Query 022510
Match_columns 296
No_of_seqs 194 out of 917
Neff 6.8
Searched_HMMs 13730
Date Mon Mar 25 06:40:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022510.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/022510hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d3e46a1 a.5.2.1 (A:157-198) Ub 5.0 85 0.0062 17.9 0.4 12 229-240 1-12 (42)
2 d1oyia_ a.4.5.19 (A:) dsRNA-bi 4.5 78 0.0057 19.4 -0.1 9 12-20 52-60 (62)
3 d1vmba_ d.58.14.1 (A:) Ribosom 4.2 1.4E+02 0.01 20.3 1.2 13 100-112 2-14 (107)
4 d1rwza1 d.131.1.2 (A:1-122) Pr 3.2 97 0.0071 21.7 -0.6 14 11-24 48-61 (122)
5 d1tfra2 c.120.1.2 (A:12-180) T 3.2 1.4E+02 0.01 22.2 0.3 15 276-290 67-81 (169)
6 d1xo1a2 c.120.1.2 (A:19-185) T 3.1 1.9E+02 0.014 21.2 1.1 16 275-290 55-70 (167)
7 d1gt0d_ a.21.1.1 (D:) Sox-2 {M 2.8 4.4E+02 0.032 16.4 2.7 18 268-285 54-71 (80)
8 d1s95a_ d.159.1.3 (A:) Serine/ 2.7 2.9E+02 0.021 22.8 1.9 23 215-237 256-279 (324)
9 d1plqa1 d.131.1.2 (A:1-126) Pr 2.5 1.3E+02 0.0093 21.0 -0.6 12 11-22 49-60 (126)
10 g1n13.1 d.155.1.2 (A:,B:) Argi 2.5 2E+02 0.014 21.5 0.5 12 8-19 1-13 (159)
No 1
>d3e46a1 a.5.2.1 (A:157-198) Ubiquitin-conjugating enzyme E2-25 kDa, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.00 E-value=85 Score=17.86 Aligned_cols=12 Identities=42% Similarity=0.564 Sum_probs=8.7
Q ss_pred ecccchhHHHHH
Q 022510 229 VSCPHYLAEIVI 240 (296)
Q Consensus 229 vscPnY~~Eil~ 240 (296)
||+|.|+..|=-
T Consensus 1 vsspeyt~kidk 12 (42)
T d3e46a1 1 VSSPEYTKKIEN 12 (42)
T ss_dssp CCCHHHHHHHHH
T ss_pred CCchHHHHHHHH
Confidence 578888887643
No 2
>d1oyia_ a.4.5.19 (A:) dsRNA-binding protein E3 (E3L) {Vaccinia virus [TaxId: 10245]}
Probab=4.48 E-value=78 Score=19.37 Aligned_cols=9 Identities=33% Similarity=0.755 Sum_probs=7.1
Q ss_pred eeccccchh
Q 022510 12 FTVPQRFFC 20 (296)
Q Consensus 12 ~~VPk~wF~ 20 (296)
=++|.|||.
T Consensus 52 ~d~pprw~~ 60 (62)
T d1oyia_ 52 DDIPPRWFM 60 (62)
T ss_dssp SSSSCEEES
T ss_pred CCCCCcccc
Confidence 368999985
No 3
>d1vmba_ d.58.14.1 (A:) Ribosomal protein S6 {Thermotoga maritima [TaxId: 2336]}
Probab=4.20 E-value=1.4e+02 Score=20.31 Aligned_cols=13 Identities=15% Similarity=0.460 Sum_probs=10.5
Q ss_pred hhheeeeEEeecC
Q 022510 100 RRLIETIYTFQYS 112 (296)
Q Consensus 100 rRl~Et~fv~~fS 112 (296)
.|.||+.++.+..
T Consensus 2 ~R~YE~~~Il~p~ 14 (107)
T d1vmba_ 2 ERIYESMFIIAPN 14 (107)
T ss_dssp CEEEEEEEEECTT
T ss_pred CceeEEEEEECCC
Confidence 3899999997754
No 4
>d1rwza1 d.131.1.2 (A:1-122) Proliferating cell nuclear antigen (PCNA) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=3.17 E-value=97 Score=21.73 Aligned_cols=14 Identities=14% Similarity=0.380 Sum_probs=11.6
Q ss_pred eeeccccchhHHHH
Q 022510 11 KFTVPQRFFCHFYV 24 (296)
Q Consensus 11 ~~~VPk~wF~HFYi 24 (296)
.+..||.||.+|++
T Consensus 48 ~l~L~~~~F~~Y~~ 61 (122)
T d1rwza1 48 IVDIPKDSFEVYNI 61 (122)
T ss_dssp EEEEEGGGSSEEEE
T ss_pred EEEECcccCeEEec
Confidence 47889999998875
No 5
>d1tfra2 c.120.1.2 (A:12-180) T4 RNase H {Bacteriophage T4 [TaxId: 10665]}
Probab=3.17 E-value=1.4e+02 Score=22.23 Aligned_cols=15 Identities=27% Similarity=0.253 Sum_probs=7.5
Q ss_pred HHHHhcCcCCCCcce
Q 022510 276 WYIRKFDNYPSNRYA 290 (296)
Q Consensus 276 wY~~~F~~yp~~R~a 290 (296)
|-++-|++|+.+|+.
T Consensus 67 ~R~~l~p~YKanR~~ 81 (169)
T d1tfra2 67 WRRDFAYYYKKNRGK 81 (169)
T ss_dssp GGGGTCTTTTC----
T ss_pred hhhhhHHHHhhCCCC
Confidence 445667888877764
No 6
>d1xo1a2 c.120.1.2 (A:19-185) T5 5'-exonuclease {Bacteriophage T5 [TaxId: 10726]}
Probab=3.13 E-value=1.9e+02 Score=21.22 Aligned_cols=16 Identities=19% Similarity=0.418 Sum_probs=8.5
Q ss_pred HHHHHhcCcCCCCcce
Q 022510 275 RWYIRKFDNYPSNRYA 290 (296)
Q Consensus 275 ~wY~~~F~~yp~~R~a 290 (296)
.|-++-|++|+.+|+.
T Consensus 55 ~~R~~l~p~YKanR~~ 70 (167)
T d1xo1a2 55 VFRLEHLPEYAGNRDE 70 (167)
T ss_dssp HHHHTTCTTCC-----
T ss_pred CcccccchhhhhcCCC
Confidence 4666778999998863
No 7
>d1gt0d_ a.21.1.1 (D:) Sox-2 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=2.76 E-value=4.4e+02 Score=16.41 Aligned_cols=18 Identities=11% Similarity=0.180 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHhcCcCC
Q 022510 268 FAAAETQRWYIRKFDNYP 285 (296)
Q Consensus 268 ~~A~~~h~wY~~~F~~yp 285 (296)
..|.+..+.|.+++++|.
T Consensus 54 ~~A~~~k~~y~~~~p~Yk 71 (80)
T d1gt0d_ 54 DEAKRLRALHMKEHPDYK 71 (80)
T ss_dssp HHHHHHHHHHHHHCTTCC
T ss_pred HHHHHHHHHHHHHCcccc
Confidence 456677778999999876
No 8
>d1s95a_ d.159.1.3 (A:) Serine/threonine protein phosphatase 5, PP5 {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.71 E-value=2.9e+02 Score=22.81 Aligned_cols=23 Identities=26% Similarity=0.645 Sum_probs=18.3
Q ss_pred Ccceeeeccc-ccceecccchhHH
Q 022510 215 IDEYVIPHGD-WFEIVSCPHYLAE 237 (296)
Q Consensus 215 ~~~y~iP~gg-lF~~vscPnY~~E 237 (296)
.++|+...+| +...-|+|||.++
T Consensus 256 ~~G~~~~~~~kviTvFSa~nY~~~ 279 (324)
T d1s95a_ 256 AEGYEVAHGGRCVTVFSAPNYCDQ 279 (324)
T ss_dssp TTSEEEEGGGTEEEECCCSSGGGT
T ss_pred cCceEEecCCcEEEEeCCCccCCC
Confidence 5668888755 8888999999864
No 9
>d1plqa1 d.131.1.2 (A:1-126) Proliferating cell nuclear antigen (PCNA) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=2.53 E-value=1.3e+02 Score=21.04 Aligned_cols=12 Identities=8% Similarity=0.285 Sum_probs=0.0
Q ss_pred eeeccccchhHH
Q 022510 11 KFTVPQRFFCHF 22 (296)
Q Consensus 11 ~~~VPk~wF~HF 22 (296)
.+..|+.||.+|
T Consensus 49 ~l~L~~~~F~~Y 60 (126)
T d1plqa1 49 SLEIGVEAFQEY 60 (126)
T ss_dssp EEEEEGGGSSEE
T ss_pred EEEECHHHCcee
No 10
>g1n13.1 d.155.1.2 (A:,B:) Arginine decarboxylase {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=2.49 E-value=2e+02 Score=21.50 Aligned_cols=12 Identities=25% Similarity=0.551 Sum_probs=0.0
Q ss_pred CCce-eeccccch
Q 022510 8 PKEK-FTVPQRFF 19 (296)
Q Consensus 8 ~~~~-~~VPk~wF 19 (296)
|.+. |+|||+.|
T Consensus 1 ~~~~~~~vP~~~f 13 (159)
T g1n13.1 1 PLHAYFKLPNTVS 13 (159)
T ss_dssp CCSCCCCCCCEEE
T ss_pred CCCCcccCCCEEE
Done!