Query 022511
Match_columns 296
No_of_seqs 145 out of 1378
Neff 9.7
Searched_HMMs 46136
Date Fri Mar 29 04:05:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022511.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022511hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00817 tpt Tpt phosphate/ph 100.0 8E-39 1.7E-43 278.7 25.6 278 2-280 16-297 (302)
2 PTZ00343 triose or hexose phos 100.0 2E-35 4.2E-40 261.2 27.3 274 3-277 64-349 (350)
3 KOG1444 Nucleotide-sugar trans 100.0 1.7E-35 3.6E-40 246.6 20.5 282 2-285 26-309 (314)
4 KOG1441 Glucose-6-phosphate/ph 100.0 1.2E-34 2.7E-39 246.8 19.6 277 2-282 31-313 (316)
5 PLN00411 nodulin MtN21 family 100.0 1.2E-30 2.5E-35 230.0 26.3 275 3-284 28-336 (358)
6 PF08449 UAA: UAA transporter 100.0 1.7E-28 3.7E-33 213.6 25.8 259 16-281 31-302 (303)
7 PRK11272 putative DMT superfam 100.0 2.8E-27 6.1E-32 205.0 29.3 259 5-278 25-287 (292)
8 PRK11689 aromatic amino acid e 100.0 3E-27 6.5E-32 205.0 26.0 253 5-277 21-288 (295)
9 TIGR00950 2A78 Carboxylate/Ami 100.0 6.6E-27 1.4E-31 199.6 26.1 252 4-271 5-259 (260)
10 PRK15430 putative chlorampheni 100.0 3.2E-26 7E-31 198.7 27.4 259 7-280 27-289 (296)
11 PRK11453 O-acetylserine/cystei 100.0 5.8E-26 1.3E-30 197.4 28.4 263 5-279 21-290 (299)
12 PRK10532 threonine and homoser 100.0 8.9E-26 1.9E-30 195.6 27.3 251 5-278 29-283 (293)
13 COG5070 VRG4 Nucleotide-sugar 100.0 1.6E-27 3.4E-32 187.7 14.7 274 2-283 20-303 (309)
14 KOG1442 GDP-fucose transporter 99.9 1.8E-28 4E-33 198.6 4.7 286 1-289 41-340 (347)
15 PF06027 DUF914: Eukaryotic pr 99.9 5E-25 1.1E-29 190.5 21.4 267 6-280 31-309 (334)
16 KOG1443 Predicted integral mem 99.9 1.2E-24 2.6E-29 179.4 12.1 274 2-276 30-315 (349)
17 TIGR03340 phn_DUF6 phosphonate 99.9 1.9E-22 4.1E-27 173.9 21.9 244 21-273 31-280 (281)
18 KOG1581 UDP-galactose transpor 99.9 2.1E-21 4.5E-26 160.4 20.9 262 13-280 47-317 (327)
19 KOG1580 UDP-galactose transpor 99.9 9.2E-23 2E-27 162.2 12.4 257 14-276 50-313 (337)
20 TIGR00688 rarD rarD protein. T 99.9 9.6E-21 2.1E-25 161.2 23.4 229 5-249 19-254 (256)
21 COG0697 RhaT Permeases of the 99.9 4E-20 8.7E-25 159.9 27.4 247 17-277 35-288 (292)
22 COG5006 rhtA Threonine/homoser 99.8 5.3E-19 1.2E-23 142.5 20.5 239 17-276 40-282 (292)
23 KOG4510 Permease of the drug/m 99.8 2.5E-22 5.4E-27 162.6 -1.2 253 17-281 64-330 (346)
24 KOG1583 UDP-N-acetylglucosamin 99.8 1.5E-19 3.2E-24 147.3 8.9 256 20-282 36-320 (330)
25 COG2962 RarD Predicted permeas 99.8 1.9E-16 4.2E-21 131.1 25.5 254 17-284 34-291 (293)
26 PF04142 Nuc_sug_transp: Nucle 99.8 1.5E-17 3.3E-22 139.2 18.8 214 47-266 13-243 (244)
27 KOG2765 Predicted membrane pro 99.8 3.4E-18 7.4E-23 145.2 12.4 227 49-280 157-394 (416)
28 KOG2234 Predicted UDP-galactos 99.8 2.5E-16 5.4E-21 134.0 23.1 227 48-280 89-326 (345)
29 TIGR00776 RhaT RhaT L-rhamnose 99.8 1.7E-16 3.6E-21 137.1 20.8 234 24-276 33-288 (290)
30 KOG1582 UDP-galactose transpor 99.8 1.5E-17 3.2E-22 135.3 12.4 257 16-278 74-334 (367)
31 PF03151 TPT: Triose-phosphate 99.7 1.5E-16 3.1E-21 124.8 14.6 144 132-276 1-153 (153)
32 KOG3912 Predicted integral mem 99.7 3.2E-16 7E-21 128.2 16.6 223 52-277 87-335 (372)
33 TIGR00803 nst UDP-galactose tr 99.4 2.9E-12 6.3E-17 106.7 9.5 194 75-274 2-222 (222)
34 KOG2766 Predicted membrane pro 99.4 6.4E-14 1.4E-18 113.4 -0.9 257 5-277 35-300 (336)
35 COG2510 Predicted membrane pro 99.3 3E-11 6.5E-16 87.8 9.0 134 133-275 5-138 (140)
36 PF00892 EamA: EamA-like trans 99.3 2.1E-11 4.6E-16 91.7 8.8 117 4-122 7-125 (126)
37 PF13536 EmrE: Multidrug resis 99.2 5E-11 1.1E-15 88.3 9.0 106 22-128 2-111 (113)
38 PF00892 EamA: EamA-like trans 99.2 2.7E-10 5.9E-15 85.7 10.0 124 141-275 1-125 (126)
39 PF06800 Sugar_transport: Suga 99.0 2E-07 4.4E-12 78.3 21.5 209 49-273 43-268 (269)
40 KOG4314 Predicted carbohydrate 99.0 4.6E-10 1E-14 87.9 5.0 219 51-280 53-280 (290)
41 PRK15430 putative chlorampheni 99.0 2.3E-08 5E-13 86.9 16.1 142 126-275 3-144 (296)
42 TIGR03340 phn_DUF6 phosphonate 98.9 4E-08 8.6E-13 84.8 14.2 133 133-276 3-135 (281)
43 TIGR00688 rarD rarD protein. T 98.9 8.4E-08 1.8E-12 81.6 15.7 140 131-275 2-141 (256)
44 COG2510 Predicted membrane pro 98.9 4.7E-09 1E-13 76.4 5.5 116 6-122 21-138 (140)
45 PLN00411 nodulin MtN21 family 98.7 6.1E-07 1.3E-11 79.7 14.5 138 131-276 13-156 (358)
46 PF05653 Mg_trans_NIPA: Magnes 98.6 5.7E-07 1.2E-11 77.8 12.5 205 59-278 58-294 (300)
47 TIGR00950 2A78 Carboxylate/Ami 98.6 4.4E-07 9.5E-12 77.3 11.3 113 5-118 145-259 (260)
48 PRK15051 4-amino-4-deoxy-L-ara 98.6 4.1E-07 8.9E-12 66.8 8.7 65 59-123 45-109 (111)
49 PRK02971 4-amino-4-deoxy-L-ara 98.4 1.2E-05 2.6E-10 60.5 12.0 119 131-277 2-123 (129)
50 PTZ00343 triose or hexose phos 98.3 3.5E-05 7.7E-10 68.6 15.3 138 129-276 47-186 (350)
51 PRK11272 putative DMT superfam 98.3 5.8E-05 1.3E-09 65.5 16.2 130 133-276 10-141 (292)
52 TIGR00817 tpt Tpt phosphate/ph 98.3 3.6E-05 7.7E-10 67.2 14.9 130 136-275 7-136 (302)
53 PRK10532 threonine and homoser 98.2 1.5E-05 3.2E-10 69.2 11.6 115 6-123 166-281 (293)
54 PF13536 EmrE: Multidrug resis 98.2 2.7E-05 5.9E-10 57.5 11.4 71 206-278 37-108 (113)
55 COG2962 RarD Predicted permeas 98.2 4.5E-05 9.8E-10 64.1 13.1 141 128-276 4-144 (293)
56 PRK13499 rhamnose-proton sympo 98.2 0.0025 5.5E-08 56.0 23.4 225 46-276 68-341 (345)
57 PRK11689 aromatic amino acid e 98.1 9E-05 1.9E-09 64.4 14.2 130 131-276 4-137 (295)
58 PRK11453 O-acetylserine/cystei 98.1 0.00013 2.8E-09 63.5 13.9 124 134-276 7-132 (299)
59 TIGR00776 RhaT RhaT L-rhamnose 98.0 6.4E-05 1.4E-09 65.1 11.5 132 132-278 2-138 (290)
60 KOG2922 Uncharacterized conser 98.0 3.4E-05 7.4E-10 65.6 9.0 216 52-281 65-311 (335)
61 PF08449 UAA: UAA transporter 98.0 0.00018 4E-09 62.7 13.1 131 142-283 11-143 (303)
62 PRK02971 4-amino-4-deoxy-L-ara 98.0 5.2E-05 1.1E-09 57.1 8.3 71 55-125 51-124 (129)
63 PF06027 DUF914: Eukaryotic pr 97.9 0.00034 7.4E-09 61.3 12.8 141 130-278 12-153 (334)
64 PRK15051 4-amino-4-deoxy-L-ara 97.8 0.00015 3.3E-09 53.2 8.6 63 212-275 45-108 (111)
65 PF04657 DUF606: Protein of un 97.8 0.0011 2.4E-08 50.6 13.7 131 133-272 3-137 (138)
66 PRK10452 multidrug efflux syst 97.8 0.00025 5.4E-09 52.5 8.9 71 53-123 32-103 (120)
67 COG0697 RhaT Permeases of the 97.7 0.0016 3.5E-08 55.9 14.7 140 130-279 6-146 (292)
68 PRK09541 emrE multidrug efflux 97.7 0.00039 8.4E-09 50.8 9.1 70 54-123 33-103 (110)
69 PRK11431 multidrug efflux syst 97.7 0.00052 1.1E-08 49.6 9.1 70 53-122 31-101 (105)
70 PF03151 TPT: Triose-phosphate 97.7 0.00055 1.2E-08 53.2 10.0 116 6-121 18-151 (153)
71 COG2076 EmrE Membrane transpor 97.7 0.00043 9.4E-09 49.5 8.3 72 52-123 31-103 (106)
72 PRK10650 multidrug efflux syst 97.6 0.0011 2.5E-08 48.1 10.0 69 53-121 37-106 (109)
73 PRK13499 rhamnose-proton sympo 97.6 0.0014 3.1E-08 57.6 12.3 137 130-277 6-154 (345)
74 PF04142 Nuc_sug_transp: Nucle 97.5 0.00031 6.8E-09 59.1 6.4 81 199-280 13-93 (244)
75 PRK10452 multidrug efflux syst 97.5 0.00059 1.3E-08 50.5 7.0 60 218-278 45-105 (120)
76 COG4975 GlcU Putative glucose 97.4 7.3E-05 1.6E-09 61.2 1.4 217 44-276 52-285 (288)
77 COG5006 rhtA Threonine/homoser 97.3 0.0022 4.7E-08 53.0 8.8 99 21-120 180-279 (292)
78 PF00893 Multi_Drug_Res: Small 97.2 0.0012 2.6E-08 46.7 5.9 60 54-113 32-92 (93)
79 PF06800 Sugar_transport: Suga 97.1 0.0059 1.3E-07 51.7 10.0 81 200-281 42-127 (269)
80 PRK09541 emrE multidrug efflux 97.1 0.0034 7.4E-08 45.8 7.5 57 220-277 47-104 (110)
81 PF05653 Mg_trans_NIPA: Magnes 97.0 0.0013 2.8E-08 57.1 5.9 120 128-277 4-123 (300)
82 KOG4510 Permease of the drug/m 97.0 3.9E-05 8.5E-10 63.5 -3.7 134 131-278 38-171 (346)
83 COG2076 EmrE Membrane transpor 96.7 0.012 2.5E-07 42.3 7.5 57 220-277 47-104 (106)
84 PRK10650 multidrug efflux syst 96.6 0.017 3.7E-07 42.0 8.1 57 218-275 50-107 (109)
85 KOG2234 Predicted UDP-galactos 96.6 0.087 1.9E-06 46.0 13.3 142 134-276 18-164 (345)
86 PRK11431 multidrug efflux syst 96.6 0.016 3.4E-07 41.9 7.6 58 218-276 44-102 (105)
87 PF07857 DUF1632: CEO family ( 96.5 0.0045 9.8E-08 52.1 5.1 133 132-281 1-139 (254)
88 COG3238 Uncharacterized protei 96.4 0.14 3.1E-06 39.3 11.9 138 130-275 4-145 (150)
89 PF04657 DUF606: Protein of un 96.2 0.062 1.3E-06 41.0 9.3 113 7-120 20-138 (138)
90 PF10639 UPF0546: Uncharacteri 95.6 0.026 5.6E-07 41.2 4.7 62 60-121 50-112 (113)
91 PF00893 Multi_Drug_Res: Small 94.9 0.074 1.6E-06 37.6 5.3 54 213-267 38-93 (93)
92 COG4975 GlcU Putative glucose 94.5 0.065 1.4E-06 44.3 4.5 130 132-277 3-137 (288)
93 KOG2765 Predicted membrane pro 94.3 0.053 1.2E-06 47.5 3.9 79 202-281 158-236 (416)
94 TIGR00803 nst UDP-galactose tr 94.2 0.098 2.1E-06 43.3 5.3 67 54-120 155-221 (222)
95 KOG1581 UDP-galactose transpor 94.1 0.098 2.1E-06 44.7 5.0 75 46-120 236-310 (327)
96 PF06379 RhaT: L-rhamnose-prot 93.1 3.9 8.5E-05 35.9 13.1 141 130-280 6-157 (344)
97 COG3238 Uncharacterized protei 92.5 1.9 4.1E-05 33.2 9.3 114 7-121 24-144 (150)
98 KOG1444 Nucleotide-sugar trans 91.8 5 0.00011 34.8 12.0 136 131-276 12-149 (314)
99 PF05297 Herpes_LMP1: Herpesvi 91.2 0.062 1.3E-06 45.2 0.0 98 72-170 44-145 (381)
100 KOG4314 Predicted carbohydrate 90.2 0.13 2.9E-06 41.1 1.1 63 214-277 64-126 (290)
101 PF11044 TMEMspv1-c74-12: Plec 90.0 0.53 1.1E-05 27.5 3.1 39 256-294 2-46 (49)
102 KOG1580 UDP-galactose transpor 89.8 0.33 7.2E-06 40.0 3.1 73 50-122 240-312 (337)
103 KOG2922 Uncharacterized conser 89.8 0.052 1.1E-06 46.7 -1.6 125 128-282 18-142 (335)
104 KOG1441 Glucose-6-phosphate/ph 87.4 6.5 0.00014 34.4 9.6 129 141-277 27-178 (316)
105 COG5070 VRG4 Nucleotide-sugar 86.8 1.6 3.4E-05 35.9 5.1 76 47-122 220-295 (309)
106 PF10639 UPF0546: Uncharacteri 83.2 2.1 4.5E-05 31.3 3.9 52 221-273 59-111 (113)
107 KOG3912 Predicted integral mem 78.2 9.3 0.0002 32.7 6.6 58 219-277 102-159 (372)
108 KOG2766 Predicted membrane pro 77.2 0.14 3.1E-06 42.7 -4.2 135 130-278 17-152 (336)
109 PRK02237 hypothetical protein; 71.6 19 0.00041 26.0 5.9 46 230-276 60-105 (109)
110 PF02694 UPF0060: Uncharacteri 68.1 20 0.00043 25.8 5.4 46 230-276 58-103 (107)
111 PF06379 RhaT: L-rhamnose-prot 65.2 1E+02 0.0022 27.4 21.1 252 23-276 40-340 (344)
112 PRK02237 hypothetical protein; 64.1 52 0.0011 23.8 6.9 37 87-123 69-105 (109)
113 PF04342 DUF486: Protein of un 64.0 31 0.00067 24.8 5.7 60 61-120 45-105 (108)
114 PF14880 COX14: Cytochrome oxi 60.1 6.5 0.00014 25.0 1.6 27 255-281 15-41 (59)
115 TIGR02865 spore_II_E stage II 59.6 2E+02 0.0042 28.9 16.3 43 79-121 12-54 (764)
116 PF07444 Ycf66_N: Ycf66 protei 58.6 14 0.00029 25.5 3.0 27 255-281 4-30 (84)
117 PF02694 UPF0060: Uncharacteri 56.4 13 0.00029 26.7 2.8 38 86-123 66-103 (107)
118 PF04342 DUF486: Protein of un 56.3 10 0.00022 27.1 2.2 29 244-273 77-105 (108)
119 PF06946 Phage_holin_5: Phage 55.7 69 0.0015 22.5 6.9 59 221-279 22-83 (93)
120 COG3086 RseC Positive regulato 53.8 27 0.00059 26.6 4.2 26 226-251 71-96 (150)
121 TIGR00905 2A0302 transporter, 50.6 2.1E+02 0.0046 26.5 15.7 23 259-281 417-439 (473)
122 KOG4831 Unnamed protein [Funct 47.3 48 0.001 23.9 4.3 60 61-120 62-122 (125)
123 TIGR01167 LPXTG_anchor LPXTG-m 47.0 17 0.00038 19.8 1.8 18 253-270 7-24 (34)
124 KOG1582 UDP-galactose transpor 40.9 1.8E+02 0.0039 25.1 7.5 54 73-126 282-335 (367)
125 PF04246 RseC_MucC: Positive r 39.5 51 0.0011 24.8 3.9 24 228-251 66-89 (135)
126 PRK12437 prolipoprotein diacyl 39.4 32 0.00069 29.5 3.1 23 256-278 235-257 (269)
127 PRK01637 hypothetical protein; 38.3 94 0.002 26.8 5.9 22 257-278 247-268 (286)
128 COG5336 Uncharacterized protei 36.7 1E+02 0.0022 22.3 4.7 38 239-276 55-93 (116)
129 PRK02463 OxaA-like protein pre 35.7 1.5E+02 0.0033 25.9 6.7 40 234-275 209-248 (307)
130 COG1742 Uncharacterized conser 34.3 33 0.00071 24.6 1.9 37 88-124 69-105 (109)
131 TIGR03810 arg_ornith_anti argi 34.2 3.8E+02 0.0083 24.8 14.7 23 258-280 411-433 (468)
132 COG1971 Predicted membrane pro 32.5 62 0.0014 26.0 3.5 44 229-273 40-84 (190)
133 PLN02776 prenyltransferase 30.9 3.9E+02 0.0084 23.8 17.5 47 98-145 118-165 (341)
134 PRK10666 ammonium transporter; 30.8 4.4E+02 0.0094 24.4 17.1 79 99-179 274-354 (428)
135 PF01102 Glycophorin_A: Glycop 29.9 57 0.0012 24.2 2.7 10 273-282 85-94 (122)
136 PF05961 Chordopox_A13L: Chord 29.0 93 0.002 20.3 3.2 22 259-280 5-26 (68)
137 PF05977 MFS_3: Transmembrane 27.6 5.4E+02 0.012 24.4 13.3 25 225-249 342-366 (524)
138 PRK10862 SoxR reducing system 27.0 97 0.0021 24.0 3.7 19 230-248 75-93 (154)
139 PRK09579 multidrug efflux prot 26.0 7.7E+02 0.017 25.7 11.0 19 167-185 950-968 (1017)
140 PF03739 YjgP_YjgQ: Predicted 25.6 4.6E+02 0.0099 23.0 8.7 61 109-169 281-341 (354)
141 KOG1443 Predicted integral mem 25.1 2.3E+02 0.0049 24.9 5.7 50 72-121 264-313 (349)
142 PF15102 TMEM154: TMEM154 prot 24.6 35 0.00075 26.1 0.8 22 261-282 66-87 (146)
143 PF15471 TMEM171: Transmembran 24.6 40 0.00086 28.6 1.2 24 258-281 161-184 (319)
144 PRK00052 prolipoprotein diacyl 24.0 95 0.0021 26.5 3.5 22 256-277 237-258 (269)
145 PF04995 CcmD: Heme exporter p 23.6 90 0.002 18.5 2.3 21 260-280 10-30 (46)
146 PRK10189 MATE family multidrug 23.1 6.2E+02 0.013 23.6 12.4 27 130-156 303-329 (478)
147 TIGR02840 spore_YtaF putative 22.3 1.5E+02 0.0033 24.2 4.2 46 227-274 31-79 (206)
148 PRK15120 lipopolysaccharide AB 21.8 5.7E+02 0.012 22.7 8.2 64 108-171 274-337 (366)
149 COG1742 Uncharacterized conser 21.4 3.2E+02 0.0069 19.7 5.0 44 232-276 61-104 (109)
150 PF07168 Ureide_permease: Urei 21.3 77 0.0017 27.6 2.3 133 137-275 2-145 (336)
151 TIGR00544 lgt prolipoprotein d 21.3 1.1E+02 0.0023 26.4 3.2 22 256-277 246-267 (278)
152 PF03729 DUF308: Short repeat 21.0 2.3E+02 0.005 17.8 6.4 27 109-135 2-28 (72)
153 PRK06638 NADH:ubiquinone oxido 20.9 4.5E+02 0.0098 21.2 10.7 47 133-183 32-78 (198)
154 PF01350 Flavi_NS4A: Flaviviru 20.5 4E+02 0.0087 20.4 6.5 50 221-275 66-115 (144)
155 TIGR03144 cytochr_II_ccsB cyto 20.4 5.1E+02 0.011 21.6 17.0 24 130-153 101-124 (243)
156 PRK15127 multidrug efflux syst 20.3 1E+03 0.022 25.0 11.1 21 102-122 896-916 (1049)
157 KOG1583 UDP-N-acetylglucosamin 20.2 70 0.0015 27.5 1.8 44 79-122 270-313 (330)
158 PRK11469 hypothetical protein; 20.0 1.7E+02 0.0038 23.5 4.0 44 229-273 40-84 (188)
No 1
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=100.00 E-value=8e-39 Score=278.72 Aligned_cols=278 Identities=20% Similarity=0.183 Sum_probs=228.5
Q ss_pred eeeeeeHHHHhcCCCchHHHHHHHHHHHHHHHHHHhcCCccccccChhhhhHHHHHHHHHHHHHHHHhhhhcccchhHHH
Q 022511 2 AMVFINKAVIMQYAHSMTLLTLQQLATALLIQAGRQMGYTKSKAIDLMTAKKLLPVSLFYNANVAFALASLKGVNIPMYI 81 (296)
Q Consensus 2 ~~~~~nK~~l~~~~~p~~l~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~s~~~ 81 (296)
+.+++||++++++++|..+++.|+.++.+.+.+....+..++++.++++++..++.|++++.+..++|.+++++++++++
T Consensus 16 ~~~~~NK~~l~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~s~s~~~ 95 (302)
T TIGR00817 16 YFNIYNKKLLNVFPYPYFKTLISLAVGSLYCLLSWSSGLPKRLKISSALLKLLLPVAIVHTIGHVTSNVSLSKVAVSFTH 95 (302)
T ss_pred HHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHH
Confidence 45789999999999999999999999988776664333344456788899999999999999999999999999999999
Q ss_pred HHHhhHHHHHHHHHHHhcCccCCccchhhhhhhhhhhHhhhcCCcccchhHHHHHHHHHHHHHHHHHHHHHhccCCCCCH
Q 022511 82 AIKRLTPLAVLVAGFFSGKGKPTTQVTLSVLLTATGCVIAALGDFSFDLSGYSMALTSVFFQTMYLVLVEKSGAEDGLSS 161 (296)
Q Consensus 82 ~l~~~~pv~~~l~~~~~~~e~~~~~~~~~i~l~~~Gv~l~~~~~~~~~~~G~~~~l~s~~~~a~~~v~~k~~~~~~~~~~ 161 (296)
+++++.|+++++++++++|||++++++.+++++++|+++...++.+++..|+++++++++++++|.++.||..++++.|+
T Consensus 96 li~~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~ 175 (302)
T TIGR00817 96 TIKAMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALASDTELSFNWAGFLSAMISNITFVSRNIFSKKAMTIKSLDK 175 (302)
T ss_pred HHHhcchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhhcCCcccccHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCc
Confidence 99999999999999999999999999999999999999877666677888999999999999999999999887445699
Q ss_pred HHHHHHHhhhHHHHHHHHHHHhCCchhhhhhhhc---ccCchhHHHHHHHHHH-HHHHHHHHHHHHHhccChhHHHHHhh
Q 022511 162 VEIMFYNSFLSLPFLVFLIIVTGEFPGSLSLLFS---KSNSFSFLVILILSLV-MGIILNFTMFLCTIVNSALTTTIVGV 237 (296)
Q Consensus 162 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~sa~~~s~~~~ 237 (296)
.+.+.|++..+.+.+.|.....++.........+ .......+...+..+. .....+...+.+++++||+++++.++
T Consensus 176 ~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~sa~t~sv~~~ 255 (302)
T TIGR00817 176 TNLYAYISIMSLFLLSPPAFITEGPPFLPHGFMQAISGVNVTKIYTVSLVAAMGFFHFYQQVAFMLLGRVSPLTHSVGNC 255 (302)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHHHHHHccCCchHHHHHhh
Confidence 9999999999999999988765432211110001 0111122322333333 23333356678899999999999999
Q ss_pred hhHHHHHHhhheeeCCcccchhhHHHHHHHHHHhHHHHHHHHh
Q 022511 238 LKGVGSTTLGFVVLGGVQVRALNVTGLLINTAGGVWYSYAKYQ 280 (296)
Q Consensus 238 l~pi~~~~~~~~~~~e~~~t~~~~~G~~lil~g~~~~~~~~~~ 280 (296)
++|++++++|++++|| ++|..+++|+++++.|+.+|++.|.+
T Consensus 256 l~pv~~~~~~~~~lge-~lt~~~~~G~~lil~Gv~l~~~~k~~ 297 (302)
T TIGR00817 256 MKRVVVIVVSILFFGT-KISPQQVFGTGIAIAGVFLYSRVKAQ 297 (302)
T ss_pred hhhhheeeeehhhcCC-CCchhHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999985 99999999999999999999876543
No 2
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=100.00 E-value=2e-35 Score=261.20 Aligned_cols=274 Identities=17% Similarity=0.150 Sum_probs=227.4
Q ss_pred eeeeeHHHHhcCCCchHHHHHHHHHHHHHHHHHHhcCCccccccC--hhhhhHHHHHHHHHHHHHHHHhhhhcccchhHH
Q 022511 3 MVFINKAVIMQYAHSMTLLTLQQLATALLIQAGRQMGYTKSKAID--LMTAKKLLPVSLFYNANVAFALASLKGVNIPMY 80 (296)
Q Consensus 3 ~~~~nK~~l~~~~~p~~l~~~r~~~~~~~l~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~~~~al~~~~~s~~ 80 (296)
.+++||++++++++|.+++++|++++.++...+...+.++.++.+ +++++..++.|+++.......+.|+++++++++
T Consensus 64 ~~~~nK~vl~~~~~P~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~llp~gl~~~~~~~~~~~sl~~~svs~~ 143 (350)
T PTZ00343 64 YVVDNKLALNMLPLPWTISSLQLFVGWLFALLYWATGFRKIPRIKSLKLFLKNFLPQGLCHLFVHFGAVISMGLGAVSFT 143 (350)
T ss_pred HHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHH
Confidence 467899999999999999999999998776655544433334442 457789999999988777778899999999999
Q ss_pred HHHHhhHHHHHHHHHHHhcCccCCccchhhhhhhhhhhHhhhcCCcccchhHHHHHHHHHHHHHHHHHHHHHhccCC---
Q 022511 81 IAIKRLTPLAVLVAGFFSGKGKPTTQVTLSVLLTATGCVIAALGDFSFDLSGYSMALTSVFFQTMYLVLVEKSGAED--- 157 (296)
Q Consensus 81 ~~l~~~~pv~~~l~~~~~~~e~~~~~~~~~i~l~~~Gv~l~~~~~~~~~~~G~~~~l~s~~~~a~~~v~~k~~~~~~--- 157 (296)
++++++.|+++++++++++|||++++++.+++++++|+++.+.+|.++++.|++++++|++++|+|+++.||..+++
T Consensus 144 ~iika~~Pvft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~~~~~~~~~~G~~~~l~s~~~~a~~~i~~k~~~~~~~~~ 223 (350)
T PTZ00343 144 HVVKAAEPVFTALLSILFLKQFLNLYAYLSLIPIVGGVALASVKELHFTWLAFWCAMLSNLGSSLRSIFAKKTMKNKSEI 223 (350)
T ss_pred HHHHHhhHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHheecccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 99999999999999999999999999999999999999999888888888999999999999999999999988754
Q ss_pred --CCCHHHHHHHHhhhHHHHHHHHHHHhCCch-h-hhhh---hhcccCchhHHHHHHHHHHHHHHHHHHHHHHHhccChh
Q 022511 158 --GLSSVEIMFYNSFLSLPFLVFLIIVTGEFP-G-SLSL---LFSKSNSFSFLVILILSLVMGIILNFTMFLCTIVNSAL 230 (296)
Q Consensus 158 --~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~-~~~~---~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~sa~ 230 (296)
+.++.+...++.+.+.++++|.....+... . .... ....+.....+..++.+++..+..+.+.+.++++++|.
T Consensus 224 ~~~~~~~~~~~~~~~~~~l~~lp~~~~~e~~~~~~~~~~~~~~~~~~~~~~~l~~i~~s~l~~~l~n~~~f~~l~~~s~~ 303 (350)
T PTZ00343 224 GENLTASNIYMLLTLIASLISLPLVLFFEGKKWVPVWTNYTANMTNYTKGIIIFKIFFSGVWYYLYNEVAFYCLGKVNQV 303 (350)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhccchh
Confidence 256777777888999999999877543211 1 1100 00111112334456677778888888888999999999
Q ss_pred HHHHHhhhhHHHHHHhhheeeCCcccchhhHHHHHHHHHHhHHHHHH
Q 022511 231 TTTIVGVLKGVGSTTLGFVVLGGVQVRALNVTGLLINTAGGVWYSYA 277 (296)
Q Consensus 231 ~~s~~~~l~pi~~~~~~~~~~~e~~~t~~~~~G~~lil~g~~~~~~~ 277 (296)
+.++.+++||+++++.|++++|| ++|+.+++|.++++.|+.+|+..
T Consensus 304 t~sv~~~lk~V~~iv~s~l~~ge-~lt~~~~iG~~lii~Gv~lYs~~ 349 (350)
T PTZ00343 304 THAVANTLKRVVIIVSSIIIFQT-QVTLLGYLGMAVAILGALLYSLF 349 (350)
T ss_pred HHHHHHHHHHHHHhhhhHHHhCC-CCchHhHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999985 99999999999999999999875
No 3
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.7e-35 Score=246.61 Aligned_cols=282 Identities=40% Similarity=0.591 Sum_probs=255.9
Q ss_pred eeeeeeHHHHhcCCCchHHHH--HHHHHHHHHHHHHHhcCCccccccChhhhhHHHHHHHHHHHHHHHHhhhhcccchhH
Q 022511 2 AMVFINKAVIMQYAHSMTLLT--LQQLATALLIQAGRQMGYTKSKAIDLMTAKKLLPVSLFYNANVAFALASLKGVNIPM 79 (296)
Q Consensus 2 ~~~~~nK~~l~~~~~p~~l~~--~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~s~ 79 (296)
.|++.||+++++|+||..+.. .|.+++.+.+......|..++|+++++..|+++|.++++.+.++.+..+++|+|++.
T Consensus 26 lm~vvNK~vls~y~f~~~l~l~~~Q~l~s~~~v~~lk~~~lv~~~~l~~~~~kk~~P~~~lf~~~i~t~~~slk~lnVpm 105 (314)
T KOG1444|consen 26 LMTVVNKIVLSSYNFPMGLLLMLLQSLASVLVVLVLKRLGLVNFRPLDLRTAKKWFPVSLLFVGMLFTGSKSLKYLNVPM 105 (314)
T ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHhceeecCCcChHHHHHHccHHHHHHHHHHHccccccccCchH
Confidence 478999999999999998555 999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhHHHHHHHHHHHhcCccCCccchhhhhhhhhhhHhhhcCCcccchhHHHHHHHHHHHHHHHHHHHHHhccCCCC
Q 022511 80 YIAIKRLTPLAVLVAGFFSGKGKPTTQVTLSVLLTATGCVIAALGDFSFDLSGYSMALTSVFFQTMYLVLVEKSGAEDGL 159 (296)
Q Consensus 80 ~~~l~~~~pv~~~l~~~~~~~e~~~~~~~~~i~l~~~Gv~l~~~~~~~~~~~G~~~~l~s~~~~a~~~v~~k~~~~~~~~ 159 (296)
+++++..+|+.+++.+..++|.|++...|.++..+.+|......+|.+++..|+.|++...++.+.+.++.|+..+..+.
T Consensus 106 ~tv~kn~tii~~ai~E~lf~~~~~~~~v~~Sv~~m~~~s~~~~~~d~sf~~~gY~w~~~n~~~~a~~~v~~kk~vd~~~l 185 (314)
T KOG1444|consen 106 FTVFKNLTIILTAIGEVLFFGKRPSNKVWASVFAMIIGSVAAAFTDLSFNLRGYSWALANCLTTAAFVVYVKKSVDSANL 185 (314)
T ss_pred HHHHhhchHHHHHHhHHhhcCcCchhhHHHHHHHHHHHHHhhccccceecchhHHHHHHHHHHHHHHHHHHHHhhccccc
Confidence 99999999999999999999999999999999999999999999999999899999999999999999999999988889
Q ss_pred CHHHHHHHHhhhHHHHHHHHHHHhCCchhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHhhhh
Q 022511 160 SSVEIMFYNSFLSLPFLVFLIIVTGEFPGSLSLLFSKSNSFSFLVILILSLVMGIILNFTMFLCTIVNSALTTTIVGVLK 239 (296)
Q Consensus 160 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~sa~~~s~~~~l~ 239 (296)
+.+++++|+++++.+.+.......||.. .....++.+.+...+..+.++|+++++.+++.++|.+..||++.++++...
T Consensus 186 ~~~~lv~yNnl~~L~~l~~~~~~~ge~~-~l~~~~~~~~~~~~~~~~~lScv~gf~isy~s~~ct~~~SAtT~tivG~~n 264 (314)
T KOG1444|consen 186 NKFGLVFYNNLLSLPPLLILSFITGELD-ALSLNFDNWSDSSVLVVMLLSCVMGFGISYTSFLCTRVNSATTTTIVGAKN 264 (314)
T ss_pred cceeEEeehhHHHHHHHHHHHHHhcchH-HHHhhcccccchhHHHHHHHHHHHHHHHHHHHHHHHhhccccceeehhhhh
Confidence 9999999999999999999999998855 333334556677889999999999999999999999999999999999555
Q ss_pred HHHHHHhhheeeCCcccchhhHHHHHHHHHHhHHHHHHHHhhhhcc
Q 022511 240 GVGSTTLGFVVLGGVQVRALNVTGLLINTAGGVWYSYAKYQQKKKK 285 (296)
Q Consensus 240 pi~~~~~~~~~~~e~~~t~~~~~G~~lil~g~~~~~~~~~~~~~~~ 285 (296)
...+. ++.+.+||++.++...+|..+.+.|.++|++.+.++++.+
T Consensus 265 ~l~t~-l~~ll~~d~~~~~~n~~gll~~~~ggv~Y~~~~~~~k~~~ 309 (314)
T KOG1444|consen 265 KLLTY-LGGLLFGDKPFTFLNVIGLLVGFFGGVLYSYATFRKKKQP 309 (314)
T ss_pred hHHHH-HHHHhcCCceechhhhHHHHHHhhhhhHHhhhhhhhccCC
Confidence 55555 5555555679999999999999999999999876554433
No 4
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=100.00 E-value=1.2e-34 Score=246.84 Aligned_cols=277 Identities=25% Similarity=0.365 Sum_probs=242.2
Q ss_pred eeeeeeHHHHh--cCCCchHHHHHHHHHHHHHHHHHHhcCCcccccc-ChhhhhHHHHHHHHHHHHHHHHhhhhcccchh
Q 022511 2 AMVFINKAVIM--QYAHSMTLLTLQQLATALLIQAGRQMGYTKSKAI-DLMTAKKLLPVSLFYNANVAFALASLKGVNIP 78 (296)
Q Consensus 2 ~~~~~nK~~l~--~~~~p~~l~~~r~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~s 78 (296)
+..++||++++ +|++|.+++..+...+.+........+..+.++. ++..++..++.|++++.+.+++|.|++++|++
T Consensus 31 ~~~~~nK~il~~~~f~~p~~lt~~~~~~~~l~~~v~~~l~~~~~~~~~~~~~~~~llpl~~~~~~~~v~~n~Sl~~v~Vs 110 (316)
T KOG1441|consen 31 GVIILNKYILSKYGFPFPITLTMLHLFCGALALLVIKVLKLVPPSKISSKLPLRTLLPLGLVFCISHVLGNVSLSYVPVS 110 (316)
T ss_pred eeEEeeHhhhccCCCCCccHHHHHHHHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHHHHHHHhcchhhhccchh
Confidence 56789999999 7899999999999999998888888776665554 35677899999999999999999999999999
Q ss_pred HHHHHHhhHHHHHHHHHHHhcCccCCccchhhhhhhhhhhHhhhcCCcccchhHHHHHHHHHHHHHHHHHHHHHhc--cC
Q 022511 79 MYIAIKRLTPLAVLVAGFFSGKGKPTTQVTLSVLLTATGCVIAALGDFSFDLSGYSMALTSVFFQTMYLVLVEKSG--AE 156 (296)
Q Consensus 79 ~~~~l~~~~pv~~~l~~~~~~~e~~~~~~~~~i~l~~~Gv~l~~~~~~~~~~~G~~~~l~s~~~~a~~~v~~k~~~--~~ 156 (296)
+++.++++.|+++.++++++.+|+++...+.+++....|+.+.+..|.++|+.|...++.+.+..+.++++.|+.+ |+
T Consensus 111 F~q~iKa~~P~~tvl~~~~~~~~~~s~~~~lsL~piv~GV~ias~~e~~fn~~G~i~a~~s~~~~al~~I~~~~ll~~~~ 190 (316)
T KOG1441|consen 111 FYQTIKALMPPFTVLLSVLLLGKTYSSMTYLSLLPIVFGVAIASVTELSFNLFGFISAMISNLAFALRNILSKKLLTSKG 190 (316)
T ss_pred HHHHHHhhcchhHHHHHHHHhCCCCcceEEEEEEEeeeeEEEeeeccccccHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999998 46
Q ss_pred CCCCHHHHHHHHhhhHHHHHH-HHHHHhCCchhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHH
Q 022511 157 DGLSSVEIMFYNSFLSLPFLV-FLIIVTGEFPGSLSLLFSKSNSFSFLVILILSLVMGIILNFTMFLCTIVNSALTTTIV 235 (296)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~sa~~~s~~ 235 (296)
++.|++++..|+.+++...++ |.....+.... . ......++...+..++.+ ++++..|...+.+++++||.|.++.
T Consensus 191 ~~~~~~~ll~y~ap~s~~~Ll~P~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~s-v~~f~~Nls~f~~ig~tSalT~~V~ 267 (316)
T KOG1441|consen 191 ESLNSMNLLYYTAPISLIFLLIPFLDYVEGNKF-V-GFLTAPWFVTFLILLLNS-VLAFLLNLSAFLVIGRTSALTYSVA 267 (316)
T ss_pred cccCchHHHHHhhhHHHHHHhcchHhhhcccce-e-eeeccccchhhHHHHHHH-HHHHHHHHHHHHHHcccCchhhhhh
Confidence 779999999999999999999 77665432221 0 111223334444444444 9999999999999999999999999
Q ss_pred hhhhHHHHHHhhheeeCCcccchhhHHHHHHHHHHhHHHHHHHHhhh
Q 022511 236 GVLKGVGSTTLGFVVLGGVQVRALNVTGLLINTAGGVWYSYAKYQQK 282 (296)
Q Consensus 236 ~~l~pi~~~~~~~~~~~e~~~t~~~~~G~~lil~g~~~~~~~~~~~~ 282 (296)
+.+|.++.+..|+++|+| +.|+.+..|+++.+.|+.+|++.|.+++
T Consensus 268 g~~K~~~vi~~s~~iF~~-pvt~~n~~G~~iai~Gv~~Y~~~k~~~~ 313 (316)
T KOG1441|consen 268 GHMKRIVVIVVSWLIFGN-PVTFLNALGYAIAILGVFLYSRAKLKEK 313 (316)
T ss_pred ccceEEEEEEeEeeeecC-CCchhhHHHHHHHHHHHHHHHHHhhhhh
Confidence 999999999999999996 9999999999999999999998876544
No 5
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=100.00 E-value=1.2e-30 Score=230.02 Aligned_cols=275 Identities=12% Similarity=0.114 Sum_probs=208.1
Q ss_pred eeeeeHHHHhcCCCchHHHHHHHHHHHHHHHHHHhcCC--ccccccChhhhhHHHHHHHHHHHHHHHHhhhhcccchhHH
Q 022511 3 MVFINKAVIMQYAHSMTLLTLQQLATALLIQAGRQMGY--TKSKAIDLMTAKKLLPVSLFYNANVAFALASLKGVNIPMY 80 (296)
Q Consensus 3 ~~~~nK~~l~~~~~p~~l~~~r~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~s~~ 80 (296)
+..+.|..+..--.|..+.++|+.++++++.++...++ ++.++.+++++......|++......+.+.+++++|++.+
T Consensus 28 ~~~~~k~a~~~G~~~~~~~~~R~~iA~l~Ll~~~~~~~~~~~~~~~~~~~~~~l~l~g~~g~~~~~~~~~gl~~tsa~~a 107 (358)
T PLN00411 28 ISTLFKVATSKGLNIYPFLGYSYLLASLLLLPSLFFTNRSRSLPPLSVSILSKIGLLGFLGSMYVITGYIGIEYSNPTLA 107 (358)
T ss_pred HHHHHHHHHHCCCCccHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHH
Confidence 45667888865445777999999999988877654322 2233445667777777887776666689999999999999
Q ss_pred HHHHhhHHHHHHHHHHHh------cCccCCccchhhhhhhhhhhHhhhcC-Cc-----------------------ccc-
Q 022511 81 IAIKRLTPLAVLVAGFFS------GKGKPTTQVTLSVLLTATGCVIAALG-DF-----------------------SFD- 129 (296)
Q Consensus 81 ~~l~~~~pv~~~l~~~~~------~~e~~~~~~~~~i~l~~~Gv~l~~~~-~~-----------------------~~~- 129 (296)
+++.++.|++++++++++ +|||+++.++.+++++++|++++... +. ..+
T Consensus 108 sll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (358)
T PLN00411 108 SAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIFYHGPRVFVASSPPYLNFRQLSPPLSSSNSDW 187 (358)
T ss_pred HHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHHccCcccccccccccccccccccccCCCcccH
Confidence 999999999999999999 69999999999999999999986531 10 012
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHhhhHHHHHHHHHHHhCCc-hhhhhhhhcccCchhHHHHHHH
Q 022511 130 LSGYSMALTSVFFQTMYLVLVEKSGAEDGLSSVEIMFYNSFLSLPFLVFLIIVTGEF-PGSLSLLFSKSNSFSFLVILIL 208 (296)
Q Consensus 130 ~~G~~~~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 208 (296)
..|+.+++.++++||.|++.+|+..+++. +....++++..++.....+.....++. ...+ ....+... +.+++
T Consensus 188 ~lG~~l~l~aa~~wa~~~il~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~l~~~~~~~~~~----~~~~~~~~-~~i~y 261 (358)
T PLN00411 188 LIGGALLTIQGIFVSVSFILQAHIMSEYP-AAFTVSFLYTVCVSIVTSMIGLVVEKNNPSVW----IIHFDITL-ITIVT 261 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcC-cHhHHHHHHHHHHHHHHHHHHHHHccCCcccc----eeccchHH-HHHHH
Confidence 35999999999999999999999877762 334556666666555555444443221 1110 01112232 33555
Q ss_pred HHHHHHHHHHHHHHHHhccChhHHHHHhhhhHHHHHHhhheeeCCcccchhhHHHHHHHHHHhHHHHHHHHhhhhc
Q 022511 209 SLVMGIILNFTMFLCTIVNSALTTTIVGVLKGVGSTTLGFVVLGGVQVRALNVTGLLINTAGGVWYSYAKYQQKKK 284 (296)
Q Consensus 209 ~g~~~~~~~~~~~~~~~~~sa~~~s~~~~l~pi~~~~~~~~~~~e~~~t~~~~~G~~lil~g~~~~~~~~~~~~~~ 284 (296)
.++...+.+.++++++++.+|.+++++.+++|++++++|++++|| ++++.+++|+++++.|+.+..+.++++.++
T Consensus 262 ~~i~t~lay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE-~lt~~~~iG~~LIl~Gv~l~~~~~~~~~~~ 336 (358)
T PLN00411 262 MAIITSVYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLND-SLYLGCLIGGILITLGFYAVMWGKANEEKD 336 (358)
T ss_pred HHHHHHHHHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCC-CCcHHHHHHHHHHHHHHHHHHhhhhhhhhh
Confidence 666666666778899999999999999999999999999999995 999999999999999999988765554333
No 6
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=99.97 E-value=1.7e-28 Score=213.55 Aligned_cols=259 Identities=30% Similarity=0.382 Sum_probs=222.6
Q ss_pred CchHHHHHHHHHHHHHHHHHHhcCC-ccccccChhhhhHHHHHHHHHHHHHHHHhhhhcccchhHHHHHHhhHHHHHHHH
Q 022511 16 HSMTLLTLQQLATALLIQAGRQMGY-TKSKAIDLMTAKKLLPVSLFYNANVAFALASLKGVNIPMYIAIKRLTPLAVLVA 94 (296)
Q Consensus 16 ~p~~l~~~r~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~s~~~~l~~~~pv~~~l~ 94 (296)
+|..+++.|.+.+.+.........+ .+.++ ..++++++.++++..+..++|.|++|+|.+..+++|++.|++++++
T Consensus 31 ~~~~lt~~q~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~al~~i~~p~~~~~ks~~~i~vmi~ 107 (303)
T PF08449_consen 31 FPLFLTFVQFAFNALFSFILLSLFKFPKSRK---IPLKKYAILSFLFFLASVLSNAALKYISYPTQIVFKSSKPIPVMIL 107 (303)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhccccCCCc---ChHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHhhhHHHHHHHH
Confidence 5889999999999988887766444 23333 3347889999999999999999999999999999999999999999
Q ss_pred HHHhcCccCCccchhhhhhhhhhhHhhhcCCcc----cc------hhHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHH
Q 022511 95 GFFSGKGKPTTQVTLSVLLTATGCVIAALGDFS----FD------LSGYSMALTSVFFQTMYLVLVEKSGAEDGLSSVEI 164 (296)
Q Consensus 95 ~~~~~~e~~~~~~~~~i~l~~~Gv~l~~~~~~~----~~------~~G~~~~l~s~~~~a~~~v~~k~~~~~~~~~~~~~ 164 (296)
+.+++|||++++++.++++..+|+++...+|.+ .+ ..|+.+.+++.+++|.+.+++||..++++.++++.
T Consensus 108 ~~l~~~k~y~~~~~~~v~li~~Gv~~~~~~~~~~~~~~~~~~~~~~~G~~ll~~sl~~~a~~~~~qe~~~~~~~~~~~~~ 187 (303)
T PF08449_consen 108 GVLILGKRYSRRQYLSVLLITIGVAIFTLSDSSSSSSSNSSSFSSALGIILLLLSLLLDAFTGVYQEKLFKKYGKSPWEL 187 (303)
T ss_pred HHHhcCccccHHHHHHHHHHHhhHheeeecccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 999999999999999999999999997654321 11 23999999999999999999999999999999999
Q ss_pred HHHHhhhHHHHHHHHHHH--hCCchhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHhhhhHHH
Q 022511 165 MFYNSFLSLPFLVFLIIV--TGEFPGSLSLLFSKSNSFSFLVILILSLVMGIILNFTMFLCTIVNSALTTTIVGVLKGVG 242 (296)
Q Consensus 165 ~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~sa~~~s~~~~l~pi~ 242 (296)
++|++..+.+...+.... .+|..+..+... ..+..+..++..++.+...+.+.+..+++.||.+.++...+++++
T Consensus 188 mfy~n~~~~~~~~~~~~~l~~~~~~~~~~f~~---~~p~~~~~l~~~s~~~~~g~~~i~~~~~~~~al~~t~v~t~Rk~~ 264 (303)
T PF08449_consen 188 MFYTNLFSLPFLLILLFLLPTGEFRSAIRFIS---AHPSVLLYLLLFSLTGALGQFFIFYLIKKFSALTTTIVTTLRKFL 264 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHH---HhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHH
Confidence 999999999999988887 556544433222 233456777888888888888888999999999999999999999
Q ss_pred HHHhhheeeCCcccchhhHHHHHHHHHHhHHHHHHHHhh
Q 022511 243 STTLGFVVLGGVQVRALNVTGLLINTAGGVWYSYAKYQQ 281 (296)
Q Consensus 243 ~~~~~~~~~~e~~~t~~~~~G~~lil~g~~~~~~~~~~~ 281 (296)
++++++++||+ ++++.||+|.++++.|..+|++.|+|+
T Consensus 265 sillS~~~f~~-~~~~~~~~G~~lv~~g~~~~~~~~~k~ 302 (303)
T PF08449_consen 265 SILLSVIIFGH-PLSPLQWIGIVLVFAGIFLYSYAKKKK 302 (303)
T ss_pred HHHHHHHhcCC-cCChHHHHHHHHhHHHHHHHHHhhccC
Confidence 99999999985 999999999999999999999877554
No 7
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=99.96 E-value=2.8e-27 Score=205.00 Aligned_cols=259 Identities=13% Similarity=0.040 Sum_probs=203.4
Q ss_pred eeeHHHHhcCCCchHHHHHHHHHHHHHHHHHHhcCCccccccChhhhhHHHHHHHHH-HHHHHHHhhhh-cccchhHHHH
Q 022511 5 FINKAVIMQYAHSMTLLTLQQLATALLIQAGRQMGYTKSKAIDLMTAKKLLPVSLFY-NANVAFALASL-KGVNIPMYIA 82 (296)
Q Consensus 5 ~~nK~~l~~~~~p~~l~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~al-~~~~~s~~~~ 82 (296)
+.-|+..++. .|..+.+.|++++.+++.++...++.+ ..++++++.....|.+. .....+.+.+. +++|++.+++
T Consensus 25 ~~~K~~~~~~-~p~~~~~~R~~~a~l~ll~~~~~~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~a~~a~~ 101 (292)
T PRK11272 25 LVIRIGVESW-PPLMMAGVRFLIAGILLLAFLLLRGHP--LPTLRQWLNAALIGLLLLAVGNGMVTVAEHQNVPSGIAAV 101 (292)
T ss_pred HHHHHHhccC-CHHHHHHHHHHHHHHHHHHHHHHhCCC--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHH
Confidence 3457666654 388899999999988877766543322 22455666666677664 46677788888 9999999999
Q ss_pred HHhhHHHHHHHHHHHhcCccCCccchhhhhhhhhhhHhhhcC-CcccchhHHHHHHHHHHHHHHHHHHHHHhccCCCCCH
Q 022511 83 IKRLTPLAVLVAGFFSGKGKPTTQVTLSVLLTATGCVIAALG-DFSFDLSGYSMALTSVFFQTMYLVLVEKSGAEDGLSS 161 (296)
Q Consensus 83 l~~~~pv~~~l~~~~~~~e~~~~~~~~~i~l~~~Gv~l~~~~-~~~~~~~G~~~~l~s~~~~a~~~v~~k~~~~~~~~~~ 161 (296)
+.++.|+++++++.+ +|||++++++.+++++++|+.+...+ +.+.+..|+.++++++++||.|.+..||..++ ++
T Consensus 102 l~~~~Pl~~~lla~~-~~e~~~~~~~~~~~la~~Gv~ll~~~~~~~~~~~G~l~~l~a~~~~a~~~~~~~~~~~~---~~ 177 (292)
T PRK11272 102 VVATVPLFTLCFSRL-FGIRTRKLEWLGIAIGLAGIVLLNSGGNLSGNPWGAILILIASASWAFGSVWSSRLPLP---VG 177 (292)
T ss_pred HHHHHHHHHHHHHHH-hcccCchhHHHHHHHHHHhHHHHhcCcccccchHHHHHHHHHHHHHHHHHHHHHhcCCC---cc
Confidence 999999999999986 69999999999999999999887643 33456689999999999999999999997543 34
Q ss_pred HHHHHHHhhhHHHHHHHHHHHhCCchhhhhhhhcccCchhHHHHHHHHHHHHHHHH-HHHHHHHhccChhHHHHHhhhhH
Q 022511 162 VEIMFYNSFLSLPFLVFLIIVTGEFPGSLSLLFSKSNSFSFLVILILSLVMGIILN-FTMFLCTIVNSALTTTIVGVLKG 240 (296)
Q Consensus 162 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~sa~~~s~~~~l~p 240 (296)
.....++...+.+.+.+.....++... ...+...|..+++.++.+.... .+++.++++.++.+++...+++|
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~i~~l~i~~s~~~~~l~~~~~~~~~~~~~s~~~~l~P 250 (292)
T PRK11272 178 MMAGAAEMLAAGVVLLIASLLSGERLT-------ALPTLSGFLALGYLAVFGSIIAISAYMYLLRNVRPALATSYAYVNP 250 (292)
T ss_pred hHHHHHHHHHHHHHHHHHHHHcCCccc-------ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 556678888888877776655433211 1113345666777777766555 56778999999999999999999
Q ss_pred HHHHHhhheeeCCcccchhhHHHHHHHHHHhHHHHHHH
Q 022511 241 VGSTTLGFVVLGGVQVRALNVTGLLINTAGGVWYSYAK 278 (296)
Q Consensus 241 i~~~~~~~~~~~e~~~t~~~~~G~~lil~g~~~~~~~~ 278 (296)
+++.++|++++|| ++|+.+++|.++++.|+++.+..+
T Consensus 251 i~a~i~~~~~l~E-~~t~~~iiG~~lIi~gv~~~~~~~ 287 (292)
T PRK11272 251 VVAVLLGTGLGGE-TLSPIEWLALGVIVFAVVLVTLGK 287 (292)
T ss_pred HHHHHHHHHHcCC-CCcHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999985 999999999999999998876543
No 8
>PRK11689 aromatic amino acid exporter; Provisional
Probab=99.96 E-value=3e-27 Score=205.05 Aligned_cols=253 Identities=15% Similarity=0.123 Sum_probs=187.9
Q ss_pred eeeHHHHhcCCCchHHHHHHHHHHHHHHHHHHhcCCccccccChhhhhHHHHHHHHHHHHHHHHhhhhc----ccchhHH
Q 022511 5 FINKAVIMQYAHSMTLLTLQQLATALLIQAGRQMGYTKSKAIDLMTAKKLLPVSLFYNANVAFALASLK----GVNIPMY 80 (296)
Q Consensus 5 ~~nK~~l~~~~~p~~l~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~----~~~~s~~ 80 (296)
...|..+++++ |..+.+.|+.++.+++.++.. +.+.++ ++.+..+..++.+..+..+.+.+++ +++++.+
T Consensus 21 ~~~k~~~~~~~-P~~~~~~R~~~a~l~l~~~~~--~~~~~~---~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~a~~a 94 (295)
T PRK11689 21 GLIRGVSESLG-PVGGAAMIYSVSGLLLLLTVG--FPRLRQ---FPKRYLLAGGLLFVSYEICLALSLGYANTRRQAIEV 94 (295)
T ss_pred HHHHHHHccCC-hHHHHHHHHHHHHHHHHHHcc--cccccc---ccHHHHHHHhHHHHHHHHHHHHHHHHhhccccchHH
Confidence 45788887765 899999999999888776532 111112 2223444445555566666666664 5688889
Q ss_pred HHHHhhHHHHHHHHHHHhcCccCCccchhhhhhhhhhhHhhhcCCc-----------ccchhHHHHHHHHHHHHHHHHHH
Q 022511 81 IAIKRLTPLAVLVAGFFSGKGKPTTQVTLSVLLTATGCVIAALGDF-----------SFDLSGYSMALTSVFFQTMYLVL 149 (296)
Q Consensus 81 ~~l~~~~pv~~~l~~~~~~~e~~~~~~~~~i~l~~~Gv~l~~~~~~-----------~~~~~G~~~~l~s~~~~a~~~v~ 149 (296)
.++.++.|+++.+++++++|||++++++.+++++++|++++..++. +.+..|+.+++.++++||.|.++
T Consensus 95 ~~l~~~~Pi~~~ll~~~~~~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~A~~~v~ 174 (295)
T PRK11689 95 GMVNYLWPSLTILFAVLFNGQKANWLLIPGLLLALAGVAWVLGGDNGLSLAELINNIASNPLSYGLAFIGAFIWAAYCNV 174 (295)
T ss_pred HHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHHHHhHhheecCCccchhhhhhhccccChHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998765432 12346999999999999999999
Q ss_pred HHHhccCCCCCHHHHHHHHhhhHHHHHHHHHHHhCCchhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHHHHHHhccCh
Q 022511 150 VEKSGAEDGLSSVEIMFYNSFLSLPFLVFLIIVTGEFPGSLSLLFSKSNSFSFLVILILSLVMGIILNFTMFLCTIVNSA 229 (296)
Q Consensus 150 ~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~sa 229 (296)
.||..+++ ++....+ ..+...+.+.....++ +. ...+...|..+++.++.+...+.++++++|+.++
T Consensus 175 ~k~~~~~~--~~~~~~~---~~~~~~l~~~~~~~~~-~~-------~~~~~~~~~~l~~~~~~t~~~~~l~~~al~~~~a 241 (295)
T PRK11689 175 TRKYARGK--NGITLFF---ILTALALWIKYFLSPQ-PA-------MVFSLPAIIKLLLAAAAMGFGYAAWNVGILHGNM 241 (295)
T ss_pred HhhccCCC--CchhHHH---HHHHHHHHHHHHHhcC-cc-------ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCH
Confidence 99986554 5554322 2233333332333222 11 1113344555566676666666888899999999
Q ss_pred hHHHHHhhhhHHHHHHhhheeeCCcccchhhHHHHHHHHHHhHHHHHH
Q 022511 230 LTTTIVGVLKGVGSTTLGFVVLGGVQVRALNVTGLLINTAGGVWYSYA 277 (296)
Q Consensus 230 ~~~s~~~~l~pi~~~~~~~~~~~e~~~t~~~~~G~~lil~g~~~~~~~ 277 (296)
.+++...+++|++++++|++++|| ++++.+++|.++++.|+.+....
T Consensus 242 ~~~s~~~~l~Pv~a~i~~~~~lgE-~~~~~~~iG~~lI~~gv~~~~~~ 288 (295)
T PRK11689 242 TLLATASYFTPVLSAALAALLLST-PLSFSFWQGVAMVTAGSLLCWLA 288 (295)
T ss_pred HHHHHHHHhHHHHHHHHHHHHhCC-CCcHHHHHHHHHHHHhHHHHhhh
Confidence 999999999999999999999985 99999999999999998877543
No 9
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=99.96 E-value=6.6e-27 Score=199.61 Aligned_cols=252 Identities=15% Similarity=0.121 Sum_probs=200.4
Q ss_pred eeeeHHHHhcCCCchHHHHHHHHHHHHHHHHHHhcCCccccccChhhhhHHHHHHH-HHHHHHHHHhhhhcccchhHHHH
Q 022511 4 VFINKAVIMQYAHSMTLLTLQQLATALLIQAGRQMGYTKSKAIDLMTAKKLLPVSL-FYNANVAFALASLKGVNIPMYIA 82 (296)
Q Consensus 4 ~~~nK~~l~~~~~p~~l~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~al~~~~~s~~~~ 82 (296)
.+..|+.+++...|..+.+.|.+++.+.+.+....+ .++++++..+..+. ....+..+.+.|++++|++.+++
T Consensus 5 ~~~~k~~~~~~~~~~~~~~~r~~~~~l~l~~~~~~~------~~~~~~~~~~~~~~~~~~l~~~~~~~a~~~~~~~~~~i 78 (260)
T TIGR00950 5 GVVIGQYLEGQVPLYFAVFRRLIFALLLLLPLLRRR------PPLKRLLRLLLLGALQIGVFYVLYFVAVKRLPVGEAAL 78 (260)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhc------cCHhHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHH
Confidence 356788887765567799999998888777655433 12333344555554 46788899999999999999999
Q ss_pred HHhhHHHHHHHHHHHhcCccCCccchhhhhhhhhhhHhhhcCC-cccchhHHHHHHHHHHHHHHHHHHHHHhccCCCCCH
Q 022511 83 IKRLTPLAVLVAGFFSGKGKPTTQVTLSVLLTATGCVIAALGD-FSFDLSGYSMALTSVFFQTMYLVLVEKSGAEDGLSS 161 (296)
Q Consensus 83 l~~~~pv~~~l~~~~~~~e~~~~~~~~~i~l~~~Gv~l~~~~~-~~~~~~G~~~~l~s~~~~a~~~v~~k~~~~~~~~~~ 161 (296)
+.++.|+++++++.+++|||++++++.++.++++|+.++..++ .+.+..|+.++++++++++.+.++.|+..++++.++
T Consensus 79 i~~~~P~~~~~~~~l~~~e~~~~~~~~gi~i~~~Gv~li~~~~~~~~~~~G~~~~l~a~~~~a~~~~~~k~~~~~~~~~~ 158 (260)
T TIGR00950 79 LLYLAPLYVTLLSDLMGKERPRKLVLLAAVLGLAGAVLLLSDGNLSINPAGLLLGLGSGISFALGTVLYKRLVKKEGPEL 158 (260)
T ss_pred HHhhhHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHhhccCCcccccHHHHHHHHHHHHHHHHHHHHHhHHhhcCCchH
Confidence 9999999999999999999999999999999999999876543 445678999999999999999999999876654345
Q ss_pred HHHHHHHhhhHHHHHHHHHHHhCCchhhhhhhhcccCchhHHHHHHHHHHHHHH-HHHHHHHHHhccChhHHHHHhhhhH
Q 022511 162 VEIMFYNSFLSLPFLVFLIIVTGEFPGSLSLLFSKSNSFSFLVILILSLVMGII-LNFTMFLCTIVNSALTTTIVGVLKG 240 (296)
Q Consensus 162 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~sa~~~s~~~~l~p 240 (296)
.....++...+.+.+.+.....++... .+...+..++..++++.. .+.+++++.++.++.+++.+.+++|
T Consensus 159 ~~~~~~~~~~~~~~l~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~s~~~~~~p 229 (260)
T TIGR00950 159 LQFTGWVLLLGALLLLPFAWFLGPNPQ---------ALSLQWGALLYLGLIGTALAYFLWNKGLTLVDPSAASILALAEP 229 (260)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCC---------cchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHH
Confidence 555556777888888877666543221 123445556666766654 4466779999999999999999999
Q ss_pred HHHHHhhheeeCCcccchhhHHHHHHHHHHh
Q 022511 241 VGSTTLGFVVLGGVQVRALNVTGLLINTAGG 271 (296)
Q Consensus 241 i~~~~~~~~~~~e~~~t~~~~~G~~lil~g~ 271 (296)
+++.+++++++|| ++++.+++|.++++.|+
T Consensus 230 v~~~ll~~~~~~E-~~~~~~~~G~~li~~g~ 259 (260)
T TIGR00950 230 LVALLLGLLILGE-TLSLPQLIGGALIIAAV 259 (260)
T ss_pred HHHHHHHHHHhCC-CCCHHHHHHHHHHHHhc
Confidence 9999999999985 99999999999999885
No 10
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=99.96 E-value=3.2e-26 Score=198.69 Aligned_cols=259 Identities=12% Similarity=0.023 Sum_probs=186.0
Q ss_pred eHHHHhcCCCchHHHHHHHHHHHHHHHHHHhcCC-ccc--ccc-ChhhhhHHHHHHHHHHHHHHHHhhhhcccchhHHHH
Q 022511 7 NKAVIMQYAHSMTLLTLQQLATALLIQAGRQMGY-TKS--KAI-DLMTAKKLLPVSLFYNANVAFALASLKGVNIPMYIA 82 (296)
Q Consensus 7 nK~~l~~~~~p~~l~~~r~~~~~~~l~~~~~~~~-~~~--~~~-~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~s~~~~ 82 (296)
.|.. .+.+ |..+.++|.+++.+++.++...++ .+. ++. ++++.......++..+.+..++++|++++|++.+++
T Consensus 27 ~k~~-~~~~-~~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~ 104 (296)
T PRK15430 27 FKLI-YYVP-ADEILTHRVIWSFFFMVVLMSICRQWSYLKTLIQTPQKIFMLAVSAVLIGGNWLLFIWAVNNHHMLEASL 104 (296)
T ss_pred HHHh-cCCC-HHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHH
Confidence 4654 3444 778999999999876665543221 111 111 333333334455667788999999999999999999
Q ss_pred HHhhHHHHHHHHHHHhcCccCCccchhhhhhhhhhhHhhhcCCcccchhHHHHHHHHHHHHHHHHHHHHHhccCCCCCHH
Q 022511 83 IKRLTPLAVLVAGFFSGKGKPTTQVTLSVLLTATGCVIAALGDFSFDLSGYSMALTSVFFQTMYLVLVEKSGAEDGLSSV 162 (296)
Q Consensus 83 l~~~~pv~~~l~~~~~~~e~~~~~~~~~i~l~~~Gv~l~~~~~~~~~~~G~~~~l~s~~~~a~~~v~~k~~~~~~~~~~~ 162 (296)
+.++.|+++++++++++|||+++++|.+++++++|++++..++.+. ..+++.++++||.|.+..||..++...+..
T Consensus 105 l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~~~~~~~----~~~~l~aa~~~a~~~i~~r~~~~~~~~~~~ 180 (296)
T PRK15430 105 GYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQLWTFGSL----PIIALGLAFSFAFYGLVRKKIAVEAQTGML 180 (296)
T ss_pred HHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHcCCc----cHHHHHHHHHHHHHHHHHHhcCCCCchhHH
Confidence 9999999999999999999999999999999999999876433222 256888999999999999987543222333
Q ss_pred HHHHHHhhhHHHHHHHHHHHhCCchhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHhhhhHHH
Q 022511 163 EIMFYNSFLSLPFLVFLIIVTGEFPGSLSLLFSKSNSFSFLVILILSLVMGIILNFTMFLCTIVNSALTTTIVGVLKGVG 242 (296)
Q Consensus 163 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~sa~~~s~~~~l~pi~ 242 (296)
....++.+.+.+...+. ..+.... ..+.+...+..++..|+.+...+.+++.++++.+|.+++.+.+++|++
T Consensus 181 ~~~~~~~~~~~~~~~~~---~~~~~~~-----~~~~~~~~~~~~~~~g~~t~i~~~~~~~a~~~~~a~~~s~~~~l~Pv~ 252 (296)
T PRK15430 181 IETMWLLPVAAIYLFAI---ADSSTSH-----MGQNPMSLNLLLIAAGIVTTVPLLCFTAAATRLRLSTLGFFQYIGPTL 252 (296)
T ss_pred HHHHHHHHHHHHHHHHH---ccCCccc-----ccCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 33445554444443221 1111100 011112223445556666667778888999999999999999999999
Q ss_pred HHHhhheeeCCcccchhhHHHHHHHHHHhHHHHHHHHh
Q 022511 243 STTLGFVVLGGVQVRALNVTGLLINTAGGVWYSYAKYQ 280 (296)
Q Consensus 243 ~~~~~~~~~~e~~~t~~~~~G~~lil~g~~~~~~~~~~ 280 (296)
+.++|++++|| ++++.+++|+++++.|+.+...+...
T Consensus 253 a~~~g~l~l~E-~~~~~~~~G~~lI~~~~~v~~~~~~~ 289 (296)
T PRK15430 253 MFLLAVTFYGE-KPGADKMVTFAFIWVALAIFVMDAIY 289 (296)
T ss_pred HHHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999985 99999999999999998887765433
No 11
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=99.96 E-value=5.8e-26 Score=197.44 Aligned_cols=263 Identities=11% Similarity=0.089 Sum_probs=192.0
Q ss_pred eeeHHHHhcCCCchHHHHHHHHHHHHHHHHHHhcCCccccccChhhhhHHHHHHHHHH-HHHHHHhhhhcc-cchhHHHH
Q 022511 5 FINKAVIMQYAHSMTLLTLQQLATALLIQAGRQMGYTKSKAIDLMTAKKLLPVSLFYN-ANVAFALASLKG-VNIPMYIA 82 (296)
Q Consensus 5 ~~nK~~l~~~~~p~~l~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~al~~-~~~s~~~~ 82 (296)
...|..+++.+ |..+.++|+.++++.+..+...+ +.++ +..+..+++.. ....+.+.++++ .|++.+.+
T Consensus 21 ~~~k~~~~~~~-p~~~~~~R~~~a~~~l~~~~~~~-----~~~~---~~~~~~g~~~~~~~~~~~~~~~~~~~~a~~a~~ 91 (299)
T PRK11453 21 VVIKVGLHNMP-PLMLAGLRFMLVAFPAIFFVARP-----KVPL---NLLLGYGLTISFGQFAFLFCAINFGMPAGLASL 91 (299)
T ss_pred HHHHHHHhcCC-HHHHHHHHHHHHHHHHHHHhcCC-----CCch---HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 45688787754 88899999998776655443211 1222 33444455433 444466778887 68999999
Q ss_pred HHhhHHHHHHHHHHHhcCccCCccchhhhhhhhhhhHhhhcCC---cccchhHHHHHHHHHHHHHHHHHHHHHhccCCC-
Q 022511 83 IKRLTPLAVLVAGFFSGKGKPTTQVTLSVLLTATGCVIAALGD---FSFDLSGYSMALTSVFFQTMYLVLVEKSGAEDG- 158 (296)
Q Consensus 83 l~~~~pv~~~l~~~~~~~e~~~~~~~~~i~l~~~Gv~l~~~~~---~~~~~~G~~~~l~s~~~~a~~~v~~k~~~~~~~- 158 (296)
+.++.|+++.+++++++|||++++++.+++++++|+.++..++ .+.+..|+.+++.++++++.|.++.||..++.+
T Consensus 92 l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~ll~~~~~~~~~~~~~G~~l~l~aal~~a~~~v~~~~~~~~~~~ 171 (299)
T PRK11453 92 VLQAQAFFTIVLGAFTFGERLQGKQLAGIALAIFGVLVLIEDSLNGQHVAMLGFMLTLAAAFSWACGNIFNKKIMSHSTR 171 (299)
T ss_pred HHHhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhHHHhccccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcccCc
Confidence 9999999999999999999999999999999999999876532 223457999999999999999999999765432
Q ss_pred CCHHHHHHHHhhhHHHHHHHHHHHhCCchhhhhhhhcccCchhHHHHHHHHHHHHHHHH-HHHHHHHhccChhHHHHHhh
Q 022511 159 LSSVEIMFYNSFLSLPFLVFLIIVTGEFPGSLSLLFSKSNSFSFLVILILSLVMGIILN-FTMFLCTIVNSALTTTIVGV 237 (296)
Q Consensus 159 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~sa~~~s~~~~ 237 (296)
.+......++...+.+.........++....... ....+...|..+++.|+++.... .++++.+++.++.+++.+.+
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~l~i~~t~~~~~l~~~~l~~~~a~~~s~~~~ 249 (299)
T PRK11453 172 PAVMSLVVWSALIPIIPFFVASLILDGSATMIHS--LVTIDMTTILSLMYLAFVATIVGYGIWGTLLGRYETWRVAPLSL 249 (299)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHhcCchhhhhh--hccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 2233444555555444333333332221111000 11224566778888888888777 55668899999999999999
Q ss_pred hhHHHHHHhhheeeCCcccchhhHHHHHHHHHHhHHHHHHHH
Q 022511 238 LKGVGSTTLGFVVLGGVQVRALNVTGLLINTAGGVWYSYAKY 279 (296)
Q Consensus 238 l~pi~~~~~~~~~~~e~~~t~~~~~G~~lil~g~~~~~~~~~ 279 (296)
++|+++.++|++++|| +++..+++|+++++.|+.+..+.++
T Consensus 250 l~Pv~a~~~~~l~lgE-~~~~~~~iG~~lI~~gv~l~~~~~~ 290 (299)
T PRK11453 250 LVPVVGLASAALLLDE-RLTGLQFLGAVLIMAGLYINVFGLR 290 (299)
T ss_pred HHHHHHHHHHHHHhCC-CccHHHHHHHHHHHHHHHHHhcchh
Confidence 9999999999999985 9999999999999999987765443
No 12
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=99.95 E-value=8.9e-26 Score=195.63 Aligned_cols=251 Identities=15% Similarity=0.110 Sum_probs=193.1
Q ss_pred eeeHHHHhcCCCchHHHHHHHHHHHHHHHHHHhcCCccccccChhhhhHHHHHHHHHHHHHHHHhhhhcccchhHHHHHH
Q 022511 5 FINKAVIMQYAHSMTLLTLQQLATALLIQAGRQMGYTKSKAIDLMTAKKLLPVSLFYNANVAFALASLKGVNIPMYIAIK 84 (296)
Q Consensus 5 ~~nK~~l~~~~~p~~l~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~s~~~~l~ 84 (296)
...|+..++.+ |..+.++|++++.+++.++...++ ++.++++++..+..|.+......+.+++++++|++.++++.
T Consensus 29 ~~~K~~~~~~~-~~~~~~~R~~~a~l~l~~~~~~~~---~~~~~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~a~~l~ 104 (293)
T PRK10532 29 SLAKSLFPLVG-APGVTALRLALGTLILIAIFKPWR---LRFAKEQRLPLLFYGVSLGGMNYLFYLSIQTVPLGIAVALE 104 (293)
T ss_pred HHHHHHHHHcC-HHHHHHHHHHHHHHHHHHHHhHHh---ccCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 35788887755 777999999999988776653222 13456666778888888888888999999999999999999
Q ss_pred hhHHHHHHHHHHHhcCccCCccchhhhhhhhhhhHhhhcC--C-cccchhHHHHHHHHHHHHHHHHHHHHHhccCCCCCH
Q 022511 85 RLTPLAVLVAGFFSGKGKPTTQVTLSVLLTATGCVIAALG--D-FSFDLSGYSMALTSVFFQTMYLVLVEKSGAEDGLSS 161 (296)
Q Consensus 85 ~~~pv~~~l~~~~~~~e~~~~~~~~~i~l~~~Gv~l~~~~--~-~~~~~~G~~~~l~s~~~~a~~~v~~k~~~~~~~~~~ 161 (296)
++.|+++++++ +||++. +..+.++++|+.++... + .+.+..|+.+++.+++++|.|.+..||..+++ ++
T Consensus 105 ~t~Pi~~~ll~----~~~~~~--~~~~~i~~~Gv~li~~~~~~~~~~~~~G~ll~l~aa~~~a~~~v~~r~~~~~~--~~ 176 (293)
T PRK10532 105 FTGPLAVALFS----SRRPVD--FVWVVLAVLGLWFLLPLGQDVSHVDLTGAALALGAGACWAIYILSGQRAGAEH--GP 176 (293)
T ss_pred HHHHHHHHHHh----cCChHH--HHHHHHHHHHHheeeecCCCcccCChHHHHHHHHHHHHHHHHHHHHHHHhccC--Cc
Confidence 99999999887 356554 44567788999876532 2 23356799999999999999999999987654 55
Q ss_pred HHHHHHHhhhHHHHHHHHHHHhCCchhhhhhhhcccCchhHHHHHHHHHHHHHHHH-HHHHHHHhccChhHHHHHhhhhH
Q 022511 162 VEIMFYNSFLSLPFLVFLIIVTGEFPGSLSLLFSKSNSFSFLVILILSLVMGIILN-FTMFLCTIVNSALTTTIVGVLKG 240 (296)
Q Consensus 162 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~sa~~~s~~~~l~p 240 (296)
... .++...+...+.|.....++.. ..+...+...+..|+++...+ .++++++++.+|.+++.+.+++|
T Consensus 177 ~~~-~~~~~~~~~~l~~~~~~~~~~~---------~~~~~~~~~~l~lgv~~t~~~~~l~~~~~~~~~a~~as~~~~l~P 246 (293)
T PRK10532 177 ATV-AIGSLIAALIFVPIGALQAGEA---------LWHWSILPLGLAVAILSTALPYSLEMIALTRLPTRTFGTLMSMEP 246 (293)
T ss_pred hHH-HHHHHHHHHHHHHHHHHccCcc---------cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHhHH
Confidence 555 4566667777777665532200 112333444556777776666 46679999999999999999999
Q ss_pred HHHHHhhheeeCCcccchhhHHHHHHHHHHhHHHHHHH
Q 022511 241 VGSTTLGFVVLGGVQVRALNVTGLLINTAGGVWYSYAK 278 (296)
Q Consensus 241 i~~~~~~~~~~~e~~~t~~~~~G~~lil~g~~~~~~~~ 278 (296)
+++.++|++++|| ++++.+++|.++++.|+..+....
T Consensus 247 v~a~l~~~l~lgE-~~~~~~~iG~~lIl~~~~~~~~~~ 283 (293)
T PRK10532 247 ALAAVSGMIFLGE-TLTLIQWLALGAIIAASMGSTLTI 283 (293)
T ss_pred HHHHHHHHHHhCC-CCcHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999985 999999999999999999987543
No 13
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=99.95 E-value=1.6e-27 Score=187.74 Aligned_cols=274 Identities=23% Similarity=0.357 Sum_probs=236.9
Q ss_pred eeeeeeHHHHhcCCCc--hHHHHHHHHHHHHHHHHHHhcCCccccccChhhhhHHHHHHHHHHHHHHHHhhhhcccchhH
Q 022511 2 AMVFINKAVIMQYAHS--MTLLTLQQLATALLIQAGRQMGYTKSKAIDLMTAKKLLPVSLFYNANVAFALASLKGVNIPM 79 (296)
Q Consensus 2 ~~~~~nK~~l~~~~~p--~~l~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~s~ 79 (296)
.|++-|||++++-+|. ..+.+.|.+++.+.+......+..+.| .++.+.|++.+++....++....+++|.+++.
T Consensus 20 lmTltNKyVls~~gfnMnflll~vQSlvcvv~l~iLk~l~~~~fR---~t~aK~WfpiSfLLv~MIyt~SKsLqyL~vpi 96 (309)
T COG5070 20 LMTLTNKYVLSNLGFNMNFLLLAVQSLVCVVGLLILKFLRLVEFR---LTKAKKWFPISFLLVVMIYTSSKSLQYLAVPI 96 (309)
T ss_pred HHHHhhHheecCCCCchhhHHHHHHHHHHHHHHHHHHHHhHhhee---hhhhhhhcCHHHHHHHHHHhcccceeeeeeeH
Confidence 3678899999975555 458999999999888887766654444 45668999999999999999999999999999
Q ss_pred HHHHHhhHHHHHHHHHHHhcCccCCccchhhhhhhhhhhHhhhcCCcc--------cchhHHHHHHHHHHHHHHHHHHHH
Q 022511 80 YIAIKRLTPLAVLVAGFFSGKGKPTTQVTLSVLLTATGCVIAALGDFS--------FDLSGYSMALTSVFFQTMYLVLVE 151 (296)
Q Consensus 80 ~~~l~~~~pv~~~l~~~~~~~e~~~~~~~~~i~l~~~Gv~l~~~~~~~--------~~~~G~~~~l~s~~~~a~~~v~~k 151 (296)
+++.+.++.+.++..+..++|.|++..+..+.+++++.-+...++|.+ .| .|++|+...+++.+++....|
T Consensus 97 YTiFKNltII~iAygEvl~Fgg~vtsl~l~SFilMvlSS~va~w~D~q~~~~~~~~lN-~GY~Wm~~NclssaafVL~mr 175 (309)
T COG5070 97 YTIFKNLTIILIAYGEVLFFGGRVTSLELLSFILMVLSSVVATWGDQQASAFKAQILN-PGYLWMFTNCLSSAAFVLIMR 175 (309)
T ss_pred HHHhccceeehhHhhHHHHhcCccchhhHHHHHHHHHHHHHhccchhhHHHHHhcccC-CceEEEehhhHhHHHHHHHHH
Confidence 999999999999999999999999999999999999999888887763 33 799999999999999999999
Q ss_pred HhccCCCCCHHHHHHHHhhhHHHHHHHHHHHhCCchhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHHHHHHhccChhH
Q 022511 152 KSGAEDGLSSVEIMFYNSFLSLPFLVFLIIVTGEFPGSLSLLFSKSNSFSFLVILILSLVMGIILNFTMFLCTIVNSALT 231 (296)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~sa~~ 231 (296)
+..+-.+....+.++|+++++.|+++..++..+| |+..+. ....+.........+|+++++..++.-++++.+|+++
T Consensus 176 kri~ltNf~d~dtmfYnNllslPiL~~~s~~~ed-ws~~n~--annl~~d~l~am~ISgl~svgiSy~saWcvrVtSSTt 252 (309)
T COG5070 176 KRIKLTNFKDFDTMFYNNLLSLPILLSFSFLFED-WSPGNL--ANNLSVDSLMAMFISGLCSVGISYCSAWCVRVTSSTT 252 (309)
T ss_pred HhhcccccchhhHHHHhhhHHHHHHHHHHHHhcc-CCcchh--hcCCChHHHHHHHHHHHHHhhhhhccceeEeehhhhH
Confidence 9877666788999999999999999999998866 433221 2222344466788999999999999999999999999
Q ss_pred HHHHhhhhHHHHHHhhheeeCCcccchhhHHHHHHHHHHhHHHHHHHHhhhh
Q 022511 232 TTIVGVLKGVGSTTLGFVVLGGVQVRALNVTGLLINTAGGVWYSYAKYQQKK 283 (296)
Q Consensus 232 ~s~~~~l~pi~~~~~~~~~~~e~~~t~~~~~G~~lil~g~~~~~~~~~~~~~ 283 (296)
.|+++.+++....+.|.++|| ++.+...+..+.+-..+...|...+.++++
T Consensus 253 ySMvGALNKlp~alaGlvffd-ap~nf~si~sillGflsg~iYavaks~k~q 303 (309)
T COG5070 253 YSMVGALNKLPIALAGLVFFD-APVNFLSIFSILLGFLSGAIYAVAKSKKQQ 303 (309)
T ss_pred HHHHHHhhhChHHHhhhhhcC-CchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999997 599999999999999999999998766443
No 14
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=1.8e-28 Score=198.62 Aligned_cols=286 Identities=20% Similarity=0.273 Sum_probs=252.0
Q ss_pred CeeeeeeHHHHhc----CCCchHHHHHHHHHHHHHHHHHHhc-----CCcccc--ccChhhhhHHHHHHHHHHHHHHHHh
Q 022511 1 MAMVFINKAVIMQ----YAHSMTLLTLQQLATALLIQAGRQM-----GYTKSK--AIDLMTAKKLLPVSLFYNANVAFAL 69 (296)
Q Consensus 1 ~~~~~~nK~~l~~----~~~p~~l~~~r~~~~~~~l~~~~~~-----~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~ 69 (296)
+++++.||++++. .+-|.+++..|-++...+...+... .....+ +++.+..++.+|.++.+.+.+.+.|
T Consensus 41 I~~vf~nk~llss~~~~Ld~plf~t~~qcLvt~~~c~~ls~ls~k~~~~ftfp~~~ldl~t~r~vlplsvVfi~mI~fnn 120 (347)
T KOG1442|consen 41 IGLVFLNKHLLSSLVVILDAPLFITWYQCLVTTSICLVLSSLSVKYPGLFTFPSLQLDLATARQVLPLSVVFILMISFNN 120 (347)
T ss_pred ehhhhhHHHHhhchhhhcCcHHHHHHHHHHHHHHHHHHHHHHHhhccceeccCcccccHHHHHhhcchhheeeeehhccc
Confidence 4688999999984 5789999999998887776665432 112222 3567778899999999999999999
Q ss_pred hhhcccchhHHHHHHhhHHHHHHHHHHHhcCccCCccchhhhhhhhhhhHhhhcCC---cccchhHHHHHHHHHHHHHHH
Q 022511 70 ASLKGVNIPMYIAIKRLTPLAVLVAGFFSGKGKPTTQVTLSVLLTATGCVIAALGD---FSFDLSGYSMALTSVFFQTMY 146 (296)
Q Consensus 70 ~al~~~~~s~~~~l~~~~pv~~~l~~~~~~~e~~~~~~~~~i~l~~~Gv~l~~~~~---~~~~~~G~~~~l~s~~~~a~~ 146 (296)
.+++|++++++.+=+++..+|+.+++++++|+|-+..-..++.+.++|.-+.+..| .+.++.|.++++.|+++.|+.
T Consensus 121 lcL~yVgVaFYyvgRsLttvFtVlLtyvllkqkTs~~~~~~C~lIi~GF~lGvdqE~~~~~ls~~GvifGVlaSl~vAln 200 (347)
T KOG1442|consen 121 LCLKYVGVAFYYVGRSLTTVFTVLLTYVLLKQKTSFFALGCCLLIILGFGLGVDQEGSTGTLSWIGVIFGVLASLAVALN 200 (347)
T ss_pred eehhhcceEEEEeccchhhhHHHHhHHhhcccccccccceeehhheehheeccccccccCccchhhhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998876655 456789999999999999999
Q ss_pred HHHHHHhccCCCCCHHHHHHHHhhhHHHHHHHHHHHhCCchhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 022511 147 LVLVEKSGAEDGLSSVEIMFYNSFLSLPFLVFLIIVTGEFPGSLSLLFSKSNSFSFLVILILSLVMGIILNFTMFLCTIV 226 (296)
Q Consensus 147 ~v~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 226 (296)
.++.||.....+..-|..++|+++.+.++.+|...+.||.....+ +++.++..+|....++|++++.+++...+-+|.
T Consensus 201 aiytkk~l~~v~~~iw~lt~ynnv~a~lLflpll~lnge~~~v~~--~~~l~a~~Fw~~mtLsglfgF~mgyvTg~QIK~ 278 (347)
T KOG1442|consen 201 AIYTKKVLPPVGDCIWRLTAYNNVNALLLFLPLLILNGEFQAVVG--FPHLPAIKFWILMTLSGLFGFAMGYVTGWQIKV 278 (347)
T ss_pred HHhhheecccccCeehhhHHHHHHHHHHHHHHHHHHcchHHHHcC--cccchHHHHHHHHHHHHHHHHHhhheeeEEEEe
Confidence 999999988877888999999999999999999999999877655 356667889999999999999999988888999
Q ss_pred cChhHHHHHhhhhHHHHHHhhheeeCCcccchhhHHHHHHHHHHhHHHHHHHHhhhhccCCcc
Q 022511 227 NSALTTTIVGVLKGVGSTTLGFVVLGGVQVRALNVTGLLINTAGGVWYSYAKYQQKKKKLPKS 289 (296)
Q Consensus 227 ~sa~~~s~~~~l~pi~~~~~~~~~~~e~~~t~~~~~G~~lil~g~~~~~~~~~~~~~~~~~~~ 289 (296)
+||.|..+.+..|.....++++.+++| .-+..-|-|-++++.|..+|.+.|+++++++.++.
T Consensus 279 TSplThnISgTAka~aQTvlAv~~y~E-~ks~lwwtsn~~vLvgs~~YT~vk~~em~~~~~~~ 340 (347)
T KOG1442|consen 279 TSPLTHNISGTAKAAAQTVLAVAYYSE-TKSGLWWTSNIVVLVGSLAYTLVKEHEMRKASAQR 340 (347)
T ss_pred cccceeeecHhHHHHHHHHHHHHHHHH-HhhhheeeeeEEEEehhHHHHHHHHHHHHhhccCC
Confidence 999999999999999999999999985 99999999999999999999998888776655543
No 15
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=99.94 E-value=5e-25 Score=190.49 Aligned_cols=267 Identities=13% Similarity=0.050 Sum_probs=200.3
Q ss_pred eeHHHHhc-CCCchHHHHHHHHHHHHHHHHHHhcCC--ccccccChhhhhHHHHHHHHHHHHHHHHhhhhcccchhHHHH
Q 022511 6 INKAVIMQ-YAHSMTLLTLQQLATALLIQAGRQMGY--TKSKAIDLMTAKKLLPVSLFYNANVAFALASLKGVNIPMYIA 82 (296)
Q Consensus 6 ~nK~~l~~-~~~p~~l~~~r~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~s~~~~ 82 (296)
.++++-++ .+.|..-+++-.+...++.......++ .+..+..++++++.+..+++-...+++.+.|++|++++.+++
T Consensus 31 ~s~~l~~~~~~~P~~Qs~~~Y~~l~~vy~~~~~~r~~~~~~~~~~~~~~w~y~lla~~Dv~aN~~~v~a~~yTsvtS~~l 110 (334)
T PF06027_consen 31 FSSLLANKGVNIPTFQSFFNYVLLALVYTPILLYRRGFKKWLKVLKRPWWKYFLLALLDVEANYLVVLAYQYTSVTSVQL 110 (334)
T ss_pred HHHHHHhcCccCcHHHHHHHHHHHHHHHhhhhhhccccccchhhcchhHHHHHHHHHHHHHHHHHHHHHhhcccHhHHHh
Confidence 34444443 456766444444333332222222221 122222345557778889999999999999999999999999
Q ss_pred HHhhHHHHHHHHHHHhcCccCCccchhhhhhhhhhhHhhhcCCc---------ccchhHHHHHHHHHHHHHHHHHHHHHh
Q 022511 83 IKRLTPLAVLVAGFFSGKGKPTTQVTLSVLLTATGCVIAALGDF---------SFDLSGYSMALTSVFFQTMYLVLVEKS 153 (296)
Q Consensus 83 l~~~~pv~~~l~~~~~~~e~~~~~~~~~i~l~~~Gv~l~~~~~~---------~~~~~G~~~~l~s~~~~a~~~v~~k~~ 153 (296)
+.+++.+++++++++++|||+++.++.+++++++|++++...|. +....|+++++.++++||.++++.|+.
T Consensus 111 L~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~sD~~~~~~~~~~~~~i~GDll~l~~a~lya~~nV~~E~~ 190 (334)
T PF06027_consen 111 LDCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVVVSDVLSGSDSSSGSNPILGDLLALLGAILYAVSNVLEEKL 190 (334)
T ss_pred hhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhheeeecccccccCCCCCccchhHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999998765432 234789999999999999999999999
Q ss_pred ccCCCCCHHHHHHHHhhhHHHHHHHHHHHhCCchhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHHHHHHhccChhHHH
Q 022511 154 GAEDGLSSVEIMFYNSFLSLPFLVFLIIVTGEFPGSLSLLFSKSNSFSFLVILILSLVMGIILNFTMFLCTIVNSALTTT 233 (296)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~sa~~~s 233 (296)
.+++ +..+......+++.++..+...+. |..+.. ..+++...+...+.-++.-+..+...-..++..||+...
T Consensus 191 v~~~--~~~~~lg~~Glfg~ii~~iq~~il-e~~~i~----~~~w~~~~~~~~v~~~~~lf~~y~l~p~~l~~ssAt~~n 263 (334)
T PF06027_consen 191 VKKA--PRVEFLGMLGLFGFIISGIQLAIL-ERSGIE----SIHWTSQVIGLLVGYALCLFLFYSLVPIVLRMSSATFFN 263 (334)
T ss_pred cccC--CHHHHHHHHHHHHHHHHHHHHHhe-ehhhhh----ccCCChhhHHHHHHHHHHHHHHHHHHHHHHHhCccceee
Confidence 9875 788888888889999888877765 322322 222333434444444444444444555678999999888
Q ss_pred HHhhhhHHHHHHhhheeeCCcccchhhHHHHHHHHHHhHHHHHHHHh
Q 022511 234 IVGVLKGVGSTTLGFVVLGGVQVRALNVTGLLINTAGGVWYSYAKYQ 280 (296)
Q Consensus 234 ~~~~l~pi~~~~~~~~~~~e~~~t~~~~~G~~lil~g~~~~~~~~~~ 280 (296)
+...+..+.+++++++++|+ ++++..++|.+++++|.++|+..+.+
T Consensus 264 LsLLTsd~~ali~~i~~f~~-~~~~ly~~af~lIiiG~vvy~~~~~~ 309 (334)
T PF06027_consen 264 LSLLTSDFYALIIDIFFFGY-KFSWLYILAFALIIIGFVVYNLAESP 309 (334)
T ss_pred hHHHHhhHHHHHHHHHhcCc-cccHHHHHHHHHHHHHhheEEccCCc
Confidence 88888999999999999995 99999999999999999999876543
No 16
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=99.92 E-value=1.2e-24 Score=179.38 Aligned_cols=274 Identities=19% Similarity=0.241 Sum_probs=224.8
Q ss_pred eeeeeeHHHHhcCCCchHHHHHHHHHHHHHHHHHHhcC-Cccc---cccCh-hhhhHHHHHHHHHHHHHHHHhhhhcccc
Q 022511 2 AMVFINKAVIMQYAHSMTLLTLQQLATALLIQAGRQMG-YTKS---KAIDL-MTAKKLLPVSLFYNANVAFALASLKGVN 76 (296)
Q Consensus 2 ~~~~~nK~~l~~~~~p~~l~~~r~~~~~~~l~~~~~~~-~~~~---~~~~~-~~~~~~l~~~~~~~~~~~~~~~al~~~~ 76 (296)
++.+++|+.-.++++|..++..|+++-.++........ ..++ ...+| +.+++..|.++..+.++.+.|++++|++
T Consensus 30 ~Ltf~~~~~~~~f~fPLf~ts~h~~v~flfa~~~~~l~~~~~~r~r~~~sw~~~Lr~~aPtalata~DIGLSN~sl~yVt 109 (349)
T KOG1443|consen 30 GLTFYFKWLTKNFHFPLFVTSLHLAVKFLFAALSRRLYQCSVPRARVVLSWRDYLRRLAPTALATALDIGLSNWSLEYVT 109 (349)
T ss_pred HHHHHhhhhhcCcCCchHHHHHHHHHHHHHHHHHHHHHhccCCccccCCcHHHHHHHhhhhhhhhhcccccccceeeeee
Confidence 45678999999999999999999988776665554321 1122 24444 4456677999999999999999999999
Q ss_pred hhHHHHHHhhHHHHHHHHHHHhcCccCCccchhhhhhhhhhhHhhhcCCcccchhHHHHHHHHHHHHHHHHHHHHHhccC
Q 022511 77 IPMYIAIKRLTPLAVLVAGFFSGKGKPTTQVTLSVLLTATGCVIAALGDFSFDLSGYSMALTSVFFQTMYLVLVEKSGAE 156 (296)
Q Consensus 77 ~s~~~~l~~~~pv~~~l~~~~~~~e~~~~~~~~~i~l~~~Gv~l~~~~~~~~~~~G~~~~l~s~~~~a~~~v~~k~~~~~ 156 (296)
.+.+++.|+++++|+.+++..+.-||+++.-.+.+.++..|+++.+..+.+++..|..++..++++.++.+.+.|+++++
T Consensus 110 lSlYTM~KSSsi~FIllFs~if~lEk~~w~L~l~v~lI~~Glflft~KsTqf~i~Gf~lv~~aS~~sGlRW~~tQ~ll~~ 189 (349)
T KOG1443|consen 110 LSLYTMTKSSSILFILLFSLIFKLEKFRWALVLIVLLIAVGLFLFTYKSTQFNIEGFFLVLAASLLSGLRWAFTQMLLRN 189 (349)
T ss_pred eeeeeeccccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhheeEEEecccceeehhHHHHHHHHHhhhhhHHHHHHHHhc
Confidence 99999999999999999999888899999999999999999999999999999999999999999999999999998876
Q ss_pred CC---CCHHHHHHHHhhhHHHHHHHHHHHhCC-chhhhhhhhcccCc---hhHHHHHHHHHHHHHHHHHHHHHHHhccCh
Q 022511 157 DG---LSSVEIMFYNSFLSLPFLVFLIIVTGE-FPGSLSLLFSKSNS---FSFLVILILSLVMGIILNFTMFLCTIVNSA 229 (296)
Q Consensus 157 ~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~---~~~~~~~~~~g~~~~~~~~~~~~~~~~~sa 229 (296)
.+ .+|....++..+.....++|.....+. .....+..+....+ ......+.+.|..+++...+-+....+++.
T Consensus 190 ~~~~~~~P~~ti~~l~p~M~~~Ll~~~l~fEG~~~~~~s~~f~~~d~~~~~rv~g~i~l~g~laF~l~~sEflLl~~Ts~ 269 (349)
T KOG1443|consen 190 QPSAKRNPIDTIFHLQPWMSIGLLPLSLLFEGLHLITSSSIFRFQDTGLILRVIGLISLGGLLAFLLEFSEFLLLSRTSS 269 (349)
T ss_pred CccccCCCeeeHHHhhhHHHHHHHHHHHHHcccccchhhhHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHheeeeccc
Confidence 43 578888888888877777887766533 22222211111112 223344567788888888888888999999
Q ss_pred hHHHHHhhhhHHHHHHhhheeeCCcccchhhHHHHHHHHHHhHHHHH
Q 022511 230 LTTTIVGVLKGVGSTTLGFVVLGGVQVRALNVTGLLINTAGGVWYSY 276 (296)
Q Consensus 230 ~~~s~~~~l~pi~~~~~~~~~~~e~~~t~~~~~G~~lil~g~~~~~~ 276 (296)
.+.++.+..|.+.+.+++..+.+| +++..+|.|..+++.|+..+.+
T Consensus 270 ltlSIaGI~Kel~tl~la~ii~~d-~ls~lN~~Gl~i~~agi~~~~~ 315 (349)
T KOG1443|consen 270 LTLSIAGIVKEVCTLLLAIIILKD-QLSLLNWLGLAICLAGILLHRN 315 (349)
T ss_pred eeeeHHHHHHHHHHHHHHHHHhhc-chhhhHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999986 9999999999999999999944
No 17
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=99.91 E-value=1.9e-22 Score=173.95 Aligned_cols=244 Identities=14% Similarity=0.054 Sum_probs=171.7
Q ss_pred HHHHHHHHHHHHHHHHhcC--CccccccChhhhhHHHHHHHHHHHHHHHHhhhhcccchhHHHHHHhhHHHHHHHHHHHh
Q 022511 21 LTLQQLATALLIQAGRQMG--YTKSKAIDLMTAKKLLPVSLFYNANVAFALASLKGVNIPMYIAIKRLTPLAVLVAGFFS 98 (296)
Q Consensus 21 ~~~r~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~s~~~~l~~~~pv~~~l~~~~~ 98 (296)
...+.....+.+.++...+ +.+.++.+++++...+..+.....+..+.+.++++.|++.++.+.++.|++++++++++
T Consensus 31 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~ 110 (281)
T TIGR03340 31 LWWALLAHSVLLTPYGLWYLAQVGWSRLPATFWLLLAISAVANMVYFLGLAQAYHHADVGLVYPLARSSPLLVAIWATLT 110 (281)
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhcCChhhhhhHHhhhHHHHHHHHHHH
Confidence 4555555555555544332 22222233444445555666678899999999999999999999999999999999999
Q ss_pred cCccCCccchhhhhhhhhhhHhhhcCCc-ccchhHHHHHHHHHHHHHHHHHHHHHhccCCC--CCHHHHHHHHhhhH-HH
Q 022511 99 GKGKPTTQVTLSVLLTATGCVIAALGDF-SFDLSGYSMALTSVFFQTMYLVLVEKSGAEDG--LSSVEIMFYNSFLS-LP 174 (296)
Q Consensus 99 ~~e~~~~~~~~~i~l~~~Gv~l~~~~~~-~~~~~G~~~~l~s~~~~a~~~v~~k~~~~~~~--~~~~~~~~~~~~~~-~~ 174 (296)
+|||+++++|.++.+++.|+.++..++. +.+..|+.+++.++++++.|.+..|+..++.+ .+......++.... .+
T Consensus 111 ~~e~~~~~~~~g~~~~~~Gv~ll~~~~~~~~~~~g~~~~l~aal~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (281)
T TIGR03340 111 LGETLSPLAWLGILIITLGLLVLGLSRFAQHRRKAYAWALAAALGTAIYSLSDKAAALGVPAFYSALGYLGIGFLAMGWP 190 (281)
T ss_pred HcCCCCHHHHHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhhhhccccccchhcccccHHHHHHHHHHHHHH
Confidence 9999999999999999999998765432 34557888999999999999999887643321 11111222222222 12
Q ss_pred HHHHHHHHhCCchhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHhhhhHHHHHHhhheeeCCc
Q 022511 175 FLVFLIIVTGEFPGSLSLLFSKSNSFSFLVILILSLVMGIILNFTMFLCTIVNSALTTTIVGVLKGVGSTTLGFVVLGGV 254 (296)
Q Consensus 175 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~sa~~~s~~~~l~pi~~~~~~~~~~~e~ 254 (296)
...+ ....++.. ....+...+..+...++.+...+.++++++++.++.+++...+++|+++.++|++++||
T Consensus 191 ~~~~-~~~~~~~~-------~~~~~~~~~~~~~~~~~~s~l~~~l~~~al~~~~a~~~~~~~~l~pv~a~l~g~~~lgE- 261 (281)
T TIGR03340 191 FLLL-YLKRHGRS-------MFPYARQILPSATLGGLMIGGAYALVLWAMTRLPVATVVALRNTSIVFAVVLGIWFLNE- 261 (281)
T ss_pred HHHH-HHHHhccc-------hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCceEEEeecccHHHHHHHHHHHHhCC-
Confidence 1111 11111110 00112233444455555565666778899999999999999999999999999999985
Q ss_pred ccchhhHHHHHHHHHHhHH
Q 022511 255 QVRALNVTGLLINTAGGVW 273 (296)
Q Consensus 255 ~~t~~~~~G~~lil~g~~~ 273 (296)
+++..+++|.++++.|+.+
T Consensus 262 ~~~~~~~iG~~lil~Gv~l 280 (281)
T TIGR03340 262 RWYLTRLMGVCIIVAGLVV 280 (281)
T ss_pred CccHHHHHHHHHHHHhHHh
Confidence 9999999999999999875
No 18
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=99.89 E-value=2.1e-21 Score=160.43 Aligned_cols=262 Identities=18% Similarity=0.140 Sum_probs=221.8
Q ss_pred cCCCchHHHHHHHHHHHHHHHHHHhcCCccccccChhhhhHHHHHHHHHHHHHHHHhhhhcccchhHHHHHHhhHHHHHH
Q 022511 13 QYAHSMTLLTLQQLATALLIQAGRQMGYTKSKAIDLMTAKKLLPVSLFYNANVAFALASLKGVNIPMYIAIKRLTPLAVL 92 (296)
Q Consensus 13 ~~~~p~~l~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~s~~~~l~~~~pv~~~ 92 (296)
+|.+|.++.+.|-+.+.++..........+.+ .+..+++....++....+-.+++.|++|++-.+-++.+++--+.++
T Consensus 47 rF~~~~fL~~~q~l~~~~~s~~~l~~~k~~~~--~~apl~~y~~is~tn~~s~~~~yeaLKyvSyPtq~LaKscKmIPVm 124 (327)
T KOG1581|consen 47 RFEHSLFLVFCQRLVALLVSYAMLKWWKKELS--GVAPLYKYSLISFTNTLSSWCGYEALKYVSYPTQTLAKSCKMIPVM 124 (327)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHhcccccCC--CCCchhHHhHHHHHhhcchHHHHHHHHhccchHHHHHHHhhhhHHH
Confidence 46789999999999999888776655443332 2334477888899999999999999999999999999999999999
Q ss_pred HHHHHhcCccCCccchhhhhhhhhhhHhhhcC---C------cccchhHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHH
Q 022511 93 VAGFFSGKGKPTTQVTLSVLLTATGCVIAALG---D------FSFDLSGYSMALTSVFFQTMYLVLVEKSGAEDGLSSVE 163 (296)
Q Consensus 93 l~~~~~~~e~~~~~~~~~i~l~~~Gv~l~~~~---~------~~~~~~G~~~~l~s~~~~a~~~v~~k~~~~~~~~~~~~ 163 (296)
+.+.++.|+|++..++++..+..+|+-+.... + ...+++|+.++..+.++.++.+..++++.++++.+++.
T Consensus 125 lmg~Lvy~~ky~~~eYl~~~LIs~GvsiF~l~~~s~s~~~~g~~ns~~G~~Ll~~~L~fDgfTn~tQd~lf~~~k~s~~~ 204 (327)
T KOG1581|consen 125 LMGTLVYGRKYSSFEYLVAFLISLGVSIFSLFPNSDSSSKSGRENSPIGILLLFGYLLFDGFTNATQDSLFKKYKVSSLH 204 (327)
T ss_pred HHHHHHhcCccCcHHHHHHHHHHhheeeEEEecCCCCccccCCCCchHhHHHHHHHHHHHhhHHhHHHHHhccCCccHhH
Confidence 99999999999999999999999999886542 1 12358999999999999999999999999999999999
Q ss_pred HHHHHhhhHHHHHHHHHHHhCCchhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHhhhhHHHH
Q 022511 164 IMFYNSFLSLPFLVFLIIVTGEFPGSLSLLFSKSNSFSFLVILILSLVMGIILNFTMFLCTIVNSALTTTIVGVLKGVGS 243 (296)
Q Consensus 164 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~sa~~~s~~~~l~pi~~ 243 (296)
++++.++.+++.-.......|...+..+.... ++..++=+++.+.++...+.+.+.-++++++.+.+.+...+.+++
T Consensus 205 mM~~vNLf~~i~~~~~li~qg~~~~av~F~~~---hp~~~~Di~l~s~~gavGQ~FI~~TI~~FGslt~t~I~ttRk~~s 281 (327)
T KOG1581|consen 205 MMFGVNLFSAILNGTYLILQGHLLPAVSFIKE---HPDVAFDILLYSTCGAVGQLFIFYTIERFGSLTFTTIMTTRKMVS 281 (327)
T ss_pred HHHHHHHHHHHHHHHhhhcCCCCchHHHHHHc---ChhHHHHHHHHHHhhhhhhheehhhHhhcccHHHHHHHHHHHHHH
Confidence 99999999999888876666655554443222 244555667777788888999999999999999999999999999
Q ss_pred HHhhheeeCCcccchhhHHHHHHHHHHhHHHHHHHHh
Q 022511 244 TTLGFVVLGGVQVRALNVTGLLINTAGGVWYSYAKYQ 280 (296)
Q Consensus 244 ~~~~~~~~~e~~~t~~~~~G~~lil~g~~~~~~~~~~ 280 (296)
++++.+.+|+ ++++.||+|..+++.|..+-...+.+
T Consensus 282 i~lS~i~f~h-~~s~~q~~g~~iVFg~i~l~~~~k~~ 317 (327)
T KOG1581|consen 282 IMLSCIVFGH-PLSSEQWLGVLIVFGGIFLEILLKKK 317 (327)
T ss_pred HHHHHHHhCC-ccchhhccCeeeehHHHHHHHHHHHh
Confidence 9999999996 99999999999999998887776655
No 19
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=99.89 E-value=9.2e-23 Score=162.24 Aligned_cols=257 Identities=15% Similarity=0.122 Sum_probs=216.6
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHhcCCccccccChhhhhHHHHHHHHHHHHHHHHhhhhcccchhHHHHHHhhHHHHHHH
Q 022511 14 YAHSMTLLTLQQLATALLIQAGRQMGYTKSKAIDLMTAKKLLPVSLFYNANVAFALASLKGVNIPMYIAIKRLTPLAVLV 93 (296)
Q Consensus 14 ~~~p~~l~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~s~~~~l~~~~pv~~~l 93 (296)
|.|..+++++|.....+..-++...+ +..+.++..-+.....+.-|-+.+...|.|++++|..+..+-++..|+-+++
T Consensus 50 FTfalaLVf~qC~~N~vfAkvl~~ir--~~~~~D~t~~~~YaAcs~sYLlAMVssN~Alq~vpYPTqVlgKScKPIPVMi 127 (337)
T KOG1580|consen 50 FTFALALVFFQCTANTVFAKVLFLIR--KKTEIDNTPTKMYAACSASYLLAMVSSNQALQYVPYPTQVLGKSCKPIPVMI 127 (337)
T ss_pred ehHHHHHHHHHHHHHHHHHHhheeec--ccccccCCcchHHHHHHHHHHHHHHhccchhcccCCcHHHhcccCCCcceee
Confidence 45566688888888777665544432 2233443344778888899999999999999999999999999999999999
Q ss_pred HHHHhcCccCCccchhhhhhhhhhhHhhhcCC-------cccchhHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHH
Q 022511 94 AGFFSGKGKPTTQVTLSVLLTATGCVIAALGD-------FSFDLSGYSMALTSVFFQTMYLVLVEKSGAEDGLSSVEIMF 166 (296)
Q Consensus 94 ~~~~~~~e~~~~~~~~~i~l~~~Gv~l~~~~~-------~~~~~~G~~~~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~ 166 (296)
++.++.+++++++++++++...+|+++....+ .+....|-++.++|.-..+.....+.|+...+..+...+++
T Consensus 128 lGVl~~~KsY~w~kY~cVL~IV~GValFmYK~~Kv~g~e~~t~g~GElLL~lSL~mDGlTg~~Qdrira~yq~~g~~MM~ 207 (337)
T KOG1580|consen 128 LGVLFAHKSYHWRKYCCVLMIVVGVALFMYKENKVGGAEDKTFGFGELLLILSLAMDGLTGSIQDRIRASYQRTGTSMMF 207 (337)
T ss_pred eehhhhcccccHHHHHHHHHHHHHHHHhhccccccCCCcccccchHHHHHHHHHHhcccchhHHHHHHHhhccCchhhHH
Confidence 99999999999999999999999999976532 12234899999999999999999999998888888899999
Q ss_pred HHhhhHHHHHHHHHHHhCCchhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHhhhhHHHHHHh
Q 022511 167 YNSFLSLPFLVFLIIVTGEFPGSLSLLFSKSNSFSFLVILILSLVMGIILNFTMFLCTIVNSALTTTIVGVLKGVGSTTL 246 (296)
Q Consensus 167 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~sa~~~s~~~~l~pi~~~~~ 246 (296)
|.++-+.+.+....+..||.|+....... .+..|+-+.+.++.+.+.+.+.+..+..++|.+-|++.+.++.++++.
T Consensus 208 ~~NlwStL~Lg~g~lfTGElweF~yF~~R---hP~~~~~l~l~ai~s~LGQ~fIF~tv~~FgPLtCSivTTTRKfFTil~ 284 (337)
T KOG1580|consen 208 YTNLWSTLYLGAGLLFTGELWEFFYFVQR---HPYVFWDLTLLAIASCLGQWFIFKTVEEFGPLTCSIVTTTRKFFTILI 284 (337)
T ss_pred HHHHHHHHHhhhhheehhhHHHHHHHHHh---ccHHHHHHHHHHHHHHhhhHHHHHHHHHhCCeeEEEEeehHHHHHHHH
Confidence 99999999999999999998887553222 345566777888889899999999999999999999999999999999
Q ss_pred hheeeCCcccchhhHHHHHHHHHHhHHHHH
Q 022511 247 GFVVLGGVQVRALNVTGLLINTAGGVWYSY 276 (296)
Q Consensus 247 ~~~~~~e~~~t~~~~~G~~lil~g~~~~~~ 276 (296)
|+++|++ +++..||+|.+++..|...=..
T Consensus 285 SVllf~n-pls~rQwlgtvlVF~aL~~D~~ 313 (337)
T KOG1580|consen 285 SVLLFNN-PLSGRQWLGTVLVFSALTADVV 313 (337)
T ss_pred HHHHhcC-cCcHHHHHHHHHHHHHhhhHhh
Confidence 9999985 9999999999999999766443
No 20
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=99.89 E-value=9.6e-21 Score=161.22 Aligned_cols=229 Identities=11% Similarity=0.057 Sum_probs=160.2
Q ss_pred eeeHHHHhcCCCchHHHHHHHHHHHHHHHHHHh-cCCcc-----ccccChh-hhhHHHHHHHHHHHHHHHHhhhhcccch
Q 022511 5 FINKAVIMQYAHSMTLLTLQQLATALLIQAGRQ-MGYTK-----SKAIDLM-TAKKLLPVSLFYNANVAFALASLKGVNI 77 (296)
Q Consensus 5 ~~nK~~l~~~~~p~~l~~~r~~~~~~~l~~~~~-~~~~~-----~~~~~~~-~~~~~l~~~~~~~~~~~~~~~al~~~~~ 77 (296)
+..|+ +.+. .|..+.++|.+++.+++.+... .++++ .++.+++ +.......+++.+.+..++++|++++|+
T Consensus 19 ~~~k~-~~~~-~~~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a~~~~~~ 96 (256)
T TIGR00688 19 YYSKL-LKPL-PATDILGHRMIWSFPFMLLSVTLFRQWAALIERLKRIQKRPLILSLLLCGLLIGFNWWLFIWAVNNGSS 96 (256)
T ss_pred HHHHH-hccC-CHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHcchH
Confidence 34576 4444 3778999999999877665442 22211 1112222 2334566777788999999999999999
Q ss_pred hHHHHHHhhHHHHHHHHHHHhcCccCCccchhhhhhhhhhhHhhhcCCcccchhHHHHHHHHHHHHHHHHHHHHHhccCC
Q 022511 78 PMYIAIKRLTPLAVLVAGFFSGKGKPTTQVTLSVLLTATGCVIAALGDFSFDLSGYSMALTSVFFQTMYLVLVEKSGAED 157 (296)
Q Consensus 78 s~~~~l~~~~pv~~~l~~~~~~~e~~~~~~~~~i~l~~~Gv~l~~~~~~~~~~~G~~~~l~s~~~~a~~~v~~k~~~~~~ 157 (296)
++++++.++.|+++++++++++|||++++++.++.++++|++++..++.+.+ .+++.+++++|.|.+..||..++
T Consensus 97 ~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~~~~~~~~----~~~l~aa~~~a~~~i~~~~~~~~- 171 (256)
T TIGR00688 97 LEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISNIVLKGSLP----WEALVLAFSFTAYGLIRKALKNT- 171 (256)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHcCCch----HHHHHHHHHHHHHHHHHhhcCCC-
Confidence 9999999999999999999999999999999999999999998765432222 45788999999999999987543
Q ss_pred CCCHHHHHHHHhhhHHHHHHHHHHHhCCchhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHhh
Q 022511 158 GLSSVEIMFYNSFLSLPFLVFLIIVTGEFPGSLSLLFSKSNSFSFLVILILSLVMGIILNFTMFLCTIVNSALTTTIVGV 237 (296)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~sa~~~s~~~~ 237 (296)
+..+.... .....+...+.....++ +.. +...+...|..++..|+.+...+.+++.++|+.++.++++..+
T Consensus 172 --~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~-----~~~~~~~~~~~l~~~g~~t~i~~~l~~~a~~~~~a~~~s~~~y 242 (256)
T TIGR00688 172 --DLAGFCLE-TLSLMPVAIYYLLQTDF-ATV-----QQTNPFPIWLLLVLAGLITGTPLLAFVIAANRLPLNLLGLLQY 242 (256)
T ss_pred --CcchHHHH-HHHHHHHHHHHHHHhcc-Ccc-----cccCchhHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 22222221 12222222222112111 110 1111223466666777777777788889999999999999999
Q ss_pred hhHHHHHHhhhe
Q 022511 238 LKGVGSTTLGFV 249 (296)
Q Consensus 238 l~pi~~~~~~~~ 249 (296)
++|+++.+++++
T Consensus 243 l~Pv~~~~~~~~ 254 (256)
T TIGR00688 243 IGPTIMMLCVSF 254 (256)
T ss_pred HHHHHHHHHHHH
Confidence 999999999875
No 21
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=99.88 E-value=4e-20 Score=159.91 Aligned_cols=247 Identities=18% Similarity=0.180 Sum_probs=185.4
Q ss_pred chH-HHHHHHHHHHHHHHHHHhcCCccccccChhhhhHHHHHHHHHHHHHHHHhhhhcccchhHHHHHHhhHHHHHHHHH
Q 022511 17 SMT-LLTLQQLATALLIQAGRQMGYTKSKAIDLMTAKKLLPVSLFYNANVAFALASLKGVNIPMYIAIKRLTPLAVLVAG 95 (296)
Q Consensus 17 p~~-l~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~s~~~~l~~~~pv~~~l~~ 95 (296)
|.. ..+.|...+..........+..+..+..++..+..+..++.......+.+.++++++++.++.+.++.|+++.+++
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~ 114 (292)
T COG0697 35 PFLFAAALRFLIAALLLLPLLLLEPRGLRPALRPWLLLLLLALLGLALPFLLLFLALKYTSASVASLIIGLLPLFTALLA 114 (292)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHhhcccccccccchHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHH
Confidence 444 6666988888774444433321111111112245555666678899999999999999999999999999999999
Q ss_pred H-HhcCccCCccchhhhhhhhhhhHhhhcCCcccc---hhHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHH-HHhh
Q 022511 96 F-FSGKGKPTTQVTLSVLLTATGCVIAALGDFSFD---LSGYSMALTSVFFQTMYLVLVEKSGAEDGLSSVEIMF-YNSF 170 (296)
Q Consensus 96 ~-~~~~e~~~~~~~~~i~l~~~Gv~l~~~~~~~~~---~~G~~~~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~-~~~~ 170 (296)
. +++|||++++++.++.+.++|++++..++...+ ..|+.+++.+++++|.+.+..|+.. + .++..... ++..
T Consensus 115 ~~~~~~e~~~~~~~~~~~~~~~Gv~lv~~~~~~~~~~~~~g~~~~l~a~~~~a~~~~~~~~~~-~--~~~~~~~~~~~~~ 191 (292)
T COG0697 115 VLLLLGERLSLLQILGILLALAGVLLILLGGGGGGILSLLGLLLALAAALLWALYTALVKRLS-R--LGPVTLALLLQLL 191 (292)
T ss_pred HHHHccCCCcHHHHHHHHHHHHhHHheecCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhc-C--CChHHHHHHHHHH
Confidence 7 777999999999999999999999887665543 5899999999999999999999986 3 36666665 4433
Q ss_pred hHHHHHHHHHHHhCCchhhhhhhhcccCchhHHHHHHHHHHHHHH-HHHHHHHHHhccChhHHHHHhhhhHHHHHHhhhe
Q 022511 171 LSLPFLVFLIIVTGEFPGSLSLLFSKSNSFSFLVILILSLVMGII-LNFTMFLCTIVNSALTTTIVGVLKGVGSTTLGFV 249 (296)
Q Consensus 171 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~sa~~~s~~~~l~pi~~~~~~~~ 249 (296)
............+.. ...+...+..+...|+.+.. .+.+++...++.++...+...+++|+.+.+++++
T Consensus 192 --~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l 261 (292)
T COG0697 192 --LALLLLLLFFLSGFG--------APILSRAWLLLLYLGVFSTGLAYLLWYYALRLLGASLVALLSLLEPVFAALLGVL 261 (292)
T ss_pred --HHHHHHHHHHhcccc--------ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHH
Confidence 112221111111111 11134456677777777775 5577889999999999999999999999999999
Q ss_pred eeCCcccchhhHHHHHHHHHHhHHHHHH
Q 022511 250 VLGGVQVRALNVTGLLINTAGGVWYSYA 277 (296)
Q Consensus 250 ~~~e~~~t~~~~~G~~lil~g~~~~~~~ 277 (296)
++|| +++..+++|..+++.|+......
T Consensus 262 ~~~e-~~~~~~~~G~~li~~g~~l~~~~ 288 (292)
T COG0697 262 LLGE-PLSPAQLLGAALVVLGVLLASLR 288 (292)
T ss_pred HhCC-CCcHHHHHHHHHHHHHHHHHhcc
Confidence 9985 99999999999999999888765
No 22
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=99.84 E-value=5.3e-19 Score=142.47 Aligned_cols=239 Identities=15% Similarity=0.110 Sum_probs=193.4
Q ss_pred chHHHHHHHHHHHHHHHHHHhcCCccccccChhhhhHHHHHHHHHHHHHHHHhhhhcccchhHHHHHHhhHHHHHHHHHH
Q 022511 17 SMTLLTLQQLATALLIQAGRQMGYTKSKAIDLMTAKKLLPVSLFYNANVAFALASLKGVNIPMYIAIKRLTPLAVLVAGF 96 (296)
Q Consensus 17 p~~l~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~s~~~~l~~~~pv~~~l~~~ 96 (296)
|...+..|..++++++....+-.+ +++++++++..+.-|+.....+.++|.+++.+|.+.+..+..+-|+.+++++.
T Consensus 40 ~~g~t~lRl~~aaLIll~l~RPwr---~r~~~~~~~~~~~yGvsLg~MNl~FY~si~riPlGiAVAiEF~GPL~vA~~~s 116 (292)
T COG5006 40 AAGVTALRLAIAALILLALFRPWR---RRLSKPQRLALLAYGVSLGGMNLLFYLSIERIPLGIAVAIEFTGPLAVALLSS 116 (292)
T ss_pred hhhHHHHHHHHHHHHHHHHhhHHH---hccChhhhHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhccHHHHHHHhc
Confidence 455999999999988877654222 35566777899999999999999999999999999999999999999988762
Q ss_pred HhcCccCCccchhhhhhhhhhhHhhhc---CCcccchhHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHhhhHH
Q 022511 97 FSGKGKPTTQVTLSVLLTATGCVIAAL---GDFSFDLSGYSMALTSVFFQTMYLVLVEKSGAEDGLSSVEIMFYNSFLSL 173 (296)
Q Consensus 97 ~~~~e~~~~~~~~~i~l~~~Gv~l~~~---~~~~~~~~G~~~~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~ 173 (296)
| +.++...+.+.+.|..+..- +..+.|..|..+++.+..||+.|.+..||..+. .+..+-+...+..++
T Consensus 117 ----R--r~~d~vwvaLAvlGi~lL~p~~~~~~~lDp~Gv~~Al~AG~~Wa~YIv~G~r~g~~--~~g~~g~a~gm~vAa 188 (292)
T COG5006 117 ----R--RLRDFVWVALAVLGIWLLLPLGQSVWSLDPVGVALALGAGACWALYIVLGQRAGRA--EHGTAGVAVGMLVAA 188 (292)
T ss_pred ----c--chhhHHHHHHHHHHHHhheeccCCcCcCCHHHHHHHHHHhHHHHHHHHHcchhccc--CCCchHHHHHHHHHH
Confidence 2 34566677888889887643 335678999999999999999999999998753 256666667777888
Q ss_pred HHHHHHHHHhCCchhhhhhhhcccCchhHHHHHHHHHHHHHHHHHH-HHHHHhccChhHHHHHhhhhHHHHHHhhheeeC
Q 022511 174 PFLVFLIIVTGEFPGSLSLLFSKSNSFSFLVILILSLVMGIILNFT-MFLCTIVNSALTTTIVGVLKGVGSTTLGFVVLG 252 (296)
Q Consensus 174 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~sa~~~s~~~~l~pi~~~~~~~~~~~ 252 (296)
++..|+-..... +...++.....-+..++++..+.|+ -..++++.++.+++++..+||.++.+.|++++|
T Consensus 189 viv~Pig~~~ag---------~~l~~p~ll~laLgvavlSSalPYsLEmiAL~rlp~~~F~~LlSLePa~aAl~G~i~L~ 259 (292)
T COG5006 189 LIVLPIGAAQAG---------PALFSPSLLPLALGVAVLSSALPYSLEMIALRRLPARTFGTLLSLEPALAALSGLIFLG 259 (292)
T ss_pred HHHhhhhhhhcc---------hhhcChHHHHHHHHHHHHhcccchHHHHHHHhhCChhHHHHHHHhhHHHHHHHHHHHhc
Confidence 888887664322 2223556666778888888888865 446789999999999999999999999999998
Q ss_pred CcccchhhHHHHHHHHHHhHHHHH
Q 022511 253 GVQVRALNVTGLLINTAGGVWYSY 276 (296)
Q Consensus 253 e~~~t~~~~~G~~lil~g~~~~~~ 276 (296)
| ++|+.||.|++.++.++.-...
T Consensus 260 e-~ls~~qwlaI~~ViaAsaG~~l 282 (292)
T COG5006 260 E-TLTLIQWLAIAAVIAASAGSTL 282 (292)
T ss_pred C-CCCHHHHHHHHHHHHHHhcccc
Confidence 5 9999999999999999775544
No 23
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=99.83 E-value=2.5e-22 Score=162.61 Aligned_cols=253 Identities=15% Similarity=0.135 Sum_probs=198.7
Q ss_pred chHHHHHHHHHHHHHHHHHHhcCCccccccChhhhhHHHHHHHHHHHHHHHHhhhhcccchhHHHHHHhhHHHHHHHHHH
Q 022511 17 SMTLLTLQQLATALLIQAGRQMGYTKSKAIDLMTAKKLLPVSLFYNANVAFALASLKGVNIPMYIAIKRLTPLAVLVAGF 96 (296)
Q Consensus 17 p~~l~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~s~~~~l~~~~pv~~~l~~~ 96 (296)
|..+.-.|+++-.+...++....+... -.+....+.++..|+.........++|++|+|.+.+.++..++|+++.++++
T Consensus 64 p~e~a~~r~l~~mlit~pcliy~~~~v-~gp~g~R~~LiLRg~mG~tgvmlmyya~~~mslaDA~vItFssPvft~ifaw 142 (346)
T KOG4510|consen 64 PMELASFRLLVRMLITYPCLIYYMQPV-IGPEGKRKWLILRGFMGFTGVMLMYYALMYMSLADAVVITFSSPVFTIIFAW 142 (346)
T ss_pred hhHhhhhhhhhehhhhheEEEEEeeee-ecCCCcEEEEEeehhhhhhHHHHHHHHHhhcchhheEEEEecChHHHHHHHH
Confidence 666666665444444444322111111 0111122567788999999999999999999999999999999999999999
Q ss_pred HhcCccCCccchhhhhhhhhhhHhhhcCC--------------cccchhHHHHHHHHHHHHHHHHHHHHHhccCCCCCHH
Q 022511 97 FSGKGKPTTQVTLSVLLTATGCVIAALGD--------------FSFDLSGYSMALTSVFFQTMYLVLVEKSGAEDGLSSV 162 (296)
Q Consensus 97 ~~~~e~~~~~~~~~i~l~~~Gv~l~~~~~--------------~~~~~~G~~~~l~s~~~~a~~~v~~k~~~~~~~~~~~ 162 (296)
.++|||.++.+.++....+.|++++..+. .+.+.+|.+.++.++++-|--.+..|++.|+. +..
T Consensus 143 ~~LkE~~t~~eaL~s~itl~GVVLIvRPpFlFG~~t~g~~~s~~~~~~~gt~aai~s~lf~asvyIilR~iGk~~--h~~ 220 (346)
T KOG4510|consen 143 AFLKEPFTKFEALGSLITLLGVVLIVRPPFLFGDTTEGEDSSQVEYDIPGTVAAISSVLFGASVYIILRYIGKNA--HAI 220 (346)
T ss_pred HHHcCCCcHHHHHHHHHhhheEEEEecCCcccCCCccccccccccccCCchHHHHHhHhhhhhHHHHHHHhhccc--cEE
Confidence 99999999999999999999999975421 12346889999999999999999999987764 666
Q ss_pred HHHHHHhhhHHHHHHHHHHHhCCchhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHhhhhHHH
Q 022511 163 EIMFYNSFLSLPFLVFLIIVTGEFPGSLSLLFSKSNSFSFLVILILSLVMGIILNFTMFLCTIVNSALTTTIVGVLKGVG 242 (296)
Q Consensus 163 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~sa~~~s~~~~l~pi~ 242 (296)
....|..+.+.+..++.....|+. ..++....|+++...|+.+++.+.+....+++--|...++..+.+-++
T Consensus 221 msvsyf~~i~lV~s~I~~~~ig~~--------~lP~cgkdr~l~~~lGvfgfigQIllTm~lQiErAGpvaim~~~dvvf 292 (346)
T KOG4510|consen 221 MSVSYFSLITLVVSLIGCASIGAV--------QLPHCGKDRWLFVNLGVFGFIGQILLTMGLQIERAGPVAIMTYTDVVF 292 (346)
T ss_pred EEehHHHHHHHHHHHHHHhhccce--------ecCccccceEEEEEehhhhhHHHHHHHHHhhhhccCCeehhhHHHHHH
Confidence 667777777777777766655542 222344567788899999999999999898888888889999999999
Q ss_pred HHHhhheeeCCcccchhhHHHHHHHHHHhHHHHHHHHhh
Q 022511 243 STTLGFVVLGGVQVRALNVTGLLINTAGGVWYSYAKYQQ 281 (296)
Q Consensus 243 ~~~~~~~~~~e~~~t~~~~~G~~lil~g~~~~~~~~~~~ 281 (296)
+.++.+++||| .+|++.|+|+++++.+.++....|..+
T Consensus 293 Af~wqv~ff~~-~Pt~ws~~Ga~~vvsS~v~~a~~kwa~ 330 (346)
T KOG4510|consen 293 AFFWQVLFFGH-WPTIWSWVGAVMVVSSTVWVALKKWAG 330 (346)
T ss_pred HHHHHHHHhcC-CChHHHhhceeeeehhHHHHHHHHHhc
Confidence 99999999996 999999999999999998887766544
No 24
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=99.80 E-value=1.5e-19 Score=147.28 Aligned_cols=256 Identities=20% Similarity=0.208 Sum_probs=200.9
Q ss_pred HHHHHHHHHHHHHHHHHhcCCccccccChhhhhHHHHHHHHHHHHHHHHhhhhcc-cchhHHHHHHhhHHHHHHHHHHHh
Q 022511 20 LLTLQQLATALLIQAGRQMGYTKSKAIDLMTAKKLLPVSLFYNANVAFALASLKG-VNIPMYIAIKRLTPLAVLVAGFFS 98 (296)
Q Consensus 20 l~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~-~~~s~~~~l~~~~pv~~~l~~~~~ 98 (296)
+++.|+++-++-.+++...-...+++.|. +.+...-..+...+.++|+++++ +|.....++++..++.++++++++
T Consensus 36 ITFaqFlFia~eGlif~skf~~~k~kipl---k~Y~i~V~mFF~vnv~NN~al~f~I~~PlHiIfRsgsll~nM~~g~il 112 (330)
T KOG1583|consen 36 ITFAQFLFIATEGLIFTSKFFTVKPKIPL---KDYAITVAMFFIVNVTNNYALKFNIPMPLHIIFRSGSLLANMILGWIL 112 (330)
T ss_pred hHHHHHHHHHHhceeeeccccccCCCCch---hhhheehheeeeeeeeccceeeecccceEEEEEecCcHHHHHHHHHHh
Confidence 88899988877766654321112255665 55666566677788899999986 899999999999999999999999
Q ss_pred cCccCCccchhhhhhhhhhhHhhhc---CCcc--------------cc--hhHHHHHHHHHHHHHHHHHHHHHhccCCCC
Q 022511 99 GKGKPTTQVTLSVLLTATGCVIAAL---GDFS--------------FD--LSGYSMALTSVFFQTMYLVLVEKSGAEDGL 159 (296)
Q Consensus 99 ~~e~~~~~~~~~i~l~~~Gv~l~~~---~~~~--------------~~--~~G~~~~l~s~~~~a~~~v~~k~~~~~~~~ 159 (296)
.|+|++.+|+.++....+|+++.+. .|.. .. ..|+.+...+.+..|.-.++++...++||-
T Consensus 113 ~~k~Ys~~Qy~Sv~~iTiGiiIcTl~s~~d~~~~~~~l~~~~~~~~~~~w~iGi~lL~~al~~sa~mgiyqE~~Y~kyGK 192 (330)
T KOG1583|consen 113 LGKRYSLRQYSSVLMITIGIIICTLFSSKDGRSKLSGLDSGSAQSDFFWWLIGIALLVFALLLSAYMGIYQETTYQKYGK 192 (330)
T ss_pred ccceeehhhhhhHHhhhhhheeEEeecCcchhhhhcccccCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999998653 1110 01 358888889999999999999999999999
Q ss_pred CHHHHHHHHhhhHHHHHHHHHHHhCCchhhhhhhhcc---------cCchhHHHHHHHHHHHHHHHHHHHHHHHhccChh
Q 022511 160 SSVEIMFYNSFLSLPFLVFLIIVTGEFPGSLSLLFSK---------SNSFSFLVILILSLVMGIILNFTMFLCTIVNSAL 230 (296)
Q Consensus 160 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~sa~ 230 (296)
++-+.++|+..++.|..+.. .+|..+.++..... ..-+..|+.++.+++..+.+--..+.+..++++.
T Consensus 193 h~~EalFytH~LsLP~Flf~---~~div~~~~~~~~se~~~~p~~g~~vP~~~~yLl~n~L~Qy~CikgVy~L~te~~sL 269 (330)
T KOG1583|consen 193 HWKEALFYTHFLSLPLFLFM---GDDIVSHWRLAFKSESYLIPLLGFKVPSMWVYLLFNVLTQYFCIKGVYILTTETSSL 269 (330)
T ss_pred ChHHHHHHHHHhccchHHHh---cchHHHHHHHHhcCcceeccccCccccHHHHHHHHHHHHHHHHHHhhhhhhceecce
Confidence 99999999998777765532 22222222111110 1134567888888888888777677788999999
Q ss_pred HHHHHhhhhHHHHHHhhheeeCCcccchhhHHHHHHHHHHhHHHHHHHHhhh
Q 022511 231 TTTIVGVLKGVGSTTLGFVVLGGVQVRALNVTGLLINTAGGVWYSYAKYQQK 282 (296)
Q Consensus 231 ~~s~~~~l~pi~~~~~~~~~~~e~~~t~~~~~G~~lil~g~~~~~~~~~~~~ 282 (296)
++++.-++++.++.++|.+.|+ +++|+.+|+|..++..|..+|+....+++
T Consensus 270 TVTlvltlRKFvSLl~SiiyF~-Npft~~h~lGa~lVF~Gt~~fa~~~~~~~ 320 (330)
T KOG1583|consen 270 TVTLVLTLRKFVSLLFSIIYFE-NPFTPWHWLGAALVFFGTLLFANVWNHPK 320 (330)
T ss_pred EEEEeeeHHHHHHHhheeeEec-CCCCHHHHHHHHHHHHHHHHHHHHHcCcc
Confidence 9999999999999999999996 59999999999999999999987665443
No 25
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=99.79 E-value=1.9e-16 Score=131.07 Aligned_cols=254 Identities=13% Similarity=0.059 Sum_probs=193.2
Q ss_pred chHHHHHHHHHHHHHHHHHHhc-CC-cccc--ccChhhhhHHHHHHHHHHHHHHHHhhhhcccchhHHHHHHhhHHHHHH
Q 022511 17 SMTLLTLQQLATALLIQAGRQM-GY-TKSK--AIDLMTAKKLLPVSLFYNANVAFALASLKGVNIPMYIAIKRLTPLAVL 92 (296)
Q Consensus 17 p~~l~~~r~~~~~~~l~~~~~~-~~-~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~s~~~~l~~~~pv~~~ 92 (296)
+..+...|.+-+.......... |+ .+.+ ..+++.+......+++...+...+.+|.++-.+-++++=.+..|++..
T Consensus 34 ~~eIlahRviwS~~~~l~ll~~~r~~~~~~~~~~~p~~~~~~~l~a~li~~nW~lfiWAvn~g~~leaSLGY~InPL~~V 113 (293)
T COG2962 34 ATEILAHRVIWSFPFMLALLFLLRQWRELKQLLKQPKTLLMLALTALLIGLNWWLFIWAVNNGHVLEASLGYFINPLVNV 113 (293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhheecCCCchhHHHhHHHHHHHHHH
Confidence 4458889988877665554432 21 1111 122334445556677788999999999999888889999999999999
Q ss_pred HHHHHhcCccCCccchhhhhhhhhhhHhhhcCCcccchhHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHhhhH
Q 022511 93 VAGFFSGKGKPTTQVTLSVLLTATGCVIAALGDFSFDLSGYSMALTSVFFQTMYLVLVEKSGAEDGLSSVEIMFYNSFLS 172 (296)
Q Consensus 93 l~~~~~~~e~~~~~~~~~i~l~~~Gv~l~~~~~~~~~~~G~~~~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~ 172 (296)
+++.+++|||+++.||.++.++.+||..-.....+.++..+ .=+++|+.|...-|+. + .|+.+-...-.+.-
T Consensus 114 llG~lflkErls~~Q~iAV~lA~~GV~~~~~~~g~lpwval----~la~sf~~Ygl~RK~~-~---v~a~~g~~lE~l~l 185 (293)
T COG2962 114 LLGRLFLKERLSRLQWIAVGLAAAGVLIQTWLLGSLPWVAL----ALALSFGLYGLLRKKL-K---VDALTGLTLETLLL 185 (293)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHcCCCcHHHH----HHHHHHHHHHHHHHhc-C---CchHHhHHHHHHHH
Confidence 99999999999999999999999999998777777775544 4567899999764443 2 47777666666655
Q ss_pred HHHHHHHHHHhCCchhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHhhhhHHHHHHhhheeeC
Q 022511 173 LPFLVFLIIVTGEFPGSLSLLFSKSNSFSFLVILILSLVMGIILNFTMFLCTIVNSALTTTIVGVLKGVGSTTLGFVVLG 252 (296)
Q Consensus 173 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~sa~~~s~~~~l~pi~~~~~~~~~~~ 252 (296)
.|..+.+....++..+. ...++...+.++...|..+..--.+...+-|+.+-++.++++|.+|....+++++++|
T Consensus 186 ~p~al~yl~~l~~~~~~-----~~~~~~~~~~LLv~aG~vTavpL~lf~~aa~~lpls~~G~lqYi~Ptl~fllav~i~~ 260 (293)
T COG2962 186 LPVALIYLLFLADSGQF-----LQQNANSLWLLLVLAGLVTAVPLLLFAAAAKRLPLSTLGFLQYIEPTLMFLLAVLIFG 260 (293)
T ss_pred hHHHHHHHHHHhcCchh-----hhcCCchHHHHHHHhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 66666555555554431 1112445677788888887766666667889999999999999999999999999998
Q ss_pred CcccchhhHHHHHHHHHHhHHHHHHHHhhhhc
Q 022511 253 GVQVRALNVTGLLINTAGGVWYSYAKYQQKKK 284 (296)
Q Consensus 253 e~~~t~~~~~G~~lil~g~~~~~~~~~~~~~~ 284 (296)
| +++..+....+++..|..+|..+..+++|+
T Consensus 261 E-~~~~~~~~~F~~IW~aL~l~~~d~l~~~r~ 291 (293)
T COG2962 261 E-PFDSDQLVTFAFIWLALALFSIDGLYTARK 291 (293)
T ss_pred C-CCCHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5 999999999999999999999877655444
No 26
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=99.79 E-value=1.5e-17 Score=139.24 Aligned_cols=214 Identities=14% Similarity=0.155 Sum_probs=169.3
Q ss_pred ChhhhhHHHHHHHHHHHHHHHHhhhhcccchhHHHHHHhhHHHHHHHHHHHhcCccCCccchhhhhhhhhhhHhhhcCCc
Q 022511 47 DLMTAKKLLPVSLFYNANVAFALASLKGVNIPMYIAIKRLTPLAVLVAGFFSGKGKPTTQVTLSVLLTATGCVIAALGDF 126 (296)
Q Consensus 47 ~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~s~~~~l~~~~pv~~~l~~~~~~~e~~~~~~~~~i~l~~~Gv~l~~~~~~ 126 (296)
++++..++...+++|...+.+.+.++++++++.++++.++..+++++++++++|||.+++||.++.+.++|+++...++.
T Consensus 13 ~~~~~~~~~vPA~lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~ 92 (244)
T PF04142_consen 13 SPKDTLKLAVPALLYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSSS 92 (244)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCCc
Confidence 35566778888999999999999999999999999999999999999999999999999999999999999998643111
Q ss_pred -----------------ccchhHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHhhhHHHHHHHHHHHhCCchhh
Q 022511 127 -----------------SFDLSGYSMALTSVFFQTMYLVLVEKSGAEDGLSSVEIMFYNSFLSLPFLVFLIIVTGEFPGS 189 (296)
Q Consensus 127 -----------------~~~~~G~~~~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 189 (296)
+....|.+..+.++++.++..++.+|+.|+.+.+.+.....-...+.++.++..... |..+.
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~G~~~vl~~~~~S~~agVy~E~~lK~~~~s~~~~N~qL~~~gi~~~~~~~~~~-~~~~~ 171 (244)
T PF04142_consen 93 QSSDNSSSSSVHHDASNQNPLLGLLAVLAAAFLSGFAGVYFEKLLKRSNVSLWIQNMQLYLFGILFNLLALLLS-DGSAI 171 (244)
T ss_pred cccccccccccccccccchhHhHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHhcc-ccccc
Confidence 112589999999999999999999999998877777777666777777776665443 22222
Q ss_pred hhhhhcccCchhHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHhhhhHHHHHHhhheeeCCcccchhhHHHHHH
Q 022511 190 LSLLFSKSNSFSFLVILILSLVMGIILNFTMFLCTIVNSALTTTIVGVLKGVGSTTLGFVVLGGVQVRALNVTGLLI 266 (296)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~sa~~~s~~~~l~pi~~~~~~~~~~~e~~~t~~~~~G~~l 266 (296)
.+..+-+.++...|..+....+.|... -..+|+.+...=+....+..+++.+.++.+|| .++|....+|..+
T Consensus 172 ~~~g~f~G~~~~~~~~i~~~a~gGllv----a~v~KyadnI~K~fa~a~siv~t~~~s~~lf~-~~~s~~f~lg~~~ 243 (244)
T PF04142_consen 172 SESGFFHGYSWWVWIVIFLQAIGGLLV----AFVLKYADNIVKGFATAVSIVLTAVLSVLLFG-FPPSLSFLLGAAL 243 (244)
T ss_pred ccCCchhhcchHHHHHHHHHHHhhHHH----HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhC-CCCchHHhhheec
Confidence 221122333445555555555544443 34579999999999999999999999999998 5999999999765
No 27
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=99.77 E-value=3.4e-18 Score=145.16 Aligned_cols=227 Identities=18% Similarity=0.192 Sum_probs=183.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHhhhhcccchhHHHHHHhhHHHHHHHHHHHhcCccCCccchhhhhhhhhhhHhhhcCCc--
Q 022511 49 MTAKKLLPVSLFYNANVAFALASLKGVNIPMYIAIKRLTPLAVLVAGFFSGKGKPTTQVTLSVLLTATGCVIAALGDF-- 126 (296)
Q Consensus 49 ~~~~~~l~~~~~~~~~~~~~~~al~~~~~s~~~~l~~~~pv~~~l~~~~~~~e~~~~~~~~~i~l~~~Gv~l~~~~~~-- 126 (296)
+..+..+..+.+....++.+|.|+.+++++..+++.+++-+|+..++.++.+||.+..|.+++.+.+.|+++++.++.
T Consensus 157 ~~ak~sl~fc~lWF~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~sKllav~~si~GViiVt~~~s~~ 236 (416)
T KOG2765|consen 157 QTAKLSLFFCPLWFLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLSKLLAVFVSIAGVIIVTMGDSKQ 236 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHHHHHHHHHhhccEEEEEeccccc
Confidence 445566677777889999999999999999999999999999999999999999999999999999999999887532
Q ss_pred ----c--cchhHHHHHHHHHHHHHHHHHHHHHhccCC--CCCHHHHHHHHhhhHHHHHHHHHHHhCCchhhhhhhhcccC
Q 022511 127 ----S--FDLSGYSMALTSVFFQTMYLVLVEKSGAED--GLSSVEIMFYNSFLSLPFLVFLIIVTGEFPGSLSLLFSKSN 198 (296)
Q Consensus 127 ----~--~~~~G~~~~l~s~~~~a~~~v~~k~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 198 (296)
. ....|.++++++++.||.|.++.||...++ +.|--....|..++..+++.|...+.... .... ++.+.
T Consensus 237 ~~~~~a~~~llG~llaL~sA~~YavY~vllk~~~~~eg~rvdi~lffGfvGLfnllllwP~l~iL~~~-~~e~--F~lP~ 313 (416)
T KOG2765|consen 237 NSDLPASRPLLGNLLALLSALLYAVYTVLLKRKIGDEGERVDIQLFFGFVGLFNLLLLWPPLIILDFF-GEER--FELPS 313 (416)
T ss_pred cccCCccchhHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHhHHHHHHHHh-ccCc--ccCCC
Confidence 1 237899999999999999999999987766 46666666688888888888766654221 1111 12222
Q ss_pred chhHHHHHHHHHHHHHHHH-HHHHHHHhccChhHHHHHhhhhHHHHHHhhheeeCCcccchhhHHHHHHHHHHhHHHHHH
Q 022511 199 SFSFLVILILSLVMGIILN-FTMFLCTIVNSALTTTIVGVLKGVGSTTLGFVVLGGVQVRALNVTGLLINTAGGVWYSYA 277 (296)
Q Consensus 199 ~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~sa~~~s~~~~l~pi~~~~~~~~~~~e~~~t~~~~~G~~lil~g~~~~~~~ 277 (296)
... ...+++.+..+.... +++..+.--++|..+++-..+..+++++.+.++=| .++++.+++|.+.+++|.+..+..
T Consensus 314 ~~q-~~~vv~~~ligtvvSDylW~~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k~-~~~S~~~iiGsi~Ifv~Fv~vn~~ 391 (416)
T KOG2765|consen 314 STQ-FSLVVFNNLIGTVVSDYLWAKAVLLTSPLVVTLGMSLTIPLAMFADVLIKG-KHPSALYIIGSIPIFVGFVIVNIS 391 (416)
T ss_pred Cce-eEeeeHhhHHHHHHHHHHHHHHHHhccchhheeeeeEeeeHHHHHHHHHcC-CCCCHHHHHHHHHHHHHHhheecc
Confidence 222 234455566666666 99999999999999999999999999999988766 699999999999999999998876
Q ss_pred HHh
Q 022511 278 KYQ 280 (296)
Q Consensus 278 ~~~ 280 (296)
.+.
T Consensus 392 ~~~ 394 (416)
T KOG2765|consen 392 SEN 394 (416)
T ss_pred ccc
Confidence 543
No 28
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=99.77 E-value=2.5e-16 Score=133.99 Aligned_cols=227 Identities=14% Similarity=0.122 Sum_probs=182.0
Q ss_pred hhhhhHHHHHHHHHHHHHHHHhhhhcccchhHHHHHHhhHHHHHHHHHHHhcCccCCccchhhhhhhhhhhHhhhcCC--
Q 022511 48 LMTAKKLLPVSLFYNANVAFALASLKGVNIPMYIAIKRLTPLAVLVAGFFSGKGKPTTQVTLSVLLTATGCVIAALGD-- 125 (296)
Q Consensus 48 ~~~~~~~l~~~~~~~~~~~~~~~al~~~~~s~~~~l~~~~pv~~~l~~~~~~~e~~~~~~~~~i~l~~~Gv~l~~~~~-- 125 (296)
+++..++...+++|+..+.+.+.++.+.+++++++..++..+.++++..++++||.++.||.++++.+.|+.+.-.+.
T Consensus 89 ~~~~lk~~vPa~iYalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ~~~~~ 168 (345)
T KOG2234|consen 89 PRETLKVSVPALIYALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQLPSLS 168 (345)
T ss_pred hHHHHHHHHHHHHHHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhccCCC
Confidence 445566777789999999999999999999999999999999999999999999999999999999999999976211
Q ss_pred ---------cccchhHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHhhhHHHHHHHHHHHhCCchhhhhhhhcc
Q 022511 126 ---------FSFDLSGYSMALTSVFFQTMYLVLVEKSGAEDGLSSVEIMFYNSFLSLPFLVFLIIVTGEFPGSLSLLFSK 196 (296)
Q Consensus 126 ---------~~~~~~G~~~~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 196 (296)
.+..+.|....+.++++.++..++.+|++|+.+.+.|........++.++.+......+.....++. +-+
T Consensus 169 ~~~a~~~~~~~n~~~G~~avl~~c~~SgfAgvYfEkiLK~s~~s~wi~NiqL~~~g~~f~~l~~~~~d~~~i~~~g-ff~ 247 (345)
T KOG2234|consen 169 PTGAKSESSAQNPFLGLVAVLVACFLSGFAGVYFEKILKGSNVSLWIRNIQLYFFGILFNLLTILLQDGEAINEYG-FFY 247 (345)
T ss_pred CCCccCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhhccccccccCC-ccc
Confidence 1223689999999999999999999999988777777777776777777766655544221111222 234
Q ss_pred cCchhHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHhhhhHHHHHHhhheeeCCcccchhhHHHHHHHHHHhHHHHH
Q 022511 197 SNSFSFLVILILSLVMGIILNFTMFLCTIVNSALTTTIVGVLKGVGSTTLGFVVLGGVQVRALNVTGLLINTAGGVWYSY 276 (296)
Q Consensus 197 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~sa~~~s~~~~l~pi~~~~~~~~~~~e~~~t~~~~~G~~lil~g~~~~~~ 276 (296)
.++...|..++..++.|..... .+|+.+...=.....+..+++.+.++.+|| .++|....+|..+++.++.+|+.
T Consensus 248 G~s~~vw~vVl~~a~gGLlvs~----v~KyADnIlK~f~~s~aiilt~v~S~~Lf~-~~~t~~F~lG~~lVi~Si~lY~~ 322 (345)
T KOG2234|consen 248 GYSSIVWLVVLLNAVGGLLVSL----VMKYADNILKGFSTSVAIILTTVASIALFD-FQLTLYFLLGALLVILSIFLYSL 322 (345)
T ss_pred cccHHHHHHHHHHhccchhHHH----HHHHhHHHHHHHHHHHHHHHHHHHHHHHcc-CCchHHHHHHHHHHHHHHHHhhc
Confidence 4566778777777777766654 357777777777777888999999998887 59999999999999999999995
Q ss_pred HHHh
Q 022511 277 AKYQ 280 (296)
Q Consensus 277 ~~~~ 280 (296)
.+.+
T Consensus 323 ~P~~ 326 (345)
T KOG2234|consen 323 YPAR 326 (345)
T ss_pred CCcc
Confidence 5443
No 29
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=99.76 E-value=1.7e-16 Score=137.13 Aligned_cols=234 Identities=14% Similarity=0.127 Sum_probs=171.0
Q ss_pred HHHHHHHHHHHHHhcCCccccccChhhhhHHHHHHHHHHHHHHHHhhhhcccchhHHHHHHh-hHHHHHHHHHHHhcCcc
Q 022511 24 QQLATALLIQAGRQMGYTKSKAIDLMTAKKLLPVSLFYNANVAFALASLKGVNIPMYIAIKR-LTPLAVLVAGFFSGKGK 102 (296)
Q Consensus 24 r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~s~~~~l~~-~~pv~~~l~~~~~~~e~ 102 (296)
|..++.+++.......+ +++...++.+..-+..|.+.+..+.+++.|.++++++.+..+.+ +.|++..+.+.+++|||
T Consensus 33 ~~~~g~l~~~~~~~~~~-~~~~~~~~~~~~g~l~G~~w~ig~~~~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~ 111 (290)
T TIGR00776 33 GTTFGALILSIAIAIFV-LPEFWALSIFLVGLLSGAFWALGQINQFKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEW 111 (290)
T ss_pred HHHHHHHHHHHHHHHHh-CCcccccHHHHHHHHHHHHHHhhhhhHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhc
Confidence 66666665555433211 11111233333344555567888899999999999999988888 88899999999999999
Q ss_pred CCccc----hhhhhhhhhhhHhhhcCCcc-------cc-hhHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHhh
Q 022511 103 PTTQV----TLSVLLTATGCVIAALGDFS-------FD-LSGYSMALTSVFFQTMYLVLVEKSGAEDGLSSVEIMFYNSF 170 (296)
Q Consensus 103 ~~~~~----~~~i~l~~~Gv~l~~~~~~~-------~~-~~G~~~~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~ 170 (296)
.++++ +.++++.++|+++....+.+ .+ ..|+.++++|+++|+.|.+..|+. + .|+.+..+.+..
T Consensus 112 ~t~~~~~~~~~g~~l~l~G~~l~~~~~~~~~~~~~~~~~~~Gi~~~l~sg~~y~~~~~~~~~~--~--~~~~~~~~~~~~ 187 (290)
T TIGR00776 112 STSIQTLLGLLALILIIIGVYLTSRSKDKSAGIKSEFNFKKGILLLLMSTIGYLVYVVVAKAF--G--VDGLSVLLPQAI 187 (290)
T ss_pred cchHHHHHHHHHHHHHHHhHheEEeccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHc--C--CCcceehhHHHH
Confidence 99999 99999999999987542211 33 689999999999999999999976 2 378877554443
Q ss_pred ----hHHHHHHHHHHHhCCchhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHHHHHHh-ccChhHHHHHhhhhHHHHHH
Q 022511 171 ----LSLPFLVFLIIVTGEFPGSLSLLFSKSNSFSFLVILILSLVMGIILNFTMFLCTI-VNSALTTTIVGVLKGVGSTT 245 (296)
Q Consensus 171 ----~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~sa~~~s~~~~l~pi~~~~ 245 (296)
.+.+...+. . +.. +. .+.. .+..+..|++....+.+++...+ +.++.+.+++.+.+|+.+.+
T Consensus 188 g~~~~~~~~~~~~--~--~~~-------~~-~~~~-~~~~~~~Gi~~~ia~~~y~~~~~~~~~~~~~~~ls~~~pvia~~ 254 (290)
T TIGR00776 188 GMVIGGIIFNLGH--I--LAK-------PL-KKYA-ILLNILPGLMWGIGNFFYLFSAQPKVGVATSFSLSQLGVIISTL 254 (290)
T ss_pred HHHHHHHHHHHHH--h--ccc-------ch-HHHH-HHHHHHHHHHHHHHHHHHHHHcccccchhhHHHHHHHHHHHHHH
Confidence 233333322 0 000 11 1122 33344488886555566667778 99999999999999999999
Q ss_pred hhheeeCCcccchhhH----HHHHHHHHHhHHHHH
Q 022511 246 LGFVVLGGVQVRALNV----TGLLINTAGGVWYSY 276 (296)
Q Consensus 246 ~~~~~~~e~~~t~~~~----~G~~lil~g~~~~~~ 276 (296)
++++++|| +.++.|+ +|.++++.|+.+...
T Consensus 255 ~~v~~l~E-~~~~~~~~~~~iG~~lIi~~~~l~~~ 288 (290)
T TIGR00776 255 GGILILGE-KKTKREMIAISVGIILIIIAANILGI 288 (290)
T ss_pred HHHHHhcc-CCCcceeehhHHHHHHHHHHHHHHhc
Confidence 99999995 9999999 999999999987654
No 30
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=99.75 E-value=1.5e-17 Score=135.30 Aligned_cols=257 Identities=18% Similarity=0.189 Sum_probs=213.8
Q ss_pred CchHHHHHHHHHHHHHHHHHHhcCCccccccChhhhhHHHHHHHHHHHHHHHHhhhhcccchhHHHHHHhhHHHHHHHHH
Q 022511 16 HSMTLLTLQQLATALLIQAGRQMGYTKSKAIDLMTAKKLLPVSLFYNANVAFALASLKGVNIPMYIAIKRLTPLAVLVAG 95 (296)
Q Consensus 16 ~p~~l~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~s~~~~l~~~~pv~~~l~~ 95 (296)
+-..+++.|+++-..+.+.-...-..+++..|+ +.....+++..+.+.+.+-++.|+|...-.+.+.+..+-+++.+
T Consensus 74 ~GWylTlvQf~~Ysg~glie~~~~~~k~r~iP~---rtY~~la~~t~gtmGLsn~SlgYLNYPtQviFKccKliPVmigg 150 (367)
T KOG1582|consen 74 FGWYLTLVQFLVYSGFGLIELQLIQTKRRVIPW---RTYVILAFLTVGTMGLSNGSLGYLNYPTQVIFKCCKLIPVMIGG 150 (367)
T ss_pred cchHHHHHHHHHHHhhhheEEEeecccceecch---hHhhhhHhhhhhccccCcCccccccCcHHHHHHhhhhhhhhhee
Confidence 445689999988766655544332334455666 67888888999999999999999999999999999999999999
Q ss_pred HHhcCccCCccchhhhhhhhhhhHhhhcCCc----ccchhHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHhhh
Q 022511 96 FFSGKGKPTTQVTLSVLLTATGCVIAALGDF----SFDLSGYSMALTSVFFQTMYLVLVEKSGAEDGLSSVEIMFYNSFL 171 (296)
Q Consensus 96 ~~~~~e~~~~~~~~~i~l~~~Gv~l~~~~~~----~~~~~G~~~~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~ 171 (296)
.++-++|+++.++.+..+..+|.+..+..|. ++|..|..+.-.+.++.|+-...+++.++.++.++.++.+|....
T Consensus 151 ifIqGkRY~v~d~~aA~lm~lGli~FTLADs~~sPNF~~~Gv~mIsgALl~DA~iGNvQEk~m~~~~~ss~EmvfySy~i 230 (367)
T KOG1582|consen 151 IFIQGKRYGVHDYIAAMLMSLGLIWFTLADSQTSPNFNLIGVMMISGALLADAVIGNVQEKAMKMNPASSSEMVFYSYGI 230 (367)
T ss_pred eeeccccccHHHHHHHHHHHHHHHhhhhcccccCCCcceeeHHHHHHHHHHHHHhhHHHHHHHhhCCCCcceEEEeeecc
Confidence 9999999999999999999999999877553 467899999999999999999999999998888999999999999
Q ss_pred HHHHHHHHHHHhCCchhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHhhhhHHHHHHhhheee
Q 022511 172 SLPFLVFLIIVTGEFPGSLSLLFSKSNSFSFLVILILSLVMGIILNFTMFLCTIVNSALTTTIVGVLKGVGSTTLGFVVL 251 (296)
Q Consensus 172 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~sa~~~s~~~~l~pi~~~~~~~~~~ 251 (296)
+.+.++......||..+.+..-..+ +....-..++-...++....+....++..+|.++..+.+.++.+++++|+++|
T Consensus 231 G~vflf~~mvlTge~f~a~~fcaeh--p~~tyGy~~~~s~~gylG~~~VLalI~~fGA~~aatvTTaRKavTi~lSfllF 308 (367)
T KOG1582|consen 231 GFVFLFAPMVLTGELFSAWTFCAEH--PVRTYGYAFLFSLAGYLGIVFVLALIKLFGALIAATVTTARKAVTILLSFLLF 308 (367)
T ss_pred cHHHHHHHHHhcccchhhhHHHHhC--cHhHHHHHHHHHHHhHhhHHHHHHHHHHhchhHHHHHHHhHhHHHHHHHHHHH
Confidence 9999999899999987776543233 23223333444455555566666778999999999999999999999999999
Q ss_pred CCcccchhhHHHHHHHHHHhHHHHHHH
Q 022511 252 GGVQVRALNVTGLLINTAGGVWYSYAK 278 (296)
Q Consensus 252 ~e~~~t~~~~~G~~lil~g~~~~~~~~ 278 (296)
. +++|....-|..+++.|+++..+.|
T Consensus 309 s-KPfT~qy~~~gllv~lgI~Ln~ysk 334 (367)
T KOG1582|consen 309 S-KPFTEQYVWSGLLVVLGIYLNMYSK 334 (367)
T ss_pred c-CchHHHHhhhhHHHHHHHHhhcccC
Confidence 7 6999999999999999999877766
No 31
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=99.73 E-value=1.5e-16 Score=124.80 Aligned_cols=144 Identities=26% Similarity=0.463 Sum_probs=124.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccC-----CCCCHHHHHHHHhhhHHHHHHHHHHHhCCchhhhhh--hhc-cc-CchhH
Q 022511 132 GYSMALTSVFFQTMYLVLVEKSGAE-----DGLSSVEIMFYNSFLSLPFLVFLIIVTGEFPGSLSL--LFS-KS-NSFSF 202 (296)
Q Consensus 132 G~~~~l~s~~~~a~~~v~~k~~~~~-----~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~~~-~~-~~~~~ 202 (296)
|.++++.|.++.|+++++.|+..++ .+.++.++..|+++.+++.+.|.+...|+....... ... .. .+...
T Consensus 1 G~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 80 (153)
T PF03151_consen 1 GFILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNF 80 (153)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHH
Confidence 7889999999999999999998887 579999999999999999999999887653311111 011 11 14567
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHhhhhHHHHHHhhheeeCCcccchhhHHHHHHHHHHhHHHHH
Q 022511 203 LVILILSLVMGIILNFTMFLCTIVNSALTTTIVGVLKGVGSTTLGFVVLGGVQVRALNVTGLLINTAGGVWYSY 276 (296)
Q Consensus 203 ~~~~~~~g~~~~~~~~~~~~~~~~~sa~~~s~~~~l~pi~~~~~~~~~~~e~~~t~~~~~G~~lil~g~~~~~~ 276 (296)
+..++.+|+.++..+++.+.+++++||.+.++.+.+|.+...+.|+++||| ++|..++.|+++.+.|+.+|++
T Consensus 81 ~~~~~~~~~~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~-~~t~~~~~G~~l~~~G~~~Ysy 153 (153)
T PF03151_consen 81 IFLLILSGLLAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGE-PITPLQIIGIVLALVGVLLYSY 153 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCC-cCCHHHHHHHHHHHHHHheeeC
Confidence 888899999999999999999999999999999999999999999999996 9999999999999999999874
No 32
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=99.73 E-value=3.2e-16 Score=128.19 Aligned_cols=223 Identities=18% Similarity=0.150 Sum_probs=173.9
Q ss_pred hHHHHHHHHHHHHHHHHhhhhcccchhHHHHHHhhHHHHHHHHHHHhcCccCCccchhhhhhhhhhhHhhhcCC------
Q 022511 52 KKLLPVSLFYNANVAFALASLKGVNIPMYIAIKRLTPLAVLVAGFFSGKGKPTTQVTLSVLLTATGCVIAALGD------ 125 (296)
Q Consensus 52 ~~~l~~~~~~~~~~~~~~~al~~~~~s~~~~l~~~~pv~~~l~~~~~~~e~~~~~~~~~i~l~~~Gv~l~~~~~------ 125 (296)
...++.+++-.....+.+.++.+++++.+|+++....+|+.+++.-++|++++.++|+++....+|++++...|
T Consensus 87 ~lfl~Pal~Di~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviVg~~d~~~~~~ 166 (372)
T KOG3912|consen 87 VLFLPPALCDIAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIVGSLDVHLVTD 166 (372)
T ss_pred ceecChHHHHHhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchhhHHHHHHHHhhhheeeeeecccccC
Confidence 45677899988999999999999999999999999999999999999999999999999999999999865432
Q ss_pred ----cccchhHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHhhhHHHHHHHHHHHh-----CCchhh-------
Q 022511 126 ----FSFDLSGYSMALTSVFFQTMYLVLVEKSGAEDGLSSVEIMFYNSFLSLPFLVFLIIVT-----GEFPGS------- 189 (296)
Q Consensus 126 ----~~~~~~G~~~~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~~------- 189 (296)
.+.-..|+.+.+++-+.-|.+.++.+|..++++.+|.+...|..+++.+++....... ++..+-
T Consensus 167 p~~d~s~iitGdllIiiaqiivaiQ~v~Eek~l~~~nV~pl~avg~eGlfG~v~~slL~i~m~yi~~~~sfS~~~~g~~e 246 (372)
T KOG3912|consen 167 PYTDYSSIITGDLLIIIAQIIVAIQMVCEEKQLKKSNVAPLQAVGWEGLFGLVILSLLAIPMYYIPSGDSFSCNPRGVLE 246 (372)
T ss_pred CccccccchhhhHHHHHHHHHHHHHHHHHHhhhhhccCCHHHHhhhhhhHHHHHHHHHHHHHhheecCCcCcCCCCcchh
Confidence 1223689999999999999999999999999999999999999999866554443322 211110
Q ss_pred --hhhhhcccCchhHHHHHHHHHHHHHH--HHHHHHHHHhccChhHHHHHhhhhHHHHHHhhheeeCCcccchhhHHHHH
Q 022511 190 --LSLLFSKSNSFSFLVILILSLVMGII--LNFTMFLCTIVNSALTTTIVGVLKGVGSTTLGFVVLGGVQVRALNVTGLL 265 (296)
Q Consensus 190 --~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~sa~~~s~~~~l~pi~~~~~~~~~~~e~~~t~~~~~G~~ 265 (296)
.+.+......+. ..+...|..... .++......|..|+++-.++..++..+.-+++.....| .+...|+.|.+
T Consensus 247 D~~~~~~~~~e~p~--l~val~~~~vSiAffNfaGlsitk~~SattRmllD~lRt~~IWv~si~m~~E-~f~llqilGFl 323 (372)
T KOG3912|consen 247 DWGDAFAALQESPS--LAVALIGFTVSIAFFNFAGLSITKELSATTRMLLDSLRTYVIWVFSIAMGWE-YFHLLQILGFL 323 (372)
T ss_pred hHHHHHHHhcCCch--hHHHHhhhhhheeeeeehhhHHHHHhhHHHHHHHHhhhhhhhhHhHHHHHHH-HHHHHHHHHHH
Confidence 000000011111 122233332222 23555567799999999999999999999999988875 99999999999
Q ss_pred HHHHHhHHHHHH
Q 022511 266 INTAGGVWYSYA 277 (296)
Q Consensus 266 lil~g~~~~~~~ 277 (296)
+.+.|..+|+..
T Consensus 324 iLi~Gi~lY~~i 335 (372)
T KOG3912|consen 324 ILIMGIILYNQI 335 (372)
T ss_pred HHHHHHHHHHHH
Confidence 999999999853
No 33
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=99.37 E-value=2.9e-12 Score=106.70 Aligned_cols=194 Identities=13% Similarity=0.104 Sum_probs=131.6
Q ss_pred cchhHHHHHHhhHHHHHHHHHHHhcCccCCccchhhhhhhhhhhHhhhcC--------------------Cc-------c
Q 022511 75 VNIPMYIAIKRLTPLAVLVAGFFSGKGKPTTQVTLSVLLTATGCVIAALG--------------------DF-------S 127 (296)
Q Consensus 75 ~~~s~~~~l~~~~pv~~~l~~~~~~~e~~~~~~~~~i~l~~~Gv~l~~~~--------------------~~-------~ 127 (296)
++++.....++..|+++++.++...+||++..|+++.++...|+.....+ +. +
T Consensus 2 isvPa~~~~~s~~l~~v~l~~~~~~~~~~~~~~i~~~~l~~~g~l~~~ls~~q~~al~~l~~~~~~~~~~~~~~~~~~~g 81 (222)
T TIGR00803 2 LSVPIHIIFKQNNLVLIALGNLLAAGKQVTQLKILSTALMTLGSLVASLGDDQWFSLKLLKLGVAIVQMVQSSAKTLMFG 81 (222)
T ss_pred ccccchHHHHhcchHHHHHhcccccceeeehHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHhHeeeecCCCCccccccc
Confidence 46677888999999999999999999999999999999999998752211 10 1
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHhhhHHHHHHHHHHHhCCchhhhhhhhcccCchhHHHHHH
Q 022511 128 FDLSGYSMALTSVFFQTMYLVLVEKSGAEDGLSSVEIMFYNSFLSLPFLVFLIIVTGEFPGSLSLLFSKSNSFSFLVILI 207 (296)
Q Consensus 128 ~~~~G~~~~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (296)
..+.|....+.+.++.++..++.++..|+++.+.+.......+.+.+......... +.....+..+-+.++...|..+
T Consensus 82 ~~~~g~~~~l~a~~~~~~~~~y~e~~~k~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~- 159 (222)
T TIGR00803 82 NPVVGLSAVLSALLSSGFAGVYFEKILKDGDTMFWSRNLQLPLFGLFSTFSVLLWS-DGTLISNFGFFIGYPTAVWIVG- 159 (222)
T ss_pred cHHHHHHHHHHHHHHHhhhHHHHHHcccCCCCchHHHHHHHHHHHHHHHHHHHhhc-ccchhhccCcccCCchHHHHHH-
Confidence 23567777888888999999999998766533322222222222333222111111 1110001000112233333333
Q ss_pred HHHHHHHHHHHHHHHHHhccChhHHHHHhhhhHHHHHHhhheeeCCcccchhhHHHHHHHHHHhHHH
Q 022511 208 LSLVMGIILNFTMFLCTIVNSALTTTIVGVLKGVGSTTLGFVVLGGVQVRALNVTGLLINTAGGVWY 274 (296)
Q Consensus 208 ~~g~~~~~~~~~~~~~~~~~sa~~~s~~~~l~pi~~~~~~~~~~~e~~~t~~~~~G~~lil~g~~~~ 274 (296)
......+.+....+|+.++.+.++...++++++.++++++||| +++..++.|..+++.|+.+|
T Consensus 160 ---~~~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~-~ls~~~~~g~~lV~~~~~lY 222 (222)
T TIGR00803 160 ---LLNVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDA-KISSTFYLGAILVFLATFLY 222 (222)
T ss_pred ---HHHHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHeeeEeC
Confidence 2233344556678999999999999999999999999999985 99999999999999997765
No 34
>KOG2766 consensus Predicted membrane protein [Function unknown]
Probab=99.36 E-value=6.4e-14 Score=113.38 Aligned_cols=257 Identities=14% Similarity=0.075 Sum_probs=181.1
Q ss_pred eeeHHHHhc-CCCchHHHHHHHHHHHHHHHHHHhcCCccccccChhhhhHHHHHHHHHHHHHHHHhhhhcccchhHHHHH
Q 022511 5 FINKAVIMQ-YAHSMTLLTLQQLATALLIQAGRQMGYTKSKAIDLMTAKKLLPVSLFYNANVAFALASLKGVNIPMYIAI 83 (296)
Q Consensus 5 ~~nK~~l~~-~~~p~~l~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~s~~~~l 83 (296)
+.|.++-+. .+.|..=++.-...-+++--++...|+ +.+. ..+++.+..++.-.-.+++-..|.||++.....++
T Consensus 35 ~tss~la~k~iN~Pt~QtFl~Y~LLalVY~~~~~fR~---~~~~-~~~~hYilla~~DVEaNy~vV~AyQyTsmtSi~lL 110 (336)
T KOG2766|consen 35 FTSSELARKGINAPTSQTFLNYVLLALVYGPIMLFRR---KYIK-AKWRHYILLAFVDVEANYFVVKAYQYTSMTSIMLL 110 (336)
T ss_pred hhhHHHHhccCCCccHHHHHHHHHHHHHHhhHHHhhh---HHHH-HHHHHhhheeEEeecccEEEeeehhhcchHHHHHH
Confidence 445555554 355655444444443333333333332 2221 22255777777777778888889999999999999
Q ss_pred HhhHHHHHHHHHHHhcCccCCccchhhhhhhhhhhHhhhcCCc--------ccchhHHHHHHHHHHHHHHHHHHHHHhcc
Q 022511 84 KRLTPLAVLVAGFFSGKGKPTTQVTLSVLLTATGCVIAALGDF--------SFDLSGYSMALTSVFFQTMYLVLVEKSGA 155 (296)
Q Consensus 84 ~~~~pv~~~l~~~~~~~e~~~~~~~~~i~l~~~Gv~l~~~~~~--------~~~~~G~~~~l~s~~~~a~~~v~~k~~~~ 155 (296)
-.-..+.+.+++|+++|.|+++.++.+++.++.|++++..+|. +....|+++++.++-+||..++..+.+.|
T Consensus 111 Dcwaip~v~~lsw~fLktrYrlmki~gV~iCi~GvvmvV~sDV~agd~aggsnp~~GD~lvi~GATlYaVSNv~EEflvk 190 (336)
T KOG2766|consen 111 DCWAIPCVLVLSWFFLKTRYRLMKISGVVICIVGVVMVVFSDVHAGDRAGGSNPVKGDFLVIAGATLYAVSNVSEEFLVK 190 (336)
T ss_pred HHhhhHHHHHHHHHHHHHHHhhheeeeEEeEecceEEEEEeeeccccccCCCCCccCcEEEEecceeeeeccccHHHHHh
Confidence 9999999999999999999999999999999999999766442 22357999999999999999999999988
Q ss_pred CCCCCHHHHHHHHhhhHHHHHHHHHHHhCCchhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHH
Q 022511 156 EDGLSSVEIMFYNSFLSLPFLVFLIIVTGEFPGSLSLLFSKSNSFSFLVILILSLVMGIILNFTMFLCTIVNSALTTTIV 235 (296)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~sa~~~s~~ 235 (296)
+. |..+.+....++++++..+-.... ..+. ...+++...... +.....-++.+...-..+|..|++.+.+.
T Consensus 191 n~--d~~elm~~lgLfGaIIsaIQ~i~~--~~~~----~tl~w~~~i~~y-l~f~L~MFllYsl~pil~k~~~aT~~nls 261 (336)
T KOG2766|consen 191 NA--DRVELMGFLGLFGAIISAIQFIFE--RHHV----STLHWDSAIFLY-LRFALTMFLLYSLAPILIKTNSATMFNLS 261 (336)
T ss_pred cC--cHHHHHHHHHHHHHHHHHHHHhhh--ccce----eeEeehHHHHHH-HHHHHHHHHHHHhhHHheecCCceEEEhh
Confidence 74 899999999999998888763332 1111 122223221111 11222222333333355688888888777
Q ss_pred hhhhHHHHHHhhheeeCCcccchhhHHHHHHHHHHhHHHHHH
Q 022511 236 GVLKGVGSTTLGFVVLGGVQVRALNVTGLLINTAGGVWYSYA 277 (296)
Q Consensus 236 ~~l~pi~~~~~~~~~~~e~~~t~~~~~G~~lil~g~~~~~~~ 277 (296)
-......++++ ..||- +.+|...+..+.+..|.+.|+.+
T Consensus 262 lLTsDmwsl~i--~~FgY-hv~wLY~laF~~i~~GliiYs~r 300 (336)
T KOG2766|consen 262 LLTSDMWSLLI--RTFGY-HVDWLYFLAFATIATGLIIYSTR 300 (336)
T ss_pred HhHHHHHHHHH--HHHhc-chhhhhHHHHHHHHHhhEEeecc
Confidence 77778888877 55775 89999999999999999999654
No 35
>COG2510 Predicted membrane protein [Function unknown]
Probab=99.28 E-value=3e-11 Score=87.78 Aligned_cols=134 Identities=18% Similarity=0.190 Sum_probs=112.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHhhhHHHHHHHHHHHhCCchhhhhhhhcccCchhHHHHHHHHHHH
Q 022511 133 YSMALTSVFFQTMYLVLVEKSGAEDGLSSVEIMFYNSFLSLPFLVFLIIVTGEFPGSLSLLFSKSNSFSFLVILILSLVM 212 (296)
Q Consensus 133 ~~~~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 212 (296)
.++++++++++++..++.|--.++ .||...+...++....++.......|.... ...-+...|..+.++|+.
T Consensus 5 ~~~ALLsA~fa~L~~iF~KIGl~~--vdp~~At~IRtiVi~~~l~~v~~~~g~~~~------~~~~~~k~~lflilSGla 76 (140)
T COG2510 5 IIYALLSALFAGLTPIFAKIGLEG--VDPDFATTIRTIVILIFLLIVLLVTGNWQA------GGEIGPKSWLFLILSGLA 76 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccc--cCccHHHHHHHHHHHHHHHHHHHhcCceec------ccccCcceehhhhHHHHH
Confidence 588999999999999999887765 488888888887777777777777665322 111245668888899988
Q ss_pred HHHHHHHHHHHHhccChhHHHHHhhhhHHHHHHhhheeeCCcccchhhHHHHHHHHHHhHHHH
Q 022511 213 GIILNFTMFLCTIVNSALTTTIVGVLKGVGSTTLGFVVLGGVQVRALNVTGLLINTAGGVWYS 275 (296)
Q Consensus 213 ~~~~~~~~~~~~~~~sa~~~s~~~~l~pi~~~~~~~~~~~e~~~t~~~~~G~~lil~g~~~~~ 275 (296)
+-....++|++++...++.+..+.-+.|++++++|++++|| ++|..+++|.+++..|.++.+
T Consensus 77 ~glswl~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E-~ls~~~~iG~~LI~~Gailvs 138 (140)
T COG2510 77 GGLSWLLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGE-RLSLPTWIGIVLIVIGAILVS 138 (140)
T ss_pred HHHHHHHHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcC-CCCHHHHHHHHHHHhCeeeEe
Confidence 87777999999999999999999999999999999999995 999999999999999987754
No 36
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=99.28 E-value=2.1e-11 Score=91.73 Aligned_cols=117 Identities=14% Similarity=0.205 Sum_probs=96.7
Q ss_pred eeeeHHHHhcCCCchHHHHHHHHHHHHHHHHHHh-cCCccccccChhhhhHHHHHHHH-HHHHHHHHhhhhcccchhHHH
Q 022511 4 VFINKAVIMQYAHSMTLLTLQQLATALLIQAGRQ-MGYTKSKAIDLMTAKKLLPVSLF-YNANVAFALASLKGVNIPMYI 81 (296)
Q Consensus 4 ~~~nK~~l~~~~~p~~l~~~r~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~al~~~~~s~~~ 81 (296)
.+++|...++.+ |....++|...+.+ ...... .++.+.++.+++++...+..+++ ......+.++++++.+++.++
T Consensus 7 ~~~~k~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 84 (126)
T PF00892_consen 7 SVFSKKLLKKIS-PLSITFWRFLIAGI-LLILLLILGRKPFKNLSPRQWLWLLFLGLLGTALAYLLYFYALKYISASIVS 84 (126)
T ss_pred HHHHHHHhccCC-HHHHHHHHHHHHHH-HHHHHHhhccccccCCChhhhhhhhHhhccceehHHHHHHHHHHhcchhHHH
Confidence 456788888754 77899999999986 444333 22222356666676777777777 589999999999999999999
Q ss_pred HHHhhHHHHHHHHHHHhcCccCCccchhhhhhhhhhhHhhh
Q 022511 82 AIKRLTPLAVLVAGFFSGKGKPTTQVTLSVLLTATGCVIAA 122 (296)
Q Consensus 82 ~l~~~~pv~~~l~~~~~~~e~~~~~~~~~i~l~~~Gv~l~~ 122 (296)
.+.++.|+++.+++++++||++++.++.++++++.|++++.
T Consensus 85 ~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~~ 125 (126)
T PF00892_consen 85 ILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLIS 125 (126)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998764
No 37
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=99.24 E-value=5e-11 Score=88.33 Aligned_cols=106 Identities=16% Similarity=0.123 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHHHHHhcCCcc---ccccChhhhhHHHHHHHHHH-HHHHHHhhhhcccchhHHHHHHhhHHHHHHHHHHH
Q 022511 22 TLQQLATALLIQAGRQMGYTK---SKAIDLMTAKKLLPVSLFYN-ANVAFALASLKGVNIPMYIAIKRLTPLAVLVAGFF 97 (296)
Q Consensus 22 ~~r~~~~~~~l~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~-~~~~~~~~al~~~~~s~~~~l~~~~pv~~~l~~~~ 97 (296)
.+|...+.+.+......++.. .++.+++.+..+...|++.. .+..++++|+++.| +.+..+.++.|+++++++++
T Consensus 2 a~r~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~~~-~~v~~i~~~~pi~~~ll~~~ 80 (113)
T PF13536_consen 2 AFRYLFSVLFLLIILLIRGRLRDLFRALRRKPWLWLILAGLLGFGVAYLLFFYALSYAP-ALVAAIFSLSPIFTALLSWL 80 (113)
T ss_pred HHHHHHHHHHHHHHHHHHccHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHH
Confidence 468888887777765543211 12223344455566677665 88999999999999 58899999999999999999
Q ss_pred hcCccCCccchhhhhhhhhhhHhhhcCCccc
Q 022511 98 SGKGKPTTQVTLSVLLTATGCVIAALGDFSF 128 (296)
Q Consensus 98 ~~~e~~~~~~~~~i~l~~~Gv~l~~~~~~~~ 128 (296)
++|||++++++.+++++++|++++..+|.+.
T Consensus 81 ~~~er~~~~~~~a~~l~~~Gv~li~~~~~~~ 111 (113)
T PF13536_consen 81 FFKERLSPRRWLAILLILIGVILIAWSDLTG 111 (113)
T ss_pred HhcCCCCHHHHHHHHHHHHHHHHHhhhhccc
Confidence 9999999999999999999999998877653
No 38
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=99.17 E-value=2.7e-10 Score=85.66 Aligned_cols=124 Identities=23% Similarity=0.319 Sum_probs=97.4
Q ss_pred HHHHHHHHHHHHhccCCCCCHHHHHHHHhhhHHHHHHHHHHHhCCchhhhhhhhcccCchhHHHHHHHHHHHH-HHHHHH
Q 022511 141 FFQTMYLVLVEKSGAEDGLSSVEIMFYNSFLSLPFLVFLIIVTGEFPGSLSLLFSKSNSFSFLVILILSLVMG-IILNFT 219 (296)
Q Consensus 141 ~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~ 219 (296)
++||.+.++.|+..++ .|+....+++...+.+ +++.....+... ....+...+......++.+ ...+.+
T Consensus 1 ~~~a~~~~~~k~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (126)
T PF00892_consen 1 FSWAIYSVFSKKLLKK--ISPLSITFWRFLIAGI-LLILLLILGRKP-------FKNLSPRQWLWLLFLGLLGTALAYLL 70 (126)
T ss_pred ceeeeHHHHHHHHhcc--CCHHHHHHHHHHHHHH-HHHHHHhhcccc-------ccCCChhhhhhhhHhhccceehHHHH
Confidence 4688999999999877 5999999999999887 665555543321 0111233344555566664 555577
Q ss_pred HHHHHhccChhHHHHHhhhhHHHHHHhhheeeCCcccchhhHHHHHHHHHHhHHHH
Q 022511 220 MFLCTIVNSALTTTIVGVLKGVGSTTLGFVVLGGVQVRALNVTGLLINTAGGVWYS 275 (296)
Q Consensus 220 ~~~~~~~~sa~~~s~~~~l~pi~~~~~~~~~~~e~~~t~~~~~G~~lil~g~~~~~ 275 (296)
.+.+.++.++..++....++|+++.+++++++|| +++..+++|.++++.|+.+..
T Consensus 71 ~~~a~~~~~~~~~~~~~~~~pv~~~i~~~~~~~e-~~~~~~~~g~~l~~~g~~l~~ 125 (126)
T PF00892_consen 71 YFYALKYISASIVSILQYLSPVFAAILGWLFLGE-RPSWRQIIGIILIIIGVVLIS 125 (126)
T ss_pred HHHHHHhcchhHHHHHHHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHHHHHH
Confidence 8899999999999999999999999999999985 999999999999999988754
No 39
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=99.01 E-value=2e-07 Score=78.27 Aligned_cols=209 Identities=16% Similarity=0.096 Sum_probs=152.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHhhhhcccchhHHH-HHHhhHHHHHHHHHHHhcCccCCccchh----hhhhhhhhhHhhhc
Q 022511 49 MTAKKLLPVSLFYNANVAFALASLKGVNIPMYI-AIKRLTPLAVLVAGFFSGKGKPTTQVTL----SVLLTATGCVIAAL 123 (296)
Q Consensus 49 ~~~~~~l~~~~~~~~~~~~~~~al~~~~~s~~~-~l~~~~pv~~~l~~~~~~~e~~~~~~~~----~i~l~~~Gv~l~~~ 123 (296)
+.+..-+..|++.+..+..++.|.++..+|.+- +-...+.+.+.+.+.++++|..+..++. ++++.++|+.+.+.
T Consensus 43 ~~~~~~~lsG~~W~iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~gv~~fgEW~~~~~~~~G~~Al~liiiGv~lts~ 122 (269)
T PF06800_consen 43 TSFIVAFLSGAFWAIGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIGVLFFGEWTTTTQKIIGFLALVLIIIGVILTSY 122 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcceeeeccchhHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHhcc
Confidence 556677778888999999999999887766543 3446788889999999999999887764 88888899988776
Q ss_pred CCccc--------chhHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHhhhHHHHHHHHHHHhCCchhhhhhhhc
Q 022511 124 GDFSF--------DLSGYSMALTSVFFQTMYLVLVEKSGAEDGLSSVEIMFYNSFLSLPFLVFLIIVTGEFPGSLSLLFS 195 (296)
Q Consensus 124 ~~~~~--------~~~G~~~~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 195 (296)
.|.+. ...|+...+++.+.|..|.+..|-. +.|++...+=|.+--.+....+....++ ...
T Consensus 123 ~~~~~~~~~~~~~~~kgi~~Ll~stigy~~Y~~~~~~~----~~~~~~~~lPqaiGm~i~a~i~~~~~~~-~~~------ 191 (269)
T PF06800_consen 123 QDKKSDKSSSKSNMKKGILALLISTIGYWIYSVIPKAF----HVSGWSAFLPQAIGMLIGAFIFNLFSKK-PFF------ 191 (269)
T ss_pred ccccccccccccchhhHHHHHHHHHHHHHHHHHHHHhc----CCChhHhHHHHHHHHHHHHHHHhhcccc-ccc------
Confidence 43221 2468999999999999999997653 3588888876654333333333332211 100
Q ss_pred ccCchhHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHhhhhHHHHHHhhheeeCCcccch----hhHHHHHHHHHHh
Q 022511 196 KSNSFSFLVILILSLVMGIILNFTMFLCTIVNSALTTTIVGVLKGVGSTTLGFVVLGGVQVRA----LNVTGLLINTAGG 271 (296)
Q Consensus 196 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~sa~~~s~~~~l~pi~~~~~~~~~~~e~~~t~----~~~~G~~lil~g~ 271 (296)
+-. .+.=++.|+.-...+.+++...++.+..+.-.+..+..+.+.+.|.+++|| +=+. ..++|.++++.|.
T Consensus 192 ---~k~-~~~nil~G~~w~ignl~~~is~~~~G~a~af~lSQ~~vvIStlgGI~il~E-~Kt~ke~~~~~~G~~Liv~G~ 266 (269)
T PF06800_consen 192 ---EKK-SWKNILTGLIWGIGNLFYLISAQKNGVATAFTLSQLGVVISTLGGIFILKE-KKTKKEMIYTLIGLILIVIGA 266 (269)
T ss_pred ---ccc-hHHhhHHHHHHHHHHHHHHHhHHhccchhhhhHHhHHHHHHHhhhheEEEe-cCchhhHHHHHHHHHHHHHhh
Confidence 111 223357777777788888888889998888888999999999999999997 4453 4567888888876
Q ss_pred HH
Q 022511 272 VW 273 (296)
Q Consensus 272 ~~ 273 (296)
++
T Consensus 267 il 268 (269)
T PF06800_consen 267 IL 268 (269)
T ss_pred hc
Confidence 54
No 40
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=99.00 E-value=4.6e-10 Score=87.87 Aligned_cols=219 Identities=17% Similarity=0.162 Sum_probs=154.2
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhcccchhHHHHHHhhHHHHHHHHHHHhcCccCCccchhhhhhhhhhhHhhhcCC--ccc
Q 022511 51 AKKLLPVSLFYNANVAFALASLKGVNIPMYIAIKRLTPLAVLVAGFFSGKGKPTTQVTLSVLLTATGCVIAALGD--FSF 128 (296)
Q Consensus 51 ~~~~l~~~~~~~~~~~~~~~al~~~~~s~~~~l~~~~pv~~~l~~~~~~~e~~~~~~~~~i~l~~~Gv~l~~~~~--~~~ 128 (296)
+++..|.+.+..+.++.+..|++.++++.++.+....-.|+.+++++++|+|+..-++++.++.+.|++++...| ...
T Consensus 53 ~~~taPF~i~Wt~aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmiay~DN~~a~ 132 (290)
T KOG4314|consen 53 FIRTAPFSIFWTGANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIAYADNEHAD 132 (290)
T ss_pred eeeecceEEEEecCCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEEeccchhhh
Confidence 345667888888999999999999999999999999999999999999999999999999999999999988544 445
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHhhhHHHHHH----HHH-H-HhC-CchhhhhhhhcccCchh
Q 022511 129 DLSGYSMALTSVFFQTMYLVLVEKSGAEDGLSSVEIMFYNSFLSLPFLV----FLI-I-VTG-EFPGSLSLLFSKSNSFS 201 (296)
Q Consensus 129 ~~~G~~~~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~l~----~~~-~-~~~-~~~~~~~~~~~~~~~~~ 201 (296)
++.|+.+++.|++..|+|.+..|+...+.+ --+...+.+.+++.=+. |.. + ..+ |.++.. . ..
T Consensus 133 e~iGi~~AV~SA~~aAlYKV~FK~~iGnAn--~Gdaa~FmS~LGF~NL~~~~~~~lIL~~T~VE~~qsF----A----~~ 202 (290)
T KOG4314|consen 133 EIIGIACAVGSAFMAALYKVLFKMFIGNAN--FGDAAHFMSCLGFFNLCFISFPALILAFTGVEHLQSF----A----AA 202 (290)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhccCc--chhHHHHHHHHHHHHHHHHhhhHHHHHHhchHHHHHH----h----hC
Confidence 789999999999999999999999876643 22223333333332211 111 1 111 112111 1 11
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHhhhhHHHHHHhhheeeCCcccchhhHHHHHHHHHHhHHHHHHHHh
Q 022511 202 FLVILILSLVMGIILNFTMFLCTIVNSALTTTIVGVLKGVGSTTLGFVVLGGVQVRALNVTGLLINTAGGVWYSYAKYQ 280 (296)
Q Consensus 202 ~~~~~~~~g~~~~~~~~~~~~~~~~~sa~~~s~~~~l~pi~~~~~~~~~~~e~~~t~~~~~G~~lil~g~~~~~~~~~~ 280 (296)
-|..+......+...++.....+..+.|...|+=...........+.++ +|-..+.....|..++..|..+.-..+++
T Consensus 203 PWG~l~G~A~L~lAFN~~iN~GiaL~~PilISiG~l~~iP~NaaiDiL~-q~l~~ntl~La~T~iI~i~FiLiiiP~d~ 280 (290)
T KOG4314|consen 203 PWGCLCGAAGLSLAFNFLINFGIALLNPILISIGMLCGIPGNAAIDILF-QELEFNTLFLAATCIICIGFILIIIPEDK 280 (290)
T ss_pred CchhhhhHHHHHHHHhhheeehhhhhchhhheehheecCcchhHHHHHH-HHHHHHHHHHHHHHHHHHhHHheecccch
Confidence 1333444444444445555555666777766664445555556677654 45678899999999999998887665443
No 41
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=99.00 E-value=2.3e-08 Score=86.90 Aligned_cols=142 Identities=14% Similarity=0.123 Sum_probs=108.0
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHhhhHHHHHHHHHHHhCCchhhhhhhhcccCchhHHHH
Q 022511 126 FSFDLSGYSMALTSVFFQTMYLVLVEKSGAEDGLSSVEIMFYNSFLSLPFLVFLIIVTGEFPGSLSLLFSKSNSFSFLVI 205 (296)
Q Consensus 126 ~~~~~~G~~~~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (296)
.+....|..++++++++|+...++.|.. . +.++.+..+++...+.+.+.+.....++..... ....+...+..
T Consensus 3 ~~~~~~g~~~~l~a~~~wg~~~~~~k~~-~--~~~~~~~~~~R~~~a~~~l~~~~~~~~~~~~~~----~~~~~~~~~~~ 75 (296)
T PRK15430 3 AKQTRQGVLLALAAYFIWGIAPAYFKLI-Y--YVPADEILTHRVIWSFFFMVVLMSICRQWSYLK----TLIQTPQKIFM 75 (296)
T ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHHh-c--CCCHHHHHHHHHHHHHHHHHHHHHHHccHHHHH----HHHcCHHHHHH
Confidence 3445689999999999999999999765 3 369999999999999887777665443211110 00112232333
Q ss_pred HHHHHHHHHHHHHHHHHHHhccChhHHHHHhhhhHHHHHHhhheeeCCcccchhhHHHHHHHHHHhHHHH
Q 022511 206 LILSLVMGIILNFTMFLCTIVNSALTTTIVGVLKGVGSTTLGFVVLGGVQVRALNVTGLLINTAGGVWYS 275 (296)
Q Consensus 206 ~~~~g~~~~~~~~~~~~~~~~~sa~~~s~~~~l~pi~~~~~~~~~~~e~~~t~~~~~G~~lil~g~~~~~ 275 (296)
....+......+.+.+++.++.++..+++..+..|+++.++++++++| +++..+++|.++.+.|+.+..
T Consensus 76 ~~~~~~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E-~~~~~~~~g~~l~~~Gv~li~ 144 (296)
T PRK15430 76 LAVSAVLIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGE-RFRRMQWLAVILAICGVLVQL 144 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHHHH
Confidence 333344444455778899999999999999999999999999999985 999999999999999998764
No 42
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=98.91 E-value=4e-08 Score=84.82 Aligned_cols=133 Identities=11% Similarity=0.108 Sum_probs=99.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHhhhHHHHHHHHHHHhCCchhhhhhhhcccCchhHHHHHHHHHHH
Q 022511 133 YSMALTSVFFQTMYLVLVEKSGAEDGLSSVEIMFYNSFLSLPFLVFLIIVTGEFPGSLSLLFSKSNSFSFLVILILSLVM 212 (296)
Q Consensus 133 ~~~~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 212 (296)
+.+.+.+++++|..++..||..+++ ++ ..++....+.+.+.|.......... ....+...+..+...+..
T Consensus 3 ~~~~~~aa~~~a~~~~~~k~~~~~~--~~--~~~~~~~~~~~~l~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~ 72 (281)
T TIGR03340 3 LTLVVFSALMHAGWNLMAKSHADKE--PD--FLWWALLAHSVLLTPYGLWYLAQVG------WSRLPATFWLLLAISAVA 72 (281)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCch--hH--HHHHHHHHHHHHHHHHHHHhcccCC------CCCcchhhHHHHHHHHHH
Confidence 5678999999999999999876652 33 3466666667777776554211000 001122334455666666
Q ss_pred HHHHHHHHHHHHhccChhHHHHHhhhhHHHHHHhhheeeCCcccchhhHHHHHHHHHHhHHHHH
Q 022511 213 GIILNFTMFLCTIVNSALTTTIVGVLKGVGSTTLGFVVLGGVQVRALNVTGLLINTAGGVWYSY 276 (296)
Q Consensus 213 ~~~~~~~~~~~~~~~sa~~~s~~~~l~pi~~~~~~~~~~~e~~~t~~~~~G~~lil~g~~~~~~ 276 (296)
......+.+.+.++.++...+.+.+..|+++.+++++++|| +++..+++|.++++.|+.+...
T Consensus 73 ~~~~~~~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e-~~~~~~~~g~~~~~~Gv~ll~~ 135 (281)
T TIGR03340 73 NMVYFLGLAQAYHHADVGLVYPLARSSPLLVAIWATLTLGE-TLSPLAWLGILIITLGLLVLGL 135 (281)
T ss_pred HHHHHHHHHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHhc
Confidence 66667788889999999999999999999999999999985 9999999999999999987653
No 43
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=98.90 E-value=8.4e-08 Score=81.62 Aligned_cols=140 Identities=14% Similarity=0.196 Sum_probs=107.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHhhhHHHHHHHHHHHhCCchhhhhhhhcccCchhHHHHHHHHH
Q 022511 131 SGYSMALTSVFFQTMYLVLVEKSGAEDGLSSVEIMFYNSFLSLPFLVFLIIVTGEFPGSLSLLFSKSNSFSFLVILILSL 210 (296)
Q Consensus 131 ~G~~~~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 210 (296)
.|..++++++++|+...++.|.. .+ .++.++.++..+++++.+.+.....++..+.... .........+..+...|
T Consensus 2 ~g~~~~i~a~~~wg~~~~~~k~~-~~--~~~~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g 77 (256)
T TIGR00688 2 KGIIVSLLASFLFGYMYYYSKLL-KP--LPATDILGHRMIWSFPFMLLSVTLFRQWAALIER-LKRIQKRPLILSLLLCG 77 (256)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHh-cc--CCHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHH-HhCcccchHHHHHHHHH
Confidence 47899999999999999999974 33 6999999999999988877765444321110000 01111112344556667
Q ss_pred HHHHHHHHHHHHHHhccChhHHHHHhhhhHHHHHHhhheeeCCcccchhhHHHHHHHHHHhHHHH
Q 022511 211 VMGIILNFTMFLCTIVNSALTTTIVGVLKGVGSTTLGFVVLGGVQVRALNVTGLLINTAGGVWYS 275 (296)
Q Consensus 211 ~~~~~~~~~~~~~~~~~sa~~~s~~~~l~pi~~~~~~~~~~~e~~~t~~~~~G~~lil~g~~~~~ 275 (296)
+.......+.+.+.+++++.+++++.+..|+++.++++++++| +++..+++|..+.++|+.+..
T Consensus 78 ~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~E-k~~~~~~l~~~~~~~Gv~li~ 141 (256)
T TIGR00688 78 LLIGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKE-RISRFQFIAVIIATLGVISNI 141 (256)
T ss_pred HHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHH
Confidence 6666666888899999999999999999999999999999995 999999999999999988654
No 44
>COG2510 Predicted membrane protein [Function unknown]
Probab=98.86 E-value=4.7e-09 Score=76.45 Aligned_cols=116 Identities=9% Similarity=0.065 Sum_probs=94.7
Q ss_pred eeHHHHhcCCCchHHHHHHHHHHHHHHHHHHhc-CCcc-ccccChhhhhHHHHHHHHHHHHHHHHhhhhcccchhHHHHH
Q 022511 6 INKAVIMQYAHSMTLLTLQQLATALLIQAGRQM-GYTK-SKAIDLMTAKKLLPVSLFYNANVAFALASLKGVNIPMYIAI 83 (296)
Q Consensus 6 ~nK~~l~~~~~p~~l~~~r~~~~~~~l~~~~~~-~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~s~~~~l 83 (296)
..|.-+++.+ |.+=++.|..+....+...... ++.+ ....+.+.+..+...|+..+.+..+++.|++.-++|...-+
T Consensus 21 F~KIGl~~vd-p~~At~IRtiVi~~~l~~v~~~~g~~~~~~~~~~k~~lflilSGla~glswl~Yf~ALk~G~as~VvPl 99 (140)
T COG2510 21 FAKIGLEGVD-PDFATTIRTIVILIFLLIVLLVTGNWQAGGEIGPKSWLFLILSGLAGGLSWLLYFRALKKGKASRVVPL 99 (140)
T ss_pred HHHHhccccC-ccHHHHHHHHHHHHHHHHHHHhcCceecccccCcceehhhhHHHHHHHHHHHHHHHHHhcCCcceEEEc
Confidence 4566665554 7778889998887777666543 3322 22456666677777788888999999999999999999999
Q ss_pred HhhHHHHHHHHHHHhcCccCCccchhhhhhhhhhhHhhh
Q 022511 84 KRLTPLAVLVAGFFSGKGKPTTQVTLSVLLTATGCVIAA 122 (296)
Q Consensus 84 ~~~~pv~~~l~~~~~~~e~~~~~~~~~i~l~~~Gv~l~~ 122 (296)
-.++|+++++++++++|||++..+|.++++..+|.++++
T Consensus 100 dk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs 138 (140)
T COG2510 100 DKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVS 138 (140)
T ss_pred ccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEe
Confidence 999999999999999999999999999999999998754
No 45
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=98.69 E-value=6.1e-07 Score=79.72 Aligned_cols=138 Identities=13% Similarity=0.116 Sum_probs=108.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHhhhHHHHHHHHHHHhCCchhhhhhhhcccCchhHHHHHHHHH
Q 022511 131 SGYSMALTSVFFQTMYLVLVEKSGAEDGLSSVEIMFYNSFLSLPFLVFLIIVTGEFPGSLSLLFSKSNSFSFLVILILSL 210 (296)
Q Consensus 131 ~G~~~~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 210 (296)
.-+..++..-++|+.+.++.|...+. +.++....++...++.++++|+....+.... ....+...+..+...|
T Consensus 13 ~~~~~~~~~q~~~~~~~~~~k~a~~~-G~~~~~~~~~R~~iA~l~Ll~~~~~~~~~~~------~~~~~~~~~~~l~l~g 85 (358)
T PLN00411 13 VFLTAMLATETSVVGISTLFKVATSK-GLNIYPFLGYSYLLASLLLLPSLFFTNRSRS------LPPLSVSILSKIGLLG 85 (358)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHC-CCCccHHHHHHHHHHHHHHHHHHHHHHHhcc------cCcchHHHHHHHHHHH
Confidence 34677888899999999999998854 7999999999999999999888765321000 0001233455566677
Q ss_pred HHHHHHHHHHHHHHhccChhHHHHHhhhhHHHHHHhhhee------eCCcccchhhHHHHHHHHHHhHHHHH
Q 022511 211 VMGIILNFTMFLCTIVNSALTTTIVGVLKGVGSTTLGFVV------LGGVQVRALNVTGLLINTAGGVWYSY 276 (296)
Q Consensus 211 ~~~~~~~~~~~~~~~~~sa~~~s~~~~l~pi~~~~~~~~~------~~e~~~t~~~~~G~~lil~g~~~~~~ 276 (296)
+++...+.+.+...++++|..++++.++.|+++.++++++ ++| +++..+++|.++.+.|+.+...
T Consensus 86 ~~g~~~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~e-r~~~~~~~G~~l~~~Gv~ll~~ 156 (358)
T PLN00411 86 FLGSMYVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKE-RSSVAKVMGTILSLIGALVVIF 156 (358)
T ss_pred HHHHHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcc-cccHHHHHHHHHHHHHHHHHHH
Confidence 7775455567788999999999999999999999999998 675 9999999999999999887654
No 46
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=98.63 E-value=5.7e-07 Score=77.84 Aligned_cols=205 Identities=15% Similarity=0.133 Sum_probs=120.2
Q ss_pred HHHHHHHHHHhhhhcccchhHHHHHHhhHHHHHHHHHHHhcCccCCccchhhhhhhhhhhHhhhc--CCc--ccch----
Q 022511 59 LFYNANVAFALASLKGVNIPMYIAIKRLTPLAVLVAGFFSGKGKPTTQVTLSVLLTATGCVIAAL--GDF--SFDL---- 130 (296)
Q Consensus 59 ~~~~~~~~~~~~al~~~~~s~~~~l~~~~pv~~~l~~~~~~~e~~~~~~~~~i~l~~~Gv~l~~~--~~~--~~~~---- 130 (296)
..+..+......|+.+.|.+..+=+.+...++.++++..++|||++++++.++.++++|..++.. ++. ..+.
T Consensus 58 ~~~~~g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv~~~~~~~~~~t~~~l~ 137 (300)
T PF05653_consen 58 LLMVLGEILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIVIFAPKEEPIHTLDELI 137 (300)
T ss_pred HHHhcchHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeEEeCCCCCCcCCHHHHH
Confidence 34678888899999999999999999999999999999999999999999999999999987542 111 1110
Q ss_pred -----hHHH-H-HHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHhh---hHHHHH--------HHHHHHhCCchhhhhh
Q 022511 131 -----SGYS-M-ALTSVFFQTMYLVLVEKSGAEDGLSSVEIMFYNSF---LSLPFL--------VFLIIVTGEFPGSLSL 192 (296)
Q Consensus 131 -----~G~~-~-~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~---~~~~~l--------~~~~~~~~~~~~~~~~ 192 (296)
.+++ + .+...+...+.....+|..++ +. ..|..+ .+.... ..-....|+
T Consensus 138 ~~~~~~~fl~y~~~~~~~~~~L~~~~~~r~g~~---~i---~vyi~i~sl~Gs~tvl~~K~i~~~i~~~~~g~------- 204 (300)
T PF05653_consen 138 ALLSQPGFLVYFILVLVLILILIFFIKPRYGRR---NI---LVYISICSLIGSFTVLSAKAISILIKLTFSGD------- 204 (300)
T ss_pred HHhcCcceehhHHHHHHHHHHHHHhhcchhccc---ce---EEEEEEeccccchhhhHHHHHHHHHHHHhcCc-------
Confidence 1111 1 111111111222222222111 11 111111 111111 100011111
Q ss_pred hhcccCchhHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHhhh-hHHHHHHhhheeeCCc-ccch----hhHHHHHH
Q 022511 193 LFSKSNSFSFLVILILSLVMGIILNFTMFLCTIVNSALTTTIVGVL-KGVGSTTLGFVVLGGV-QVRA----LNVTGLLI 266 (296)
Q Consensus 193 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~sa~~~s~~~~l-~pi~~~~~~~~~~~e~-~~t~----~~~~G~~l 266 (296)
+....+..|.+++...+.....-+..++++++.+++....+.+. -...+++-|.++|+|. +.+. ....|..+
T Consensus 205 --~~f~~~~~y~l~~~~v~~~~~Q~~~LN~aL~~fd~~~V~P~~~v~~t~~~i~~g~i~f~e~~~~~~~~~~~~~~G~~~ 282 (300)
T PF05653_consen 205 --NQFTYPLTYLLLLVLVVTAVLQLYYLNKALKRFDTSLVVPVYYVFFTLSSIIGGAIFFQEFSRMTAWQIIGFLCGFLI 282 (300)
T ss_pred --hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccceEEEeehhHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHH
Confidence 11113344555555544444555778899999988665554444 5556677777888752 3444 44567777
Q ss_pred HHHHhHHHHHHH
Q 022511 267 NTAGGVWYSYAK 278 (296)
Q Consensus 267 il~g~~~~~~~~ 278 (296)
++.|+.+.+..|
T Consensus 283 ii~GV~lL~~~~ 294 (300)
T PF05653_consen 283 IIIGVFLLSSSK 294 (300)
T ss_pred HHHhhheeeccC
Confidence 888888776544
No 47
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=98.62 E-value=4.4e-07 Score=77.26 Aligned_cols=113 Identities=13% Similarity=0.023 Sum_probs=87.1
Q ss_pred eeeHHHHhcCCCc-hHHHHHHHHHHHHHHHHHHhcCCccccccChhhhhHHHHHHHH-HHHHHHHHhhhhcccchhHHHH
Q 022511 5 FINKAVIMQYAHS-MTLLTLQQLATALLIQAGRQMGYTKSKAIDLMTAKKLLPVSLF-YNANVAFALASLKGVNIPMYIA 82 (296)
Q Consensus 5 ~~nK~~l~~~~~p-~~l~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~al~~~~~s~~~~ 82 (296)
+++|...++.+.+ .....+|+.++.+++.+.......+ ...+.+++...+..+++ ......++++++++.+++.++.
T Consensus 145 ~~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~s~ 223 (260)
T TIGR00950 145 VLYKRLVKKEGPELLQFTGWVLLLGALLLLPFAWFLGPN-PQALSLQWGALLYLGLIGTALAYFLWNKGLTLVDPSAASI 223 (260)
T ss_pred HHHhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHhcCCC-CCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 4567666665433 3455578888888777765543222 23345555556666665 4678888999999999999999
Q ss_pred HHhhHHHHHHHHHHHhcCccCCccchhhhhhhhhhh
Q 022511 83 IKRLTPLAVLVAGFFSGKGKPTTQVTLSVLLTATGC 118 (296)
Q Consensus 83 l~~~~pv~~~l~~~~~~~e~~~~~~~~~i~l~~~Gv 118 (296)
+.++.|++.++++++++||+++..++.++.+.+.|+
T Consensus 224 ~~~~~pv~~~ll~~~~~~E~~~~~~~~G~~li~~g~ 259 (260)
T TIGR00950 224 LALAEPLVALLLGLLILGETLSLPQLIGGALIIAAV 259 (260)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999986
No 48
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=98.58 E-value=4.1e-07 Score=66.79 Aligned_cols=65 Identities=15% Similarity=0.058 Sum_probs=60.5
Q ss_pred HHHHHHHHHHhhhhcccchhHHHHHHhhHHHHHHHHHHHhcCccCCccchhhhhhhhhhhHhhhc
Q 022511 59 LFYNANVAFALASLKGVNIPMYIAIKRLTPLAVLVAGFFSGKGKPTTQVTLSVLLTATGCVIAAL 123 (296)
Q Consensus 59 ~~~~~~~~~~~~al~~~~~s~~~~l~~~~pv~~~l~~~~~~~e~~~~~~~~~i~l~~~Gv~l~~~ 123 (296)
..+....++...++++.|.+.+..+.++.++++++.+++++|||++.+++.++.+.++|++++..
T Consensus 45 ~~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~~ 109 (111)
T PRK15051 45 ACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILGS 109 (111)
T ss_pred HHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 44778899999999999999999999999999999999999999999999999999999988653
No 49
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=98.36 E-value=1.2e-05 Score=60.50 Aligned_cols=119 Identities=12% Similarity=-0.034 Sum_probs=82.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHhhhHHHHHHHHHHHhCCchhhhhhhhcccCchhHHHHHHHHH
Q 022511 131 SGYSMALTSVFFQTMYLVLVEKSGAEDGLSSVEIMFYNSFLSLPFLVFLIIVTGEFPGSLSLLFSKSNSFSFLVILILSL 210 (296)
Q Consensus 131 ~G~~~~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 210 (296)
.|+++.+.+.++.+..+++.|+-.++.+..+.... . .... . ... + + ...+..|
T Consensus 2 ~~~~~i~~sv~l~~~gQl~~K~g~~~~g~~~~~~~---~----~~~~-~-~~~-~--------------p---~~~i~lg 54 (129)
T PRK02971 2 MGYLWGLASVLLASVAQLSLKWGMSRLPLLSHAWD---F----IAAL-L-AFG-L--------------A---LRAVLLG 54 (129)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhhCCCccchhH---H----HHHH-H-HHh-c--------------c---HHHHHHH
Confidence 47889999999999999999988766432111110 0 0000 0 000 1 0 0123455
Q ss_pred HHHHHHH-HHHHHHHhccChhHHHHHhhhhHHHHHHhhhe--eeCCcccchhhHHHHHHHHHHhHHHHHH
Q 022511 211 VMGIILN-FTMFLCTIVNSALTTTIVGVLKGVGSTTLGFV--VLGGVQVRALNVTGLLINTAGGVWYSYA 277 (296)
Q Consensus 211 ~~~~~~~-~~~~~~~~~~sa~~~s~~~~l~pi~~~~~~~~--~~~e~~~t~~~~~G~~lil~g~~~~~~~ 277 (296)
+..+... +++..++++.+.+.+.......++...+.++. +||| ++|+.+++|++++++|+++.++.
T Consensus 55 l~~~~la~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E-~ls~~~~iGi~lIi~GV~lv~~~ 123 (129)
T PRK02971 55 LAGYALSMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNE-TFSLKKTLGVACIMLGVWLINLP 123 (129)
T ss_pred HHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHHHHhccC
Confidence 5555555 55668899999999988888888777777774 7985 99999999999999999997653
No 50
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=98.29 E-value=3.5e-05 Score=68.57 Aligned_cols=138 Identities=14% Similarity=0.071 Sum_probs=102.8
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhccCCCCC-HHHHHHHHhhhHHHHHHHHHHHh-CCchhhhhhhhcccCchhHHHHH
Q 022511 129 DLSGYSMALTSVFFQTMYLVLVEKSGAEDGLS-SVEIMFYNSFLSLPFLVFLIIVT-GEFPGSLSLLFSKSNSFSFLVIL 206 (296)
Q Consensus 129 ~~~G~~~~l~s~~~~a~~~v~~k~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 206 (296)
++.-..+.+.--.+...+++++|...+.. + |+.+...+.+.+.+...+..... .+.++. ......+..+
T Consensus 47 ~~~~~~~~~~wy~~s~~~~~~nK~vl~~~--~~P~~l~~~~~~~~~l~~~~~~~~~~~~~~~~-------~~~~~~~~~l 117 (350)
T PTZ00343 47 KWKLALLFLTWYALNVLYVVDNKLALNML--PLPWTISSLQLFVGWLFALLYWATGFRKIPRI-------KSLKLFLKNF 117 (350)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhC--ChhHHHHHHHHHHHHHHHHHHHHhCCCCCCCC-------CCHHHHHHHH
Confidence 34444556666667777888999988774 6 99999999998877655443321 111111 0012245566
Q ss_pred HHHHHHHHHHHHHHHHHHhccChhHHHHHhhhhHHHHHHhhheeeCCcccchhhHHHHHHHHHHhHHHHH
Q 022511 207 ILSLVMGIILNFTMFLCTIVNSALTTTIVGVLKGVGSTTLGFVVLGGVQVRALNVTGLLINTAGGVWYSY 276 (296)
Q Consensus 207 ~~~g~~~~~~~~~~~~~~~~~sa~~~s~~~~l~pi~~~~~~~~~~~e~~~t~~~~~G~~lil~g~~~~~~ 276 (296)
+..|+++.......+..++.++++.++++....|++++++++++++| +++..++.|.+++++|+.+...
T Consensus 118 lp~gl~~~~~~~~~~~sl~~~svs~~~iika~~Pvft~lls~~~l~e-k~s~~~~l~l~l~v~Gv~l~~~ 186 (350)
T PTZ00343 118 LPQGLCHLFVHFGAVISMGLGAVSFTHVVKAAEPVFTALLSILFLKQ-FLNLYAYLSLIPIVGGVALASV 186 (350)
T ss_pred HHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHhCC-CccHHHHHHHHHHHHHHHheec
Confidence 77777777666666688899999999999999999999999999995 9999999999999999887653
No 51
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=98.28 E-value=5.8e-05 Score=65.52 Aligned_cols=130 Identities=10% Similarity=0.054 Sum_probs=97.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHhhhHHHHHHHHHHHhCCchhhhhhhhcccCchhHHHHHHHHHHH
Q 022511 133 YSMALTSVFFQTMYLVLVEKSGAEDGLSSVEIMFYNSFLSLPFLVFLIIVTGEFPGSLSLLFSKSNSFSFLVILILSLVM 212 (296)
Q Consensus 133 ~~~~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 212 (296)
.+..+.-.+.|+...+..|...++ .+|.+..++....+++.+.+.....+.... +...+......|.+
T Consensus 10 ~~~~~~~~~iWg~~~~~~K~~~~~--~~p~~~~~~R~~~a~l~ll~~~~~~~~~~~----------~~~~~~~~~~~g~~ 77 (292)
T PRK11272 10 FGALFALYIIWGSTYLVIRIGVES--WPPLMMAGVRFLIAGILLLAFLLLRGHPLP----------TLRQWLNAALIGLL 77 (292)
T ss_pred HHHHHHHHHHHhhHHHHHHHHhcc--CCHHHHHHHHHHHHHHHHHHHHHHhCCCCC----------cHHHHHHHHHHHHH
Confidence 345667788999999999987654 699999999999998888877654322110 12234444455555
Q ss_pred HHHH-HHHHHHHH-hccChhHHHHHhhhhHHHHHHhhheeeCCcccchhhHHHHHHHHHHhHHHHH
Q 022511 213 GIIL-NFTMFLCT-IVNSALTTTIVGVLKGVGSTTLGFVVLGGVQVRALNVTGLLINTAGGVWYSY 276 (296)
Q Consensus 213 ~~~~-~~~~~~~~-~~~sa~~~s~~~~l~pi~~~~~~~~~~~e~~~t~~~~~G~~lil~g~~~~~~ 276 (296)
.... +.+.+... ++.++...++..++.|+++.+++++ +|| +++..+++|..+.++|+.+...
T Consensus 78 ~~~~~~~~~~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e-~~~~~~~~~~~la~~Gv~ll~~ 141 (292)
T PRK11272 78 LLAVGNGMVTVAEHQNVPSGIAAVVVATVPLFTLCFSRL-FGI-RTRKLEWLGIAIGLAGIVLLNS 141 (292)
T ss_pred HHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHH-hcc-cCchhHHHHHHHHHHhHHHHhc
Confidence 4333 34455555 8889999999999999999999986 785 9999999999999999887653
No 52
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=98.28 E-value=3.6e-05 Score=67.16 Aligned_cols=130 Identities=14% Similarity=0.008 Sum_probs=96.1
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHhhhHHHHHHHHHHHhCCchhhhhhhhcccCchhHHHHHHHHHHHHHH
Q 022511 136 ALTSVFFQTMYLVLVEKSGAEDGLSSVEIMFYNSFLSLPFLVFLIIVTGEFPGSLSLLFSKSNSFSFLVILILSLVMGII 215 (296)
Q Consensus 136 ~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 215 (296)
.+.--++...+++++|...++. ..|..+.+.+...+.+...+... .+. .+ ....+...+..++..|++...
T Consensus 7 ~~~w~~~~~~~~~~NK~~l~~~-~~P~~~~~~~~~~~~~~~~~~~~-~~~-~~------~~~~~~~~~~~~~~~g~~~~~ 77 (302)
T TIGR00817 7 FGLWYFLNVYFNIYNKKLLNVF-PYPYFKTLISLAVGSLYCLLSWS-SGL-PK------RLKISSALLKLLLPVAIVHTI 77 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHhhC-ChhHHHHHHHHHHHHHHHHHHHH-hCC-CC------CCCCCHHHHHHHHHHHHHHHH
Confidence 3445556666778888888763 47888888888777666554411 111 11 011123456666677777666
Q ss_pred HHHHHHHHHhccChhHHHHHhhhhHHHHHHhhheeeCCcccchhhHHHHHHHHHHhHHHH
Q 022511 216 LNFTMFLCTIVNSALTTTIVGVLKGVGSTTLGFVVLGGVQVRALNVTGLLINTAGGVWYS 275 (296)
Q Consensus 216 ~~~~~~~~~~~~sa~~~s~~~~l~pi~~~~~~~~~~~e~~~t~~~~~G~~lil~g~~~~~ 275 (296)
...+.+...+++++...+++..+.|+++.++++++++| +++..++.|.+++++|+.+..
T Consensus 78 ~~~~~~~~l~~~s~s~~~li~~~~Pv~~~ll~~~~~~e-~~~~~~~~~l~l~~~Gv~l~~ 136 (302)
T TIGR00817 78 GHVTSNVSLSKVAVSFTHTIKAMEPFFSVVLSAFFLGQ-EFPSTLWLSLLPIVGGVALAS 136 (302)
T ss_pred HHHHHHHHHHhccHHHHHHHHhcchHHHHHHHHHHhCC-CCcHHHHHHHHHHHHHHhhhc
Confidence 66778889999999999999999999999999999985 999999999999999987643
No 53
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=98.24 E-value=1.5e-05 Score=69.22 Aligned_cols=115 Identities=11% Similarity=0.057 Sum_probs=80.8
Q ss_pred eeHHHHhcCCCchHHHHHHHHHHHHHHHHHHhcCCccccccChhhhhHHHHHHHH-HHHHHHHHhhhhcccchhHHHHHH
Q 022511 6 INKAVIMQYAHSMTLLTLQQLATALLIQAGRQMGYTKSKAIDLMTAKKLLPVSLF-YNANVAFALASLKGVNIPMYIAIK 84 (296)
Q Consensus 6 ~nK~~l~~~~~p~~l~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~al~~~~~s~~~~l~ 84 (296)
+.|...++.+ |... ....+++.+.+.+...... .....+...+...+..+++ ......++++++++.+++.++.+.
T Consensus 166 ~~r~~~~~~~-~~~~-~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~l~lgv~~t~~~~~l~~~~~~~~~a~~as~~~ 242 (293)
T PRK10532 166 SGQRAGAEHG-PATV-AIGSLIAALIFVPIGALQA-GEALWHWSILPLGLAVAILSTALPYSLEMIALTRLPTRTFGTLM 242 (293)
T ss_pred HHHHHhccCC-chHH-HHHHHHHHHHHHHHHHHcc-CcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHH
Confidence 3444444433 4444 3455555555554443321 1112333333334556665 457777889999999999999999
Q ss_pred hhHHHHHHHHHHHhcCccCCccchhhhhhhhhhhHhhhc
Q 022511 85 RLTPLAVLVAGFFSGKGKPTTQVTLSVLLTATGCVIAAL 123 (296)
Q Consensus 85 ~~~pv~~~l~~~~~~~e~~~~~~~~~i~l~~~Gv~l~~~ 123 (296)
++.|++..++++++++|+++..++.+..+.+.|.+....
T Consensus 243 ~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~~ 281 (293)
T PRK10532 243 SMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGSTL 281 (293)
T ss_pred HhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999988754
No 54
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=98.24 E-value=2.7e-05 Score=57.47 Aligned_cols=71 Identities=14% Similarity=0.240 Sum_probs=58.9
Q ss_pred HHHHHHHHH-HHHHHHHHHHhccChhHHHHHhhhhHHHHHHhhheeeCCcccchhhHHHHHHHHHHhHHHHHHH
Q 022511 206 LILSLVMGI-ILNFTMFLCTIVNSALTTTIVGVLKGVGSTTLGFVVLGGVQVRALNVTGLLINTAGGVWYSYAK 278 (296)
Q Consensus 206 ~~~~g~~~~-~~~~~~~~~~~~~sa~~~s~~~~l~pi~~~~~~~~~~~e~~~t~~~~~G~~lil~g~~~~~~~~ 278 (296)
++..|..+. ..+...+.+.++.++ .++....+.|+++.++|+++++| +++..++.|.+++.+|+.+....+
T Consensus 37 ~~~~g~~~~~~~~~~~~~a~~~~~~-~v~~i~~~~pi~~~ll~~~~~~e-r~~~~~~~a~~l~~~Gv~li~~~~ 108 (113)
T PF13536_consen 37 LILAGLLGFGVAYLLFFYALSYAPA-LVAAIFSLSPIFTALLSWLFFKE-RLSPRRWLAILLILIGVILIAWSD 108 (113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCcH-HHHHHHHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHhhhh
Confidence 444455554 445666788899885 77899999999999999999995 999999999999999999987754
No 55
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=98.21 E-value=4.5e-05 Score=64.07 Aligned_cols=141 Identities=14% Similarity=0.165 Sum_probs=111.1
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHhhhHHHHHHHHHHHhCCchhhhhhhhcccCchhHHHHHH
Q 022511 128 FDLSGYSMALTSVFFQTMYLVLVEKSGAEDGLSSVEIMFYNSFLSLPFLVFLIIVTGEFPGSLSLLFSKSNSFSFLVILI 207 (296)
Q Consensus 128 ~~~~G~~~~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (296)
.+..|++.++.+-+.|+.-..+.|-+. + .++.++..+..+-+.+.+...........+.. +...++..+..+.
T Consensus 4 ~~~~Gil~~l~Ay~lwG~lp~y~kll~-~--~~~~eIlahRviwS~~~~l~ll~~~r~~~~~~----~~~~~p~~~~~~~ 76 (293)
T COG2962 4 DSRKGILLALLAYLLWGLLPLYFKLLE-P--LPATEILAHRVIWSFPFMLALLFLLRQWRELK----QLLKQPKTLLMLA 76 (293)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHc-c--CCHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH----HHHhCcHHHHHHH
Confidence 345799999999999999999998763 3 48999999999989888887776654433322 2223445566666
Q ss_pred HHHHHHHHHHHHHHHHHhccChhHHHHHhhhhHHHHHHhhheeeCCcccchhhHHHHHHHHHHhHHHHH
Q 022511 208 LSLVMGIILNFTMFLCTIVNSALTTTIVGVLKGVGSTTLGFVVLGGVQVRALNVTGLLINTAGGVWYSY 276 (296)
Q Consensus 208 ~~g~~~~~~~~~~~~~~~~~sa~~~s~~~~l~pi~~~~~~~~~~~e~~~t~~~~~G~~lil~g~~~~~~ 276 (296)
.++..-........++.++-....+|.=.+++|++.+++|.++++| +++..|++..++..+|+.....
T Consensus 77 l~a~li~~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkE-rls~~Q~iAV~lA~~GV~~~~~ 144 (293)
T COG2962 77 LTALLIGLNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKE-RLSRLQWIAVGLAAAGVLIQTW 144 (293)
T ss_pred HHHHHHHHHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHh-hccHHHHHHHHHHHHHHHHHHH
Confidence 6666655555656688999999999999999999999999999996 9999999999999999876543
No 56
>PRK13499 rhamnose-proton symporter; Provisional
Probab=98.15 E-value=0.0025 Score=56.01 Aligned_cols=225 Identities=12% Similarity=0.028 Sum_probs=141.3
Q ss_pred cChhhhhHHHHHHHHHHHHHHHHhhhhcccchhHHHHH-HhhHHHHHHHHHHHhcCccC---Cc----cchhhhhhhhhh
Q 022511 46 IDLMTAKKLLPVSLFYNANVAFALASLKGVNIPMYIAI-KRLTPLAVLVAGFFSGKGKP---TT----QVTLSVLLTATG 117 (296)
Q Consensus 46 ~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~s~~~~l-~~~~pv~~~l~~~~~~~e~~---~~----~~~~~i~l~~~G 117 (296)
.+.+.+..-+..|.+.+..+..+..+.++..+|...-+ ..++.+...++..++++|-. +. .-..++++.++|
T Consensus 68 ~~~~~~~~~~l~G~~W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliG 147 (345)
T PRK13499 68 FSGSTLLPVFLFGALWGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIG 147 (345)
T ss_pred cCHHHHHHHHHHHHHHHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHH
Confidence 45555566777888889999999999999988876644 45778888888888888755 32 245778888888
Q ss_pred hHhhhc----CCc--------cc-chhHHHHHHHHHHHHHHHH-------HHHHHhccCCCCCHHHHHHHHhh---hHHH
Q 022511 118 CVIAAL----GDF--------SF-DLSGYSMALTSVFFQTMYL-------VLVEKSGAEDGLSSVEIMFYNSF---LSLP 174 (296)
Q Consensus 118 v~l~~~----~~~--------~~-~~~G~~~~l~s~~~~a~~~-------v~~k~~~~~~~~~~~~~~~~~~~---~~~~ 174 (296)
+++.+. .|. ++ ...|+.+++++.+.++.|. ...+.. .+.+.++.....-+.. .+..
T Consensus 148 i~l~s~Ag~~k~~~~~~~~~~~~~~~KGi~ialisgi~~~~f~~~~~~~~~~~~~a-~~~g~~~~~~~lp~~~~~~~G~~ 226 (345)
T PRK13499 148 VAIVGRAGQLKERKMGIKKAEEFNLKKGLILAVMSGIFSACFSFAMDAGKPMHEAA-AALGVDPLYAALPSYVVIMGGGA 226 (345)
T ss_pred HHHHHHhhhhcccccccccccccchHhHHHHHHHHHHHHHHHHHHHhhccchhhhh-hhcCCCchHHHHHHHHHHHHHHH
Confidence 888765 222 12 2579999999999999999 433332 1234566554444433 2222
Q ss_pred HHH-HHHHH---hCCchhhhhhhhcccCc----hhHHHHHHHHHHHHHHHHHHHHHHHhccChh----HHHHHhhhhHHH
Q 022511 175 FLV-FLIIV---TGEFPGSLSLLFSKSNS----FSFLVILILSLVMGIILNFTMFLCTIVNSAL----TTTIVGVLKGVG 242 (296)
Q Consensus 175 ~l~-~~~~~---~~~~~~~~~~~~~~~~~----~~~~~~~~~~g~~~~~~~~~~~~~~~~~sa~----~~s~~~~l~pi~ 242 (296)
..- ..... .++..+... +...+ ........+.|+.-...+.++....++.+.. ...+.+.+.-++
T Consensus 227 ~~n~~~~~~~~~k~~~~~~~~---~~~~~~~~~~~n~l~~~l~G~~W~~~~~~y~~~~~~~g~~~~~~sw~l~m~~~Vii 303 (345)
T PRK13499 227 ITNLGFCFIRLAKNKDLSLKA---DFSLAKPLLITNVLLSALAGVMWYLQFFFYAMGHSKLGAQYDFVSWMLHMSFYVLC 303 (345)
T ss_pred HHHHHHHHHHHhhCCCcccch---hccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccchHHHHHhccHHHHH
Confidence 221 11111 112111100 11101 2334455677777777777766666666333 223444667788
Q ss_pred HHHhhheeeCCcccc------hhhHHHHHHHHHHhHHHHH
Q 022511 243 STTLGFVVLGGVQVR------ALNVTGLLINTAGGVWYSY 276 (296)
Q Consensus 243 ~~~~~~~~~~e~~~t------~~~~~G~~lil~g~~~~~~ 276 (296)
+.+.|. ++|| .=+ ...++|.+++++|..+...
T Consensus 304 stlwGi-~lkE-~K~a~~k~~~~l~~G~vliI~g~~lig~ 341 (345)
T PRK13499 304 GNLWGL-VLKE-WKGASRRPVRVLSLGCVVIILAANIVGL 341 (345)
T ss_pred HHHhhh-hhhh-ccCCCccchhHHHHHHHHHHHHHHHHhh
Confidence 898998 4886 444 6779999999999887654
No 57
>PRK11689 aromatic amino acid exporter; Provisional
Probab=98.13 E-value=9e-05 Score=64.42 Aligned_cols=130 Identities=16% Similarity=0.159 Sum_probs=92.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHhhhHHHHHHHHHHHhCCchhhhhhhhcccCchhHHHHHHHHH
Q 022511 131 SGYSMALTSVFFQTMYLVLVEKSGAEDGLSSVEIMFYNSFLSLPFLVFLIIVTGEFPGSLSLLFSKSNSFSFLVILILSL 210 (296)
Q Consensus 131 ~G~~~~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 210 (296)
.+++.++.++++|+...+..|...++ .+|.....+....+.+++.+.. ..+... .. + +..++..+
T Consensus 4 ~~~l~~l~a~~~Wg~~~~~~k~~~~~--~~P~~~~~~R~~~a~l~l~~~~----~~~~~~----~~--~---~~~~~~~~ 68 (295)
T PRK11689 4 KATLIGLIAILLWSTMVGLIRGVSES--LGPVGGAAMIYSVSGLLLLLTV----GFPRLR----QF--P---KRYLLAGG 68 (295)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHcc--CChHHHHHHHHHHHHHHHHHHc----cccccc----cc--c---HHHHHHHh
Confidence 45778899999999999999987665 5999999999888888777642 111110 01 1 11122223
Q ss_pred HHHHHHHHHHHHHH----hccChhHHHHHhhhhHHHHHHhhheeeCCcccchhhHHHHHHHHHHhHHHHH
Q 022511 211 VMGIILNFTMFLCT----IVNSALTTTIVGVLKGVGSTTLGFVVLGGVQVRALNVTGLLINTAGGVWYSY 276 (296)
Q Consensus 211 ~~~~~~~~~~~~~~----~~~sa~~~s~~~~l~pi~~~~~~~~~~~e~~~t~~~~~G~~lil~g~~~~~~ 276 (296)
+.......+.+... +..++..++++.++.|+++.++++++++| +++..+++|.++.+.|+.+...
T Consensus 69 l~~~~~~~~~~~a~~~~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e-~~~~~~~~g~~l~~~Gv~li~~ 137 (295)
T PRK11689 69 LLFVSYEICLALSLGYANTRRQAIEVGMVNYLWPSLTILFAVLFNGQ-KANWLLIPGLLLALAGVAWVLG 137 (295)
T ss_pred HHHHHHHHHHHHHHHHhhccccchHHHHHHHHhHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhHhheec
Confidence 22222223333333 45678888999999999999999999985 9999999999999999887653
No 58
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=98.06 E-value=0.00013 Score=63.52 Aligned_cols=124 Identities=13% Similarity=0.086 Sum_probs=90.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHhhhHHHHHHHHHHHhCCchhhhhhhhcccCchhHHHHHHHHHHHH
Q 022511 134 SMALTSVFFQTMYLVLVEKSGAEDGLSSVEIMFYNSFLSLPFLVFLIIVTGEFPGSLSLLFSKSNSFSFLVILILSLVMG 213 (296)
Q Consensus 134 ~~~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 213 (296)
...++++++|+...+..|...++ .+|....++...++++.+.+.... + . . + +......|...
T Consensus 7 l~~l~~~~~Wg~~~~~~k~~~~~--~~p~~~~~~R~~~a~~~l~~~~~~--~--~-------~--~---~~~~~~~g~~~ 68 (299)
T PRK11453 7 VLALLVVVVWGLNFVVIKVGLHN--MPPLMLAGLRFMLVAFPAIFFVAR--P--K-------V--P---LNLLLGYGLTI 68 (299)
T ss_pred HHHHHHHHHHhhhHHHHHHHHhc--CCHHHHHHHHHHHHHHHHHHHhcC--C--C-------C--c---hHHHHHHHHHH
Confidence 56788999999999999987654 699999999988876655543211 1 0 0 1 11122233333
Q ss_pred HHHH-HHHHHHHhc-cChhHHHHHhhhhHHHHHHhhheeeCCcccchhhHHHHHHHHHHhHHHHH
Q 022511 214 IILN-FTMFLCTIV-NSALTTTIVGVLKGVGSTTLGFVVLGGVQVRALNVTGLLINTAGGVWYSY 276 (296)
Q Consensus 214 ~~~~-~~~~~~~~~-~sa~~~s~~~~l~pi~~~~~~~~~~~e~~~t~~~~~G~~lil~g~~~~~~ 276 (296)
...+ .+.+...++ .++...+++.+..|+++.++++++++| +++..+++|.++.++|+.+...
T Consensus 69 ~~~~~~~~~~~~~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e-~~~~~~~~~~~l~~~Gv~ll~~ 132 (299)
T PRK11453 69 SFGQFAFLFCAINFGMPAGLASLVLQAQAFFTIVLGAFTFGE-RLQGKQLAGIALAIFGVLVLIE 132 (299)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHhHHHHHHHHHHHHhcC-cCcHHHHHHHHHHHHhHHHhcc
Confidence 3333 344556665 577888999999999999999999985 9999999999999999887653
No 59
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=98.05 E-value=6.4e-05 Score=65.14 Aligned_cols=132 Identities=18% Similarity=0.216 Sum_probs=96.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHhhhHHHHHHHHHHHhCCchhhhhhhhcccCchhHHHHHHHHHH
Q 022511 132 GYSMALTSVFFQTMYLVLVEKSGAEDGLSSVEIMFYNSFLSLPFLVFLIIVTGEFPGSLSLLFSKSNSFSFLVILILSLV 211 (296)
Q Consensus 132 G~~~~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 211 (296)
|++++++++++|+...+..|+.. +.++.+.. ...++..+.......... +. .+....+..-++.|.
T Consensus 2 ~~l~~lia~~~wGs~g~~~k~~~---g~~~~~~~--~~~~g~l~~~~~~~~~~~-~~--------~~~~~~~~~g~l~G~ 67 (290)
T TIGR00776 2 DILIALIPALFWGSFVLINVKIG---GGPYSQTL--GTTFGALILSIAIAIFVL-PE--------FWALSIFLVGLLSGA 67 (290)
T ss_pred chHHHHHHHHHHhhhHHHHhccC---CCHHHHHH--HHHHHHHHHHHHHHHHhC-Cc--------ccccHHHHHHHHHHH
Confidence 67899999999999999999874 44555554 234444444443333221 11 112344555567777
Q ss_pred HHHHHHHHHHHHHhccChhHHHHHhh-hhHHHHHHhhheeeCCcccchhh----HHHHHHHHHHhHHHHHHH
Q 022511 212 MGIILNFTMFLCTIVNSALTTTIVGV-LKGVGSTTLGFVVLGGVQVRALN----VTGLLINTAGGVWYSYAK 278 (296)
Q Consensus 212 ~~~~~~~~~~~~~~~~sa~~~s~~~~-l~pi~~~~~~~~~~~e~~~t~~~----~~G~~lil~g~~~~~~~~ 278 (296)
.-...+.+++.++++.+....-.+.+ +.++...+++.+++|| +.+..+ ++|.++++.|+.+....+
T Consensus 68 ~w~ig~~~~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e-~~t~~~~~~~~~g~~l~l~G~~l~~~~~ 138 (290)
T TIGR00776 68 FWALGQINQFKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGE-WSTSIQTLLGLLALILIIIGVYLTSRSK 138 (290)
T ss_pred HHHhhhhhHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhh-ccchHHHHHHHHHHHHHHHhHheEEecc
Confidence 77777788999999999888877767 8888999999999995 999999 999999999988875543
No 60
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.02 E-value=3.4e-05 Score=65.56 Aligned_cols=216 Identities=10% Similarity=-0.000 Sum_probs=132.6
Q ss_pred hHHHHHHHHHHHHHHHHhhhhcccchhHHHHHHhhHHHHHHHHHHHhcCccCCccchhhhhhhhhhhHhhhcCCccc---
Q 022511 52 KKLLPVSLFYNANVAFALASLKGVNIPMYIAIKRLTPLAVLVAGFFSGKGKPTTQVTLSVLLTATGCVIAALGDFSF--- 128 (296)
Q Consensus 52 ~~~l~~~~~~~~~~~~~~~al~~~~~s~~~~l~~~~pv~~~l~~~~~~~e~~~~~~~~~i~l~~~Gv~l~~~~~~~~--- 128 (296)
+.+....+.+..+-..++.|..+.|++..+-+-+++.+..++++..++|||.+....+++.++++|..++.....+.
T Consensus 65 ~~Ww~G~ltm~vGei~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV~haP~e~~i 144 (335)
T KOG2922|consen 65 PLWWAGMLTMIVGEIANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTIVIHAPKEQEI 144 (335)
T ss_pred HHHHHHHHHHHHHhHhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEEEecCccccc
Confidence 34445555688999999999999999999999999999999999999999999999999999999998876422111
Q ss_pred -c---------hhHHH-HHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHhhhHHHHHH-----------HHHHHhCCc
Q 022511 129 -D---------LSGYS-MALTSVFFQTMYLVLVEKSGAEDGLSSVEIMFYNSFLSLPFLV-----------FLIIVTGEF 186 (296)
Q Consensus 129 -~---------~~G~~-~~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~l~-----------~~~~~~~~~ 186 (296)
+ -++++ ++.+-.....+-..+.|. +++ ...+..|-.+.+.+-.+ +-..+.|.
T Consensus 145 ~t~~el~~~~~~~~Fliy~~~iil~~~il~~~~~p---~~g--~tnilvyi~i~s~iGS~tV~svKalg~aiklt~~g~- 218 (335)
T KOG2922|consen 145 ESVEEVWELATEPGFLVYVIIIILIVLILIFFYAP---RYG--QTNILVYIGICSLIGSLTVMSVKALGIAIKLTFSGN- 218 (335)
T ss_pred ccHHHHHHHhcCccHHHHHHHHHHHHHHHheeecc---ccc--ccceeehhhHhhhhcceeeeeHHHHHHHHHHHhcCC-
Confidence 1 12221 111111111111112221 221 11222333333332110 00011111
Q ss_pred hhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHhhh-hHHHHHHhhheeeCCc-ccc----hhh
Q 022511 187 PGSLSLLFSKSNSFSFLVILILSLVMGIILNFTMFLCTIVNSALTTTIVGVL-KGVGSTTLGFVVLGGV-QVR----ALN 260 (296)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~sa~~~s~~~~l-~pi~~~~~~~~~~~e~-~~t----~~~ 260 (296)
++...+..|..++....+........+.+++..++..++.+.++ -..+++..|.++|+|- ..+ ...
T Consensus 219 --------~ql~~~~ty~~~l~~~~~~~~Q~~yLNkAL~~fntslV~PiyyV~fTtl~I~as~I~Fkew~~~~~~~i~~~ 290 (335)
T KOG2922|consen 219 --------NQLFYPLTWIFLLVVATCVSTQMNYLNKALDLFNTSIVSPIYYVMFTTLVILASAILFKEWSGQDALDIAGE 290 (335)
T ss_pred --------cccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchhHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHH
Confidence 12223344555555555555555667788999988777766665 5667777888888751 223 345
Q ss_pred HHHHHHHHHHhHHHHHHHHhh
Q 022511 261 VTGLLINTAGGVWYSYAKYQQ 281 (296)
Q Consensus 261 ~~G~~lil~g~~~~~~~~~~~ 281 (296)
..|...++.|+.+....|+.+
T Consensus 291 ~~Gf~ti~~G~flL~~~kd~~ 311 (335)
T KOG2922|consen 291 LCGFVTIFLGIFLLHRTKDME 311 (335)
T ss_pred HHhHHHhhheeeEeeeecccc
Confidence 678888999988887665443
No 61
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=97.97 E-value=0.00018 Score=62.75 Aligned_cols=131 Identities=15% Similarity=0.057 Sum_probs=96.8
Q ss_pred HHHHHHHHHHHhccCCCCC--HHHHHHHHhhhHHHHHHHHHHHhCCchhhhhhhhcccCchhHHHHHHHHHHHHHHHHHH
Q 022511 142 FQTMYLVLVEKSGAEDGLS--SVEIMFYNSFLSLPFLVFLIIVTGEFPGSLSLLFSKSNSFSFLVILILSLVMGIILNFT 219 (296)
Q Consensus 142 ~~a~~~v~~k~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 219 (296)
++..+.+.++++.++...+ +..+++.|.....+...+......... +...+ +.-....++...+...+
T Consensus 11 ~~~~~g~~qE~i~~~~~~~~~~~~lt~~q~~~~~~~~~~~~~~~~~~~-------~~~~~---~~~~~~~~~~~~~~~~~ 80 (303)
T PF08449_consen 11 GCCSYGILQEKIMTTPYGSPFPLFLTFVQFAFNALFSFILLSLFKFPK-------SRKIP---LKKYAILSFLFFLASVL 80 (303)
T ss_pred HHHHHHHHHHHHHcCCCCCcccHHHHHHHHHHHHHHHHHHHHhccccC-------CCcCh---HHHHHHHHHHHHHHHHH
Confidence 3444667888887665445 888888888888777776655543101 01111 22334445666666678
Q ss_pred HHHHHhccChhHHHHHhhhhHHHHHHhhheeeCCcccchhhHHHHHHHHHHhHHHHHHHHhhhh
Q 022511 220 MFLCTIVNSALTTTIVGVLKGVGSTTLGFVVLGGVQVRALNVTGLLINTAGGVWYSYAKYQQKK 283 (296)
Q Consensus 220 ~~~~~~~~sa~~~s~~~~l~pi~~~~~~~~~~~e~~~t~~~~~G~~lil~g~~~~~~~~~~~~~ 283 (296)
.+.+.++.+-.+..+....+|+.+++.+++++| ++.+..++.+..++.+|+.+....+.++++
T Consensus 81 ~~~al~~i~~p~~~~~ks~~~i~vmi~~~l~~~-k~y~~~~~~~v~li~~Gv~~~~~~~~~~~~ 143 (303)
T PF08449_consen 81 SNAALKYISYPTQIVFKSSKPIPVMILGVLILG-KRYSRRQYLSVLLITIGVAIFTLSDSSSSS 143 (303)
T ss_pred HHHHHHhCChHHHHHHhhhHHHHHHHHHHHhcC-ccccHHHHHHHHHHHhhHheeeeccccccc
Confidence 888899999999999999999999999999998 599999999999999999999876654433
No 62
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=97.97 E-value=5.2e-05 Score=57.10 Aligned_cols=71 Identities=17% Similarity=0.115 Sum_probs=61.8
Q ss_pred HHHHH-HHHHHHHHHhhhhcccchhHHHHHHhhHHHHHHHHHHH--hcCccCCccchhhhhhhhhhhHhhhcCC
Q 022511 55 LPVSL-FYNANVAFALASLKGVNIPMYIAIKRLTPLAVLVAGFF--SGKGKPTTQVTLSVLLTATGCVIAALGD 125 (296)
Q Consensus 55 l~~~~-~~~~~~~~~~~al~~~~~s~~~~l~~~~pv~~~l~~~~--~~~e~~~~~~~~~i~l~~~Gv~l~~~~~ 125 (296)
+..++ ++.....+++++++..|++.+.-+.+..+..+++.++. ++||+++..++.++.+.++|+.++..++
T Consensus 51 i~lgl~~~~la~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~~~ 124 (129)
T PRK02971 51 VLLGLAGYALSMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINLPT 124 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccCC
Confidence 33444 57899999999999999999999999999888888885 8999999999999999999999976543
No 63
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=97.87 E-value=0.00034 Score=61.33 Aligned_cols=141 Identities=13% Similarity=0.059 Sum_probs=95.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhccCCCCC-HHHHHHHHhhhHHHHHHHHHHHhCCchhhhhhhhcccCchhHHHHHHH
Q 022511 130 LSGYSMALTSVFFQTMYLVLVEKSGAEDGLS-SVEIMFYNSFLSLPFLVFLIIVTGEFPGSLSLLFSKSNSFSFLVILIL 208 (296)
Q Consensus 130 ~~G~~~~l~s~~~~a~~~v~~k~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (296)
+.+.++.-.-++|-+...+..+.+.++ +.+ |..-.+.+...-.+...+....-.. .+ + .... ....|+..++
T Consensus 12 ~~~~~lgQ~lsl~~~~t~~~s~~l~~~-~~~~P~~Qs~~~Y~~l~~vy~~~~~~r~~-~~--~-~~~~--~~~~~w~y~l 84 (334)
T PF06027_consen 12 WIVLLLGQVLSLCITGTGTFSSLLANK-GVNIPTFQSFFNYVLLALVYTPILLYRRG-FK--K-WLKV--LKRPWWKYFL 84 (334)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHhc-CccCcHHHHHHHHHHHHHHHhhhhhhccc-cc--c-chhh--cchhHHHHHH
Confidence 345666666677777777777766554 333 3333344443333333332222110 00 0 0000 1123445556
Q ss_pred HHHHHHHHHHHHHHHHhccChhHHHHHhhhhHHHHHHhhheeeCCcccchhhHHHHHHHHHHhHHHHHHH
Q 022511 209 SLVMGIILNFTMFLCTIVNSALTTTIVGVLKGVGSTTLGFVVLGGVQVRALNVTGLLINTAGGVWYSYAK 278 (296)
Q Consensus 209 ~g~~~~~~~~~~~~~~~~~sa~~~s~~~~l~pi~~~~~~~~~~~e~~~t~~~~~G~~lil~g~~~~~~~~ 278 (296)
.+++=...+++...+.++++.+.++++.....+++.+++++++++ +.++.|++|+.++++|+.+.....
T Consensus 85 la~~Dv~aN~~~v~a~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~-ry~~~~~~gv~i~i~Gv~lv~~sD 153 (334)
T PF06027_consen 85 LALLDVEANYLVVLAYQYTSVTSVQLLDCTSIPFVMILSFIFLKR-RYSWFHILGVLICIAGVVLVVVSD 153 (334)
T ss_pred HHHHHHHHHHHHHHHhhcccHhHHHhhhhhhhHHHHHHHHHHHHh-hhhHHHHHHHHHHHhhhhheeeec
Confidence 688888889999999999999999999999999999999999995 999999999999999998876654
No 64
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=97.84 E-value=0.00015 Score=53.17 Aligned_cols=63 Identities=14% Similarity=-0.062 Sum_probs=53.1
Q ss_pred HHHHHH-HHHHHHHhccChhHHHHHhhhhHHHHHHhhheeeCCcccchhhHHHHHHHHHHhHHHH
Q 022511 212 MGIILN-FTMFLCTIVNSALTTTIVGVLKGVGSTTLGFVVLGGVQVRALNVTGLLINTAGGVWYS 275 (296)
Q Consensus 212 ~~~~~~-~~~~~~~~~~sa~~~s~~~~l~pi~~~~~~~~~~~e~~~t~~~~~G~~lil~g~~~~~ 275 (296)
..+... ++...+.++.+...+...-.+.++.+.+.|+++||| ++|..+++|..+++.|+++..
T Consensus 45 ~~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E-~ls~~~~~Gi~lii~Gv~~i~ 108 (111)
T PRK15051 45 ACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHE-PVSPRHWCGVAFIIGGIVILG 108 (111)
T ss_pred HHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHHHHHHHh
Confidence 333334 445577899999888888889999999999999985 999999999999999998764
No 65
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=97.84 E-value=0.0011 Score=50.62 Aligned_cols=131 Identities=18% Similarity=0.221 Sum_probs=97.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHhhhHHHHHHHHHHHhCCchhhhhhhhcccCchhHHHHHHHHHHH
Q 022511 133 YSMALTSVFFQTMYLVLVEKSGAEDGLSSVEIMFYNSFLSLPFLVFLIIVTGEFPGSLSLLFSKSNSFSFLVILILSLVM 212 (296)
Q Consensus 133 ~~~~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 212 (296)
.++++.+.++-+.+..++.++.++.+ |++...+.+...+++.+.......++. +. ....+.+.| ..+.|++
T Consensus 3 ~lla~~aG~~i~~q~~~N~~L~~~~g-s~~~as~i~~~~G~i~~~i~~~~~~~~-~~-----~~~~~~p~w--~~lGG~l 73 (138)
T PF04657_consen 3 ILLALLAGALIALQAAFNGQLGKALG-SPLVASFISFGVGFILLLIILLITGRP-SL-----ASLSSVPWW--AYLGGLL 73 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHHHHHHHHhccc-cc-----chhccCChH--HhccHHH
Confidence 56788899999999999988877653 699999999999999988888877653 22 111122222 2347888
Q ss_pred HHHHHHHHHHHHhccChhHHHHHhhh-hHHHHHHhhhe-eeCC--cccchhhHHHHHHHHHHhH
Q 022511 213 GIILNFTMFLCTIVNSALTTTIVGVL-KGVGSTTLGFV-VLGG--VQVRALNVTGLLINTAGGV 272 (296)
Q Consensus 213 ~~~~~~~~~~~~~~~sa~~~s~~~~l-~pi~~~~~~~~-~~~e--~~~t~~~~~G~~lil~g~~ 272 (296)
+...-.+....+++.++..+...... +-+.+.+++.+ +||. +++++..++|.+++++|+.
T Consensus 74 G~~~V~~~~~~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~ 137 (138)
T PF04657_consen 74 GVFFVLSNIILVPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVI 137 (138)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHh
Confidence 88888888888899999888777666 55556667764 2322 3889999999999999975
No 66
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=97.78 E-value=0.00025 Score=52.49 Aligned_cols=71 Identities=8% Similarity=0.049 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHHHHHHhhhhcccchhHHHHHH-hhHHHHHHHHHHHhcCccCCccchhhhhhhhhhhHhhhc
Q 022511 53 KLLPVSLFYNANVAFALASLKGVNIPMYIAIK-RLTPLAVLVAGFFSGKGKPTTQVTLSVLLTATGCVIAAL 123 (296)
Q Consensus 53 ~~l~~~~~~~~~~~~~~~al~~~~~s~~~~l~-~~~pv~~~l~~~~~~~e~~~~~~~~~i~l~~~Gv~l~~~ 123 (296)
......++++.+.++...+++++|.+.+-.+- ...-+.+++.+.+++||+++..++.++.+.++|++.+-.
T Consensus 32 ~~~~~i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l 103 (120)
T PRK10452 32 GFILMLVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKS 103 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhc
Confidence 34566677889999999999999999988774 688899999999999999999999999999999988754
No 67
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=97.72 E-value=0.0016 Score=55.92 Aligned_cols=140 Identities=16% Similarity=0.165 Sum_probs=97.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHhhhHHHHHHHHHHHhCCchhhhhhhhcccCchhHHHHHHHH
Q 022511 130 LSGYSMALTSVFFQTMYLVLVEKSGAEDGLSSVEIMFYNSFLSLPFLVFLIIVTGEFPGSLSLLFSKSNSFSFLVILILS 209 (296)
Q Consensus 130 ~~G~~~~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (296)
..+....+..++.++......|...++ ..+.....++....+.+...+...... .... +.. ...++..+..
T Consensus 6 ~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~----~~~--~~~~~~~~~~ 76 (292)
T COG0697 6 LLGLLALLLWGLLWGLSFIALKLAVES-LDPFLFAAALRFLIAALLLLPLLLLEP--RGLR----PAL--RPWLLLLLLA 76 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcc-cCChHHHHHHHHHHHHHHHHHHHHhhc--cccc----ccc--cchHHHHHHH
Confidence 456778888889999999988887655 346666666666666555333222211 0000 111 1123344444
Q ss_pred HHHHHHHHHHHHHHHhccChhHHHHHhhhhHHHHHHhhh-eeeCCcccchhhHHHHHHHHHHhHHHHHHHH
Q 022511 210 LVMGIILNFTMFLCTIVNSALTTTIVGVLKGVGSTTLGF-VVLGGVQVRALNVTGLLINTAGGVWYSYAKY 279 (296)
Q Consensus 210 g~~~~~~~~~~~~~~~~~sa~~~s~~~~l~pi~~~~~~~-~~~~e~~~t~~~~~G~~lil~g~~~~~~~~~ 279 (296)
+........+.+...++.++...+...+..|+++.++++ ++++| +++..++.|..+.+.|+.+....+.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e-~~~~~~~~~~~~~~~Gv~lv~~~~~ 146 (292)
T COG0697 77 LLGLALPFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGE-RLSLLQILGILLALAGVLLILLGGG 146 (292)
T ss_pred HHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccC-CCcHHHHHHHHHHHHhHHheecCCC
Confidence 555555557777889999999999999999999999997 66685 9999999999999999998876543
No 68
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=97.72 E-value=0.00039 Score=50.76 Aligned_cols=70 Identities=11% Similarity=0.097 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHHHHhhhhcccchhHHHHHH-hhHHHHHHHHHHHhcCccCCccchhhhhhhhhhhHhhhc
Q 022511 54 LLPVSLFYNANVAFALASLKGVNIPMYIAIK-RLTPLAVLVAGFFSGKGKPTTQVTLSVLLTATGCVIAAL 123 (296)
Q Consensus 54 ~l~~~~~~~~~~~~~~~al~~~~~s~~~~l~-~~~pv~~~l~~~~~~~e~~~~~~~~~i~l~~~Gv~l~~~ 123 (296)
....-+++..+.++...+++.+|.+.+-.+- ...-+.+++.+++++||++++.++.++.+.++|++.+-.
T Consensus 33 ~i~~~~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l 103 (110)
T PRK09541 33 SVGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINL 103 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 3445556788888899999999999988874 478889999999999999999999999999999998754
No 69
>PRK11431 multidrug efflux system protein; Provisional
Probab=97.68 E-value=0.00052 Score=49.59 Aligned_cols=70 Identities=11% Similarity=0.084 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHHHHHhhhhcccchhHHHHHHh-hHHHHHHHHHHHhcCccCCccchhhhhhhhhhhHhhh
Q 022511 53 KLLPVSLFYNANVAFALASLKGVNIPMYIAIKR-LTPLAVLVAGFFSGKGKPTTQVTLSVLLTATGCVIAA 122 (296)
Q Consensus 53 ~~l~~~~~~~~~~~~~~~al~~~~~s~~~~l~~-~~pv~~~l~~~~~~~e~~~~~~~~~i~l~~~Gv~l~~ 122 (296)
..+....++..+.++...+++.+|.+.+-.+=. ...+.+++.+++++||++++.++.++.+.+.|++.+-
T Consensus 31 ~~~~~i~~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l~ 101 (105)
T PRK11431 31 PSIITVTAMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGLK 101 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhh
Confidence 344556678889999999999999988766555 7888999999999999999999999999999998863
No 70
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=97.66 E-value=0.00055 Score=53.15 Aligned_cols=116 Identities=11% Similarity=0.071 Sum_probs=83.8
Q ss_pred eeHHHHhc-----CC-CchHHHHHHHHHHHHHHHHHHh-cCCccc----ccc-------ChhhhhHHHHHHHHHHHHHHH
Q 022511 6 INKAVIMQ-----YA-HSMTLLTLQQLATALLIQAGRQ-MGYTKS----KAI-------DLMTAKKLLPVSLFYNANVAF 67 (296)
Q Consensus 6 ~nK~~l~~-----~~-~p~~l~~~r~~~~~~~l~~~~~-~~~~~~----~~~-------~~~~~~~~l~~~~~~~~~~~~ 67 (296)
+.|..+++ .. -|..+.......+.+.+.+... .+..+. ... +.+.....+..+++....+..
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~ 97 (153)
T PF03151_consen 18 LIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNFIFLLILSGLLAFLYNLS 97 (153)
T ss_pred HHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHHHHHHHHHHHHHHHHHHH
Confidence 34555554 22 3555666666666655555432 222110 000 223344555666777788999
Q ss_pred HhhhhcccchhHHHHHHhhHHHHHHHHHHHhcCccCCccchhhhhhhhhhhHhh
Q 022511 68 ALASLKGVNIPMYIAIKRLTPLAVLVAGFFSGKGKPTTQVTLSVLLTATGCVIA 121 (296)
Q Consensus 68 ~~~al~~~~~s~~~~l~~~~pv~~~l~~~~~~~e~~~~~~~~~i~l~~~Gv~l~ 121 (296)
.+..++++++-+.+++.....+.+.++++++++|+++..++.|+.+.+.|+.+.
T Consensus 98 ~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~Y 151 (153)
T PF03151_consen 98 SFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLLY 151 (153)
T ss_pred HHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHhee
Confidence 999999999999999999999999999999999999999999999999999764
No 71
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=97.66 E-value=0.00043 Score=49.54 Aligned_cols=72 Identities=14% Similarity=0.082 Sum_probs=60.8
Q ss_pred hHHHHHHHHHHHHHHHHhhhhcccchhHHHHH-HhhHHHHHHHHHHHhcCccCCccchhhhhhhhhhhHhhhc
Q 022511 52 KKLLPVSLFYNANVAFALASLKGVNIPMYIAI-KRLTPLAVLVAGFFSGKGKPTTQVTLSVLLTATGCVIAAL 123 (296)
Q Consensus 52 ~~~l~~~~~~~~~~~~~~~al~~~~~s~~~~l-~~~~pv~~~l~~~~~~~e~~~~~~~~~i~l~~~Gv~l~~~ 123 (296)
...+..-+++..+.++...|+|++|.+.+-.+ ...-.+.+++.+++++||+.+..++.++.+.++|++.+-.
T Consensus 31 ~~~il~~v~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~Lk~ 103 (106)
T COG2076 31 WPSILTIVGYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGLKL 103 (106)
T ss_pred chHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHhhh
Confidence 44555666788888999999999998887654 4577888999999999999999999999999999987643
No 72
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=97.61 E-value=0.0011 Score=48.11 Aligned_cols=69 Identities=16% Similarity=0.120 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhcccchhHHHHHHh-hHHHHHHHHHHHhcCccCCccchhhhhhhhhhhHhh
Q 022511 53 KLLPVSLFYNANVAFALASLKGVNIPMYIAIKR-LTPLAVLVAGFFSGKGKPTTQVTLSVLLTATGCVIA 121 (296)
Q Consensus 53 ~~l~~~~~~~~~~~~~~~al~~~~~s~~~~l~~-~~pv~~~l~~~~~~~e~~~~~~~~~i~l~~~Gv~l~ 121 (296)
........+..+.++...+++++|.+.+-.+=+ ..-+.+++.+.+++||+++..++.++.+.+.|++.+
T Consensus 37 ~~~~~~~~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~l 106 (109)
T PRK10650 37 YGILSLAAVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMI 106 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHh
Confidence 344555667888899999999999998765544 777889999999999999999999999999999875
No 73
>PRK13499 rhamnose-proton symporter; Provisional
Probab=97.59 E-value=0.0014 Score=57.56 Aligned_cols=137 Identities=18% Similarity=0.061 Sum_probs=90.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHH--hhhHHHHHHH--HHHHhCCchhhhhhhhcccCchhHHHH
Q 022511 130 LSGYSMALTSVFFQTMYLVLVEKSGAEDGLSSVEIMFYN--SFLSLPFLVF--LIIVTGEFPGSLSLLFSKSNSFSFLVI 205 (296)
Q Consensus 130 ~~G~~~~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~--~~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (296)
..|+++++++++|++...+-.|| .|+. ++|.. +- .+++-++... .....++..+.. ...+...+..
T Consensus 6 ~~G~~~~~i~~~~~GS~~~p~K~-~k~w---~wE~~-W~v~gi~~wl~~~~~~g~~~~~~f~~~~-----~~~~~~~~~~ 75 (345)
T PRK13499 6 ILGIIWHLIGGASSGSFYAPFKK-VKKW---SWETM-WSVGGIFSWLILPWLIAALLLPDFWAYY-----SSFSGSTLLP 75 (345)
T ss_pred HHHHHHHHHHHHHhhcccccccc-cCCC---chhHH-HHHHHHHHHHHHHHHHHHHHhhhHHHHH-----HhcCHHHHHH
Confidence 47999999999999999999988 4443 44433 22 1111111111 111112222221 1124566777
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCh-hHHHHHhhhhHHHHHHhhheeeCCccc-------chhhHHHHHHHHHHhHHHHHH
Q 022511 206 LILSLVMGIILNFTMFLCTIVNSA-LTTTIVGVLKGVGSTTLGFVVLGGVQV-------RALNVTGLLINTAGGVWYSYA 277 (296)
Q Consensus 206 ~~~~g~~~~~~~~~~~~~~~~~sa-~~~s~~~~l~pi~~~~~~~~~~~e~~~-------t~~~~~G~~lil~g~~~~~~~ 277 (296)
-++.|++-...+..++..+|+.+- ....+..-++-+.+.+.+.+++|| -. ...-.+|.+++++|+.+..+.
T Consensus 76 ~~l~G~~W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~ge-w~~~~~t~~g~~~~~gv~liliGi~l~s~A 154 (345)
T PRK13499 76 VFLFGALWGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGN-FDVLLATNGGRMTLLGVLVALIGVAIVGRA 154 (345)
T ss_pred HHHHHHHHHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccc-cccccccchHHHHHHHHHHHHHHHHHHHHh
Confidence 788898888888888888888875 444555566888889999999974 22 145788999999999998874
No 74
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=97.46 E-value=0.00031 Score=59.10 Aligned_cols=81 Identities=16% Similarity=0.068 Sum_probs=70.5
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHhhhhHHHHHHhhheeeCCcccchhhHHHHHHHHHHhHHHHHHH
Q 022511 199 SFSFLVILILSLVMGIILNFTMFLCTIVNSALTTTIVGVLKGVGSTTLGFVVLGGVQVRALNVTGLLINTAGGVWYSYAK 278 (296)
Q Consensus 199 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~sa~~~s~~~~l~pi~~~~~~~~~~~e~~~t~~~~~G~~lil~g~~~~~~~~ 278 (296)
+....+....-.++....+...+.+.++.+|.+..+....|.+++.++++++++ ++++..||.+..+...|+.+.....
T Consensus 13 ~~~~~~~~~vPA~lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~-r~ls~~qW~aL~lL~~Gv~lv~~~~ 91 (244)
T PF04142_consen 13 SPKDTLKLAVPALLYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLK-RRLSRRQWLALFLLVAGVVLVQLSS 91 (244)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHH-cccchhhHHHHHHHHHHHheeecCC
Confidence 344455667777888888899999999999999999999999999999999998 5999999999999999999887654
Q ss_pred Hh
Q 022511 279 YQ 280 (296)
Q Consensus 279 ~~ 280 (296)
..
T Consensus 92 ~~ 93 (244)
T PF04142_consen 92 SQ 93 (244)
T ss_pred cc
Confidence 43
No 75
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=97.45 E-value=0.00059 Score=50.48 Aligned_cols=60 Identities=10% Similarity=0.065 Sum_probs=47.8
Q ss_pred HHHHHHHhccCh-hHHHHHhhhhHHHHHHhhheeeCCcccchhhHHHHHHHHHHhHHHHHHH
Q 022511 218 FTMFLCTIVNSA-LTTTIVGVLKGVGSTTLGFVVLGGVQVRALNVTGLLINTAGGVWYSYAK 278 (296)
Q Consensus 218 ~~~~~~~~~~sa-~~~s~~~~l~pi~~~~~~~~~~~e~~~t~~~~~G~~lil~g~~~~~~~~ 278 (296)
++...++|+.+- .-+++..-+..+.+.+.|+++||| ++|+.+++|+.++++|++..+...
T Consensus 45 ~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E-~~s~~~~~gi~lIi~GVi~l~l~~ 105 (120)
T PRK10452 45 IFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDE-SLSLMKIAGLTTLVAGIVLIKSGT 105 (120)
T ss_pred HHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHHHHHHhhcCC
Confidence 334456777765 445565667888999999999985 999999999999999999886654
No 76
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=97.37 E-value=7.3e-05 Score=61.19 Aligned_cols=217 Identities=14% Similarity=0.132 Sum_probs=146.1
Q ss_pred cccChhhhhHHHHHHHHHHHHHHHHhhhhcccchhHHH-HHHhhHHHHHHHHHHHhcCccCCccch----hhhhhhhhhh
Q 022511 44 KAIDLMTAKKLLPVSLFYNANVAFALASLKGVNIPMYI-AIKRLTPLAVLVAGFFSGKGKPTTQVT----LSVLLTATGC 118 (296)
Q Consensus 44 ~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~s~~~-~l~~~~pv~~~l~~~~~~~e~~~~~~~----~~i~l~~~Gv 118 (296)
+..+.+.+..-+..|.+.++.+..++.|.++..+|.+. +-...+.+-+.+++.+.++|..+..+. .++++.+.|+
T Consensus 52 p~~T~~~~iv~~isG~~Ws~GQ~~Qfka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~~IlG~iAliliviG~ 131 (288)
T COG4975 52 PELTLTIFIVGFISGAFWSFGQANQFKAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQIILGFIALILIVIGI 131 (288)
T ss_pred CccchhhHHHHHHhhhHhhhhhhhhhhheeeeeeeccccccchhhHhhceeeeEEEEeccCcchhHHHHHHHHHHHHHhh
Confidence 45556555666677778889999999999888777654 334577788899999999999987765 5677777888
Q ss_pred HhhhcCCc---c-cc----hhHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHhhhHHHHHHHHHHHhCCchhhh
Q 022511 119 VIAALGDF---S-FD----LSGYSMALTSVFFQTMYLVLVEKSGAEDGLSSVEIMFYNSFLSLPFLVFLIIVTGEFPGSL 190 (296)
Q Consensus 119 ~l~~~~~~---~-~~----~~G~~~~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 190 (296)
.+-+..|. + .+ -.|+...+.|.+.|..|.+..|.. +.|.+....-|..--....+.+....+| ...
T Consensus 132 ~lTs~~~~~nk~~~~~~n~kkgi~~L~iSt~GYv~yvvl~~~f----~v~g~saiLPqAiGMv~~ali~~~~~~~-~~~- 205 (288)
T COG4975 132 YLTSKQDRNNKEEENPSNLKKGIVILLISTLGYVGYVVLFQLF----DVDGLSAILPQAIGMVIGALILGFFKME-KRF- 205 (288)
T ss_pred eEeeeeccccccccChHhhhhheeeeeeeccceeeeEeeeccc----cccchhhhhHHHHHHHHHHHHHhhcccc-cch-
Confidence 77665442 1 11 368888889999999999988765 2466666655542222222222222211 111
Q ss_pred hhhhcccCchhHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHhhhhHHHHHHhhheeeCCcccchhh----HHHHHH
Q 022511 191 SLLFSKSNSFSFLVILILSLVMGIILNFTMFLCTIVNSALTTTIVGVLKGVGSTTLGFVVLGGVQVRALN----VTGLLI 266 (296)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~sa~~~s~~~~l~pi~~~~~~~~~~~e~~~t~~~----~~G~~l 266 (296)
....+.-+..|..-...+..++.+-++.+-.+.=.+..+.-+.+.+-|.++++| +=|..+ ++|+++
T Consensus 206 ---------~K~t~~nii~G~~Wa~GNl~ml~a~~~~GvAt~FSlSQlgViisTiGGIl~L~e-kKtkkEm~~v~iGiil 275 (288)
T COG4975 206 ---------NKYTWLNIIPGLIWAIGNLFMLLAAQKVGVATSFSLSQLGVIISTIGGILFLGE-KKTKKEMVYVIIGIIL 275 (288)
T ss_pred ---------HHHHHHHHhhHHHHHhhHHHHHHhhhhhceeeeeeHhhheeeeeecceEEEEec-cCchhhhhhhhhhHHH
Confidence 122344567777777778777777666665444445667778888899999996 766554 578888
Q ss_pred HHHHhHHHHH
Q 022511 267 NTAGGVWYSY 276 (296)
Q Consensus 267 il~g~~~~~~ 276 (296)
++.|..+...
T Consensus 276 ivvgai~lg~ 285 (288)
T COG4975 276 IVVGAILLGI 285 (288)
T ss_pred HHHHhhhhhe
Confidence 8888776544
No 77
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=97.27 E-value=0.0022 Score=53.00 Aligned_cols=99 Identities=11% Similarity=0.080 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHHHHHHhcCCccccccChhhhhHHHHHHHHH-HHHHHHHhhhhcccchhHHHHHHhhHHHHHHHHHHHhc
Q 022511 21 LTLQQLATALLIQAGRQMGYTKSKAIDLMTAKKLLPVSLFY-NANVAFALASLKGVNIPMYIAIKRLTPLAVLVAGFFSG 99 (296)
Q Consensus 21 ~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~al~~~~~s~~~~l~~~~pv~~~l~~~~~~ 99 (296)
+..-+.+++++..++.... -...-+++.....-+..+++. +.-..+...+++..|...+.++.++.|.+-++.+++++
T Consensus 180 ~a~gm~vAaviv~Pig~~~-ag~~l~~p~ll~laLgvavlSSalPYsLEmiAL~rlp~~~F~~LlSLePa~aAl~G~i~L 258 (292)
T COG5006 180 VAVGMLVAALIVLPIGAAQ-AGPALFSPSLLPLALGVAVLSSALPYSLEMIALRRLPARTFGTLLSLEPALAALSGLIFL 258 (292)
T ss_pred HHHHHHHHHHHHhhhhhhh-cchhhcChHHHHHHHHHHHHhcccchHHHHHHHhhCChhHHHHHHHhhHHHHHHHHHHHh
Confidence 3444555555555543321 112223444444444555554 36677788899999999999999999999999999999
Q ss_pred CccCCccchhhhhhhhhhhHh
Q 022511 100 KGKPTTQVTLSVLLTATGCVI 120 (296)
Q Consensus 100 ~e~~~~~~~~~i~l~~~Gv~l 120 (296)
+|+++..||+++...+.+.+=
T Consensus 259 ~e~ls~~qwlaI~~ViaAsaG 279 (292)
T COG5006 259 GETLTLIQWLAIAAVIAASAG 279 (292)
T ss_pred cCCCCHHHHHHHHHHHHHHhc
Confidence 999999999999999887764
No 78
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=97.19 E-value=0.0012 Score=46.73 Aligned_cols=60 Identities=18% Similarity=0.159 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHhhhhcccchhHHHHH-HhhHHHHHHHHHHHhcCccCCccchhhhhh
Q 022511 54 LLPVSLFYNANVAFALASLKGVNIPMYIAI-KRLTPLAVLVAGFFSGKGKPTTQVTLSVLL 113 (296)
Q Consensus 54 ~l~~~~~~~~~~~~~~~al~~~~~s~~~~l-~~~~pv~~~l~~~~~~~e~~~~~~~~~i~l 113 (296)
......++..+.++...+++++|.+.+-.+ .....+.+++.+.+++||+++..|+.++.+
T Consensus 32 ~~~~~~~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~l 92 (93)
T PF00893_consen 32 TILAVVGYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGL 92 (93)
T ss_dssp --HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheee
Confidence 334444788888999999999999998554 568999999999999999999999998875
No 79
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=97.09 E-value=0.0059 Score=51.69 Aligned_cols=81 Identities=17% Similarity=0.162 Sum_probs=61.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHh-hhhHHHHHHhhheeeCCcccchhhHH----HHHHHHHHhHHH
Q 022511 200 FSFLVILILSLVMGIILNFTMFLCTIVNSALTTTIVG-VLKGVGSTTLGFVVLGGVQVRALNVT----GLLINTAGGVWY 274 (296)
Q Consensus 200 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~sa~~~s~~~-~l~pi~~~~~~~~~~~e~~~t~~~~~----G~~lil~g~~~~ 274 (296)
...++.-+++|++-...+..++...++.+.+++-.+. -++-+.+.++|+++||| .-+..+++ +.+++++|+.+.
T Consensus 42 ~~~~~~~~lsG~~W~iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~gv~~fgE-W~~~~~~~~G~~Al~liiiGv~lt 120 (269)
T PF06800_consen 42 GTSFIVAFLSGAFWAIGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIGVLFFGE-WTTTTQKIIGFLALVLIIIGVILT 120 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcceeeeccchhHHHHHHHHHHHhhcCC-CCCcchHHHHHHHHHHHHHHHHHh
Confidence 3556677889999999999999998888876655554 45777789999999996 77755544 778888898887
Q ss_pred HHHHHhh
Q 022511 275 SYAKYQQ 281 (296)
Q Consensus 275 ~~~~~~~ 281 (296)
++.++++
T Consensus 121 s~~~~~~ 127 (269)
T PF06800_consen 121 SYQDKKS 127 (269)
T ss_pred ccccccc
Confidence 7655433
No 80
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=97.08 E-value=0.0034 Score=45.80 Aligned_cols=57 Identities=12% Similarity=0.103 Sum_probs=46.7
Q ss_pred HHHHHhccCh-hHHHHHhhhhHHHHHHhhheeeCCcccchhhHHHHHHHHHHhHHHHHH
Q 022511 220 MFLCTIVNSA-LTTTIVGVLKGVGSTTLGFVVLGGVQVRALNVTGLLINTAGGVWYSYA 277 (296)
Q Consensus 220 ~~~~~~~~sa-~~~s~~~~l~pi~~~~~~~~~~~e~~~t~~~~~G~~lil~g~~~~~~~ 277 (296)
...++++.+- ..+++..-+..+.+.+.|+++||| ++|+.+++|+.+++.|++..+..
T Consensus 47 l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e-~~~~~~~~gi~lIi~GVi~l~l~ 104 (110)
T PRK09541 47 LAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQ-RLDLPAIIGMMLICAGVLVINLL 104 (110)
T ss_pred HHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHHHHHHHhcC
Confidence 4456777765 455666667888999999999985 99999999999999999998654
No 81
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=97.04 E-value=0.0013 Score=57.11 Aligned_cols=120 Identities=20% Similarity=0.110 Sum_probs=82.8
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHhhhHHHHHHHHHHHhCCchhhhhhhhcccCchhHHHHHH
Q 022511 128 FDLSGYSMALTSVFFQTMYLVLVEKSGAEDGLSSVEIMFYNSFLSLPFLVFLIIVTGEFPGSLSLLFSKSNSFSFLVILI 207 (296)
Q Consensus 128 ~~~~G~~~~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (296)
....|..+++.++++.+...+++||-..+.+.++.+.. . +. .+...++.+|..+
T Consensus 4 ~~~iGv~lav~ss~~~~~g~~lqk~~~~r~~~~~~~~~--~----------------~~-------~~~l~~~~W~~G~- 57 (300)
T PF05653_consen 4 DFYIGVLLAVVSSIFIAVGFNLQKKSHLRLPRGSLRAG--S----------------GG-------RSYLRRPLWWIGL- 57 (300)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccc--c----------------hh-------hHHHhhHHHHHHH-
Confidence 34679999999999999999999986544211111000 0 00 0111122223333
Q ss_pred HHHHHHHHHHHHHHHHHhccChhHHHHHhhhhHHHHHHhhheeeCCcccchhhHHHHHHHHHHhHHHHHH
Q 022511 208 LSLVMGIILNFTMFLCTIVNSALTTTIVGVLKGVGSTTLGFVVLGGVQVRALNVTGLLINTAGGVWYSYA 277 (296)
Q Consensus 208 ~~g~~~~~~~~~~~~~~~~~sa~~~s~~~~l~pi~~~~~~~~~~~e~~~t~~~~~G~~lil~g~~~~~~~ 277 (296)
..-+.+. ...+.++...+++..+.++.+.-++..+++..++|| +++..++.|..+++.|..+....
T Consensus 58 ~~~~~g~---~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e-~~~~~~~~G~~l~i~G~~liv~~ 123 (300)
T PF05653_consen 58 LLMVLGE---ILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGE-KLTRRDIVGCALIILGSVLIVIF 123 (300)
T ss_pred HHHhcch---HHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcc-cchHhHHhhHHHHHhhheeeEEe
Confidence 2223333 345567788899999999999999999999999985 99999999999999998876543
No 82
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=96.99 E-value=3.9e-05 Score=63.45 Aligned_cols=134 Identities=16% Similarity=0.172 Sum_probs=89.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHhhhHHHHHHHHHHHhCCchhhhhhhhcccCchhHHHHHHHHH
Q 022511 131 SGYSMALTSVFFQTMYLVLVEKSGAEDGLSSVEIMFYNSFLSLPFLVFLIIVTGEFPGSLSLLFSKSNSFSFLVILILSL 210 (296)
Q Consensus 131 ~G~~~~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 210 (296)
.|..+.-++ .++....+..++.... +|.+......+.-.+...|..+.-.. + .. .+. .-..| +++-|
T Consensus 38 ~gl~l~~vs-~ff~~~~vv~t~~~e~---~p~e~a~~r~l~~mlit~pcliy~~~-~-v~---gp~--g~R~~--LiLRg 104 (346)
T KOG4510|consen 38 LGLLLLTVS-YFFNSCMVVSTKVLEN---DPMELASFRLLVRMLITYPCLIYYMQ-P-VI---GPE--GKRKW--LILRG 104 (346)
T ss_pred cCceehhhH-HHHhhHHHhhhhhhcc---ChhHhhhhhhhhehhhhheEEEEEee-e-ee---cCC--CcEEE--EEeeh
Confidence 677777777 6666667777776543 56655544422222222221111100 0 00 000 11112 34667
Q ss_pred HHHHHHHHHHHHHHhccChhHHHHHhhhhHHHHHHhhheeeCCcccchhhHHHHHHHHHHhHHHHHHH
Q 022511 211 VMGIILNFTMFLCTIVNSALTTTIVGVLKGVGSTTLGFVVLGGVQVRALNVTGLLINTAGGVWYSYAK 278 (296)
Q Consensus 211 ~~~~~~~~~~~~~~~~~sa~~~s~~~~l~pi~~~~~~~~~~~e~~~t~~~~~G~~lil~g~~~~~~~~ 278 (296)
+.++......+++.++.+-.-++++....|+++.+++|++++| +.|....+|..+.+.|+++..+..
T Consensus 105 ~mG~tgvmlmyya~~~mslaDA~vItFssPvft~ifaw~~LkE-~~t~~eaL~s~itl~GVVLIvRPp 171 (346)
T KOG4510|consen 105 FMGFTGVMLMYYALMYMSLADAVVITFSSPVFTIIFAWAFLKE-PFTKFEALGSLITLLGVVLIVRPP 171 (346)
T ss_pred hhhhhHHHHHHHHHhhcchhheEEEEecChHHHHHHHHHHHcC-CCcHHHHHHHHHhhheEEEEecCC
Confidence 7777777778888899999899999999999999999999995 999999999999999999987643
No 83
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=96.71 E-value=0.012 Score=42.27 Aligned_cols=57 Identities=18% Similarity=0.246 Sum_probs=48.1
Q ss_pred HHHHHhccCh-hHHHHHhhhhHHHHHHhhheeeCCcccchhhHHHHHHHHHHhHHHHHH
Q 022511 220 MFLCTIVNSA-LTTTIVGVLKGVGSTTLGFVVLGGVQVRALNVTGLLINTAGGVWYSYA 277 (296)
Q Consensus 220 ~~~~~~~~sa-~~~s~~~~l~pi~~~~~~~~~~~e~~~t~~~~~G~~lil~g~~~~~~~ 277 (296)
.-.++|+.+- +.+++..-...+.+.+.|+++||| +++..+++|..++++|++..+..
T Consensus 47 Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E-~l~~~~~~gl~LiiaGvi~Lk~~ 104 (106)
T COG2076 47 LSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGE-SLSLIKLLGLALILAGVIGLKLG 104 (106)
T ss_pred HHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCC-cCCHHHHHHHHHHHHHHHHhhhc
Confidence 3356777764 667888888999999999999985 99999999999999999987653
No 84
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=96.65 E-value=0.017 Score=42.02 Aligned_cols=57 Identities=14% Similarity=0.166 Sum_probs=47.3
Q ss_pred HHHHHHHhccCh-hHHHHHhhhhHHHHHHhhheeeCCcccchhhHHHHHHHHHHhHHHH
Q 022511 218 FTMFLCTIVNSA-LTTTIVGVLKGVGSTTLGFVVLGGVQVRALNVTGLLINTAGGVWYS 275 (296)
Q Consensus 218 ~~~~~~~~~~sa-~~~s~~~~l~pi~~~~~~~~~~~e~~~t~~~~~G~~lil~g~~~~~ 275 (296)
++...+.|+.+. ..+++..-+..+.+.+.|+++||| ++|+.+++|+.+++.|++..+
T Consensus 50 ~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e-~~~~~~~~gi~lIi~GVi~lk 107 (109)
T PRK10650 50 SALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQ-RLNRKGWIGLVLLLAGMVMIK 107 (109)
T ss_pred HHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHHHHhc
Confidence 334456777765 667777888899999999999985 999999999999999998753
No 85
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=96.59 E-value=0.087 Score=45.97 Aligned_cols=142 Identities=15% Similarity=0.111 Sum_probs=94.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhcc--CCCCCHHHHHHHHhhhHHHHHHHHHHHhCCc--hhhhhhhh-cccCchhHHHHHHH
Q 022511 134 SMALTSVFFQTMYLVLVEKSGA--EDGLSSVEIMFYNSFLSLPFLVFLIIVTGEF--PGSLSLLF-SKSNSFSFLVILIL 208 (296)
Q Consensus 134 ~~~l~s~~~~a~~~v~~k~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~ 208 (296)
...+...+..+......|...+ +.+..+.+..+-.-++-.++........... ....+... ..+..+.....+..
T Consensus 18 ~~l~~~t~~~~~l~l~l~ys~~~~~~~f~~tt~v~~~Ei~Kl~~c~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~lk~~v 97 (345)
T KOG2234|consen 18 LSLIVLTAQNTALTLLLRYSRTREKPMFLPTTAVFLTEVIKLVFCLFLLLFEERKYAKKSLKSLSKEILAAPRETLKVSV 97 (345)
T ss_pred HHHHHHHHHHhhHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhcCHHHHhChHHHHHHHH
Confidence 3344444555555555554332 2346777777777766666655555543211 01111111 11123323445555
Q ss_pred HHHHHHHHHHHHHHHHhccChhHHHHHhhhhHHHHHHhhheeeCCcccchhhHHHHHHHHHHhHHHHH
Q 022511 209 SLVMGIILNFTMFLCTIVNSALTTTIVGVLKGVGSTTLGFVVLGGVQVRALNVTGLLINTAGGVWYSY 276 (296)
Q Consensus 209 ~g~~~~~~~~~~~~~~~~~sa~~~s~~~~l~pi~~~~~~~~~~~e~~~t~~~~~G~~lil~g~~~~~~ 276 (296)
-..+....+...+....+.+|.++++...+|...+.++++++++ ++++..||....+..+|+...+.
T Consensus 98 Pa~iYalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~-rkLs~~Qw~Al~lL~~Gv~~vQ~ 164 (345)
T KOG2234|consen 98 PALIYALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILR-RKLSRLQWMALVLLFAGVALVQL 164 (345)
T ss_pred HHHHHHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHHHHHhc
Confidence 66667777788888999999999999999999999999999998 59999999999999999988873
No 86
>PRK11431 multidrug efflux system protein; Provisional
Probab=96.59 E-value=0.016 Score=41.91 Aligned_cols=58 Identities=16% Similarity=0.152 Sum_probs=48.5
Q ss_pred HHHHHHHhccCh-hHHHHHhhhhHHHHHHhhheeeCCcccchhhHHHHHHHHHHhHHHHH
Q 022511 218 FTMFLCTIVNSA-LTTTIVGVLKGVGSTTLGFVVLGGVQVRALNVTGLLINTAGGVWYSY 276 (296)
Q Consensus 218 ~~~~~~~~~~sa-~~~s~~~~l~pi~~~~~~~~~~~e~~~t~~~~~G~~lil~g~~~~~~ 276 (296)
++...+.|+.+- ..+++..-+..+.+.+.|+++||| ++|+.+++|+.+++.|++..+.
T Consensus 44 ~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e-~~~~~~~~gi~lIi~GVv~l~l 102 (105)
T PRK11431 44 ALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGE-SASPARLLSLALIVAGIIGLKL 102 (105)
T ss_pred HHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHHHHHhhhc
Confidence 334456777764 667888888999999999999995 9999999999999999988753
No 87
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=96.52 E-value=0.0045 Score=52.05 Aligned_cols=133 Identities=17% Similarity=0.156 Sum_probs=81.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHhhhHHHHHHHHHHHhCCchhhhhhhhcccCchhHHHHHHHHHH
Q 022511 132 GYSMALTSVFFQTMYLVLVEKSGAEDGLSSVEIMFYNSFLSLPFLVFLIIVTGEFPGSLSLLFSKSNSFSFLVILILSLV 211 (296)
Q Consensus 132 G~~~~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 211 (296)
|++.+++|+++++...+=.||.-. .|++-.+.+......+......+..+. +. +...-++.|.
T Consensus 1 G~~a~~va~~~fGs~~vPvK~~~~---gDg~~fQw~~~~~i~~~g~~v~~~~~~-p~-------------f~p~amlgG~ 63 (254)
T PF07857_consen 1 GYIACIVAVLFFGSNFVPVKKFDT---GDGFFFQWVMCSGIFLVGLVVNLILGF-PP-------------FYPWAMLGGA 63 (254)
T ss_pred CchhHHHHHHHhcccceeeEeccC---CCcHHHHHHHHHHHHHHHHHHHHhcCC-Cc-------------ceeHHHhhhh
Confidence 677889999999999998887633 277777766665554444444444322 21 1223345555
Q ss_pred HHHHHHHHHHHHHhccCh-hHHHHHhhhhHHHHHHhhhe-eeCCc----ccchhhHHHHHHHHHHhHHHHHHHHhh
Q 022511 212 MGIILNFTMFLCTIVNSA-LTTTIVGVLKGVGSTTLGFV-VLGGV----QVRALNVTGLLINTAGGVWYSYAKYQQ 281 (296)
Q Consensus 212 ~~~~~~~~~~~~~~~~sa-~~~s~~~~l~pi~~~~~~~~-~~~e~----~~t~~~~~G~~lil~g~~~~~~~~~~~ 281 (296)
+-...+.+..-.+|..+- .-..+-+..+-+..-..|-+ +||.+ .-++++++|.+++++|..++...|.++
T Consensus 64 lW~~gN~~~vpii~~iGLglg~liW~s~n~l~Gw~~grfGlFg~~~~~~~~~~Ln~~G~~l~~~~~~~f~fik~~~ 139 (254)
T PF07857_consen 64 LWATGNILVVPIIKTIGLGLGMLIWGSVNCLTGWASGRFGLFGLDPQVPSSPWLNYIGVALVLVSGIIFSFIKSEE 139 (254)
T ss_pred hhhcCceeehhHhhhhhhHHHHHHHHHHHHHHHHHHhhceeccccccccchhHHHHHHHHHHHHHHHheeeecCCC
Confidence 555555555555666553 33334444455555555432 55432 235889999999999999998766544
No 88
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.35 E-value=0.14 Score=39.28 Aligned_cols=138 Identities=13% Similarity=0.077 Sum_probs=89.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHhhhHHHHHHHHHHHhCCchhhhhhhhcccCchhHHHHHHHH
Q 022511 130 LSGYSMALTSVFFQTMYLVLVEKSGAEDGLSSVEIMFYNSFLSLPFLVFLIIVTGEFPGSLSLLFSKSNSFSFLVILILS 209 (296)
Q Consensus 130 ~~G~~~~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (296)
.......+.+.++...+.-++-++.+..+ +|....+.+...++..+..+....+..++.. ...+.+ || ..+.
T Consensus 4 ~l~ll~~i~aG~~l~~Q~~iN~qL~~~~~-spl~As~isf~vGt~~L~~l~l~~~~~~~~a-----~~~~~p-wW-~~~G 75 (150)
T COG3238 4 YLYLLFAILAGALLPLQAAINGRLARYLG-SPLLASLISFLVGTVLLLILLLIKQGHPGLA-----AVASAP-WW-AWIG 75 (150)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHcC-ChHHHHHHHHHHHHHHHHHHHHHhcCCCchh-----hccCCc-hH-HHHc
Confidence 35567888899999999988888876553 6888888888888888777776643333221 111112 22 2344
Q ss_pred HHHHHHHHHHHHHHHhccChhHHHHHhhh-hHHHHHHhhheeeC---CcccchhhHHHHHHHHHHhHHHH
Q 022511 210 LVMGIILNFTMFLCTIVNSALTTTIVGVL-KGVGSTTLGFVVLG---GVQVRALNVTGLLINTAGGVWYS 275 (296)
Q Consensus 210 g~~~~~~~~~~~~~~~~~sa~~~s~~~~l-~pi~~~~~~~~~~~---e~~~t~~~~~G~~lil~g~~~~~ 275 (296)
|.++...-........+.+++++..+... +-+.+.+++-+=+. ..+++...++|+.++++|+.+.+
T Consensus 76 G~lGa~~vt~s~~l~p~lGa~~t~~l~i~gQli~glliD~fG~~g~~~~~~~~~r~lgi~L~l~gil~~~ 145 (150)
T COG3238 76 GLLGAIFVTSSILLAPRLGAATTIALVIAGQLIMGLLIDHFGWFGVPKRPLNLPRILGILLVLAGILLAR 145 (150)
T ss_pred cchhhhhhhhhHHhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCHHHHHHHHHHHHHHHHhc
Confidence 56665555555566777777655544444 55666666654333 12789999999999999955543
No 89
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=96.19 E-value=0.062 Score=41.01 Aligned_cols=113 Identities=10% Similarity=-0.017 Sum_probs=75.6
Q ss_pred eHHHHhcCCCchHHHHHHHHHHHHHHHHHHhcCCc-cccccChhhhhHHHHHHHHHHHHHHHHhhhhcccchhHHHHHHh
Q 022511 7 NKAVIMQYAHSMTLLTLQQLATALLIQAGRQMGYT-KSKAIDLMTAKKLLPVSLFYNANVAFALASLKGVNIPMYIAIKR 85 (296)
Q Consensus 7 nK~~l~~~~~p~~l~~~r~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~s~~~~l~~ 85 (296)
|-.+-+..+.|..=++.-+.++.+.+..+....+. +.++.+... +..+..|++.+....+...+.+.+.++....+.-
T Consensus 20 N~~L~~~~gs~~~as~i~~~~G~i~~~i~~~~~~~~~~~~~~~~p-~w~~lGG~lG~~~V~~~~~~vp~lG~~~~~~l~~ 98 (138)
T PF04657_consen 20 NGQLGKALGSPLVASFISFGVGFILLLIILLITGRPSLASLSSVP-WWAYLGGLLGVFFVLSNIILVPRLGAALTTILIV 98 (138)
T ss_pred HHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHhcccccchhccCC-hHHhccHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 33333445567776677777766665555443222 222222211 3444478888899999999999998887776554
Q ss_pred -hHHHHHHHHHHH----hcCccCCccchhhhhhhhhhhHh
Q 022511 86 -LTPLAVLVAGFF----SGKGKPTTQVTLSVLLTATGCVI 120 (296)
Q Consensus 86 -~~pv~~~l~~~~----~~~e~~~~~~~~~i~l~~~Gv~l 120 (296)
.+-+...+++.+ .-|+++++.|..++.+.++|+.+
T Consensus 99 ~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~L 138 (138)
T PF04657_consen 99 AGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVIL 138 (138)
T ss_pred HHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHhC
Confidence 566666777765 35789999999999999999864
No 90
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=95.60 E-value=0.026 Score=41.17 Aligned_cols=62 Identities=13% Similarity=0.265 Sum_probs=52.2
Q ss_pred HHHHHHHHHhhhhcccchhHHHHH-HhhHHHHHHHHHHHhcCccCCccchhhhhhhhhhhHhh
Q 022511 60 FYNANVAFALASLKGVNIPMYIAI-KRLTPLAVLVAGFFSGKGKPTTQVTLSVLLTATGCVIA 121 (296)
Q Consensus 60 ~~~~~~~~~~~al~~~~~s~~~~l-~~~~pv~~~l~~~~~~~e~~~~~~~~~i~l~~~Gv~l~ 121 (296)
++-.+...+++.+...+.|.+.-+ ++++-+++++.++++.+|..+++++.++.+.+.|+.+.
T Consensus 50 lNq~GSv~f~~~L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~Lc 112 (113)
T PF10639_consen 50 LNQSGSVLFFLLLGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVALC 112 (113)
T ss_pred HHHHHHHHHHHHHhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCeeee
Confidence 455666677888999999888877 58999999999988888888999999999999998763
No 91
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=94.93 E-value=0.074 Score=37.56 Aligned_cols=54 Identities=19% Similarity=0.144 Sum_probs=29.2
Q ss_pred HHHHH-HHHHHHHhccChhH-HHHHhhhhHHHHHHhhheeeCCcccchhhHHHHHHH
Q 022511 213 GIILN-FTMFLCTIVNSALT-TTIVGVLKGVGSTTLGFVVLGGVQVRALNVTGLLIN 267 (296)
Q Consensus 213 ~~~~~-~~~~~~~~~~sa~~-~s~~~~l~pi~~~~~~~~~~~e~~~t~~~~~G~~li 267 (296)
.+..+ ++...+.|+.+... +.+..-+..+.+.+.|+.+||| ++|..+++|+.++
T Consensus 38 ~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E-~~s~~~~~gi~lI 93 (93)
T PF00893_consen 38 GYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGE-SLSLSKWLGIGLI 93 (93)
T ss_dssp HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH---------HHHHHHH
T ss_pred HHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCC-CCCHHHHhheeeC
Confidence 33334 44456778877644 4666678889999999999985 9999999999875
No 92
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=94.48 E-value=0.065 Score=44.34 Aligned_cols=130 Identities=11% Similarity=0.111 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHhhhHHHHHHHHHHHhCCchhhhhhhhcccCchhHHHHHHHHHH
Q 022511 132 GYSMALTSVFFQTMYLVLVEKSGAEDGLSSVEIMFYNSFLSLPFLVFLIIVTGEFPGSLSLLFSKSNSFSFLVILILSLV 211 (296)
Q Consensus 132 G~~~~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 211 (296)
+++.+++=++.|+.......|... +|.+-+.-+.+ +++......++. ..|.. +...+..-+.+|.
T Consensus 3 ~~liaL~P~l~WGsip~v~~k~GG----~p~qQ~lGtT~-GALifaiiv~~~-~~p~~---------T~~~~iv~~isG~ 67 (288)
T COG4975 3 DLLIALLPALGWGSIPLVANKFGG----KPYQQTLGTTL-GALIFAIIVFLF-VSPEL---------TLTIFIVGFISGA 67 (288)
T ss_pred hHHHHHHHHHHhcccceeeeecCC----ChhHhhhhccH-HHHHHHHHHhee-ecCcc---------chhhHHHHHHhhh
Confidence 567788888889888777666532 44444433333 333333333222 11111 3444556678888
Q ss_pred HHHHHHHHHHHHHhccChhHHHHHh-hhhHHHHHHhhheeeCCcccchhhHH----HHHHHHHHhHHHHHH
Q 022511 212 MGIILNFTMFLCTIVNSALTTTIVG-VLKGVGSTTLGFVVLGGVQVRALNVT----GLLINTAGGVWYSYA 277 (296)
Q Consensus 212 ~~~~~~~~~~~~~~~~sa~~~s~~~-~l~pi~~~~~~~~~~~e~~~t~~~~~----G~~lil~g~~~~~~~ 277 (296)
+-...+..++++.+..+.+.+..+. -.+-+-+.++|++.||| ..+..+++ ..++++.|..+.++.
T Consensus 68 ~Ws~GQ~~Qfka~~~iGVSkamPiStG~QLVg~sL~gV~~f~E-W~t~~~~IlG~iAliliviG~~lTs~~ 137 (288)
T COG4975 68 FWSFGQANQFKAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHE-WTTPTQIILGFIALILIVIGIYLTSKQ 137 (288)
T ss_pred HhhhhhhhhhhheeeeeeeccccccchhhHhhceeeeEEEEec-cCcchhHHHHHHHHHHHHHhheEeeee
Confidence 8888888888888776655554433 34778889999999995 88876653 455666676665543
No 93
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=94.29 E-value=0.053 Score=47.53 Aligned_cols=79 Identities=13% Similarity=0.082 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHhhhhHHHHHHhhheeeCCcccchhhHHHHHHHHHHhHHHHHHHHhh
Q 022511 202 FLVILILSLVMGIILNFTMFLCTIVNSALTTTIVGVLKGVGSTTLGFVVLGGVQVRALNVTGLLINTAGGVWYSYAKYQQ 281 (296)
Q Consensus 202 ~~~~~~~~g~~~~~~~~~~~~~~~~~sa~~~s~~~~l~pi~~~~~~~~~~~e~~~t~~~~~G~~lil~g~~~~~~~~~~~ 281 (296)
....-++.|.+-+..++....+++.++....+++....-.++..+|.++.+| ++|....++..+.++|+++....+.++
T Consensus 158 ~ak~sl~fc~lWF~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e-~ft~sKllav~~si~GViiVt~~~s~~ 236 (416)
T KOG2765|consen 158 TAKLSLFFCPLWFLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVE-RFTLSKLLAVFVSIAGVIIVTMGDSKQ 236 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcc-hhhHHHHHHHHHhhccEEEEEeccccc
Confidence 3445677888999999999999999999999999999999999999998875 999999999999999999988765443
No 94
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=94.25 E-value=0.098 Score=43.34 Aligned_cols=67 Identities=10% Similarity=0.004 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHHHHhhhhcccchhHHHHHHhhHHHHHHHHHHHhcCccCCccchhhhhhhhhhhHh
Q 022511 54 LLPVSLFYNANVAFALASLKGVNIPMYIAIKRLTPLAVLVAGFFSGKGKPTTQVTLSVLLTATGCVI 120 (296)
Q Consensus 54 ~l~~~~~~~~~~~~~~~al~~~~~s~~~~l~~~~pv~~~l~~~~~~~e~~~~~~~~~i~l~~~Gv~l 120 (296)
.+...+..+....+....+++.+.....+...+.++++.+++.++++|+++..++.++.+.+.|+.+
T Consensus 155 ~~~~~~~~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~l 221 (222)
T TIGR00803 155 VWIVGLLNVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATFL 221 (222)
T ss_pred HHHHHHHHHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeEe
Confidence 3344455666666778889999999999999999999999999999999999999999999988754
No 95
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=94.13 E-value=0.098 Score=44.66 Aligned_cols=75 Identities=12% Similarity=0.065 Sum_probs=66.4
Q ss_pred cChhhhhHHHHHHHHHHHHHHHHhhhhcccchhHHHHHHhhHHHHHHHHHHHhcCccCCccchhhhhhhhhhhHh
Q 022511 46 IDLMTAKKLLPVSLFYNANVAFALASLKGVNIPMYIAIKRLTPLAVLVAGFFSGKGKPTTQVTLSVLLTATGCVI 120 (296)
Q Consensus 46 ~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~s~~~~l~~~~pv~~~l~~~~~~~e~~~~~~~~~i~l~~~Gv~l 120 (296)
..++.+++++..+.+.+.++.+.++-++.-.+-..+.+..+.=++..+++.++++++++..+|.++...+.|..+
T Consensus 236 ~hp~~~~Di~l~s~~gavGQ~FI~~TI~~FGslt~t~I~ttRk~~si~lS~i~f~h~~s~~q~~g~~iVFg~i~l 310 (327)
T KOG1581|consen 236 EHPDVAFDILLYSTCGAVGQLFIFYTIERFGSLTFTTIMTTRKMVSIMLSCIVFGHPLSSEQWLGVLIVFGGIFL 310 (327)
T ss_pred cChhHHHHHHHHHHhhhhhhheehhhHhhcccHHHHHHHHHHHHHHHHHHHHHhCCccchhhccCeeeehHHHHH
Confidence 345677899999999999999998888877777778888899999999999999999999999999999999876
No 96
>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family. This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane
Probab=93.08 E-value=3.9 Score=35.89 Aligned_cols=141 Identities=18% Similarity=0.072 Sum_probs=72.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHH-HHhhhHHHHHHHHHHH--hCCchhhhhhhhcccCchhHHHHH
Q 022511 130 LSGYSMALTSVFFQTMYLVLVEKSGAEDGLSSVEIMF-YNSFLSLPFLVFLIIV--TGEFPGSLSLLFSKSNSFSFLVIL 206 (296)
Q Consensus 130 ~~G~~~~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 206 (296)
..|+++..+++++.+.+.+=.||. |+- +||... .+.+++-++..+.... .+|..+... .. +...+...
T Consensus 6 i~Gii~h~iGg~~~~sfy~P~kkv-k~W---sWEs~Wlv~gi~swli~P~~~a~l~ip~~~~i~~---~~--~~~~l~~~ 76 (344)
T PF06379_consen 6 ILGIIFHAIGGFASGSFYVPFKKV-KGW---SWESYWLVQGIFSWLIVPWLWALLAIPDFFSIYS---AT--PASTLFWT 76 (344)
T ss_pred HHHHHHHHHHHHHhhhhccchhhc-CCc---cHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHH---hC--ChhHHHHH
Confidence 479999999999999999998887 332 333332 3334443333332222 233333322 11 22233334
Q ss_pred HHHHHHHHHHHHHHHHHHhccCh-hHHHHHhhhhHHHHHHhhhee-------eCCcccchhhHHHHHHHHHHhHHHHHHH
Q 022511 207 ILSLVMGIILNFTMFLCTIVNSA-LTTTIVGVLKGVGSTTLGFVV-------LGGVQVRALNVTGLLINTAGGVWYSYAK 278 (296)
Q Consensus 207 ~~~g~~~~~~~~~~~~~~~~~sa-~~~s~~~~l~pi~~~~~~~~~-------~~e~~~t~~~~~G~~lil~g~~~~~~~~ 278 (296)
.+.|++--..+...-..+|+.+- ...++.--+..++..++--++ ++ ++-...-++|.+++++|+....+.-
T Consensus 77 ~l~G~lWGIGgltfGl~mryLGvSLG~sI~lGl~~~~GTlippi~~g~~~~l~~-~~~g~~vL~Gv~v~LiGIai~g~AG 155 (344)
T PF06379_consen 77 FLFGVLWGIGGLTFGLAMRYLGVSLGQSIALGLCAVFGTLIPPIFQGTFDELLA-TPSGQIVLLGVAVCLIGIAICGKAG 155 (344)
T ss_pred HHHHHHHhcchhhHhHHHHHHhHHHHHHHHHHHHHHHhhchHHHHcCccccccc-CCCchhhhhHHHHHHHHHHHHhHHH
Confidence 44444433333333344555542 223332222222222221111 22 1334578899999999999987754
Q ss_pred Hh
Q 022511 279 YQ 280 (296)
Q Consensus 279 ~~ 280 (296)
..
T Consensus 156 ~~ 157 (344)
T PF06379_consen 156 SM 157 (344)
T ss_pred Hh
Confidence 33
No 97
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.55 E-value=1.9 Score=33.22 Aligned_cols=114 Identities=12% Similarity=0.022 Sum_probs=68.0
Q ss_pred eHHHHhcCCCchHHHHHHHHHHHHHHHHHHhcCCccccccC--hhhhhHHHHHHHHHHHHHHHHhhhhcccchhHHH-HH
Q 022511 7 NKAVIMQYAHSMTLLTLQQLATALLIQAGRQMGYTKSKAID--LMTAKKLLPVSLFYNANVAFALASLKGVNIPMYI-AI 83 (296)
Q Consensus 7 nK~~l~~~~~p~~l~~~r~~~~~~~l~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~~~~al~~~~~s~~~-~l 83 (296)
|-.+-+..+.|..=.+..+.++..++..+...+. +++... ++..+..+..|++.+.....+......+.++..+ +.
T Consensus 24 N~qL~~~~~spl~As~isf~vGt~~L~~l~l~~~-~~~~~a~~~~~pwW~~~GG~lGa~~vt~s~~l~p~lGa~~t~~l~ 102 (150)
T COG3238 24 NGRLARYLGSPLLASLISFLVGTVLLLILLLIKQ-GHPGLAAVASAPWWAWIGGLLGAIFVTSSILLAPRLGAATTIALV 102 (150)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHhc-CCCchhhccCCchHHHHccchhhhhhhhhHHhccchhHHHHHHHH
Confidence 3334444566777777777776666665554422 222221 2222334444555556665555666666555444 45
Q ss_pred HhhHHHHHHHHHHHhc----CccCCccchhhhhhhhhhhHhh
Q 022511 84 KRLTPLAVLVAGFFSG----KGKPTTQVTLSVLLTATGCVIA 121 (296)
Q Consensus 84 ~~~~pv~~~l~~~~~~----~e~~~~~~~~~i~l~~~Gv~l~ 121 (296)
...+-+.-++++.+=+ +++++..++.++++.++|+.+.
T Consensus 103 i~gQli~glliD~fG~~g~~~~~~~~~r~lgi~L~l~gil~~ 144 (150)
T COG3238 103 IAGQLIMGLLIDHFGWFGVPKRPLNLPRILGILLVLAGILLA 144 (150)
T ss_pred HHHHHHHHHHHHhhcccCCCcCCCCHHHHHHHHHHHHHHHHh
Confidence 5566666677765433 4888999999999999995543
No 98
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=91.85 E-value=5 Score=34.81 Aligned_cols=136 Identities=12% Similarity=-0.002 Sum_probs=91.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhccCCCCCH-HHHHHHHhhhHHHHHHHHHHHhC-CchhhhhhhhcccCchhHHHHHHH
Q 022511 131 SGYSMALTSVFFQTMYLVLVEKSGAEDGLSS-VEIMFYNSFLSLPFLVFLIIVTG-EFPGSLSLLFSKSNSFSFLVILIL 208 (296)
Q Consensus 131 ~G~~~~l~s~~~~a~~~v~~k~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 208 (296)
.....++..+++..+-.+..|.....++.+. ..+..+|++.+.+.+...-..-- +..+. ++....-|. -
T Consensus 12 ~~l~sa~~Y~~sS~lm~vvNK~vls~y~f~~~l~l~~~Q~l~s~~~v~~lk~~~lv~~~~l------~~~~~kk~~---P 82 (314)
T KOG1444|consen 12 SPLLSALFYCLSSILMTVVNKIVLSSYNFPMGLLLMLLQSLASVLVVLVLKRLGLVNFRPL------DLRTAKKWF---P 82 (314)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHhceeecCCc------ChHHHHHHc---c
Confidence 3467777788888888888888887776444 33445888887777665433210 11111 111122221 1
Q ss_pred HHHHHHHHHHHHHHHHhccChhHHHHHhhhhHHHHHHhhheeeCCcccchhhHHHHHHHHHHhHHHHH
Q 022511 209 SLVMGIILNFTMFLCTIVNSALTTTIVGVLKGVGSTTLGFVVLGGVQVRALNVTGLLINTAGGVWYSY 276 (296)
Q Consensus 209 ~g~~~~~~~~~~~~~~~~~sa~~~s~~~~l~pi~~~~~~~~~~~e~~~t~~~~~G~~lil~g~~~~~~ 276 (296)
..++-++..+......++.+-....++..+.|+.+.+....++| .+++...+.....+++|...+..
T Consensus 83 ~~~lf~~~i~t~~~slk~lnVpm~tv~kn~tii~~ai~E~lf~~-~~~~~~v~~Sv~~m~~~s~~~~~ 149 (314)
T KOG1444|consen 83 VSLLFVGMLFTGSKSLKYLNVPMFTVFKNLTIILTAIGEVLFFG-KRPSNKVWASVFAMIIGSVAAAF 149 (314)
T ss_pred HHHHHHHHHHHccccccccCchHHHHHhhchHHHHHHhHHhhcC-cCchhhHHHHHHHHHHHHHhhcc
Confidence 12222333344556789999999999999999999999999998 59999999999999998777653
No 99
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=91.17 E-value=0.062 Score=45.16 Aligned_cols=98 Identities=9% Similarity=0.016 Sum_probs=0.0
Q ss_pred hcccchhHHHHHHhhHHHHHHHHHH-HhcCcc-CCccchhhhhhhhhhhHhhhcCCc--ccchhHHHHHHHHHHHHHHHH
Q 022511 72 LKGVNIPMYIAIKRLTPLAVLVAGF-FSGKGK-PTTQVTLSVLLTATGCVIAALGDF--SFDLSGYSMALTSVFFQTMYL 147 (296)
Q Consensus 72 l~~~~~s~~~~l~~~~pv~~~l~~~-~~~~e~-~~~~~~~~i~l~~~Gv~l~~~~~~--~~~~~G~~~~l~s~~~~a~~~ 147 (296)
++-.+-+..+++.+.+.+.+.++-. .++||| .-..-.+|+++.++-..+...-.. +.-+.|+++.+++....-.-+
T Consensus 44 msd~t~~a~~vl~sfAvvliiIIiIImlF~RrLLCPLGlLCiilimi~lLv~~L~tLtGQ~LF~Gi~~l~l~~lLaL~vW 123 (381)
T PF05297_consen 44 MSDLTQGALTVLYSFAVVLIIIIIIIMLFKRRLLCPLGLLCIILIMIVLLVSMLWTLTGQTLFVGIVILFLCCLLALGVW 123 (381)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HhccccchHHHHHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555666655554444433 333544 456777788877766655443322 223467766665555444444
Q ss_pred HHHHHhccCCCCCHHHHHHHHhh
Q 022511 148 VLVEKSGAEDGLSSVEIMFYNSF 170 (296)
Q Consensus 148 v~~k~~~~~~~~~~~~~~~~~~~ 170 (296)
.| -.+.++++.+-|++..+...
T Consensus 124 ~Y-m~lLr~~GAs~WtiLaFcLA 145 (381)
T PF05297_consen 124 FY-MWLLRELGASFWTILAFCLA 145 (381)
T ss_dssp -----------------------
T ss_pred HH-HHHHHHhhhHHHHHHHHHHH
Confidence 44 34667788888888866543
No 100
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=90.23 E-value=0.13 Score=41.05 Aligned_cols=63 Identities=19% Similarity=0.212 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHhccChhHHHHHhhhhHHHHHHhhheeeCCcccchhhHHHHHHHHHHhHHHHHH
Q 022511 214 IILNFTMFLCTIVNSALTTTIVGVLKGVGSTTLGFVVLGGVQVRALNVTGLLINTAGGVWYSYA 277 (296)
Q Consensus 214 ~~~~~~~~~~~~~~sa~~~s~~~~l~pi~~~~~~~~~~~e~~~t~~~~~G~~lil~g~~~~~~~ 277 (296)
.+.++.+..++++.+|+.++-+..-+..+..+++++++|| ++....++..++.+.|+++.++.
T Consensus 64 t~aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D-~~~~~kIlaailAI~GiVmiay~ 126 (290)
T KOG4314|consen 64 TGANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGD-RFMGFKILAAILAIGGIVMIAYA 126 (290)
T ss_pred ecCCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhcc-chhhhhHHHHHHHhCcEEEEEec
Confidence 4456777888999999999999999999999999999997 99999999999999998887654
No 101
>PF11044 TMEMspv1-c74-12: Plectrovirus spv1-c74 ORF 12 transmembrane protein; InterPro: IPR022743 This is a group of proteins expressed by Plectroviruses. The Plectroviruses are single-stranded DNA viruses belonging to the Inoviridae. This entry represents putative transmembrane proteins of unknown function.
Probab=89.96 E-value=0.53 Score=27.55 Aligned_cols=39 Identities=21% Similarity=-0.024 Sum_probs=18.1
Q ss_pred cchhhHHHHHHHHHHh------HHHHHHHHhhhhccCCcchHhhh
Q 022511 256 VRALNVTGLLINTAGG------VWYSYAKYQQKKKKLPKSDVEAY 294 (296)
Q Consensus 256 ~t~~~~~G~~lil~g~------~~~~~~~~~~~~~~~~~~~~~~~ 294 (296)
++|..++=.+++++|+ ..|...++.+.+++++++.++++
T Consensus 2 p~wlt~iFsvvIil~If~~iGl~IyQkikqIrgKkk~KKeie~ke 46 (49)
T PF11044_consen 2 PTWLTTIFSVVIILGIFAWIGLSIYQKIKQIRGKKKEKKEIERKE 46 (49)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHh
Confidence 3455555555555554 44444444444444444444443
No 102
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=89.83 E-value=0.33 Score=39.98 Aligned_cols=73 Identities=5% Similarity=-0.023 Sum_probs=63.1
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhhcccchhHHHHHHhhHHHHHHHHHHHhcCccCCccchhhhhhhhhhhHhhh
Q 022511 50 TAKKLLPVSLFYNANVAFALASLKGVNIPMYIAIKRLTPLAVLVAGFFSGKGKPTTQVTLSVLLTATGCVIAA 122 (296)
Q Consensus 50 ~~~~~l~~~~~~~~~~~~~~~al~~~~~s~~~~l~~~~pv~~~l~~~~~~~e~~~~~~~~~i~l~~~Gv~l~~ 122 (296)
.++.+...++..++.+++.+.-..+-++-.-++...+.-.|+.+.+.++++.+++.+||++.++.+.|...-.
T Consensus 240 ~~~~l~l~ai~s~LGQ~fIF~tv~~FgPLtCSivTTTRKfFTil~SVllf~npls~rQwlgtvlVF~aL~~D~ 312 (337)
T KOG1580|consen 240 VFWDLTLLAIASCLGQWFIFKTVEEFGPLTCSIVTTTRKFFTILISVLLFNNPLSGRQWLGTVLVFSALTADV 312 (337)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHhCCeeEEEEeehHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhhhHh
Confidence 3467778888888889888888887777777888889999999999999999999999999999999887644
No 103
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.79 E-value=0.052 Score=46.66 Aligned_cols=125 Identities=18% Similarity=0.217 Sum_probs=85.1
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHhhhHHHHHHHHHHHhCCchhhhhhhhcccCchhHHHHHH
Q 022511 128 FDLSGYSMALTSVFFQTMYLVLVEKSGAEDGLSSVEIMFYNSFLSLPFLVFLIIVTGEFPGSLSLLFSKSNSFSFLVILI 207 (296)
Q Consensus 128 ~~~~G~~~~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (296)
.+..|.++++.|.+..+...+..||..++.+... .-+ -.|+. ++... ..||.-+
T Consensus 18 d~~~G~~LaissS~~Ig~sfilkKkgl~r~~~~~---~ra--------------~~gg~--------~yl~~-~~Ww~G~ 71 (335)
T KOG2922|consen 18 DNIIGLVLAISSSIFIGSSFILKKKGLKRAGASG---LRA--------------GEGGY--------GYLKE-PLWWAGM 71 (335)
T ss_pred CceeeeeehhhccEEEeeehhhhHHHHHHHhhhc---ccc--------------cCCCc--------chhhh-HHHHHHH
Confidence 4568999999999999999988888765532100 000 00111 11112 3344433
Q ss_pred HHHHHHHHHHHHHHHHHhccChhHHHHHhhhhHHHHHHhhheeeCCcccchhhHHHHHHHHHHhHHHHHHHHhhh
Q 022511 208 LSLVMGIILNFTMFLCTIVNSALTTTIVGVLKGVGSTTLGFVVLGGVQVRALNVTGLLINTAGGVWYSYAKYQQK 282 (296)
Q Consensus 208 ~~g~~~~~~~~~~~~~~~~~sa~~~s~~~~l~pi~~~~~~~~~~~e~~~t~~~~~G~~lil~g~~~~~~~~~~~~ 282 (296)
+.-..+= ..-|.+....+++-++.++.+.-+...+++..+++ |+++....+|.+++++|........++++
T Consensus 72 ltm~vGe---i~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~-Ekl~~~g~lGc~l~v~Gst~iV~haP~e~ 142 (335)
T KOG2922|consen 72 LTMIVGE---IANFAAYAFAPASLVTPLGALSVIISAILASFFLK-EKLNLLGILGCVLCVVGSTTIVIHAPKEQ 142 (335)
T ss_pred HHHHHHh---HhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHH-HHHHHhhhhheeEEecccEEEEEecCccc
Confidence 3333333 44445668888999999999999999999999997 59999999999999999887765544433
No 104
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=87.44 E-value=6.5 Score=34.43 Aligned_cols=129 Identities=13% Similarity=0.078 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHHhccCCC-CCHHHHHHHHhhhHHHHHHHHHHHhCCchhhhhhhhcccCchhHHHHHHHHHHHHHHHHHH
Q 022511 141 FFQTMYLVLVEKSGAEDG-LSSVEIMFYNSFLSLPFLVFLIIVTGEFPGSLSLLFSKSNSFSFLVILILSLVMGIILNFT 219 (296)
Q Consensus 141 ~~~a~~~v~~k~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 219 (296)
++....+++.|++.++++ --|+.++......+.+........ +..+.. ...+...+.-++-.++........
T Consensus 27 ~~~v~~~~~nK~il~~~~f~~p~~lt~~~~~~~~l~~~v~~~l-~~~~~~------~~~~~~~~~~llpl~~~~~~~~v~ 99 (316)
T KOG1441|consen 27 VLSVGVIILNKYILSKYGFPFPITLTMLHLFCGALALLVIKVL-KLVPPS------KISSKLPLRTLLPLGLVFCISHVL 99 (316)
T ss_pred hhheeeEEeeHhhhccCCCCCccHHHHHHHHHHHHHHHHHHHh-cCCCCC------ccccccchHHHHHHHHHHHHHHHh
Confidence 344445667788877533 345555555444444444433322 221111 111223455566667777776777
Q ss_pred HHHHHhccChhHHHHHhhhhHHHHHHhhheeeCCcccch----------------------hhHHHHHHHHHHhHHHHHH
Q 022511 220 MFLCTIVNSALTTTIVGVLKGVGSTTLGFVVLGGVQVRA----------------------LNVTGLLINTAGGVWYSYA 277 (296)
Q Consensus 220 ~~~~~~~~sa~~~s~~~~l~pi~~~~~~~~~~~e~~~t~----------------------~~~~G~~lil~g~~~~~~~ 277 (296)
....+++.+-..+.++-.+.|++++++++++.+| +.+. .++.|....+++.+....+
T Consensus 100 ~n~Sl~~v~VsF~q~iKa~~P~~tvl~~~~~~~~-~~s~~~~lsL~piv~GV~ias~~e~~fn~~G~i~a~~s~~~~al~ 178 (316)
T KOG1441|consen 100 GNVSLSYVPVSFYQTIKALMPPFTVLLSVLLLGK-TYSSMTYLSLLPIVFGVAIASVTELSFNLFGFISAMISNLAFALR 178 (316)
T ss_pred cchhhhccchhHHHHHHhhcchhHHHHHHHHhCC-CCcceEEEEEEEeeeeEEEeeeccccccHHHHHHHHHHHHHHHHH
Confidence 7788899999999999999999999999999985 6654 6778888888887766544
No 105
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=86.79 E-value=1.6 Score=35.87 Aligned_cols=76 Identities=14% Similarity=0.077 Sum_probs=63.0
Q ss_pred ChhhhhHHHHHHHHHHHHHHHHhhhhcccchhHHHHHHhhHHHHHHHHHHHhcCccCCccchhhhhhhhhhhHhhh
Q 022511 47 DLMTAKKLLPVSLFYNANVAFALASLKGVNIPMYIAIKRLTPLAVLVAGFFSGKGKPTTQVTLSVLLTATGCVIAA 122 (296)
Q Consensus 47 ~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~s~~~~l~~~~pv~~~l~~~~~~~e~~~~~~~~~i~l~~~Gv~l~~ 122 (296)
+.+.+..++..|++..+..++.-++++-++..++.+.-++.-...++-+.++++|+.++.++.++.++++..++..
T Consensus 220 ~~d~l~am~ISgl~svgiSy~saWcvrVtSSTtySMvGALNKlp~alaGlvffdap~nf~si~sillGflsg~iYa 295 (309)
T COG5070 220 SVDSLMAMFISGLCSVGISYCSAWCVRVTSSTTYSMVGALNKLPIALAGLVFFDAPVNFLSIFSILLGFLSGAIYA 295 (309)
T ss_pred ChHHHHHHHHHHHHHhhhhhccceeEeehhhhHHHHHHHhhhChHHHhhhhhcCCchhHHHHHHHHHHHHHHHHHH
Confidence 3444456667777777888888899999999999999999999999999999999999999999988887776654
No 106
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=83.17 E-value=2.1 Score=31.33 Aligned_cols=52 Identities=15% Similarity=0.059 Sum_probs=38.7
Q ss_pred HHHHhccChhHHHHH-hhhhHHHHHHhhheeeCCcccchhhHHHHHHHHHHhHH
Q 022511 221 FLCTIVNSALTTTIV-GVLKGVGSTTLGFVVLGGVQVRALNVTGLLINTAGGVW 273 (296)
Q Consensus 221 ~~~~~~~sa~~~s~~-~~l~pi~~~~~~~~~~~e~~~t~~~~~G~~lil~g~~~ 273 (296)
+..+++.+-+.+..+ +.+.-+++++.|+++. ||..+...++|+++++.|+.+
T Consensus 59 ~~~L~~~dlSlavPi~Nsl~fvfT~l~g~~lg-e~~~~~~~~~G~~Li~~Gv~L 111 (113)
T PF10639_consen 59 FLLLGSADLSLAVPIANSLAFVFTALTGWLLG-EEVISRRTWLGMALILAGVAL 111 (113)
T ss_pred HHHHhcCCceeeehHHhHHHHHHHHHHHHHhc-CcccchhHHHHHHHHHcCeee
Confidence 344566664444333 5778899999998876 568888999999999999754
No 107
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=78.21 E-value=9.3 Score=32.69 Aligned_cols=58 Identities=14% Similarity=0.064 Sum_probs=49.6
Q ss_pred HHHHHHhccChhHHHHHhhhhHHHHHHhhheeeCCcccchhhHHHHHHHHHHhHHHHHH
Q 022511 219 TMFLCTIVNSALTTTIVGVLKGVGSTTLGFVVLGGVQVRALNVTGLLINTAGGVWYSYA 277 (296)
Q Consensus 219 ~~~~~~~~~sa~~~s~~~~l~pi~~~~~~~~~~~e~~~t~~~~~G~~lil~g~~~~~~~ 277 (296)
..+..+..++|+...+..-.-.+++.+++..+++. +++..||.|+..+..|.+.....
T Consensus 102 lm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~-ti~~~qWl~i~fv~lGlviVg~~ 159 (372)
T KOG3912|consen 102 LMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNR-TITGRQWLGILFVSLGLVIVGSL 159 (372)
T ss_pred HHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhc-ccchhhHHHHHHHHhhhheeeee
Confidence 34455678889999999999999999999999985 99999999999999998876543
No 108
>KOG2766 consensus Predicted membrane protein [Function unknown]
Probab=77.24 E-value=0.14 Score=42.66 Aligned_cols=135 Identities=13% Similarity=0.129 Sum_probs=83.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhccCCCCCH-HHHHHHHhhhHHHHHHHHHHHhCCchhhhhhhhcccCchhHHHHHHH
Q 022511 130 LSGYSMALTSVFFQTMYLVLVEKSGAEDGLSS-VEIMFYNSFLSLPFLVFLIIVTGEFPGSLSLLFSKSNSFSFLVILIL 208 (296)
Q Consensus 130 ~~G~~~~l~s~~~~a~~~v~~k~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (296)
+.|+.++-.-++|........+.+.+++ .|. ..-.|.+...-++...|+...- ..... .. |---++
T Consensus 17 li~~~LGQiLSL~~t~~a~tss~la~k~-iN~Pt~QtFl~Y~LLalVY~~~~~fR--~~~~~----~~------~~hYil 83 (336)
T KOG2766|consen 17 LIGLGLGQILSLLITSTAFTSSELARKG-INAPTSQTFLNYVLLALVYGPIMLFR--RKYIK----AK------WRHYIL 83 (336)
T ss_pred hheeeHHHHHHHHHHcchhhhHHHHhcc-CCCccHHHHHHHHHHHHHHhhHHHhh--hHHHH----HH------HHHhhh
Confidence 4555555444445555555555555543 333 3333444433344444433331 11110 01 111233
Q ss_pred HHHHHHHHHHHHHHHHhccChhHHHHHhhhhHHHHHHhhheeeCCcccchhhHHHHHHHHHHhHHHHHHH
Q 022511 209 SLVMGIILNFTMFLCTIVNSALTTTIVGVLKGVGSTTLGFVVLGGVQVRALNVTGLLINTAGGVWYSYAK 278 (296)
Q Consensus 209 ~g~~~~~~~~~~~~~~~~~sa~~~s~~~~l~pi~~~~~~~~~~~e~~~t~~~~~G~~lil~g~~~~~~~~ 278 (296)
.++.-.-.++....+.++++-+.+..+..-..+...+++|++++ .+-.+.++.|.++++.|+++.....
T Consensus 84 la~~DVEaNy~vV~AyQyTsmtSi~lLDcwaip~v~~lsw~fLk-trYrlmki~gV~iCi~GvvmvV~sD 152 (336)
T KOG2766|consen 84 LAFVDVEANYFVVKAYQYTSMTSIMLLDCWAIPCVLVLSWFFLK-TRYRLMKISGVVICIVGVVMVVFSD 152 (336)
T ss_pred eeEEeecccEEEeeehhhcchHHHHHHHHhhhHHHHHHHHHHHH-HHHhhheeeeEEeEecceEEEEEee
Confidence 34444445666667789999999999999999999999999998 6999999999999999999876544
No 109
>PRK02237 hypothetical protein; Provisional
Probab=71.56 E-value=19 Score=25.96 Aligned_cols=46 Identities=24% Similarity=0.151 Sum_probs=38.1
Q ss_pred hHHHHHhhhhHHHHHHhhheeeCCcccchhhHHHHHHHHHHhHHHHH
Q 022511 230 LTTTIVGVLKGVGSTTLGFVVLGGVQVRALNVTGLLINTAGGVWYSY 276 (296)
Q Consensus 230 ~~~s~~~~l~pi~~~~~~~~~~~e~~~t~~~~~G~~lil~g~~~~~~ 276 (296)
-.++..+-+-.+.+.++++.+-| ++|+...++|..++++|+.....
T Consensus 60 RvYAAYGGvyI~~Sl~W~w~vdg-~~Pd~~D~iGa~v~L~G~~iI~~ 105 (109)
T PRK02237 60 RVYAAYGGVYVAGSLLWLWVVDG-VRPDRWDWIGAAICLVGMAVIMY 105 (109)
T ss_pred hHHHHhhhHHHHHHHHHHHHhcC-cCCChhHHHhHHHHHHhHHHhee
Confidence 34566677788888999999988 59999999999999999876543
No 110
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=68.09 E-value=20 Score=25.80 Aligned_cols=46 Identities=22% Similarity=0.164 Sum_probs=38.4
Q ss_pred hHHHHHhhhhHHHHHHhhheeeCCcccchhhHHHHHHHHHHhHHHHH
Q 022511 230 LTTTIVGVLKGVGSTTLGFVVLGGVQVRALNVTGLLINTAGGVWYSY 276 (296)
Q Consensus 230 ~~~s~~~~l~pi~~~~~~~~~~~e~~~t~~~~~G~~lil~g~~~~~~ 276 (296)
-.++..+-+-.+.+.++++.+-| ++|+...++|..++++|+.....
T Consensus 58 RvYAAYGGvfI~~Sl~W~w~vdg-~~Pd~~D~iGa~i~L~G~~iI~~ 103 (107)
T PF02694_consen 58 RVYAAYGGVFIVASLLWGWLVDG-VRPDRWDWIGAAICLVGVAIILF 103 (107)
T ss_pred hHHHHhhhhHHHHHHHHHhhhcC-cCCChHHHHhHHHHHHhHHheEe
Confidence 34566677788899999999988 59999999999999999876544
No 111
>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family. This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane
Probab=65.15 E-value=1e+02 Score=27.39 Aligned_cols=252 Identities=12% Similarity=0.024 Sum_probs=131.3
Q ss_pred HHHHHHHHHHHHHHhc-CCcc----ccccChhhhhHHHHHHHHHHHHHHHHhhhhcccchhHHHHHH-hhHHHHHHHHHH
Q 022511 23 LQQLATALLIQAGRQM-GYTK----SKAIDLMTAKKLLPVSLFYNANVAFALASLKGVNIPMYIAIK-RLTPLAVLVAGF 96 (296)
Q Consensus 23 ~r~~~~~~~l~~~~~~-~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~s~~~~l~-~~~pv~~~l~~~ 96 (296)
.|.+++.++....... .-.+ .+..+.+.+......|++.......+-.+.+|+..|..+-+. .++-++=.++--
T Consensus 40 v~gi~swli~P~~~a~l~ip~~~~i~~~~~~~~l~~~~l~G~lWGIGgltfGl~mryLGvSLG~sI~lGl~~~~GTlipp 119 (344)
T PF06379_consen 40 VQGIFSWLIVPWLWALLAIPDFFSIYSATPASTLFWTFLFGVLWGIGGLTFGLAMRYLGVSLGQSIALGLCAVFGTLIPP 119 (344)
T ss_pred HHHHHHHHHHHHHHHHHhCCcHHHHHHhCChhHHHHHHHHHHHHhcchhhHhHHHHHHhHHHHHHHHHHHHHHHhhchHH
Confidence 3666666655544322 1111 113344555666777888777777777888887666544222 222233333323
Q ss_pred HhcC-------ccCCccchhhhhhhhhhhHhhhcC----C-------cccc-hhHHHHHHHHHHHHHHHHHHHHHhc---
Q 022511 97 FSGK-------GKPTTQVTLSVLLTATGCVIAALG----D-------FSFD-LSGYSMALTSVFFQTMYLVLVEKSG--- 154 (296)
Q Consensus 97 ~~~~-------e~~~~~~~~~i~l~~~Gv~l~~~~----~-------~~~~-~~G~~~~l~s~~~~a~~~v~~k~~~--- 154 (296)
++.+ .+-......+++++++|+++.... | .++| ..|+..+++|.+++|..+.=...-.
T Consensus 120 i~~g~~~~l~~~~~g~~vL~Gv~v~LiGIai~g~AG~~Ke~~~~~~~~efn~~kGl~iAv~sGv~Sa~fn~g~~ag~pi~ 199 (344)
T PF06379_consen 120 IFQGTFDELLATPSGQIVLLGVAVCLIGIAICGKAGSMKEKELGEEAKEFNFKKGLIIAVLSGVMSACFNFGLDAGKPIH 199 (344)
T ss_pred HHcCcccccccCCCchhhhhHHHHHHHHHHHHhHHHHhhhhhhccchhhhhhhhhHHHHHHHHHHHHHHHHHHHcCCcHH
Confidence 3332 222346778999999999986431 1 1223 3799999999999999887554221
Q ss_pred ---cCCCCCHHHHHH----HHhhhHHHHHHHHHHHh---CCchhhhhhhhcccCc--hhHHHHHHHHHHHHHHHHHHHHH
Q 022511 155 ---AEDGLSSVEIMF----YNSFLSLPFLVFLIIVT---GEFPGSLSLLFSKSNS--FSFLVILILSLVMGIILNFTMFL 222 (296)
Q Consensus 155 ---~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~~~--~~~~~~~~~~g~~~~~~~~~~~~ 222 (296)
.+++.++..... ....-++..-...++.. ....+..+. .....+ ..-.....+.|++-+.+.+++-+
T Consensus 200 ~~a~a~G~~~l~~~l~~~vvv~~GGf~tN~~yc~~~l~~~k~~s~~~d-~~~~~~~~~~N~~~~aLaG~lWy~qfffYg~ 278 (344)
T PF06379_consen 200 EAAVAAGVNPLYANLPVYVVVLWGGFITNLIYCLILLAKNKNWSWKGD-YSVAKPPLLKNYLFCALAGVLWYSQFFFYGM 278 (344)
T ss_pred HHHHHcCCCcHHHhCchhhhhhhhHHHHHHHHHHHHHhhcCCCccccc-cccccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 122333322111 11111223333333221 011111000 000011 12234445566665555544444
Q ss_pred HHhccC----hhHHHHHhhhhHHHHHHhhheeeCCc-----ccchhhHHHHHHHHHHhHHHHH
Q 022511 223 CTIVNS----ALTTTIVGVLKGVGSTTLGFVVLGGV-----QVRALNVTGLLINTAGGVWYSY 276 (296)
Q Consensus 223 ~~~~~s----a~~~s~~~~l~pi~~~~~~~~~~~e~-----~~t~~~~~G~~lil~g~~~~~~ 276 (296)
.-.+.+ .....+...+.-+++-++|.. ++|= +.-...++|.++++.+++...+
T Consensus 279 G~s~lg~~~~~~sW~i~ma~~vl~snvwGl~-lkEWKg~s~kt~~vl~~G~~vlI~s~~ivG~ 340 (344)
T PF06379_consen 279 GESKLGASGPFSSWAIHMALIVLFSNVWGLI-LKEWKGASKKTIRVLVLGIAVLILSVVIVGY 340 (344)
T ss_pred HHHHhcCccccHHHHHHHHHHHHHHHHHHHH-HHHhccCCcccHHHHHHHHHHHHHHHHHHhc
Confidence 444443 566777777788888888865 4531 2335568888888888776543
No 112
>PRK02237 hypothetical protein; Provisional
Probab=64.05 E-value=52 Score=23.76 Aligned_cols=37 Identities=8% Similarity=0.024 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHhcCccCCccchhhhhhhhhhhHhhhc
Q 022511 87 TPLAVLVAGFFSGKGKPTTQVTLSVLLTATGCVIAAL 123 (296)
Q Consensus 87 ~pv~~~l~~~~~~~e~~~~~~~~~i~l~~~Gv~l~~~ 123 (296)
..+...+-.+.+-|+||++.++.+..++++|+.++..
T Consensus 69 yI~~Sl~W~w~vdg~~Pd~~D~iGa~v~L~G~~iI~~ 105 (109)
T PRK02237 69 YVAGSLLWLWVVDGVRPDRWDWIGAAICLVGMAVIMY 105 (109)
T ss_pred HHHHHHHHHHHhcCcCCChhHHHhHHHHHHhHHHhee
Confidence 3344446678888999999999999999999988754
No 113
>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function.
Probab=64.04 E-value=31 Score=24.77 Aligned_cols=60 Identities=10% Similarity=0.014 Sum_probs=40.5
Q ss_pred HHHHHHHHhhhhcccchhHHHHHHh-hHHHHHHHHHHHhcCccCCccchhhhhhhhhhhHh
Q 022511 61 YNANVAFALASLKGVNIPMYIAIKR-LTPLAVLVAGFFSGKGKPTTQVTLSVLLTATGCVI 120 (296)
Q Consensus 61 ~~~~~~~~~~al~~~~~s~~~~l~~-~~pv~~~l~~~~~~~e~~~~~~~~~i~l~~~Gv~l 120 (296)
|++....+-.+.+.-+.+.-.+++= .+...-+.++.+++||++++....+-.+.+.++..
T Consensus 45 Y~l~VPANRiG~~~~s~~QLKi~QEvitL~vF~~Fsv~~l~E~l~~n~l~af~~i~~av~f 105 (108)
T PF04342_consen 45 YCLQVPANRIGYQTFSLAQLKIIQEVITLVVFAPFSVFYLGEPLKWNYLWAFLCILGAVYF 105 (108)
T ss_pred HHHhCcchhhhccccCHHHHHHHHHHHhhheeHHHHHHHhCCCccHHHHHHHHHHHHhhhe
Confidence 5555555555666666655555443 23334457788899999999999888888777654
No 114
>PF14880 COX14: Cytochrome oxidase c assembly
Probab=60.08 E-value=6.5 Score=25.01 Aligned_cols=27 Identities=19% Similarity=0.345 Sum_probs=20.1
Q ss_pred ccchhhHHHHHHHHHHhHHHHHHHHhh
Q 022511 255 QVRALNVTGLLINTAGGVWYSYAKYQQ 281 (296)
Q Consensus 255 ~~t~~~~~G~~lil~g~~~~~~~~~~~ 281 (296)
+.+...++|..++..+.+.|+..+...
T Consensus 15 R~tV~~Lig~T~~~g~~~~~~~y~~~~ 41 (59)
T PF14880_consen 15 RTTVLGLIGFTVYGGGLTVYTVYSYFK 41 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567788888888888888887665443
No 115
>TIGR02865 spore_II_E stage II sporulation protein E. Stage II sporulation protein E (SpoIIE) is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation. By means of it protein phosphatase activity, located in the C-terminal region, it activates sigma-F. All proteins that score above the trusted cutoff to this model are found in endospore-forming Gram-positive bacteria. Surprisingly, a sequence from the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis is homologous, and scores between the trusted and noise cutoffs.
Probab=59.61 E-value=2e+02 Score=28.89 Aligned_cols=43 Identities=12% Similarity=0.112 Sum_probs=30.4
Q ss_pred HHHHHHhhHHHHHHHHHHHhcCccCCccchhhhhhhhhhhHhh
Q 022511 79 MYIAIKRLTPLAVLVAGFFSGKGKPTTQVTLSVLLTATGCVIA 121 (296)
Q Consensus 79 ~~~~l~~~~pv~~~l~~~~~~~e~~~~~~~~~i~l~~~Gv~l~ 121 (296)
-+.++..+.|+-++.++.....+|.+...+.+.+..++|.+.+
T Consensus 12 Ra~il~~l~PFg~af~~a~~~~~~~~~~~~~~~~~~~~G~~t~ 54 (764)
T TIGR02865 12 RAVIVSPMAPFGIAFLAAVLLAKKGGDKAFFSALGVLLGAISI 54 (764)
T ss_pred HHHHhcCCCchHHHHHHHHHHhhcccchHHHHHHHHHHHHHHh
Confidence 3456778889999999888777776555566666666676544
No 116
>PF07444 Ycf66_N: Ycf66 protein N-terminus; InterPro: IPR010004 This entry represents Ycf66, a protein that is restricted to the chloroplasts of simple plants and algae. It is also found in the cyanobacteria. The function is unknown. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=58.55 E-value=14 Score=25.48 Aligned_cols=27 Identities=11% Similarity=0.214 Sum_probs=22.2
Q ss_pred ccchhhHHHHHHHHHHhHHHHHHHHhh
Q 022511 255 QVRALNVTGLLINTAGGVWYSYAKYQQ 281 (296)
Q Consensus 255 ~~t~~~~~G~~lil~g~~~~~~~~~~~ 281 (296)
..++..++|+++++.|..+|..+..++
T Consensus 4 ~~~~~~iLgi~l~~~~~~Ly~lr~~~P 30 (84)
T PF07444_consen 4 GFGPSYILGIILILGGLALYFLRFFRP 30 (84)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHCc
Confidence 578899999999999999997655443
No 117
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=56.39 E-value=13 Score=26.65 Aligned_cols=38 Identities=16% Similarity=0.214 Sum_probs=30.8
Q ss_pred hHHHHHHHHHHHhcCccCCccchhhhhhhhhhhHhhhc
Q 022511 86 LTPLAVLVAGFFSGKGKPTTQVTLSVLLTATGCVIAAL 123 (296)
Q Consensus 86 ~~pv~~~l~~~~~~~e~~~~~~~~~i~l~~~Gv~l~~~ 123 (296)
...+...+-.+.+-|+||.+.++.+..++++|+.++..
T Consensus 66 vfI~~Sl~W~w~vdg~~Pd~~D~iGa~i~L~G~~iI~~ 103 (107)
T PF02694_consen 66 VFIVASLLWGWLVDGVRPDRWDWIGAAICLVGVAIILF 103 (107)
T ss_pred hHHHHHHHHHhhhcCcCCChHHHHhHHHHHHhHHheEe
Confidence 33445556677888999999999999999999988754
No 118
>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function.
Probab=56.28 E-value=10 Score=27.15 Aligned_cols=29 Identities=10% Similarity=0.095 Sum_probs=23.7
Q ss_pred HHhhheeeCCcccchhhHHHHHHHHHHhHH
Q 022511 244 TTLGFVVLGGVQVRALNVTGLLINTAGGVW 273 (296)
Q Consensus 244 ~~~~~~~~~e~~~t~~~~~G~~lil~g~~~ 273 (296)
...++++++| ++++.+..|..+++.|+..
T Consensus 77 ~~Fsv~~l~E-~l~~n~l~af~~i~~av~f 105 (108)
T PF04342_consen 77 APFSVFYLGE-PLKWNYLWAFLCILGAVYF 105 (108)
T ss_pred HHHHHHHhCC-CccHHHHHHHHHHHHhhhe
Confidence 4467788885 9999999999998887653
No 119
>PF06946 Phage_holin_5: Phage holin; InterPro: IPR009708 This entry represents the Bacteriophage A118, holin protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This protein family represent one of a large number of mutually dissimilar families of phage holins. It is thought that the temporal precision of holin-mediated lysis may occur through the build-up of a holin oligomer which causes the lysis [].
Probab=55.72 E-value=69 Score=22.46 Aligned_cols=59 Identities=12% Similarity=0.071 Sum_probs=32.8
Q ss_pred HHHHhccChhHHHHHhhhhHHHHHHhhhe---eeCCcccchhhHHHHHHHHHHhHHHHHHHH
Q 022511 221 FLCTIVNSALTTTIVGVLKGVGSTTLGFV---VLGGVQVRALNVTGLLINTAGGVWYSYAKY 279 (296)
Q Consensus 221 ~~~~~~~sa~~~s~~~~l~pi~~~~~~~~---~~~e~~~t~~~~~G~~lil~g~~~~~~~~~ 279 (296)
..+++++.-...-.+-.+.-+..+++|.+ +.++..+-...|.|.+.-+++..++....+
T Consensus 22 Vq~IkkT~~v~~K~iPlIs~viGilLG~~~~~~~~~~~l~~~~~aG~laGlAaTGL~e~~t~ 83 (93)
T PF06946_consen 22 VQAIKKTKVVPNKWIPLISVVIGILLGAAAYPLTGDGNLALMAWAGGLAGLAATGLFEQFTN 83 (93)
T ss_pred HHHHHHhccCCcchhhHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHhhhhhhhHHHHHHh
Confidence 45567765333333333444555555443 333323334458899888888888766544
No 120
>COG3086 RseC Positive regulator of sigma E activity [Signal transduction mechanisms]
Probab=53.75 E-value=27 Score=26.62 Aligned_cols=26 Identities=15% Similarity=0.151 Sum_probs=16.6
Q ss_pred ccChhHHHHHhhhhHHHHHHhhheee
Q 022511 226 VNSALTTTIVGVLKGVGSTTLGFVVL 251 (296)
Q Consensus 226 ~~sa~~~s~~~~l~pi~~~~~~~~~~ 251 (296)
.-|....+.+.|+-|++..+++.+.+
T Consensus 71 EkslL~sA~LvYi~PL~~l~v~~~La 96 (150)
T COG3086 71 EKSLLKSALLVYIFPLVGLFLGAILA 96 (150)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666677777777776666554
No 121
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=50.61 E-value=2.1e+02 Score=26.54 Aligned_cols=23 Identities=17% Similarity=0.473 Sum_probs=17.1
Q ss_pred hhHHHHHHHHHHhHHHHHHHHhh
Q 022511 259 LNVTGLLINTAGGVWYSYAKYQQ 281 (296)
Q Consensus 259 ~~~~G~~lil~g~~~~~~~~~~~ 281 (296)
....|.++...|...|...++++
T Consensus 417 ~~~~~~~~~~~g~~~y~~~~~~~ 439 (473)
T TIGR00905 417 YLLLGFILYAPGIIFYGRARKER 439 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 45678888899988888765544
No 122
>KOG4831 consensus Unnamed protein [Function unknown]
Probab=47.28 E-value=48 Score=23.87 Aligned_cols=60 Identities=17% Similarity=0.124 Sum_probs=42.1
Q ss_pred HHHHHHHHhhhhcccchhHHH-HHHhhHHHHHHHHHHHhcCccCCccchhhhhhhhhhhHh
Q 022511 61 YNANVAFALASLKGVNIPMYI-AIKRLTPLAVLVAGFFSGKGKPTTQVTLSVLLTATGCVI 120 (296)
Q Consensus 61 ~~~~~~~~~~al~~~~~s~~~-~l~~~~pv~~~l~~~~~~~e~~~~~~~~~i~l~~~Gv~l 120 (296)
.-....+++.-+++.|.+.+. +-++++-.++++.+.....|...++..++..+..+|.-+
T Consensus 62 NqcgSaly~~tLa~a~islavpv~nsltfafta~~G~~LGE~~~g~~a~lGt~liv~Gi~L 122 (125)
T KOG4831|consen 62 NQCGSALYYLTLASAPISLAVPVTNSLTFAFTAIFGKALGEETQGGLALLGTSLIVFGIWL 122 (125)
T ss_pred HHhhHHHHHHHHhcCCceeeeeecchhHHHHHHHHHHHhccccccceeehhhhHHhhhhhh
Confidence 334445666677777776654 455677888999987765555567777888888888755
No 123
>TIGR01167 LPXTG_anchor LPXTG-motif cell wall anchor domain. A common feature of this proteins containing this domain appears to be a high proportion of charged and zwitterionic residues immediatedly upstream of the LPXTG motif. This model differs from other descriptions of the LPXTG region by including a portion of that upstream charged region.
Probab=46.98 E-value=17 Score=19.75 Aligned_cols=18 Identities=28% Similarity=0.257 Sum_probs=10.4
Q ss_pred CcccchhhHHHHHHHHHH
Q 022511 253 GVQVRALNVTGLLINTAG 270 (296)
Q Consensus 253 e~~~t~~~~~G~~lil~g 270 (296)
|+.-++..++|..++..+
T Consensus 7 ~~~~~~~~~~G~~l~~~~ 24 (34)
T TIGR01167 7 ESGNSLLLLLGLLLLGLG 24 (34)
T ss_pred CcccHHHHHHHHHHHHHH
Confidence 335566777777554443
No 124
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=40.92 E-value=1.8e+02 Score=25.08 Aligned_cols=54 Identities=15% Similarity=0.059 Sum_probs=43.3
Q ss_pred cccchhHHHHHHhhHHHHHHHHHHHhcCccCCccchhhhhhhhhhhHhhhcCCc
Q 022511 73 KGVNIPMYIAIKRLTPLAVLVAGFFSGKGKPTTQVTLSVLLTATGCVIAALGDF 126 (296)
Q Consensus 73 ~~~~~s~~~~l~~~~pv~~~l~~~~~~~e~~~~~~~~~i~l~~~Gv~l~~~~~~ 126 (296)
+.-.+..+..+....-..+.+++++++.++.+..-.-+..+.+.|+.+-..++.
T Consensus 282 ~~fGA~~aatvTTaRKavTi~lSfllFsKPfT~qy~~~gllv~lgI~Ln~ysk~ 335 (367)
T KOG1582|consen 282 KLFGALIAATVTTARKAVTILLSFLLFSKPFTEQYVWSGLLVVLGIYLNMYSKR 335 (367)
T ss_pred HHhchhHHHHHHHhHhHHHHHHHHHHHcCchHHHHhhhhHHHHHHHHhhcccCC
Confidence 344566666677777788899999999999999988899999999998666553
No 125
>PF04246 RseC_MucC: Positive regulator of sigma(E), RseC/MucC; InterPro: IPR007359 This bacterial family of integral membrane proteins represents a positive regulator of the sigma(E) transcription factor, namely RseC/MucC. The sigma(E) transcription factor is up-regulated by cell envelope protein misfolding, and regulates the expression of genes that are collectively termed ECF (devoted to Extra-Cellular Functions) []. In Pseudomonas aeruginosa, derepression of sigma(E) is associated with the alginate-overproducing phenotype characteristic of chronic respiratory tract colonization in cystic fibrosis patients. The mechanism by which RseC/MucC positively regulates the sigma(E) transcription factor is unknown. RseC is also thought to have a role in thiamine biosynthesis in Salmonella typhimurium []. In addition, this family also includes an N-terminal part of RnfF, a Rhodobacter capsulatus protein, of unknown function, that is essential for nitrogen fixation. This protein also contains a domain found in ApbE protein IPR003374 from INTERPRO, which is itself involved in thiamine biosynthesis.
Probab=39.50 E-value=51 Score=24.76 Aligned_cols=24 Identities=21% Similarity=0.079 Sum_probs=16.5
Q ss_pred ChhHHHHHhhhhHHHHHHhhheee
Q 022511 228 SALTTTIVGVLKGVGSTTLGFVVL 251 (296)
Q Consensus 228 sa~~~s~~~~l~pi~~~~~~~~~~ 251 (296)
+....+++.|+-|++..+.+.++.
T Consensus 66 ~~~~aa~l~Y~lPll~li~g~~l~ 89 (135)
T PF04246_consen 66 SLLKAAFLVYLLPLLALIAGAVLG 89 (135)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667777778888877776554
No 126
>PRK12437 prolipoprotein diacylglyceryl transferase; Reviewed
Probab=39.36 E-value=32 Score=29.46 Aligned_cols=23 Identities=17% Similarity=0.283 Sum_probs=18.8
Q ss_pred cchhhHHHHHHHHHHhHHHHHHH
Q 022511 256 VRALNVTGLLINTAGGVWYSYAK 278 (296)
Q Consensus 256 ~t~~~~~G~~lil~g~~~~~~~~ 278 (296)
+|..|+++..+++.|+.+....+
T Consensus 235 ls~~Q~~sl~~i~~g~~~~~~~~ 257 (269)
T PRK12437 235 LRIAQVISIPLIIIGIILIIYRR 257 (269)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Confidence 78899999999999987765433
No 127
>PRK01637 hypothetical protein; Reviewed
Probab=38.29 E-value=94 Score=26.76 Aligned_cols=22 Identities=0% Similarity=-0.073 Sum_probs=11.3
Q ss_pred chhhHHHHHHHHHHhHHHHHHH
Q 022511 257 RALNVTGLLINTAGGVWYSYAK 278 (296)
Q Consensus 257 t~~~~~G~~lil~g~~~~~~~~ 278 (296)
-|..+.+.++.+.+-+-....+
T Consensus 247 lWlyl~~~ilL~Gaelna~~~~ 268 (286)
T PRK01637 247 VWVYLSWCIVLLGAEITATLGE 268 (286)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666555554444433
No 128
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=36.69 E-value=1e+02 Score=22.34 Aligned_cols=38 Identities=13% Similarity=0.012 Sum_probs=17.9
Q ss_pred hHHHHHHhhheeeCCc-ccchhhHHHHHHHHHHhHHHHH
Q 022511 239 KGVGSTTLGFVVLGGV-QVRALNVTGLLINTAGGVWYSY 276 (296)
Q Consensus 239 ~pi~~~~~~~~~~~e~-~~t~~~~~G~~lil~g~~~~~~ 276 (296)
..++.+.+||+.=+-. +-.|..+++.++-+.+.++...
T Consensus 55 GilVGa~iG~llD~~agTsPwglIv~lllGf~AG~lnv~ 93 (116)
T COG5336 55 GILVGAGIGWLLDKFAGTSPWGLIVFLLLGFGAGVLNVL 93 (116)
T ss_pred HHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHH
Confidence 4466677777532111 2334444444444444444433
No 129
>PRK02463 OxaA-like protein precursor; Provisional
Probab=35.70 E-value=1.5e+02 Score=25.93 Aligned_cols=40 Identities=8% Similarity=0.003 Sum_probs=25.1
Q ss_pred HHhhhhHHHHHHhhheeeCCcccchhhHHHHHHHHHHhHHHH
Q 022511 234 IVGVLKGVGSTTLGFVVLGGVQVRALNVTGLLINTAGGVWYS 275 (296)
Q Consensus 234 ~~~~l~pi~~~~~~~~~~~e~~~t~~~~~G~~lil~g~~~~~ 275 (296)
...++-|+...++++.+- .-+...-.+|.++.++=.++.+
T Consensus 209 ~m~~~~Pim~~~~~~~~P--agL~lYW~~snlfsi~Q~~i~~ 248 (307)
T PRK02463 209 AMMYMMPIMMVVFSFSSP--AGVGLYWLVGGFFSIIQQLITT 248 (307)
T ss_pred HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
Confidence 355677888877776543 2566666667666666555544
No 130
>COG1742 Uncharacterized conserved protein [Function unknown]
Probab=34.29 E-value=33 Score=24.56 Aligned_cols=37 Identities=14% Similarity=0.131 Sum_probs=29.1
Q ss_pred HHHHHHHHHHhcCccCCccchhhhhhhhhhhHhhhcC
Q 022511 88 PLAVLVAGFFSGKGKPTTQVTLSVLLTATGCVIAALG 124 (296)
Q Consensus 88 pv~~~l~~~~~~~e~~~~~~~~~i~l~~~Gv~l~~~~ 124 (296)
.+...+-.+++-|.||.+.+|.+-.++++|+.++...
T Consensus 69 I~~sL~W~~~Vdg~~pdr~D~~Ga~icl~G~~vil~~ 105 (109)
T COG1742 69 IAASLAWLWVVDGVRPDRYDWIGAAICLAGVAVILFG 105 (109)
T ss_pred HHHHHHHHHHHcCcCCcHHHhhhHHHHHhceeeeEeC
Confidence 3444455677789999999999999999998776543
No 131
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter. Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.
Probab=34.21 E-value=3.8e+02 Score=24.78 Aligned_cols=23 Identities=13% Similarity=0.260 Sum_probs=17.2
Q ss_pred hhhHHHHHHHHHHhHHHHHHHHh
Q 022511 258 ALNVTGLLINTAGGVWYSYAKYQ 280 (296)
Q Consensus 258 ~~~~~G~~lil~g~~~~~~~~~~ 280 (296)
.....|.++.+.|..+|...|++
T Consensus 411 ~~~~~~~~~~~~g~~~y~~~~~~ 433 (468)
T TIGR03810 411 KYLLLSAILYAPGIYFYARARKE 433 (468)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 35778888889999999765443
No 132
>COG1971 Predicted membrane protein [Function unknown]
Probab=32.53 E-value=62 Score=26.03 Aligned_cols=44 Identities=11% Similarity=0.013 Sum_probs=23.2
Q ss_pred hhHHHHHhhhhHHHHHHhhheeeCCcccchhhHHHHHH-HHHHhHH
Q 022511 229 ALTTTIVGVLKGVGSTTLGFVVLGGVQVRALNVTGLLI-NTAGGVW 273 (296)
Q Consensus 229 a~~~s~~~~l~pi~~~~~~~~~~~e~~~t~~~~~G~~l-il~g~~~ 273 (296)
+...++.....|......+..+=+ -.-.+.+|+|.++ .+.|..+
T Consensus 40 a~~fG~f~~i~pliG~~~g~~~s~-~i~~~~~wigf~lL~~lG~~m 84 (190)
T COG1971 40 ALIFGVFQAIMPLIGWFIGKFLST-FIAEWAHWIGFVLLIILGLKM 84 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 344455555666666666654432 1345667666554 4455443
No 133
>PLN02776 prenyltransferase
Probab=30.86 E-value=3.9e+02 Score=23.85 Aligned_cols=47 Identities=11% Similarity=0.089 Sum_probs=24.5
Q ss_pred hcCccCCccchhhhhhhhhhhHhhhc-CCcccchhHHHHHHHHHHHHHH
Q 022511 98 SGKGKPTTQVTLSVLLTATGCVIAAL-GDFSFDLSGYSMALTSVFFQTM 145 (296)
Q Consensus 98 ~~~e~~~~~~~~~i~l~~~Gv~l~~~-~~~~~~~~G~~~~l~s~~~~a~ 145 (296)
.+|++-....+++.+.+..+.++.-. -+.+.++.+ .+.....++|-.
T Consensus 118 ~lKR~t~~~~~lG~~~Ga~ppL~Gw~Avtg~~~~~~-~~Lf~~~~~Wq~ 165 (341)
T PLN02776 118 PLKQIHPANTWVGAVVGAIPPLMGWAAASGQLDAGA-MVLAAALYFWQM 165 (341)
T ss_pred hHccCCchhHHHHHHHHHHHHHHHHHHHcCCCCHHH-HHHHHHHHHHHH
Confidence 46777777667676666555544211 122344333 344555565555
No 134
>PRK10666 ammonium transporter; Provisional
Probab=30.76 E-value=4.4e+02 Score=24.39 Aligned_cols=79 Identities=9% Similarity=-0.016 Sum_probs=34.8
Q ss_pred cCccCCccchhhhhhhhhhhHhhhcC-CcccchhHHHHHHHHHHHHHHHHHHHHHhcc-CCCCCHHHHHHHHhhhHHHHH
Q 022511 99 GKGKPTTQVTLSVLLTATGCVIAALG-DFSFDLSGYSMALTSVFFQTMYLVLVEKSGA-EDGLSSVEIMFYNSFLSLPFL 176 (296)
Q Consensus 99 ~~e~~~~~~~~~i~l~~~Gv~l~~~~-~~~~~~~G~~~~l~s~~~~a~~~v~~k~~~~-~~~~~~~~~~~~~~~~~~~~l 176 (296)
.++|++...... -.+.|.+-++.. +.-..+...+...++++..-....+.|+..| +...+...+-....+.+.+..
T Consensus 274 ~~gk~~~~~~~n--G~LaGLVaITa~a~~v~p~~A~iiG~vag~v~~~~~~~l~~~~~iDD~~~a~~vHgv~Gi~G~l~~ 351 (428)
T PRK10666 274 LRGKPSLLGACS--GAIAGLVGVTPACGYVGVGGALIIGVVAGLAGLWGVTMLKRWLRVDDPCDVFGVHGVCGIVGCILT 351 (428)
T ss_pred HhCCCCHHHHHH--HHhhhhhhcccccccCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcCccHhhhHhHHHHHHHH
Confidence 345555443322 222455444332 2222334556666666654443333443221 222455555555555555544
Q ss_pred HHH
Q 022511 177 VFL 179 (296)
Q Consensus 177 ~~~ 179 (296)
..+
T Consensus 352 glf 354 (428)
T PRK10666 352 GIF 354 (428)
T ss_pred HHh
Confidence 443
No 135
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=29.88 E-value=57 Score=24.21 Aligned_cols=10 Identities=20% Similarity=0.407 Sum_probs=3.4
Q ss_pred HHHHHHHhhh
Q 022511 273 WYSYAKYQQK 282 (296)
Q Consensus 273 ~~~~~~~~~~ 282 (296)
.|..+|++++
T Consensus 85 ~y~irR~~Kk 94 (122)
T PF01102_consen 85 SYCIRRLRKK 94 (122)
T ss_dssp HHHHHHHS--
T ss_pred HHHHHHHhcc
Confidence 3444444333
No 136
>PF05961 Chordopox_A13L: Chordopoxvirus A13L protein; InterPro: IPR009236 This family consists of A13L proteins from the Chordopoxviruses. A13L or p8 is one of the three most abundant membrane proteins of the intracellular mature Vaccinia virus [].
Probab=28.97 E-value=93 Score=20.30 Aligned_cols=22 Identities=9% Similarity=0.138 Sum_probs=14.9
Q ss_pred hhHHHHHHHHHHhHHHHHHHHh
Q 022511 259 LNVTGLLINTAGGVWYSYAKYQ 280 (296)
Q Consensus 259 ~~~~G~~lil~g~~~~~~~~~~ 280 (296)
.-.+++-+++.|.++|....++
T Consensus 5 ~iLi~ICVaii~lIlY~iYnr~ 26 (68)
T PF05961_consen 5 FILIIICVAIIGLILYGIYNRK 26 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHhcc
Confidence 3456777778888888765443
No 137
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=27.61 E-value=5.4e+02 Score=24.44 Aligned_cols=25 Identities=16% Similarity=0.001 Sum_probs=13.9
Q ss_pred hccChhHHHHHhhhhHHHHHHhhhe
Q 022511 225 IVNSALTTTIVGVLKGVGSTTLGFV 249 (296)
Q Consensus 225 ~~~sa~~~s~~~~l~pi~~~~~~~~ 249 (296)
+|..+....+..-..|+-+.+.|.+
T Consensus 342 GRv~si~~~~~~g~~~lGsll~G~l 366 (524)
T PF05977_consen 342 GRVFSIYQMVFFGGMPLGSLLWGFL 366 (524)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444455567777777765
No 138
>PRK10862 SoxR reducing system protein RseC; Provisional
Probab=27.04 E-value=97 Score=24.01 Aligned_cols=19 Identities=16% Similarity=0.197 Sum_probs=9.6
Q ss_pred hHHHHHhhhhHHHHHHhhh
Q 022511 230 LTTTIVGVLKGVGSTTLGF 248 (296)
Q Consensus 230 ~~~s~~~~l~pi~~~~~~~ 248 (296)
...+++.|+-|++..+.+.
T Consensus 75 lkaa~lvYllPLl~li~ga 93 (154)
T PRK10862 75 LRSALLVYMTPLVGLFLGA 93 (154)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555443
No 139
>PRK09579 multidrug efflux protein; Reviewed
Probab=25.99 E-value=7.7e+02 Score=25.73 Aligned_cols=19 Identities=26% Similarity=0.214 Sum_probs=10.5
Q ss_pred HHhhhHHHHHHHHHHHhCC
Q 022511 167 YNSFLSLPFLVFLIIVTGE 185 (296)
Q Consensus 167 ~~~~~~~~~l~~~~~~~~~ 185 (296)
.+.+.....++|+++..|.
T Consensus 950 mTtlTti~gllPla~~~g~ 968 (1017)
T PRK09579 950 MTTAAMVFGMVPLILATGA 968 (1017)
T ss_pred HHHHHHHHHHHHHHHhcCC
Confidence 3345556666776665443
No 140
>PF03739 YjgP_YjgQ: Predicted permease YjgP/YjgQ family; InterPro: IPR005495 Members of this family are predicted integral membrane proteins of unknown function. They are about 350 amino acids long, contain about 6 transmembrane regions and may be permeases, although there is no verification of this.; GO: 0016021 integral to membrane
Probab=25.59 E-value=4.6e+02 Score=22.97 Aligned_cols=61 Identities=13% Similarity=0.087 Sum_probs=30.4
Q ss_pred hhhhhhhhhhHhhhcCCcccchhHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHh
Q 022511 109 LSVLLTATGCVIAALGDFSFDLSGYSMALTSVFFQTMYLVLVEKSGAEDGLSSVEIMFYNS 169 (296)
Q Consensus 109 ~~i~l~~~Gv~l~~~~~~~~~~~G~~~~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~ 169 (296)
.+++++++|+.+.....-+....+...+++-.+.+=....+.+...++...+|........
T Consensus 281 ~~l~~~lla~~l~~~~~r~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~l~p~~a~w~p~ 341 (354)
T PF03739_consen 281 SCLILVLLALPLGIRFPRSGRISSLFIALLLGFLYYILFSFFSSLGENGNLPPFIAAWLPN 341 (354)
T ss_pred HHHHHHHHHHHHhhccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHH
Confidence 4555666666655443333333444444444444444444555555555566665554443
No 141
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=25.08 E-value=2.3e+02 Score=24.94 Aligned_cols=50 Identities=10% Similarity=0.058 Sum_probs=35.0
Q ss_pred hcccchhHHHHHHhhHHHHHHHHHHHhcCccCCccchhhhhhhhhhhHhh
Q 022511 72 LKGVNIPMYIAIKRLTPLAVLVAGFFSGKGKPTTQVTLSVLLTATGCVIA 121 (296)
Q Consensus 72 l~~~~~s~~~~l~~~~pv~~~l~~~~~~~e~~~~~~~~~i~l~~~Gv~l~ 121 (296)
+..++.-+.++.--..-+.+.+++..+.+++++...|.+...+..|+..-
T Consensus 264 l~~Ts~ltlSIaGI~Kel~tl~la~ii~~d~ls~lN~~Gl~i~~agi~~~ 313 (349)
T KOG1443|consen 264 LSRTSSLTLSIAGIVKEVCTLLLAIIILKDQLSLLNWLGLAICLAGILLH 313 (349)
T ss_pred eeeccceeeeHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHh
Confidence 34455444444444555677778888888888888888888888888775
No 142
>PF15102 TMEM154: TMEM154 protein family
Probab=24.63 E-value=35 Score=26.14 Aligned_cols=22 Identities=18% Similarity=0.048 Sum_probs=12.9
Q ss_pred HHHHHHHHHHhHHHHHHHHhhh
Q 022511 261 VTGLLINTAGGVWYSYAKYQQK 282 (296)
Q Consensus 261 ~~G~~lil~g~~~~~~~~~~~~ 282 (296)
+++.++++..++++.+.|+|+.
T Consensus 66 VLLvlLLl~vV~lv~~~kRkr~ 87 (146)
T PF15102_consen 66 VLLVLLLLSVVCLVIYYKRKRT 87 (146)
T ss_pred HHHHHHHHHHHHheeEEeeccc
Confidence 5566666666666665554443
No 143
>PF15471 TMEM171: Transmembrane protein family 171
Probab=24.57 E-value=40 Score=28.60 Aligned_cols=24 Identities=25% Similarity=0.430 Sum_probs=19.7
Q ss_pred hhhHHHHHHHHHHhHHHHHHHHhh
Q 022511 258 ALNVTGLLINTAGGVWYSYAKYQQ 281 (296)
Q Consensus 258 ~~~~~G~~lil~g~~~~~~~~~~~ 281 (296)
..|+.|-.+++.|.+.+.....|+
T Consensus 161 slQImGPlIVl~GLCFFVVAHvKK 184 (319)
T PF15471_consen 161 SLQIMGPLIVLVGLCFFVVAHVKK 184 (319)
T ss_pred ehhhhhhHHHHHhhhhhheeeeee
Confidence 679999999999999987764443
No 144
>PRK00052 prolipoprotein diacylglyceryl transferase; Reviewed
Probab=24.00 E-value=95 Score=26.53 Aligned_cols=22 Identities=9% Similarity=0.098 Sum_probs=18.7
Q ss_pred cchhhHHHHHHHHHHhHHHHHH
Q 022511 256 VRALNVTGLLINTAGGVWYSYA 277 (296)
Q Consensus 256 ~t~~~~~G~~lil~g~~~~~~~ 277 (296)
+|..|+++..+++.|+.+..+.
T Consensus 237 ls~~Q~isl~~~~~gi~~~~~~ 258 (269)
T PRK00052 237 LTMGQILSIPMILLGIILLIWA 258 (269)
T ss_pred cCHHHHHHHHHHHHHHHHHHHH
Confidence 6889999999999998876544
No 145
>PF04995 CcmD: Heme exporter protein D (CcmD); InterPro: IPR007078 The CcmD protein is part of a C-type cytochrome biogenesis operon []. The exact function of this protein is uncertain. It has been proposed that CcmC, CcmD and CcmE interact directly with each other, establishing a cytoplasm to periplasm haem delivery pathway for cytochrome c maturation []. This protein is found fused to CcmE in P52224 from SWISSPROT. These proteins contain a predicted transmembrane helix.; GO: 0006810 transport, 0016021 integral to membrane
Probab=23.55 E-value=90 Score=18.53 Aligned_cols=21 Identities=14% Similarity=0.088 Sum_probs=10.7
Q ss_pred hHHHHHHHHHHhHHHHHHHHh
Q 022511 260 NVTGLLINTAGGVWYSYAKYQ 280 (296)
Q Consensus 260 ~~~G~~lil~g~~~~~~~~~~ 280 (296)
.+.-.++++++.+.....+.+
T Consensus 10 sYg~t~~~l~~l~~~~~~~~r 30 (46)
T PF04995_consen 10 SYGVTALVLAGLIVWSLRRRR 30 (46)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555554443
No 146
>PRK10189 MATE family multidrug exporter; Provisional
Probab=23.05 E-value=6.2e+02 Score=23.55 Aligned_cols=27 Identities=4% Similarity=-0.018 Sum_probs=18.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhccC
Q 022511 130 LSGYSMALTSVFFQTMYLVLVEKSGAE 156 (296)
Q Consensus 130 ~~G~~~~l~s~~~~a~~~v~~k~~~~~ 156 (296)
..++.....-+++.|......+....+
T Consensus 303 i~~~~~~~~~gi~~A~~~lvg~~~Ga~ 329 (478)
T PRK10189 303 IAALINLPGNALGSASTIITGTRLGKG 329 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 455666666678888888888776543
No 147
>TIGR02840 spore_YtaF putative sporulation protein YtaF. This protein family was identified, at the time of the publication of the Carboxydothermus hydrogenoformans genome, as having a phylogenetic profile that exactly matches the subset of the Firmicutes capable of forming endospores. The species include Bacillus anthracis, Clostridium tetani, Thermoanaerobacter tengcongensis, Geobacillus kaustophilus, etc. This protein, previously named YtaF, is therefore a putative sporulation protein.
Probab=22.31 E-value=1.5e+02 Score=24.16 Aligned_cols=46 Identities=17% Similarity=0.094 Sum_probs=26.6
Q ss_pred cChhHHHHHhhhhHHHHHHhhheeeCCccc-c-hhhHHH-HHHHHHHhHHH
Q 022511 227 NSALTTTIVGVLKGVGSTTLGFVVLGGVQV-R-ALNVTG-LLINTAGGVWY 274 (296)
Q Consensus 227 ~sa~~~s~~~~l~pi~~~~~~~~~~~e~~~-t-~~~~~G-~~lil~g~~~~ 274 (296)
..+...+.+..+-|..+..+|-.+- + .+ . ..+++| .+++..|..+.
T Consensus 31 ~~~l~ig~~~~~~~~lg~~~G~~~~-~-~i~~~~~~~ig~~iLi~iG~~mi 79 (206)
T TIGR02840 31 LSNLIIAVISGLFIFISMLLGKFLA-K-FLPPKVTEILGAFILIAIGIWII 79 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-H-HhchhhHHHHHHHHHHHHHHHHH
Confidence 3456666666777777777776654 2 33 2 245555 44555565544
No 148
>PRK15120 lipopolysaccharide ABC transporter permease LptF; Provisional
Probab=21.76 E-value=5.7e+02 Score=22.71 Aligned_cols=64 Identities=6% Similarity=0.035 Sum_probs=34.4
Q ss_pred hhhhhhhhhhhHhhhcCCcccchhHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHhhh
Q 022511 108 TLSVLLTATGCVIAALGDFSFDLSGYSMALTSVFFQTMYLVLVEKSGAEDGLSSVEIMFYNSFL 171 (296)
Q Consensus 108 ~~~i~l~~~Gv~l~~~~~~~~~~~G~~~~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~ 171 (296)
+.+++++++|+-+.....-+....|+..+++-.+.|=.-....+....+...+|+......++.
T Consensus 274 l~~l~l~llavpl~~~~~R~g~~~~i~~~i~~~~~y~~l~~~~~~l~~~g~lpp~la~Wlp~i~ 337 (366)
T PRK15120 274 FSVFIMALMVVPLSVVNPRQGRVLSMLPAMLLYLIFFLLQTSLRSNGGKGKLDPMIWMWAVNLI 337 (366)
T ss_pred HHHHHHHHHHhhhcccCCccccchhHHHHHHHHHHHHHHHHHHHHHHHCCCCChHHHHHHHHHH
Confidence 4566666667666443332333345555555544444444455556555567776655555433
No 149
>COG1742 Uncharacterized conserved protein [Function unknown]
Probab=21.36 E-value=3.2e+02 Score=19.71 Aligned_cols=44 Identities=23% Similarity=0.132 Sum_probs=34.9
Q ss_pred HHHHhhhhHHHHHHhhheeeCCcccchhhHHHHHHHHHHhHHHHH
Q 022511 232 TTIVGVLKGVGSTTLGFVVLGGVQVRALNVTGLLINTAGGVWYSY 276 (296)
Q Consensus 232 ~s~~~~l~pi~~~~~~~~~~~e~~~t~~~~~G~~lil~g~~~~~~ 276 (296)
++-.+-+-.+.+.++.+++=| ..++...++|..++++|+.....
T Consensus 61 YAAYGGvyI~~sL~W~~~Vdg-~~pdr~D~~Ga~icl~G~~vil~ 104 (109)
T COG1742 61 YAAYGGVYIAASLAWLWVVDG-VRPDRYDWIGAAICLAGVAVILF 104 (109)
T ss_pred HHHhcchHHHHHHHHHHHHcC-cCCcHHHhhhHHHHHhceeeeEe
Confidence 444566677888889998876 59999999999999999765543
No 150
>PF07168 Ureide_permease: Ureide permease; InterPro: IPR009834 This entry represents ureide permease, which transports a wide spectrum of oxo derivatives of heterocyclic nitrogen compounds, including allantoin, uric acid and xanthine, but not adenine. Transport is dependent on glucose and a proton gradient [].
Probab=21.31 E-value=77 Score=27.65 Aligned_cols=133 Identities=14% Similarity=0.119 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHhhhHHHHHHHHH-HHhCC-------chhhhhhhhcccCchhHHHHHHH
Q 022511 137 LTSVFFQTMYLVLVEKSGAEDGLSSVEIMFYNSFLSLPFLVFLI-IVTGE-------FPGSLSLLFSKSNSFSFLVILIL 208 (296)
Q Consensus 137 l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~ 208 (296)
+++.+|++-.-..+|..-++.+... ..++-..++.++...+. +-.|. .+....+. .+ .++..+...+.
T Consensus 2 ~itmlcwGSW~nt~kL~~r~gR~~q--h~Y~DYsig~lL~All~A~TlGs~G~~~~~g~~Fl~qL-~Q-~n~~sv~~A~a 77 (336)
T PF07168_consen 2 VITMLCWGSWPNTQKLAERRGRLPQ--HFYWDYSIGNLLAALLIAFTLGSIGESTPEGPNFLTQL-SQ-ANWPSVLFAMA 77 (336)
T ss_pred eeehhhhcChHHHHHHHHhcCCccc--eehhHHHHHHHHHHHHHHHhccccCCCCCCCccHHHHH-hc-CChHHHHHHHH
Confidence 4567788777777766554432221 23322223333222222 22222 12222211 11 23333445556
Q ss_pred HHHHHHHHHHHHHHHHhccChhHHHHHh-hhhHHHHHHhhheeeCCcccc--hhhHHHHHHHHHHhHHHH
Q 022511 209 SLVMGIILNFTMFLCTIVNSALTTTIVG-VLKGVGSTTLGFVVLGGVQVR--ALNVTGLLINTAGGVWYS 275 (296)
Q Consensus 209 ~g~~~~~~~~~~~~~~~~~sa~~~s~~~-~l~pi~~~~~~~~~~~e~~~t--~~~~~G~~lil~g~~~~~ 275 (296)
.|+.--+.+.+..+++...+-+.+-+++ -+.-+..+.+.++ . |.+.+ ..-..|.+++++++++-.
T Consensus 78 GGvvfnlgNillq~aia~aGmSVafpvg~glalVlGv~~NYf-l-d~~~n~a~iLF~GV~cf~iAI~lga 145 (336)
T PF07168_consen 78 GGVVFNLGNILLQAAIAFAGMSVAFPVGIGLALVLGVTLNYF-L-DPKINRAEILFPGVACFLIAIILGA 145 (336)
T ss_pred hhHhhhhHHHHHHHHHHHhcceeeeeeecceEEEEeeeeeee-c-cCCCCCceEEEccHHHHHHHHHHHH
Confidence 6666666665555554444332211111 1122233334432 2 33554 355668888888877643
No 151
>TIGR00544 lgt prolipoprotein diacylglyceryl transferase. The conversion of lipoprotein precursors into lipoproteins consists of three steps. First, the enzyme described by this model transfers a diacylglyceryl moiety from phosphatidylglycerol to the side chain of a Cys that will become the new N-terminus. Second, the signal peptide is removed by signal peptidase II. Finally, the free amino group of the new N-terminal Cys is acylated by apolipoprotein N-acyltransferase.
Probab=21.26 E-value=1.1e+02 Score=26.43 Aligned_cols=22 Identities=14% Similarity=0.033 Sum_probs=18.3
Q ss_pred cchhhHHHHHHHHHHhHHHHHH
Q 022511 256 VRALNVTGLLINTAGGVWYSYA 277 (296)
Q Consensus 256 ~t~~~~~G~~lil~g~~~~~~~ 277 (296)
+|..|++...++++|+++..+.
T Consensus 246 lt~~Q~~sl~~i~~g~~~~~~~ 267 (278)
T TIGR00544 246 ISMGQILSLLMIAGILIIMLLA 267 (278)
T ss_pred CcHHHHHHHHHHHHHHHHHHHH
Confidence 6899999999999998876543
No 152
>PF03729 DUF308: Short repeat of unknown function (DUF308); InterPro: IPR005325 This represents a group of short repeats that occurs in a limited number of membrane proteins. It may divide further in short repeats of around 7-10 residues of the pattern G-#-X(2)-#(2)-X (#=hydrophobic).
Probab=20.97 E-value=2.3e+02 Score=17.85 Aligned_cols=27 Identities=15% Similarity=0.143 Sum_probs=18.8
Q ss_pred hhhhhhhhhhHhhhcCCcccchhHHHH
Q 022511 109 LSVLLTATGCVIAALGDFSFDLSGYSM 135 (296)
Q Consensus 109 ~~i~l~~~Gv~l~~~~~~~~~~~G~~~ 135 (296)
.+++...+|+++...++...+......
T Consensus 2 ~Gil~iv~Gi~~l~~p~~~~~~~~~i~ 28 (72)
T PF03729_consen 2 SGILFIVLGILLLFNPDASLAALAIIL 28 (72)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 467788889988888877665444333
No 153
>PRK06638 NADH:ubiquinone oxidoreductase subunit J; Provisional
Probab=20.94 E-value=4.5e+02 Score=21.23 Aligned_cols=47 Identities=17% Similarity=0.256 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHhhhHHHHHHHHHHHh
Q 022511 133 YSMALTSVFFQTMYLVLVEKSGAEDGLSSVEIMFYNSFLSLPFLVFLIIVT 183 (296)
Q Consensus 133 ~~~~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 183 (296)
.++.+.+-++.|...+...- +. ....++..|......+++....+..
T Consensus 32 ~l~Li~~f~~vA~l~~ll~a---~F-la~~qIiVYvGAI~VLflFvIMll~ 78 (198)
T PRK06638 32 ALFLILTFLSIAGLYFLLGA---EF-LGVVQIIVYVGAVMVLFLFVVMMLD 78 (198)
T ss_pred HHHHHHHHHHHHHHHHHhch---HH-HHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 34444444444544444321 11 3567777888777777666666653
No 154
>PF01350 Flavi_NS4A: Flavivirus non-structural protein NS4A; InterPro: IPR000404 Flaviviruses encode a single polyprotein. This is cleaved into three structural and seven non-structural proteins. The NS4A protein is small and poorly conserved among the Flaviviruses. NS4A contains multiple hydrophobic potential membrane spanning regions []. NS4A has only been found in cells infected by Kunjin virus [].; GO: 0016032 viral reproduction, 0016070 RNA metabolic process, 0044423 virion part
Probab=20.51 E-value=4e+02 Score=20.44 Aligned_cols=50 Identities=12% Similarity=0.072 Sum_probs=27.1
Q ss_pred HHHHhccChhHHHHHhhhhHHHHHHhhheeeCCcccchhhHHHHHHHHHHhHHHH
Q 022511 221 FLCTIVNSALTTTIVGVLKGVGSTTLGFVVLGGVQVRALNVTGLLINTAGGVWYS 275 (296)
Q Consensus 221 ~~~~~~~sa~~~s~~~~l~pi~~~~~~~~~~~e~~~t~~~~~G~~lil~g~~~~~ 275 (296)
+...++-+..+.++- .+ .-..-+++.+-. ..++.++.|..++..=....-
T Consensus 66 ~~lm~~kgi~rm~lG-~~---vm~~~~~llw~g-gv~~~~IAg~~lv~filmvVL 115 (144)
T PF01350_consen 66 WFLMRRKGIGRMSLG-ML---VMAVAGYLLWMG-GVPPGQIAGVLLVFFILMVVL 115 (144)
T ss_pred HhhhcCCCcchhhHH-HH---HHHHHHHHHHhc-CCcHHHhHHHHHHHHHHHHhc
Confidence 344566666666542 22 222223333322 589999999988665544433
No 155
>TIGR03144 cytochr_II_ccsB cytochrome c-type biogenesis protein CcsB. Members of this protein family represent one of two essential proteins of system II for c-type cytochrome biogenesis. Additional proteins tend to be part of the system but can be replaced by chemical reductants such as dithiothreitol. This protein is designated CcsB in Bordetella pertussis and some other bacteria, resC in Bacillus (where there is additional N-terminal sequence), and CcsA in chloroplast. We use the CcsB designation here. Member sequences show regions of strong sequence conservation and variable-length, poorly conserved regions in between; sparsely filled columns were removed from the seed alignment prior to model construction.
Probab=20.41 E-value=5.1e+02 Score=21.61 Aligned_cols=24 Identities=21% Similarity=0.414 Sum_probs=15.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHh
Q 022511 130 LSGYSMALTSVFFQTMYLVLVEKS 153 (296)
Q Consensus 130 ~~G~~~~l~s~~~~a~~~v~~k~~ 153 (296)
..|+....++.+....|.+..|+.
T Consensus 101 ~l~ya~~~la~~~a~lyL~~~~~l 124 (243)
T TIGR03144 101 ILSYAALLVGSLLSIAYLLKTRKQ 124 (243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456666666776666666665554
No 156
>PRK15127 multidrug efflux system protein AcrB; Provisional
Probab=20.33 E-value=1e+03 Score=25.01 Aligned_cols=21 Identities=33% Similarity=0.341 Sum_probs=13.3
Q ss_pred cCCccchhhhhhhhhhhHhhh
Q 022511 102 KPTTQVTLSVLLTATGCVIAA 122 (296)
Q Consensus 102 ~~~~~~~~~i~l~~~Gv~l~~ 122 (296)
|.+..-..++.++++|.++..
T Consensus 896 ~~pliI~~~IPls~~Ga~~~l 916 (1049)
T PRK15127 896 SIPFSVMLVVPLGVIGALLAA 916 (1049)
T ss_pred hhhHHHHHHHHHHHHHHHHHH
Confidence 555666666777777766643
No 157
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=20.18 E-value=70 Score=27.54 Aligned_cols=44 Identities=16% Similarity=0.045 Sum_probs=36.4
Q ss_pred HHHHHHhhHHHHHHHHHHHhcCccCCccchhhhhhhhhhhHhhh
Q 022511 79 MYIAIKRLTPLAVLVAGFFSGKGKPTTQVTLSVLLTATGCVIAA 122 (296)
Q Consensus 79 ~~~~l~~~~pv~~~l~~~~~~~e~~~~~~~~~i~l~~~Gv~l~~ 122 (296)
+.++...+.=.+..+++.+.++.+.+++.|++..+.+.|..+.+
T Consensus 270 TVTlvltlRKFvSLl~SiiyF~Npft~~h~lGa~lVF~Gt~~fa 313 (330)
T KOG1583|consen 270 TVTLVLTLRKFVSLLFSIIYFENPFTPWHWLGAALVFFGTLLFA 313 (330)
T ss_pred EEEEeeeHHHHHHHhheeeEecCCCCHHHHHHHHHHHHHHHHHH
Confidence 34455566677888899999999999999999999999998864
No 158
>PRK11469 hypothetical protein; Provisional
Probab=20.03 E-value=1.7e+02 Score=23.46 Aligned_cols=44 Identities=14% Similarity=0.086 Sum_probs=25.5
Q ss_pred hhHHHHHhhhhHHHHHHhhheeeCCcccchhhHHHHHH-HHHHhHH
Q 022511 229 ALTTTIVGVLKGVGSTTLGFVVLGGVQVRALNVTGLLI-NTAGGVW 273 (296)
Q Consensus 229 a~~~s~~~~l~pi~~~~~~~~~~~e~~~t~~~~~G~~l-il~g~~~ 273 (296)
+...+..+.+.|..+...|-.+-+ -.....+|+|..+ +..|..+
T Consensus 40 ~l~~g~~q~~m~~~g~~~G~~l~~-~i~~~~~~i~~~lL~~lG~~m 84 (188)
T PRK11469 40 GLIFGAVETLTPLIGWGMGMLASR-FVLEWNHWIAFVLLIFLGGRM 84 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 445566667777777777765543 2344556777665 3334443
Done!