Query 022511
Match_columns 296
No_of_seqs 145 out of 1378
Neff 9.7
Searched_HMMs 29240
Date Mon Mar 25 06:41:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022511.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022511hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3b5d_A Multidrug transporter E 98.6 3.9E-07 1.3E-11 65.8 9.3 72 54-125 33-105 (110)
2 2i68_A Protein EMRE; transmemb 98.6 7.5E-08 2.6E-12 72.2 5.3 61 217-278 44-105 (137)
3 2i68_A Protein EMRE; transmemb 98.5 3.7E-07 1.3E-11 68.3 7.5 71 54-124 33-104 (137)
4 3b5d_A Multidrug transporter E 98.1 1E-05 3.4E-10 58.4 7.6 59 218-277 45-104 (110)
5 3l1l_A Arginine/agmatine antip 58.8 14 0.00047 32.4 5.5 30 259-288 409-438 (445)
6 2jo1_A Phospholemman; FXYD1, N 48.5 18 0.00062 22.8 3.1 20 260-279 21-40 (72)
7 2jp3_A FXYD domain-containing 33.0 40 0.0014 21.1 2.9 21 260-280 22-42 (67)
8 2zxe_G FXYD10, phospholemman-l 25.6 34 0.0011 21.8 1.6 19 260-278 24-42 (74)
9 1pw4_A Glycerol-3-phosphate tr 17.8 4.4E+02 0.015 22.1 11.6 151 134-295 292-451 (451)
10 2rdd_B UPF0092 membrane protei 16.4 69 0.0024 17.2 1.5 37 257-293 1-37 (37)
No 1
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.57 E-value=3.9e-07 Score=65.83 Aligned_cols=72 Identities=13% Similarity=0.098 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHHHHHhhhhcccchhHHHHH-HhhHHHHHHHHHHHhcCccCCccchhhhhhhhhhhHhhhcCC
Q 022511 54 LLPVSLFYNANVAFALASLKGVNIPMYIAI-KRLTPLAVLVAGFFSGKGKPTTQVTLSVLLTATGCVIAALGD 125 (296)
Q Consensus 54 ~l~~~~~~~~~~~~~~~al~~~~~s~~~~l-~~~~pv~~~l~~~~~~~e~~~~~~~~~i~l~~~Gv~l~~~~~ 125 (296)
.+...+.+..+.++...++++.|.+.+..+ ..+.|+++++.+++++||+++..++.++.+.++|++++...+
T Consensus 33 ~~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~~ 105 (110)
T 3b5d_A 33 SVGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 344455678888999999999999999888 899999999999999999999999999999999999876543
No 2
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.55 E-value=7.5e-08 Score=72.17 Aligned_cols=61 Identities=10% Similarity=0.056 Sum_probs=43.8
Q ss_pred HHHHHHHHhccChhHHHHH-hhhhHHHHHHhhheeeCCcccchhhHHHHHHHHHHhHHHHHHH
Q 022511 217 NFTMFLCTIVNSALTTTIV-GVLKGVGSTTLGFVVLGGVQVRALNVTGLLINTAGGVWYSYAK 278 (296)
Q Consensus 217 ~~~~~~~~~~~sa~~~s~~-~~l~pi~~~~~~~~~~~e~~~t~~~~~G~~lil~g~~~~~~~~ 278 (296)
.+++..++++.++..+..+ ..+.|+++.++|+++||| ++|+.+++|++++++|+++.+..+
T Consensus 44 ~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE-~ls~~~~~Gi~LIi~GV~ll~~~~ 105 (137)
T 2i68_A 44 FWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQ-RLDLPAIIGMMLICAGVLIINLLS 105 (137)
T ss_dssp HHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHHHHHHHhcCC
Confidence 3566788999999988777 899999999999999995 999999999999999999987644
No 3
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.48 E-value=3.7e-07 Score=68.35 Aligned_cols=71 Identities=13% Similarity=0.097 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHHHHhhhhcccchhHHHHH-HhhHHHHHHHHHHHhcCccCCccchhhhhhhhhhhHhhhcC
Q 022511 54 LLPVSLFYNANVAFALASLKGVNIPMYIAI-KRLTPLAVLVAGFFSGKGKPTTQVTLSVLLTATGCVIAALG 124 (296)
Q Consensus 54 ~l~~~~~~~~~~~~~~~al~~~~~s~~~~l-~~~~pv~~~l~~~~~~~e~~~~~~~~~i~l~~~Gv~l~~~~ 124 (296)
.+...+.++...++.+.++++.|++.+..+ .++.|+++++++++++||++++.++.++.+.++|++++...
T Consensus 33 ~~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~ 104 (137)
T 2i68_A 33 SVGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL 104 (137)
T ss_dssp -CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 345556688999999999999999988888 89999999999999999999999999999999999987653
No 4
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.11 E-value=1e-05 Score=58.37 Aligned_cols=59 Identities=10% Similarity=0.075 Sum_probs=52.3
Q ss_pred HHHHHHHhccChhHHHHH-hhhhHHHHHHhhheeeCCcccchhhHHHHHHHHHHhHHHHHH
Q 022511 218 FTMFLCTIVNSALTTTIV-GVLKGVGSTTLGFVVLGGVQVRALNVTGLLINTAGGVWYSYA 277 (296)
Q Consensus 218 ~~~~~~~~~~sa~~~s~~-~~l~pi~~~~~~~~~~~e~~~t~~~~~G~~lil~g~~~~~~~ 277 (296)
++...++|+.+...+..+ ..+.|+.+.+.|++++|| ++|+.+++|+.+++.|++..+..
T Consensus 45 ~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E-~~s~~~~~Gi~lIi~Gv~~l~~~ 104 (110)
T 3b5d_A 45 WLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQ-RLDLPAIIGMMLICAGVLIINLL 104 (110)
T ss_pred HHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHHHHHHHhcC
Confidence 555678899999888777 899999999999999995 99999999999999999988653
No 5
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=58.78 E-value=14 Score=32.38 Aligned_cols=30 Identities=10% Similarity=0.016 Sum_probs=19.6
Q ss_pred hhHHHHHHHHHHhHHHHHHHHhhhhccCCc
Q 022511 259 LNVTGLLINTAGGVWYSYAKYQQKKKKLPK 288 (296)
Q Consensus 259 ~~~~G~~lil~g~~~~~~~~~~~~~~~~~~ 288 (296)
..+.|..+++.|...|...+++++++++.+
T Consensus 409 ~~~~~~~~~~~g~~~y~~~~~~~~~~~~~~ 438 (445)
T 3l1l_A 409 EVMWSFVTLMVITAMYALNYNRLHKNPYPL 438 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTCCCSSCC
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcccCcccc
Confidence 355688888889888887665544433333
No 6
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=48.50 E-value=18 Score=22.80 Aligned_cols=20 Identities=10% Similarity=-0.077 Sum_probs=11.0
Q ss_pred hHHHHHHHHHHhHHHHHHHH
Q 022511 260 NVTGLLINTAGGVWYSYAKY 279 (296)
Q Consensus 260 ~~~G~~lil~g~~~~~~~~~ 279 (296)
.+.+.++.++|+++....|-
T Consensus 21 LifA~vLfi~GI~iilS~Kc 40 (72)
T 2jo1_A 21 LVIAGILFILGILIVLSRRC 40 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCcc
Confidence 34555566666665544443
No 7
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=32.98 E-value=40 Score=21.06 Aligned_cols=21 Identities=24% Similarity=0.112 Sum_probs=11.4
Q ss_pred hHHHHHHHHHHhHHHHHHHHh
Q 022511 260 NVTGLLINTAGGVWYSYAKYQ 280 (296)
Q Consensus 260 ~~~G~~lil~g~~~~~~~~~~ 280 (296)
.+.+.++.++|+++....|-+
T Consensus 22 LifA~vLfi~GI~iilS~kcr 42 (67)
T 2jp3_A 22 LIFGGLLCIAGIALALSGKCK 42 (67)
T ss_dssp HHHHHHHHHHHHHHHHTTHHH
T ss_pred hhhHHHHHHHHHHHHHcCccc
Confidence 345556666666665444433
No 8
>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G*
Probab=25.56 E-value=34 Score=21.82 Aligned_cols=19 Identities=11% Similarity=0.076 Sum_probs=10.3
Q ss_pred hHHHHHHHHHHhHHHHHHH
Q 022511 260 NVTGLLINTAGGVWYSYAK 278 (296)
Q Consensus 260 ~~~G~~lil~g~~~~~~~~ 278 (296)
.+.+.++.++|+.+....|
T Consensus 24 LifA~vLfi~GI~iilS~k 42 (74)
T 2zxe_G 24 LIVAAVLCVIGIIILLAGK 42 (74)
T ss_dssp HHHHHHHHHHHHHHHTTTC
T ss_pred chhHHHHHHHHHHHHHcCc
Confidence 3445556666666554443
No 9
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=17.83 E-value=4.4e+02 Score=22.08 Aligned_cols=151 Identities=6% Similarity=-0.157 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHhhhHHHHHHHHHHHhCCchhhhhhhhcccCchhHHHHHHHHHHHH
Q 022511 134 SMALTSVFFQTMYLVLVEKSGAEDGLSSVEIMFYNSFLSLPFLVFLIIVTGEFPGSLSLLFSKSNSFSFLVILILSLVMG 213 (296)
Q Consensus 134 ~~~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 213 (296)
.......++..+......++.++...+........................+.. ...........|...
T Consensus 292 ~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~g~~~ 360 (451)
T 1pw4_A 292 WAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGN-----------PTVDMICMIVIGFLI 360 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTC-----------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcccC-----------HHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHhccChhH--------HHHHhhh-hHHHHHHhhheeeCCcccchhhHHHHHHHHHHhHHHHHHHHhhhhc
Q 022511 214 IILNFTMFLCTIVNSALT--------TTIVGVL-KGVGSTTLGFVVLGGVQVRALNVTGLLINTAGGVWYSYAKYQQKKK 284 (296)
Q Consensus 214 ~~~~~~~~~~~~~~sa~~--------~s~~~~l-~pi~~~~~~~~~~~e~~~t~~~~~G~~lil~g~~~~~~~~~~~~~~ 284 (296)
............+..+.. .+....+ ...++..+.-.+.+........++..++.+++.++....+++++++
T Consensus 361 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (451)
T 1pw4_A 361 YGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEKRR 440 (451)
T ss_dssp THHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q ss_pred cCCcchHhhhc
Q 022511 285 KLPKSDVEAYR 295 (296)
Q Consensus 285 ~~~~~~~~~~~ 295 (296)
+++..++..+|
T Consensus 441 ~~~~~~~~~~~ 451 (451)
T 1pw4_A 441 HEQLLQELVPR 451 (451)
T ss_dssp HHGGGGGSCC-
T ss_pred hhHHHHHhcCC
No 10
>2rdd_B UPF0092 membrane protein YAJC; drug resistance, multidrug efflux, transporter, antiporter, novel transmembrane helix, ACRB, inner membrane; HET: AIC; 3.50A {Escherichia coli}
Probab=16.40 E-value=69 Score=17.24 Aligned_cols=37 Identities=16% Similarity=0.170 Sum_probs=0.0
Q ss_pred chhhHHHHHHHHHHhHHHHHHHHhhhhccCCcchHhh
Q 022511 257 RALNVTGLLINTAGGVWYSYAKYQQKKKKLPKSDVEA 293 (296)
Q Consensus 257 t~~~~~G~~lil~g~~~~~~~~~~~~~~~~~~~~~~~ 293 (296)
+....+-..+++.++..+-..|.++++.+++++-.++
T Consensus 1 ~~~~~~l~~v~~~~ifYFl~iRPQ~Kr~K~~~~m~~~ 37 (37)
T 2rdd_B 1 SPMSLILMLVVFGLIFYFMILRPQQKRTKEHKKLMDS 37 (37)
T ss_dssp CCCHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTGGGC
T ss_pred CcHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhC
Done!