BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 022512
         (296 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3FMW|A Chain A, The Crystal Structure Of Mtmoiv, A Baeyer-Villiger
           Monooxygenase From The Mithramycin Biosynthetic Pathway
           In Streptomyces Argillaceus.
 pdb|3FMW|B Chain B, The Crystal Structure Of Mtmoiv, A Baeyer-Villiger
           Monooxygenase From The Mithramycin Biosynthetic Pathway
           In Streptomyces Argillaceus.
 pdb|3FMW|C Chain C, The Crystal Structure Of Mtmoiv, A Baeyer-Villiger
           Monooxygenase From The Mithramycin Biosynthetic Pathway
           In Streptomyces Argillaceus
          Length = 570

 Score = 35.4 bits (80), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 29/126 (23%), Positives = 48/126 (38%), Gaps = 16/126 (12%)

Query: 75  ISSFESKLRQAVKYSLEEIKLAGSKCSCRTPVAG-GCRTCMRKEISVRLQNVGYNCVICK 133
           +S F    RQA +Y    + LAG       P+ G G  T ++  +     N+G+      
Sbjct: 306 LSRFGDASRQAKRYRSGRVLLAGDAAHVHFPIGGQGLNTGLQDAV-----NLGWKLAARV 360

Query: 134 SKWKSSSEIPAGNHTYLEVVEKSKKGDVIRVVIELNFRAEFEMARASEEYNRLVNRLPEV 193
             W        G+   L+     +     RV+  LN RA+  + R  E++   +    E 
Sbjct: 361 RGW--------GSEELLDTYHDERHPVAERVL--LNTRAQLALMRPDEQHTTPLRGFVEE 410

Query: 194 FVGKTE 199
            +G  E
Sbjct: 411 LLGTDE 416


>pdb|1X6F|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain Of
           Human Zinc Finger Protein 462
          Length = 88

 Score = 28.5 bits (62), Expect = 5.1,   Method: Composition-based stats.
 Identities = 14/38 (36%), Positives = 22/38 (57%)

Query: 121 RLQNVGYNCVICKSKWKSSSEIPAGNHTYLEVVEKSKK 158
           RLQN  Y C  C SK +S++E+ +  + + E  +K  K
Sbjct: 20  RLQNSTYQCKHCDSKLQSTAELTSHLNIHNEEFQKRAK 57


>pdb|1XZJ|A Chain A, Fusarium Solani Cutinase Mutant With Thr 38 Replaced By
           Phe
          Length = 214

 Score = 28.1 bits (61), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 30/117 (25%), Positives = 46/117 (39%), Gaps = 12/117 (10%)

Query: 5   PVSQPYSEEIARFLEGT----------ANFSDIVFGFMEESSES-TVGNLXXXXXXXXXX 53
           P S P  E  AR LE T          A+ +D++F F   S+E+  +G L          
Sbjct: 2   PTSNPAQELEARQLERTTRDDLINGNSASCADVIFIFARGSTETGNLGTLGPSIASNLES 61

Query: 54  XXXXXAFW-EAQEKLLQATIGRISSFESKLRQAVKYSLEEIKLAGSKCSCRTPVAGG 109
                  W +      +AT+G  +        A++  L   + A +KC   T +AGG
Sbjct: 62  AFGKDGVWIQGVGGAYRATLGDNALPRGTSSAAIREMLGLFQQANTKCPDATLIAGG 118


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.318    0.131    0.388 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,099,876
Number of Sequences: 62578
Number of extensions: 230594
Number of successful extensions: 562
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 554
Number of HSP's gapped (non-prelim): 11
length of query: 296
length of database: 14,973,337
effective HSP length: 98
effective length of query: 198
effective length of database: 8,840,693
effective search space: 1750457214
effective search space used: 1750457214
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)