Query 022510
Match_columns 296
No_of_seqs 194 out of 917
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 06:40:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022510.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022510hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4a2n_B Isoprenylcysteine carbo 99.4 1.7E-12 5.7E-17 113.3 9.2 114 181-296 75-194 (194)
2 3kf9_B MLCK2, myosin light cha 57.7 4.3 0.00015 22.3 1.2 12 17-28 3-14 (22)
3 1rpq_W Peptide E131; receptor- 30.1 16 0.00054 20.2 0.7 10 229-238 1-10 (26)
4 1cf4_B Protein (activated P21C 6.2 1.7E+02 0.0059 18.7 0.8 9 2-10 28-36 (44)
5 3jtz_A Integrase; four strande 5.0 5E+02 0.017 18.4 2.9 29 202-233 5-33 (88)
6 1fll_X B-cell surface antigen 4.0 3.1E+02 0.011 15.3 0.8 8 3-10 10-17 (26)
7 2ket_A Cathelicidin-6; antimic 3.7 41 0.0014 18.7 -3.0 19 275-293 4-22 (27)
8 2y8t_A Apical membrane antigen 3.6 3.1E+02 0.011 26.0 0.9 15 214-234 48-62 (432)
9 2klq_A CBD, P105MCM, DNA repli 3.6 2E+02 0.007 21.8 -0.3 12 226-237 102-113 (114)
10 2obs_A Capsid protein; P domai 3.4 2.6E+02 0.0089 25.5 0.2 15 13-27 239-253 (327)
No 1
>4a2n_B Isoprenylcysteine carboxyl methyltransferase; membrane protein, RAS and RHO gtpases signallin; HET: SAH PLM CDL; 3.40A {Methanosarcina acetivorans}
Probab=99.36 E-value=1.7e-12 Score=113.26 Aligned_cols=114 Identities=11% Similarity=0.123 Sum_probs=83.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhh-ccccccCCcceeeecccccceecccchhHHHHHHHHHHHHhcCchhHHHH-H
Q 022510 181 RWFQWIGAAIFLWGWMHQRCCHAILGS-LRERAEQIDEYVIPHGDWFEIVSCPHYLAEIVIYAGLLVASGGTDITIWL-L 258 (296)
Q Consensus 181 ~~~~~~gi~lf~~g~~~q~~~h~~La~-lRk~~~~~~~y~iP~gglF~~vscPnY~~Eil~w~~~~l~~~~~~~~~~~-~ 258 (296)
.+...+|+++++.|......++.+|.+ .+...+.++++++.+.|+|++++||||++|++.++|++++.++. ++..+ .
T Consensus 75 ~~~~~~G~~l~l~G~~l~~~a~~~Lg~~f~~~~~~~~~~~Lvt~G~y~~vRHP~Y~G~~l~~~g~~l~~~s~-~~~~~~~ 153 (194)
T 4a2n_B 75 DSIRLFALIVTFLNIGLFTKIHKDLGNNWSAILEIKDGHKLVKEGIYKNIRHPMYAHLWLWVITQGIILSNW-VVLIFGI 153 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHGGGCCSSCCEETTCCCCCSSTTTTBSSHHHHHHHHHHHHHHHHHTCH-HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCCeeeecCcchhccCccHHHHHHHHHHHHHHhccH-HHHHHHH
Confidence 456789999999999999999999954 44322235668899999999999999999999999999998642 22221 2
Q ss_pred HHHHHHHHhHHHHHHHHHHHHhc----CcCCCCcceeecccC
Q 022510 259 FAFVVVNLVFAAAETQRWYIRKF----DNYPSNRYAIIPYVY 296 (296)
Q Consensus 259 ~~~v~~nl~~~A~~~h~wY~~~F----~~yp~~R~alIPfi~ 296 (296)
..+++. +..++...++..+++| ++|.++++++||+|.
T Consensus 154 ~~~~~~-~~~ri~~EE~~L~~~fG~~Y~~Y~~rv~r~iP~i~ 194 (194)
T 4a2n_B 154 VAWAIL-YFIRVPKEEELLIEEFGDEYIEYMGKTGRLFPKVV 194 (194)
T ss_dssp HHHHHH-HHHHHHHHHHHHHHHHTHHHHHHHHHCBSSSCC--
T ss_pred HHHHHH-HHHHHHHHHHHHHHHhCHHHHHHHHhCCeeCceeC
Confidence 223222 3356666666677766 457788889999974
No 2
>3kf9_B MLCK2, myosin light chain kinase 2, skeletal/cardiac MUS; centrin, cell cycle, cell divisio mitosis, calmodulin-binding; 2.60A {Scherffelia dubia}
Probab=57.71 E-value=4.3 Score=22.25 Aligned_cols=12 Identities=25% Similarity=0.404 Sum_probs=10.3
Q ss_pred cchhHHHHHHHH
Q 022510 17 RFFCHFYVVAVV 28 (296)
Q Consensus 17 ~wF~HFYi~~~~ 28 (296)
+|-+|||++..+
T Consensus 3 ~WkK~f~av~Aa 14 (22)
T 3kf9_B 3 RWKKNFIAVSAA 14 (26)
T ss_dssp HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHH
Confidence 699999998775
No 3
>1rpq_W Peptide E131; receptor-peptide complex, membrane protein; HET: NAG BMA NDG CIT; 3.00A {Homo sapiens} PDB: 1kco_A
Probab=30.07 E-value=16 Score=20.24 Aligned_cols=10 Identities=50% Similarity=1.215 Sum_probs=7.8
Q ss_pred ecccchhHHH
Q 022510 229 VSCPHYLAEI 238 (296)
Q Consensus 229 vscPnY~~Ei 238 (296)
|.|||+..|.
T Consensus 1 vqcphfcyel 10 (26)
T 1rpq_W 1 VQCPHFCYEL 10 (26)
T ss_dssp CCCCTHHHHS
T ss_pred CCCCeeeeec
Confidence 5699998874
No 4
>1cf4_B Protein (activated P21CDC42HS kinase); CDC42/ACK GTPase complex, G protein, transferase; HET: GNP; NMR {Homo sapiens}
Probab=6.17 E-value=1.7e+02 Score=18.67 Aligned_cols=9 Identities=44% Similarity=1.475 Sum_probs=6.8
Q ss_pred CcccCCCCc
Q 022510 2 GLCWGLPKE 10 (296)
Q Consensus 2 ~~~~~~~~~ 10 (296)
|.+||-|..
T Consensus 28 ~~sWG~P~~ 36 (44)
T 1cf4_B 28 RHCWGFPDR 36 (44)
T ss_dssp SSCCCSSCC
T ss_pred ccccCChhH
Confidence 678999843
No 5
>3jtz_A Integrase; four stranded beta-sheet, DNA binding protein; 1.30A {Yersinia pestis} PDB: 3rmp_A
Probab=4.99 E-value=5e+02 Score=18.45 Aligned_cols=29 Identities=10% Similarity=0.197 Sum_probs=20.2
Q ss_pred HHHHhhccccccCCcceeeecccccceecccc
Q 022510 202 HAILGSLRERAEQIDEYVIPHGDWFEIVSCPH 233 (296)
Q Consensus 202 h~~La~lRk~~~~~~~y~iP~gglF~~vscPn 233 (296)
+.+++++++ .++.|.+.+|+.+.+...|+
T Consensus 5 ~~~i~~~kp---~~k~~~~~Dg~GL~L~V~ps 33 (88)
T 3jtz_A 5 DAKIRTLKP---SDKPFKVSDSHGLYLLVKPG 33 (88)
T ss_dssp HHHHHHCCC---CSSCEEEECSTTEEEEECTT
T ss_pred HHHHhcCCC---CCCcEEEecCCceEEEEecC
Confidence 456677765 35668888887777766675
No 6
>1fll_X B-cell surface antigen CD40; TRAF3 with CD40 peptide, TNF signaling, apoptosis; 3.50A {Homo sapiens}
Probab=4.00 E-value=3.1e+02 Score=15.33 Aligned_cols=8 Identities=25% Similarity=0.140 Sum_probs=5.0
Q ss_pred cccCCCCc
Q 022510 3 LCWGLPKE 10 (296)
Q Consensus 3 ~~~~~~~~ 10 (296)
++||.|+-
T Consensus 10 l~~~qPVa 17 (26)
T 1fll_X 10 LHGSQPVT 17 (26)
T ss_dssp CCCSSSCC
T ss_pred hhcCccch
Confidence 56777753
No 7
>2ket_A Cathelicidin-6; antimicrobial peptide, antibiotic, antimicrobial, fungicide, pyrrolidone carboxylic acid, secreted; NMR {Bos taurus}
Probab=3.70 E-value=41 Score=18.72 Aligned_cols=19 Identities=21% Similarity=0.457 Sum_probs=9.4
Q ss_pred HHHHHhcCcCCCCcceeec
Q 022510 275 RWYIRKFDNYPSNRYAIIP 293 (296)
Q Consensus 275 ~wY~~~F~~yp~~R~alIP 293 (296)
++++++|+.--++-...||
T Consensus 4 krfrkkfkklfkklspvip 22 (27)
T 2ket_A 4 KRFRKKFKKLFKKLSPVIP 22 (27)
T ss_dssp HHHHHHHHHHHHHHSCSCH
T ss_pred HHHHHHHHHHHHhcCcccc
Confidence 4566666543233444555
No 8
>2y8t_A Apical membrane antigen, putative; membrane protein, moving junction, invasion; HET: NAG; 1.95A {Toxoplasma gondii} PDB: 2y8r_A* 2y8s_A* 2x2z_A*
Probab=3.59 E-value=3.1e+02 Score=25.97 Aligned_cols=15 Identities=33% Similarity=0.645 Sum_probs=11.0
Q ss_pred CCcceeeecccccceecccch
Q 022510 214 QIDEYVIPHGDWFEIVSCPHY 234 (296)
Q Consensus 214 ~~~~y~iP~gglF~~vscPnY 234 (296)
|+++|+||.| +||+|
T Consensus 48 g~~~YRiP~G------kCPv~ 62 (432)
T 2y8t_A 48 DGTLYREPAG------LCPIW 62 (432)
T ss_dssp TTEEEEECCC------SSCEE
T ss_pred cCccccccCC------CCCcc
Confidence 4568999965 57776
No 9
>2klq_A CBD, P105MCM, DNA replication licensing factor MCM6; PRE-RC, CDT1, CBD structure, ATP-BIND cycle, DNA-binding, nucleotide-binding, nucleus; HET: DNA; NMR {Homo sapiens}
Probab=3.56 E-value=2e+02 Score=21.83 Aligned_cols=12 Identities=42% Similarity=0.553 Sum_probs=9.3
Q ss_pred cceecccchhHH
Q 022510 226 FEIVSCPHYLAE 237 (296)
Q Consensus 226 F~~vscPnY~~E 237 (296)
--++.||||-.|
T Consensus 102 ~~lvVHPNy~~~ 113 (114)
T 2klq_A 102 PYLVVNPNYLLE 113 (114)
T ss_dssp CBCEECSCCCCC
T ss_pred eEEEECCCCCCC
Confidence 359999999644
No 10
>2obs_A Capsid protein; P domain, norovirus VA387, blood group trisaccharides type A, viral protein; HET: FUC GL0 A2G; 2.00A {Norovirus} PDB: 2obr_A* 2obt_A* 3bqj_A 3sjp_A 3sej_A 3skb_A 3sld_A* 3sln_A*
Probab=3.44 E-value=2.6e+02 Score=25.51 Aligned_cols=15 Identities=40% Similarity=0.720 Sum_probs=11.6
Q ss_pred eccccchhHHHHHHH
Q 022510 13 TVPQRFFCHFYVVAV 27 (296)
Q Consensus 13 ~VPk~wF~HFYi~~~ 27 (296)
.+|+-|.+|||--+.
T Consensus 239 LLPqE~v~HF~~e~a 253 (327)
T 2obs_A 239 LLPQEWVQHFYQEAA 253 (327)
T ss_dssp SSCHHHHHHHHHHCC
T ss_pred cCCHHHHHhhhcccC
Confidence 579999999986443
Done!