777543
No 172
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=34.53 E-value=7.1 Score=29.86 Aligned_cols=44 Identities=25% Similarity=0.424 Sum_probs=26.1
Q ss_pred CCCccceecccccCCCceEEeCCC---CccchhhHHHHHhh---CCCCCCc-ccc
Q 022509 80 TSRTCAICLEDYSVGEKLRILPCR---HKFHAFCVDSWLTS---WRTFCPV-CKR 127 (296)
Q Consensus 80 ~~~~CaICLe~f~~~d~vr~LpCg---H~FH~~CId~WL~~---~~~tCPl-CR~ 127 (296)
+...| ||..... ++.|..=.|. -.||..|+. |.. .+-.||. |+.
T Consensus 25 ~~~yC-iC~~~~~-g~MI~CD~c~C~~eWfH~~CVg--l~~~p~~~W~Cp~cC~~ 75 (90)
T 2jmi_A 25 EEVYC-FCRNVSY-GPMVACDNPACPFEWFHYGCVG--LKQAPKGKWYCSKDCKE 75 (90)
T ss_dssp CSCCS-TTTCCCS-SSEECCCSSSCSCSCEETTTSS--CSSCTTSCCCSSHHHHH
T ss_pred CCcEE-EeCCCCC-CCEEEecCCCCccccCcCccCC--CCcCCCCCccCChhhcc
Confidence 45677 9987532 3322211244 679999986 232 2345999 964
No 173
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=34.08 E-value=30 Score=23.89 Aligned_cols=40 Identities=30% Similarity=0.463 Sum_probs=27.6
Q ss_pred CCccceecccccC--CCceEEeCCCCccchhhHHHHHhhCCCCCCccccccC
Q 022509 81 SRTCAICLEDYSV--GEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDAR 130 (296)
Q Consensus 81 ~~~CaICLe~f~~--~d~vr~LpCgH~FH~~CId~WL~~~~~tCPlCR~~i~ 130 (296)
...|.-|-+.+.. ++++ +..-+..||.+|+ .|-.|+..|.
T Consensus 5 ~~~C~~C~~~I~~~~~~~~-~~a~~~~wH~~CF---------~C~~C~~~L~ 46 (72)
T 1x4l_A 5 SSGCAGCTNPISGLGGTKY-ISFEERQWHNDCF---------NCKKCSLSLV 46 (72)
T ss_dssp SCSBTTTTBCCCCSSSCSC-EECSSCEECTTTC---------BCSSSCCBCT
T ss_pred CCCCcCCCccccCCCCcce-EEECCcccCcccC---------EeccCCCcCC
Confidence 4679999988875 3233 2336788998883 3888877765
No 174
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=33.31 E-value=38 Score=22.29 Aligned_cols=17 Identities=18% Similarity=0.393 Sum_probs=7.2
Q ss_pred cchhhhHHHHHHHHHHH
Q 022509 12 SAWSIMAISFISLLAMS 28 (296)
Q Consensus 12 s~w~iliI~fi~Ll~i~ 28 (296)
..|.+++-+++.+++++
T Consensus 9 p~wiIi~s~l~GLllL~ 25 (42)
T 2k1a_A 9 PIWWVLVGVLGGLLLLT 25 (42)
T ss_dssp CHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHH
Confidence 34544444444444333
No 175
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=32.54 E-value=30 Score=24.53 Aligned_cols=39 Identities=23% Similarity=0.532 Sum_probs=26.9
Q ss_pred CCccceecccccCCCceEEeCCCCccchhhHHHHHhhCCCCCCccccccCC
Q 022509 81 SRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDART 131 (296)
Q Consensus 81 ~~~CaICLe~f~~~d~vr~LpCgH~FH~~CId~WL~~~~~tCPlCR~~i~~ 131 (296)
...|+.|-+.+. ++.+. .-+..||.+|+ .|-.|+..+..
T Consensus 15 ~~~C~~C~~~I~-~~~v~--a~~~~wH~~CF---------~C~~C~~~L~~ 53 (81)
T 1v6g_A 15 GTRCFSCDQFIE-GEVVS--ALGKTYHPDCF---------VCAVCRLPFPP 53 (81)
T ss_dssp CCBCTTTCCBCC-SCCEE--ETTEEECTTTS---------SCSSSCCCCCS
T ss_pred CCcCccccCEec-cceEE--ECCceeCccCC---------ccccCCCCCCC
Confidence 358999999887 34333 35788998883 37777776654
No 176
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=32.37 E-value=9.3 Score=30.18 Aligned_cols=24 Identities=25% Similarity=0.599 Sum_probs=14.9
Q ss_pred CCCCccchhhHHHHHhhCCCCCCccccccC
Q 022509 101 PCRHKFHAFCVDSWLTSWRTFCPVCKRDAR 130 (296)
Q Consensus 101 pCgH~FH~~CId~WL~~~~~tCPlCR~~i~ 130 (296)
.||+.|. +. +. ....||.|+..-.
T Consensus 72 ~CG~~F~----~~-~~-kPsrCP~CkSe~I 95 (105)
T 2gmg_A 72 KCGFVFK----AE-IN-IPSRCPKCKSEWI 95 (105)
T ss_dssp TTCCBCC----CC-SS-CCSSCSSSCCCCB
T ss_pred hCcCeec----cc-CC-CCCCCcCCCCCcc
Confidence 4899991 11 12 2466999987543
No 177
>2rdd_B UPF0092 membrane protein YAJC; drug resistance, multidrug efflux, transporter, antiporter, novel transmembrane helix, ACRB, inner membrane; HET: AIC; 3.50A {Escherichia coli}
Probab=32.18 E-value=38 Score=21.30 Aligned_cols=8 Identities=25% Similarity=0.588 Sum_probs=3.0
Q ss_pred HHHHHhhh
Q 022509 34 CFFVRRHR 41 (296)
Q Consensus 34 ~~~i~r~r 41 (296)
++++.|-+
T Consensus 17 YFl~iRPQ 24 (37)
T 2rdd_B 17 YFMILRPQ 24 (37)
T ss_dssp HHHTHHHH
T ss_pred HHHHhhhH
Confidence 33333333
No 178
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=32.09 E-value=50 Score=22.46 Aligned_cols=38 Identities=18% Similarity=0.544 Sum_probs=25.6
Q ss_pred CCccceecccccCCCceEEeCCCCccchhhHHHHHhhCCCCCCccccccC
Q 022509 81 SRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDAR 130 (296)
Q Consensus 81 ~~~CaICLe~f~~~d~vr~LpCgH~FH~~CId~WL~~~~~tCPlCR~~i~ 130 (296)
...|..|-+.+.. +. +..-+..||.+|+ .|-.|+..+.
T Consensus 5 ~~~C~~C~~~I~~-~~--~~a~~~~~H~~CF---------~C~~C~~~L~ 42 (70)
T 2d8z_A 5 SSGCVQCKKPITT-GG--VTYREQPWHKECF---------VCTACRKQLS 42 (70)
T ss_dssp CCBCSSSCCBCCS-SE--EESSSSEEETTTS---------BCSSSCCBCT
T ss_pred CCCCcccCCeecc-ce--EEECccccCCCCC---------ccCCCCCcCC
Confidence 4678888888763 32 3345778888873 3777877764
No 179
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=31.52 E-value=37 Score=23.77 Aligned_cols=40 Identities=28% Similarity=0.495 Sum_probs=27.0
Q ss_pred CCccceecccccC--CCceEEeCCCCccchhhHHHHHhhCCCCCCccccccC
Q 022509 81 SRTCAICLEDYSV--GEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDAR 130 (296)
Q Consensus 81 ~~~CaICLe~f~~--~d~vr~LpCgH~FH~~CId~WL~~~~~tCPlCR~~i~ 130 (296)
...|+.|-+.+.. .+++ +..-+..||.+|+ .|-.|+..+.
T Consensus 5 ~~~C~~C~~~I~~~g~~~~-~~a~~~~wH~~CF---------~C~~C~~~L~ 46 (76)
T 1x68_A 5 SSGCVACSKPISGLTGAKF-ICFQDSQWHSECF---------NCGKCSVSLV 46 (76)
T ss_dssp CCCCTTTCCCCCTTTTCCE-EEETTEEEEGGGC---------BCTTTCCBCS
T ss_pred CCCCccCCCcccCCCCcee-EEECCcccCcccC---------ChhhCCCcCC
Confidence 4679999998875 2222 3335778999883 3777777665
No 180
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=30.77 E-value=41 Score=22.95 Aligned_cols=38 Identities=21% Similarity=0.501 Sum_probs=23.8
Q ss_pred CCccceecccccCCCceEEeCCCCccchhhHHHHHhhCCCCCCccccccC
Q 022509 81 SRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDAR 130 (296)
Q Consensus 81 ~~~CaICLe~f~~~d~vr~LpCgH~FH~~CId~WL~~~~~tCPlCR~~i~ 130 (296)
...|.-|-+.+.. +.+. .-+..||.+|+ .|-.|+..+.
T Consensus 5 ~~~C~~C~~~I~~-~~~~--a~~~~~H~~CF---------~C~~C~~~L~ 42 (69)
T 2cur_A 5 SSGCVKCNKAITS-GGIT--YQDQPWHADCF---------VCVTCSKKLA 42 (69)
T ss_dssp CCCCSSSCCCCCT-TCEE--ETTEEECTTTT---------BCTTTCCBCT
T ss_pred cCCCcccCCEeCc-ceEE--ECccccccCcC---------EECCCCCCCC
Confidence 3568888877753 3333 24667887773 2777776665
No 181
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=30.14 E-value=25 Score=27.35 Aligned_cols=36 Identities=19% Similarity=0.402 Sum_probs=19.5
Q ss_pred CCccceecccccCCCceEEeCCCCccchhhHHHHHhh
Q 022509 81 SRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTS 117 (296)
Q Consensus 81 ~~~CaICLe~f~~~d~vr~LpCgH~FH~~CId~WL~~ 117 (296)
-..|..|-..+..++.... .=+..||..|..+.+..
T Consensus 36 CF~C~~C~~~L~~g~~f~~-~~g~~yC~~cy~~~~~~ 71 (123)
T 2l3k_A 36 CFKCAACQKHFSVGDRYLL-INSDIVCEQDIYEWTKI 71 (123)
T ss_dssp TCBCTTTCCBCCTTCEEEE-CSSSEEEGGGHHHHHHH
T ss_pred cCccccCCCCCCCCCcEEe-eCCEEEcHHHhHHHhcc
Confidence 3566666666644443322 23556666666665543
No 182
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=29.76 E-value=25 Score=27.62 Aligned_cols=39 Identities=21% Similarity=0.354 Sum_probs=29.1
Q ss_pred CCccceecccccCCCceEEeCCCCccchhhHHHHHhhCCCCCCccccccC
Q 022509 81 SRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDAR 130 (296)
Q Consensus 81 ~~~CaICLe~f~~~d~vr~LpCgH~FH~~CId~WL~~~~~tCPlCR~~i~ 130 (296)
...|+-|-+.+.....+. .-+..||.+| ..|-.|+..+.
T Consensus 61 ~~~C~~C~~~I~~~~~v~--a~~~~wH~~C---------F~C~~C~~~L~ 99 (123)
T 2l4z_A 61 WKRCAGCGGKIADRFLLY--AMDSYWHSRC---------LKCSSCQAQLG 99 (123)
T ss_dssp CSBBSSSSSBCCSSSEEE--ETTEEEETTT---------SBCTTTCCBGG
T ss_pred CCcCcCCCCCcCCcEEEE--eCCcEEcccc---------cCcCcCCCccc
Confidence 358999999987554343 3588899998 33888988876
No 183
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=29.63 E-value=23 Score=25.12 Aligned_cols=39 Identities=23% Similarity=0.439 Sum_probs=25.4
Q ss_pred CCccceecccccCCCceEEeCCCCccchhhHHHHHhhCCCCCCccccccCC
Q 022509 81 SRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDART 131 (296)
Q Consensus 81 ~~~CaICLe~f~~~d~vr~LpCgH~FH~~CId~WL~~~~~tCPlCR~~i~~ 131 (296)
...|+.|-+.+. ++.+ ..-+..||.+|+ .|-.|+..+..
T Consensus 15 ~~~C~~C~~~I~-~~~~--~a~~~~~H~~CF---------~C~~C~~~L~~ 53 (81)
T 1x6a_A 15 GEFCHGCSLLMT-GPFM--VAGEFKYHPECF---------ACMSCKVIIED 53 (81)
T ss_dssp SCBCTTTCCBCC-SCCB--CCTTCCBCTTSC---------BCTTTCCBCCT
T ss_pred CCcCccCCCCcC-ceEE--EECCceeccccC---------CccCCCCccCC
Confidence 357888888877 3322 234777887772 37778777753
No 184
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=28.94 E-value=12 Score=35.21 Aligned_cols=36 Identities=17% Similarity=0.268 Sum_probs=0.0
Q ss_pred CCCccceecccccCCCc-eEEeCCCCccchhhHHHHH
Q 022509 80 TSRTCAICLEDYSVGEK-LRILPCRHKFHAFCVDSWL 115 (296)
Q Consensus 80 ~~~~CaICLe~f~~~d~-vr~LpCgH~FH~~CId~WL 115 (296)
+...|.+|...|..-.. --.-.||++||..|...++
T Consensus 374 ~~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~ 410 (434)
T 3mpx_A 374 HVMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKY 410 (434)
T ss_dssp -------------------------------------
T ss_pred cCCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCee
Confidence 45789999999875421 1122499999999998765
No 185
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=28.82 E-value=21 Score=28.01 Aligned_cols=12 Identities=25% Similarity=0.858 Sum_probs=11.0
Q ss_pred cchhhHHHHHhh
Q 022509 106 FHAFCVDSWLTS 117 (296)
Q Consensus 106 FH~~CId~WL~~ 117 (296)
||+.|+..|+..
T Consensus 43 FCRNCLskWy~~ 54 (105)
T 2o35_A 43 FCRNCLSNWYRE 54 (105)
T ss_dssp CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999999974
No 186
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=28.34 E-value=21 Score=27.89 Aligned_cols=12 Identities=33% Similarity=0.913 Sum_probs=10.9
Q ss_pred cchhhHHHHHhh
Q 022509 106 FHAFCVDSWLTS 117 (296)
Q Consensus 106 FH~~CId~WL~~ 117 (296)
||+.|+..|+..
T Consensus 42 FCRNCLskWy~~ 53 (104)
T 3fyb_A 42 FCRNCLAKWLME 53 (104)
T ss_dssp CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999999973
No 187
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.07 E-value=36 Score=24.05 Aligned_cols=39 Identities=15% Similarity=0.277 Sum_probs=26.7
Q ss_pred CCCccceecccccCCCceEEeCCCCccchhhHHHHHhhCCCCCCccccccC
Q 022509 80 TSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDAR 130 (296)
Q Consensus 80 ~~~~CaICLe~f~~~d~vr~LpCgH~FH~~CId~WL~~~~~tCPlCR~~i~ 130 (296)
....|.-|-+.+.. +. +..-+..||.+|+ .|-.|+..|.
T Consensus 14 ~~~~C~~C~~~I~~-~~--~~a~~~~~H~~CF---------~C~~C~~~L~ 52 (79)
T 1x62_A 14 KLPMCDKCGTGIVG-VF--VKLRDRHRHPECY---------VCTDCGTNLK 52 (79)
T ss_dssp CCCCCSSSCCCCCS-SC--EECSSCEECTTTT---------SCSSSCCCHH
T ss_pred CCCccccCCCCccC-cE--EEECcceeCcCcC---------eeCCCCCCCC
Confidence 35789999998875 32 3345788998884 2666766553
No 188
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=27.95 E-value=89 Score=20.72 Aligned_cols=29 Identities=14% Similarity=0.044 Sum_probs=13.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Q 022509 17 MAISFISLLAMSAVLATCFFVRRHRIRRE 45 (296)
Q Consensus 17 liI~fi~Ll~i~~vl~i~~~i~r~r~rr~ 45 (296)
..|+.+.+-+++++++.+.+....|.|++
T Consensus 12 ~~Ia~~vVGvll~vi~~l~~~~~~RRR~~ 40 (44)
T 2jwa_A 12 TSIISAVVGILLVVVLGVVFGILIKRRQQ 40 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCS
T ss_pred cchHHHHHHHHHHHHHHHHHHhheehhhh
Confidence 44555555544444444444444444443
No 189
>1iij_A ERBB-2 receptor protein-tyrosine kinase; alpha-helix-PI-bulge-alpha-helix, signaling protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=26.11 E-value=24 Score=22.43 Aligned_cols=6 Identities=17% Similarity=0.639 Sum_probs=2.3
Q ss_pred HHHHHh
Q 022509 34 CFFVRR 39 (296)
Q Consensus 34 ~~~i~r 39 (296)
.++++|
T Consensus 28 ~~~iRR 33 (35)
T 1iij_A 28 GILIKR 33 (35)
T ss_dssp THHHHH
T ss_pred heEEee
Confidence 334333
No 190
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=26.02 E-value=57 Score=23.87 Aligned_cols=46 Identities=15% Similarity=0.234 Sum_probs=24.9
Q ss_pred CCccceecccccCCCceEEeCCCCccchhhHHHHHhhCCCCCCccccccCC
Q 022509 81 SRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDART 131 (296)
Q Consensus 81 ~~~CaICLe~f~~~d~vr~LpCgH~FH~~CId~WL~~~~~tCPlCR~~i~~ 131 (296)
-..|..|...+.... . ...=|.+|+..|..+- ....|..|.+.|..
T Consensus 33 CF~C~~C~~~L~~~~-~-~~~~g~~yC~~cy~~~---~~~~C~~C~~~I~~ 78 (101)
T 2cup_A 33 CFRCAKCLHPLANET-F-VAKDNKILCNKCTTRE---DSPKCKGCFKAIVA 78 (101)
T ss_dssp TCCCSSSCCCTTSSC-C-EEETTEEECHHHHTTC---CCCBCSSSCCBCCS
T ss_pred CCcccccCCCCCcCe-e-ECcCCEEEChhHhhhh---cCCccccCCCcccc
Confidence 456777766664321 1 1123556666665432 23458888777753
No 191
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=25.74 E-value=52 Score=22.14 Aligned_cols=39 Identities=15% Similarity=0.403 Sum_probs=27.2
Q ss_pred CCccceecccccCCCceEEeCCCCccchhhHHHHHhhCCCCCCccccccCC
Q 022509 81 SRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDART 131 (296)
Q Consensus 81 ~~~CaICLe~f~~~d~vr~LpCgH~FH~~CId~WL~~~~~tCPlCR~~i~~ 131 (296)
...|+.|-+.+. ++. +..=+..||.+|+ .|-.|+..+..
T Consensus 5 ~~~C~~C~~~I~-~~~--~~a~~~~~H~~CF---------~C~~C~~~L~~ 43 (66)
T 1nyp_A 5 VPICGACRRPIE-GRV--VNAMGKQWHVEHF---------VCAKCEKPFLG 43 (66)
T ss_dssp CCEETTTTEECC-SCE--ECCTTSBEETTTC---------BCTTTCCBCSS
T ss_pred CCCCcccCCEec-ceE--EEECccccccCcC---------EECCCCCCCCC
Confidence 467889988887 432 3345778998882 38888877754
No 192
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=25.54 E-value=48 Score=23.04 Aligned_cols=40 Identities=20% Similarity=0.555 Sum_probs=28.5
Q ss_pred CCccceecccccC---C-CceEEeCCCCccchhhHHHHHhhCCCCCCccccccCC
Q 022509 81 SRTCAICLEDYSV---G-EKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDART 131 (296)
Q Consensus 81 ~~~CaICLe~f~~---~-d~vr~LpCgH~FH~~CId~WL~~~~~tCPlCR~~i~~ 131 (296)
...|+-|-+.+.. . +.+. .=+..||.+|+ .|-.|+..+..
T Consensus 15 ~~~C~~C~~~I~~~g~~~~~~~--a~~~~~H~~CF---------~C~~C~~~L~~ 58 (77)
T 2egq_A 15 AKKCAGCKNPITGFGKGSSVVA--YEGQSWHDYCF---------HCKKCSVNLAN 58 (77)
T ss_dssp CCCCSSSCCCCCCCSSCCCEEE--ETTEEEETTTC---------BCSSSCCBCTT
T ss_pred CccCcccCCcccCCCCCceeEE--ECcceeCcccC---------EehhcCCCCCC
Confidence 4689999999885 2 3333 34778999883 38889888763
No 193
>2lx0_A Membrane fusion protein P14; membrane fusion protein transmembrane domain, P14 fast prote ARCH, micelle-peptide complex, membrane protein; NMR {Synthetic}
Probab=25.48 E-value=91 Score=18.79 Aligned_cols=18 Identities=28% Similarity=0.407 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 022509 23 SLLAMSAVLATCFFVRRH 40 (296)
Q Consensus 23 ~Ll~i~~vl~i~~~i~r~ 40 (296)
.+++++.++++.|++.+.
T Consensus 11 glvalltflafgfwlfky 28 (32)
T 2lx0_A 11 GLVALLTFLAFGFWLFKY 28 (32)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 445555555555555443
No 194
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=25.00 E-value=52 Score=23.89 Aligned_cols=28 Identities=25% Similarity=0.163 Sum_probs=14.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 022509 16 IMAISFISLLAMSAVLATCFFVRRHRIR 43 (296)
Q Consensus 16 iliI~fi~Ll~i~~vl~i~~~i~r~r~r 43 (296)
+++-..+.+++++.+.+++....+++.|
T Consensus 12 ivlGg~~~lll~~glcI~ccvkcrhRrr 39 (70)
T 2klu_A 12 IVLGGVAGLLLFIGLGIFFSVRSRHRRR 39 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSSCCSS
T ss_pred HHHhHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 4554555555555566666664444333
No 195
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=25.00 E-value=22 Score=24.87 Aligned_cols=23 Identities=22% Similarity=0.586 Sum_probs=15.5
Q ss_pred HHhhCCCCCCccccccCCCCCCC
Q 022509 114 WLTSWRTFCPVCKRDARTSTGEP 136 (296)
Q Consensus 114 WL~~~~~tCPlCR~~i~~~~~~~ 136 (296)
|+...-..||.|+..|....+-.
T Consensus 1 wi~~~~k~CP~C~~~Iek~~GCn 23 (60)
T 1wd2_A 1 WIAANTKECPKCHVTIEKDGGCN 23 (60)
T ss_dssp CCCCCCCCCTTTCCCCSSCCSCC
T ss_pred CccccceECcCCCCeeEeCCCCC
Confidence 55544455999998888766543
No 196
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=24.26 E-value=44 Score=27.31 Aligned_cols=39 Identities=28% Similarity=0.580 Sum_probs=20.1
Q ss_pred CccceecccccCCCceEEeCCCCccchhhHHHHHhhCCCCCCccccccC
Q 022509 82 RTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDAR 130 (296)
Q Consensus 82 ~~CaICLe~f~~~d~vr~LpCgH~FH~~CId~WL~~~~~tCPlCR~~i~ 130 (296)
..|..|-+.+...+.+. ..-+..||.+|+ .|-.|+..+.
T Consensus 66 ~~C~~C~~~I~~~~~v~-~a~~~~~H~~CF---------~C~~C~~~L~ 104 (169)
T 2rgt_A 66 TKCAACQLGIPPTQVVR-RAQDFVYHLHCF---------ACVVCKRQLA 104 (169)
T ss_dssp CBCTTTCCBCCTTSEEE-EETTEEEEGGGC---------BCTTTCCBCC
T ss_pred ccccccccccCCCcEEE-EcCCceEeeCCC---------cCCCCCCCCC
Confidence 45666665555443221 124566666663 2666655554
No 197
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=23.11 E-value=38 Score=28.27 Aligned_cols=27 Identities=22% Similarity=0.420 Sum_probs=16.5
Q ss_pred CccceecccccCCCceEEeCCCCccchhh
Q 022509 82 RTCAICLEDYSVGEKLRILPCRHKFHAFC 110 (296)
Q Consensus 82 ~~CaICLe~f~~~d~vr~LpCgH~FH~~C 110 (296)
..|+.|-+.+..++.+.. =+..||.+|
T Consensus 116 ~~C~~C~~~I~~~~~v~a--~~~~~H~~C 142 (192)
T 1b8t_A 116 DGCPRCGQAVYAAEKVIG--AGKSWHKSC 142 (192)
T ss_dssp EECTTTSCEECSSSCEEE--TTEEECTTT
T ss_pred CcCCCCCCEecCcEEEec--CCCccchhc
Confidence 457777777766555442 355666665
No 198
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=22.55 E-value=3.3 Score=30.65 Aligned_cols=14 Identities=21% Similarity=0.650 Sum_probs=12.7
Q ss_pred CCCCccchhhHHHH
Q 022509 101 PCRHKFHAFCVDSW 114 (296)
Q Consensus 101 pCgH~FH~~CId~W 114 (296)
.||+.|+..|-+.|
T Consensus 55 ~C~~~FC~~C~~~w 68 (80)
T 2jmo_A 55 GCGFAFCRECKEAY 68 (80)
T ss_dssp CCSCCEETTTTEEC
T ss_pred CCCCeeccccCccc
Confidence 58999999999988
No 199
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=21.62 E-value=26 Score=22.00 Aligned_cols=8 Identities=38% Similarity=1.236 Sum_probs=4.5
Q ss_pred CCcccccc
Q 022509 122 CPVCKRDA 129 (296)
Q Consensus 122 CPlCR~~i 129 (296)
||+|++.+
T Consensus 8 CP~C~~~l 15 (34)
T 3mjh_B 8 CPQCMKSL 15 (34)
T ss_dssp CTTTCCEE
T ss_pred CcHHHHHc
Confidence 66665544
No 200
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens}
Probab=21.51 E-value=16 Score=35.59 Aligned_cols=49 Identities=22% Similarity=0.323 Sum_probs=30.3
Q ss_pred CccceecccccCCCceEEe-CCCCccchhhHHHHHh----hCCCCCCccccccC
Q 022509 82 RTCAICLEDYSVGEKLRIL-PCRHKFHAFCVDSWLT----SWRTFCPVCKRDAR 130 (296)
Q Consensus 82 ~~CaICLe~f~~~d~vr~L-pCgH~FH~~CId~WL~----~~~~tCPlCR~~i~ 130 (296)
....||...+..+..+..- .|.--||..|+.---. ..+-.||.|+....
T Consensus 5 ~~yCiC~~~~d~~~~MIqCD~C~~WfH~~CVgi~~~~~~~~~~y~C~~C~~~~~ 58 (447)
T 3kv4_A 5 PVYCLCRLPYDVTRFMIECDMCQDWFHGSCVGVEEEKAADIDLYHCPNCEVLHG 58 (447)
T ss_dssp CEETTTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTEEECCCHHHHHHHC
T ss_pred CeEEeCCCcCCCCCCeEEcCCCCcccccccCCcCcccccCCCEEECCCCccccC
Confidence 3455898877544444333 3888899999842111 12346999976544
No 201
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=21.42 E-value=27 Score=21.00 Aligned_cols=12 Identities=33% Similarity=0.778 Sum_probs=8.4
Q ss_pred CCCCccccccCC
Q 022509 120 TFCPVCKRDART 131 (296)
Q Consensus 120 ~tCPlCR~~i~~ 131 (296)
..||+|+..+.+
T Consensus 4 ~~CpvCk~q~Pd 15 (28)
T 2jvx_A 4 FCCPKCQYQAPD 15 (28)
T ss_dssp EECTTSSCEESS
T ss_pred ccCccccccCcC
Confidence 358999876654
No 202
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.89 E-value=62 Score=22.62 Aligned_cols=39 Identities=23% Similarity=0.385 Sum_probs=26.6
Q ss_pred CCccceecccccCCCceEEeCCCCccchhhHHHHHhhCCCCCCccccccCC
Q 022509 81 SRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDART 131 (296)
Q Consensus 81 ~~~CaICLe~f~~~d~vr~LpCgH~FH~~CId~WL~~~~~tCPlCR~~i~~ 131 (296)
...|+.|-+.+.. +.+. .-+..||.+|+ .|-.|+..+..
T Consensus 15 ~~~C~~C~~~I~~-~~v~--a~~~~~H~~CF---------~C~~C~~~L~~ 53 (80)
T 1x3h_A 15 SPKCGGCNRPVLE-NYLS--AMDTVWHPECF---------VCGDCFTSFST 53 (80)
T ss_dssp SCBCTTTCCBCCS-SCEE--ETTEEECTTTC---------BCSSSCCBSCS
T ss_pred CCccccCCCeecc-eeEE--ECCCeEecCcC---------ChhhCCCCCCC
Confidence 3578888888775 3333 34678888872 37888777754
No 203
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.25 E-value=66 Score=22.62 Aligned_cols=40 Identities=30% Similarity=0.563 Sum_probs=27.4
Q ss_pred CCCccceecccccCCCceEEeCCCCccchhhHHHHHhhCCCCCCccccccCC
Q 022509 80 TSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDART 131 (296)
Q Consensus 80 ~~~~CaICLe~f~~~d~vr~LpCgH~FH~~CId~WL~~~~~tCPlCR~~i~~ 131 (296)
....|+-|-+.+.. +.+. .-+..||.+|+ .|-.|+..+..
T Consensus 14 ~~~~C~~C~~~I~~-~~~~--a~~~~~H~~CF---------~C~~C~~~L~~ 53 (81)
T 2dlo_A 14 TLEKCATCSQPILD-RILR--AMGKAYHPGCF---------TCVVCHRGLDG 53 (81)
T ss_dssp SCCBCTTTCCBCCS-CCEE--ETTEEECTTTC---------BCSSSCCBCTT
T ss_pred CCCccccCCCeecc-eeEE--ECCccccHHhc---------CcccCCCccCC
Confidence 35689999888873 3333 35778998883 38888877753
No 204
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=20.09 E-value=40 Score=28.24 Aligned_cols=25 Identities=20% Similarity=0.369 Sum_probs=15.6
Q ss_pred CceEEeCCCCccchhhHHHHHhhCCCCCCcccc
Q 022509 95 EKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKR 127 (296)
Q Consensus 95 d~vr~LpCgH~FH~~CId~WL~~~~~tCPlCR~ 127 (296)
...+...|||++-. . -...||+|..
T Consensus 137 ~~~~C~~CG~i~~~-------~-~p~~CP~Cg~ 161 (170)
T 3pwf_A 137 KVYICPICGYTAVD-------E-APEYCPVCGA 161 (170)
T ss_dssp CEEECTTTCCEEES-------C-CCSBCTTTCC
T ss_pred CeeEeCCCCCeeCC-------C-CCCCCCCCCC
Confidence 34455558998762 1 2346999964
Done!